Citrus Sinensis ID: 024096
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 272 | 2.2.26 [Sep-21-2011] | |||||||
| P31049 | 394 | Probable fatty acid methy | no | no | 0.904 | 0.624 | 0.359 | 5e-38 | |
| P0A9H7 | 382 | Cyclopropane-fatty-acyl-p | N/A | no | 0.875 | 0.623 | 0.369 | 7e-37 | |
| P0A9H8 | 382 | Cyclopropane-fatty-acyl-p | yes | no | 0.875 | 0.623 | 0.369 | 7e-37 | |
| P0C5C2 | 287 | Cyclopropane mycolic acid | no | no | 0.860 | 0.815 | 0.291 | 6e-25 | |
| A5U866 | 287 | Cyclopropane mycolic acid | no | no | 0.860 | 0.815 | 0.291 | 6e-25 | |
| Q49807 | 308 | Cyclopropane mycolic acid | no | no | 0.867 | 0.766 | 0.314 | 1e-24 | |
| Q79FX6 | 287 | Cyclopropane mycolic acid | no | no | 0.908 | 0.860 | 0.292 | 8e-24 | |
| A5U029 | 287 | Cyclopropane mycolic acid | no | no | 0.908 | 0.860 | 0.292 | 8e-24 | |
| Q7U1J9 | 287 | Cyclopropane mycolic acid | no | no | 0.908 | 0.860 | 0.292 | 2e-23 | |
| P0A5P0 | 302 | Cyclopropane mycolic acid | no | no | 0.871 | 0.784 | 0.287 | 1e-20 |
| >sp|P31049|FAMT_PSEPU Probable fatty acid methyltransferase OS=Pseudomonas putida PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 134/259 (51%), Gaps = 13/259 (5%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
M YSCA F+ L+ Q K L K R++ G +LD+GCGWG LA ++ K
Sbjct: 126 MAYSCAYFREPDNTLDQAQQDKFDHLCRKLRLNAGDYLLDVGCGWGGLARFAAREYDAKV 185
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHD--- 117
GITLS+EQLK +V+ GL D + + DYR LP+ ++D+++S GM EHVGH
Sbjct: 186 FGITLSKEQLKLGRQRVKAEGLTDKVDLQILDYRDLPQDGRFDKVVSVGMFEHVGHANLA 245
Query: 118 -YMEEFFGCCES--LLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRV 174
Y ++ FG L+ HG+ P R + FI Y+FP G LP L +
Sbjct: 246 LYCQKLFGAVREGGLVMNHGITAKHVDGRP-----VGRGAGEFIDRYVFPHGELPHLSMI 300
Query: 175 TSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYC 234
SA +GL V +E++ +HY +TL W +N + + AL EK +R W Y C
Sbjct: 301 -SASICEAGLEVVDVESLRLHYAKTLHHWSENLENQLHKAAAL-VPEKTLRIWRLYLAGC 358
Query: 235 AASFKSRIIGDYQIVFSRP 253
A +F+ I +QI+ +P
Sbjct: 359 AYAFEKGWINLHQILAVKP 377
|
Pseudomonas putida (taxid: 303) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|P0A9H7|CFA_ECOLI Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli (strain K12) GN=cfa PE=1 SV=2 | Back alignment and function description |
|---|
Score = 154 bits (389), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 138/252 (54%), Gaps = 14/252 (5%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
M YSCA +K + ++LE Q K+ ++ EK ++ G VLDIGCGWG LA +
Sbjct: 135 MQYSCAYWK-DADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSV 193
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
G+T+S EQ K A+ R GL + L DYR L +++DRI+S GM EHVG +
Sbjct: 194 VGVTISAEQQKMAQ--ERCEGLD--VTILLQDYRDL--NDQFDRIVSVGMFEHVGPKNYD 247
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
+F + L G+ +L I + + + P +I +YIFP GCLPS+ ++ A +S
Sbjct: 248 TYFAVVDRNLKPEGIFLLHTIGSKKT---DLNVDP-WINKYIFPNGCLPSVRQI--AQSS 301
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
+E N G Y TL W + F+ EI A ++E+F R + YY + CA +F++
Sbjct: 302 EPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEI-ADNYSERFKRMFTYYLNACAGAFRA 360
Query: 241 RIIGDYQIVFSR 252
R I +Q+VFSR
Sbjct: 361 RDIQLWQVVFSR 372
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Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P0A9H8|CFA_ECOL6 Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cfa PE=3 SV=2 | Back alignment and function description |
|---|
Score = 154 bits (389), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 138/252 (54%), Gaps = 14/252 (5%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
M YSCA +K + ++LE Q K+ ++ EK ++ G VLDIGCGWG LA +
Sbjct: 135 MQYSCAYWK-DADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSV 193
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
G+T+S EQ K A+ R GL + L DYR L +++DRI+S GM EHVG +
Sbjct: 194 VGVTISAEQQKMAQ--ERCEGLD--VTILLQDYRDL--NDQFDRIVSVGMFEHVGPKNYD 247
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
+F + L G+ +L I + + + P +I +YIFP GCLPS+ ++ A +S
Sbjct: 248 TYFAVVDRNLKPEGIFLLHTIGSKKT---DLNVDP-WINKYIFPNGCLPSVRQI--AQSS 301
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
+E N G Y TL W + F+ EI A ++E+F R + YY + CA +F++
Sbjct: 302 EPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEI-ADNYSERFKRMFTYYLNACAGAFRA 360
Query: 241 RIIGDYQIVFSR 252
R I +Q+VFSR
Sbjct: 361 RDIQLWQVVFSR 372
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Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge. Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P0C5C2|CMAS1_MYCTU Cyclopropane mycolic acid synthase 1 OS=Mycobacterium tuberculosis GN=cmaA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 117/247 (47%), Gaps = 13/247 (5%)
Query: 2 TYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT 61
TYSCA F+ + L+ Q+ K+ + + K + G +LD+GCGWG + V++
Sbjct: 32 TYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVV 91
Query: 62 GITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEE 121
G+TLS+ Q + + V + R L + Q + DRI+S G EH GH+ +
Sbjct: 92 GLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDE--PVDRIVSIGAFEHFGHERYDA 149
Query: 122 FFGCCESLLATHGLLVLQFISA--PDQCYDE-------YRLSPGFIKEYIFPGGCLPSLG 172
FF LL G+++L I+ P + ++ + FI IFPGG LPS+
Sbjct: 150 FFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIP 209
Query: 173 RVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFD 232
V S++G V ++++ HY +TL W + + +AL E + R + Y
Sbjct: 210 MVQEC-ASANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQAIALQSEEVYER-YMKYLT 267
Query: 233 YCAASFK 239
CA F+
Sbjct: 268 GCAEMFR 274
|
Catalyzes the conversion of a double bond to a cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|A5U866|CMAS1_MYCTA Cyclopropane mycolic acid synthase 1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=cmaA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 117/247 (47%), Gaps = 13/247 (5%)
Query: 2 TYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT 61
TYSCA F+ + L+ Q+ K+ + + K + G +LD+GCGWG + V++
Sbjct: 32 TYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVV 91
Query: 62 GITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEE 121
G+TLS+ Q + + V + R L + Q + DRI+S G EH GH+ +
Sbjct: 92 GLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDE--PVDRIVSIGAFEHFGHERYDA 149
Query: 122 FFGCCESLLATHGLLVLQFISA--PDQCYDE-------YRLSPGFIKEYIFPGGCLPSLG 172
FF LL G+++L I+ P + ++ + FI IFPGG LPS+
Sbjct: 150 FFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIP 209
Query: 173 RVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFD 232
V S++G V ++++ HY +TL W + + +AL E + R + Y
Sbjct: 210 MVQEC-ASANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQAIALQSEEVYER-YMKYLT 267
Query: 233 YCAASFK 239
CA F+
Sbjct: 268 GCAEMFR 274
|
Catalyzes the conversion of a double bond to a cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (taxid: 419947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q49807|CMAS2_MYCLE Cyclopropane mycolic acid synthase 2 OS=Mycobacterium leprae (strain TN) GN=cmaA2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 118/261 (45%), Gaps = 25/261 (9%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYSCA F+ LE Q K + + K + G +LDIGCGWG+ + +++
Sbjct: 42 MTYSCAYFERPDLTLEEAQRAKRDLALSKLGLEPGMTLLDIGCGWGSTMLHAIEKYDVNV 101
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKY----DRIISCGMIEH--- 113
G+TLS QL + ++K E DH R +L ++ DRIIS G EH
Sbjct: 102 IGLTLSANQLAHNKLKFAEI---DHTRTDRTKDVRLQGWEQFDEPVDRIISLGAFEHFAD 158
Query: 114 ----VGHDYMEEFFGCCESLLATHGLLVLQFISAPD-QCYDEYRLSP--------GFIKE 160
G + + FF C +L G ++L I PD + E L+ FI
Sbjct: 159 GAGDAGFERYDSFFKMCYDVLPDDGRMLLHTIIVPDAKETKELGLTTPMSLLRFIKFILT 218
Query: 161 YIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFN 220
IFPGG LP + +V +S++G VE IG HY TL W + E +AL
Sbjct: 219 EIFPGGRLPKISQV-DHYSSNAGFTVERYHRIGSHYVPTLNAWAAALEAHKDEAIALQ-G 276
Query: 221 EKFIRTWEYYFDYCAASFKSR 241
+ T+ +Y C+ F+ R
Sbjct: 277 RQIYDTYMHYLTGCSDLFRDR 297
|
Catalyzes the formation of trans cyclopropanated ketomycolate or methoxymycolate through the conversion of a double bond to a cyclopropane ring at the proximal position of an oxygenated mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. In the absence of MmaA2, CmaA2 has a non-specific cis-cyclopropanating activity and is able to catalyze the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium leprae (taxid: 1769) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q79FX6|MMAA2_MYCTU Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium tuberculosis GN=mmaA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 117/260 (45%), Gaps = 13/260 (5%)
Query: 2 TYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT 61
TYSCA F+ E LE Q+ K+ + + K + G +LDIGCGWG + Q
Sbjct: 32 TYSCAHFEREDMTLEEAQIAKIDLALGKLGLQPGMTLLDIGCGWGATMRRAIAQYDVNVV 91
Query: 62 GITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEE 121
G+TLS+ Q + + E R L + Q + DRI+S G EH GHD +
Sbjct: 92 GLTLSKNQAAHVQKSFDEMDTPRDRRVLLAGWEQFNEP--VDRIVSIGAFEHFGHDRHAD 149
Query: 122 FFGCCESLLATHGLLVLQFISA-PDQCYDEYRLSPG--------FIKEYIFPGGCLPSLG 172
FF +L G+L+L I+ Q ++ L FI IFPGG P++
Sbjct: 150 FFARAHKILPPDGVLLLHTITGLTRQQMVDHGLPLTLWLARFLKFIATEIFPGGQPPTIE 209
Query: 173 RVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFD 232
V ++ +G + +++ HY +TL W + +SE +A+ E + R + Y
Sbjct: 210 MV-EEQSAKTGFTLTRRQSLQPHYARTLDLWAEALQEHKSEAIAIQSEEVYER-YMKYLT 267
Query: 233 YCAASFKSRIIGDYQIVFSR 252
CA F+ I Q ++
Sbjct: 268 GCAKLFRVGYIDVNQFTLAK 287
|
Catalyzes the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. MmaA2 also catalyzes the biosynthesis of the cis-cyclopropanated methoxymycolates. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|A5U029|MMAA2_MYCTA Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mmaA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 117/260 (45%), Gaps = 13/260 (5%)
Query: 2 TYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT 61
TYSCA F+ E LE Q+ K+ + + K + G +LDIGCGWG + Q
Sbjct: 32 TYSCAHFEREDMTLEEAQIAKIDLALGKLGLQPGMTLLDIGCGWGATMRRAIAQYDVNVV 91
Query: 62 GITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEE 121
G+TLS+ Q + + E R L + Q + DRI+S G EH GHD +
Sbjct: 92 GLTLSKNQAAHVQKSFDEMDTPRDRRVLLAGWEQFNEP--VDRIVSIGAFEHFGHDRHAD 149
Query: 122 FFGCCESLLATHGLLVLQFISA-PDQCYDEYRLSPG--------FIKEYIFPGGCLPSLG 172
FF +L G+L+L I+ Q ++ L FI IFPGG P++
Sbjct: 150 FFARAHKILPPDGVLLLHTITGLTRQQMVDHGLPLTLWLARFLKFIATEIFPGGQPPTIE 209
Query: 173 RVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFD 232
V ++ +G + +++ HY +TL W + +SE +A+ E + R + Y
Sbjct: 210 MV-EEQSAKTGFTLTRRQSLQPHYARTLDLWAEALQEHKSEAIAIQSEEVYER-YMKYLT 267
Query: 233 YCAASFKSRIIGDYQIVFSR 252
CA F+ I Q ++
Sbjct: 268 GCAKLFRVGYIDVNQFTLAK 287
|
Catalyzes the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. MmaA2 also catalyzes the biosynthesis of the cis-cyclopropanated methoxymycolates. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (taxid: 419947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q7U1J9|MMAA2_MYCBO Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=cmaC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 117/260 (45%), Gaps = 13/260 (5%)
Query: 2 TYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT 61
TYSCA F+ E LE Q+ K+ + + K + G +LDIGCGWG + Q
Sbjct: 32 TYSCAHFEREDMTLEEAQIAKIDLALGKLGLQPGMTLLDIGCGWGATMRRAIAQYDVNVV 91
Query: 62 GITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEE 121
G+TLS+ Q + + E R L + Q + DRI+S G EH GHD +
Sbjct: 92 GLTLSKNQAAHVQKSFDEMDTPLDRRVLLAGWEQFNEP--VDRIVSIGAFEHFGHDRHAD 149
Query: 122 FFGCCESLLATHGLLVLQFISA-PDQCYDEYRLSPG--------FIKEYIFPGGCLPSLG 172
FF +L G+L+L I+ Q ++ L FI IFPGG P++
Sbjct: 150 FFARAHKILPPDGVLLLHTITGLTRQQMVDHGLPLTLWLARFLKFIATEIFPGGQPPTIE 209
Query: 173 RVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFD 232
V ++ +G + +++ HY +TL W + +SE +A+ E + R + Y
Sbjct: 210 MV-EEQSAKTGFTLTRRQSLQPHYARTLDLWAEALQEHKSEAIAIQSEEVYER-YMKYLT 267
Query: 233 YCAASFKSRIIGDYQIVFSR 252
CA F+ I Q ++
Sbjct: 268 GCAKLFRVGYIDVNQFTLAK 287
|
Catalyzes the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. MmaA2 also catalyzes the biosynthesis of the cis-cyclopropanated methoxymycolates. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium bovis (taxid: 1765) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P0A5P0|CMAS2_MYCTU Cyclopropane mycolic acid synthase 2 OS=Mycobacterium tuberculosis GN=cmaA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 112/257 (43%), Gaps = 20/257 (7%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYSCA F+ LE Q K + ++K + G +LDIGCGWG+ V +
Sbjct: 39 MTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNV 98
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH------- 113
G+TLSE Q + + E + + + + DRI+S G EH
Sbjct: 99 IGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP--VDRIVSLGAFEHFADGAGD 156
Query: 114 VGHDYMEEFFGCCESLLATHGLLVLQFISAPD--QCYDEYRLSP-------GFIKEYIFP 164
G + + FF +L G ++L I+ PD + + SP FI IFP
Sbjct: 157 AGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFP 216
Query: 165 GGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFI 224
GG LP + +V +S++G VE IG +Y TL W + E +AL E +
Sbjct: 217 GGRLPRISQV-DYYSSNAGWKVERYHRIGANYVPTLNAWADALQAHKDEAIALKGQETY- 274
Query: 225 RTWEYYFDYCAASFKSR 241
+ +Y C+ F+ +
Sbjct: 275 DIYMHYLRGCSDLFRDK 291
|
Catalyzes the formation of trans cyclopropanated ketomycolate or methoxymycolate through the conversion of a double bond to a cyclopropane ring at the proximal position of an oxygenated mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. In the absence of MmaA2, CmaA2 has a non-specific cis-cyclopropanating activity and is able to catalyze the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 272 | ||||||
| 224099967 | 862 | predicted protein [Populus trichocarpa] | 0.992 | 0.313 | 0.766 | 1e-123 | |
| 224107479 | 866 | predicted protein [Populus trichocarpa] | 0.992 | 0.311 | 0.766 | 1e-123 | |
| 296083705 | 881 | unnamed protein product [Vitis vinifera] | 0.992 | 0.306 | 0.766 | 1e-123 | |
| 359477758 | 865 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.312 | 0.766 | 1e-123 | |
| 296083708 | 898 | unnamed protein product [Vitis vinifera] | 0.992 | 0.300 | 0.755 | 1e-120 | |
| 225433227 | 865 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.312 | 0.755 | 1e-120 | |
| 449532842 | 291 | PREDICTED: probable fatty acid methyltra | 0.992 | 0.927 | 0.740 | 1e-119 | |
| 147791135 | 874 | hypothetical protein VITISV_025151 [Viti | 0.970 | 0.302 | 0.761 | 1e-119 | |
| 224107481 | 460 | predicted protein [Populus trichocarpa] | 1.0 | 0.591 | 0.731 | 1e-118 | |
| 255582094 | 868 | 2-heptaprenyl-1,4-naphthoquinone methylt | 0.996 | 0.312 | 0.726 | 1e-118 |
| >gi|224099967|ref|XP_002311690.1| predicted protein [Populus trichocarpa] gi|222851510|gb|EEE89057.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 207/270 (76%), Positives = 238/270 (88%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYSC +FK+E EDL+ QMRK+S+LIEKAR+SK E+L+IGCGWGTLAIE V++TGCKY
Sbjct: 593 MTYSCGVFKTEDEDLKDAQMRKISLLIEKARISKDHEILEIGCGWGTLAIEAVQRTGCKY 652
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
TGITLSEEQLKYAE+KV+EAGLQD I F+LCDYRQLPK +KYDRIISC MIE VGH+YME
Sbjct: 653 TGITLSEEQLKYAEMKVKEAGLQDRIAFHLCDYRQLPKTHKYDRIISCEMIEAVGHEYME 712
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
EFFGCCES+LA +GLLVLQFIS P++ YDEYR S FIKEYIFPGGCLPSL R+TSAM +
Sbjct: 713 EFFGCCESVLAENGLLVLQFISIPEERYDEYRQSSDFIKEYIFPGGCLPSLTRITSAMAA 772
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
SS LCVEH+ENIGIHYYQTL+ WRKNF+ KQ +ILALGFNEKFIRTWEYYFDYCAA FK+
Sbjct: 773 SSRLCVEHVENIGIHYYQTLKYWRKNFLEKQRKILALGFNEKFIRTWEYYFDYCAAGFKT 832
Query: 241 RIIGDYQIVFSRPGKVAAFRDPYEGFPSAY 270
+G+YQ+VFSRPG V A +PY+ FPSAY
Sbjct: 833 HTLGNYQVVFSRPGNVVALSNPYKSFPSAY 862
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107479|ref|XP_002314493.1| predicted protein [Populus trichocarpa] gi|222863533|gb|EEF00664.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 207/270 (76%), Positives = 236/270 (87%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYSCA+FK E EDL+ Q+RK+S+LIEKARV+K EVL+IGCGWGTLAIE+V++TGCKY
Sbjct: 597 MTYSCALFKKEDEDLKAAQIRKISLLIEKARVNKDHEVLEIGCGWGTLAIEVVQRTGCKY 656
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
TGITLSEEQLKYAE+KV+EAGLQD I+F+LCDYRQLPK +KYD IISC MIE VGH+YME
Sbjct: 657 TGITLSEEQLKYAELKVKEAGLQDSIKFHLCDYRQLPKTHKYDTIISCEMIEAVGHEYME 716
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
EFFGCCES+LA +GL VLQFIS P++ YDEYR S FIKEYIFPGGCLPSL R+TSAM S
Sbjct: 717 EFFGCCESVLAENGLFVLQFISIPEERYDEYRKSSDFIKEYIFPGGCLPSLTRITSAMAS 776
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
SS LCVEH+ENIGI YYQTLR WRKNF+ Q EIL+LGFNEKFIRTWEYYFDYCAA FK+
Sbjct: 777 SSRLCVEHVENIGIQYYQTLRYWRKNFLENQREILSLGFNEKFIRTWEYYFDYCAAGFKT 836
Query: 241 RIIGDYQIVFSRPGKVAAFRDPYEGFPSAY 270
+G+YQ+VFSRPG V A +PY GFPSAY
Sbjct: 837 HTLGNYQVVFSRPGNVVALSNPYRGFPSAY 866
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083705|emb|CBI23694.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 207/270 (76%), Positives = 236/270 (87%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYSCA+FK+E EDL+V Q+RK+S+LIEKAR+ K EVL+IGCGWG+LAIE+VKQTGCKY
Sbjct: 612 MTYSCAVFKTEGEDLKVAQLRKISLLIEKARIDKKHEVLEIGCGWGSLAIEVVKQTGCKY 671
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
TGIT S+EQLK+AE+KV+EAGLQD+IRF LCDYRQLP + KYDRIISCGM+E VGH+YME
Sbjct: 672 TGITPSKEQLKFAEMKVKEAGLQDNIRFLLCDYRQLPNSYKYDRIISCGMLESVGHEYME 731
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
EFFGCCES+LA GLLVLQFIS PD+ YDEYR S FIKEYIFPGGCLPSL RVT+AM +
Sbjct: 732 EFFGCCESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLPSLSRVTTAMAT 791
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
+S LCVEHLENIGIHYYQTLR WRKNF+ QS+I+ LGFNEKFIRTWEYYFDYCAA FK+
Sbjct: 792 ASRLCVEHLENIGIHYYQTLRHWRKNFLENQSKIIELGFNEKFIRTWEYYFDYCAAGFKT 851
Query: 241 RIIGDYQIVFSRPGKVAAFRDPYEGFPSAY 270
R +GDYQIVFSRPG AF DPY+ S Y
Sbjct: 852 RTLGDYQIVFSRPGNATAFSDPYKSVVSPY 881
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477758|ref|XP_002281923.2| PREDICTED: uncharacterized protein LOC100242555 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 207/270 (76%), Positives = 236/270 (87%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYSCA+FK+E EDL+V Q+RK+S+LIEKAR+ K EVL+IGCGWG+LAIE+VKQTGCKY
Sbjct: 596 MTYSCAVFKTEGEDLKVAQLRKISLLIEKARIDKKHEVLEIGCGWGSLAIEVVKQTGCKY 655
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
TGIT S+EQLK+AE+KV+EAGLQD+IRF LCDYRQLP + KYDRIISCGM+E VGH+YME
Sbjct: 656 TGITPSKEQLKFAEMKVKEAGLQDNIRFLLCDYRQLPNSYKYDRIISCGMLESVGHEYME 715
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
EFFGCCES+LA GLLVLQFIS PD+ YDEYR S FIKEYIFPGGCLPSL RVT+AM +
Sbjct: 716 EFFGCCESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLPSLSRVTTAMAT 775
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
+S LCVEHLENIGIHYYQTLR WRKNF+ QS+I+ LGFNEKFIRTWEYYFDYCAA FK+
Sbjct: 776 ASRLCVEHLENIGIHYYQTLRHWRKNFLENQSKIIELGFNEKFIRTWEYYFDYCAAGFKT 835
Query: 241 RIIGDYQIVFSRPGKVAAFRDPYEGFPSAY 270
R +GDYQIVFSRPG AF DPY+ S Y
Sbjct: 836 RTLGDYQIVFSRPGNATAFSDPYKSVVSPY 865
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083708|emb|CBI23697.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 204/270 (75%), Positives = 234/270 (86%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYSCA+FK+E EDL+V Q+RK+S+LIEK R+ K EVL+IGCGWG+LAIE+VK+TGCKY
Sbjct: 629 MTYSCAVFKTEGEDLKVAQLRKISLLIEKVRIDKKHEVLEIGCGWGSLAIEVVKRTGCKY 688
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
TGITLSEEQLK+AE+KV+EAGLQD+IRF LCDYRQL + KYDRIISC M+E VGH+YME
Sbjct: 689 TGITLSEEQLKFAEMKVKEAGLQDNIRFLLCDYRQLSDSYKYDRIISCEMLEAVGHEYME 748
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
EFFGCCES+LA GLLVLQFIS PD+ YDEYR S FIKEYIFPGGCLPSL RVT+AM +
Sbjct: 749 EFFGCCESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLPSLSRVTTAMAA 808
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
SS LC+EHLENIGIHYYQTLR WRKNF+ QS+I+ LGFNEKFIRTWEYYFDYCAA FK+
Sbjct: 809 SSRLCMEHLENIGIHYYQTLRHWRKNFLENQSKIIELGFNEKFIRTWEYYFDYCAAGFKT 868
Query: 241 RIIGDYQIVFSRPGKVAAFRDPYEGFPSAY 270
+G+YQIVFSRPG AAF +PYE S Y
Sbjct: 869 HTLGNYQIVFSRPGNAAAFSNPYESVVSTY 898
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433227|ref|XP_002281958.1| PREDICTED: uncharacterized protein LOC100249441 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 204/270 (75%), Positives = 234/270 (86%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYSCA+FK+E EDL+V Q+RK+S+LIEK R+ K EVL+IGCGWG+LAIE+VK+TGCKY
Sbjct: 596 MTYSCAVFKTEGEDLKVAQLRKISLLIEKVRIDKKHEVLEIGCGWGSLAIEVVKRTGCKY 655
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
TGITLSEEQLK+AE+KV+EAGLQD+IRF LCDYRQL + KYDRIISC M+E VGH+YME
Sbjct: 656 TGITLSEEQLKFAEMKVKEAGLQDNIRFLLCDYRQLSDSYKYDRIISCEMLEAVGHEYME 715
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
EFFGCCES+LA GLLVLQFIS PD+ YDEYR S FIKEYIFPGGCLPSL RVT+AM +
Sbjct: 716 EFFGCCESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLPSLSRVTTAMAA 775
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
SS LC+EHLENIGIHYYQTLR WRKNF+ QS+I+ LGFNEKFIRTWEYYFDYCAA FK+
Sbjct: 776 SSRLCMEHLENIGIHYYQTLRHWRKNFLENQSKIIELGFNEKFIRTWEYYFDYCAAGFKT 835
Query: 241 RIIGDYQIVFSRPGKVAAFRDPYEGFPSAY 270
+G+YQIVFSRPG AAF +PYE S Y
Sbjct: 836 HTLGNYQIVFSRPGNAAAFSNPYESVVSTY 865
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449532842|ref|XP_004173387.1| PREDICTED: probable fatty acid methyltransferase-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 200/270 (74%), Positives = 234/270 (86%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYSCAIFK E+EDL+V QMRK+S+LIEKAR++K VL+IGCGWG+LAIEIVK+TGC Y
Sbjct: 22 MTYSCAIFKGENEDLKVAQMRKISLLIEKARINKNHHVLEIGCGWGSLAIEIVKKTGCHY 81
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
TGITLSEEQLKYAE +V++A LQD IRF LCDYR+LP KYDRIISC MIE VGH++ME
Sbjct: 82 TGITLSEEQLKYAEKRVKDANLQDRIRFLLCDYRKLPSTEKYDRIISCEMIEAVGHEFME 141
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
+FFG CES+LA +GL VLQFIS PD+ Y+EYRLS FIKEYIFPGGCLP L R+T+AM +
Sbjct: 142 DFFGSCESVLAENGLFVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPCLSRLTTAMAN 201
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
+S LCVEHLENIGIHY+QTLRCWRKNF+ +S+IL LGF+E FIRTWEYYFDYCAA FKS
Sbjct: 202 ASRLCVEHLENIGIHYHQTLRCWRKNFLENKSKILQLGFDESFIRTWEYYFDYCAAGFKS 261
Query: 241 RIIGDYQIVFSRPGKVAAFRDPYEGFPSAY 270
+G+YQIV+SRPG VAAF +PY+G PSAY
Sbjct: 262 HTLGNYQIVYSRPGNVAAFTNPYQGIPSAY 291
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147791135|emb|CAN68017.1| hypothetical protein VITISV_025151 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 201/264 (76%), Positives = 232/264 (87%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYSCA+FK+E EDL+V Q+RK+S+LIEK R+ K EVL+IGCGWG+LAIE+VKQTGCKY
Sbjct: 583 MTYSCAVFKTEREDLKVAQLRKISLLIEKVRIDKKHEVLEIGCGWGSLAIEVVKQTGCKY 642
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
TGITLSEEQLK+AE+KV+EAGLQD+IRF LCDYRQL + KYDRIISC M+E VGH+YME
Sbjct: 643 TGITLSEEQLKFAEMKVKEAGLQDNIRFLLCDYRQLSDSYKYDRIISCEMLEAVGHEYME 702
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
EFFGCCES+LA GLLVLQFIS PD+ YDEYR S FIKEYIFPGGCLPSL RVT+AM +
Sbjct: 703 EFFGCCESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLPSLSRVTTAMAA 762
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
+S LC+EHLENIGIHYYQTLR WRKNF+ QS+I+ LGFNEKFIRTWEYYFDYCAA FK+
Sbjct: 763 ASRLCMEHLENIGIHYYQTLRHWRKNFLENQSKIIELGFNEKFIRTWEYYFDYCAAGFKT 822
Query: 241 RIIGDYQIVFSRPGKVAAFRDPYE 264
+G+YQIVFSRPG AAF +PY+
Sbjct: 823 HTLGNYQIVFSRPGNAAAFSNPYK 846
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107481|ref|XP_002314494.1| predicted protein [Populus trichocarpa] gi|222863534|gb|EEF00665.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 199/272 (73%), Positives = 228/272 (83%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
M YS AIFK+E EDL Q+RK+SVLIEKAR+ K E+LDIGCGWGT AIE+VKQTGCKY
Sbjct: 187 MAYSSAIFKTEDEDLNTAQLRKISVLIEKARIDKKHEILDIGCGWGTFAIEVVKQTGCKY 246
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
TG+TLS EQLKYAE+KV+EAGLQD+IR LCDYR+LPK KYDRI+SC MIEHVGH+YME
Sbjct: 247 TGLTLSVEQLKYAEMKVKEAGLQDNIRLLLCDYRELPKGYKYDRIVSCEMIEHVGHEYME 306
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
+FF CES LA GLLVLQFIS D+ YDEYR S FIKEYIFPGGCLPSL R+TSAM
Sbjct: 307 DFFSSCESALAEDGLLVLQFISIADERYDEYRRSSDFIKEYIFPGGCLPSLSRITSAMGV 366
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
+S LCVEH+ENIG HYY TLR WRKNF+ +S+ILA+GF+EKFIRTWEYYFDY +A FKS
Sbjct: 367 ASRLCVEHVENIGSHYYHTLRRWRKNFLENKSKILAMGFDEKFIRTWEYYFDYSSAGFKS 426
Query: 241 RIIGDYQIVFSRPGKVAAFRDPYEGFPSAYQY 272
+GDYQ+VFSRPG V A +PY+GFPSAYQ+
Sbjct: 427 YTLGDYQVVFSRPGNVEALGNPYKGFPSAYQH 458
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255582094|ref|XP_002531842.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative [Ricinus communis] gi|223528513|gb|EEF30540.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust.
Identities = 197/271 (72%), Positives = 237/271 (87%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYSCA+FK++ EDL+V Q+RK+S+LIEKAR+ K EVL+IGCGWG+LAIE+VK+TGCKY
Sbjct: 596 MTYSCAVFKTQDEDLKVAQLRKISLLIEKARIDKKHEVLEIGCGWGSLAIEVVKKTGCKY 655
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
TGITLSEEQLK AE KV++AGLQD+I+F LCDYR+LP++ KYDRIISCGMIEHVGH+YME
Sbjct: 656 TGITLSEEQLKIAEDKVKQAGLQDNIKFLLCDYRELPESYKYDRIISCGMIEHVGHEYME 715
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
EFF CCES+LA GLLVLQFI+ PD+ YDE R S F+KEYIFPGGCLPSL R+TSAM +
Sbjct: 716 EFFDCCESVLAEDGLLVLQFIAIPDKRYDEVRKSIDFLKEYIFPGGCLPSLYRITSAMRT 775
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
+S LC+EH+ENIG +YY TL+CWRKNF+ + +ILA+GF+EKFIRTWEYYFDYCAA FKS
Sbjct: 776 ASRLCMEHVENIGSNYYLTLKCWRKNFLKNKEKILAMGFDEKFIRTWEYYFDYCAAGFKS 835
Query: 241 RIIGDYQIVFSRPGKVAAFRDPYEGFPSAYQ 271
+ DYQIVFSRPG +AA +PY+GFPSAY
Sbjct: 836 YTLLDYQIVFSRPGNIAALGNPYKGFPSAYN 866
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 272 | ||||||
| TAIR|locus:2088712 | 867 | AT3G23510 [Arabidopsis thalian | 0.992 | 0.311 | 0.722 | 3.9e-108 | |
| TAIR|locus:2088070 | 867 | AT3G23530 [Arabidopsis thalian | 0.992 | 0.311 | 0.722 | 8.1e-108 | |
| TAIR|locus:2088717 | 461 | AT3G23470 [Arabidopsis thalian | 0.959 | 0.566 | 0.701 | 6.2e-101 | |
| DICTYBASE|DDB_G0283847 | 430 | DDB_G0283847 "cyclopropane fat | 0.952 | 0.602 | 0.452 | 1.9e-58 | |
| TIGR_CMR|GSU_2329 | 421 | GSU_2329 "cyclopropane-fatty-a | 0.922 | 0.596 | 0.396 | 1.2e-49 | |
| TIGR_CMR|SO_3379 | 418 | SO_3379 "cyclopropane-fatty-ac | 0.926 | 0.602 | 0.393 | 6e-48 | |
| UNIPROTKB|Q9KSY4 | 432 | VC_1122 "Cyclopropane-fatty-ac | 0.919 | 0.578 | 0.400 | 8.8e-47 | |
| TIGR_CMR|VC_1122 | 432 | VC_1122 "cyclopropane-fatty-ac | 0.919 | 0.578 | 0.400 | 8.8e-47 | |
| TIGR_CMR|BA_3460 | 390 | BA_3460 "cyclopropane-fatty-ac | 0.900 | 0.628 | 0.392 | 1.5e-44 | |
| TIGR_CMR|CPS_1385 | 385 | CPS_1385 "cyclopropane-fatty-a | 0.878 | 0.620 | 0.385 | 1.9e-44 |
| TAIR|locus:2088712 AT3G23510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1069 (381.4 bits), Expect = 3.9e-108, P = 3.9e-108
Identities = 195/270 (72%), Positives = 230/270 (85%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYS A+FKS+ EDL QMRK+S+LI+KAR+ K EVL+IGCGWGTLAIE+V++TGCKY
Sbjct: 595 MTYSSAVFKSDDEDLRTAQMRKISLLIDKARIEKDHEVLEIGCGWGTLAIEVVRRTGCKY 654
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
TGITLS EQLKYAE KV+EAGLQD I F L DYRQL A+KYDRIISC M+E VGH++ME
Sbjct: 655 TGITLSIEQLKYAEEKVKEAGLQDRITFELRDYRQLSDAHKYDRIISCEMLEAVGHEFME 714
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
FF CE+ LA GL+VLQFIS P++ Y+EYRLS FIKEYIFPG C+PSL +VTSAM+S
Sbjct: 715 MFFSRCEAALAEDGLMVLQFISTPEERYNEYRLSSDFIKEYIFPGACVPSLAKVTSAMSS 774
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
SS LC+EH+ENIGIHYYQTLR WRKNF+ +Q +I+ALGF++KF+RTWEYYFDYCAA FK+
Sbjct: 775 SSRLCIEHVENIGIHYYQTLRLWRKNFLERQKQIMALGFDDKFVRTWEYYFDYCAAGFKT 834
Query: 241 RIIGDYQIVFSRPGKVAAFRDPYEGFPSAY 270
R +GDYQ+VFSRPG VAAF D Y GFPSAY
Sbjct: 835 RTLGDYQLVFSRPGNVAAFADSYRGFPSAY 864
|
|
| TAIR|locus:2088070 AT3G23530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
Identities = 195/270 (72%), Positives = 230/270 (85%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYS A+FKS+ EDL QMRK+S+LI+KAR+ K EVL+IGCGWGTLAIE+V++TGCKY
Sbjct: 595 MTYSSAVFKSDDEDLRTAQMRKISLLIDKARIEKDHEVLEIGCGWGTLAIEVVRRTGCKY 654
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
TGITLS EQLKYAE KV+EAGLQD I F L DYRQL A KYDRIISC M+E VGH++ME
Sbjct: 655 TGITLSIEQLKYAEEKVKEAGLQDWITFELRDYRQLSDAQKYDRIISCEMLEAVGHEFME 714
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
FF CE+ LA +GL+VLQFIS P++ Y+EYRLS FIKEYIFPGGCLPSL RVT+AM+S
Sbjct: 715 MFFSRCEAALAENGLIVLQFISIPEERYNEYRLSSDFIKEYIFPGGCLPSLARVTTAMSS 774
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
SS LC+EH+ENIGIHYYQTLR WRKNF+ +Q +I+ALGF++KF+RTWEYYFDYCAA FK+
Sbjct: 775 SSRLCIEHVENIGIHYYQTLRLWRKNFLARQKQIMALGFDDKFVRTWEYYFDYCAAGFKT 834
Query: 241 RIIGDYQIVFSRPGKVAAFRDPYEGFPSAY 270
+G+YQ+VFSRPG VAAF D Y GFPSAY
Sbjct: 835 LTLGNYQLVFSRPGNVAAFADSYRGFPSAY 864
|
|
| TAIR|locus:2088717 AT3G23470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
Identities = 183/261 (70%), Positives = 214/261 (81%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
M YS AIFKSE+ED QMRK+S+LIEKAR+ K EVL++GCGWGT AIE+VK+TGCKY
Sbjct: 187 MMYSSAIFKSENEDPRTAQMRKISLLIEKARIEKNHEVLEMGCGWGTFAIEVVKRTGCKY 246
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
TGITLS EQLKYA+ KV+EAGLQ I F LCDYRQL A KYDRII+C MIE VGH++M+
Sbjct: 247 TGITLSIEQLKYAKAKVKEAGLQGRITFMLCDYRQLSDARKYDRIIACEMIEAVGHEFMD 306
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
+FF CCE LA +G+ VLQF + P+ YDE RL+ GFI EYIFPGGCLPSL RVTSAM S
Sbjct: 307 KFFSCCEDALAENGIFVLQFTAIPEALYDESRLTSGFITEYIFPGGCLPSLARVTSAMAS 366
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
SS LC+E++ENIGIHYY TLRCWRKNF+ +Q +I+ LGF++KFIRTWEYYFDYCAA FK+
Sbjct: 367 SSRLCIENVENIGIHYYHTLRCWRKNFLERQKQIIDLGFDDKFIRTWEYYFDYCAAGFKT 426
Query: 241 RIIGDYQIVFSRPGKVAAFRD 261
+ YQIVFSRPG VAAF D
Sbjct: 427 LTLRSYQIVFSRPGNVAAFGD 447
|
|
| DICTYBASE|DDB_G0283847 DDB_G0283847 "cyclopropane fatty acid synthase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 119/263 (45%), Positives = 168/263 (63%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
M+YSCA F +DLE Q K+ LI++A + K +L+IGCGWG LAIE VK+TGC+
Sbjct: 168 MSYSCAYFNHREQDLEEAQYNKIRKLIDQANLKKDHHLLEIGCGWGALAIEAVKRTGCRV 227
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
TGI+LS+EQLKY +V+E GL+D I DYR + ++D IISC M+E VG++ +
Sbjct: 228 TGISLSQEQLKYGRERVKEEGLEDRIDLQYIDYRNV--VGQFDSIISCEMLEAVGYENYK 285
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
+F E LL +G+LVLQFI+ DQ ++ + FI++YIFPGG LPS+ V ++ T
Sbjct: 286 TYFQSVERLLKPNGVLVLQFITFKDQDFEGLKKRCDFIQKYIFPGGLLPSITAVINSATE 345
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILAL--GFNEKFIRTWEYYFDYCAASF 238
+S L +++ G HY TL WR NF + +IL L GFN++FI ++YYF YC+A+F
Sbjct: 346 NSNLVLQNSVTFGTHYALTLDIWRNNFFSNKEKILNLKGGFNQQFINLFDYYFCYCSAAF 405
Query: 239 KSRIIGDYQIVFSRPGKVAAFRD 261
+R I Q+ FSRP + D
Sbjct: 406 DTRTINLIQMQFSRPCNIDNLND 428
|
|
| TIGR_CMR|GSU_2329 GSU_2329 "cyclopropane-fatty-acyl-phospholipid synthase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 101/255 (39%), Positives = 145/255 (56%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
M YSC IF+ +E + K + + E+L+IG GWG AI + GC+
Sbjct: 163 MAYSCGIFERNDSTMEEASVAKFDRICRALHLRPDMELLEIGTGWGGFAIHAAEHYGCRV 222
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
T T+S Q A ++REAGL D I DYR L ++DR++S MIE VGH ++
Sbjct: 223 TTTTISRRQFSLAAERIREAGLDDRITLLQRDYRDL--TGEFDRLVSIEMIEAVGHRHLP 280
Query: 121 EFFG-CCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMT 179
FF CC L A G+ ++Q I+ PD+ YD Y +P FI YIFPGGC PS G + A+
Sbjct: 281 AFFAVCCRRLKAD-GMGLIQAITVPDRIYDRYLKTPDFINRYIFPGGCCPSPGAMARAVA 339
Query: 180 SSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFK 239
+++ L + H E++ HY +TL+ WR+ F + + ALG +++FIR W+YY YC F
Sbjct: 340 AATDLRLVHREDLTPHYVRTLQEWRRTFHKRLDAVRALGCDDRFIRMWDYYLAYCEGGFA 399
Query: 240 SRIIGDYQIVFSRPG 254
R G Q+V++RPG
Sbjct: 400 ERFTGVEQVVYARPG 414
|
|
| TIGR_CMR|SO_3379 SO_3379 "cyclopropane-fatty-acyl-phospholipid synthase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 100/254 (39%), Positives = 143/254 (56%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
M YS A++ L Q+ K+ + E+ + GQ +L+IG GWG LAI K G
Sbjct: 157 MLYSSALYPHSEASLADAQLHKLKTICERLDLKPGQTLLEIGTGWGALAIYAAKNYGVHV 216
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
T T+S+ Q YA+ +V GL D + DYR L + +YDR++S MIE VGH+Y+
Sbjct: 217 TTTTISDAQYAYAKARVEREGLSDSVTLLTEDYRNL--SGQYDRLVSIEMIEAVGHEYLP 274
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
FF ESLL G ++LQ I+ DQ YD YR S FI+ YIFPGGCLPS+ ++ +
Sbjct: 275 GFFKKLESLLKPEGRMLLQAITISDQRYDSYRKSVDFIQRYIFPGGCLPSVQQMVGHLAK 334
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
+ + V ++++G+ Y +TL+ W NF ++I LG+ E FIR W++Y YC F
Sbjct: 335 RTDMQVWSIDDMGLDYAKTLKDWHDNFDRSVAQIQTLGYGEDFIRMWKFYLSYCEGGFLE 394
Query: 241 RIIGDYQIVFSRPG 254
R +V RPG
Sbjct: 395 RTTSTVHLVAVRPG 408
|
|
| UNIPROTKB|Q9KSY4 VC_1122 "Cyclopropane-fatty-acyl-phospholipid synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 101/252 (40%), Positives = 143/252 (56%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
M YS A+F LE Q K+ L E+ ++ VL+IG GWG +AI + + GCK
Sbjct: 182 MLYSSALFTQPELSLEQAQQAKMQRLCEQLQLKPTDHVLEIGTGWGAMAIYMAQHYGCKV 241
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
T T+SEEQ YA+ K+ GL + I DYR L + +YD+++S MIE VG Y+
Sbjct: 242 TTTTISEEQYAYAQQKITALGLNNQITLLKQDYRLL--SGQYDKLVSIEMIEAVGKAYLP 299
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
F C +LL G + +Q I+ DQ Y+ Y + FI++YIFPGG LPS+ +T T
Sbjct: 300 TFLSQCYALLKPRGKMAIQAITIADQRYESYSNNVDFIQKYIFPGGFLPSISVLTELATK 359
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
+GL + +L +IGI Y TL+ WR F + ++ LG++E+FIR W YYF YC F +
Sbjct: 360 RTGLVLRNLHDIGIDYALTLQHWRDRFEQQLPKVRDLGYDERFIRMWRYYFCYCEGGFLA 419
Query: 241 RIIGDYQIVFSR 252
R I + F R
Sbjct: 420 RSISTVHMTFER 431
|
|
| TIGR_CMR|VC_1122 VC_1122 "cyclopropane-fatty-acyl-phospholipid synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 101/252 (40%), Positives = 143/252 (56%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
M YS A+F LE Q K+ L E+ ++ VL+IG GWG +AI + + GCK
Sbjct: 182 MLYSSALFTQPELSLEQAQQAKMQRLCEQLQLKPTDHVLEIGTGWGAMAIYMAQHYGCKV 241
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
T T+SEEQ YA+ K+ GL + I DYR L + +YD+++S MIE VG Y+
Sbjct: 242 TTTTISEEQYAYAQQKITALGLNNQITLLKQDYRLL--SGQYDKLVSIEMIEAVGKAYLP 299
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
F C +LL G + +Q I+ DQ Y+ Y + FI++YIFPGG LPS+ +T T
Sbjct: 300 TFLSQCYALLKPRGKMAIQAITIADQRYESYSNNVDFIQKYIFPGGFLPSISVLTELATK 359
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
+GL + +L +IGI Y TL+ WR F + ++ LG++E+FIR W YYF YC F +
Sbjct: 360 RTGLVLRNLHDIGIDYALTLQHWRDRFEQQLPKVRDLGYDERFIRMWRYYFCYCEGGFLA 419
Query: 241 RIIGDYQIVFSR 252
R I + F R
Sbjct: 420 RSISTVHMTFER 431
|
|
| TIGR_CMR|BA_3460 BA_3460 "cyclopropane-fatty-acyl-phospholipid synthase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 99/252 (39%), Positives = 151/252 (59%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYSCA F++E + L Q KV+ +++K + KG +LDIGCGWG L KQ G K
Sbjct: 131 MTYSCAYFQNEQDSLTTAQHNKVNHILKKLNLQKGDTLLDIGCGWGELITAAAKQYGVKA 190
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
G+TLSEEQ A ++++ GL D + L DYR + K K+D+I+S GMIEHVG D +
Sbjct: 191 MGVTLSEEQYAKASERIKQEGLTDLVEVSLLDYRDI-KNQKFDKIVSVGMIEHVGKDNIT 249
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
++F +LL G+ +L I++P + G+I++YIFPGG +P++ + + MT+
Sbjct: 250 QYFETVNTLLNDGGISLLHCITSPANG----GATNGWIEKYIFPGGYVPAVNELITNMTN 305
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
V+ +E++ HY +TL+ W +NF E+ +E+FIR W Y + CAASF +
Sbjct: 306 EQFFIVD-VESLRRHYGKTLQHWARNFENVMEEVRKTK-DERFIRMWRLYLNACAASFFT 363
Query: 241 RIIGDYQIVFSR 252
I +Q VF++
Sbjct: 364 GNIDLHQFVFTK 375
|
|
| TIGR_CMR|CPS_1385 CPS_1385 "cyclopropane-fatty-acyl-phospholipid synthase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 93/241 (38%), Positives = 141/241 (58%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
M YS AI+ +E L+ Q K++ + ++ +++ +L+IG GWG LAI + GC+
Sbjct: 136 MMYSSAIYPTEDASLDEAQQHKLATICQRLSLNEHDHLLEIGTGWGGLAIYAAQHYGCRV 195
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
T T+S+ Q YA+ ++ + GL D I DYR L +D+++S MIE VG+D++
Sbjct: 196 TTTTISDAQYAYAQARIEKLGLTDKITLLKEDYRNL--TGVFDKVVSIEMIEAVGYDFLP 253
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
FF C L G L++Q I+ DQ +D Y+ + FI+ YIFPGG LPS+ +T +T
Sbjct: 254 SFFKQCNDRLKVGGKLLIQSITIADQRFDYYKNNVDFIQRYIFPGGFLPSVNVLTQNITD 313
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
S L VE L++IG+ Y +TL WR+NF+ E+ ++E F R W YYF YC +F
Sbjct: 314 HSELVVESLDDIGLDYAKTLAHWRENFLASWLELTQHDYDETFKRLWLYYFAYCEGAFLE 373
Query: 241 R 241
R
Sbjct: 374 R 374
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 272 | |||
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 4e-84 | |
| pfam02353 | 273 | pfam02353, CMAS, Mycolic acid cyclopropane synthet | 9e-75 | |
| PRK11705 | 383 | PRK11705, PRK11705, cyclopropane fatty acyl phosph | 3e-60 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 1e-19 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 2e-15 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 4e-12 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 2e-11 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 1e-10 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-10 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 2e-10 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 2e-10 | |
| smart00828 | 224 | smart00828, PKS_MT, Methyltransferase in polyketid | 3e-10 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 3e-09 | |
| PRK05134 | 233 | PRK05134, PRK05134, bifunctional 3-demethylubiquin | 1e-08 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 3e-08 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 5e-08 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 8e-08 | |
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 4e-07 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 1e-06 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 1e-05 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 1e-05 | |
| pfam01170 | 172 | pfam01170, UPF0020, Putative RNA methylase family | 4e-05 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 5e-05 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 8e-05 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 8e-05 | |
| COG2813 | 300 | COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans | 9e-05 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 1e-04 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 1e-04 | |
| PLN02396 | 322 | PLN02396, PLN02396, hexaprenyldihydroxybenzoate me | 2e-04 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 2e-04 | |
| COG4976 | 287 | COG4976, COG4976, Predicted methyltransferase (con | 5e-04 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 5e-04 | |
| PRK07580 | 230 | PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr | 5e-04 | |
| COG0030 | 259 | COG0030, KsgA, Dimethyladenosine transferase (rRNA | 6e-04 | |
| PRK11805 | 307 | PRK11805, PRK11805, N5-glutamine S-adenosyl-L-meth | 6e-04 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 0.001 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 0.001 | |
| cd08267 | 319 | cd08267, MDR1, Medium chain dehydrogenases/reducta | 0.001 | |
| TIGR03533 | 284 | TIGR03533, L3_gln_methyl, protein-(glutamine-N5) m | 0.001 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 0.001 | |
| TIGR00755 | 253 | TIGR00755, ksgA, dimethyladenosine transferase | 0.001 | |
| TIGR00406 | 288 | TIGR00406, prmA, ribosomal protein L11 methyltrans | 0.002 | |
| PRK00377 | 198 | PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr | 0.003 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 0.003 | |
| pfam04816 | 204 | pfam04816, DUF633, Family of unknown function (DUF | 0.004 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 252 bits (647), Expect = 4e-84
Identities = 105/252 (41%), Positives = 151/252 (59%), Gaps = 7/252 (2%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYSCA F+ LE Q K+ +++EK + G +LDIGCGWG LAI ++ G
Sbjct: 39 MTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTV 98
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
G+TLSEEQL YAE ++ GL+D++ L DYR + +DRI+S GM EHVG + +
Sbjct: 99 VGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE--PFDRIVSVGMFEHVGKENYD 156
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
+FF +LL G ++L I+ PDQ E+R P FI +YIFPGG LPS+ + S
Sbjct: 157 DFFKKVYALLKPGGRMLLHSITGPDQ---EFRRFPDFIDKYIFPGGELPSISEILELA-S 212
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240
+G V +E++ HY +TLR WR+ F + E +AL ++E+F R WE Y CAA+F++
Sbjct: 213 EAGFVVLDVESLRPHYARTLRLWRERFEANRDEAIAL-YDERFYRMWELYLAACAAAFRA 271
Query: 241 RIIGDYQIVFSR 252
I +Q ++
Sbjct: 272 GYIDVFQFTLTK 283
|
Length = 283 |
| >gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase | Back alignment and domain information |
|---|
Score = 228 bits (584), Expect = 9e-75
Identities = 93/249 (37%), Positives = 134/249 (53%), Gaps = 5/249 (2%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYSCA F+ LE Q K+ ++++K + G +LDIGCGWG L ++
Sbjct: 29 MTYSCAYFERPDMTLEEAQQAKLDLILDKLGLKPGMTLLDIGCGWGGLMRRAAERYDVNV 88
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
G+TLS+ Q K+A +V GLQ + L DYR + +DRI+S GM EHVGH+ +
Sbjct: 89 VGLTLSKNQYKHARQRVAAEGLQRKVEVLLQDYRDFDE--PFDRIVSVGMFEHVGHENYD 146
Query: 121 EFFGCCESLLATHGLLVLQFISAPD-QCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMT 179
FF +LL GL++L I+ E L FI +YIFPGG LPS+ + +
Sbjct: 147 TFFKKLYNLLPPGGLMLLHTITGLHPDETSERGLPLKFIDKYIFPGGELPSISMIVESS- 205
Query: 180 SSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFK 239
S +G VE +E++ HY +TL W +N + E +AL +E+F R W Y CA +F+
Sbjct: 206 SEAGFTVEDVESLRPHYAKTLDLWAENLQANKDEAIAL-QSEEFYRMWMLYLTGCAVAFR 264
Query: 240 SRIIGDYQI 248
I +Q
Sbjct: 265 IGYIDVHQF 273
|
This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. Length = 273 |
| >gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 3e-60
Identities = 102/265 (38%), Positives = 137/265 (51%), Gaps = 20/265 (7%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
M YSC +K + + LE Q K+ ++ K ++ G VLDIGCGWG LA + G
Sbjct: 135 MQYSCGYWK-DADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSV 193
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
G+T+S EQ K A + R AGL + L DYR L ++DRI+S GM EHVG
Sbjct: 194 VGVTISAEQQKLA--QERCAGLP--VEIRLQDYRDL--NGQFDRIVSVGMFEHVGPKNYR 247
Query: 121 EFFGCCESLLATHGLLVLQFISA--PDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAM 178
+F L GL +L I + D D + I +YIFP GCLPS+ ++ A
Sbjct: 248 TYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPW------INKYIFPNGCLPSVRQIAQA- 300
Query: 179 TSSSGLCV-EHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAAS 237
S GL V E N G Y +TL W +NF E LA ++E+F R W YY CA +
Sbjct: 301 --SEGLFVMEDWHNFGADYDRTLMAWHENFEAAWPE-LADNYSERFYRMWRYYLLSCAGA 357
Query: 238 FKSRIIGDYQIVFSRPGKVAAFRDP 262
F++R I +Q+VFS G +R P
Sbjct: 358 FRARDIQLWQVVFSPRGVEGGYRVP 382
|
Length = 383 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 1e-19
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 38 VLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97
VLD+GCG G LA+ + G + TG+ +S L+ A K A L D++ D +LP
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELAR-KAAAALLADNVEVLKGDAEELP 60
Query: 98 KA--NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141
+D IIS + H+ D F LL G+LVL +
Sbjct: 61 PEADESFDVIISDPPLHHLVEDL-ARFLEEARRLLKPGGVLVLTLV 105
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-15
Identities = 36/108 (33%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD 92
G VLDIGCG G+LAIE+ + G + TG+ LS E L+ A + + L I F D
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELAR-ENAKLALGPRITFVQGD 59
Query: 93 YRQLPKA-NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139
+D + G G + E SLL G LVL
Sbjct: 60 APDALDLLEGFDAVFIGG-----GGGDLLELLDALASLLKPGGRLVLN 102
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 4e-12
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
Query: 22 KVSVLIEKARVSK----GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKV 77
++ + + R +K G VLD+GCG G L+ + + G TGI SEE ++ A++
Sbjct: 29 RLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHA 87
Query: 78 REAGLQDHIRFYLCDYRQLPKANK--YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGL 135
++ L I + L + +D + ++EHV + F C LL G+
Sbjct: 88 KKDPLLK-IEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV--PDPQAFIRACAQLLKPGGI 144
Query: 136 LVLQFI 141
L I
Sbjct: 145 LFFSTI 150
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-11
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 39 LDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97
LD+GCG G LA + ++ G + TG+ LS E L A + +F + D LP
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAP-------RKFVVGDAEDLPF 53
Query: 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138
+D ++S ++ H+ E +L G LV+
Sbjct: 54 PDESFDVVVSSLVLHHL--PDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-10
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQD 84
LI + G +VLD+ CG G +A+ + K G + G+ +SE L+ A K+++ G+Q+
Sbjct: 43 LISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN 102
Query: 85 HIRFYLCDYRQLP-KANKYDRIISCGMIEHVGH 116
+ F + D LP N +D + + +V
Sbjct: 103 -VEFVVGDAENLPFPDNSFDAVTISFGLRNVTD 134
|
Length = 238 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-10
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 33 SKGQEVLDIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90
G +VLD+GCG G L + ++ G + GI +SEE ++ A+ ++ G +++ F
Sbjct: 2 KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGY-ENVEFIQ 60
Query: 91 CDYRQLPKA----NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQ 146
D +LP+ N +D +IS ++ H+ ++ +L G+L++ +
Sbjct: 61 GDIEELPQLQLEDNSFDVVISNEVLNHLPD--PDKVLEEIIRVLKPGGVLIVSDPVLLSE 118
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-10
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 35 GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR 94
G VLD+GCG G L+ + + G TGI SE+ ++ A++ E+G+ DYR
Sbjct: 60 GLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGVN-------IDYR 111
Query: 95 Q------LPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138
Q ++D + ++EHV E F C L+ G+L L
Sbjct: 112 QATVEDLASAGGQFDVVTCMEVLEHVPDP--ESFLRACAKLVKPGGILFL 159
|
Length = 243 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-10
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 39 LDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDH--IRFYLCDYRQ 95
LDIGCG GTL +++ G +YTG+ +S L+ A ++ GL D +R + D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLD-AI 59
Query: 96 LPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLL 136
+D +++ ++ H+ LL G+L
Sbjct: 60 DLDPGSFDVVVASNVLHHL--ADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-10
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 38 VLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL 96
VLD GCG+G+ I++ ++ + G T+S EQ + ++R GLQ IR + D +
Sbjct: 3 VLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD 62
Query: 97 PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL-QFISAPD 145
P + YD + +I H+ D M + F L G LVL FI+
Sbjct: 63 PFPDTYDLVFGFEVIHHI-KDKM-DLFSNISRHLKDGGHLVLADFIANLL 110
|
Length = 224 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 3e-09
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 30/143 (20%)
Query: 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYAEIKVREAGLQD 84
I+ V G +VLD+ CG G LAI + K G + G+ SE L K+R+ GL
Sbjct: 44 IKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSG 103
Query: 85 HIRFYLCDYRQLPKANKY-DRI-ISCGMIEHVGHDYME---EFF------GCCESLLATH 133
++ F D LP + D + I+ G + +V D + E + G
Sbjct: 104 NVEFVQGDAEALPFPDNSFDAVTIAFG-LRNV-PDIDKALREMYRVLKPGGR-------- 153
Query: 134 GLLVLQFISAP-----DQCYDEY 151
L++L+F S P + YD Y
Sbjct: 154 -LVILEF-SKPTNPPLKKAYDFY 174
|
Length = 239 |
| >gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 1e-08
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 20/116 (17%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93
G+ VLD+GCG G L+ E + + G TGI SEE ++ A + E+GL+ I DY
Sbjct: 48 FGKRVLDVGCGGGILS-ESMARLGADVTGIDASEENIEVARLHALESGLK--I-----DY 99
Query: 94 RQ-------LPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142
RQ ++D + M+EHV F C L+ GL+ F S
Sbjct: 100 RQTTAEELAAEHPGQFDVVTCMEMLEHV--PDPASFVRACAKLVKPGGLV---FFS 150
|
Length = 233 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-08
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 38 VLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97
+LD+GCG G + + + TG+ +S+E L+ A+ ++R+ G + +RF + D R LP
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPK--VRFVVADARDLP 58
Query: 98 KAN-KYDRIISCGM-IEHVGHDYMEEFFGCCESLLATHG 134
+D +I G+ ++++ + LL G
Sbjct: 59 FEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 5e-08
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 9/110 (8%)
Query: 38 VLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL 96
VLD G G G + + + G+ L E A ++ AGL +R + D R+L
Sbjct: 4 VLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAREL 63
Query: 97 P--KANKYDRIISC------GMIEHVGHDYMEEFFGCCESLLATHGLLVL 138
+D ++ D + F LL G+LV+
Sbjct: 64 LELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 8e-08
Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 17/116 (14%)
Query: 30 ARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFY 89
R+ G VLDIGCG G L + ++ G TG+ S + F
Sbjct: 18 PRLKPGGRVLDIGCGTGILLRLLRER-GFDVTGVDPSPAAVL------------IFSLFD 64
Query: 90 LCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145
D L A KYD I + ++EH+ LL G+L++ A D
Sbjct: 65 APDPAVL--AGKYDLITAFEVLEHL--PDPPALLQQLRELLKPGGVLLISTPLADD 116
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-07
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 14 DLEVGQMRKVSVLIEKARVSKGQE-----VLDIGCGWGTLAIEIVKQTGCKYTGITLSEE 68
D Q+R + + A V E ++D+GCG G + + ++ G GITLS
Sbjct: 93 DHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPV 152
Query: 69 QLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIIS--CGMIEHV 114
Q A GL D + F + D P + ++D + S G EH+
Sbjct: 153 QAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG--EHM 199
|
Length = 340 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 32 VSKGQEVLDIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYAEIKVREAGLQDHIRFY 89
V G VLD+GCG G A E+ ++ G + GI SE L A K R AGL ++ F
Sbjct: 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALA--KERAAGLGPNVEFV 74
Query: 90 LCDYRQLPKANKY-DRIISCGMIEHV 114
D LP + D + S +++H+
Sbjct: 75 RGDADGLPFPDGSFDAVRSDRVLQHL 100
|
Length = 241 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-05
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD 92
G +VLD+GCG+G L + K++ + T + ++ L+ A + GL ++ + D
Sbjct: 31 LGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGL-ENGEVFWSD 89
Query: 93 YRQLPKANKYDRIIS 107
+ K+D IIS
Sbjct: 90 LYSAVEPGKFDLIIS 104
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-05
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 25 VLIEKA--RVSKG-QEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA 80
L+E A R+ KG VLD+G G G +A+ + K+ + T + +S E L A
Sbjct: 75 ELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL 134
Query: 81 GLQDHIRFYLCDYRQLPKANKYDRIIS 107
GL D++ F D+ + K+D I+S
Sbjct: 135 GL-DNVEFLQSDWFEPLPGGKFDLIVS 160
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|216342 pfam01170, UPF0020, Putative RNA methylase family UPF0020 | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-05
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 24 SVLIEKARVSKGQEVLDIGCGWGTLAIE--IVKQTGCKYTGITLSEEQLKYAEIKVREAG 81
++ A G +LD CG GT+ IE ++ G + ++ A I AG
Sbjct: 18 RAMVNLAGWKPGDPLLDPMCGSGTILIEAALMGANIAPLYGSDIDWRMVQGARINAENAG 77
Query: 82 LQDHIRFYLCDYRQLPKAN-KYDRIIS 107
+ D I F D +LP N D I++
Sbjct: 78 VGDKIEFVQADAAKLPLLNGSVDAIVT 104
|
This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. Length = 172 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-05
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYAEIKVREAGLQ 83
++ V KGQ+VLD+ CG G LAIE+ K K TG+ S E L+ A+ K + L
Sbjct: 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKK---SELP 87
Query: 84 DHIRFYLCDYRQLP 97
+I F D LP
Sbjct: 88 LNIEFIQADAEALP 101
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 8e-05
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH 85
L E A KG VL++G G G +AI K G K G+ ++ ++ A+ + ++++
Sbjct: 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNN 73
Query: 86 -IRFYLCDYRQLPKANKYDRII 106
+ D + + +K+D I+
Sbjct: 74 GVEVIRSDLFEPFRGDKFDVIL 95
|
Length = 188 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 8e-05
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93
KG+ VLD GCG G L+IE+ K+ G + +SE+ ++ A + + + ++ F + D
Sbjct: 55 KGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL 113
Query: 94 RQLPKANKYDRIISCGMIEH 113
L ++D ++ ++ H
Sbjct: 114 LSL--CGEFDIVVCMDVLIH 131
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 9e-05
Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 41/152 (26%)
Query: 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQ---LKYAEIKVREAG 81
+L+E G +VLD+GCG+G L + + K++ +TL + ++ A + G
Sbjct: 149 LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAK--LTLVDVNARAVESARKNLAANG 206
Query: 82 LQDHIRFYLCDYRQLPKANKYDRIIS---------------CGMIEH------------- 113
+++ + P K+D IIS +I
Sbjct: 207 VENTEVWA--SNLYEPVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264
Query: 114 VG------HDYMEEFFGCCESLLATHGLLVLQ 139
V ++E FG E L G VL+
Sbjct: 265 VANRHLPYEKKLKELFGNVEVLAKNGGFKVLR 296
|
Length = 300 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 42.6 bits (97), Expect = 1e-04
Identities = 34/162 (20%), Positives = 53/162 (32%), Gaps = 9/162 (5%)
Query: 10 SEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEE 68
L + + VL + G VLDIGCG + + G G+ LS E
Sbjct: 24 DAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPE 83
Query: 69 QLKYAEIKVREAGLQDHIRFYLCDYRQ----LPKANKYDRIISCGMIEHVGHDYMEEFFG 124
L A + AGL + F + D + +D +IS ++ + +
Sbjct: 84 MLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVLHLLPP---AKALR 139
Query: 125 CCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGG 166
+L G LVL + GF + G
Sbjct: 140 ELLRVLKPGGRLVLSDLLRDGLLEGRLAALLGFGDPVLERGD 181
|
Length = 257 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-04
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 25 VLIEKA----RVSKGQEVLDIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVRE 79
L+E A + + VLD+G G G +A+ + K+ + T + +S E L A +
Sbjct: 95 ELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNA-K 153
Query: 80 AGLQDHIRFYLCDYRQLPKANKYDRIIS 107
GL + F D+ + ++D I+S
Sbjct: 154 HGLGARVEFLQGDWFEPLPGGRFDLIVS 181
|
Length = 275 |
| >gnl|CDD|178018 PLN02396, PLN02396, hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 2e-04
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 30 ARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFY 89
A+ +G + +DIGCG G L+ E + + G TG+ ++ +K A + + I Y
Sbjct: 127 AKPFEGLKFIDIGCGGGLLS-EPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIE-Y 184
Query: 90 LCDYRQL--PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLA 131
LC + + K+D ++S +IEHV + EF C+SL A
Sbjct: 185 LCTTAEKLADEGRKFDAVLSLEVIEHVANP--AEF---CKSLSA 223
|
Length = 322 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQD 84
L A V K +LD+G G G L + + ++T K G+ + EE + A+ V L++
Sbjct: 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEE 95
Query: 85 HIRFYLCDYRQLPKA---NKYDRIIS 107
I+ D ++ KA +D II
Sbjct: 96 RIQVIEADIKEFLKALVFASFDLIIC 121
|
Length = 248 |
| >gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 10/135 (7%)
Query: 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAG 81
++ +I KA + + +LD+GCG G + + + TG+ +SE L K E G
Sbjct: 113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEAL-RDMADRLTGVDISENMLA----KAHEKG 167
Query: 82 LQDHI-RFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140
L D + + + ++D I++ ++ ++G +E F LLA GL
Sbjct: 168 LYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA--LEGLFAGAAGLLAPGGLFAFSV 225
Query: 141 ISAPDQCYDEYRLSP 155
+ PD + L P
Sbjct: 226 ETLPDD--GGFVLGP 238
|
Length = 287 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 25 VLIEKARVSKGQ---EVLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREA 80
+L+E A Q +LD+G G G +AI + K+ + + +S + L A
Sbjct: 98 LLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERN 157
Query: 81 GLQDHIRFYLCDYRQLPKANKYDRIIS 107
GL + + L K+D I+S
Sbjct: 158 GLVRVLVVQSDLFEPLRG--KFDLIVS 182
|
Length = 280 |
| >gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 5e-04
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD 92
G +LD GCG G+L+I + ++ G K +S + ++ A + EAGL +I F + D
Sbjct: 63 TGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD 120
|
Length = 230 |
| >gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 6e-04
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 14/84 (16%)
Query: 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGI--------TLSEEQLKYAEIKVR 78
+E A +S G VL+IG G G L ++++ + T I L E Y + V
Sbjct: 23 VEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFAPYDNLTVI 81
Query: 79 EAGLQDHIRFYLCDYRQLPK--AN 100
D ++F Q K AN
Sbjct: 82 N---GDALKFDFPSLAQPYKVVAN 102
|
Length = 259 |
| >gnl|CDD|236988 PRK11805, PRK11805, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-04
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 38 VLDIGCGWGTLAIEIVKQTGCKY-------TGITLSEEQLKYAEIKVREAGLQDHIRFYL 90
+LD+ G G +AI C Y + +S + L AEI + GL+D +
Sbjct: 137 ILDLCTGSGCIAI------ACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIE 190
Query: 91 CD-YRQLPKANKYDRIIS 107
D + LP +YD I+S
Sbjct: 191 SDLFAALPG-RRYDLIVS 207
|
Length = 307 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 27 IEKARVSKGQEVLDIGCGWGTLAI---EIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ 83
+ + +S G VL+ G G G L V G T + E+ K A + E GL
Sbjct: 87 VARLGISPGSRVLEAGTGSGALTAYLARAVGPEG-HVTTYEIREDFAKTARENLSEFGLG 145
Query: 84 DHIRFYLCDYRQLPKANKYDRII 106
D + L D R+ D +
Sbjct: 146 DRVTLKLGDVREGIDEEDVDAVF 168
|
Length = 256 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.001
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 31 RVSKGQEVLDIGCGWGTLAI---EIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIR 87
V G LD+ CG +I E V G G+ SE L KV++AGL ++
Sbjct: 42 NVQAGTSALDVCCGTADWSIALAEAVGPEG-HVIGLDFSENMLSVGRQKVKDAGL-HNVE 99
Query: 88 FYLCDYRQLPKA-NKYD 103
+ +LP N +D
Sbjct: 100 LVHGNAMELPFDDNSFD 116
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 30/112 (26%), Positives = 40/112 (35%), Gaps = 24/112 (21%)
Query: 26 LIEKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ 83
L + +V GQ VL G G GT A++I K G TG+ S + VR G
Sbjct: 135 LRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVC-STRNAEL----VRSLGAD 189
Query: 84 DHIRFYLCDYRQ------LPKANKYDRIISCGMIEHVGHDYMEEFFGCCESL 129
+ I DY KYD I VG+ + +L
Sbjct: 190 EVI-----DYTTEDFVALTAGGEKYDVIFDA-----VGNSPF-SLYRASLAL 230
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319 |
| >gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.001
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 38 VLDIGCGWGTLAIEIVKQTGCKY-------TGITLSEEQLKYAEIKVREAGLQDHIRFYL 90
+LD+ G G +AI C Y + +S + L AEI + GL+D +
Sbjct: 125 ILDLCTGSGCIAI------ACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQ 178
Query: 91 CD-YRQLPKANKYDRIIS 107
D + LP KYD I+S
Sbjct: 179 SDLFAALPGR-KYDLIVS 195
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 284 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 36/134 (26%), Positives = 48/134 (35%), Gaps = 12/134 (8%)
Query: 13 EDLEVGQMRK---VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT-GCKYTGITLSEE 68
E E G M K ++ + K R G + DIG G G++ IE + I EE
Sbjct: 10 ERDEGGPMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEE 69
Query: 69 QLKYAEIKVREAGLQDHIRFYLCD-YRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCE 127
L+ E G+ D++ D LP D I I G+ EE
Sbjct: 70 ALELIERNAARFGV-DNLEVVEGDAPEALPDLPSPDAIF----IGGGGNI--EEILEAAW 122
Query: 128 SLLATHGLLVLQFI 141
L G LV I
Sbjct: 123 ERLKPGGRLVANAI 136
|
Length = 187 |
| >gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGI--------TLSEEQLKYAEIKV 77
++E A V +G VL+IG G G L ++K+ K T I L + Y +++
Sbjct: 21 IVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDRRLAERLRKLLSLYENLEI 79
Query: 78 REAGLQDHIRFYLCDYRQLPK 98
E D ++ L ++ + K
Sbjct: 80 IE---GDALKVDLNEFPKQLK 97
|
In both E. coli and Saccharomyces cerevisiae, this protein is responsible for the dimethylation of two adjacent adenosine residues in a conserved hairpin of 16S rRNA in bacteria, 18S rRNA in eukaryotes. This adjacent dimethylation is the only rRNA modification shared by bacteria and eukaryotes. A single member of this family is present in each of the first 20 completed microbial genomes. This protein is essential in yeast, but not in E. coli, where its deletion leads to resistance to the antibiotic kasugamycin. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase [Protein synthesis, tRNA and rRNA base modification]. Length = 253 |
| >gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.002
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90
K + V+D+GCG G L+I +K K GI + ++ A + D ++ L
Sbjct: 156 LDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL 215
Query: 91 CDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141
Y + P K D I+ ++ V + +F L+ G L+L I
Sbjct: 216 -IYLEQPIEGKADVIV-ANILAEVIKELYPQFS----RLVKPGGWLILSGI 260
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288 |
| >gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.003
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Query: 24 SVLIEKARVSKGQEVLDIGCGWGTLAIE---IVKQTGCKYTGITLSEEQLKYAEIKVREA 80
++ + K R+ KG +LDIGCG G++ +E +V +TG K + E+ + +
Sbjct: 30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETG-KVYAVDKDEKAINLTRRNAEKF 88
Query: 81 GLQDHIRFYLCDYRQ-LPKAN-KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138
G+ ++I + + L N K+DRI G G + ++E ++ G +V+
Sbjct: 89 GVLNNIVLIKGEAPEILFTINEKFDRIFIGG-----GSEKLKEIISASWEIIKKGGRIVI 143
Query: 139 QFI 141
I
Sbjct: 144 DAI 146
|
Length = 198 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQD 84
L+++ + VLDIGCG G L ++K+ ++ +S L A+ K+ E
Sbjct: 26 LLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLSE----- 80
Query: 85 HIRFYLCDYRQLPKA-NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138
+++F D +LP + +D I+S ++ D + +L GLL
Sbjct: 81 NVQFICGDAEKLPLEDSSFDLIVSNLALQWC-DDLSQALSELA-RVLKPGGLLAF 133
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|218278 pfam04816, DUF633, Family of unknown function (DUF633) | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.004
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 38 VLDIGCGWGTLAIEIVKQTGCKY-TGITLSEEQLKYAEIKVREAGLQDHIRFYLCD-YRQ 95
+ DIG L I +VK + +++ L+ A V++ GL + I L D
Sbjct: 1 LADIGSDHAYLPIYLVKNNLASFAIAGEVNKGPLESAVNNVKKNGLTERIDVRLGDGLAV 60
Query: 96 LPKANKYDRIISCGM 110
L + + D I+ GM
Sbjct: 61 LEELDVIDVIVIAGM 75
|
This family of proteins are uncharacterized have no known function. Length = 204 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 272 | |||
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 100.0 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 100.0 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 100.0 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.97 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.96 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.96 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.94 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.9 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.89 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.87 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.86 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.86 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.85 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.85 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.85 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.84 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.84 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.84 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.83 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.83 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.82 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.81 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.8 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.79 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.79 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.79 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.79 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.79 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.79 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.79 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.78 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.78 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.77 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.77 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.76 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.76 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.75 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.75 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.74 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.74 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.73 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.73 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.73 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.72 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.72 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.71 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.71 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.71 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.71 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.71 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.7 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.7 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.7 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.69 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.68 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.68 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.68 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.67 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.67 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.67 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.67 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.67 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.67 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.66 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.66 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.66 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.66 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.66 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.65 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.65 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.65 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.65 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.65 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.64 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.64 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.63 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.63 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.63 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.63 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.62 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.6 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.6 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.59 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.59 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.59 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.58 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.58 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.57 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.57 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.57 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.56 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.56 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.55 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.55 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.55 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.54 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.54 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.54 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.54 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.52 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.52 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.52 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.51 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.51 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.51 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.51 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.5 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.49 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.49 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.49 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.49 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.48 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.48 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.47 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.47 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.47 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.47 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.46 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.45 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.45 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.45 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.44 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.44 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.44 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.44 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.43 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.43 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.43 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.4 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.39 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.37 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.36 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.36 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.35 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.34 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.34 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.33 | |
| PLN02476 | 278 | O-methyltransferase | 99.32 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.31 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.31 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.3 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.3 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.29 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.28 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.28 | |
| PLN02366 | 308 | spermidine synthase | 99.26 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.26 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.26 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.26 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.24 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 99.23 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.22 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.22 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.21 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.2 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.19 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.18 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.18 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.17 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 99.16 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.15 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.15 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 99.14 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.13 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.13 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.13 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.13 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.12 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.12 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.12 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.1 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.1 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.09 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.07 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.06 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.05 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 99.04 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 99.04 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.04 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 99.03 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.02 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.0 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.0 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.98 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.98 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.97 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.96 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.94 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.93 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.93 | |
| PLN02823 | 336 | spermine synthase | 98.93 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.92 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.92 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.91 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.9 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.9 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.9 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.89 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.86 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.84 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.83 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.82 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.8 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.8 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.8 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.79 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.79 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.78 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.78 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.77 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.76 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.75 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.73 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.72 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.72 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.7 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.67 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.67 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.65 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.63 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.62 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.6 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.59 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.56 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.54 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.53 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.53 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.51 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.44 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.44 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.43 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.41 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.39 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.38 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.38 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.34 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.34 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.34 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 98.33 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.32 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.32 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.31 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.29 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.26 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.22 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 98.2 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 98.17 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 98.14 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.14 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 98.13 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.1 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.09 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.08 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 98.03 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 98.0 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.0 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.98 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.94 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.93 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.82 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.73 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.68 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.64 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 97.59 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.59 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 97.52 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.49 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.49 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 97.48 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.43 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.39 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 97.35 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.32 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 97.32 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.24 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 97.13 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 97.13 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.13 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.13 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.07 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.03 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 96.99 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 96.89 | |
| PHA01634 | 156 | hypothetical protein | 96.86 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.76 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.72 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.7 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 96.6 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.59 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 96.46 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 96.45 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.41 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.4 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.32 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 96.27 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.27 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 96.23 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 96.14 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 96.13 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 96.06 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.99 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.93 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 95.92 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 95.77 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 95.75 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.73 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.68 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 95.67 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 95.58 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 95.57 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 95.57 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.57 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 95.56 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 95.56 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 95.52 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 95.5 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 95.49 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 95.3 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.29 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 95.27 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 95.19 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 95.15 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 95.13 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 95.03 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.99 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 94.89 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 94.84 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 94.72 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 94.61 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 94.6 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 94.41 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 94.4 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 94.28 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.25 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 94.16 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 94.11 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 94.1 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 94.1 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 93.75 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 93.61 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 93.61 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 93.56 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 93.35 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 93.32 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 93.31 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 93.18 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 93.17 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 93.14 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 93.09 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 93.07 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 93.06 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 92.99 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 92.8 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 92.73 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.7 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 92.69 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 92.67 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 92.35 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 92.32 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 92.24 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 92.12 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 92.11 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 92.06 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 91.94 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 91.92 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 91.92 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 91.8 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 91.77 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 91.67 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 91.64 | |
| PLN02494 | 477 | adenosylhomocysteinase | 91.63 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 91.53 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 91.51 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 91.25 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 91.24 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 91.09 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 91.02 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 90.87 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 90.87 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 90.82 | |
| COG5379 | 414 | BtaA S-adenosylmethionine:diacylglycerol 3-amino-3 | 90.78 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 90.73 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 90.63 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 90.49 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 90.37 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 90.15 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 90.1 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 90.06 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 89.87 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 89.85 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 89.7 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 89.67 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 89.5 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 89.44 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 89.44 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 89.28 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 89.26 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 89.13 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 89.12 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 88.93 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 88.93 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 88.82 | |
| PRK13699 | 227 | putative methylase; Provisional | 88.63 | |
| cd08235 | 343 | iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ | 88.59 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 88.55 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 88.28 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 88.28 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 88.18 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 87.86 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 87.6 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 87.53 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 87.35 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 87.32 | |
| COG5379 | 414 | BtaA S-adenosylmethionine:diacylglycerol 3-amino-3 | 87.16 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 87.01 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 86.99 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 86.97 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 86.87 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 86.77 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 86.77 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 86.57 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 86.43 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 86.26 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 86.11 | |
| cd08284 | 344 | FDH_like_2 Glutathione-dependent formaldehyde dehy | 85.92 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 85.83 | |
| cd08270 | 305 | MDR4 Medium chain dehydrogenases/reductase (MDR)/z | 85.66 | |
| cd08282 | 375 | PFDH_like Pseudomonas putida aldehyde-dismutating | 85.56 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 85.38 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 85.25 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 85.14 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 85.03 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 85.0 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 85.0 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 84.98 | |
| cd08267 | 319 | MDR1 Medium chain dehydrogenases/reductase (MDR)/z | 84.88 | |
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 84.79 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 84.42 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 84.35 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 84.22 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 84.2 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 84.19 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 84.01 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 83.88 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 83.68 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 83.56 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 83.48 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 83.46 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 83.33 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 83.29 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 83.22 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 83.18 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 83.15 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 83.05 | |
| KOG2782 | 303 | consensus Putative SAM dependent methyltransferase | 82.99 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 82.87 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 82.69 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 82.64 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 82.47 | |
| PF07109 | 97 | Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl | 82.35 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 82.27 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 82.06 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 82.05 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 81.88 | |
| cd05289 | 309 | MDR_like_2 alcohol dehydrogenase and quinone reduc | 81.61 | |
| PF12242 | 78 | Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2 | 81.6 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 81.53 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 81.51 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.45 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 81.4 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.32 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 80.89 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 80.59 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 80.54 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 80.41 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 80.32 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 80.21 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 80.21 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 80.18 |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-52 Score=349.20 Aligned_cols=244 Identities=50% Similarity=0.880 Sum_probs=203.6
Q ss_pred CcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 024096 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272)
Q Consensus 1 ~~y~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272)
|+||||+|.+++++|++||.++++.+++++++++|++|||||||+|+++..++++.+++|+|+++|+++.+.++++++..
T Consensus 29 m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~ 108 (273)
T PF02353_consen 29 MKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREA 108 (273)
T ss_dssp ---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCS
T ss_pred CCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CCCCCeEEEEcccCCCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCc-chhhh
Q 024096 81 GLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLS-PGFIK 159 (272)
Q Consensus 81 g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-~~~~~ 159 (272)
|+++++++...|..+++ .+||.|+|.++++|++.++.+.+++++.++|||||+++++.++.+.......... ..|+.
T Consensus 109 gl~~~v~v~~~D~~~~~--~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~ 186 (273)
T PF02353_consen 109 GLEDRVEVRLQDYRDLP--GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIR 186 (273)
T ss_dssp TSSSTEEEEES-GGG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHH
T ss_pred CCCCceEEEEeeccccC--CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEE
Confidence 99999999999999877 4999999999999999999999999999999999999999988777654443332 48999
Q ss_pred hcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHHHHHHHHHh
Q 024096 160 EYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFK 239 (272)
Q Consensus 160 ~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~f~ 239 (272)
+|+||++.+|+.+++.. ..+++||+|.++++++.||.+|++.|+++|.++++++.++ |++.|+|+|+.|+++|+++|+
T Consensus 187 kyiFPgg~lps~~~~~~-~~~~~~l~v~~~~~~~~hY~~Tl~~W~~~f~~~~~~i~~~-~~~~f~r~w~~yl~~~~~~F~ 264 (273)
T PF02353_consen 187 KYIFPGGYLPSLSEILR-AAEDAGLEVEDVENLGRHYARTLRAWRENFDANREEIIAL-FDEEFYRMWRYYLAYCAAGFR 264 (273)
T ss_dssp HHTSTTS---BHHHHHH-HHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTHHHHHHH-SHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeCCCCCCCCHHHHHH-HHhcCCEEEEEEEEcCcCHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999986 4556999999999999999999999999999999999998 999999999999999999999
Q ss_pred cCCccEEEE
Q 024096 240 SRIIGDYQI 248 (272)
Q Consensus 240 ~g~~~~~~~ 248 (272)
.|.++.+||
T Consensus 265 ~g~~~~~Q~ 273 (273)
T PF02353_consen 265 AGSIDVFQI 273 (273)
T ss_dssp TTSCEEEEE
T ss_pred CCCCeEEeC
Confidence 999999997
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=336.34 Aligned_cols=245 Identities=42% Similarity=0.797 Sum_probs=232.9
Q ss_pred CcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 024096 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272)
Q Consensus 1 ~~y~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272)
|+|||+||++++.+|++||..+++.+++++.++||++|||||||+|.+++++|++.+++|+|+++|++|.+.++++++..
T Consensus 39 ~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~ 118 (283)
T COG2230 39 MTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAAR 118 (283)
T ss_pred CceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred CCCCCeEEEEcccCCCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhh
Q 024096 81 GLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKE 160 (272)
Q Consensus 81 g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 160 (272)
|++++++++..|..++. +.||.|+|.++++|++.++.+.+++++.++|+|||++++++++.++.... ....|+.+
T Consensus 119 gl~~~v~v~l~d~rd~~--e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~ 193 (283)
T COG2230 119 GLEDNVEVRLQDYRDFE--EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR---RFPDFIDK 193 (283)
T ss_pred CCCcccEEEeccccccc--cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc---cchHHHHH
Confidence 99989999999999987 45999999999999999999999999999999999999999998776543 56789999
Q ss_pred cccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHHHHHHHHHhc
Q 024096 161 YIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240 (272)
Q Consensus 161 ~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~f~~ 240 (272)
|+||++.+|+...+... .+++||.|...+.++.||.+|+..|.++|+++++++.++ +++.++++|+.|+..|+.+|+.
T Consensus 194 yiFPgG~lPs~~~i~~~-~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~~~~~~a~~~-~~e~~~r~w~~yl~~~~~~Fr~ 271 (283)
T COG2230 194 YIFPGGELPSISEILEL-ASEAGFVVLDVESLRPHYARTLRLWRERFEANRDEAIAL-YDERFYRMWELYLAACAAAFRA 271 (283)
T ss_pred hCCCCCcCCCHHHHHHH-HHhcCcEEehHhhhcHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999998855 557999999999999999999999999999999999988 9999999999999999999999
Q ss_pred CCccEEEEEEEe
Q 024096 241 RIIGDYQIVFSR 252 (272)
Q Consensus 241 g~~~~~~~~~~k 252 (272)
|.+..+|+++.|
T Consensus 272 ~~~~~~q~~~~k 283 (283)
T COG2230 272 GYIDVFQFTLTK 283 (283)
T ss_pred CCceEEEEEeeC
Confidence 999999999976
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=303.10 Aligned_cols=240 Identities=38% Similarity=0.708 Sum_probs=215.6
Q ss_pred CcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 024096 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272)
Q Consensus 1 ~~y~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272)
|+|||++|.. .++|.+||..+++.+++++.+.++.+|||||||+|.++..+++..+++|+|+|+|+.+++.++++..
T Consensus 135 m~ys~g~~~~-~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~-- 211 (383)
T PRK11705 135 MQYSCGYWKD-ADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA-- 211 (383)
T ss_pred CcccccccCC-CCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--
Confidence 7899999975 4799999999999999999999999999999999999999998778899999999999999999874
Q ss_pred CCCCCeEEEEcccCCCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhh
Q 024096 81 GLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKE 160 (272)
Q Consensus 81 g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 160 (272)
++ ++++...|..+++ ++||.|++..+++|++.++...+++++.++|||||+++++++..+... .....++.+
T Consensus 212 ~l--~v~~~~~D~~~l~--~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~----~~~~~~i~~ 283 (383)
T PRK11705 212 GL--PVEIRLQDYRDLN--GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTD----TNVDPWINK 283 (383)
T ss_pred cC--eEEEEECchhhcC--CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC----CCCCCCcee
Confidence 33 4788888987763 789999999999999888888999999999999999999877644321 223467889
Q ss_pred cccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHHHHHHHHHhc
Q 024096 161 YIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240 (272)
Q Consensus 161 ~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~f~~ 240 (272)
|++|++.+|+.+++... .+ .||.+.++++++.||.+|+..|.++|.++++++.+ +|++.|.|+|++|+.+|+++|+.
T Consensus 284 yifp~g~lps~~~i~~~-~~-~~~~v~d~~~~~~hy~~TL~~W~~~f~~~~~~~~~-~~~~~~~r~w~~yl~~~~~~F~~ 360 (383)
T PRK11705 284 YIFPNGCLPSVRQIAQA-SE-GLFVMEDWHNFGADYDRTLMAWHENFEAAWPELAD-NYSERFYRMWRYYLLSCAGAFRA 360 (383)
T ss_pred eecCCCcCCCHHHHHHH-HH-CCcEEEEEecChhhHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999997754 44 69999999999999999999999999999999977 79999999999999999999999
Q ss_pred CCccEEEEEEEeCC
Q 024096 241 RIIGDYQIVFSRPG 254 (272)
Q Consensus 241 g~~~~~~~~~~k~~ 254 (272)
|.++.+|++++||+
T Consensus 361 ~~~~~~q~~~~~~~ 374 (383)
T PRK11705 361 RDIQLWQVVFSPRG 374 (383)
T ss_pred CCceEEEEEEEeCC
Confidence 99999999999987
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=204.43 Aligned_cols=204 Identities=19% Similarity=0.273 Sum_probs=170.8
Q ss_pred CEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhcc
Q 024096 36 QEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHV 114 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~ 114 (272)
.+|||||||+|..+..+++. ++++++|+|+|+.+++.+++++...|+.+++++...|+.+.+.+++||+|++..+++|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 37999999999999999987 56899999999999999999999988888999999998766645689999999999999
Q ss_pred ChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCc
Q 024096 115 GHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGI 194 (272)
Q Consensus 115 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~ 194 (272)
+ +...+++++.++|||||++++.++...... . ....... ..+++..++.+.+ +++||.+.+..+++.
T Consensus 81 ~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~--~~~~~~~------~~~~s~~~~~~~l-~~~Gf~~~~~~~~~~ 147 (224)
T smart00828 81 K--DKMDLFSNISRHLKDGGHLVLADFIANLLS--A--IEHEETT------SYLVTREEWAELL-ARNNLRVVEGVDASL 147 (224)
T ss_pred C--CHHHHHHHHHHHcCCCCEEEEEEcccccCc--c--ccccccc------cccCCHHHHHHHH-HHCCCeEEEeEECcH
Confidence 4 568999999999999999999876532110 0 0011111 2357888887555 469999999999999
Q ss_pred cHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCccEEEEEEEeCCC
Q 024096 195 HYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKSRIIGDYQIVFSRPGK 255 (272)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~k~~~ 255 (272)
+|..++ |..+|.++.+++...++++.+.+.|..|..+|++ |+.|.+++.|++++|+..
T Consensus 148 ~~~~~l--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~ 205 (224)
T smart00828 148 EIANFL--YDPGFEDNLERLYQDDLDEVTKRHFRGIANLGKL-LEKGLASYALLIVQKDEF 205 (224)
T ss_pred hHhhhc--cChhHHHHHHHhccccchHHHHHHHhhHHHHHHH-HHhchHhhEEEEEecccc
Confidence 998755 8899999999998878899899999999888887 999999999999999843
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=208.49 Aligned_cols=241 Identities=20% Similarity=0.250 Sum_probs=178.6
Q ss_pred cccccCCC--CCCHHHHHHHHHHHHHHHcCC-----CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHH
Q 024096 4 SCAIFKSE--HEDLEVGQMRKVSVLIEKARV-----SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIK 76 (272)
Q Consensus 4 ~~~~~~~~--~~~l~~aq~~~~~~l~~~l~~-----~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~ 76 (272)
.++||..+ ..++.++|.++++.+++.+.+ .++.+|||||||+|.++..+++..+++|+|+|+|+.+++.++++
T Consensus 81 h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~ 160 (340)
T PLN02244 81 HHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANAL 160 (340)
T ss_pred eeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH
Confidence 46788764 578999999999999999987 68899999999999999999987688999999999999999999
Q ss_pred HHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCcccc--ccC
Q 024096 77 VREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDE--YRL 153 (272)
Q Consensus 77 ~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~~~ 153 (272)
.+..++.+++.++++|+.+++ ++++||+|++..+++|++ +...+++++.++|||||++++.++......... ...
T Consensus 161 ~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~--d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~ 238 (340)
T PLN02244 161 AAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMP--DKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKP 238 (340)
T ss_pred HHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccC--CHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCH
Confidence 998888778999999999988 678999999999999995 458999999999999999999887643221111 100
Q ss_pred c-----chhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhh--HHHHHhccCChHHHHH
Q 024096 154 S-----PGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGK--QSEILALGFNEKFIRT 226 (272)
Q Consensus 154 ~-----~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~ 226 (272)
. ......+..|. ..+.+++. .+++++||..+++++++.+..+ .|....... ...+. +....+...
T Consensus 239 ~~~~~~~~i~~~~~~p~--~~s~~~~~-~~l~~aGf~~v~~~d~s~~v~~---~~~~~~~~~~~~~~~~--~~~~~~~~~ 310 (340)
T PLN02244 239 DEQKLLDKICAAYYLPA--WCSTSDYV-KLAESLGLQDIKTEDWSEHVAP---FWPAVIKSALTLKGLF--GLLTSGWAT 310 (340)
T ss_pred HHHHHHHHHHhhccCCC--CCCHHHHH-HHHHHCCCCeeEeeeCcHHHHH---HHHHHHHHhcCHHHHH--HHHHHHHHH
Confidence 0 01112222221 23667776 4556799999999998865444 333222111 11111 111223334
Q ss_pred HHHHHH--HHHHHHhcCCccEEEEEEEeCC
Q 024096 227 WEYYFD--YCAASFKSRIIGDYQIVFSRPG 254 (272)
Q Consensus 227 w~~~~~--~~~~~f~~g~~~~~~~~~~k~~ 254 (272)
|+..+. ....+|+.|.+.+..|+++||.
T Consensus 311 ~~~~l~~~~~~~~~~~g~~~~~~~~~~kp~ 340 (340)
T PLN02244 311 IRGALVMPLMIKGFKKGLIKFAVITCRKPL 340 (340)
T ss_pred HhhhhHHHHHHHHHhcCCceeeEEEEeCCC
Confidence 554433 5677899999999999999983
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=194.69 Aligned_cols=223 Identities=19% Similarity=0.230 Sum_probs=182.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KA 99 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~ 99 (272)
.....+++.+.+.++.+|||||||+|..+..+++..+++|+|+|+|+.+++.++++... .+++.+.++|+.+.+ ++
T Consensus 39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~ 115 (263)
T PTZ00098 39 EATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPE 115 (263)
T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCC
Confidence 34577888999999999999999999999999876678999999999999999987653 257999999998877 66
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhccc-CCCCCCCHHHHHHHh
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIF-PGGCLPSLGRVTSAM 178 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~l 178 (272)
++||+|++..+++|++.+++..++++++++|||||+++++++....... . ......+.. ....+++.+++.+ +
T Consensus 116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~-~ 189 (263)
T PTZ00098 116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN--W---DEEFKAYIKKRKYTLIPIQEYGD-L 189 (263)
T ss_pred CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC--c---HHHHHHHHHhcCCCCCCHHHHHH-H
Confidence 8999999999999997667899999999999999999998886543210 1 111111111 1224567778874 5
Q ss_pred hcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCccEEEEEEEeC
Q 024096 179 TSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKSRIIGDYQIVFSRP 253 (272)
Q Consensus 179 ~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~k~ 253 (272)
++++||.++..++++..+...+....+.+.++++++... +++.++..+..-+..+-...+.|.+.+..+.++||
T Consensus 190 l~~aGF~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wg~~~~~~~ 263 (263)
T PTZ00098 190 IKSCNFQNVVAKDISDYWLELLQVELKKLEEKKEEFLKL-YSEKEYNSLKDGWTRKIKDTKRKLQKWGYFKAQKM 263 (263)
T ss_pred HHHCCCCeeeEEeCcHHHHHHHHHHHHHHHHhHHHHHHh-cCHHHHHHHHHHHHHHHHHhhccccccceEeecCC
Confidence 557999999999999888888888888888888888875 88888888888888888889999999999999985
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=199.23 Aligned_cols=219 Identities=19% Similarity=0.181 Sum_probs=177.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANK 101 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~ 101 (272)
.+.+++.+.+.++.+|||||||+|..+..+++..+++++|+|+|+.+++.|+++.. +...++.+.++|+.+.+ ++++
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCC
Confidence 45677777788889999999999999999998778899999999999999988765 33457999999998887 5678
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhccc-CCCCCCCHHHHHHHhhc
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIF-PGGCLPSLGRVTSAMTS 180 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~l~~ 180 (272)
||+|++..+++|++ ++..++++++++|||||++++.++........ ..+..++. .+..+++..++.+ +++
T Consensus 333 fD~I~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~-~l~ 403 (475)
T PLN02336 333 FDVIYSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRSPGTPS------PEFAEYIKQRGYDLHDVQAYGQ-MLK 403 (475)
T ss_pred EEEEEECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccCCCCCc------HHHHHHHHhcCCCCCCHHHHHH-HHH
Confidence 99999999999994 56899999999999999999998765432211 11112222 2345677888764 556
Q ss_pred CCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCccEEEEEEEeC
Q 024096 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKSRIIGDYQIVFSRP 253 (272)
Q Consensus 181 ~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~k~ 253 (272)
++||.+..+++++.+|..++..|...+.++..++... +++..+......+......++.|.++++.++|+|.
T Consensus 404 ~aGF~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~wg~~~a~k~ 475 (475)
T PLN02336 404 DAGFDDVIAEDRTDQFLQVLQRELDAVEKEKDEFISD-FSEEDYNDIVGGWKAKLVRSSSGEQKWGLFIAKKK 475 (475)
T ss_pred HCCCeeeeeecchHHHHHHHHHHHHHHHhCHHHHHHh-cCHHHHHHHHHhHHHHHhhhcCCceeeEEEEEecC
Confidence 7999999999999999999999999999888887764 77777777666666667777889999999999985
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=166.23 Aligned_cols=126 Identities=27% Similarity=0.434 Sum_probs=111.5
Q ss_pred HHHHHH-HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC
Q 024096 18 GQMRKV-SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272)
Q Consensus 18 aq~~~~-~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272)
.++..+ +.+++.+...+|.+|||+|||||..+..+++. ..++|+|+|+|+.|++.++++..+.+..+ ++++++|+++
T Consensus 34 g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~ 112 (238)
T COG2226 34 GLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAEN 112 (238)
T ss_pred cchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhh
Confidence 334444 45566667778999999999999999999998 66899999999999999999999888764 9999999999
Q ss_pred CC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCC
Q 024096 96 LP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272)
Q Consensus 96 ~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272)
+| ++++||+|.+...+++++ +++.+|++++|+|||||++++.++..+..
T Consensus 113 LPf~D~sFD~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 113 LPFPDNSFDAVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred CCCCCCccCEEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 99 899999999999999995 66999999999999999999988887654
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-23 Score=169.91 Aligned_cols=130 Identities=28% Similarity=0.406 Sum_probs=91.6
Q ss_pred CHHHHHHHHHH-HHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 024096 14 DLEVGQMRKVS-VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90 (272)
Q Consensus 14 ~l~~aq~~~~~-~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~ 90 (272)
-+.-.+...++ .+++.+...+|.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|++++...+.. ++++++
T Consensus 26 ~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~ 104 (233)
T PF01209_consen 26 LLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQ 104 (233)
T ss_dssp -----------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE
T ss_pred ccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEE
Confidence 33444444443 3555667788999999999999999999887 4579999999999999999999988775 899999
Q ss_pred cccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCC
Q 024096 91 CDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272)
Q Consensus 91 ~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272)
+|++++| ++++||+|++...+++++ ++...+++++|+|||||++++.++..|..
T Consensus 105 ~da~~lp~~d~sfD~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 105 GDAEDLPFPDNSFDAVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp -BTTB--S-TT-EEEEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred cCHHHhcCCCCceeEEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 9999999 789999999999999995 46889999999999999999999987765
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-20 Score=157.08 Aligned_cols=116 Identities=18% Similarity=0.232 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC
Q 024096 16 EVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR 94 (272)
Q Consensus 16 ~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~ 94 (272)
...+......+++.+...++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.+++. +++++++|+.
T Consensus 11 ~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~ 82 (255)
T PRK14103 11 ADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVR 82 (255)
T ss_pred HhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChh
Confidence 3444555678888888888999999999999999999987 678999999999999999753 5789999998
Q ss_pred CCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 95 QLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 95 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
+++++++||+|++..+++|++ ++..+++++.++|||||++++..+
T Consensus 83 ~~~~~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 83 DWKPKPDTDVVVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hCCCCCCceEEEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEcC
Confidence 876667999999999999995 558999999999999999998643
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=159.61 Aligned_cols=162 Identities=17% Similarity=0.199 Sum_probs=120.3
Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHH--cCCCCCeEEEEcccCCCC-CCCC
Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVRE--AGLQDHIRFYLCDYRQLP-KANK 101 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~--~g~~~~i~~~~~d~~~~~-~~~~ 101 (272)
++.+.+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++... ....++++++++|+.++| ++++
T Consensus 66 ~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~s 145 (261)
T PLN02233 66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCY 145 (261)
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCC
Confidence 45567778999999999999999999876 346999999999999999877542 222357999999999998 6789
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhc-ccC----------------
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEY-IFP---------------- 164 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-~~p---------------- 164 (272)
||+|++..+++|++ ++..+++++.++|||||++++.++..+...+... ...+.... +.|
T Consensus 146 fD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~y~~l~~ 221 (261)
T PLN02233 146 FDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTS--MQEWMIDNVVVPVATGYGLAKEYEYLKS 221 (261)
T ss_pred EeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHH--HHHHHHhhhhhHHHHHhCChHHHHHHHH
Confidence 99999999999994 5689999999999999999999887654321110 00000000 000
Q ss_pred -CCCCCCHHHHHHHhhcCCCcEEEEEEecC
Q 024096 165 -GGCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 165 -~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272)
-..+++.+++.+ +++++||++....+++
T Consensus 222 s~~~f~s~~el~~-ll~~aGF~~~~~~~~~ 250 (261)
T PLN02233 222 SINEYLTGEELEK-LALEAGFSSAKHYEIS 250 (261)
T ss_pred HHHhcCCHHHHHH-HHHHCCCCEEEEEEcC
Confidence 023567777764 5557999987776654
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=163.01 Aligned_cols=156 Identities=21% Similarity=0.389 Sum_probs=117.3
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272)
.++.+|||||||+|.++..+++. +++|+|+|+++.+++.|+++....+...++.++++|+++++ .+++||+|++.+++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 36779999999999999999874 88999999999999999988766555458999999999887 56799999999999
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCC----CCCCHHHHHHHhhcCCCcEEE
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGG----CLPSLGRVTSAMTSSSGLCVE 187 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~~l~~~~Gf~v~ 187 (272)
+|++ ++..+++++.++|||||.++++++......+........++..++.++. .+.+.+++.+ +++++||++.
T Consensus 209 eHv~--d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~-lL~~aGf~i~ 285 (322)
T PLN02396 209 EHVA--NPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSM-ILQRASVDVK 285 (322)
T ss_pred HhcC--CHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHH-HHHHcCCeEE
Confidence 9995 5689999999999999999998765322111000001112222222222 3567788875 4556999998
Q ss_pred EEEec
Q 024096 188 HLENI 192 (272)
Q Consensus 188 ~~~~~ 192 (272)
++.-+
T Consensus 286 ~~~G~ 290 (322)
T PLN02396 286 EMAGF 290 (322)
T ss_pred EEeee
Confidence 77544
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-21 Score=154.76 Aligned_cols=152 Identities=24% Similarity=0.434 Sum_probs=115.4
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272)
-+|.+|||+|||.|.++..+|+. |+.|+|+|+++..++.|+......|+ ++.+.+..++++. ..++||+|+|.+++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHH
Confidence 47899999999999999999997 89999999999999999999998886 4788999988888 44899999999999
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCC-----CCCHHHHHHHhhcCCCcEE
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGC-----LPSLGRVTSAMTSSSGLCV 186 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----~~~~~~~~~~l~~~~Gf~v 186 (272)
+|++ ++..+++.|.+++||||.++++++......+....-....+-. +.|.+. +...+++.+.+. ++++.+
T Consensus 135 EHv~--dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~-~vP~gTH~~~k~irp~El~~~~~-~~~~~~ 210 (243)
T COG2227 135 EHVP--DPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLR-IVPKGTHDYRKFIKPAELIRWLL-GANLKI 210 (243)
T ss_pred HccC--CHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHH-hcCCcchhHHHhcCHHHHHHhcc-cCCceE
Confidence 9995 5588999999999999999999887443322111111122222 223222 344566665444 477777
Q ss_pred EEEEe
Q 024096 187 EHLEN 191 (272)
Q Consensus 187 ~~~~~ 191 (272)
....-
T Consensus 211 ~~~~g 215 (243)
T COG2227 211 IDRKG 215 (243)
T ss_pred Eeecc
Confidence 65433
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-20 Score=154.65 Aligned_cols=136 Identities=22% Similarity=0.331 Sum_probs=111.9
Q ss_pred ccccccCCCCCCHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 024096 3 YSCAIFKSEHEDLEVGQ-MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAG 81 (272)
Q Consensus 3 y~~~~~~~~~~~l~~aq-~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g 81 (272)
|+-.+|.+....+..+- ...+..+++.+. .++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|+++....+
T Consensus 13 f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g 90 (255)
T PRK11036 13 FSRNIYGTTKGQIRQAILWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKG 90 (255)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC
Confidence 44555655554444442 223566777776 55679999999999999999996 7899999999999999999999888
Q ss_pred CCCCeEEEEcccCCCC--CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 82 LQDHIRFYLCDYRQLP--KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 82 ~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+.++++++++|+.+++ .+++||+|++..+++|+ .++..+++++.++|||||++++..+.
T Consensus 91 ~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~--~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 91 VSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWV--ADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred CccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhh--CCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 8778999999998875 45799999999999999 45689999999999999999986554
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=156.80 Aligned_cols=171 Identities=19% Similarity=0.213 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC
Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK 98 (272)
Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 98 (272)
...+.+.+...++..++.+|||||||+|.++..++......|+|+|+|+.++..++......+...++.++.+|+++++.
T Consensus 107 s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~ 186 (322)
T PRK15068 107 SDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA 186 (322)
T ss_pred HHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC
Confidence 33445666777776678999999999999999999874457999999999987665544433334579999999999887
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHh
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAM 178 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l 178 (272)
+++||+|++..+++|+ .++..+++++++.|+|||.+++.++...............+.. ......+|+..++...+
T Consensus 187 ~~~FD~V~s~~vl~H~--~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~--~~~~~~lps~~~l~~~L 262 (322)
T PRK15068 187 LKAFDTVFSMGVLYHR--RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAK--MRNVYFIPSVPALKNWL 262 (322)
T ss_pred cCCcCEEEECChhhcc--CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhc--CccceeCCCHHHHHHHH
Confidence 6789999999999999 5678999999999999999999876544322111100000000 00011357888887554
Q ss_pred hcCCCcEEEEEEecCc
Q 024096 179 TSSSGLCVEHLENIGI 194 (272)
Q Consensus 179 ~~~~Gf~v~~~~~~~~ 194 (272)
+++||.++++.+...
T Consensus 263 -~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 263 -ERAGFKDVRIVDVSV 277 (322)
T ss_pred -HHcCCceEEEEeCCC
Confidence 569999998887654
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-19 Score=153.55 Aligned_cols=174 Identities=17% Similarity=0.138 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC
Q 024096 16 EVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272)
Q Consensus 16 ~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272)
+-+..-++..++..+...++.+|||+|||+|.++..++......|+|+|+|+.++..++...+..+...++.+..+++.+
T Consensus 103 e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~ 182 (314)
T TIGR00452 103 EWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ 182 (314)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH
Confidence 33445556778888877788999999999999999988873347999999999987654433322223478899999998
Q ss_pred CCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHH
Q 024096 96 LPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVT 175 (272)
Q Consensus 96 ~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 175 (272)
++..++||+|++.++++|+ .++..++++++++|||||.+++.+................+. + ......+|+..++.
T Consensus 183 lp~~~~FD~V~s~gvL~H~--~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~-k-~~nv~flpS~~~L~ 258 (314)
T TIGR00452 183 LHELYAFDTVFSMGVLYHR--KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYA-K-MKNVYFIPSVSALK 258 (314)
T ss_pred CCCCCCcCEEEEcchhhcc--CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHH-h-ccccccCCCHHHHH
Confidence 8865689999999999999 566899999999999999999987654332211110000010 0 00112357888787
Q ss_pred HHhhcCCCcEEEEEEecCc
Q 024096 176 SAMTSSSGLCVEHLENIGI 194 (272)
Q Consensus 176 ~~l~~~~Gf~v~~~~~~~~ 194 (272)
.. ++++||+.+++.+...
T Consensus 259 ~~-L~~aGF~~V~i~~~~~ 276 (314)
T TIGR00452 259 NW-LEKVGFENFRILDVLK 276 (314)
T ss_pred HH-HHHCCCeEEEEEeccC
Confidence 54 4569999988877544
|
Known examples to date are restricted to the proteobacteria. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.6e-20 Score=134.53 Aligned_cols=107 Identities=30% Similarity=0.472 Sum_probs=93.3
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-CCCCCCCCccEEEEec-h
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY-RQLPKANKYDRIISCG-M 110 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~-~~~~~~~~fD~V~~~~-~ 110 (272)
|+.+|||+|||+|.++..+++. ++++++|+|+|+.+++.++++....+..++++++++|+ ......++||+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 5789999999999999999995 89999999999999999999997777778999999999 4444557899999999 5
Q ss_pred hhccCh-hhHHHHHHHHHhcCccCcEEEEEe
Q 024096 111 IEHVGH-DYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 111 ~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
++++.+ ++...+++++.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 554432 567889999999999999999864
|
... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-19 Score=143.71 Aligned_cols=151 Identities=16% Similarity=0.192 Sum_probs=116.4
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272)
..+++.+...++.+|||+|||+|..+..++++ +.+|+|+|+|+.+++.++++....++. ++++.+.|+.+.+.+++||
T Consensus 20 ~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD 97 (197)
T PRK11207 20 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFDGEYD 97 (197)
T ss_pred HHHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcCCCcC
Confidence 34566667777889999999999999999996 789999999999999999999888774 6899999998877557899
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCC
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSG 183 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~G 183 (272)
+|++..+++|+++++...+++++.++|+|||++++.....++.... .. -. ....+.+++.+ ..+ |
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~--~~--------~~--~~~~~~~el~~-~~~--~ 162 (197)
T PRK11207 98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC--TV--------GF--PFAFKEGELRR-YYE--G 162 (197)
T ss_pred EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC--CC--------CC--CCccCHHHHHH-HhC--C
Confidence 9999999999887788999999999999999976644433322110 00 00 12345666654 443 8
Q ss_pred cEEEEEEe
Q 024096 184 LCVEHLEN 191 (272)
Q Consensus 184 f~v~~~~~ 191 (272)
|.+.+..+
T Consensus 163 ~~~~~~~~ 170 (197)
T PRK11207 163 WEMVKYNE 170 (197)
T ss_pred CeEEEeeC
Confidence 98876644
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=151.19 Aligned_cols=164 Identities=17% Similarity=0.256 Sum_probs=124.4
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KAN 100 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~ 100 (272)
..+++.+.+.++.+|||+|||+|.++..+++. ++.+++|+|+++.+++.++++....++ +++.++++|+.+.+ +++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCC
Confidence 55777888889999999999999999999986 457999999999999999999887776 58999999998887 568
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcch--------hhhh----------cc
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPG--------FIKE----------YI 162 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~--------~~~~----------~~ 162 (272)
+||+|++..+++|+ ++...+++++.++|+|||++++.+...+.... +..... .... +.
T Consensus 114 ~fD~V~~~~~l~~~--~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (231)
T TIGR02752 114 SFDYVTIGFGLRNV--PDYMQVLREMYRVVKPGGKVVCLETSQPTIPG--FKQLYFFYFKYIMPLFGKLFAKSYKEYSWL 189 (231)
T ss_pred CccEEEEecccccC--CCHHHHHHHHHHHcCcCeEEEEEECCCCCChH--HHHHHHHHHcChhHHhhHHhcCCHHHHHHH
Confidence 99999999999998 45689999999999999999987765443211 100000 0000 00
Q ss_pred c-CCCCCCCHHHHHHHhhcCCCcEEEEEEecC
Q 024096 163 F-PGGCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 163 ~-p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272)
. ....+++.+++.+ +++++||.+.++..+.
T Consensus 190 ~~~~~~~~~~~~l~~-~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 190 QESTRDFPGMDELAE-MFQEAGFKDVEVKSYT 220 (231)
T ss_pred HHHHHHcCCHHHHHH-HHHHcCCCeeEEEEcc
Confidence 0 0123567777764 5557999988777654
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-18 Score=146.45 Aligned_cols=118 Identities=25% Similarity=0.340 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc
Q 024096 15 LEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93 (272)
Q Consensus 15 l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~ 93 (272)
+...|......+++.+.+.++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.++++. .++.++.+|+
T Consensus 12 ~~~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~ 85 (258)
T PRK01683 12 FEDERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADI 85 (258)
T ss_pred HHHHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECch
Confidence 44566667788899998889999999999999999999987 6789999999999999998763 3688999999
Q ss_pred CCCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 94 RQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 94 ~~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
.+..++++||+|+++.+++|++ +...+++++.++|||||.+++..
T Consensus 86 ~~~~~~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 86 ASWQPPQALDLIFANASLQWLP--DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hccCCCCCccEEEEccChhhCC--CHHHHHHHHHHhcCCCcEEEEEC
Confidence 8776667999999999999995 45899999999999999999863
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-17 Score=139.71 Aligned_cols=115 Identities=26% Similarity=0.376 Sum_probs=99.5
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KAN 100 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~ 100 (272)
+.+++.+.+.++.+|||+|||+|.++..+++. +.++++|+|+++.+++.++++.. ....++.+..+|+...+ .++
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~~~~~ 86 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLPFPDG 86 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCCCCCC
Confidence 55778888899999999999999999999987 35799999999999999988733 23357999999998877 567
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
.||+|++..+++|+ .++..+++++.++|||||.+++.++.
T Consensus 87 ~~D~v~~~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 87 SFDAVRSDRVLQHL--EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CceEEEEechhhcc--CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 89999999999999 45689999999999999999987654
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-20 Score=152.71 Aligned_cols=152 Identities=22% Similarity=0.403 Sum_probs=113.0
Q ss_pred CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC-----CeEEEEcccCCCCCCCCccEEEEec
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD-----HIRFYLCDYRQLPKANKYDRIISCG 109 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~-----~i~~~~~d~~~~~~~~~fD~V~~~~ 109 (272)
|++|||+|||.|.++..|++. ++.|+|+|+++.+++.|++........+ ++++.+.|++... +.||+|+|.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHH
Confidence 488999999999999999996 9999999999999999999955443322 3667777777765 5699999999
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCC----CCCHHHHHHHhhcCCCcE
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGC----LPSLGRVTSAMTSSSGLC 185 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~l~~~~Gf~ 185 (272)
+++|+ +++..+++.+.+.|||||.+++++....-..+..-.-....+.+.+..|.+ +++..++.+.+. +.++.
T Consensus 167 vleHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~-~~~~~ 243 (282)
T KOG1270|consen 167 VLEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILN-ANGAQ 243 (282)
T ss_pred HHHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHH-hcCcc
Confidence 99999 788999999999999999999987764432221111122333343333433 466777765444 57888
Q ss_pred EEEEEec
Q 024096 186 VEHLENI 192 (272)
Q Consensus 186 v~~~~~~ 192 (272)
+..+...
T Consensus 244 v~~v~G~ 250 (282)
T KOG1270|consen 244 VNDVVGE 250 (282)
T ss_pred hhhhhcc
Confidence 7765443
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-19 Score=142.11 Aligned_cols=127 Identities=20% Similarity=0.280 Sum_probs=108.3
Q ss_pred HHHHHHHH-HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cC------CEEEEEcCCHHHHHHHHHHHHHcCCCCC--
Q 024096 16 EVGQMRKV-SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TG------CKYTGITLSEEQLKYAEIKVREAGLQDH-- 85 (272)
Q Consensus 16 ~~aq~~~~-~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~------~~v~gvd~s~~~~~~a~~~~~~~g~~~~-- 85 (272)
...+++.+ +..+.++...++++|||++||+|.++..+.++ .. .+|+++|+||.|+..++++..+.++.++
T Consensus 81 SlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~ 160 (296)
T KOG1540|consen 81 SLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSR 160 (296)
T ss_pred hcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCc
Confidence 33344444 34567788888999999999999999999887 33 7999999999999999999988887655
Q ss_pred eEEEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCC
Q 024096 86 IRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272)
Q Consensus 86 i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272)
+.++++|++++| ++++||...+.+.+.+++ ++...+++++|+|||||++.+-++.--
T Consensus 161 ~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 161 VEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred eEEEeCCcccCCCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 899999999999 889999999999999995 458999999999999999998766643
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=139.34 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=113.8
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272)
..+++.+...++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.++++....++ ++.+...|+...+.+++||
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALNEDYD 96 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccccCCCC
Confidence 35556666666789999999999999999986 78999999999999999999888776 3788888887655456899
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCC
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSG 183 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~G 183 (272)
+|++..+++|++.++...+++++.++|||||++++.++...... .. -.|.....+.+++.+ +. .+
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~-~~-----------~~~~~~~~~~~el~~-~f--~~ 161 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADY-PC-----------HMPFSFTFKEDELRQ-YY--AD 161 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCC-CC-----------CCCcCccCCHHHHHH-Hh--CC
Confidence 99999999999877788999999999999999776544322110 00 001123456777764 44 35
Q ss_pred cEEEEEEe
Q 024096 184 LCVEHLEN 191 (272)
Q Consensus 184 f~v~~~~~ 191 (272)
|.+.....
T Consensus 162 ~~~~~~~e 169 (195)
T TIGR00477 162 WELLKYNE 169 (195)
T ss_pred CeEEEeec
Confidence 88877664
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.8e-18 Score=145.79 Aligned_cols=159 Identities=16% Similarity=0.282 Sum_probs=121.2
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272)
.+.+++.+++.++.+|||||||+|.++..++++ ++.+++++|. +.+++.+++++...++.++++++.+|+.+.+. ..
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-~~ 215 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-PE 215 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC-CC
Confidence 355677778888899999999999999999998 7889999997 88999999999999988899999999876543 23
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCC------CCCCHHHHH
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGG------CLPSLGRVT 175 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~~~~~~ 175 (272)
+|+|++..++|+++++....+++++++.|+|||++++.++..++...... ..+..+..+.+ ...+.+++.
T Consensus 216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~ 291 (306)
T TIGR02716 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNF----DYLSHYILGAGMPFSVLGFKEQARYK 291 (306)
T ss_pred CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchh----hHHHHHHHHcccccccccCCCHHHHH
Confidence 79999999999998776788999999999999999999886554322111 11112111111 123356665
Q ss_pred HHhhcCCCcEEEE
Q 024096 176 SAMTSSSGLCVEH 188 (272)
Q Consensus 176 ~~l~~~~Gf~v~~ 188 (272)
.+++++||+.+.
T Consensus 292 -~ll~~aGf~~v~ 303 (306)
T TIGR02716 292 -EILESLGYKDVT 303 (306)
T ss_pred -HHHHHcCCCeeE
Confidence 456679997654
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.9e-18 Score=142.53 Aligned_cols=111 Identities=16% Similarity=0.238 Sum_probs=98.6
Q ss_pred CCCCCEEEEECCCchHHHHHHHH--c-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEe
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVK--Q-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISC 108 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~--~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~ 108 (272)
+.++.+|||+|||+|..+..+++ . ++++++|+|+|+.+++.|++++...+...+++++++|+.+.+. ..+|+|++.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv~~ 132 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 132 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEehh
Confidence 35778999999999999988887 2 6789999999999999999999888777789999999988774 359999999
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
.+++|+++++...+++++++.|||||.+++.+...
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 99999987777899999999999999999987553
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-18 Score=133.80 Aligned_cols=107 Identities=35% Similarity=0.620 Sum_probs=95.7
Q ss_pred CCCCEEEEECCCchHHHHHHHH-c-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC--CCCccEEEEe
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVK-Q-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK--ANKYDRIISC 108 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~-~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~--~~~fD~V~~~ 108 (272)
+++.+|||+|||+|.++..+++ . ++.+++|+|+|+.+++.|+++++..+++ ++++.++|+.+++. .+.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEc
Confidence 4678999999999999999994 3 6789999999999999999999999986 89999999999763 3799999999
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
.+++|+ .+...+++++.+.|+++|.+++.++.
T Consensus 81 ~~l~~~--~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF--PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT--SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc--cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999 45689999999999999999997766
|
... |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=124.32 Aligned_cols=94 Identities=33% Similarity=0.538 Sum_probs=82.9
Q ss_pred EEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechhhccChh
Q 024096 39 LDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHD 117 (272)
Q Consensus 39 LDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~ 117 (272)
||+|||+|..+..+++.++.+++++|+++.+++.++++.... ++.+.++|+.+++ ++++||+|++..+++|+ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS--S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec--c
Confidence 899999999999999986789999999999999999986543 5679999999999 78999999999999999 6
Q ss_pred hHHHHHHHHHhcCccCcEEEE
Q 024096 118 YMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 118 ~~~~~l~~~~~~LkpgG~l~i 138 (272)
++..+++++.|+|||||++++
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 789999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.1e-18 Score=141.00 Aligned_cols=112 Identities=15% Similarity=0.176 Sum_probs=98.6
Q ss_pred CCCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEec
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCG 109 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~ 109 (272)
.++.+|||+|||+|..+..+++. ++++++|+|+|+.+++.|++++...+...+++++++|+.+++. ..+|+|++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-CCCCEEeeec
Confidence 57789999999999999999875 5789999999999999999998876655689999999998874 3589999999
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
+++|+++++...++++++++|+|||.+++.+.....
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~ 166 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE 166 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCC
Confidence 999998777889999999999999999998765433
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-18 Score=138.97 Aligned_cols=167 Identities=19% Similarity=0.293 Sum_probs=122.7
Q ss_pred HHHHHHHHHcC--CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC
Q 024096 21 RKVSVLIEKAR--VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK 98 (272)
Q Consensus 21 ~~~~~l~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 98 (272)
...+.+++.+. ..++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|++++...+..+++.+.++|+.+.+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-
Confidence 33455666665 567899999999999999999986 77999999999999999999987776568999999998876
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcc-----cCCCCCCCHHH
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYI-----FPGGCLPSLGR 173 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~-----~p~~~~~~~~~ 173 (272)
++||+|++..+++|++.++...+++++.+++++++.+.+.. ...... ....+...+ .+....++.++
T Consensus 118 -~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
T TIGR02021 118 -GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP---KTAWLA----FLKMIGELFPGSSRATSAYLHPMTD 189 (219)
T ss_pred -CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC---CchHHH----HHHHHHhhCcCcccccceEEecHHH
Confidence 78999999999999987778889999999988776555421 111100 011111111 11123356677
Q ss_pred HHHHhhcCCCcEEEEEEecCccHHH
Q 024096 174 VTSAMTSSSGLCVEHLENIGIHYYQ 198 (272)
Q Consensus 174 ~~~~l~~~~Gf~v~~~~~~~~~~~~ 198 (272)
+. .+++++||.+.........+..
T Consensus 190 ~~-~~l~~~Gf~v~~~~~~~~~~~~ 213 (219)
T TIGR02021 190 LE-RALGELGWKIVREGLVSTGFYN 213 (219)
T ss_pred HH-HHHHHcCceeeeeecccccchh
Confidence 76 4556799999988877665544
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.2e-18 Score=146.42 Aligned_cols=155 Identities=23% Similarity=0.202 Sum_probs=116.7
Q ss_pred HHHHHHcCC-CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC
Q 024096 24 SVLIEKARV-SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KAN 100 (272)
Q Consensus 24 ~~l~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~ 100 (272)
+.+++.+.+ .++.+|||+|||+|.++..+++. ++.+++++|+|+.+++.++++... .+++++.+|+.+++ +++
T Consensus 102 ~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~ 177 (340)
T PLN02490 102 DDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTD 177 (340)
T ss_pred HHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCC
Confidence 445565554 46789999999999999998887 567999999999999999987542 36889999999888 667
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhc
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 180 (272)
+||+|++..+++|+++ ....++++.++|||||++++.....+..... ..... .....++.+++.+ +++
T Consensus 178 sFDvVIs~~~L~~~~d--~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~------r~~~~---~~~~~~t~eEl~~-lL~ 245 (340)
T PLN02490 178 YADRYVSAGSIEYWPD--PQRGIKEAYRVLKIGGKACLIGPVHPTFWLS------RFFAD---VWMLFPKEEEYIE-WFT 245 (340)
T ss_pred ceeEEEEcChhhhCCC--HHHHHHHHHHhcCCCcEEEEEEecCcchhHH------HHhhh---hhccCCCHHHHHH-HHH
Confidence 8999999999999954 4789999999999999998865443321100 00000 0112457777875 455
Q ss_pred CCCcEEEEEEecCc
Q 024096 181 SSGLCVEHLENIGI 194 (272)
Q Consensus 181 ~~Gf~v~~~~~~~~ 194 (272)
++||+.+++++++.
T Consensus 246 ~aGF~~V~i~~i~~ 259 (340)
T PLN02490 246 KAGFKDVKLKRIGP 259 (340)
T ss_pred HCCCeEEEEEEcCh
Confidence 69999998887654
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=142.74 Aligned_cols=155 Identities=23% Similarity=0.250 Sum_probs=116.4
Q ss_pred cCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEE
Q 024096 30 ARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRII 106 (272)
Q Consensus 30 l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~ 106 (272)
..+.++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++....++. ++.++.+|+++++ ++++||+|+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEE
Confidence 45678999999999999988877765 3458999999999999999999888874 8999999999888 567999999
Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEE
Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCV 186 (272)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v 186 (272)
++.+++|.+ +...+++++.++|||||++++.++............ ....+....+...+..++.+ +++++||..
T Consensus 152 ~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~e~~~-~l~~aGf~~ 225 (272)
T PRK11873 152 SNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRN---DAELYAGCVAGALQEEEYLA-MLAEAGFVD 225 (272)
T ss_pred EcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHH---hHHHHhccccCCCCHHHHHH-HHHHCCCCc
Confidence 999999885 447899999999999999999887654432211111 11111111122346667764 455699988
Q ss_pred EEEEe
Q 024096 187 EHLEN 191 (272)
Q Consensus 187 ~~~~~ 191 (272)
..+..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 76654
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=139.37 Aligned_cols=168 Identities=17% Similarity=0.158 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC
Q 024096 16 EVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272)
Q Consensus 16 ~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272)
...|....+.+++.+...++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. ...++++|++.
T Consensus 24 ~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~ 96 (251)
T PRK10258 24 AELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCccc
Confidence 4567777788888888767789999999999999998875 7899999999999999987632 35788999998
Q ss_pred CC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHH
Q 024096 96 LP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRV 174 (272)
Q Consensus 96 ~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 174 (272)
++ ++++||+|+++.+++++ .++..+++++.++|+|||.++++.+..... .+.......+.. ......+++.+++
T Consensus 97 ~~~~~~~fD~V~s~~~l~~~--~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~--~el~~~~~~~~~-~~~~~~~~~~~~l 171 (251)
T PRK10258 97 LPLATATFDLAWSNLAVQWC--GNLSTALRELYRVVRPGGVVAFTTLVQGSL--PELHQAWQAVDE-RPHANRFLPPDAI 171 (251)
T ss_pred CcCCCCcEEEEEECchhhhc--CCHHHHHHHHHHHcCCCeEEEEEeCCCCch--HHHHHHHHHhcc-CCccccCCCHHHH
Confidence 88 66789999999999998 466899999999999999999976653221 111110000000 1112345677777
Q ss_pred HHHhhcCCCcEEEEEEecCccHH
Q 024096 175 TSAMTSSSGLCVEHLENIGIHYY 197 (272)
Q Consensus 175 ~~~l~~~~Gf~v~~~~~~~~~~~ 197 (272)
...+ ...++.. ..+.+...|.
T Consensus 172 ~~~l-~~~~~~~-~~~~~~~~f~ 192 (251)
T PRK10258 172 EQAL-NGWRYQH-HIQPITLWFD 192 (251)
T ss_pred HHHH-HhCCcee-eeeEEEEECC
Confidence 7554 4577754 3444444443
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-18 Score=135.22 Aligned_cols=140 Identities=24% Similarity=0.369 Sum_probs=99.6
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEech
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGM 110 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~ 110 (272)
..++.+|||+|||.|.++..+++. +.+++|+|+++.+++. .++.....+....+ ++++||+|++..+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 578899999999999999999776 6799999999999888 13344444333333 5689999999999
Q ss_pred hhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEE
Q 024096 111 IEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEH 188 (272)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~ 188 (272)
++|++ ++..+++++.++|||||+++++++............. .....+ .....+.+.+++. .+++++||++++
T Consensus 88 l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~-~ll~~~G~~iv~ 160 (161)
T PF13489_consen 88 LEHLP--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKW-RYDRPY-GGHVHFFSPDELR-QLLEQAGFEIVE 160 (161)
T ss_dssp GGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHC-CGTCHH-TTTTEEBBHHHHH-HHHHHTTEEEEE
T ss_pred Hhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhc-CCcCcc-CceeccCCHHHHH-HHHHHCCCEEEE
Confidence 99995 6799999999999999999998877532110000000 000000 0123445777776 566679999875
|
... |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-17 Score=129.59 Aligned_cols=101 Identities=21% Similarity=0.330 Sum_probs=89.2
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEech
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGM 110 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~ 110 (272)
++++.+|||+|||+|..+..+++. ++++|+++|+++.+++.++++++.++++ +++++++|+.+++..++||+|++..
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~~- 120 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSRA- 120 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEcc-
Confidence 445899999999999999999876 7889999999999999999999999985 5999999998877666899999964
Q ss_pred hhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 111 IEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+ .++..+++.+.+.|||||++++.
T Consensus 121 ---~--~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 121 ---V--ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred ---c--cCHHHHHHHHHHhcCCCeEEEEE
Confidence 2 34578999999999999999985
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-17 Score=136.27 Aligned_cols=166 Identities=23% Similarity=0.326 Sum_probs=123.3
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KAN 100 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~ 100 (272)
..++..+...++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++...++..++.++.+|+.+.+ ..+
T Consensus 41 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 41 RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 455666666778999999999999999999873 48999999999999999999877666668999999998877 457
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhc-------ccCC--------
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEY-------IFPG-------- 165 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-------~~p~-------- 165 (272)
.||+|++..+++++ .+...+++++.++|+|||.+++.+...+.... ......+.... .+.+
T Consensus 121 ~~D~I~~~~~l~~~--~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T PRK00216 121 SFDAVTIAFGLRNV--PDIDKALREMYRVLKPGGRLVILEFSKPTNPP--LKKAYDFYLFKVLPLIGKLISKNAEAYSYL 196 (239)
T ss_pred CccEEEEecccccC--CCHHHHHHHHHHhccCCcEEEEEEecCCCchH--HHHHHHHHHHhhhHHHHHHHcCCcHHHHHH
Confidence 89999999999998 45689999999999999999988776544321 10000000000 0000
Q ss_pred ----CCCCCHHHHHHHhhcCCCcEEEEEEecCc
Q 024096 166 ----GCLPSLGRVTSAMTSSSGLCVEHLENIGI 194 (272)
Q Consensus 166 ----~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~ 194 (272)
..+++.+++.+ +++++||.+..+..+..
T Consensus 197 ~~~~~~~~~~~~~~~-~l~~aGf~~~~~~~~~~ 228 (239)
T PRK00216 197 AESIRAFPDQEELAA-MLEEAGFERVRYRNLTG 228 (239)
T ss_pred HHHHHhCCCHHHHHH-HHHhCCCceeeeeeeec
Confidence 12356666664 55579999888877543
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=137.46 Aligned_cols=148 Identities=16% Similarity=0.230 Sum_probs=112.4
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRI 105 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V 105 (272)
++..+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++...++ ++++...|+...+.+++||+|
T Consensus 112 ~~~~~~~~~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I 188 (287)
T PRK12335 112 VLEAVQTVKPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFI 188 (287)
T ss_pred HHHHhhccCCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEE
Confidence 334444344569999999999999999986 78999999999999999999988876 688899998776556889999
Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcE
Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLC 185 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~ 185 (272)
++..+++|++.++...+++++.++|+|||++++........... -.|.....+.+++.+ .. .+|+
T Consensus 189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~------------~~p~~~~~~~~el~~-~~--~~~~ 253 (287)
T PRK12335 189 LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPC------------PMPFSFTFKEGELKD-YY--QDWE 253 (287)
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCC------------CCCCCcccCHHHHHH-Hh--CCCE
Confidence 99999999987788999999999999999977644332221100 012223456666664 34 3588
Q ss_pred EEEEEe
Q 024096 186 VEHLEN 191 (272)
Q Consensus 186 v~~~~~ 191 (272)
+.....
T Consensus 254 i~~~~e 259 (287)
T PRK12335 254 IVKYNE 259 (287)
T ss_pred EEEEec
Confidence 887643
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.9e-17 Score=128.96 Aligned_cols=117 Identities=22% Similarity=0.325 Sum_probs=98.3
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272)
..+++.++..++.++||+|||.|..+.+||++ |..|+++|.|+..++.+++.+...+++ ++..+.|+.+...++.||
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcC
Confidence 45666777667789999999999999999997 999999999999999999998888874 999999998887668899
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
+|++..+++|+..+..+.+++++...++|||++++.....
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~ 136 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFME 136 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence 9999999999998888999999999999999999866653
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=132.82 Aligned_cols=166 Identities=19% Similarity=0.261 Sum_probs=112.5
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272)
..++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++....+..+++.+..+|+.. .+++||+|++..++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l 137 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchh
Confidence 467789999999999999999986 678999999999999999998887765689999999543 34789999999999
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhc-ccCCCCCCCHHHHHHHhhcCCCcEEEEEE
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEY-IFPGGCLPSLGRVTSAMTSSSGLCVEHLE 190 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~ 190 (272)
+|++++....+++++.+.+++++.+.+. .. .............+... ..+.....+..++.. +++++||.+....
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~i~~~--~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~Gf~~~~~~ 213 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLIFTFA--PY-TPLLALLHWIGGLFPGPSRTTRIYPHREKGIRR-ALAAAGFKVVRTE 213 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeEEEEEC--Cc-cHHHHHHHHhccccCCccCCCCccccCHHHHHH-HHHHCCCceEeee
Confidence 9998888889999999877544433321 11 00000000000011000 011123345666664 5557999998887
Q ss_pred ecCc-cHHHHHHHHH
Q 024096 191 NIGI-HYYQTLRCWR 204 (272)
Q Consensus 191 ~~~~-~~~~~~~~~~ 204 (272)
.... .|...+..|.
T Consensus 214 ~~~~~~~~~~~~~~~ 228 (230)
T PRK07580 214 RISSGFYFSRLLEAV 228 (230)
T ss_pred eccchhHHHHHHHHh
Confidence 7553 3444444443
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=132.64 Aligned_cols=165 Identities=18% Similarity=0.186 Sum_probs=118.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272)
+++.+...+..-.|.+|||||||.|..+..++.+....|+|+|+++......+....-.|....+......+++++..+.
T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 44566666655578999999999999999999984457999999988766654444444443344555456778776689
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccC--cchhhhhcccCCCCCCCHHHHHHHhh
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRL--SPGFIKEYIFPGGCLPSLGRVTSAMT 179 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~l~ 179 (272)
||+|+|.+++.|. .++-..++++++.|+|||.+++.+...+.+....+.. ...-++.- -.+|+...+...+
T Consensus 183 FDtVF~MGVLYHr--r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv----~FiPs~~~L~~wl- 255 (315)
T PF08003_consen 183 FDTVFSMGVLYHR--RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNV----WFIPSVAALKNWL- 255 (315)
T ss_pred cCEEEEeeehhcc--CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCce----EEeCCHHHHHHHH-
Confidence 9999999999999 6779999999999999999999888765543222211 11112221 1368888887544
Q ss_pred cCCCcEEEEEEecC
Q 024096 180 SSSGLCVEHLENIG 193 (272)
Q Consensus 180 ~~~Gf~v~~~~~~~ 193 (272)
+.+||.-+++-+..
T Consensus 256 ~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 256 ERAGFKDVRCVDVS 269 (315)
T ss_pred HHcCCceEEEecCc
Confidence 46999877776654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.9e-17 Score=127.58 Aligned_cols=165 Identities=19% Similarity=0.246 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC
Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL 96 (272)
Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 96 (272)
...+-...++.++++.+..+|.|+|||+|+.+..|+++ +++.++|+|.|+.|++.|+++. .+++|..+|+.+.
T Consensus 14 eRtRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w 87 (257)
T COG4106 14 ERTRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTW 87 (257)
T ss_pred hccCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhc
Confidence 33444567889999999999999999999999999999 9999999999999999998763 4789999999999
Q ss_pred CCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccc----cCcchhhhhcc---cCCCCCC
Q 024096 97 PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEY----RLSPGFIKEYI---FPGGCLP 169 (272)
Q Consensus 97 ~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~----~~~~~~~~~~~---~p~~~~~ 169 (272)
.++...|+++++.+++++++. ..++.++...|.|||.+.++-+..-+...... .+...|-...- .....++
T Consensus 88 ~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~ 165 (257)
T COG4106 88 KPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLP 165 (257)
T ss_pred CCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCC
Confidence 988999999999999999765 89999999999999999996544322211111 11111211111 1235678
Q ss_pred CHHHHHHHhhcCCCcEEEEEEe
Q 024096 170 SLGRVTSAMTSSSGLCVEHLEN 191 (272)
Q Consensus 170 ~~~~~~~~l~~~~Gf~v~~~~~ 191 (272)
+...+.+.+.. .+-+|.-++.
T Consensus 166 s~a~Yy~lLa~-~~~rvDiW~T 186 (257)
T COG4106 166 SPAAYYELLAP-LACRVDIWHT 186 (257)
T ss_pred CHHHHHHHhCc-ccceeeeeee
Confidence 88888866553 4556544443
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-16 Score=118.63 Aligned_cols=114 Identities=23% Similarity=0.288 Sum_probs=95.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272)
.....+++.+.+.++.+|||+|||+|..+..+++. ++.+++++|+++.+++.+++++...+.+ +++++.+|+....
T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (124)
T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALED 84 (124)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChh
Confidence 33456778888888899999999999999999988 6689999999999999999999888764 6899999977533
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
..++||.|++.....+ ...+++++.+.|+|||++++..
T Consensus 85 ~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 85 SLPEPDRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hcCCCCEEEECCcchh-----HHHHHHHHHHHcCCCCEEEEEe
Confidence 3468999999765443 3689999999999999999853
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-16 Score=125.92 Aligned_cols=99 Identities=19% Similarity=0.304 Sum_probs=86.2
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhh
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIE 112 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~ 112 (272)
++.+|||+|||+|.++..++.. ++.+|+++|+|+.+++.+++++++.++. +++++++|+.+++..++||+|++.. ++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQHEEQFDVITSRA-LA 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccccCCccEEEehh-hh
Confidence 4789999999999999998876 5679999999999999999999988874 6999999999876567999999865 43
Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+ ...+++.+.++|+|||++++.
T Consensus 120 ~-----~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 120 S-----LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred C-----HHHHHHHHHHhcCCCCEEEEE
Confidence 3 367888999999999999974
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-16 Score=129.03 Aligned_cols=119 Identities=32% Similarity=0.415 Sum_probs=100.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-K 98 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~ 98 (272)
....+++.+...++.+|||+|||+|..+..+++. +. .+++++|+++.+++.++++.. ...++++..+|+.+.+ +
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~ 103 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFE 103 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCC
Confidence 3455666776678899999999999999999987 33 699999999999999998865 2357899999998887 5
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
+++||+|++..+++|+ .++..+++++.+.|+|||++++.+...+.
T Consensus 104 ~~~~D~i~~~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 148 (223)
T TIGR01934 104 DNSFDAVTIAFGLRNV--TDIQKALREMYRVLKPGGRLVILEFSKPA 148 (223)
T ss_pred CCcEEEEEEeeeeCCc--ccHHHHHHHHHHHcCCCcEEEEEEecCCC
Confidence 5789999999999998 45689999999999999999997776443
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-15 Score=124.14 Aligned_cols=152 Identities=15% Similarity=0.102 Sum_probs=110.6
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-----------CCCCCeEEEEcc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA-----------GLQDHIRFYLCD 92 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~-----------g~~~~i~~~~~d 92 (272)
...++.+...++.+|||+|||.|..+.+||++ |.+|+|+|+|+..++.+....... .-..+++++++|
T Consensus 24 ~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D 102 (213)
T TIGR03840 24 VKHWPALGLPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGD 102 (213)
T ss_pred HHHHHhhCCCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEcc
Confidence 33445554457789999999999999999997 999999999999999864321100 001368999999
Q ss_pred cCCCCC--CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCC
Q 024096 93 YRQLPK--ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPS 170 (272)
Q Consensus 93 ~~~~~~--~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 170 (272)
+.+++. .+.||.|+-..+++|++.+....+++.+.++|||||++++..+..+..... -| -+..+
T Consensus 103 ~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-------------gp-p~~~~ 168 (213)
T TIGR03840 103 FFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-------------GP-PFSVS 168 (213)
T ss_pred CCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-------------Cc-CCCCC
Confidence 998873 467999999999999998888999999999999999988766654321100 01 12346
Q ss_pred HHHHHHHhhcCCCcEEEEEEec
Q 024096 171 LGRVTSAMTSSSGLCVEHLENI 192 (272)
Q Consensus 171 ~~~~~~~l~~~~Gf~v~~~~~~ 192 (272)
.+++.+ +.. .+|.+..++..
T Consensus 169 ~~eL~~-~f~-~~~~i~~~~~~ 188 (213)
T TIGR03840 169 PAEVEA-LYG-GHYEIELLESR 188 (213)
T ss_pred HHHHHH-Hhc-CCceEEEEeec
Confidence 666664 443 46777766653
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5e-17 Score=127.42 Aligned_cols=112 Identities=20% Similarity=0.195 Sum_probs=96.4
Q ss_pred HcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE-EEEcccCCCC--CCCCccEE
Q 024096 29 KARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIR-FYLCDYRQLP--KANKYDRI 105 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~-~~~~d~~~~~--~~~~fD~V 105 (272)
.+.......|||+|||+|..-.+.-..++++||++|+++.|.+.+.+.++++.. .++. |++++.++++ ++.++|+|
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtV 149 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTV 149 (252)
T ss_pred HhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeE
Confidence 333333456899999999988877766889999999999999999999988744 4666 9999999999 88999999
Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
++..++... +++.+.++++.++|||||++++.+-+.
T Consensus 150 V~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 150 VCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred EEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 999999988 778999999999999999999976653
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-16 Score=130.31 Aligned_cols=184 Identities=23% Similarity=0.396 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc
Q 024096 14 DLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93 (272)
Q Consensus 14 ~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~ 93 (272)
.+.++....+..+...+...++.+|||+|||+|.++..+++. +++++++|+++.+++.++++....+. .+.+...|+
T Consensus 28 ~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~ 104 (233)
T PRK05134 28 PLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL--KIDYRQTTA 104 (233)
T ss_pred HHHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCH
Confidence 344444455666777766668899999999999999999886 78999999999999999998876654 578888888
Q ss_pred CCCC--CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcc----cCCCC
Q 024096 94 RQLP--KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYI----FPGGC 167 (272)
Q Consensus 94 ~~~~--~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~ 167 (272)
.+.+ .+++||+|++..+++|++ +...+++++.++|+|||.+++..+......+.........+.... .....
T Consensus 105 ~~~~~~~~~~fD~Ii~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (233)
T PRK05134 105 EELAAEHPGQFDVVTCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKK 182 (233)
T ss_pred HHhhhhcCCCccEEEEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhh
Confidence 8775 457999999999999995 457899999999999999998755321110000000000011100 11133
Q ss_pred CCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHH
Q 024096 168 LPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRK 205 (272)
Q Consensus 168 ~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~ 205 (272)
+.+..++.. +++.+||.++... +.+|.+....|..
T Consensus 183 ~~~~~~~~~-~l~~~Gf~~v~~~--~~~~~~~~~~~~~ 217 (233)
T PRK05134 183 FIKPSELAA-WLRQAGLEVQDIT--GLHYNPLTNRWKL 217 (233)
T ss_pred cCCHHHHHH-HHHHCCCeEeeee--eEEechhhcceee
Confidence 556777764 4556999998765 3456566677765
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.2e-16 Score=122.48 Aligned_cols=129 Identities=25% Similarity=0.438 Sum_probs=102.5
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 024096 4 SCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGL 82 (272)
Q Consensus 4 ~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~ 82 (272)
..++|.. ..++.+..-.++.+... ++.+|||+|||+|.++..+++. +..+|+++|+++.+++.+++++..+++
T Consensus 7 ~~gvFs~--~~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~ 80 (170)
T PF05175_consen 7 HPGVFSP--PRLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL 80 (170)
T ss_dssp ETTSTTT--TSHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC
T ss_pred CCCeeCC--CCCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 3567742 24566666555555555 6779999999999999999998 666899999999999999999999998
Q ss_pred CCCeEEEEcccCCCCCCCCccEEEEechhhccCh---hhHHHHHHHHHhcCccCcEEEEE
Q 024096 83 QDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGH---DYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 83 ~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+ ++++..|..+..++++||+|+++..++.-.+ .....+++++.+.|+|||.+++.
T Consensus 81 ~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 81 EN-VEVVQSDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp TT-EEEEESSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cc-cccccccccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 65 9999999877656789999999988665432 24578999999999999999873
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-17 Score=118.05 Aligned_cols=95 Identities=28% Similarity=0.585 Sum_probs=82.4
Q ss_pred EEEECCCchHHHHHHHHcc----CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEec-hh
Q 024096 38 VLDIGCGWGTLAIEIVKQT----GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCG-MI 111 (272)
Q Consensus 38 vLDiG~G~G~~~~~l~~~~----~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~-~~ 111 (272)
|||+|||+|..+..+++.. ..+++|+|+|+.+++.++++....+. +++++++|+.+++ ..++||+|++.. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999999863 37999999999999999999887665 7899999999988 667999999954 59
Q ss_pred hccChhhHHHHHHHHHhcCccCc
Q 024096 112 EHVGHDYMEEFFGCCESLLATHG 134 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG 134 (272)
+|+++++...+++++.++|||||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999998
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.9e-16 Score=123.57 Aligned_cols=111 Identities=22% Similarity=0.305 Sum_probs=92.9
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKY 102 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~f 102 (272)
..+++.+.+.++.+|||+|||+|.++..+++. ++.+++++|+++.+++.+++++...++. +++++++|... +..++|
T Consensus 21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~~~~ 98 (187)
T PRK08287 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELPGKA 98 (187)
T ss_pred HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcCcCC
Confidence 34567778888999999999999999999987 6689999999999999999999888774 79999998743 234689
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
|+|++.....++ ..+++++.+.|+|||++++...
T Consensus 99 D~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 99 DAIFIGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred CEEEECCCccCH-----HHHHHHHHHhcCCCeEEEEEEe
Confidence 999997655443 6789999999999999988543
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-16 Score=126.76 Aligned_cols=121 Identities=14% Similarity=0.229 Sum_probs=97.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 024096 13 EDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC 91 (272)
Q Consensus 13 ~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~ 91 (272)
+.+..+....+...+..+ .++.+|||+|||+|..+..+++. ++.+++|+|+|+.+++.|+++. .++.+.++
T Consensus 24 ~~~~~~~~~~~~~~l~~~--~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~ 95 (204)
T TIGR03587 24 QSLVAAKLAMFARALNRL--PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQG 95 (204)
T ss_pred HHHHHHHHHHHHHHHHhc--CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEe
Confidence 344445455555555543 46779999999999999999887 6789999999999999998763 25778899
Q ss_pred ccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCC
Q 024096 92 DYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272)
Q Consensus 92 d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272)
|+.+ + ++++||+|++..+++|+++++...+++++.+++ ++++++.++..+
T Consensus 96 d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 96 SLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred eccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 9887 5 678999999999999998778899999999987 568888776543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=133.45 Aligned_cols=134 Identities=17% Similarity=0.258 Sum_probs=105.4
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchH----HHHHHHHc-c-----CCEEEEEcCCHHHHHHHHH
Q 024096 6 AIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGT----LAIEIVKQ-T-----GCKYTGITLSEEQLKYAEI 75 (272)
Q Consensus 6 ~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~----~~~~l~~~-~-----~~~v~gvd~s~~~~~~a~~ 75 (272)
.+|..+...++......+..+++.....++.+|||+|||+|. ++..+++. + +.+|+|+|+|+.+++.|++
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 455566666777666666666665555567899999999996 56666654 2 4689999999999999997
Q ss_pred HHH----HcC----------------------CCCCeEEEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHh
Q 024096 76 KVR----EAG----------------------LQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCES 128 (272)
Q Consensus 76 ~~~----~~g----------------------~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~ 128 (272)
.+- ..+ +..++.|.++|+.+.+ +.++||+|+|.++++|+++++...+++++++
T Consensus 151 ~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~ 230 (264)
T smart00138 151 GIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAE 230 (264)
T ss_pred CCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHH
Confidence 531 011 1247899999999887 4789999999999999988788899999999
Q ss_pred cCccCcEEEEE
Q 024096 129 LLATHGLLVLQ 139 (272)
Q Consensus 129 ~LkpgG~l~i~ 139 (272)
.|+|||++++.
T Consensus 231 ~L~pGG~L~lg 241 (264)
T smart00138 231 ALKPGGYLFLG 241 (264)
T ss_pred HhCCCeEEEEE
Confidence 99999999984
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-16 Score=126.99 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=95.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
.....+++.+...++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.+++++...++.++++++++|..+..
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 345678888888899999999999999999998862 46999999999999999999998887667999999987754
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
...+||+|++..++++++ +++.+.|+|||++++.
T Consensus 139 ~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred cCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 457899999998887763 3577889999999874
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-16 Score=129.00 Aligned_cols=157 Identities=21% Similarity=0.279 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHcCC---CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 024096 16 EVGQMRKVSVLIEKARV---SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC 91 (272)
Q Consensus 16 ~~aq~~~~~~l~~~l~~---~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~ 91 (272)
...|......+++.+.. ..+.+|||+|||+|.++..+++. +..+++++|+++.++..++++.. +++.++.+
T Consensus 13 ~~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~ 87 (240)
T TIGR02072 13 AKIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICG 87 (240)
T ss_pred HHHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEec
Confidence 44566666666666553 34579999999999999999988 66789999999999998887643 37899999
Q ss_pred ccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCC
Q 024096 92 DYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPS 170 (272)
Q Consensus 92 d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 170 (272)
|+.+.+ ++++||+|++..+++|. .++..+++++.++|+|||.+++..+...... ........ ....+++
T Consensus 88 d~~~~~~~~~~fD~vi~~~~l~~~--~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~-----~~~~~~~~---~~~~~~~ 157 (240)
T TIGR02072 88 DAEKLPLEDSSFDLIVSNLALQWC--DDLSQALSELARVLKPGGLLAFSTFGPGTLH-----ELRQSFGQ---HGLRYLS 157 (240)
T ss_pred chhhCCCCCCceeEEEEhhhhhhc--cCHHHHHHHHHHHcCCCcEEEEEeCCccCHH-----HHHHHHHH---hccCCCC
Confidence 999888 66889999999999999 4568999999999999999999765432210 00111111 2234567
Q ss_pred HHHHHHHhhcCCCcEEEEE
Q 024096 171 LGRVTSAMTSSSGLCVEHL 189 (272)
Q Consensus 171 ~~~~~~~l~~~~Gf~v~~~ 189 (272)
.+++...+. ++ |....+
T Consensus 158 ~~~~~~~l~-~~-f~~~~~ 174 (240)
T TIGR02072 158 LDELKALLK-NS-FELLTL 174 (240)
T ss_pred HHHHHHHHH-Hh-cCCcEE
Confidence 777765444 34 765443
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=131.76 Aligned_cols=160 Identities=26% Similarity=0.353 Sum_probs=107.8
Q ss_pred HHHHHHHcCC---CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEEEcccCC
Q 024096 23 VSVLIEKARV---SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL----QDHIRFYLCDYRQ 95 (272)
Q Consensus 23 ~~~l~~~l~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~----~~~i~~~~~d~~~ 95 (272)
++.+++.+.. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+. ..++.+...|+.+
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 3445555432 35789999999999999999986 78999999999999999999876421 1367888999876
Q ss_pred CCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCC------CCCC
Q 024096 96 LPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPG------GCLP 169 (272)
Q Consensus 96 ~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~~ 169 (272)
+ +++||+|++..+++|++++....+++.+.+. .++|. +++.. +...... ....+.. .+++ ..+.
T Consensus 209 l--~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~~--p~~~~~~---~l~~~g~-~~~g~~~~~r~y~~ 278 (315)
T PLN02585 209 L--SGKYDTVTCLDVLIHYPQDKADGMIAHLASL-AEKRL-IISFA--PKTLYYD---ILKRIGE-LFPGPSKATRAYLH 278 (315)
T ss_pred c--CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh-cCCEE-EEEeC--CcchHHH---HHHHHHh-hcCCCCcCceeeeC
Confidence 5 3789999999999999876666778877754 55544 44321 2211100 0011111 1211 1234
Q ss_pred CHHHHHHHhhcCCCcEEEEEEecCc
Q 024096 170 SLGRVTSAMTSSSGLCVEHLENIGI 194 (272)
Q Consensus 170 ~~~~~~~~l~~~~Gf~v~~~~~~~~ 194 (272)
+.+++. .+++++||++...+....
T Consensus 279 s~eel~-~lL~~AGf~v~~~~~~~~ 302 (315)
T PLN02585 279 AEADVE-RALKKAGWKVARREMTAT 302 (315)
T ss_pred CHHHHH-HHHHHCCCEEEEEEEeec
Confidence 566666 566679999987665543
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-15 Score=119.33 Aligned_cols=138 Identities=19% Similarity=0.197 Sum_probs=105.4
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRI 105 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V 105 (272)
+.+.+...++.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++..++. +++++.+|+.+.. .++||+|
T Consensus 11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~fD~V 86 (179)
T TIGR00537 11 LEANLRELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-RGKFDVI 86 (179)
T ss_pred HHHHHHhcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-CCcccEE
Confidence 334444556679999999999999999987 44999999999999999999987765 6889999987654 3589999
Q ss_pred EEechhhccChh-------------------hHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCC
Q 024096 106 ISCGMIEHVGHD-------------------YMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGG 166 (272)
Q Consensus 106 ~~~~~~~~~~~~-------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 166 (272)
+++..+++.++. ....+++++.++|+|||.+++......
T Consensus 87 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---------------------- 144 (179)
T TIGR00537 87 LFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN---------------------- 144 (179)
T ss_pred EECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------------------
Confidence 999887766421 145789999999999999998654311
Q ss_pred CCCCHHHHHHHhhcCCCcEEEEEEecC
Q 024096 167 CLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 167 ~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272)
...++...+ ++.||.+..+...+
T Consensus 145 ---~~~~~~~~l-~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 145 ---GEPDTFDKL-DERGFRYEIVAERG 167 (179)
T ss_pred ---ChHHHHHHH-HhCCCeEEEEEEee
Confidence 133344333 45899888776654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.7e-15 Score=120.09 Aligned_cols=149 Identities=20% Similarity=0.206 Sum_probs=110.2
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--------------CCCeEEE
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL--------------QDHIRFY 89 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~--------------~~~i~~~ 89 (272)
...++.+...++.+|||+|||.|..+.+||++ |.+|+|+|+|+..++.+.. ++++ ..++++.
T Consensus 27 ~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~ 102 (218)
T PRK13255 27 QKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIY 102 (218)
T ss_pred HHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEE
Confidence 34444455567789999999999999999996 9999999999999998643 2222 2478999
Q ss_pred EcccCCCCC--CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCC
Q 024096 90 LCDYRQLPK--ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGC 167 (272)
Q Consensus 90 ~~d~~~~~~--~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 167 (272)
++|+.++++ ...||.|+-..+++|++.+....+++.+.++|+|||.+++.....+..... . .| .
T Consensus 103 ~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~----------g--Pp--~ 168 (218)
T PRK13255 103 CGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA----------G--PP--F 168 (218)
T ss_pred ECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC----------C--CC--C
Confidence 999998862 368999999999999998888999999999999999866644443322110 0 01 2
Q ss_pred CCCHHHHHHHhhcCCCcEEEEEEec
Q 024096 168 LPSLGRVTSAMTSSSGLCVEHLENI 192 (272)
Q Consensus 168 ~~~~~~~~~~l~~~~Gf~v~~~~~~ 192 (272)
..+.+++.+ +.. .+|++..++..
T Consensus 169 ~~~~~el~~-~~~-~~~~i~~~~~~ 191 (218)
T PRK13255 169 SVSDEEVEA-LYA-GCFEIELLERQ 191 (218)
T ss_pred CCCHHHHHH-Hhc-CCceEEEeeec
Confidence 346677764 443 44888777654
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.2e-18 Score=121.54 Aligned_cols=95 Identities=26% Similarity=0.486 Sum_probs=65.5
Q ss_pred EEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEechhhcc
Q 024096 39 LDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCGMIEHV 114 (272)
Q Consensus 39 LDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~~~~~~ 114 (272)
||+|||+|.++..+.+. +..+++|+|+|+.+++.+++++...+.. +......+..+.. ..++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999999988 7889999999999999999988887542 3344444433332 33699999999999999
Q ss_pred ChhhHHHHHHHHHhcCccCcEE
Q 024096 115 GHDYMEEFFGCCESLLATHGLL 136 (272)
Q Consensus 115 ~~~~~~~~l~~~~~~LkpgG~l 136 (272)
+++..+++++.+.|||||+|
T Consensus 80 --~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 --EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred --hhHHHHHHHHHHHcCCCCCC
Confidence 67789999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-15 Score=126.35 Aligned_cols=128 Identities=24% Similarity=0.318 Sum_probs=97.8
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhc
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH 113 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~ 113 (272)
+|.+|||+|||+|.+++..++....+++|+|++|..++.+++|++.|+++..++....+....+..++||+|+++=..+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~- 240 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAE- 240 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHH-
Confidence 8899999999999999998886334699999999999999999999988643444444545444557999999975322
Q ss_pred cChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEec
Q 024096 114 VGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENI 192 (272)
Q Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~ 192 (272)
-...+...+.+.+||||+++++-+. -+..+.+...+++.||.+..+...
T Consensus 241 ----vl~~La~~~~~~lkpgg~lIlSGIl--------------------------~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 241 ----VLVELAPDIKRLLKPGGRLILSGIL--------------------------EDQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred ----HHHHHHHHHHHHcCCCceEEEEeeh--------------------------HhHHHHHHHHHHhCCCeEeEEEec
Confidence 2468899999999999999996432 122333344555689999876654
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=119.99 Aligned_cols=110 Identities=15% Similarity=0.263 Sum_probs=88.9
Q ss_pred HHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEE
Q 024096 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIIS 107 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~ 107 (272)
..++...-.++||+|||.|.++..|+.+ -.+++++|+|+..++.|++++... ++|++.++|+.+..++++||+|+.
T Consensus 37 aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P~~~FDLIV~ 112 (201)
T PF05401_consen 37 AALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWPEGRFDLIVL 112 (201)
T ss_dssp HHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT---SS-EEEEEE
T ss_pred HhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCCCCCeeEEEE
Confidence 3567666689999999999999999998 458999999999999999998643 489999999988778899999999
Q ss_pred echhhccCh-hhHHHHHHHHHhcCccCcEEEEEee
Q 024096 108 CGMIEHVGH-DYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 108 ~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
.++++++.+ +++..+++++...|+|||.+++..+
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999975 5788999999999999999999654
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-17 Score=131.16 Aligned_cols=172 Identities=25% Similarity=0.390 Sum_probs=132.9
Q ss_pred cccccccCCCCCCHHHHHHHHH--------HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHH
Q 024096 2 TYSCAIFKSEHEDLEVGQMRKV--------SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYA 73 (272)
Q Consensus 2 ~y~~~~~~~~~~~l~~aq~~~~--------~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a 73 (272)
.|..++|+...+.++..-..++ ..++..++..+-.++||+|||||..+..+..+ -.+++|+|+|.+|++.|
T Consensus 85 aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA 163 (287)
T COG4976 85 AYVETLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKA 163 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHH
Confidence 4777888888877777766655 45666677777789999999999999888776 56899999999999999
Q ss_pred HHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCcccc
Q 024096 74 EIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDE 150 (272)
Q Consensus 74 ~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 150 (272)
.++ |+.+ ...++|...+. .+++||+|++..++.+++ ++..++.-....|+|||.+.++.-+.+.+.
T Consensus 164 ~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~--- 232 (287)
T COG4976 164 HEK----GLYD--TLYVAEAVLFLEDLTQERFDLIVAADVLPYLG--ALEGLFAGAAGLLAPGGLFAFSVETLPDDG--- 232 (287)
T ss_pred Hhc----cchH--HHHHHHHHHHhhhccCCcccchhhhhHHHhhc--chhhHHHHHHHhcCCCceEEEEecccCCCC---
Confidence 886 4432 34555544332 458999999999999995 568999999999999999999876655441
Q ss_pred ccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecC
Q 024096 151 YRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 151 ~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272)
.--+.|...+.+.+.+++.+.+..||+++.+++.+
T Consensus 233 --------~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 233 --------GFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred --------CeecchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 11123445566778888888889999999998864
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-15 Score=124.83 Aligned_cols=167 Identities=25% Similarity=0.395 Sum_probs=116.5
Q ss_pred HHHHHHHHcCC----CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 024096 22 KVSVLIEKARV----SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272)
Q Consensus 22 ~~~~l~~~l~~----~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272)
.+..+.+.+.. ..+.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+.. ++.+...|+.+.+
T Consensus 29 ~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~ 106 (224)
T TIGR01983 29 RLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLA 106 (224)
T ss_pred HHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhh
Confidence 34555555442 34789999999999999998885 678999999999999999988876642 6889999988776
Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccC----CCCCCCH
Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFP----GGCLPSL 171 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~ 171 (272)
..++||+|++..+++|+ .++..+++++.++|+|||.+++..................++.....+ ...+.+.
T Consensus 107 ~~~~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (224)
T TIGR01983 107 EKGAKSFDVVTCMEVLEHV--PDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKP 184 (224)
T ss_pred cCCCCCccEEEehhHHHhC--CCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCH
Confidence 23789999999999999 456899999999999999999865432110000000000011111101 1124456
Q ss_pred HHHHHHhhcCCCcEEEEEEecC
Q 024096 172 GRVTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 172 ~~~~~~l~~~~Gf~v~~~~~~~ 193 (272)
.++.+ +++++||+++++....
T Consensus 185 ~~l~~-~l~~~G~~i~~~~~~~ 205 (224)
T TIGR01983 185 SELTS-WLESAGLRVKDVKGLV 205 (224)
T ss_pred HHHHH-HHHHcCCeeeeeeeEE
Confidence 66764 4557999999887654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8e-15 Score=114.59 Aligned_cols=122 Identities=24% Similarity=0.300 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 024096 12 HEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90 (272)
Q Consensus 12 ~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~ 90 (272)
...+.....+. ..+.+|.+.++++++|||||+|+.+..++.. +.++|+++|-+++.++..++|+++.|. +++.++.
T Consensus 14 ~~p~TK~EIRa--l~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~ 90 (187)
T COG2242 14 GGPMTKEEIRA--LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVE 90 (187)
T ss_pred CCCCcHHHHHH--HHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEe
Confidence 34444444443 3678899999999999999999999999965 789999999999999999999999996 6999999
Q ss_pred cccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 91 CDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 91 ~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+|+.+.. ...++|.|+..+. ..+ +.+++.+...|||||++++...+
T Consensus 91 g~Ap~~L~~~~~~daiFIGGg-~~i-----~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 91 GDAPEALPDLPSPDAIFIGGG-GNI-----EEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred ccchHhhcCCCCCCEEEECCC-CCH-----HHHHHHHHHHcCcCCeEEEEeec
Confidence 9987765 3347999999887 544 79999999999999999986554
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=125.89 Aligned_cols=153 Identities=16% Similarity=0.255 Sum_probs=104.3
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccE
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQ-----TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDR 104 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~-----~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~ 104 (272)
...++.+|||+|||+|.++..+++. ++.+++|+|+|+.+++.++++.... ++.+.+.+...++ .+++||+
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~ 132 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDV 132 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccE
Confidence 3356789999999999999888753 3469999999999999998875432 4566777766666 5679999
Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCc-chhh-hhcccCC-----CCCCCHHHHHHH
Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLS-PGFI-KEYIFPG-----GCLPSLGRVTSA 177 (272)
Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-~~~~-~~~~~p~-----~~~~~~~~~~~~ 177 (272)
|+++.+++|+++++...+++++.++++ |.+++.+...+...+..+... .... ..++... ...++.+++.+.
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~l 210 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAAL 210 (232)
T ss_pred EEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHH
Confidence 999999999987767889999999998 666676666543211111000 0001 0011111 134677777754
Q ss_pred hhcCCCcEEEEEEe
Q 024096 178 MTSSSGLCVEHLEN 191 (272)
Q Consensus 178 l~~~~Gf~v~~~~~ 191 (272)
+++ ||.+...--
T Consensus 211 -l~~-Gf~~~~~~~ 222 (232)
T PRK06202 211 -APQ-GWRVERQWP 222 (232)
T ss_pred -hhC-CCeEEeccc
Confidence 445 998875533
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=139.39 Aligned_cols=115 Identities=17% Similarity=0.257 Sum_probs=96.9
Q ss_pred HcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccE
Q 024096 29 KARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDR 104 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~ 104 (272)
.++..++.+|||+|||+|..+..+++. ++.+++|+|+|+.+++.++++....+ .++.++++|..+++ ++++||+
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEE
Confidence 344557889999999999999999887 78899999999999999998876554 36888999988876 4578999
Q ss_pred EEEechhhccC-----------hhhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 105 IISCGMIEHVG-----------HDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 105 V~~~~~~~~~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
|+++.++||+. .++...+++++.++|||||++++.+...+.
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~E 542 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMTE 542 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccCC
Confidence 99999988752 356789999999999999999998766544
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-15 Score=123.15 Aligned_cols=112 Identities=21% Similarity=0.260 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC
Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL 96 (272)
Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 96 (272)
+-.....+++.+.+.++.+|||||||+|.++..+++.. +.+|+++|+++.+++.++++++..+. .++.++++|....
T Consensus 61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~ 139 (212)
T PRK13942 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLG 139 (212)
T ss_pred cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccC
Confidence 34556778888999999999999999999999988872 46999999999999999999998887 4799999998765
Q ss_pred C-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 97 P-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 97 ~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
. ...+||+|++.....+++ +.+.+.|||||++++.
T Consensus 140 ~~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 140 YEENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence 5 557899999987766552 3456689999999884
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-15 Score=127.52 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=92.8
Q ss_pred HcCCCCCCEEEEECCCchHHHH-HHH-Hc-cCCEEEEEcCCHHHHHHHHHHHHH-cCCCCCeEEEEcccCCCC-CCCCcc
Q 024096 29 KARVSKGQEVLDIGCGWGTLAI-EIV-KQ-TGCKYTGITLSEEQLKYAEIKVRE-AGLQDHIRFYLCDYRQLP-KANKYD 103 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~-~l~-~~-~~~~v~gvd~s~~~~~~a~~~~~~-~g~~~~i~~~~~d~~~~~-~~~~fD 103 (272)
.+...++.+|+|||||.|.++. .++ .. ++.+++|+|+++.+++.|++.+.. .++.++++|..+|+.+.. ..+.||
T Consensus 118 ~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FD 197 (296)
T PLN03075 118 QHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYD 197 (296)
T ss_pred HhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcC
Confidence 3333477899999999885543 333 34 778999999999999999999964 788889999999998876 447899
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+|++. +++++..++...+++++.+.|+|||.+++..
T Consensus 198 lVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 198 VVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99999 9999876778999999999999999999853
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-15 Score=119.55 Aligned_cols=121 Identities=21% Similarity=0.381 Sum_probs=98.0
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEE
Q 024096 12 HEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFY 89 (272)
Q Consensus 12 ~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~ 89 (272)
+.++.....+. ..+.++.+.++.+|||+|||+|.++..+++. ++.+|+++|+++.+++.++++++..++.+++.++
T Consensus 20 ~~~~t~~~~r~--~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~ 97 (198)
T PRK00377 20 EIPMTKEEIRA--LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLI 97 (198)
T ss_pred CCCCCHHHHHH--HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEE
Confidence 34455555443 3467888999999999999999999998875 3579999999999999999999998866789999
Q ss_pred EcccCCCC--CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 90 LCDYRQLP--KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 90 ~~d~~~~~--~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+|..+.. ..+.||.|++... ..++..+++.+.+.|+|||++++.
T Consensus 98 ~~d~~~~l~~~~~~~D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 98 KGEAPEILFTINEKFDRIFIGGG-----SEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred EechhhhHhhcCCCCCEEEECCC-----cccHHHHHHHHHHHcCCCcEEEEE
Confidence 99987643 3468999998542 135578999999999999999874
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.5e-15 Score=122.73 Aligned_cols=111 Identities=25% Similarity=0.277 Sum_probs=93.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
..+..+++.+.+.++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.|++++...++ ++++++++|..+..
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCc
Confidence 345778888889999999999999999999999873 35799999999999999999999987 58999999987754
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
...+||+|++.....+++ +.+.+.|+|||++++..
T Consensus 143 ~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMPV 177 (215)
T ss_pred ccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEEE
Confidence 446899999987666553 34678899999999853
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=118.37 Aligned_cols=157 Identities=14% Similarity=0.149 Sum_probs=115.2
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KAN 100 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~ 100 (272)
+.+.+. ++||.+|||+|||.|.+..+|.+..+++..|+|++++.+..+.++ .+.++++|+++.- +++
T Consensus 5 ~~I~~~--I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~ 74 (193)
T PF07021_consen 5 QIIAEW--IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQ 74 (193)
T ss_pred HHHHHH--cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCC
Confidence 344554 458999999999999999999987789999999999988887765 5789999987744 789
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCcccc--c----cCcch--hhhhcccCCCCCCCHH
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDE--Y----RLSPG--FIKEYIFPGGCLPSLG 172 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~----~~~~~--~~~~~~~p~~~~~~~~ 172 (272)
+||.|+.+.+++++ .++..+++++.|+ |...+++.+.+....... . ..... .-.+|-.|+-++.+..
T Consensus 75 sFD~VIlsqtLQ~~--~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~ 149 (193)
T PF07021_consen 75 SFDYVILSQTLQAV--RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIK 149 (193)
T ss_pred CccEEehHhHHHhH--hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHH
Confidence 99999999999999 6778998888765 666777544432221000 0 00111 1234556777888888
Q ss_pred HHHHHhhcCCCcEEEEEEecCccH
Q 024096 173 RVTSAMTSSSGLCVEHLENIGIHY 196 (272)
Q Consensus 173 ~~~~~l~~~~Gf~v~~~~~~~~~~ 196 (272)
++. .+.++.|++|.+..-+....
T Consensus 150 DFe-~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 150 DFE-DLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHH-HHHHHCCCEEEEEEEEcCCC
Confidence 886 56777999998877665433
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.9e-15 Score=125.18 Aligned_cols=124 Identities=24% Similarity=0.299 Sum_probs=92.2
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272)
..++.+|||+|||+|.++..+++....+++|+|+|+.+++.++++...+++..++.+..+| .+||+|+++...
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-------~~fD~Vvani~~ 189 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-------LKADVIVANILA 189 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-------CCcCEEEEcCcH
Confidence 3578899999999999999877753346999999999999999999988775445544433 279999987443
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEe
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLEN 191 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~ 191 (272)
+ ....+++++.++|||||+++++.+.. ...+++.. .+++.||.+.....
T Consensus 190 ~-----~~~~l~~~~~~~LkpgG~lilsgi~~-------------------------~~~~~v~~-~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 190 N-----PLLELAPDLARLLKPGGRLILSGILE-------------------------EQADEVLE-AYEEAGFTLDEVLE 238 (250)
T ss_pred H-----HHHHHHHHHHHhcCCCcEEEEEECcH-------------------------hhHHHHHH-HHHHCCCEEEEEEE
Confidence 2 34688999999999999999965431 12233443 44468999887665
Q ss_pred cC
Q 024096 192 IG 193 (272)
Q Consensus 192 ~~ 193 (272)
.+
T Consensus 239 ~~ 240 (250)
T PRK00517 239 RG 240 (250)
T ss_pred eC
Confidence 43
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.9e-15 Score=130.83 Aligned_cols=129 Identities=15% Similarity=0.288 Sum_probs=101.3
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 024096 5 CAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQ 83 (272)
Q Consensus 5 ~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~ 83 (272)
.++|..+. ++... +.+++.++...+.+|||+|||+|.++..++++ ++.+|+++|+|+.+++.++++++.++..
T Consensus 205 ~gVFs~~~--LD~Gt----rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~ 278 (378)
T PRK15001 205 ANVFSRTG--LDIGA----RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE 278 (378)
T ss_pred CCccCCCC--cChHH----HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence 46676544 33222 33666666555679999999999999999988 7889999999999999999999887643
Q ss_pred --CCeEEEEcccCCCCCCCCccEEEEechhhcc---ChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 84 --DHIRFYLCDYRQLPKANKYDRIISCGMIEHV---GHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 84 --~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.++++...|.....++.+||+|+++..++.. .+....++++.+.+.|+|||.+++.
T Consensus 279 ~~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 279 ALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred cCceEEEEEccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 3689999987654344689999999887643 3344568999999999999999986
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=138.31 Aligned_cols=124 Identities=17% Similarity=0.209 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-
Q 024096 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ- 95 (272)
Q Consensus 17 ~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~- 95 (272)
+.+......+++.+...++.+|||+|||+|.++..+++. ..+++|+|+++.+++.+++.. +..+++.++++|+..
T Consensus 20 ~~~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~ 95 (475)
T PLN02336 20 DLDKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSP 95 (475)
T ss_pred hcCchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEeccccc
Confidence 344444567777877777889999999999999999987 679999999999998876532 223579999999864
Q ss_pred -CC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCC
Q 024096 96 -LP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272)
Q Consensus 96 -~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272)
++ ++++||+|++..+++|+++++...+++++.++|||||++++.+.+..
T Consensus 96 ~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 96 DLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred ccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 44 56799999999999999887788999999999999999999876643
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-15 Score=114.64 Aligned_cols=126 Identities=25% Similarity=0.410 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHcC---CCCC-CEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 024096 17 VGQMRKVSVLIEKAR---VSKG-QEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC 91 (272)
Q Consensus 17 ~aq~~~~~~l~~~l~---~~~~-~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~ 91 (272)
.|+.+.++++.+... +... .+|||+|||.|.+...|++. ...+.+|+|.|+..++.|+..++..+.++.|+|.+.
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~ 125 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL 125 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe
Confidence 578888888887766 4444 49999999999999999998 566799999999999999999999999888999999
Q ss_pred ccCCCC-CCCCccEEEEechhhccCh------hhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 92 DYRQLP-KANKYDRIISCGMIEHVGH------DYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 92 d~~~~~-~~~~fD~V~~~~~~~~~~~------~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
|+.+.. ...+||+|.-.+.+..++- ..+..++..+.++|+|||+++|....
T Consensus 126 DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 126 DITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred eccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence 998866 6689999998887766521 22345788899999999999996443
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-14 Score=117.14 Aligned_cols=117 Identities=19% Similarity=0.286 Sum_probs=92.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
..+..++..+.+.++.+|||+|||+|.++..+++....+++++|+++.+++.+++++..++. ++.++++|+.+..+++
T Consensus 23 ~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~ 100 (223)
T PRK14967 23 QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFR 100 (223)
T ss_pred HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCC
Confidence 33455566667788899999999999999999886334999999999999999999988775 5889999987654557
Q ss_pred CccEEEEechhhccCh-------------------hhHHHHHHHHHhcCccCcEEEEE
Q 024096 101 KYDRIISCGMIEHVGH-------------------DYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~-------------------~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+||+|+++........ .....+++++.++|||||++++.
T Consensus 101 ~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 101 PFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred CeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 8999999854332211 12456888999999999999974
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.7e-15 Score=122.14 Aligned_cols=89 Identities=18% Similarity=0.281 Sum_probs=78.6
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechhh
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIE 112 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~ 112 (272)
++.+|||+|||+|.++..+++..+.+|+|+|+|++|++.+++. ..++++|++++| ++++||+|++..+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecChhh
Confidence 4789999999999999999886557999999999999998764 135789999999 778999999999999
Q ss_pred ccChhhHHHHHHHHHhcCccC
Q 024096 113 HVGHDYMEEFFGCCESLLATH 133 (272)
Q Consensus 113 ~~~~~~~~~~l~~~~~~Lkpg 133 (272)
|+ .++...+++++|+|||.
T Consensus 122 ~~--~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 122 AS--DNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred cc--CCHHHHHHHHHHHhcCc
Confidence 99 56689999999999994
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.8e-15 Score=121.36 Aligned_cols=113 Identities=24% Similarity=0.337 Sum_probs=96.9
Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCc
Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKY 102 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~f 102 (272)
..........+|||+|||+|.++..++++ ..+++++||+++.+.+.|+++.+.+++.+++++++.|+.+.. ...+|
T Consensus 37 ~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 37 AAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred HhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccccc
Confidence 34445556789999999999999999999 669999999999999999999999999999999999999987 33579
Q ss_pred cEEEEechhhccCh----------------hhHHHHHHHHHhcCccCcEEEEE
Q 024096 103 DRIISCGMIEHVGH----------------DYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 103 D~V~~~~~~~~~~~----------------~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
|+|+|+....-.+. -+.+++++.+.++|||||.+.+.
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 99999986543322 24577999999999999999984
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=119.03 Aligned_cols=142 Identities=16% Similarity=0.141 Sum_probs=99.4
Q ss_pred HHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----CCCCCc
Q 024096 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL----PKANKY 102 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~~~~~f 102 (272)
+.+++.++.+|||+|||+|.++..+++. ...+|+++|+++.+++.+.++++.. .++.++.+|+.+. +..++|
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~ 142 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKV 142 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccC
Confidence 4688899999999999999999999987 4469999999999999887776653 4789999998752 123579
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCC
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSS 182 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~ 182 (272)
|+|++.... +.....+++++.++|||||+++++....+-+ ...... ....+.. ..++++
T Consensus 143 D~i~~d~~~----p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d----~~~~~~------------~~~~~~~-~~l~~a 201 (226)
T PRK04266 143 DVIYQDVAQ----PNQAEIAIDNAEFFLKDGGYLLLAIKARSID----VTKDPK------------EIFKEEI-RKLEEG 201 (226)
T ss_pred CEEEECCCC----hhHHHHHHHHHHHhcCCCcEEEEEEeccccc----CcCCHH------------HHHHHHH-HHHHHc
Confidence 999964221 1122456899999999999999952211100 000000 0012233 345568
Q ss_pred CcEEEEEEecC
Q 024096 183 GLCVEHLENIG 193 (272)
Q Consensus 183 Gf~v~~~~~~~ 193 (272)
||++....+++
T Consensus 202 GF~~i~~~~l~ 212 (226)
T PRK04266 202 GFEILEVVDLE 212 (226)
T ss_pred CCeEEEEEcCC
Confidence 99999888865
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-15 Score=121.57 Aligned_cols=106 Identities=24% Similarity=0.264 Sum_probs=87.9
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-CCCC---CCCCccEEEEe
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY-RQLP---KANKYDRIISC 108 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~-~~~~---~~~~fD~V~~~ 108 (272)
++.+|||+|||+|..+..+++. ++.+++|+|+|+.+++.+++++...++ .++.++++|+ ..++ ++++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 6789999999999999999887 678999999999999999999988877 5799999998 6554 35789999997
Q ss_pred chhhccC------hhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 109 GMIEHVG------HDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 109 ~~~~~~~------~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
....+.. ......+++++.++|||||++++..
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 6543221 0124689999999999999999853
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-14 Score=121.74 Aligned_cols=103 Identities=26% Similarity=0.376 Sum_probs=85.4
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIE 112 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~ 112 (272)
.++.+|||+|||+|.++..+++....+|+++|+++.+++.++++...+++..++.+...+.... ..++||+|+++...+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILAE 236 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCHH
Confidence 4678999999999999998887644589999999999999999999998877777777764332 346899999976544
Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
+ ...+++++.++|||||+++++.+
T Consensus 237 ~-----l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 237 V-----IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred H-----HHHHHHHHHHHcCCCcEEEEEeC
Confidence 3 36889999999999999998654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-14 Score=113.07 Aligned_cols=114 Identities=22% Similarity=0.338 Sum_probs=90.8
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC-eEEEEcccCCCCCCCCccE
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH-IRFYLCDYRQLPKANKYDR 104 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~-i~~~~~d~~~~~~~~~fD~ 104 (272)
+.+.+...++.+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++..+++.++ +.++++|+.+...+.+||+
T Consensus 15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~ 93 (188)
T PRK14968 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDV 93 (188)
T ss_pred HHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceE
Confidence 334444467889999999999999999997 88999999999999999999988877533 8899999766444458999
Q ss_pred EEEechhhccC-------------------hhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 105 IISCGMIEHVG-------------------HDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 105 V~~~~~~~~~~-------------------~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
|+++..+.+.+ ......+++++.++|||||.+++..
T Consensus 94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 99876543311 1234678999999999999998743
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-14 Score=125.83 Aligned_cols=115 Identities=24% Similarity=0.316 Sum_probs=94.9
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKY 102 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~f 102 (272)
..+++.....++.+|||+|||+|.++..++.. +.+++|+|+++.++..++.+++..++++ +.+.++|+.+++ .+++|
T Consensus 172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCC
Confidence 34555667788999999999999999887764 8899999999999999999999988864 899999999988 56799
Q ss_pred cEEEEechhhcc-------ChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 103 DRIISCGMIEHV-------GHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 103 D~V~~~~~~~~~-------~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
|+|+++...... ..+....+++++.++|||||++++..
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 999997543211 11225789999999999999998853
|
This family is found exclusively in the Archaea. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-14 Score=113.52 Aligned_cols=111 Identities=23% Similarity=0.278 Sum_probs=96.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-CCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-PKA 99 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~~~ 99 (272)
.....+++.+.++++++|||||||+|..+..|++. ..+|+.+|..+...+.|+++++..|+. |+.++++|...- ++.
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCC
Confidence 34578899999999999999999999999999997 449999999999999999999999986 599999997664 466
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
.+||.|+.......+|.. +.+.||+||++++-.-
T Consensus 137 aPyD~I~Vtaaa~~vP~~--------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPEA--------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCHH--------HHHhcccCCEEEEEEc
Confidence 899999999988888643 4556899999998443
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=122.32 Aligned_cols=103 Identities=29% Similarity=0.388 Sum_probs=80.2
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272)
..++.+|||+|||+|.+++..++....+|+++|++|..++.|++|+..|++.+++.+. ...+. ...+||+|+++-..
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~-~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL-VEGKFDLVVANILA 235 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT-CCS-EEEEEEES-H
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc-ccccCCEEEECCCH
Confidence 4577899999999999999988863348999999999999999999999998766553 22222 23899999997543
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
. .+..++..+.+.|+|||+++++-+.
T Consensus 236 ~-----vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 236 D-----VLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp H-----HHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred H-----HHHHHHHHHHHhhCCCCEEEEcccc
Confidence 3 3478888999999999999997553
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.4e-15 Score=108.96 Aligned_cols=106 Identities=27% Similarity=0.496 Sum_probs=89.0
Q ss_pred CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEechh
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCGMI 111 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~~~ 111 (272)
|.+|||+|||+|.++..+++....+++|+|+++..++.++.++...++.++++++++|+.+.. .+++||+|+++..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 569999999999999999987448999999999999999999999988788999999998865 56899999999887
Q ss_pred hccCh------hhHHHHHHHHHhcCccCcEEEEEe
Q 024096 112 EHVGH------DYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 112 ~~~~~------~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
..... +....+++++.++|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 64311 234688999999999999999854
|
... |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.2e-14 Score=123.46 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=91.7
Q ss_pred HHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 024096 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272)
.+++.+......+|||+|||+|.++..+++. ++.+++++|+|+.+++.++++++.+++. .+++..|.... .+++||
T Consensus 187 lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~~~~fD 263 (342)
T PRK09489 187 LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-IKGRFD 263 (342)
T ss_pred HHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-cCCCcc
Confidence 3445555444568999999999999999988 6789999999999999999999998863 56777886543 347899
Q ss_pred EEEEechhhccC---hhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 104 RIISCGMIEHVG---HDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 104 ~V~~~~~~~~~~---~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+|+++..+|+.. ......+++++.+.|||||.+++..
T Consensus 264 lIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 264 MIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred EEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 999999887632 2456789999999999999998854
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=117.46 Aligned_cols=107 Identities=20% Similarity=0.289 Sum_probs=88.3
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRIIS 107 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V~~ 107 (272)
....+|||||||+|.++..+++. ++..++|+|+++.+++.+++++...++. +++++++|+.+++ +++.+|.|++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 35569999999999999999988 7889999999999999999999888885 8999999997653 3458999999
Q ss_pred echhhccChh------hHHHHHHHHHhcCccCcEEEEEe
Q 024096 108 CGMIEHVGHD------YMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 108 ~~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+....+...+ ....+++++.++|||||.+++.+
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 8654433110 01579999999999999999853
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.1e-14 Score=118.79 Aligned_cols=107 Identities=23% Similarity=0.365 Sum_probs=87.2
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272)
.++.+|||+|||+|.++..+++. ++.+++++|+|+.+++.|++++..+++.+++.++++|+.+..++++||+|+++...
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 45579999999999999999987 67899999999999999999999998877899999998653344589999997432
Q ss_pred ------hcc-------C----------hhhHHHHHHHHHhcCccCcEEEEE
Q 024096 112 ------EHV-------G----------HDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 112 ------~~~-------~----------~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.++ + .+....+++++.+.|+|||++++.
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 111 1 022367889999999999999874
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.7e-14 Score=114.83 Aligned_cols=154 Identities=13% Similarity=0.182 Sum_probs=102.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CC--CC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-LP--KA 99 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-~~--~~ 99 (272)
++.+.+.+ +++.+|||+|||+|.++..+++..+..++|+|+++.+++.+++. +++++++|+.+ ++ ++
T Consensus 4 ~~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~ 73 (194)
T TIGR02081 4 LESILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPD 73 (194)
T ss_pred HHHHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCC
Confidence 34455554 36789999999999999988876667899999999999888642 46888899875 32 45
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCc--cccccC-cchhhh----hc-ccCCCCCCCH
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQC--YDEYRL-SPGFIK----EY-IFPGGCLPSL 171 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~~~~-~~~~~~----~~-~~p~~~~~~~ 171 (272)
++||+|++..+++|+ .++..+++++.+.++ .++++.+...... ...... ...... .+ -.+..++.+.
T Consensus 74 ~sfD~Vi~~~~l~~~--~d~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 148 (194)
T TIGR02081 74 KSFDYVILSQTLQAT--RNPEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTI 148 (194)
T ss_pred CCcCEEEEhhHhHcC--cCHHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcH
Confidence 789999999999999 456888998887655 4444322111000 000000 000000 00 1123356778
Q ss_pred HHHHHHhhcCCCcEEEEEEec
Q 024096 172 GRVTSAMTSSSGLCVEHLENI 192 (272)
Q Consensus 172 ~~~~~~l~~~~Gf~v~~~~~~ 192 (272)
+++. .+.+++||++.....+
T Consensus 149 ~~~~-~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 149 ADFE-DLCGELNLRILDRAAF 168 (194)
T ss_pred HHHH-HHHHHCCCEEEEEEEe
Confidence 8887 4666799999887665
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=112.18 Aligned_cols=115 Identities=20% Similarity=0.200 Sum_probs=92.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P 97 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~ 97 (272)
...-..+++.+...++.+|||+|||+|.++..+++. ++.+++++|+++.+++.+++++...++ ++++++.+|+.+. +
T Consensus 26 ~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~ 104 (196)
T PRK07402 26 REVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLA 104 (196)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHh
Confidence 333345677888888999999999999999999876 678999999999999999999988887 4799999998652 2
Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
....+|.|+... ......+++++.+.|+|||++++...
T Consensus 105 ~~~~~~d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 105 QLAPAPDRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred hCCCCCCEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 223467776532 13457899999999999999998654
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-13 Score=113.96 Aligned_cols=117 Identities=25% Similarity=0.407 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA 99 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~ 99 (272)
..++.+++.+. ..+.+|||+|||+|.++..+++. ++.+++|+|+++.+++.+++++...++. ++.++++|+.+..+.
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~ 152 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPG 152 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcC
Confidence 34455566554 34569999999999999999987 6789999999999999999999988874 799999998764456
Q ss_pred CCccEEEEechhhc------cCh------------------hhHHHHHHHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGMIEH------VGH------------------DYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~~~~------~~~------------------~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
++||+|+++..... +.. .....+++++.++|+|||.+++.
T Consensus 153 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 78999999754331 111 11246889999999999999984
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.2e-14 Score=114.07 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
+......+++.+.+.++.+|||+|||+|..+..+++. ..+++++|+++.+++.+++++...++. ++.+.++|..+..
T Consensus 63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~ 140 (212)
T PRK00312 63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWP 140 (212)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCC
Confidence 3444567788888889999999999999999988876 458999999999999999999988874 6999999976543
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
..++||+|++...++++ .+.+.+.|+|||++++...
T Consensus 141 ~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 AYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 44789999998766655 2456789999999998544
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.4e-14 Score=115.44 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC
Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272)
Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272)
.+-..+..+++.+.+++|++|||||||+|..+..++.. ...+|+++|.++...+.|++++...+.. ++.++++|...
T Consensus 56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~ 134 (209)
T PF01135_consen 56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSE 134 (209)
T ss_dssp --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGG
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhh
Confidence 34455688999999999999999999999999999987 2347999999999999999999998874 89999999766
Q ss_pred CC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 96 LP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 96 ~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.. ...+||.|++......+|. . +.+.|++||++++-
T Consensus 135 g~~~~apfD~I~v~~a~~~ip~----~----l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTAAVPEIPE----A----LLEQLKPGGRLVAP 171 (209)
T ss_dssp TTGGG-SEEEEEESSBBSS--H----H----HHHTEEEEEEEEEE
T ss_pred ccccCCCcCEEEEeeccchHHH----H----HHHhcCCCcEEEEE
Confidence 44 4578999999987776632 2 56678999999984
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-14 Score=115.60 Aligned_cols=150 Identities=15% Similarity=0.242 Sum_probs=112.9
Q ss_pred EEEEECCCchHHHHHHHHc-cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEe
Q 024096 37 EVLDIGCGWGTLAIEIVKQ-TG--CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIISC 108 (272)
Q Consensus 37 ~vLDiG~G~G~~~~~l~~~-~~--~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~~ 108 (272)
+|||+|||.|.....+.+. ++ ..++++|.||..++..+++..... .++...+.|+.... ..+++|.|+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 8999999999999999887 44 799999999999999988765443 46666666654432 56899999999
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhh--hhcccCCCC---CCCHHHHHHHhhcCCC
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFI--KEYIFPGGC---LPSLGRVTSAMTSSSG 183 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~---~~~~~~~~~~l~~~~G 183 (272)
.++..++++.....+++++++|||||.+++.|+...+-....+. ....+ +-|+...|. +.+.+++ +.+..++|
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~-~~~~i~~nfYVRgDGT~~YfF~~eeL-~~~f~~ag 229 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFK-KGQCISENFYVRGDGTRAYFFTEEEL-DELFTKAG 229 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhcc-CCceeecceEEccCCceeeeccHHHH-HHHHHhcc
Confidence 99999999999999999999999999999999887665433332 12222 334554444 2345555 46666799
Q ss_pred cEEEEEE
Q 024096 184 LCVEHLE 190 (272)
Q Consensus 184 f~v~~~~ 190 (272)
|..++..
T Consensus 230 f~~~~~~ 236 (264)
T KOG2361|consen 230 FEEVQLE 236 (264)
T ss_pred cchhccc
Confidence 9776543
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.7e-14 Score=121.90 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=96.4
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KA 99 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~ 99 (272)
+.+++.+....+..+||||||+|..+..+|+. ++..++|+|+++.+++.+.+++...++. ++.++++|+..+. ++
T Consensus 112 ~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~ 190 (390)
T PRK14121 112 DNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPS 190 (390)
T ss_pred HHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCC
Confidence 35666666667789999999999999999998 7889999999999999999999998885 7999999987642 56
Q ss_pred CCccEEEEechhhccChhh----HHHHHHHHHhcCccCcEEEEEe
Q 024096 100 NKYDRIISCGMIEHVGHDY----MEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+++|.|++.....|...+. ...+++++.++|+|||.+.+.+
T Consensus 191 ~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 191 NSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 8999999977655431111 1579999999999999999853
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=115.50 Aligned_cols=129 Identities=22% Similarity=0.363 Sum_probs=101.1
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 024096 4 SCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGL 82 (272)
Q Consensus 4 ~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~ 82 (272)
..|+|+.+..+.. .+.+++.++...+.+|||+|||.|.++..+++. +..+++.+|+|...++.+++++..+++
T Consensus 134 ~pGVFS~~~lD~G------S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~ 207 (300)
T COG2813 134 LPGVFSRDKLDKG------SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV 207 (300)
T ss_pred CCCCCcCCCcChH------HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC
Confidence 3456655443322 245778888777779999999999999999999 788999999999999999999999987
Q ss_pred CCCeEEEEcccCCCCCCCCccEEEEechhhccChhhHH----HHHHHHHhcCccCcEEEEEee
Q 024096 83 QDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME----EFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 83 ~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~~~~~----~~l~~~~~~LkpgG~l~i~~~ 141 (272)
+ +..++..|..+-..+ +||+|+|+..||- +.+-.. ++++...+.|++||.|.+..-
T Consensus 208 ~-~~~v~~s~~~~~v~~-kfd~IisNPPfh~-G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 208 E-NTEVWASNLYEPVEG-KFDLIISNPPFHA-GKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred C-ccEEEEecccccccc-cccEEEeCCCccC-CcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 5 336777775544333 9999999999873 323233 899999999999999998533
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-13 Score=116.44 Aligned_cols=106 Identities=19% Similarity=0.311 Sum_probs=86.8
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEech--
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGM-- 110 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~-- 110 (272)
+..+|||+|||+|.++..++.. ++.+++++|+|+.+++.+++++..+++.+++.++++|+.+..+..+||+|+++..
T Consensus 114 ~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 114 PILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCC
Confidence 3369999999999999999987 6689999999999999999999998886679999999876434448999999732
Q ss_pred -----------hhccCh----------hhHHHHHHHHHhcCccCcEEEEE
Q 024096 111 -----------IEHVGH----------DYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 111 -----------~~~~~~----------~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..|-|. +....+++++.+.|+|||++++.
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 222211 24567899999999999999884
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=114.66 Aligned_cols=114 Identities=21% Similarity=0.277 Sum_probs=96.9
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKY 102 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~f 102 (272)
..+.+..+..+..+|+|||+|.|.++..++++ |+.+++.+|+ |..++.+++ .++++++.+|+. -+.+. +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P~-~ 159 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLPV-A 159 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCSS-E
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhcc-c
Confidence 55667778888889999999999999999998 9999999998 888888887 369999999997 33224 9
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccC--cEEEEEeecCCCCc
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATH--GLLVLQFISAPDQC 147 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~i~~~~~~~~~ 147 (272)
|+|+...++|++++++...+|+++++.|+|| |+|+|.+...++..
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSS
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCC
Confidence 9999999999999999999999999999999 99999998876653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-13 Score=117.59 Aligned_cols=105 Identities=24% Similarity=0.377 Sum_probs=86.3
Q ss_pred CCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh--
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI-- 111 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~-- 111 (272)
+.+|||+|||+|.++..++.. ++.+++++|+|+.+++.|+++++.+++.++++++++|+.+..++++||+|+++...
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 368999999999999999987 67899999999999999999999988877899999998653344689999997422
Q ss_pred -----------hccC----------hhhHHHHHHHHHhcCccCcEEEEE
Q 024096 112 -----------EHVG----------HDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 112 -----------~~~~----------~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.|-| .+....+++++.+.|+|||++++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1111 123467899999999999999984
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.6e-13 Score=112.55 Aligned_cols=116 Identities=23% Similarity=0.367 Sum_probs=90.1
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272)
++.++..+...++.+|||+|||+|.++..++.. +..+++++|+|+.+++.+++++. .....++.++++|+.+....++
T Consensus 97 ~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~ 175 (275)
T PRK09328 97 VEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGR 175 (275)
T ss_pred HHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCc
Confidence 344444555667889999999999999999988 67899999999999999999987 3334589999999865434578
Q ss_pred ccEEEEechhhc------cC------------------hhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEH------VG------------------HDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~------~~------------------~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
||+|+++....- +. .+....+++++.++|+|||++++.
T Consensus 176 fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 176 FDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred eeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 999999653211 10 123467888999999999999983
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-13 Score=109.65 Aligned_cols=165 Identities=17% Similarity=0.209 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHcCCC------CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEE
Q 024096 15 LEVGQMRKVSVLIEKARVS------KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRF 88 (272)
Q Consensus 15 l~~aq~~~~~~l~~~l~~~------~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~ 88 (272)
+......--+..+.++... ...+.||.|+|.|..+..+....-.+|..+|+.+..++.|++.+.... .....+
T Consensus 30 is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~ 108 (218)
T PF05891_consen 30 ISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEF 108 (218)
T ss_dssp GHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEE
T ss_pred CChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceE
Confidence 3444444455666665543 357999999999999987766545699999999999999998765421 234678
Q ss_pred EEcccCCCCC-CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCC
Q 024096 89 YLCDYRQLPK-ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGC 167 (272)
Q Consensus 89 ~~~d~~~~~~-~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 167 (272)
++..+++..| +.+||+||+.+++.|++|+++..+|++|...|+|+|.+++-+-...... ..+....+- .
T Consensus 109 ~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~-~~~D~~DsS---------v 178 (218)
T PF05891_consen 109 YCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF-DEFDEEDSS---------V 178 (218)
T ss_dssp EES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE-EEEETTTTE---------E
T ss_pred EecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC-cccCCccCe---------e
Confidence 8898998875 4799999999999999999999999999999999999999766644331 111111111 1
Q ss_pred CCCHHHHHHHhhcCCCcEEEEEEe
Q 024096 168 LPSLGRVTSAMTSSSGLCVEHLEN 191 (272)
Q Consensus 168 ~~~~~~~~~~l~~~~Gf~v~~~~~ 191 (272)
..+...+ ..+.+++|++++..+.
T Consensus 179 TRs~~~~-~~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 179 TRSDEHF-RELFKQAGLRLVKEEK 201 (218)
T ss_dssp EEEHHHH-HHHHHHCT-EEEEEEE
T ss_pred ecCHHHH-HHHHHHcCCEEEEecc
Confidence 1233334 4677789999887554
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.2e-13 Score=111.42 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=80.9
Q ss_pred HHcCCCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCC
Q 024096 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANK 101 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~ 101 (272)
+.+.+.++++|||+|||+|.++..+++.. ..+|+++|+++.+.+...+.+... .++.++.+|+.... ..++
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCC
Confidence 45668899999999999999999999983 468999999988665555544332 47899999986421 3468
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|+|++... .+ ++...++.++.++|||||++++.
T Consensus 203 vDvV~~Dva---~p-dq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 203 VDVIFADVA---QP-DQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCEEEEeCC---Cc-chHHHHHHHHHHhccCCCEEEEE
Confidence 999999764 12 33456777899999999999983
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-13 Score=116.83 Aligned_cols=94 Identities=21% Similarity=0.343 Sum_probs=77.2
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-c---CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-T---GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIIS 107 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~---~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~ 107 (272)
.++.+|||+|||+|.++..+++. + +.+++|+|+|+.+++.|+++. .++.+.++|+.++| ++++||+|++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEE
Confidence 45578999999999999998875 3 247999999999999997652 36889999999988 6789999998
Q ss_pred echhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 108 CGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
... +..++++.++|||||++++..+
T Consensus 158 ~~~---------~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 158 IYA---------PCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred ecC---------CCCHHHHHhhccCCCEEEEEeC
Confidence 643 1345788999999999998643
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.7e-13 Score=119.47 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=95.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272)
.....+...++..++.+|||+|||+|..+..+++. .+.+|+++|+++.+++.++++++..|+ ++.++++|+.+.+
T Consensus 231 ~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~ 308 (427)
T PRK10901 231 AAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQW 308 (427)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhh
Confidence 33345566778889999999999999999999987 447999999999999999999999886 3789999998764
Q ss_pred -CCCCccEEEEechhhcc-------------Ch-------hhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 98 -KANKYDRIISCGMIEHV-------------GH-------DYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~-------------~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
..++||.|++....... .. +....+++.+.+.|||||++++++.+.
T Consensus 309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 24689999975432110 11 113478999999999999999987653
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.4e-13 Score=116.17 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=87.1
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KA 99 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~ 99 (272)
++.+++.+ .++.+|||+|||+|.++..+++. ++++++++|+|+.+++.++++++.++. ++.++++|+.+.. ..
T Consensus 242 Ve~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~~ 317 (423)
T PRK14966 242 VEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPSE 317 (423)
T ss_pred HHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccccC
Confidence 34444443 35679999999999999999876 788999999999999999999988764 7999999986543 34
Q ss_pred CCccEEEEechhhccC-----------------------hhhHHHHHHHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGMIEHVG-----------------------HDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~-----------------------~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
++||+|+++.....-. .+....+++.+.+.|+|||.+++.
T Consensus 318 ~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 318 GKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred CCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 5899999987431110 012346777888999999998873
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=107.38 Aligned_cols=115 Identities=19% Similarity=0.217 Sum_probs=95.4
Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-----------cCCCCCeEEEEcccCC
Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVRE-----------AGLQDHIRFYLCDYRQ 95 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~-----------~g~~~~i~~~~~d~~~ 95 (272)
+..+...++.+||..|||.|..+.+|++. |.+|+|+|+|+..++.+.+.... .--..+++++++|+.+
T Consensus 36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~ 114 (226)
T PRK13256 36 FSKLNINDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN 114 (226)
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC
Confidence 45556567789999999999999999997 88999999999999987552100 0012478999999999
Q ss_pred CCC----CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 96 LPK----ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 96 ~~~----~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+++ .++||+|+-..++++++++...++.+.+.++|+|||.+++..+.
T Consensus 115 l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 115 LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 862 25899999999999999988999999999999999999886554
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=120.44 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=85.6
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhh
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIE 112 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~ 112 (272)
++.+|||+|||+|.++..++.. ++.+++++|+|+.+++.|++++..+++.+++.++++|+.+..+.++||+|+++....
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 3568999999999999999877 778999999999999999999998888778999999976533446899999975321
Q ss_pred --------------ccC----------hhhHHHHHHHHHhcCccCcEEEEE
Q 024096 113 --------------HVG----------HDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 113 --------------~~~----------~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
|-| -+....+++++.++|+|||.+++.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 111 023455788889999999999874
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.8e-13 Score=114.90 Aligned_cols=114 Identities=16% Similarity=0.204 Sum_probs=88.7
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-CC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P-KA 99 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~-~~ 99 (272)
+.+.+.+ .++.+|||+|||+|..+..+++. . +.+++++|+|+.+++.+++++.......++.++++|+.+. + ..
T Consensus 55 ~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~ 132 (301)
T TIGR03438 55 DEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP 132 (301)
T ss_pred HHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc
Confidence 3344444 46689999999999999999987 3 6899999999999999999887643223577899998763 3 21
Q ss_pred C----CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 100 N----KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~----~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
. ...++++..++.+++.++...+++++++.|+|||.+++.
T Consensus 133 ~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 133 EPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 1 233455556788888888889999999999999999984
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-13 Score=109.64 Aligned_cols=109 Identities=18% Similarity=0.246 Sum_probs=83.4
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 22 KVSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 22 ~~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
++..+.+++. ++++.+|||+|||+|.++..+++. ...+|+++|+++. ... .++.++++|+.+.+
T Consensus 38 kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~ 105 (209)
T PRK11188 38 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPI-VGVDFLQGDFRDELV 105 (209)
T ss_pred hhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCC-CCcEEEecCCCChHH
Confidence 4455666666 578899999999999999999987 3469999999881 122 36899999998842
Q ss_pred --------CCCCccEEEEechhhccChhh---------HHHHHHHHHhcCccCcEEEEEeec
Q 024096 98 --------KANKYDRIISCGMIEHVGHDY---------MEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 98 --------~~~~fD~V~~~~~~~~~~~~~---------~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
.+++||+|++..+.++.+... ...+++++.++|+|||.+++..+.
T Consensus 106 ~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 106 LKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred HHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 357899999977655543211 146899999999999999996544
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5e-13 Score=115.45 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=91.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272)
-..+..+++.++++++.+|||+|||+|.++..+++..+ .+|+++|+++.+++.|+++++..+. +++.++++|..+..
T Consensus 66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~ 144 (322)
T PRK13943 66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcc
Confidence 34556788888888999999999999999999998732 4799999999999999999998887 47999999987665
Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
...+||+|++...+.+++ ..+.+.|+|||++++..
T Consensus 145 ~~~~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccCCccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 446799999976655442 23567899999998743
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.4e-13 Score=108.11 Aligned_cols=109 Identities=21% Similarity=0.283 Sum_probs=98.4
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272)
..++..+++.+|++|||.|.|+|.++..|+.. +..+|+.+|+.+...+.|++|++..++.+++.+..+|+.+...++.
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~ 163 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEED 163 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccc
Confidence 46788899999999999999999999999986 5579999999999999999999999998889999999998885569
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
||+|+.. + .++-.+++++.+.|+|||.+++-
T Consensus 164 vDav~LD-----m--p~PW~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 164 VDAVFLD-----L--PDPWNVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred cCEEEEc-----C--CChHHHHHHHHHHhCCCcEEEEE
Confidence 9999974 4 45689999999999999999973
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=117.80 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=95.5
Q ss_pred HHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC
Q 024096 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KAN 100 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~ 100 (272)
.+...++..+|.+|||+|||+|+.+..+++. .+.+|+++|+++.+++.++++++..|+. ++++.++|...++ ..+
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~ 306 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQD 306 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhc
Confidence 3445567889999999999999999999987 3579999999999999999999999885 6999999998776 356
Q ss_pred CccEEEEechhhcc------C-------h-------hhHHHHHHHHHhcCccCcEEEEEeecCC
Q 024096 101 KYDRIISCGMIEHV------G-------H-------DYMEEFFGCCESLLATHGLLVLQFISAP 144 (272)
Q Consensus 101 ~fD~V~~~~~~~~~------~-------~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272)
+||.|++....... + . +...++++++.+.|||||.+++++.+..
T Consensus 307 ~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 307 TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 89999975322111 1 1 1235679999999999999999877643
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9e-13 Score=109.34 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=89.1
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--- 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--- 97 (272)
+..++..+++.||++|||.|+|+|.++..|++. +..+|+.+|+.++..+.|+++++..|+.+++.+.+.|+.+..
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 367889999999999999999999999999987 668999999999999999999999999889999999986432
Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcC-ccCcEEEE
Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLL-ATHGLLVL 138 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~i 138 (272)
.+..+|.|+.. + .++-..+..+.+.| ||||++++
T Consensus 109 ~~~~~~DavfLD-----l--p~Pw~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 109 ELESDFDAVFLD-----L--PDPWEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp T-TTSEEEEEEE-----S--SSGGGGHHHHHHHE-EEEEEEEE
T ss_pred cccCcccEEEEe-----C--CCHHHHHHHHHHHHhcCCceEEE
Confidence 23689999985 3 23467888999999 89999987
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.5e-13 Score=119.21 Aligned_cols=126 Identities=19% Similarity=0.187 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
......+...++..++.+|||+|||+|+.+..+++. ++.+++++|+++.+++.++++++..|+...+.+..+|....+
T Consensus 224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 333455667778889999999999999999999987 457999999999999999999999887533445777766544
Q ss_pred --CCCCccEEEEe------chhhccCh--------------hhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 98 --KANKYDRIISC------GMIEHVGH--------------DYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 98 --~~~~fD~V~~~------~~~~~~~~--------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
..++||.|++. +++.+.++ +....+++++.++|||||++++++.+...
T Consensus 304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 35689999974 33443332 11367999999999999999998877543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=117.44 Aligned_cols=120 Identities=19% Similarity=0.230 Sum_probs=96.8
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--- 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--- 97 (272)
...+...+...+|.+|||+|||+|+.+..+++. ...+|+++|+++.+++.++++++..|+. ++.++++|+.+.+
T Consensus 241 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 241 AQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELK 319 (434)
T ss_pred HHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhccccc
Confidence 344556677889999999999999999999987 2469999999999999999999999985 6999999998765
Q ss_pred --CCCCccEEEEec------hhhccCh-------h-------hHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 98 --KANKYDRIISCG------MIEHVGH-------D-------YMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 98 --~~~~fD~V~~~~------~~~~~~~-------~-------~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
..++||.|++.. ++.+-++ + ....+++++.+.|||||+++.++.+.
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 136899999753 3333322 1 14678999999999999999887664
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.3e-13 Score=105.76 Aligned_cols=84 Identities=17% Similarity=0.119 Sum_probs=71.6
Q ss_pred EEEcCCHHHHHHHHHHHHHc--CCCCCeEEEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 61 TGITLSEEQLKYAEIKVREA--GLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 61 ~gvd~s~~~~~~a~~~~~~~--g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
+|+|+|+.|++.|+++.+.. +...+++++++|+.++| ++++||+|++..+++++ .++..++++++++|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV--VDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC--CCHHHHHHHHHHHcCcCeEEE
Confidence 58999999999998776532 22347999999999999 67799999999999999 466899999999999999999
Q ss_pred EEeecCCCC
Q 024096 138 LQFISAPDQ 146 (272)
Q Consensus 138 i~~~~~~~~ 146 (272)
+.++..++.
T Consensus 79 i~d~~~~~~ 87 (160)
T PLN02232 79 ILDFNKSNQ 87 (160)
T ss_pred EEECCCCCh
Confidence 988876543
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.5e-13 Score=108.15 Aligned_cols=152 Identities=23% Similarity=0.294 Sum_probs=109.1
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-c------C----CCCCeEEEEc
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVRE-A------G----LQDHIRFYLC 91 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~-~------g----~~~~i~~~~~ 91 (272)
+..+++.+...++.+||..|||.|..+.+|+++ |.+|+|+|+|+..++.+.+.... . + -.++|+++++
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 445556677788889999999999999999997 88999999999999998443221 0 0 1236899999
Q ss_pred ccCCCCCC--CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCC
Q 024096 92 DYRQLPKA--NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLP 169 (272)
Q Consensus 92 d~~~~~~~--~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 169 (272)
|+.++++. ++||+|+=..+++.++.+.+..+.+.+.++|+|||.+++.....+..... -.|. ..
T Consensus 105 DfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~------------GPPf--~v 170 (218)
T PF05724_consen 105 DFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME------------GPPF--SV 170 (218)
T ss_dssp -TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS------------SSS-----
T ss_pred ccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC------------CcCC--CC
Confidence 99998833 57999999999999999999999999999999999966554443221100 0010 12
Q ss_pred CHHHHHHHhhcCCCcEEEEEEe
Q 024096 170 SLGRVTSAMTSSSGLCVEHLEN 191 (272)
Q Consensus 170 ~~~~~~~~l~~~~Gf~v~~~~~ 191 (272)
+.+++. .+.. .+|++..++.
T Consensus 171 ~~~ev~-~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 171 TEEEVR-ELFG-PGFEIEELEE 190 (218)
T ss_dssp -HHHHH-HHHT-TTEEEEEEEE
T ss_pred CHHHHH-HHhc-CCcEEEEEec
Confidence 344554 5564 8999888776
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=118.18 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=94.1
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272)
....+...+|.+|||+|||+|+.+..+++. .+.+|+++|+++.+++.++++++..|+. +++++++|+.+.+++++||
T Consensus 242 ~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~fD 320 (445)
T PRK14904 242 ACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQPD 320 (445)
T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCCC
Confidence 445567778999999999999999998876 3469999999999999999999999884 7999999998877667899
Q ss_pred EEEEec------hhh-------ccChh-------hHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 104 RIISCG------MIE-------HVGHD-------YMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 104 ~V~~~~------~~~-------~~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
+|++.. ++. +...+ ....++.++.+.|||||++++++.+.
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999742 111 11111 23468999999999999999987764
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-12 Score=116.31 Aligned_cols=118 Identities=21% Similarity=0.259 Sum_probs=94.3
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KA 99 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~ 99 (272)
..+...+...++.+|||+|||+|..+..+++. ++.+++++|+++.+++.++++++..|+. ++.++++|+.+.. ..
T Consensus 240 ~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~ 318 (444)
T PRK14902 240 MLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFA 318 (444)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhc
Confidence 34555677788999999999999999999986 3579999999999999999999999985 5999999998764 23
Q ss_pred CCccEEEEechhh------ccCh-------h-------hHHHHHHHHHhcCccCcEEEEEeec
Q 024096 100 NKYDRIISCGMIE------HVGH-------D-------YMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 100 ~~fD~V~~~~~~~------~~~~-------~-------~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
++||+|++..... +.|+ . ....+++++.++|||||+++.++.+
T Consensus 319 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 319 EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 6899999864321 1110 1 1246899999999999999987655
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-12 Score=109.38 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=92.6
Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCcc
Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYD 103 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD 103 (272)
...++..++.+|||+|||+|+.+..+++.. ..+|+++|+++.+++.++++++..++. ++.+++.|...++ ..+.||
T Consensus 64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCC
Confidence 345677899999999999999999998862 469999999999999999999999884 6999999988766 446799
Q ss_pred EEEEechhh------cc-------Ch-------hhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 104 RIISCGMIE------HV-------GH-------DYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 104 ~V~~~~~~~------~~-------~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
.|++..... +- .. +....+++++.++|||||+++.++.+.
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999753221 11 11 123569999999999999999887664
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-12 Score=102.29 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=116.4
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---C------CCCcc
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---K------ANKYD 103 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~------~~~fD 103 (272)
.+.+|||||||+|.-+.++++. +..+..-.|.++....-.+..+...++++-..-+..|+.+.+ . .++||
T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 3336999999999999999999 889999999999998888888888777644456677776653 1 35899
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccc--cCcchhhhhcccCCCCCCCHHHHHHHhhcC
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEY--RLSPGFIKEYIFPGGCLPSLGRVTSAMTSS 181 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 181 (272)
.|++.+++|-++.+....+++.+.++|++||.|++--+...+..+... ......++.. .|..-+...+++. .++++
T Consensus 105 ~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~r-dp~~GiRD~e~v~-~lA~~ 182 (204)
T PF06080_consen 105 AIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSR-DPEWGIRDIEDVE-ALAAA 182 (204)
T ss_pred eeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcC-CCCcCccCHHHHH-HHHHH
Confidence 999999999999888899999999999999999984333222211100 1111222221 3444566777765 67778
Q ss_pred CCcEEEEEEecCc
Q 024096 182 SGLCVEHLENIGI 194 (272)
Q Consensus 182 ~Gf~v~~~~~~~~ 194 (272)
+|+...+..++..
T Consensus 183 ~GL~l~~~~~MPA 195 (204)
T PF06080_consen 183 HGLELEEDIDMPA 195 (204)
T ss_pred CCCccCcccccCC
Confidence 9999887766643
|
The function of this family is unknown. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=108.25 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=88.8
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CCCCc
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------KANKY 102 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~~~~f 102 (272)
..++.+|||+|||+|..+..++.. .+.+++++|++++.++.|+++++.+|+.++++++.+|+.+.. +.++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 446789999999999999988876 357999999999999999999999999889999999987642 14689
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
|+|++... ......+++.+.+.|+|||.+++....
T Consensus 146 D~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 146 DFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 99998532 234568899999999999999886544
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-12 Score=108.07 Aligned_cols=101 Identities=16% Similarity=0.213 Sum_probs=81.9
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272)
.++.+|||+|||+|.++..++.+ .+.+++++|+++.+++.++++. +++.++++|+.+...+.+||+|+++..+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~~kFDlIIsNPPF 136 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESNEKFDVVISNPPF 136 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcccCCCcEEEEcCCc
Confidence 34579999999999999988876 4679999999999999998763 3689999999887755789999999999
Q ss_pred hccChhh------------------HHHHHHHHHhcCccCcEEEEE
Q 024096 112 EHVGHDY------------------MEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 112 ~~~~~~~------------------~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.|.+..+ ...+++....+|+|+|.+.+.
T Consensus 137 ~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 137 GKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 8864432 235667778889999977663
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=104.23 Aligned_cols=123 Identities=26% Similarity=0.404 Sum_probs=98.9
Q ss_pred CCHHHHHHHHHHHHHHHcCCCC--CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 024096 13 EDLEVGQMRKVSVLIEKARVSK--GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90 (272)
Q Consensus 13 ~~l~~aq~~~~~~l~~~l~~~~--~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~ 90 (272)
..+-..|.++....++.+.++. +.-|||||||+|..+..+.+. |..++|+|+|+.|++.|.+.--+ -.++.
T Consensus 27 sri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~e------gdlil 99 (270)
T KOG1541|consen 27 SRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVERELE------GDLIL 99 (270)
T ss_pred ceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhhh------cCeee
Confidence 3455788888889999888776 789999999999999988875 78999999999999999873211 25677
Q ss_pred cccCC-CC-CCCCccEEEEechhhcc---------ChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 91 CDYRQ-LP-KANKYDRIISCGMIEHV---------GHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 91 ~d~~~-~~-~~~~fD~V~~~~~~~~~---------~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+|+-+ +| .++.||.+++..++.++ |.+.+..|+..++..|++|++.+++-+.
T Consensus 100 ~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 100 CDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred eecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 78644 55 67899999999887655 4445567899999999999999997554
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.9e-12 Score=105.31 Aligned_cols=112 Identities=17% Similarity=0.198 Sum_probs=84.5
Q ss_pred HHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---C
Q 024096 24 SVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---K 98 (272)
Q Consensus 24 ~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~ 98 (272)
+.++..+. ..++.+|||+|||+|.++..+++. ++.+++++|+|+.+++.+++++..++ ++++++|+.+.. .
T Consensus 75 ~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~ 150 (251)
T TIGR03704 75 DEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTAL 150 (251)
T ss_pred HHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhc
Confidence 44444443 223468999999999999999887 67799999999999999999998764 478999986532 1
Q ss_pred CCCccEEEEechhh------ccCh------------------hhHHHHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIE------HVGH------------------DYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~------~~~~------------------~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.++||+|+++.... .+++ +....+++.+.++|+|||++++.
T Consensus 151 ~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 151 RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 35799999986432 1111 11357888888999999999984
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8e-12 Score=106.32 Aligned_cols=101 Identities=24% Similarity=0.413 Sum_probs=82.1
Q ss_pred EEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhc--
Q 024096 37 EVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH-- 113 (272)
Q Consensus 37 ~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~-- 113 (272)
+|||+|||+|.++..++.+ +.++|+|+|+|+..++.|++|+..+++ .++.++.+|+.+.-. ++||+|+++...--
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~-~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLR-GKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccC-CceeEEEeCCCCCCCc
Confidence 8999999999999999998 667999999999999999999999998 577777777554332 49999999963211
Q ss_pred ---c------------------ChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 114 ---V------------------GHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 114 ---~------------------~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
. +.+....++.++.+.|+|||.+++.
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 1 1134466888899999999999884
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-12 Score=101.03 Aligned_cols=110 Identities=16% Similarity=0.237 Sum_probs=85.5
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANK 101 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~ 101 (272)
++.+++.+++.++.+|||+|||+|.++..++++ +.+++++|+++.+++.+++++... ++++++++|+.+.+ ++..
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~~~~~ 77 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQ 77 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCccccC
Confidence 356888888889999999999999999999997 789999999999999999887542 48999999999987 4456
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
||.|+++...+ +..+....+++. ..+.++|.++++
T Consensus 78 ~d~vi~n~Py~-~~~~~i~~~l~~--~~~~~~~~l~~q 112 (169)
T smart00650 78 PYKVVGNLPYN-ISTPILFKLLEE--PPAFRDAVLMVQ 112 (169)
T ss_pred CCEEEECCCcc-cHHHHHHHHHhc--CCCcceEEEEEE
Confidence 99999976654 322323333332 124578888775
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=109.76 Aligned_cols=110 Identities=21% Similarity=0.292 Sum_probs=86.3
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEec
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCG 109 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~ 109 (272)
.++.+|||||||.|.++..+++. ++.+++++|+++.+++.|++++...+..++++++++|+.+.- ..++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45679999999999999999887 788999999999999999998765544468999999986543 346899999863
Q ss_pred hh-hccCh-hhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 110 MI-EHVGH-DYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 110 ~~-~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
.- ..++. -....+++++.+.|+|||++++..+.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 11 11111 11268999999999999999985443
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=112.59 Aligned_cols=113 Identities=19% Similarity=0.331 Sum_probs=90.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272)
...++.+++.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++..+++. +++++++|+.+..
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTD 360 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhh
Confidence 345677778888788899999999999999999986 579999999999999999999988874 7999999986532
Q ss_pred ---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 98 ---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 98 ---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
.+++||+|+++..-.-. ...++.+.+ ++|++.++++.
T Consensus 361 ~~~~~~~fD~Vi~dPPr~g~-----~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRAGA-----AEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhhhcCCCCEEEECcCCcCh-----HHHHHHHHh-cCCCeEEEEEe
Confidence 24679999997654332 345555555 68999998864
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.4e-12 Score=90.29 Aligned_cols=101 Identities=31% Similarity=0.510 Sum_probs=84.9
Q ss_pred EEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEechhhcc
Q 024096 37 EVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGMIEHV 114 (272)
Q Consensus 37 ~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~~~~~ 114 (272)
+|+|+|||.|..+..+++....+++++|+++..++.+++.....+ ..++.++.+|+.+.. ..++||+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999887556799999999999999986443333 357899999988876 45789999999999884
Q ss_pred ChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 115 GHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 115 ~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+....+++.+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 256789999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=100.72 Aligned_cols=110 Identities=24% Similarity=0.302 Sum_probs=92.8
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-cccCCCC---CCCCccE
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL-CDYRQLP---KANKYDR 104 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~-~d~~~~~---~~~~fD~ 104 (272)
...++.+|||||++.|..+.+++.. + +.+++.+|++++..+.|++++++.|+.+++..+. +|..+.- ..++||+
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 3457789999999999999999998 5 6799999999999999999999999988899988 5765544 3589999
Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
|+... ...+.+.+++.+.++|+|||.+++.....+.
T Consensus 136 iFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 136 VFIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred EEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 99852 2345689999999999999999987666543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=117.65 Aligned_cols=107 Identities=19% Similarity=0.156 Sum_probs=86.7
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC--CCCCccEEEEech
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYRQLP--KANKYDRIISCGM 110 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~--~~~~fD~V~~~~~ 110 (272)
++.+|||+|||+|.++..+++....+|+++|+|+.+++.+++++..+++. ++++++++|+.+.. ..++||+|++...
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 57899999999999999999863347999999999999999999999985 58999999986643 2468999999754
Q ss_pred hhcc---------ChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 111 IEHV---------GHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 111 ~~~~---------~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
..-- ..++...++..+.++|+|||.+++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 2110 11345678889999999999998753
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.8e-12 Score=107.21 Aligned_cols=107 Identities=22% Similarity=0.304 Sum_probs=84.4
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--C--CCCeEEEEcccCCCC--CCCCccEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAG--L--QDHIRFYLCDYRQLP--KANKYDRI 105 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g--~--~~~i~~~~~d~~~~~--~~~~fD~V 105 (272)
..+.+||+||||.|..+..++++ ...+|+++|+++.+++.+++.+...+ . .++++++.+|..+.- ..++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45679999999999999999887 44689999999999999999886431 1 458999999987654 45789999
Q ss_pred EEechhhccChh--hHHHHHHHHHhcCccCcEEEEE
Q 024096 106 ISCGMIEHVGHD--YMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 106 ~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
++...-.+.+.. ...++++.+.+.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 996533322211 1267899999999999999875
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-11 Score=98.22 Aligned_cols=122 Identities=20% Similarity=0.260 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 024096 14 DLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC 91 (272)
Q Consensus 14 ~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~ 91 (272)
.+...+-..+..+++.. ...+||||||++|..+.++++. .+.+++.+|++++..+.|+++++..|+.++|+++.+
T Consensus 28 ~i~~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g 104 (205)
T PF01596_consen 28 SISPETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG 104 (205)
T ss_dssp SHHHHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES
T ss_pred ccCHHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 45556666666666654 3569999999999999999987 368999999999999999999999999889999999
Q ss_pred ccCCCC-------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 92 DYRQLP-------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 92 d~~~~~-------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
|+.+.- ..++||+|+.... ..+...+++.+.++|+|||.+++.+...
T Consensus 105 da~~~l~~l~~~~~~~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp -HHHHHHHHHHTTTTTSEEEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred ccHhhHHHHHhccCCCceeEEEEccc-----ccchhhHHHHHhhhccCCeEEEEccccc
Confidence 987632 1358999998642 3456789999999999999999865543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-11 Score=104.33 Aligned_cols=110 Identities=22% Similarity=0.307 Sum_probs=83.6
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KAN 100 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~ 100 (272)
++.+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++++.+++ ++++++++|+.+.. ..+
T Consensus 162 ~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~ 239 (315)
T PRK03522 162 YATARDWVRELPPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGE 239 (315)
T ss_pred HHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCC
Confidence 344444444345689999999999999999985 78999999999999999999999998 58999999998764 335
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.||+|+++..-.-+. ..+++.+ ..++|++.++++
T Consensus 240 ~~D~Vv~dPPr~G~~----~~~~~~l-~~~~~~~ivyvs 273 (315)
T PRK03522 240 VPDLVLVNPPRRGIG----KELCDYL-SQMAPRFILYSS 273 (315)
T ss_pred CCeEEEECCCCCCcc----HHHHHHH-HHcCCCeEEEEE
Confidence 799999986533221 2333333 336788877775
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=99.15 Aligned_cols=106 Identities=21% Similarity=0.324 Sum_probs=77.5
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 024096 23 VSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272)
Q Consensus 23 ~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272)
+..+.+++. +.++.+|||+|||+|.++..+++. ...+++++|+++.+ .. .++.++++|+.+.+
T Consensus 20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~ 87 (188)
T TIGR00438 20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVL 87 (188)
T ss_pred HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHH
Confidence 334445443 578999999999999999988876 34689999999854 12 36788999987642
Q ss_pred -------CCCCccEEEEechh--------hccC-hhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 98 -------KANKYDRIISCGMI--------EHVG-HDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 98 -------~~~~fD~V~~~~~~--------~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+.++||+|++..+. .|.. .+....+++++.++|+|||++++..
T Consensus 88 ~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 88 NKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 34689999986432 2210 1224678999999999999999853
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-12 Score=102.84 Aligned_cols=106 Identities=19% Similarity=0.185 Sum_probs=79.2
Q ss_pred CCCCC-EEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEec
Q 024096 32 VSKGQ-EVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCG 109 (272)
Q Consensus 32 ~~~~~-~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~ 109 (272)
..++. .++|+|||+|..++-++.. -.+|+|+|+|+.|++.+++.....-..........+..++. .+++.|+|++..
T Consensus 30 ~~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 30 RTEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred hCCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhh
Confidence 34443 8999999999888888876 56999999999999999876433322112233333444444 578999999999
Q ss_pred hhhccChhhHHHHHHHHHhcCccCc-EEEEEee
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHG-LLVLQFI 141 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG-~l~i~~~ 141 (272)
++|++ +++.+.+++.|+||+.| .+.+..+
T Consensus 109 a~HWF---dle~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 109 AVHWF---DLERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hHHhh---chHHHHHHHHHHcCCCCCEEEEEEc
Confidence 99998 56899999999999887 5555433
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-11 Score=101.91 Aligned_cols=107 Identities=11% Similarity=0.134 Sum_probs=90.3
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CCCCc
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------KANKY 102 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~~~~f 102 (272)
..++.+||||||++|..+.++++. .+.+++++|.+++..+.|++++++.|+.++++++.+|+.+.. ..++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 345779999999999999999986 356899999999999999999999999889999999986632 13689
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
|+|+.... ......+++.+.++|+|||.+++.+...
T Consensus 196 D~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 196 DFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 99998632 3456889999999999999999865543
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.31 E-value=5e-11 Score=97.94 Aligned_cols=144 Identities=18% Similarity=0.209 Sum_probs=96.1
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechhh
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIE 112 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~ 112 (272)
...++||||+|.|..+..++.. -.+|++.|.|+.|....+++ | .+++..+ +.. .+.+||+|.|.+++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g----~~vl~~~--~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----G----FTVLDID--DWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----C----CeEEehh--hhhccCCceEEEeehhhhh
Confidence 4578999999999999999886 55899999999997666553 3 3444333 233 346899999999999
Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccC-cchhhhhcccCCCC-C-CCHHHHHHHhhcCCCcEEEEE
Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRL-SPGFIKEYIFPGGC-L-PSLGRVTSAMTSSSGLCVEHL 189 (272)
Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~-~-~~~~~~~~~l~~~~Gf~v~~~ 189 (272)
.. .++..+++.+++.|+|+|+++++.+. |-..+-+... ....-.+.+.-.+. + ...+.+. .+.+.+||+++.+
T Consensus 163 Rc--~~P~~LL~~i~~~l~p~G~lilAvVl-P~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~-~v~~p~GF~v~~~ 238 (265)
T PF05219_consen 163 RC--DRPLTLLRDIRRALKPNGRLILAVVL-PFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLV-NVFEPAGFEVERW 238 (265)
T ss_pred cc--CCHHHHHHHHHHHhCCCCEEEEEEEe-cccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHH-HHHHhcCCEEEEE
Confidence 88 66799999999999999999985433 3222222211 00001111111111 1 1133455 4567899999988
Q ss_pred Eec
Q 024096 190 ENI 192 (272)
Q Consensus 190 ~~~ 192 (272)
...
T Consensus 239 tr~ 241 (265)
T PF05219_consen 239 TRL 241 (265)
T ss_pred ecc
Confidence 775
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-11 Score=106.43 Aligned_cols=109 Identities=22% Similarity=0.268 Sum_probs=80.0
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcC---------CCCCeEEEEcccCCCC-----C-
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAG---------LQDHIRFYLCDYRQLP-----K- 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g---------~~~~i~~~~~d~~~~~-----~- 98 (272)
++.+|||+|||-|+-...+....-..++|+|++...++.|+++.+... ..-...++.+|..... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 789999999999997777777645699999999999999999983211 1124577888865432 2
Q ss_pred -CCCccEEEEechhhcc--ChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 99 -ANKYDRIISCGMIEHV--GHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 99 -~~~fD~V~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
...||+|-+..++|+. +.+....+++++...|+|||+++.+.+.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 2599999999999997 3345577999999999999999986554
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.3e-11 Score=105.93 Aligned_cols=107 Identities=19% Similarity=0.135 Sum_probs=85.2
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC-----CCCCccEEEE
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYRQLP-----KANKYDRIIS 107 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~-----~~~~fD~V~~ 107 (272)
++.+|||+|||+|.++..++.....+|+++|+|+.+++.++++++.+++. ++++++++|+.+.. ..++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 57899999999999998776643449999999999999999999999985 47999999987753 2468999999
Q ss_pred echhhccCh-------hhHHHHHHHHHhcCccCcEEEEEe
Q 024096 108 CGMIEHVGH-------DYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 108 ~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
......-.. +....+++.+.++|+|||.++...
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 866432211 234556677889999999998744
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.6e-11 Score=96.01 Aligned_cols=114 Identities=14% Similarity=0.094 Sum_probs=85.3
Q ss_pred HHHHHHcC-CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC
Q 024096 24 SVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KAN 100 (272)
Q Consensus 24 ~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~ 100 (272)
+.+++.+. ..++.+|||+|||+|.++..++.+...+|+++|+++..++.++++++.+++. ++.++++|+.+.. ...
T Consensus 42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~ 120 (199)
T PRK10909 42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGT 120 (199)
T ss_pred HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCC
Confidence 33444443 2467899999999999998755554579999999999999999999998874 7999999986633 335
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHh--cCccCcEEEEEee
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCES--LLATHGLLVLQFI 141 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~ 141 (272)
+||+|+++..+.. .-....++.+.. +|+|++.++++..
T Consensus 121 ~fDlV~~DPPy~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 121 PHNVVFVDPPFRK---GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CceEEEECCCCCC---ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 7999999988532 122445555544 4899999998644
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=113.78 Aligned_cols=106 Identities=22% Similarity=0.381 Sum_probs=83.4
Q ss_pred CCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC---------------CCeEEEEcccCCCCC
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQ---------------DHIRFYLCDYRQLPK 98 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~---------------~~i~~~~~d~~~~~~ 98 (272)
+.+|||+|||+|.+++.+++. +..+++++|+|+.+++.|++|+..+++. ++++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 569999999999999999987 5689999999999999999999886532 479999999876542
Q ss_pred C--CCccEEEEechhh------ccC------------------------------hhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 99 A--NKYDRIISCGMIE------HVG------------------------------HDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 99 ~--~~fD~V~~~~~~~------~~~------------------------------~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+ .+||+|+++..-- .+. -.....+++++.++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2 3699999986411 110 0112567888889999999999853
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.9e-11 Score=98.08 Aligned_cols=96 Identities=14% Similarity=0.154 Sum_probs=76.0
Q ss_pred CCCEEEEECCCchHHHHHHHHc----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEec
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ----TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCG 109 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~----~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~ 109 (272)
.+.+|||+|||+|.++..++++ ...+|+++|+++.+++.|+++. .++.++++|+...+.+++||+|+++.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEFDTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccccCCccEEEECC
Confidence 3679999999999999998875 2469999999999999999774 25789999998766557999999998
Q ss_pred hhhccC----------hhhHHHHHHHHHhcCccCcE
Q 024096 110 MIEHVG----------HDYMEEFFGCCESLLATHGL 135 (272)
Q Consensus 110 ~~~~~~----------~~~~~~~l~~~~~~LkpgG~ 135 (272)
.+.-.. ......+++.+.+++++|+.
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 776332 12245688888887766664
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.2e-11 Score=95.40 Aligned_cols=133 Identities=19% Similarity=0.284 Sum_probs=86.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchH----HHHHHHHc----c--CCEEEEEcCCHHHHHHHHHH
Q 024096 7 IFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGT----LAIEIVKQ----T--GCKYTGITLSEEQLKYAEIK 76 (272)
Q Consensus 7 ~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~----~~~~l~~~----~--~~~v~gvd~s~~~~~~a~~~ 76 (272)
+|-.+.+.++..+...+..+++.....+.-+|+..||++|. +++.+.+. . ..+|+|+|+|+..++.|++-
T Consensus 4 ~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 4 YFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp -TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 45566667777777777666665554566899999999994 55555551 1 36999999999999999872
Q ss_pred H--------------HH-----c--------CCCCCeEEEEcccCC-CCCCCCccEEEEechhhccChhhHHHHHHHHHh
Q 024096 77 V--------------RE-----A--------GLQDHIRFYLCDYRQ-LPKANKYDRIISCGMIEHVGHDYMEEFFGCCES 128 (272)
Q Consensus 77 ~--------------~~-----~--------g~~~~i~~~~~d~~~-~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~ 128 (272)
. .+ . .+.++|.|.+.|+.+ .+..+.||+|+|.+++-++..+....+++++++
T Consensus 84 ~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~ 163 (196)
T PF01739_consen 84 IYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHR 163 (196)
T ss_dssp EEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGG
T ss_pred CCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHH
Confidence 1 00 0 122479999999988 446689999999999999998888999999999
Q ss_pred cCccCcEEEEE
Q 024096 129 LLATHGLLVLQ 139 (272)
Q Consensus 129 ~LkpgG~l~i~ 139 (272)
.|+|||+|++.
T Consensus 164 ~L~pgG~L~lG 174 (196)
T PF01739_consen 164 SLKPGGYLFLG 174 (196)
T ss_dssp GEEEEEEEEE-
T ss_pred HcCCCCEEEEe
Confidence 99999999983
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.3e-11 Score=102.96 Aligned_cols=107 Identities=17% Similarity=0.227 Sum_probs=83.8
Q ss_pred CCCCEEEEECCCchHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEcccCCCC---CCCCccEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREA--GL-QDHIRFYLCDYRQLP---KANKYDRI 105 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~--g~-~~~i~~~~~d~~~~~---~~~~fD~V 105 (272)
..+.+||+||||.|..+..+++.++ .+|+.+|+++.+++.+++.+... ++ .++++++.+|....- +.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 5678999999999999999998844 68999999999999999987643 22 358999999975542 24689999
Q ss_pred EEechhhccChh--hHHHHHHHHHhcCccCcEEEEE
Q 024096 106 ISCGMIEHVGHD--YMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 106 ~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
++...-.+.+.. ....+++.+.+.|+|||.++.+
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 996543322211 1257899999999999999874
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.2e-11 Score=96.11 Aligned_cols=104 Identities=27% Similarity=0.385 Sum_probs=83.2
Q ss_pred CCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEEEec
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRIISCG 109 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V~~~~ 109 (272)
...+||||||.|.+...+|+. ++..++|+|+....+..+..++...++ .|+.++++|+..+- +++++|.|+...
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 348999999999999999998 999999999999999999999999888 49999999988832 568999999987
Q ss_pred hhhccChhh------HHHHHHHHHhcCccCcEEEEE
Q 024096 110 MIEHVGHDY------MEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 110 ~~~~~~~~~------~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.-.|.-.+. ...+++.+.++|+|||.+.+.
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 665542211 257999999999999999884
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-10 Score=101.79 Aligned_cols=110 Identities=16% Similarity=0.242 Sum_probs=85.7
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANK 101 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~ 101 (272)
+.+.+.+...++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|+++++.+++. +++++++|+.+.. ...+
T Consensus 223 ~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~ 300 (374)
T TIGR02085 223 ATARQWVREIPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSA 300 (374)
T ss_pred HHHHHHHHhcCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCC
Confidence 33444444345679999999999999999975 689999999999999999999999884 8999999987654 2246
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
||+|++...-..+. ..+++.+. .++|++.++++.
T Consensus 301 ~D~vi~DPPr~G~~----~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 301 PELVLVNPPRRGIG----KELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCEEEECCCCCCCc----HHHHHHHH-hcCCCeEEEEEe
Confidence 99999988755442 34555554 368999888853
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=104.53 Aligned_cols=114 Identities=17% Similarity=0.234 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
....++.+.+.+...++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++..+++ ++++++.+|+.+..
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHH
Confidence 3344566777777778899999999999999999986 56999999999999999999999887 48999999987532
Q ss_pred ----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 ----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
...+||+|+....-..+. ..+++.+.+ ++|++.++++
T Consensus 355 ~~~~~~~~~D~vi~dPPr~G~~----~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRKGCA----AEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHhcCCCCCEEEECcCCCCCC----HHHHHHHHh-cCCCEEEEEc
Confidence 235799999876533221 455555554 7898887774
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=98.21 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=82.4
Q ss_pred CCCCEEEEECCCchHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEcccCCCC--CCCCccEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREAG--L-QDHIRFYLCDYRQLP--KANKYDRII 106 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~g--~-~~~i~~~~~d~~~~~--~~~~fD~V~ 106 (272)
+.+.+||+||||+|.++..+++.. ..+++++|+++.+++.+++.+...+ . .++++++.+|..+.- ..++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 445699999999999999988873 5689999999999999999875432 1 247888888876532 347899999
Q ss_pred EechhhccChhh--HHHHHHHHHhcCccCcEEEEE
Q 024096 107 SCGMIEHVGHDY--MEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 107 ~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+......-+... ..++++.+.+.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 976532222122 368899999999999999985
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.5e-11 Score=106.33 Aligned_cols=103 Identities=19% Similarity=0.318 Sum_probs=80.8
Q ss_pred CCEEEEECCCchHHHHHHHHcc-----CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEec
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQT-----GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCG 109 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~-----~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~ 109 (272)
+..|||+|||+|.++...++.. ..+|+++|.++..+...++.++.+++.++|+++++|+++...++++|+|+|-.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 5789999999999998776652 36999999999999888888788899899999999999999667999999976
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
+-.....+-.++.+....+.|||||.++
T Consensus 267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 5433333455778888999999999876
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-10 Score=95.85 Aligned_cols=105 Identities=13% Similarity=0.147 Sum_probs=88.8
Q ss_pred CCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----C----CCCc
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----K----ANKY 102 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~----~~~f 102 (272)
....+|||||+++|..+.++++. .+.+++.+|.+++..+.|+++++..|+.++|+++.+|+.+.- . .++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 35679999999999999999986 467999999999999999999999999899999999986642 1 2689
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
|+|+...- ......+++.+.++|+|||.+++.+..
T Consensus 158 D~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 158 DFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred cEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 99998632 345678899999999999999885444
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.6e-11 Score=100.14 Aligned_cols=106 Identities=25% Similarity=0.321 Sum_probs=86.0
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEec
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCG 109 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~ 109 (272)
.+-.+..|||+|||+|.++.+.|+....+|+++|.|. +++.|++.++.+++.+.++++.+.++++. |.++.|+|+|.+
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 3567899999999999999999998556899999765 55999999999999888999999999987 569999999987
Q ss_pred hhhccChhhH-HHHHHHHHhcCccCcEEE
Q 024096 110 MIEHVGHDYM-EEFFGCCESLLATHGLLV 137 (272)
Q Consensus 110 ~~~~~~~~~~-~~~l~~~~~~LkpgG~l~ 137 (272)
+-..+-.+.+ ..++-.=-+.|+|||.++
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 7665532322 233333358999999886
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.1e-10 Score=89.98 Aligned_cols=122 Identities=17% Similarity=0.312 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHH------cCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--CCCCeEE
Q 024096 18 GQMRKVSVLIEK------ARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAG--LQDHIRF 88 (272)
Q Consensus 18 aq~~~~~~l~~~------l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g--~~~~i~~ 88 (272)
+.....+++.+. .....+.+|||+|||+|..++.++.. ...+|+..|.++ .++..+.+++.++ ...++.+
T Consensus 23 aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v 101 (173)
T PF10294_consen 23 AALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSV 101 (173)
T ss_dssp HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EE
T ss_pred hHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccC
Confidence 334444555553 33567889999999999999999987 678999999998 9999999999877 5568899
Q ss_pred EEcccCCCC-----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 89 YLCDYRQLP-----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 89 ~~~d~~~~~-----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
...|+.+.. ...+||+|+...+++.- +..+.+++.+.++|+|+|.+++....
T Consensus 102 ~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 102 RPLDWGDELDSDLLEPHSFDVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EE--TTS-HHHHHHS-SSBSEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred cEEEecCcccccccccccCCEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 998876522 34689999999999975 67789999999999999997775443
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-10 Score=91.15 Aligned_cols=127 Identities=19% Similarity=0.310 Sum_probs=83.0
Q ss_pred HHHHHHHHcCCCC-CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CC
Q 024096 22 KVSVLIEKARVSK-GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KA 99 (272)
Q Consensus 22 ~~~~l~~~l~~~~-~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~ 99 (272)
-++.+++.+.-.+ +..|-|+|||.+.++..+. .+.+|..+|+-+ .+-.+..+|+..+| ++
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva----------------~n~~Vtacdia~vPL~~ 120 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVA----------------PNPRVTACDIANVPLED 120 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH----S---EEEEESS-----------------SSTTEEES-TTS-S--T
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc--cCceEEEeeccC----------------CCCCEEEecCccCcCCC
Confidence 3467788877544 5799999999999986543 246899999854 23357889999999 88
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhh
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMT 179 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~ 179 (272)
++.|+++.+.++..- +...++++..|+|||||.+.|.++.. ++.......+.+
T Consensus 121 ~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~S-----------------------Rf~~~~~F~~~~- 173 (219)
T PF05148_consen 121 ESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIAEVKS-----------------------RFENVKQFIKAL- 173 (219)
T ss_dssp T-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGG-----------------------G-S-HHHHHHHH-
T ss_pred CceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEEEecc-----------------------cCcCHHHHHHHH-
Confidence 999999998887764 67899999999999999999987751 234566676554
Q ss_pred cCCCcEEEEEEecC
Q 024096 180 SSSGLCVEHLENIG 193 (272)
Q Consensus 180 ~~~Gf~v~~~~~~~ 193 (272)
+..||.+...+...
T Consensus 174 ~~~GF~~~~~d~~n 187 (219)
T PF05148_consen 174 KKLGFKLKSKDESN 187 (219)
T ss_dssp HCTTEEEEEEE--S
T ss_pred HHCCCeEEecccCC
Confidence 46999998765433
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-10 Score=106.78 Aligned_cols=108 Identities=26% Similarity=0.232 Sum_probs=83.0
Q ss_pred CCCCEEEEECCCchHHHHHHHHccC-CEEEEEcCCHHHHHHHHHH--HHH---cCC-CCCeEEEEcccCCCC--CCCCcc
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIK--VRE---AGL-QDHIRFYLCDYRQLP--KANKYD 103 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~--~~~---~g~-~~~i~~~~~d~~~~~--~~~~fD 103 (272)
+++.+|||+|||+|..+..+++++. .+++++|+++++++.++++ ... ... .++++++.+|..+.. .+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4568999999999999999988754 7999999999999999983 221 112 258999999987743 357999
Q ss_pred EEEEechhhccCh---hhHHHHHHHHHhcCccCcEEEEEe
Q 024096 104 RIISCGMIEHVGH---DYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 104 ~V~~~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+|++.......+. -...++++.+.+.|||||.++++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9999854332211 112468999999999999999853
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-10 Score=99.32 Aligned_cols=108 Identities=22% Similarity=0.275 Sum_probs=81.6
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHH-----HHcCC-CCCeEEEEcccCCCC--CCCCc
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKV-----REAGL-QDHIRFYLCDYRQLP--KANKY 102 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~-----~~~g~-~~~i~~~~~d~~~~~--~~~~f 102 (272)
.....+||++|||.|..+..+.+. +..+|+++|+++.+++.|++.. ....+ .++++++.+|..+.. ..++|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 345579999999999999988887 3479999999999999999621 11122 368999999988753 45789
Q ss_pred cEEEEechhh---ccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 103 DRIISCGMIE---HVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 103 D~V~~~~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
|+|++...-. ....-.-.++++.+.+.|+|||++++.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999974211 111112267999999999999999875
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.6e-10 Score=96.24 Aligned_cols=82 Identities=23% Similarity=0.340 Sum_probs=67.4
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEE-cccCCCC-----CCCCccEE
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA-GLQDHIRFYL-CDYRQLP-----KANKYDRI 105 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~-g~~~~i~~~~-~d~~~~~-----~~~~fD~V 105 (272)
++.+|||||||+|.+...++.+ ++.+++|+|+++.+++.|++++..+ ++.+++.++. .|...+. +.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 5689999999999888888776 7899999999999999999999999 7888888864 3332222 35689999
Q ss_pred EEechhhccC
Q 024096 106 ISCGMIEHVG 115 (272)
Q Consensus 106 ~~~~~~~~~~ 115 (272)
+|+..++.-.
T Consensus 194 vcNPPf~~s~ 203 (321)
T PRK11727 194 LCNPPFHASA 203 (321)
T ss_pred EeCCCCcCcc
Confidence 9999887543
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.1e-10 Score=90.95 Aligned_cols=105 Identities=27% Similarity=0.487 Sum_probs=78.3
Q ss_pred CCCCEEEEECCCchHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHc-------------------------------
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREA------------------------------- 80 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~------------------------------- 80 (272)
..+..+|||||..|.++..+++..+ ..+.|+||++..+..|+++++..
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3567999999999999999999844 47999999999999999987532
Q ss_pred ---CCCCCeEEE-------EcccCCCCCCCCccEEEEechhhcc----ChhhHHHHHHHHHhcCccCcEEEE
Q 024096 81 ---GLQDHIRFY-------LCDYRQLPKANKYDRIISCGMIEHV----GHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 81 ---g~~~~i~~~-------~~d~~~~~~~~~fD~V~~~~~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
..++++.+. ..|+.+. ....||+|+|..+..++ +|+-+..++++++++|.|||++++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 011122222 2222211 34689999987654433 667789999999999999999998
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.4e-10 Score=95.44 Aligned_cols=105 Identities=24% Similarity=0.232 Sum_probs=88.1
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272)
...+..|||+|||+|.++.+.++....+|+++|. .+|.++|++.+..+.+.++|.++.|-++++..+++.|+|++..+-
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG 253 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMG 253 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccch
Confidence 3467899999999999999999986679999996 569999999999999999999999999999877999999998765
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEE
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
..+-.+...+-.-..++.|||.|..+
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 55544444444445679999999987
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.4e-10 Score=92.97 Aligned_cols=103 Identities=23% Similarity=0.304 Sum_probs=88.9
Q ss_pred CEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEEEech
Q 024096 36 QEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRIISCGM 110 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V~~~~~ 110 (272)
..+||||||.|.....+|++ |...++|+|+....+..+.+.+.+.++. |+.+++.|+..+- ++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 58999999999999999999 8899999999999999999999999986 9999999987754 4559999999877
Q ss_pred hhccChh------hHHHHHHHHHhcCccCcEEEEE
Q 024096 111 IEHVGHD------YMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 111 ~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
-.|--.+ -.+.+++.+.+.|+|||.+.+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 6554111 1257999999999999999984
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-09 Score=92.28 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=112.6
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhc
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH 113 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~ 113 (272)
.-...+|+|.|.|..+..+... -.++-+++++...+..+...+. . .|+.+-+|+.+-- .+-|+||..+++||
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~~--P~~daI~mkWiLhd 248 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQDT--PKGDAIWMKWILHD 248 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C----CcceecccccccC--CCcCeEEEEeeccc
Confidence 3489999999999999999886 3458888888887777766653 2 3788888865543 24469999999999
Q ss_pred cChhhHHHHHHHHHhcCccCcEEEEEeecCCC-Cccccc----cCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEE
Q 024096 114 VGHDYMEEFFGCCESLLATHGLLVLQFISAPD-QCYDEY----RLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEH 188 (272)
Q Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~~~----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~ 188 (272)
++|++...++++|+..|+|||.+++.+...+. ...... ....+.+.....++|--.+..++. .++.++||.+..
T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q-~l~~~~gF~~~~ 327 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQ-ALLPEEGFPVCM 327 (342)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHH-hcchhhcCceeE
Confidence 99999999999999999999999999887765 222211 111122223333444445666665 566679999888
Q ss_pred EEecCccHH
Q 024096 189 LENIGIHYY 197 (272)
Q Consensus 189 ~~~~~~~~~ 197 (272)
+-....+|.
T Consensus 328 ~~~~~~~~~ 336 (342)
T KOG3178|consen 328 VALTAYSYS 336 (342)
T ss_pred EEeccCccc
Confidence 777666554
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-10 Score=96.46 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA 99 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~ 99 (272)
...++.+++.+.+.++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++...+..++++++++|+.+.+.
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~- 99 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF- 99 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-
Confidence 455678888889899999999999999999999986 678999999999999999998876655689999999987663
Q ss_pred CCccEEEEechhhc
Q 024096 100 NKYDRIISCGMIEH 113 (272)
Q Consensus 100 ~~fD~V~~~~~~~~ 113 (272)
..||.|+++.....
T Consensus 100 ~~~d~VvaNlPY~I 113 (294)
T PTZ00338 100 PYFDVCVANVPYQI 113 (294)
T ss_pred cccCEEEecCCccc
Confidence 36899998765443
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-09 Score=88.33 Aligned_cols=112 Identities=21% Similarity=0.313 Sum_probs=87.4
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------CCCCccE
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------KANKYDR 104 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------~~~~fD~ 104 (272)
...+..+||+|||+|..+..++.. +.++++++|.|+.++..|.+|+..+++.+++.+++-+++.-. ..+++|+
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence 345568999999999999999887 889999999999999999999999999999999866554322 4579999
Q ss_pred EEEechhhcc------------------------ChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 105 IISCGMIEHV------------------------GHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 105 V~~~~~~~~~------------------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
++++...--- +.+....++.-+.|+|+|||.+.+.....
T Consensus 226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 9998642110 11233446666789999999999865543
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=85.66 Aligned_cols=81 Identities=23% Similarity=0.354 Sum_probs=68.7
Q ss_pred HcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEe
Q 024096 29 KARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISC 108 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~ 108 (272)
..+.-.|.+|+|+|||+|.++.-.+-....+|+|+|++++.++.+++|..+. ..++.++++|+.+.. ..+|.|+.+
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~~--~~~dtvimN 115 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDFR--GKFDTVIMN 115 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhcC--CccceEEEC
Confidence 3344567899999999999999888764479999999999999999999883 368999999999987 778999998
Q ss_pred chhhc
Q 024096 109 GMIEH 113 (272)
Q Consensus 109 ~~~~~ 113 (272)
..+--
T Consensus 116 PPFG~ 120 (198)
T COG2263 116 PPFGS 120 (198)
T ss_pred CCCcc
Confidence 87653
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.8e-10 Score=91.95 Aligned_cols=123 Identities=22% Similarity=0.365 Sum_probs=95.4
Q ss_pred HHHHHHcCCCC-CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC
Q 024096 24 SVLIEKARVSK-GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANK 101 (272)
Q Consensus 24 ~~l~~~l~~~~-~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~ 101 (272)
+.+++.+...+ ...|-|+|||-+.++. .. ..+|+.+|+-+ .+-+++.+|+.++| ++++
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~d~s 228 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA----------------VNERVIACDMRNVPLEDES 228 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh---cc-ccceeeeeeec----------------CCCceeeccccCCcCccCc
Confidence 67777777544 4689999999988765 22 45899999743 25588999999999 8899
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcC
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSS 181 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 181 (272)
.|+++.+.++.. .++..+++++.|+|+|||.++|.++. +.+++...+.+.+. .
T Consensus 229 vDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~-----------------------SRf~dv~~f~r~l~-~ 281 (325)
T KOG3045|consen 229 VDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVK-----------------------SRFSDVKGFVRALT-K 281 (325)
T ss_pred ccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehh-----------------------hhcccHHHHHHHHH-H
Confidence 999998877665 46789999999999999999997665 23456666776655 5
Q ss_pred CCcEEEEEEecC
Q 024096 182 SGLCVEHLENIG 193 (272)
Q Consensus 182 ~Gf~v~~~~~~~ 193 (272)
.||.+.+.....
T Consensus 282 lGF~~~~~d~~n 293 (325)
T KOG3045|consen 282 LGFDVKHKDVSN 293 (325)
T ss_pred cCCeeeehhhhc
Confidence 999988765543
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-09 Score=89.19 Aligned_cols=107 Identities=18% Similarity=0.197 Sum_probs=92.2
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TG--CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRI 105 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~--~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V 105 (272)
...-+||||.||.|......... +. ..|...|.|+..++..++.++..|+.+-++|.++|+.+.. .....+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35579999999999987776665 44 6899999999999999999999999877799999987754 24568999
Q ss_pred EEechhhccChhh-HHHHHHHHHhcCccCcEEEEE
Q 024096 106 ISCGMIEHVGHDY-MEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 106 ~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~ 139 (272)
++++.++.+++++ ....++.+.+.+.|||+++.+
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 9999999999876 456799999999999999984
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.9e-10 Score=97.38 Aligned_cols=122 Identities=25% Similarity=0.261 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccC
Q 024096 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYR 94 (272)
Q Consensus 17 ~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~ 94 (272)
.-|+..-..+-+.+. |++|||+-|=||+++.+.+.. |+ +|++||+|...+++|++|.+.||++ +++.++++|+.
T Consensus 203 lDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf 278 (393)
T COG1092 203 LDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF 278 (393)
T ss_pred HHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence 344444444444432 899999999999999999985 76 9999999999999999999999984 56899999987
Q ss_pred CCC-----CCCCccEEEEechhhcc-------ChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 95 QLP-----KANKYDRIISCGMIEHV-------GHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 95 ~~~-----~~~~fD~V~~~~~~~~~-------~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+.- ...+||+|+....-.-- ..++...++..+.++|+|||.+++++..
T Consensus 279 ~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 279 KWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred HHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 754 34699999997643221 1245677899999999999999986544
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-10 Score=94.16 Aligned_cols=107 Identities=20% Similarity=0.263 Sum_probs=83.9
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC-CC----CeEEEEcccCCC------C-CC
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL-QD----HIRFYLCDYRQL------P-KA 99 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~-~~----~i~~~~~d~~~~------~-~~ 99 (272)
.++++.++|+|||-|+-.+.+-+..-..++|+||+...++.|+++.+..-- .+ .+.|+.+|-... + .+
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 367889999999999988887776445899999999999999998865421 11 368888885432 2 23
Q ss_pred CCccEEEEechhhcc--ChhhHHHHHHHHHhcCccCcEEEE
Q 024096 100 NKYDRIISCGMIEHV--GHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.+||+|-|..++|+. +.+...-+++++.+.|+|||+++-
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 449999999998875 334567799999999999999986
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-09 Score=91.95 Aligned_cols=89 Identities=21% Similarity=0.274 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC
Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK 98 (272)
Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 98 (272)
..+.++.+++.+++.++.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++.. .+++.++++|+.+.+.
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDL 89 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCc
Confidence 3455678888888889999999999999999999997 67999999999999999988754 2489999999988773
Q ss_pred CCCccEEEEechhh
Q 024096 99 ANKYDRIISCGMIE 112 (272)
Q Consensus 99 ~~~fD~V~~~~~~~ 112 (272)
..||.|+++....
T Consensus 90 -~~~d~Vv~NlPy~ 102 (258)
T PRK14896 90 -PEFNKVVSNLPYQ 102 (258)
T ss_pred -hhceEEEEcCCcc
Confidence 2489999987654
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.3e-10 Score=90.64 Aligned_cols=100 Identities=25% Similarity=0.392 Sum_probs=76.3
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEech
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGM 110 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~ 110 (272)
..++.+|+|+.||.|.++..+++. .++.|+++|++|..++..+++++.+++.+++..+++|..++.....+|.|++...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 568999999999999999999985 5779999999999999999999999999899999999998877789999998653
Q ss_pred hhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 111 IEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
-.. ..++..+.+++++||.+.
T Consensus 179 ~~~------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ESS------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp SSG------GGGHHHHHHHEEEEEEEE
T ss_pred HHH------HHHHHHHHHHhcCCcEEE
Confidence 221 367888888999998875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=92.91 Aligned_cols=86 Identities=16% Similarity=0.246 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
...+.+++.+.+.++.+|||+|||+|.++..++++ +.+++|+|+++.+++.++++... ++++++++|+.+.+.++
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHH
Confidence 45677888888889999999999999999999997 45999999999999999887632 48999999999887322
Q ss_pred C-ccEEEEechh
Q 024096 101 K-YDRIISCGMI 111 (272)
Q Consensus 101 ~-fD~V~~~~~~ 111 (272)
. +|.|+++...
T Consensus 104 ~~~~~vv~NlPY 115 (272)
T PRK00274 104 LQPLKVVANLPY 115 (272)
T ss_pred cCcceEEEeCCc
Confidence 2 5888887653
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=87.51 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=81.0
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C---CC-CCccEEEEe
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P---KA-NKYDRIISC 108 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~---~~-~~fD~V~~~ 108 (272)
.+.+|||++||+|.++..++++...+|+++|.++..++.++++++.+++.++++++++|+.+. . .. ..||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 578999999999999999999833489999999999999999999998877899999998553 2 12 247888887
Q ss_pred chhhccChhhHHHHHHHHH--hcCccCcEEEEEe
Q 024096 109 GMIEHVGHDYMEEFFGCCE--SLLATHGLLVLQF 140 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~ 140 (272)
..+.. .....+++.+. .+|+++|.+++..
T Consensus 129 PPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 129 PPFFN---GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred cCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 76643 22344455443 4789999888753
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-09 Score=85.16 Aligned_cols=114 Identities=25% Similarity=0.374 Sum_probs=84.6
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCE---------EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCK---------YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~---------v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~ 93 (272)
..|+......++..|||.-||+|.+.+..+.. .+.. ++|.|+++.+++.+++|++..++...+.+.+.|+
T Consensus 18 ~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 18 AALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 45566667788999999999999999888776 4444 8999999999999999999999988899999999
Q ss_pred CCCC-CCCCccEEEEechhhcc-Ch-----hhHHHHHHHHHhcCccCcEEE
Q 024096 94 RQLP-KANKYDRIISCGMIEHV-GH-----DYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 94 ~~~~-~~~~fD~V~~~~~~~~~-~~-----~~~~~~l~~~~~~LkpgG~l~ 137 (272)
.+++ .++.+|.|+++...-.- +. +-...+++++.+++++...++
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 9999 77899999999765432 21 223567888999999943333
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-09 Score=96.11 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=94.4
Q ss_pred HHHc--CCCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC
Q 024096 27 IEKA--RVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KAN 100 (272)
Q Consensus 27 ~~~l--~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~ 100 (272)
...+ +..+|.+|||+++|.|+-+.++++.. ...++++|+++..+...++++++.|+. ++.+.+.|...+. ..+
T Consensus 104 ~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~ 182 (470)
T PRK11933 104 VAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPE 182 (470)
T ss_pred HHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchh
Confidence 3445 66899999999999999999999872 368999999999999999999999985 7899999988765 346
Q ss_pred CccEEEEechhh------c-------cCh-------hhHHHHHHHHHhcCccCcEEEEEeecCCCC
Q 024096 101 KYDRIISCGMIE------H-------VGH-------DYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272)
Q Consensus 101 ~fD~V~~~~~~~------~-------~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272)
.||.|+...... . +.. +-..++++++.++|||||+++.++.+....
T Consensus 183 ~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~e 248 (470)
T PRK11933 183 TFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNRE 248 (470)
T ss_pred hcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHH
Confidence 799999653221 1 111 112678999999999999999988876543
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-09 Score=91.31 Aligned_cols=115 Identities=25% Similarity=0.366 Sum_probs=93.1
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-ccCCCC-CCCC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-DYRQLP-KANK 101 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~~~-~~~~ 101 (272)
+.+++....++|..|||-=||||++.+...-. |++++|.|++..|++-++.|++..+++ ...+... |+..+| ++++
T Consensus 187 R~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~-G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lpl~~~~ 264 (347)
T COG1041 187 RAMVNLARVKRGELVLDPFCGTGGILIEAGLM-GARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLPLRDNS 264 (347)
T ss_pred HHHHHHhccccCCEeecCcCCccHHHHhhhhc-CceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCCCCCCc
Confidence 45556667889999999999999999987774 999999999999999999999998875 4555555 999999 5567
Q ss_pred ccEEEEechhhccC-------hhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 102 YDRIISCGMIEHVG-------HDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 102 fD~V~~~~~~~~~~-------~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+|.|++....--.. ++-..++++.++++|++||++++..
T Consensus 265 vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 265 VDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred cceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 99999976432211 1335789999999999999999843
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=4e-09 Score=88.90 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=76.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA 99 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~ 99 (272)
....+.+++.++..++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++... .++++++++|+.+.+..
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh
Confidence 345677888888888999999999999999999997 45799999999999999887643 25899999999988732
Q ss_pred CCcc---EEEEechhhccChhhHHHHHHHHHh
Q 024096 100 NKYD---RIISCGMIEHVGHDYMEEFFGCCES 128 (272)
Q Consensus 100 ~~fD---~V~~~~~~~~~~~~~~~~~l~~~~~ 128 (272)
.+| .|+++... |++ ..++.++..
T Consensus 91 -~~d~~~~vvsNlPy-~i~----~~il~~ll~ 116 (253)
T TIGR00755 91 -DFPKQLKVVSNLPY-NIS----SPLIFKLLE 116 (253)
T ss_pred -HcCCcceEEEcCCh-hhH----HHHHHHHhc
Confidence 456 77776543 332 345544443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=86.18 Aligned_cols=108 Identities=22% Similarity=0.281 Sum_probs=84.7
Q ss_pred HHHHHHcC--CCCCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcC--------C-CCCeEEE
Q 024096 24 SVLIEKAR--VSKGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAG--------L-QDHIRFY 89 (272)
Q Consensus 24 ~~l~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g--------~-~~~i~~~ 89 (272)
..+++.|. +.||.+.||+|+|+|.++..++.. ++..++|||.-++.++.+++++.+.- + ..++.++
T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237)
T ss_pred HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence 44555555 679999999999999999988866 34456999999999999999987642 1 2367899
Q ss_pred EcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 90 LCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 90 ~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
++|..... +..+||.|.+.... .+..+++...|++||++++-
T Consensus 150 vGDgr~g~~e~a~YDaIhvGAaa--------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 150 VGDGRKGYAEQAPYDAIHVGAAA--------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred eCCccccCCccCCcceEEEccCc--------cccHHHHHHhhccCCeEEEe
Confidence 99988877 56899999987332 34555667778999999983
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.9e-09 Score=80.63 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=98.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272)
..+.|...++...|..|||+|.|+|.++..+.++ ....++.+|.|++.....++.. +.+.++.+|+.++.
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~ 109 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTT 109 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhhHHHH
Confidence 3456777788889999999999999999999987 5568999999999998887764 46779999988765
Q ss_pred ----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 98 ----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 98 ----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
.+..||.|+|.-.+-.+|.....++++.+...|.+||.++--.+.
T Consensus 110 l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 110 LGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 456899999999999999888889999999999999999864444
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.5e-09 Score=85.13 Aligned_cols=107 Identities=20% Similarity=0.195 Sum_probs=90.9
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--- 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--- 97 (272)
+..++..|++.||.+|||-|+|+|+++..+++. +..+++.+|+.+...+.|++..+..|+++++.+.+.|+....
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 367888999999999999999999999999998 667999999999999999999999999999999999998876
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEE
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLL 136 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 136 (272)
.+..+|.|+.... .+...+..++.+||.+|.-
T Consensus 174 ks~~aDaVFLDlP-------aPw~AiPha~~~lk~~g~r 205 (314)
T KOG2915|consen 174 KSLKADAVFLDLP-------APWEAIPHAAKILKDEGGR 205 (314)
T ss_pred cccccceEEEcCC-------ChhhhhhhhHHHhhhcCce
Confidence 3578999998643 2345566666688877743
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-08 Score=92.08 Aligned_cols=115 Identities=19% Similarity=0.290 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272)
Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272)
....++..+++.+...++++|||+=||.|.++..+|+. ..+|+|+|+++.+++.|+++++.+++. |++|..++.++..
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~~ 354 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEFT 354 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHHh
Confidence 34445678888888888999999999999999999975 789999999999999999999999996 5999999999887
Q ss_pred C----CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 K----ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ~----~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
. ...+|+|+....=.-++ +.+++.+.+ ++|...++++
T Consensus 355 ~~~~~~~~~d~VvvDPPR~G~~----~~~lk~l~~-~~p~~IvYVS 395 (432)
T COG2265 355 PAWWEGYKPDVVVVDPPRAGAD----REVLKQLAK-LKPKRIVYVS 395 (432)
T ss_pred hhccccCCCCEEEECCCCCCCC----HHHHHHHHh-cCCCcEEEEe
Confidence 2 25889999987655552 356666555 4788888885
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-09 Score=91.71 Aligned_cols=105 Identities=16% Similarity=0.182 Sum_probs=84.0
Q ss_pred CCEEEEECCCchH----HHHHHHHcc-----CCEEEEEcCCHHHHHHHHHHH------------------HH-----c--
Q 024096 35 GQEVLDIGCGWGT----LAIEIVKQT-----GCKYTGITLSEEQLKYAEIKV------------------RE-----A-- 80 (272)
Q Consensus 35 ~~~vLDiG~G~G~----~~~~l~~~~-----~~~v~gvd~s~~~~~~a~~~~------------------~~-----~-- 80 (272)
.-+|+..||.+|- ++..+.+.. ..+|+|+|+|+..++.|++-. .. .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999995 555555531 368999999999999998742 00 0
Q ss_pred -----CCCCCeEEEEcccCCCC--CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 81 -----GLQDHIRFYLCDYRQLP--KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 81 -----g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+...|.|.+.|+.+.+ +.+.||+|+|.+++.|++++....+++++++.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 12346899999988754 357899999999999998888899999999999999999873
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=90.01 Aligned_cols=108 Identities=11% Similarity=0.255 Sum_probs=80.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---- 97 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---- 97 (272)
.++.+.+.+... +.+|||++||+|.++..+++. ..+|+|+|+++.+++.+++++..+++. +++++.+|+.+..
T Consensus 195 l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~ 271 (362)
T PRK05031 195 MLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMN 271 (362)
T ss_pred HHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHh
Confidence 345555555432 357999999999999998886 569999999999999999999999884 8999999986632
Q ss_pred C-------------CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 K-------------ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ~-------------~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
. ..+||+|+....-.-+ . ..+++.+.+ |++.++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~--~--~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 272 GVREFNRLKGIDLKSYNFSTIFVDPPRAGL--D--DETLKLVQA---YERILYIS 319 (362)
T ss_pred hcccccccccccccCCCCCEEEECCCCCCC--c--HHHHHHHHc---cCCEEEEE
Confidence 0 1258999998764332 1 455555543 68888875
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.9e-09 Score=87.56 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=101.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchH----HHHHHHHc-c-----CCEEEEEcCCHHHHHHHHHH
Q 024096 7 IFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGT----LAIEIVKQ-T-----GCKYTGITLSEEQLKYAEIK 76 (272)
Q Consensus 7 ~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~----~~~~l~~~-~-----~~~v~gvd~s~~~~~~a~~~ 76 (272)
.|..+.+.++......+..++..... ..-+|+-.||++|. ++..+.+. + ..+|+|+|+|...++.|+.-
T Consensus 70 ~FFR~~~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 70 EFFRDPEHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred hhccCcHHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 34455667777777777777765443 56799999999994 55655555 2 47899999999999998762
Q ss_pred H-----HHc-----------------------CCCCCeEEEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHH
Q 024096 77 V-----REA-----------------------GLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCE 127 (272)
Q Consensus 77 ~-----~~~-----------------------g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~ 127 (272)
. ... .+...|.|...|+...+ ..+.||+|+|.+++-+++.+....++++.+
T Consensus 149 ~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~ 228 (268)
T COG1352 149 IYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFA 228 (268)
T ss_pred CCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHH
Confidence 1 000 12235788888877766 667899999999999999888899999999
Q ss_pred hcCccCcEEEE
Q 024096 128 SLLATHGLLVL 138 (272)
Q Consensus 128 ~~LkpgG~l~i 138 (272)
..|+|||+|++
T Consensus 229 ~~L~~gG~Lfl 239 (268)
T COG1352 229 DSLKPGGLLFL 239 (268)
T ss_pred HHhCCCCEEEE
Confidence 99999999998
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-09 Score=87.65 Aligned_cols=109 Identities=26% Similarity=0.354 Sum_probs=83.7
Q ss_pred HcCCCCCCEEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCC-CCCeEEEEcccCCCC---CCCCcc
Q 024096 29 KARVSKGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGL-QDHIRFYLCDYRQLP---KANKYD 103 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~-~~~i~~~~~d~~~~~---~~~~fD 103 (272)
....+.|.+|||.+.|.|..++..+++ |+ +|+.+|.+|..++.|.-|-=..++ ..+++++.+|..++- .+++||
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 344567999999999999999999987 66 999999999999888765322222 236899999987654 578899
Q ss_pred EEEEech-hhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 104 RIISCGM-IEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 104 ~V~~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+|+-... +.+.+.-.-.++.++++|+|||||+++-
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 9986543 2223322447899999999999999974
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.2e-09 Score=96.36 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHHHHHcCC-------CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 024096 13 EDLEVGQMRKVSVLIEKARV-------SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQD 84 (272)
Q Consensus 13 ~~l~~aq~~~~~~l~~~l~~-------~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~ 84 (272)
..+.+.|...++.....+.+ ..+..+||||||.|.++..+|.. ++..++|+|+....+..+...+...++ .
T Consensus 319 ~~~~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~ 397 (506)
T PRK01544 319 KSLSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-T 397 (506)
T ss_pred CCCCHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-C
Confidence 35777888777665544432 35679999999999999999998 889999999999999999888888887 4
Q ss_pred CeEEEEcccCCCC---CCCCccEEEEechhhccChh------hHHHHHHHHHhcCccCcEEEEE
Q 024096 85 HIRFYLCDYRQLP---KANKYDRIISCGMIEHVGHD------YMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 85 ~i~~~~~d~~~~~---~~~~fD~V~~~~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
|+.+++.|+..+. +++++|.|+.++.-.|.-.+ -.+.+++.+.+.|+|||.+.+.
T Consensus 398 N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 398 NFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred eEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 8999988876544 56889999998876654211 1257999999999999999984
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.1e-09 Score=84.13 Aligned_cols=108 Identities=24% Similarity=0.338 Sum_probs=82.2
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIIS 107 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~ 107 (272)
-++.+|||+-||+|.++....++...+|+.+|.++..+...++|++..+..+++.++..|....- ...+||+|+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 46889999999999999999888556999999999999999999999998778999999954322 4689999999
Q ss_pred echhhccChhhHHHHHHHHH--hcCccCcEEEEEeec
Q 024096 108 CGMIEHVGHDYMEEFFGCCE--SLLATHGLLVLQFIS 142 (272)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~ 142 (272)
......- .....+++.+. .+|+++|.+++....
T Consensus 121 DPPY~~~--~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 121 DPPYAKG--LYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp --STTSC--HHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred CCCcccc--hHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 9876653 11366777776 899999999985443
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.8e-09 Score=91.71 Aligned_cols=99 Identities=17% Similarity=0.164 Sum_probs=81.5
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-CCCccEEEEechh
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK-ANKYDRIISCGMI 111 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~-~~~fD~V~~~~~~ 111 (272)
++.+|||++||+|..+..++.. ...+|+++|+++..++.+++|++.+++. ++.+.++|+..+.. .+.||+|++...
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~- 134 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPF- 134 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCC-
Confidence 3579999999999999999886 3358999999999999999999999885 67899999876543 467999999652
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.. ...++....+.+++||.++++
T Consensus 135 -Gs----~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GS----PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CC----cHHHHHHHHHHhcCCCEEEEE
Confidence 22 256777767778999999997
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-08 Score=80.52 Aligned_cols=95 Identities=20% Similarity=0.292 Sum_probs=81.7
Q ss_pred EEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhccC
Q 024096 37 EVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVG 115 (272)
Q Consensus 37 ~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~ 115 (272)
+++|||+|.|-.++.++-. +..+++.+|....-+...+......|++ |++++++.+++.....+||+|++..+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fd~v~aRAv~---- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEPEYRESFDVVTARAVA---- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHTTTTT-EEEEEEESSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecccccCCCccEEEeehhc----
Confidence 8999999999999888877 8899999999999999999999999995 899999999993356899999997642
Q ss_pred hhhHHHHHHHHHhcCccCcEEEE
Q 024096 116 HDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 116 ~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.+..+++-+...+++||++++
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEE
Confidence 347889999999999999987
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-09 Score=87.18 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=85.5
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechhh
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIE 112 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~ 112 (272)
....++||||+.|.+...+..+.-.+++-+|.|..|++.++.. ...++ .+...++|-+.++ .++++|+|++...+|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhhhh
Confidence 4568999999999999999887445899999999999988754 12222 4677889989898 789999999999999
Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
++ ++++.-+.+|...|||+|.++.+
T Consensus 149 W~--NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 149 WT--NDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hh--ccCchHHHHHHHhcCCCccchhH
Confidence 99 77899999999999999999864
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.5e-09 Score=90.08 Aligned_cols=106 Identities=21% Similarity=0.305 Sum_probs=81.6
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEcccCCCC--CCCCccEEEE
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAG--L-QDHIRFYLCDYRQLP--KANKYDRIIS 107 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g--~-~~~i~~~~~d~~~~~--~~~~fD~V~~ 107 (272)
...+||.||+|.|..+..+.+. ...+++.+|+++..++.+++.+...+ + .++++++.+|..+.- ..++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4579999999999999998886 45689999999999999999875431 1 368999999987754 4578999998
Q ss_pred echhhcc---Chh--hHHHHHH-HHHhcCccCcEEEEEe
Q 024096 108 CGMIEHV---GHD--YMEEFFG-CCESLLATHGLLVLQF 140 (272)
Q Consensus 108 ~~~~~~~---~~~--~~~~~l~-~~~~~LkpgG~l~i~~ 140 (272)
... ... +.. .-.++++ .+.+.|+|||.+++..
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 732 111 000 1246787 8999999999998753
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.4e-08 Score=84.54 Aligned_cols=121 Identities=20% Similarity=0.257 Sum_probs=95.6
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-c--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-T--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--- 97 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--- 97 (272)
......++..+|.+|||++++.|+=+.++++. . +..|+++|.++.-+...+++++..|+. ++.+.+.|....+
T Consensus 146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~ 224 (355)
T COG0144 146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELL 224 (355)
T ss_pred HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccc
Confidence 34456778899999999999999999999987 2 356799999999999999999999986 5889999887665
Q ss_pred CC-CCccEEEEechhhcc------Ch--------------hhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 98 KA-NKYDRIISCGMIEHV------GH--------------DYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 98 ~~-~~fD~V~~~~~~~~~------~~--------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
.. ++||.|+......-. |+ +-..++++...++|||||.|+.++.+...
T Consensus 225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 22 359999986422111 11 22467899999999999999998777443
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-08 Score=86.56 Aligned_cols=107 Identities=22% Similarity=0.262 Sum_probs=80.7
Q ss_pred CCCEEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC----CCCCccEEEE
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYRQLP----KANKYDRIIS 107 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~----~~~~fD~V~~ 107 (272)
.+.+|||+-|=+|+++...+.. |+ +|+.||.|...++++++++..||++ +++++++.|+.+.- ..++||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 5789999999999999988775 54 8999999999999999999999985 68999999986632 3469999999
Q ss_pred echhhccC----hhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 108 CGMIEHVG----HDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 108 ~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
...-.--+ .++...++..+.++|+|||.+++...
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 76422111 14567789999999999999886433
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-09 Score=88.23 Aligned_cols=177 Identities=23% Similarity=0.219 Sum_probs=103.9
Q ss_pred ccccccCCCCCCHH--HHHHHHHHHHHHHcC--CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH
Q 024096 3 YSCAIFKSEHEDLE--VGQMRKVSVLIEKAR--VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVR 78 (272)
Q Consensus 3 y~~~~~~~~~~~l~--~aq~~~~~~l~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~ 78 (272)
|...+|....++.. +.-.-.++.+.+.+. ...|.++||||||+-.....-+...-.+|+..|.++..++..++.++
T Consensus 21 Yl~~yY~~~~~~~~~~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~ 100 (256)
T PF01234_consen 21 YLDTYYSFPSGDDAEDEILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLR 100 (256)
T ss_dssp HHHHHHSTSSS-CHHHHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHhcCCCccCcccchhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHC
Confidence 55567765555544 222333444544443 23578999999998544332233234589999999999887776554
Q ss_pred Hc----------------CCC-----------CCe-EEEEcccCCCC--CC-----CCccEEEEechhhccCh--hhHHH
Q 024096 79 EA----------------GLQ-----------DHI-RFYLCDYRQLP--KA-----NKYDRIISCGMIEHVGH--DYMEE 121 (272)
Q Consensus 79 ~~----------------g~~-----------~~i-~~~~~d~~~~~--~~-----~~fD~V~~~~~~~~~~~--~~~~~ 121 (272)
+. |-. ..| +++.+|+.+.+ .+ .+||+|++..+++.+.. +....
T Consensus 101 ~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~ 180 (256)
T PF01234_consen 101 KEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRR 180 (256)
T ss_dssp T-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHH
T ss_pred CCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHH
Confidence 32 100 123 47889988766 21 35999999999998753 45678
Q ss_pred HHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEE
Q 024096 122 FFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLE 190 (272)
Q Consensus 122 ~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~ 190 (272)
.++++.++|||||.|++........ -......|| .++-.++.++..++++||.|...+
T Consensus 181 al~ni~~lLkpGG~Lil~~~l~~t~---------Y~vG~~~F~--~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 181 ALRNISSLLKPGGHLILAGVLGSTY---------YMVGGHKFP--CLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp HHHHHHTTEEEEEEEEEEEESS-SE---------EEETTEEEE-----B-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEEEEcCcee---------EEECCEecc--cccCCHHHHHHHHHHcCCEEEecc
Confidence 9999999999999999865542111 111111121 233334444555567999998877
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-08 Score=88.75 Aligned_cols=108 Identities=11% Similarity=0.204 Sum_probs=80.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC---
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK--- 98 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~--- 98 (272)
.++.+++.+...+ .+|||++||+|.++..+++. ..+|+|+|+++.+++.+++++..+++. +++++.+|+.+...
T Consensus 186 l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~ 262 (353)
T TIGR02143 186 MLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMN 262 (353)
T ss_pred HHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHh
Confidence 3455556555333 47999999999999999986 459999999999999999999999885 79999999876331
Q ss_pred --------------CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 99 --------------ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 --------------~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
...||+|+....=.-+ . ..+++.+. +|++.++++
T Consensus 263 ~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~--~--~~~l~~l~---~~~~ivYvs 310 (353)
T TIGR02143 263 GVREFRRLKGIDLKSYNCSTIFVDPPRAGL--D--PDTCKLVQ---AYERILYIS 310 (353)
T ss_pred hccccccccccccccCCCCEEEECCCCCCC--c--HHHHHHHH---cCCcEEEEE
Confidence 0138999998763222 1 34555554 378888885
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.2e-08 Score=72.58 Aligned_cols=102 Identities=14% Similarity=0.160 Sum_probs=75.8
Q ss_pred HHHHHHcCCCCCCEEEEECCCchH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC--CC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK--AN 100 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~--~~ 100 (272)
+.+.+.+....+.+|||||||.|. .+..|++. |.+|+++|+++..++.++++ .++++.+|+.+... -.
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYK 76 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHh
Confidence 456666666667899999999996 88888875 89999999999988888765 46899999988762 37
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
.+|+|.+... ..++...+.++++. -|.-+++...
T Consensus 77 ~a~liysirp-----p~el~~~~~~la~~--~~~~~~i~~l 110 (134)
T PRK04148 77 NAKLIYSIRP-----PRDLQPFILELAKK--INVPLIIKPL 110 (134)
T ss_pred cCCEEEEeCC-----CHHHHHHHHHHHHH--cCCCEEEEcC
Confidence 8999999743 23445555555553 4555666433
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4e-09 Score=92.38 Aligned_cols=112 Identities=20% Similarity=0.290 Sum_probs=99.8
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEec
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCG 109 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~ 109 (272)
...++.+++|+|||.|..+..++....+.++|+|.++.++..+.......++.++-.++.+|+.+.| +++.||.+.+..
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 4568889999999999999999987778999999999999999998888888777778999999998 789999999999
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEEEeecCC
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272)
+.+|.+ +...++++++++++|||+++..++...
T Consensus 187 ~~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 187 VVCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred ecccCC--cHHHHHHHHhcccCCCceEEeHHHHHh
Confidence 999995 558999999999999999998766643
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.2e-08 Score=76.12 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=86.6
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEe
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISC 108 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~ 108 (272)
......-+||||||+|..+.+|++. ++....++|++|...+..++.++.++. ++..++.|+...-..++.|+++.+
T Consensus 40 ~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~~~VDvLvfN 117 (209)
T KOG3191|consen 40 KGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFN 117 (209)
T ss_pred hhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhccCCccEEEEC
Confidence 3334678999999999999999988 667899999999999999999988875 688999998776655899999887
Q ss_pred chhhcc-------------------ChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 109 GMIEHV-------------------GHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 109 ~~~~~~-------------------~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
....-- +.+-...++..+-.+|.|.|.+++...
T Consensus 118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 643211 123346688888899999999998543
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-08 Score=83.39 Aligned_cols=87 Identities=17% Similarity=0.275 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
..++.+++..++.+++.|||||+|.|.++..|+++ +.+|+++|+++.+++..++... ..++++++++|+...+.+.
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchh
Confidence 44788999999999999999999999999999997 7789999999999999988865 2368999999999988444
Q ss_pred --CccEEEEechh
Q 024096 101 --KYDRIISCGMI 111 (272)
Q Consensus 101 --~fD~V~~~~~~ 111 (272)
.++.|+++-..
T Consensus 93 l~~~~~vVaNlPY 105 (259)
T COG0030 93 LAQPYKVVANLPY 105 (259)
T ss_pred hcCCCEEEEcCCC
Confidence 78999987653
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-08 Score=82.23 Aligned_cols=90 Identities=18% Similarity=0.303 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
..++.+++..++++++.|||+|.|+|.++..|.+. +++|+++|+++.++....++........+.++.++|+...+. .
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-P 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-c
Confidence 34578889999999999999999999999999997 899999999999999999988766555789999999988762 4
Q ss_pred CccEEEEechhh
Q 024096 101 KYDRIISCGMIE 112 (272)
Q Consensus 101 ~fD~V~~~~~~~ 112 (272)
.||.++++....
T Consensus 123 ~fd~cVsNlPyq 134 (315)
T KOG0820|consen 123 RFDGCVSNLPYQ 134 (315)
T ss_pred ccceeeccCCcc
Confidence 799999865443
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.4e-07 Score=77.79 Aligned_cols=143 Identities=21% Similarity=0.248 Sum_probs=99.5
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc---------------------------------
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA--------------------------------- 80 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~--------------------------------- 80 (272)
...+||--|||.|.++..+|.. |..+.|.|.|--|+-..+-.+...
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 4579999999999999999997 889999999998865555433210
Q ss_pred ------CCCCCeEEEEcccCCCC-CC---CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCcccc
Q 024096 81 ------GLQDHIRFYLCDYRQLP-KA---NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDE 150 (272)
Q Consensus 81 ------g~~~~i~~~~~d~~~~~-~~---~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 150 (272)
..+.++....||+.++- .+ ++||+|++.+-+... +++.++++.|.++|||||+.+= ...-.+..
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WIN----~GPLlyh~ 208 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWIN----FGPLLYHF 208 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEEe----cCCccccC
Confidence 11346788888988876 33 699999999888876 7789999999999999996652 11111110
Q ss_pred ccCcchhhhhcccC-CCCCCCHHHHHHHhhcCCCcEEEEEEe
Q 024096 151 YRLSPGFIKEYIFP-GGCLPSLGRVTSAMTSSSGLCVEHLEN 191 (272)
Q Consensus 151 ~~~~~~~~~~~~~p-~~~~~~~~~~~~~l~~~~Gf~v~~~~~ 191 (272)
.. . .... ..--.+.+++. .+.+..||+++..+.
T Consensus 209 ~~-~------~~~~~~sveLs~eEi~-~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 EP-M------SIPNEMSVELSLEEIK-ELIEKLGFEIEKEES 242 (270)
T ss_pred CC-C------CCCCCcccCCCHHHHH-HHHHHCCCEEEEEEE
Confidence 00 0 0000 01124677777 456669999977655
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-09 Score=95.95 Aligned_cols=128 Identities=16% Similarity=0.198 Sum_probs=88.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCC--C--CCCEEEEECCCchHHHHHHHHccCCEEEEE---cCCHHHHHHHHHHHHHcC
Q 024096 9 KSEHEDLEVGQMRKVSVLIEKARV--S--KGQEVLDIGCGWGTLAIEIVKQTGCKYTGI---TLSEEQLKYAEIKVREAG 81 (272)
Q Consensus 9 ~~~~~~l~~aq~~~~~~l~~~l~~--~--~~~~vLDiG~G~G~~~~~l~~~~~~~v~gv---d~s~~~~~~a~~~~~~~g 81 (272)
..+...+...-...++.|.+.++. . .-..+||+|||.|+++.+|.++ +..+..+ |..+.+++.|.++ |
T Consensus 88 Pgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR----G 162 (506)
T PF03141_consen 88 PGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER----G 162 (506)
T ss_pred CCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc----C
Confidence 344445555556667777777665 3 3368999999999999999987 5443333 3344566666655 5
Q ss_pred CCCCeEEEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCC
Q 024096 82 LQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272)
Q Consensus 82 ~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272)
++.-+ -..-...+| +++.||+|.|..++..+...+ .-++-++.|+|+|||+++++.....
T Consensus 163 vpa~~--~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 163 VPAMI--GVLGSQRLPFPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cchhh--hhhccccccCCccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCccc
Confidence 54211 122346788 889999999998887764332 4588899999999999999766544
|
; GO: 0008168 methyltransferase activity |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.2e-08 Score=79.04 Aligned_cols=97 Identities=22% Similarity=0.327 Sum_probs=84.2
Q ss_pred CCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC-ccEEEEechhh
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK-YDRIISCGMIE 112 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~-fD~V~~~~~~~ 112 (272)
+.+++|||+|.|-.++.+|-. ++.+++-+|....-+...+......+++ |++++++.++++..... ||+|++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~~~~~D~vtsRAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQEKKQYDVVTSRAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccccccCcEEEeehc--
Confidence 589999999999999998844 7889999999999999999999999985 89999999999985444 999999754
Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.++..+.+-+..++|+||.+++
T Consensus 145 ----a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 ----ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ----cchHHHHHHHHHhcccCCcchh
Confidence 3446788889999999998865
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.6e-08 Score=85.24 Aligned_cols=106 Identities=24% Similarity=0.304 Sum_probs=90.5
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC-CCccEEEEechh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA-NKYDRIISCGMI 111 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~-~~fD~V~~~~~~ 111 (272)
.+|.+|||+-+|.|.+++.+|.....+|+++|++|..++..+++++.|++.+.+..+++|.....+. ..+|.|+....-
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 3599999999999999999999733459999999999999999999999988899999999998854 889999986432
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeecCC
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272)
....++....+.+++||.+.+.+....
T Consensus 267 ------~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 267 ------SAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred ------cchhhHHHHHHHhhcCcEEEEEeccch
Confidence 235788888888999999998766643
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-07 Score=73.53 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=89.0
Q ss_pred HHHHHHcCC--CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----
Q 024096 24 SVLIEKARV--SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---- 97 (272)
Q Consensus 24 ~~l~~~l~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---- 97 (272)
+.+.+.+.. -.|.++||+-+|+|.++...+++....++.+|.+...+...++|++..++..+.+++..|.....
T Consensus 31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~ 110 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG 110 (187)
T ss_pred HHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC
Confidence 344555543 46889999999999999999998667999999999999999999999998789999999987542
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHH--HHhcCccCcEEEEEe
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGC--CESLLATHGLLVLQF 140 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~--~~~~LkpgG~l~i~~ 140 (272)
..+.||+|+....++. ..-+....+.. -..+|+|+|.+++..
T Consensus 111 ~~~~FDlVflDPPy~~-~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 111 TREPFDLVFLDPPYAK-GLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCcccEEEeCCCCcc-chhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 2235999999988772 11111222222 457899999999853
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-08 Score=79.68 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHH-------HcCC-CCCeE
Q 024096 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVR-------EAGL-QDHIR 87 (272)
Q Consensus 17 ~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~-------~~g~-~~~i~ 87 (272)
+.....+..+++.+++.+++..+|+|||.|....+.+...++ +++|+|+.+...+.|+...+ ..|. ..+++
T Consensus 25 Ei~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~ 104 (205)
T PF08123_consen 25 EISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE 104 (205)
T ss_dssp GCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE
T ss_pred ecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce
Confidence 344456677889999999999999999999998888876555 59999999999888776443 2233 34688
Q ss_pred EEEcccCCCC--C--CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 88 FYLCDYRQLP--K--ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 88 ~~~~d~~~~~--~--~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+.++|+.+.+ . -...|+|++++... + ++....+.+....||+|.+++-
T Consensus 105 l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 105 LIHGDFLDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp EECS-TTTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEE
T ss_pred eeccCccccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEE
Confidence 8999987754 1 14579999987643 2 4455666777888999988764
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-07 Score=76.79 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=88.8
Q ss_pred CCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CCCCcc
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------KANKYD 103 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~~~~fD 103 (272)
..+.++||||.=+|..+..+|.. .+.+|+++|+++...+.+.+..+..|...+|.+++++..+.- ..+.||
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 35679999999999999888887 568999999999999999999999999999999999976632 357899
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
.++.. |.- .+...+.+++.+++|+||.+++.....
T Consensus 152 faFvD----adK-~nY~~y~e~~l~Llr~GGvi~~DNvl~ 186 (237)
T KOG1663|consen 152 FAFVD----ADK-DNYSNYYERLLRLLRVGGVIVVDNVLW 186 (237)
T ss_pred EEEEc----cch-HHHHHHHHHHHhhcccccEEEEecccc
Confidence 99974 442 234588999999999999999865443
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-07 Score=78.55 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=67.8
Q ss_pred HHHHHHHHHHcCC-CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE-EEEcccCCCC
Q 024096 20 MRKVSVLIEKARV-SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIR-FYLCDYRQLP 97 (272)
Q Consensus 20 ~~~~~~l~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~-~~~~d~~~~~ 97 (272)
..++..+++.+++ .++.+|||+|||+|.++..+++....+|+++|+++.++.... +.+ .++. +...|+....
T Consensus 60 ~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l---~~~---~~v~~~~~~ni~~~~ 133 (228)
T TIGR00478 60 GEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKL---RQD---ERVKVLERTNIRYVT 133 (228)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH---hcC---CCeeEeecCCcccCC
Confidence 3455677777765 477899999999999999999974458999999998776621 111 1322 3333444332
Q ss_pred -----C-CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 98 -----K-ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 98 -----~-~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+ -..+|++++.. ...+..+...|+| |.+++
T Consensus 134 ~~~~~~d~~~~DvsfiS~----------~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 134 PADIFPDFATFDVSFISL----------ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred HhHcCCCceeeeEEEeeh----------HhHHHHHHHHhCc-CeEEE
Confidence 1 12566655532 3467888899999 77665
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-07 Score=80.92 Aligned_cols=103 Identities=25% Similarity=0.360 Sum_probs=83.9
Q ss_pred CEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEcccCCCC--CCCCccEEEEec
Q 024096 36 QEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAG--L-QDHIRFYLCDYRQLP--KANKYDRIISCG 109 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g--~-~~~i~~~~~d~~~~~--~~~~fD~V~~~~ 109 (272)
.+||-||-|.|+.++.+.+. .-.+++.+|+++..++.+++.+.... . .++++++..|..+.- ..++||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999998 45799999999999999999886432 2 368999999987765 335899999865
Q ss_pred hhhccCh-h--hHHHHHHHHHhcCccCcEEEEE
Q 024096 110 MIEHVGH-D--YMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 110 ~~~~~~~-~--~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.-. .+. + .-..+++.|.+.|+++|.++..
T Consensus 158 tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 433 222 0 1268999999999999999986
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.5e-07 Score=81.53 Aligned_cols=95 Identities=25% Similarity=0.395 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272)
Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272)
....+++.+++.++..++ +|||+-||.|.++..+|+. ..+|+|+|+++.+++.|+++++.+++. +++|+.++.+++.
T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~~ 257 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDFA 257 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCC
T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccchh
Confidence 344556777888887666 8999999999999999986 679999999999999999999999984 8999998765542
Q ss_pred -----------------CCCCccEEEEechhhccC
Q 024096 98 -----------------KANKYDRIISCGMIEHVG 115 (272)
Q Consensus 98 -----------------~~~~fD~V~~~~~~~~~~ 115 (272)
....+|+|+....=.-+.
T Consensus 258 ~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 258 KALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp CHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 123689999877655553
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-08 Score=74.20 Aligned_cols=89 Identities=20% Similarity=0.338 Sum_probs=71.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANK 101 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~ 101 (272)
+..+-+-++--.|.+++|+|||.|.++...+......|+|+|++|+.++.+++|+....+ ++.+.++|+.++. ..+.
T Consensus 37 ~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~ 114 (185)
T KOG3420|consen 37 LYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGI 114 (185)
T ss_pred HHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCe
Confidence 344445555457899999999999999665543345799999999999999999988765 5799999999987 4578
Q ss_pred ccEEEEechhhc
Q 024096 102 YDRIISCGMIEH 113 (272)
Q Consensus 102 fD~V~~~~~~~~ 113 (272)
||.++.+..+..
T Consensus 115 fDtaviNppFGT 126 (185)
T KOG3420|consen 115 FDTAVINPPFGT 126 (185)
T ss_pred EeeEEecCCCCc
Confidence 999999987653
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-08 Score=78.50 Aligned_cols=74 Identities=27% Similarity=0.384 Sum_probs=57.1
Q ss_pred CEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC---CC-CccEEEEech
Q 024096 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK---AN-KYDRIISCGM 110 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~---~~-~fD~V~~~~~ 110 (272)
..|+|+.||.|+.++.+|+. ..+|+++|+++..++.++.|++-.|+.++|.++++|+.++.. .. .+|+|++...
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 37999999999999999997 679999999999999999999999988899999999887651 12 2899998764
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-07 Score=78.71 Aligned_cols=124 Identities=22% Similarity=0.178 Sum_probs=83.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK 98 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 98 (272)
..+..+..+++.....+|||+|||+|..+..+.+. . -.+++++|.|+.+.+.++..++................+..+
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc
Confidence 33455555555456679999999999876655554 2 358999999999999999877654321111111111111112
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCC
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272)
....|+|++.+++..++++....+++++.+.+.+ .+++.+...+..
T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G 145 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG 145 (274)
T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH
Confidence 2334999999999999887788899999887766 777766665443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.7e-08 Score=80.21 Aligned_cols=108 Identities=28% Similarity=0.322 Sum_probs=81.7
Q ss_pred CCCCEEEEECCCchHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCC---CCCeEEEEcccCCCC--CCC-CccEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREAGL---QDHIRFYLCDYRQLP--KAN-KYDRI 105 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~g~---~~~i~~~~~d~~~~~--~~~-~fD~V 105 (272)
+...+||-||-|.|..+..+.+.+ ..+++.+|+++..++.+++.+..... .++++++.+|....- ..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 357899999999999999999873 57999999999999999998764321 368999999986654 234 89999
Q ss_pred EEechhhccChh--hHHHHHHHHHhcCccCcEEEEEe
Q 024096 106 ISCGMIEHVGHD--YMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 106 ~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
++...-...+.. .-.++++.+.+.|+|||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 986543222111 12689999999999999999865
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.2e-08 Score=83.13 Aligned_cols=87 Identities=11% Similarity=0.132 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272)
+++.+++.+.+.++..+||.+||.|+.+..+++.. ..+|+|+|.++.+++.+++++.. .++++++++|+.++.
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEV 83 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHH
Confidence 35778888888899999999999999999999883 57999999999999999988754 358999999999876
Q ss_pred -CC--CCccEEEEechh
Q 024096 98 -KA--NKYDRIISCGMI 111 (272)
Q Consensus 98 -~~--~~fD~V~~~~~~ 111 (272)
+. .++|.|+....+
T Consensus 84 l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 84 LAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHcCCCccCEEEECCCc
Confidence 22 279999987543
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-07 Score=77.76 Aligned_cols=166 Identities=12% Similarity=0.085 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHcCCC-CCCEEEEECCC--chHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 024096 16 EVGQMRKVSVLIEKARVS-KGQEVLDIGCG--WGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90 (272)
Q Consensus 16 ~~aq~~~~~~l~~~l~~~-~~~~vLDiG~G--~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~ 90 (272)
..+.+..+.+.++.+.-. .-...|||||| +-.....++++ ++++|+.+|.+|-.+..++..+..+.- .+..+++
T Consensus 49 ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~ 127 (267)
T PF04672_consen 49 ARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQ 127 (267)
T ss_dssp HHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEe
Confidence 355566666667766555 44799999999 44466777776 899999999999999999998876531 2489999
Q ss_pred cccCCCC---C----CCCcc-----EEEEechhhccCh-hhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchh
Q 024096 91 CDYRQLP---K----ANKYD-----RIISCGMIEHVGH-DYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGF 157 (272)
Q Consensus 91 ~d~~~~~---~----~~~fD-----~V~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 157 (272)
+|+.+.. . .+-+| .|+...++||+++ +++..+++.+.+.|.||.+|+++..+.... ..........
T Consensus 128 aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~-p~~~~~~~~~ 206 (267)
T PF04672_consen 128 ADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA-PERAEALEAV 206 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS-HHHHHHHHHH
T ss_pred CCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC-HHHHHHHHHH
Confidence 9997754 1 12333 6788899999987 688999999999999999999988875332 1111111111
Q ss_pred hhhcccCCCCCCCHHHHHHHhhcCCCcEEE
Q 024096 158 IKEYIFPGGCLPSLGRVTSAMTSSSGLCVE 187 (272)
Q Consensus 158 ~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~ 187 (272)
...- .....+.+.+++. .+. .||+++
T Consensus 207 ~~~~-~~~~~~Rs~~ei~-~~f--~g~elv 232 (267)
T PF04672_consen 207 YAQA-GSPGRPRSREEIA-AFF--DGLELV 232 (267)
T ss_dssp HHHC-CS----B-HHHHH-HCC--TTSEE-
T ss_pred HHcC-CCCceecCHHHHH-HHc--CCCccC
Confidence 1111 2223455677776 444 488765
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.5e-07 Score=71.67 Aligned_cols=98 Identities=28% Similarity=0.368 Sum_probs=73.3
Q ss_pred EEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CCCCCCccEEEEechhhccC
Q 024096 38 VLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-LPKANKYDRIISCGMIEHVG 115 (272)
Q Consensus 38 vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-~~~~~~fD~V~~~~~~~~~~ 115 (272)
|.||||-.|.+...|.+. .-.+++++|+++..++.|++++...|+.++++++.+|..+ +++.+..|.|+..++--
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence 689999999999999998 3347999999999999999999999999999999999654 44444579998876543
Q ss_pred hhhHHHHHHHHHhcCccCcEEEEE
Q 024096 116 HDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 116 ~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.-...++++....++....++++
T Consensus 78 -~lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 78 -ELIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp -HHHHHHHHHTGGGGTT--EEEEE
T ss_pred -HHHHHHHHhhHHHhccCCeEEEe
Confidence 44578888888888777788874
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.9e-07 Score=80.56 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=83.2
Q ss_pred CCEEEEECCCchHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEech
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ-TG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGM 110 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~-~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~ 110 (272)
+.+|||+.||+|..++.++.+ .+ .+|+++|+++..++.+++|++.++.. ++++.++|+..+. ...+||+|....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 469999999999999999987 33 58999999999999999999998874 6899999988765 236799999865
Q ss_pred hhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 111 IEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+ .. ...++..+.+.++++|.++++.
T Consensus 123 f-Gs----~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 F-GT----PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C-CC----cHHHHHHHHHhcccCCEEEEEe
Confidence 3 22 2478888899999999999963
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.65 E-value=9e-07 Score=76.51 Aligned_cols=114 Identities=12% Similarity=0.165 Sum_probs=85.4
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCC-
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-----TGCKYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYRQL- 96 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-----~~~~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~- 96 (272)
..|.+.+ .++..|+|+|||.|.-+..|.+. ...+++++|+|...++.+.+++.....+ -.+.-+++|+.+.
T Consensus 68 ~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l 145 (319)
T TIGR03439 68 SDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGL 145 (319)
T ss_pred HHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHH
Confidence 4455554 46779999999999977766554 2468999999999999999988733333 1344488988663
Q ss_pred ---CC---CCCccEEEEec-hhhccChhhHHHHHHHHHh-cCccCcEEEEE
Q 024096 97 ---PK---ANKYDRIISCG-MIEHVGHDYMEEFFGCCES-LLATHGLLVLQ 139 (272)
Q Consensus 97 ---~~---~~~fD~V~~~~-~~~~~~~~~~~~~l~~~~~-~LkpgG~l~i~ 139 (272)
+. .....+|+..+ ++.++++.+...+++++++ .|+|||.+++.
T Consensus 146 ~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 146 AWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred hhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 21 23456666654 8899988888899999999 99999999884
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.1e-07 Score=85.59 Aligned_cols=116 Identities=22% Similarity=0.253 Sum_probs=86.8
Q ss_pred HHHHHHcCC-CCCCEEEEECCCchHHHHHHHHc-----c--------------------------------------CCE
Q 024096 24 SVLIEKARV-SKGQEVLDIGCGWGTLAIEIVKQ-----T--------------------------------------GCK 59 (272)
Q Consensus 24 ~~l~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~-----~--------------------------------------~~~ 59 (272)
..|+...+. .++..++|.+||+|.+.+..+.. | ..+
T Consensus 179 aa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~ 258 (702)
T PRK11783 179 AAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSK 258 (702)
T ss_pred HHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCce
Confidence 445555555 56789999999999999887652 1 136
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C--CCCccEEEEechhhcc-C-hhhHHHHHHHHHhcCc---
Q 024096 60 YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-K--ANKYDRIISCGMIEHV-G-HDYMEEFFGCCESLLA--- 131 (272)
Q Consensus 60 v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~--~~~fD~V~~~~~~~~~-~-~~~~~~~l~~~~~~Lk--- 131 (272)
++|+|+++.+++.|++|+..+|+.+.+.+.++|+.+++ + .++||+|+++.....- + ..+...+.+.+.+.++
T Consensus 259 i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~ 338 (702)
T PRK11783 259 FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQF 338 (702)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999888999999998886 2 2579999999765432 2 1334455555544444
Q ss_pred cCcEEEEE
Q 024096 132 THGLLVLQ 139 (272)
Q Consensus 132 pgG~l~i~ 139 (272)
+|+.+++.
T Consensus 339 ~g~~~~ll 346 (702)
T PRK11783 339 GGWNAALF 346 (702)
T ss_pred CCCeEEEE
Confidence 88888763
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.1e-07 Score=77.75 Aligned_cols=125 Identities=19% Similarity=0.239 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC
Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL 96 (272)
Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 96 (272)
|...-......+...++.+|||++++.|+-+..+++. ...++++.|+++..+...+.++++.|.. ++.....|....
T Consensus 70 Qd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~ 148 (283)
T PF01189_consen 70 QDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKL 148 (283)
T ss_dssp HHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHH
T ss_pred cccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccc
Confidence 3333344455667889999999999999999999988 2579999999999999999999999984 788888888776
Q ss_pred C---CCCCccEEEEech------hhccCh--------------hhHHHHHHHHHhcC----ccCcEEEEEeecCC
Q 024096 97 P---KANKYDRIISCGM------IEHVGH--------------DYMEEFFGCCESLL----ATHGLLVLQFISAP 144 (272)
Q Consensus 97 ~---~~~~fD~V~~~~~------~~~~~~--------------~~~~~~l~~~~~~L----kpgG~l~i~~~~~~ 144 (272)
. ....||.|+.... +..-++ +-..++++++.+.+ ||||+++.++.+..
T Consensus 149 ~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 149 DPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp HHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred cccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 3 3346999998642 221111 22356899999999 99999999877743
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.8e-07 Score=78.61 Aligned_cols=119 Identities=21% Similarity=0.292 Sum_probs=83.1
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--------cCCEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEccc
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--------TGCKYTGITLSEEQLKYAEIKVREAGLQD-HIRFYLCDY 93 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--------~~~~v~gvd~s~~~~~~a~~~~~~~g~~~-~i~~~~~d~ 93 (272)
.+.+++.+...++.+|+|.+||+|++...+.+. ...+++|+|+++..+..++.++...+... +..+..+|.
T Consensus 35 ~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~ 114 (311)
T PF02384_consen 35 VDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDS 114 (311)
T ss_dssp HHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-T
T ss_pred HHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccc
Confidence 355666667788889999999999998887762 46799999999999999998876665532 346889997
Q ss_pred CCCC-C--CCCccEEEEechhhcc--Ch-----------------hhHHHHHHHHHhcCccCcEEEEEee
Q 024096 94 RQLP-K--ANKYDRIISCGMIEHV--GH-----------------DYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 94 ~~~~-~--~~~fD~V~~~~~~~~~--~~-----------------~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
...+ . ...||+|+++..+-.. .. ..--.++..+.+.|++||++++..+
T Consensus 115 l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 115 LENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp TTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 6655 2 4689999999866543 10 0112588999999999999876443
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.6e-07 Score=67.88 Aligned_cols=100 Identities=15% Similarity=0.262 Sum_probs=75.1
Q ss_pred CCCCCEEEEECCCchHHHHHHHH-----ccCCEEEEEcCCHHHHHHHHHHHHHcC--CCCCeEEEEcccCCCCCCCCccE
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVK-----QTGCKYTGITLSEEQLKYAEIKVREAG--LQDHIRFYLCDYRQLPKANKYDR 104 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~-----~~~~~v~gvd~s~~~~~~a~~~~~~~g--~~~~i~~~~~d~~~~~~~~~fD~ 104 (272)
..+..+|+|+|||.|.++..++. .++.+|+++|.++..++.+.++.+..+ +..++.+..++..+.......++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 46778999999999999999999 678999999999999999999988877 44577788877766554567788
Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
++...+--.+. ...++...+ |+-..++
T Consensus 103 ~vgLHaCG~Ls----~~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 103 LVGLHACGDLS----DRALRLFIR---PNARFLV 129 (141)
T ss_pred EEEeecccchH----HHHHHHHHH---cCCCEEE
Confidence 88764444332 345554444 5555444
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1e-06 Score=74.01 Aligned_cols=99 Identities=16% Similarity=0.014 Sum_probs=76.2
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEcccCCCCCCCCccEEEEe
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA--GL-QDHIRFYLCDYRQLPKANKYDRIISC 108 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~--g~-~~~i~~~~~d~~~~~~~~~fD~V~~~ 108 (272)
.+...+||=||.|-|+.++.+.+++ .+|+.+|+++..++.+++.+... ++ .++++++.. +.+. ..++||+|++.
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEEEEc
Confidence 3556899999999999999999985 49999999999999999955432 12 357777652 2111 23789999987
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
.. . .+.+.+.+.+.|+|||.++.+.
T Consensus 147 s~----~---~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE----P---DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC----C---ChHHHHHHHHhcCCCcEEEECC
Confidence 43 1 1678899999999999999853
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-07 Score=75.08 Aligned_cols=110 Identities=19% Similarity=0.241 Sum_probs=71.1
Q ss_pred HHHHHHHHHcC-CCC--CCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC
Q 024096 21 RKVSVLIEKAR-VSK--GQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272)
Q Consensus 21 ~~~~~l~~~l~-~~~--~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272)
-++..+.++.+ +.+ +.+|||+||++|+++..+.++. ..+|+|+|+.+. ... .++.++++|+.+
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~ 74 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITN 74 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEE
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccch
Confidence 35677778877 554 4899999999999999999984 489999999875 111 356667777644
Q ss_pred CC---------C--CCCccEEEEechhhccCh---------hhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 96 LP---------K--ANKYDRIISCGMIEHVGH---------DYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 96 ~~---------~--~~~fD~V~~~~~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
.. . ...+|+|++..+....++ +-....+.-+...|+|||.+++-.+.
T Consensus 75 ~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 75 PENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp EEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred hhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 21 1 268999999874332221 11233445556789999999885544
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.6e-06 Score=74.41 Aligned_cols=116 Identities=25% Similarity=0.331 Sum_probs=90.8
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cC--------------------------------C-------EEEEE
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TG--------------------------------C-------KYTGI 63 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~--------------------------------~-------~v~gv 63 (272)
..|+..-+..++..++|--||+|.+.+..|.. .+ + .++|+
T Consensus 181 aAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~ 260 (381)
T COG0116 181 AAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGS 260 (381)
T ss_pred HHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEe
Confidence 45566666778889999999999999988775 21 1 37799
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC-CCccEEEEechhh-ccChh-----hHHHHHHHHHhcCccCcEE
Q 024096 64 TLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA-NKYDRIISCGMIE-HVGHD-----YMEEFFGCCESLLATHGLL 136 (272)
Q Consensus 64 d~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~-~~fD~V~~~~~~~-~~~~~-----~~~~~l~~~~~~LkpgG~l 136 (272)
|+++.+++.|+.|++..|+.+.|+|.++|+..+.++ +.+|+|+|+...- -++.+ -...+.+.+.+.++--++.
T Consensus 261 Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~ 340 (381)
T COG0116 261 DIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRY 340 (381)
T ss_pred cCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceE
Confidence 999999999999999999999999999999999855 8999999997532 12222 1234556666777777788
Q ss_pred EEE
Q 024096 137 VLQ 139 (272)
Q Consensus 137 ~i~ 139 (272)
+++
T Consensus 341 v~t 343 (381)
T COG0116 341 VFT 343 (381)
T ss_pred EEE
Confidence 774
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.7e-08 Score=82.69 Aligned_cols=101 Identities=23% Similarity=0.287 Sum_probs=82.7
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272)
..+..++|+|||.|-... ..+.+.++|.|++...+..+++. | ......+|+..+| .+.+||.+++..++
T Consensus 44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~~p~~~~s~d~~lsiavi 113 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALKLPFREESFDAALSIAVI 113 (293)
T ss_pred CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC----C---CceeehhhhhcCCCCCCccccchhhhhh
Confidence 458899999999986643 23678899999999888887754 1 2268899999999 77899999999999
Q ss_pred hccChhh-HHHHHHHHHhcCccCcEEEEEeecC
Q 024096 112 EHVGHDY-MEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 112 ~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
||+.... ...+++++.+.|+|||...+..+..
T Consensus 114 hhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 114 HHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 9997654 4679999999999999988866554
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2e-07 Score=72.76 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=81.5
Q ss_pred CEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhccC
Q 024096 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVG 115 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~ 115 (272)
+.+.|+|+|+|.++...+.. ..+|++++.+|...+.|.+++...|. .+++++.+|+.+... +..|+|+|...-..+-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF-ENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc-cccceeHHHHhhHHhh
Confidence 68999999999999988775 66999999999999999999877776 589999999999885 6789998853322233
Q ss_pred hhhHHHHHHHHHhcCccCcEEEE
Q 024096 116 HDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 116 ~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
++..-.+++.+...||.++.++=
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cccccHHHHHHHHHhhcCCcccc
Confidence 34455678888889999998874
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.1e-06 Score=67.73 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=77.3
Q ss_pred HHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCC
Q 024096 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANK 101 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~ 101 (272)
+.+.+++|.+||-+|..+|....+++.- +...|+++|.|+......-..+++. .|+-.+.+|+.... .-+.
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccccc
Confidence 4466889999999999999999999987 4679999999997766665555555 58999999987654 3368
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
.|+|++.-. .+ +...-++.++...||+||.+++..
T Consensus 144 VDvI~~DVa---Qp-~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 144 VDVIFQDVA---QP-DQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEEE-S---ST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEecCC---Ch-HHHHHHHHHHHhhccCCcEEEEEE
Confidence 999998632 11 345678888889999999999853
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.5e-06 Score=73.58 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC
Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK 98 (272)
Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 98 (272)
..+..+.+++.+++.++..|||+|+|.|.++..|++. +.+++++|+++...+..++... ..++++++.+|+.++..
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDL 90 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCG
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhcccc
Confidence 3456788999999889999999999999999999987 5899999999999999888765 23689999999999872
Q ss_pred C----CCccEEEEechhhccChhhHHHHHHHHHhcCcc
Q 024096 99 A----NKYDRIISCGMIEHVGHDYMEEFFGCCESLLAT 132 (272)
Q Consensus 99 ~----~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkp 132 (272)
. +.-..|+++-.. +++ ..++.++...-+.
T Consensus 91 ~~~~~~~~~~vv~NlPy-~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 91 YDLLKNQPLLVVGNLPY-NIS----SPILRKLLELYRF 123 (262)
T ss_dssp GGHCSSSEEEEEEEETG-TGH----HHHHHHHHHHGGG
T ss_pred HHhhcCCceEEEEEecc-cch----HHHHHHHhhcccc
Confidence 2 356677776554 442 4566666553333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.5e-06 Score=68.68 Aligned_cols=120 Identities=19% Similarity=0.226 Sum_probs=84.2
Q ss_pred CEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEEEechh
Q 024096 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRIISCGMI 111 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V~~~~~~ 111 (272)
.++|||||=+.....- ...-..|+.||+++ ..-.+.+.|+.+.| +.++||+|.+..++
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns----------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNS----------------QHPGILQQDFMERPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCC----------------CCCCceeeccccCCCCCCcccceeEEEEEEEE
Confidence 6999999965443322 12234699999976 13467888998876 35799999999999
Q ss_pred hccChh-hHHHHHHHHHhcCccCcE-----EEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcE
Q 024096 112 EHVGHD-YMEEFFGCCESLLATHGL-----LVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLC 185 (272)
Q Consensus 112 ~~~~~~-~~~~~l~~~~~~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~ 185 (272)
..+|+. ..-+.++++.+.|+|+|. +++..+ ... ..+..+.+.+.+. .+.+.-||.
T Consensus 115 NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP---~~C---------------v~NSRy~~~~~l~-~im~~LGf~ 175 (219)
T PF11968_consen 115 NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP---LPC---------------VTNSRYMTEERLR-EIMESLGFT 175 (219)
T ss_pred eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC---chH---------------hhcccccCHHHHH-HHHHhCCcE
Confidence 999854 567899999999999999 777422 211 0123344556665 445569998
Q ss_pred EEEEEec
Q 024096 186 VEHLENI 192 (272)
Q Consensus 186 v~~~~~~ 192 (272)
.+..+..
T Consensus 176 ~~~~~~~ 182 (219)
T PF11968_consen 176 RVKYKKS 182 (219)
T ss_pred EEEEEec
Confidence 8776553
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.6e-06 Score=71.79 Aligned_cols=104 Identities=23% Similarity=0.324 Sum_probs=66.6
Q ss_pred CCEEEEECCCchHHH-HHHHHc--cCCEEEEEcCCHHHHHHHHHHHH-HcCCCCCeEEEEcccCCCC-CCCCccEEEEec
Q 024096 35 GQEVLDIGCGWGTLA-IEIVKQ--TGCKYTGITLSEEQLKYAEIKVR-EAGLQDHIRFYLCDYRQLP-KANKYDRIISCG 109 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~-~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~-~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~ 109 (272)
+.+|+=||||.=-++ +.+++. .+..++++|+++..++.+++..+ ..|+..++.|+++|..+.. .-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 359999999976655 445544 46789999999999999999887 5677789999999998776 347899999876
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
... +..++...+++++.+.++||..+++-
T Consensus 201 lVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 544 22245689999999999999999874
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.5e-06 Score=66.69 Aligned_cols=102 Identities=18% Similarity=0.190 Sum_probs=82.6
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEec
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCG 109 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~ 109 (272)
..|.+||++|-|.|.....+.+++..+=+.+|..|......++..-. -.++|.++.+-.++.. +++.||-|+-..
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~--ek~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR--EKENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc--cccceEEEecchHhhhccccccCcceeEeec
Confidence 67889999999999999988887555667789999988887765311 1357888888877754 678899999876
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
--++. ++...+.+.+.++|||+|++-+
T Consensus 178 y~e~y--Edl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 178 YSELY--EDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred hhhHH--HHHHHHHHHHhhhcCCCceEEE
Confidence 65777 7889999999999999999876
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-07 Score=67.96 Aligned_cols=98 Identities=20% Similarity=0.185 Sum_probs=45.8
Q ss_pred EEECCCchHHHHHHHHc--cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEechh
Q 024096 39 LDIGCGWGTLAIEIVKQ--TG--CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCGMI 111 (272)
Q Consensus 39 LDiG~G~G~~~~~l~~~--~~--~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~~~ 111 (272)
||+|+..|..+..+++. .. .+++++|..+. .+..++.+++.++.++++++.++..+.- ..+++|+|+....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 69999999999888875 22 37999999985 3344445555566678999999986643 3479999999763
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
|-. +.....++.+...|+|||.+++.+
T Consensus 79 -H~~-~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 -HSY-EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---H-HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CCH-HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 221 345678899999999999999865
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.4e-06 Score=67.30 Aligned_cols=108 Identities=18% Similarity=0.281 Sum_probs=83.2
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272)
+++.+.=..-.|++|||+|+|+|..++..++.....|+..|+.|.....++-|.+.+|. .+.+...|... .+..||
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g--~~~~~D 144 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG--SPPAFD 144 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC--CCccee
Confidence 44444444557899999999999999988887556899999999999999999999885 68888888766 347899
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+|+...++..-+ .-..++. +.+.|+..|..++
T Consensus 145 l~LagDlfy~~~--~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 145 LLLAGDLFYNHT--EADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred EEEeeceecCch--HHHHHHH-HHHHHHhCCCEEE
Confidence 999999887653 2345666 6666666665554
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.7e-06 Score=65.37 Aligned_cols=109 Identities=20% Similarity=0.202 Sum_probs=77.3
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 22 KVSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 22 ~~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
++..|.++.. ++++..|+|+|+-+|+++..+++.. +..|+++|+.|- ....++.++++|+..-+
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~------------~~~~~V~~iq~d~~~~~~ 99 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM------------KPIPGVIFLQGDITDEDT 99 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc------------ccCCCceEEeeeccCccH
Confidence 3455666665 4688999999999999999999883 345999999772 12246999999998765
Q ss_pred --------CCCCccEEEEechh--------hccChhhH-HHHHHHHHhcCccCcEEEEEeec
Q 024096 98 --------KANKYDRIISCGMI--------EHVGHDYM-EEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 98 --------~~~~fD~V~~~~~~--------~~~~~~~~-~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
....+|+|+|...- +|.-...+ ...++-+..+|+|||.+++-.+-
T Consensus 100 ~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 100 LEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 23457999986533 22211111 34566667899999999987665
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.7e-06 Score=70.25 Aligned_cols=90 Identities=13% Similarity=0.184 Sum_probs=76.3
Q ss_pred HHHHHHcCCCCCC--EEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc------C--CCCCeEEEEccc
Q 024096 24 SVLIEKARVSKGQ--EVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA------G--LQDHIRFYLCDY 93 (272)
Q Consensus 24 ~~l~~~l~~~~~~--~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~------g--~~~~i~~~~~d~ 93 (272)
+.+++.+++++|. +|||+-+|+|..++.++.. |++|+++|-++......++++... + +..+++++++|.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 6788888888888 9999999999999999997 889999999999999999888774 2 225789999998
Q ss_pred CCCC--CCCCccEEEEechhhcc
Q 024096 94 RQLP--KANKYDRIISCGMIEHV 114 (272)
Q Consensus 94 ~~~~--~~~~fD~V~~~~~~~~~ 114 (272)
.+.. ..+.||+|+...++.|-
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCCC
Confidence 7654 33579999999988874
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-07 Score=75.10 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=70.1
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhc
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH 113 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~ 113 (272)
.+.++||+|+|.|-.+..++.. -.+|++.|+|..|+...+.. + ..+... .+-...+-+||+|.|.+.+.-
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~----ynVl~~-~ew~~t~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----N----YNVLTE-IEWLQTDVKLDLILCLNLLDR 181 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----C----Cceeee-hhhhhcCceeehHHHHHHHHh
Confidence 3479999999999999988875 34799999999988877654 2 222211 111113357999999988876
Q ss_pred cChhhHHHHHHHHHhcCcc-CcEEEEE
Q 024096 114 VGHDYMEEFFGCCESLLAT-HGLLVLQ 139 (272)
Q Consensus 114 ~~~~~~~~~l~~~~~~Lkp-gG~l~i~ 139 (272)
. .++-.+++.++.+|+| +|+++++
T Consensus 182 c--~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 182 C--FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred h--cChHHHHHHHHHHhccCCCcEEEE
Confidence 5 4568999999999999 8998874
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.3e-06 Score=62.31 Aligned_cols=123 Identities=15% Similarity=0.219 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC
Q 024096 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL 96 (272)
Q Consensus 17 ~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 96 (272)
.|..+.+.++++.+.-.+..+.+|+|+|.|.+-...++..-...+|+|++|-.+.+++-..-..|+.+.+.|...|+.+.
T Consensus 55 pAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 55 PATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred CccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 35566677788888877778999999999999988888633578999999999999999888889988999999999887
Q ss_pred CCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 97 PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 97 ~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
.. ..|..|+...+-..+ ..+..++..-+..+.+++..-+..|.
T Consensus 135 dl-~dy~~vviFgaes~m-----~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 135 DL-RDYRNVVIFGAESVM-----PDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred cc-cccceEEEeehHHHH-----hhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 62 335555554443333 45666677778888888875555444
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.1e-05 Score=62.42 Aligned_cols=106 Identities=18% Similarity=0.160 Sum_probs=83.0
Q ss_pred HHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCc
Q 024096 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKY 102 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~f 102 (272)
+.+++++|.+||=+|..+|....+++.- ....++++|.|+.........+++. +|+--+.+|+.... --+..
T Consensus 70 ~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 70 KNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred ccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccc
Confidence 4467889999999999999999999987 5578999999998877766666655 48888999987654 34679
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
|+|+..-+ -++...-+..++...||+||+++++.
T Consensus 147 Dviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 147 DVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 99997521 11334567888899999999887743
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-05 Score=60.54 Aligned_cols=102 Identities=31% Similarity=0.436 Sum_probs=72.8
Q ss_pred EEEECCCchHHHHHHHHccC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC--CC-CC-CCccEEEEechh
Q 024096 38 VLDIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ--LP-KA-NKYDRIISCGMI 111 (272)
Q Consensus 38 vLDiG~G~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~--~~-~~-~~fD~V~~~~~~ 111 (272)
++|+|||+|... .+..... ..++++|+++.++..++......+. ..+.+...|... .+ .. ..||++.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 3444322 4899999999999885554432111 116888888776 55 33 489999444444
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeecCC
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272)
++.. ....+.++.+.++|+|.+++......
T Consensus 130 ~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HLLP---PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hcCC---HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 4442 67899999999999999998766543
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.8e-06 Score=74.15 Aligned_cols=112 Identities=15% Similarity=0.215 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---C
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---K 98 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~ 98 (272)
.+..+-+++.+..+..+||+.||+|.++..+++. -.+|+|+|++++.++.|+.++..+|+. |.+|+++-++++- .
T Consensus 371 Lys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~ 448 (534)
T KOG2187|consen 371 LYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFPSLL 448 (534)
T ss_pred HHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccchhc
Confidence 4566778888999999999999999999999986 679999999999999999999999985 8999999555543 1
Q ss_pred C---CCccEEE-EechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 99 A---NKYDRII-SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~---~~fD~V~-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
. ++=++|. +...=.-+ . ..+++.+.+.-++--.++++
T Consensus 449 ~~~~~~~~~v~iiDPpR~Gl--h--~~~ik~l~~~~~~~rlvyvS 489 (534)
T KOG2187|consen 449 TPCCDSETLVAIIDPPRKGL--H--MKVIKALRAYKNPRRLVYVS 489 (534)
T ss_pred ccCCCCCceEEEECCCcccc--c--HHHHHHHHhccCccceEEEE
Confidence 1 2334333 33221111 1 24555555555566666664
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.5e-06 Score=69.41 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCC-----CCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEccc
Q 024096 21 RKVSVLIEKARVSK-----GQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA-GLQDHIRFYLCDY 93 (272)
Q Consensus 21 ~~~~~l~~~l~~~~-----~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~-g~~~~i~~~~~d~ 93 (272)
+.+.++.+.+.... .-++||||||...+=-.|+.+ .+.+++|.|+++..++.|++++..+ ++.++|+++...-
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~ 163 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKN 163 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC
Confidence 44455656555322 458999999977654334434 8999999999999999999999999 8999999876642
Q ss_pred CC-----CC-CCCCccEEEEechhhccC
Q 024096 94 RQ-----LP-KANKYDRIISCGMIEHVG 115 (272)
Q Consensus 94 ~~-----~~-~~~~fD~V~~~~~~~~~~ 115 (272)
.. +. ..+.||+.+|+..++.-.
T Consensus 164 ~~~i~~~i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 164 PDNIFDGIIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp T-SSTTTSTT--S-EEEEEE-----SS-
T ss_pred ccccchhhhcccceeeEEecCCccccCh
Confidence 22 11 346899999999988763
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-05 Score=74.90 Aligned_cols=79 Identities=18% Similarity=0.171 Sum_probs=58.7
Q ss_pred CCCEEEEECCCchHHHHHHHHc-c--------CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------C
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-T--------GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------K 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~--------~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------~ 98 (272)
.+.+|||.|||+|.+...++.. . ...++|+|+++..+..++.++...+. ..+.+.+.|..... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 4569999999999999888765 2 15789999999999999998876651 23456666643321 2
Q ss_pred CCCccEEEEechhhc
Q 024096 99 ANKYDRIISCGMIEH 113 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~ 113 (272)
.+.||+|+++....-
T Consensus 110 ~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 110 LDLFDIVITNPPYGR 124 (524)
T ss_pred cCcccEEEeCCCccc
Confidence 358999999986653
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=69.62 Aligned_cols=97 Identities=11% Similarity=0.150 Sum_probs=70.1
Q ss_pred HHHHHHHHcC--------CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc
Q 024096 22 KVSVLIEKAR--------VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93 (272)
Q Consensus 22 ~~~~l~~~l~--------~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~ 93 (272)
++..++..+. +.+|.++||+||++|+++..+.++ +.+|++||..+ +.. .+.. .++|....+|.
T Consensus 191 KLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l~~----~L~~---~~~V~h~~~d~ 261 (357)
T PRK11760 191 KLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-MAQ----SLMD---TGQVEHLRADG 261 (357)
T ss_pred HHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-cCH----hhhC---CCCEEEEeccC
Confidence 4555555544 358999999999999999999997 77999999654 221 1222 25899999987
Q ss_pred CCCCC-CCCccEEEEechhhccChhhHHHHHHHHHhcCccC
Q 024096 94 RQLPK-ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH 133 (272)
Q Consensus 94 ~~~~~-~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 133 (272)
....+ .+.+|.|+|.-+ +.+..+.+-+.++|..|
T Consensus 262 fr~~p~~~~vDwvVcDmv------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 262 FKFRPPRKNVDWLVCDMV------EKPARVAELMAQWLVNG 296 (357)
T ss_pred cccCCCCCCCCEEEEecc------cCHHHHHHHHHHHHhcC
Confidence 66654 678999999643 23456667777777666
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.4e-05 Score=63.69 Aligned_cols=148 Identities=16% Similarity=0.221 Sum_probs=90.2
Q ss_pred HHHHHHcC--CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 24 SVLIEKAR--VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 24 ~~l~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
+.+++.+. +.+..+|+|||||.--++..+... ++..++|+|++..+++..+..+...+. ...+...|...-++..
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~~~~ 170 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDPPKE 170 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSHTTS
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccCCCC
Confidence 34444433 345789999999999998877766 678999999999999999999988876 4677777887777778
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhc
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 180 (272)
..|+....=+++.+........++-+.. ++ .-.++++.++..-. .+.. |...+...+.+.++.
T Consensus 171 ~~DlaLllK~lp~le~q~~g~g~~ll~~-~~-~~~~vVSfPtrSL~-----gR~~----------gm~~~y~~~fe~~~~ 233 (251)
T PF07091_consen 171 PADLALLLKTLPCLERQRRGAGLELLDA-LR-SPHVVVSFPTRSLG-----GRNK----------GMEQTYSAWFEALAA 233 (251)
T ss_dssp EESEEEEET-HHHHHHHSTTHHHHHHHH-SC-ESEEEEEEES------------T----------THHHCHHHHHHHHCC
T ss_pred CcchhhHHHHHHHHHHHhcchHHHHHHH-hC-CCeEEEeccccccc-----cCcc----------ccccCHHHHHHHhcc
Confidence 8999999888887722211122322222 22 22455554442111 0001 122345556667777
Q ss_pred CCCcEEEEEE
Q 024096 181 SSGLCVEHLE 190 (272)
Q Consensus 181 ~~Gf~v~~~~ 190 (272)
..|..+.+.+
T Consensus 234 ~~~~~~~~~~ 243 (251)
T PF07091_consen 234 ERGWIVDRLT 243 (251)
T ss_dssp TTCEEEEEEE
T ss_pred cCCceeeeee
Confidence 7888865544
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00011 Score=59.24 Aligned_cols=109 Identities=21% Similarity=0.251 Sum_probs=87.4
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANK 101 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~ 101 (272)
..+.+.+. .+.++.||||-.+.+..++.+. +...+++.|+++..++.|.++...+++.+++++..+|....- .++.
T Consensus 8 ~~va~~V~--~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~ 85 (226)
T COG2384 8 TTVANLVK--QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDE 85 (226)
T ss_pred HHHHHHHH--cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCC
Confidence 33444433 4556999999999999999998 567899999999999999999999999999999999975443 5668
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+|+|+..++-- .-...++++-.+.|+.=-++++
T Consensus 86 ~d~ivIAGMGG----~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 86 IDVIVIAGMGG----TLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred cCEEEEeCCcH----HHHHHHHHHhhhhhcCcceEEE
Confidence 99999876544 3456788888887776566776
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.2e-06 Score=62.95 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=77.9
Q ss_pred HHHHHcCCCCCCEEEEECCCchH-HHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC--CCeEEEEcccCCCC---
Q 024096 25 VLIEKARVSKGQEVLDIGCGWGT-LAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQ--DHIRFYLCDYRQLP--- 97 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G~-~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~--~~i~~~~~d~~~~~--- 97 (272)
.+++.-..-.|.+|||+|.|--+ .+..+|.. +...|...|-++..++..++....+... .++.+..-+.....
T Consensus 20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~ 99 (201)
T KOG3201|consen 20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ 99 (201)
T ss_pred HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHH
Confidence 34444444467899999999544 44555555 7789999999999999988776555221 12322222222211
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....||.|++..++..- +....+++.+.+.|+|.|+.++.
T Consensus 100 eq~tFDiIlaADClFfd--E~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 100 EQHTFDIILAADCLFFD--EHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred hhCcccEEEeccchhHH--HHHHHHHHHHHHHhCcccceeEe
Confidence 34689999999887654 55678999999999999997763
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.9e-06 Score=61.90 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=52.1
Q ss_pred EEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 024096 37 EVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272)
Q Consensus 37 ~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272)
++||+|||.|..+..+++. ++.+++++|+++.+.+.++++++.++++ ++.+++..+.+-+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~~~ 61 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGDRD 61 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeCCC
Confidence 4899999999999999987 5568999999999999999999988875 5888888776543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3e-05 Score=68.01 Aligned_cols=116 Identities=18% Similarity=0.184 Sum_probs=90.9
Q ss_pred HcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCcc
Q 024096 29 KARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYD 103 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD 103 (272)
.+...+|.||||+++-.|+-+.++|.. ....|++.|.+...+.....++...|. .+..+...|..++| ...+||
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~~fD 314 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPGSFD 314 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccCcccc
Confidence 355679999999999999988888876 346899999999999999999999998 47888889988776 234899
Q ss_pred EEEEechhhc--cCh------------------hhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 104 RIISCGMIEH--VGH------------------DYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 104 ~V~~~~~~~~--~~~------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
.|.......- +.. .-..+++.....++++||+|+.++.+...
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 9986542221 000 12357888889999999999998877543
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.7e-05 Score=66.73 Aligned_cols=88 Identities=14% Similarity=0.220 Sum_probs=74.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--- 97 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--- 97 (272)
+++.+++.+...++..++|.-+|.|+-+..+++. ++.+|+|+|.++.+++.+++++... .+++.++++++.++.
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHL 85 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHH
Confidence 3577888888889999999999999999999987 5589999999999999999988654 358999999998865
Q ss_pred ---CCCCccEEEEechh
Q 024096 98 ---KANKYDRIISCGMI 111 (272)
Q Consensus 98 ---~~~~fD~V~~~~~~ 111 (272)
..+++|.|+....+
T Consensus 86 ~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 86 DELLVTKIDGILVDLGV 102 (305)
T ss_pred HhcCCCcccEEEEeccC
Confidence 22579999887544
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.8e-06 Score=69.21 Aligned_cols=76 Identities=24% Similarity=0.345 Sum_probs=63.9
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----CCCccEEEEe
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK-----ANKYDRIISC 108 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~-----~~~fD~V~~~ 108 (272)
....|+|.-||.|+.+++.+.. ++.|+++|++|.-+..|+.+++-.|++++|.|++||+.++-. -..+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 4568999999999999999886 889999999999999999999999999999999999987651 1235566655
Q ss_pred ch
Q 024096 109 GM 110 (272)
Q Consensus 109 ~~ 110 (272)
..
T Consensus 173 pp 174 (263)
T KOG2730|consen 173 PP 174 (263)
T ss_pred CC
Confidence 43
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.3e-05 Score=62.35 Aligned_cols=107 Identities=21% Similarity=0.213 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCC-CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCe-EEEEcccCCCC-
Q 024096 21 RKVSVLIEKARV-SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHI-RFYLCDYRQLP- 97 (272)
Q Consensus 21 ~~~~~l~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i-~~~~~d~~~~~- 97 (272)
.++..+++...+ .++..|||+|+-||+++..+.++...+|+++|....++.+--++ .+++ .+...|+..+.
T Consensus 65 ~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~ 138 (245)
T COG1189 65 LKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTP 138 (245)
T ss_pred HHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCH
Confidence 345666777665 46889999999999999999998556899999998888775443 1344 44555666655
Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
..+..|++++.-++.-+ ..++..+..+++|++-++.
T Consensus 139 ~~~~~~~d~~v~DvSFISL-----~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 139 EDFTEKPDLIVIDVSFISL-----KLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HHcccCCCeEEEEeehhhH-----HHHHHHHHHhcCCCceEEE
Confidence 23578899998766644 7899999999999998876
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0054 Score=54.43 Aligned_cols=215 Identities=13% Similarity=0.139 Sum_probs=119.1
Q ss_pred CCEEEEECCCchHHHHHHHHc----------------cCCEEEEEcCCHHHHH-HHHHH--HHH-----------cCCC-
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ----------------TGCKYTGITLSEEQLK-YAEIK--VRE-----------AGLQ- 83 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~----------------~~~~v~gvd~s~~~~~-~a~~~--~~~-----------~g~~- 83 (272)
..+|+|+|||+|.++..+... +..+|..-|+-.+-.. ..+.. ... .+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 568999999999877655321 2356666666322111 11111 000 0100
Q ss_pred CCeEEEEcccCCCC-CCCCccEEEEechhhccCh------------------------------------hhHHHHHHHH
Q 024096 84 DHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGH------------------------------------DYMEEFFGCC 126 (272)
Q Consensus 84 ~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~------------------------------------~~~~~~l~~~ 126 (272)
--+..+.+.+-.-- |.++.++++|..++||++. +|+..+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00222334443322 7789999999999998852 1233455555
Q ss_pred HhcCccCcEEEEEeecCCCCcccccc---Cc--------------chhh-----hhcccCCCCCCCHHHHHHHhhcCCCc
Q 024096 127 ESLLATHGLLVLQFISAPDQCYDEYR---LS--------------PGFI-----KEYIFPGGCLPSLGRVTSAMTSSSGL 184 (272)
Q Consensus 127 ~~~LkpgG~l~i~~~~~~~~~~~~~~---~~--------------~~~~-----~~~~~p~~~~~~~~~~~~~l~~~~Gf 184 (272)
++-|.|||++++.....+........ .. .+.+ ..+-.| .+.|+.+++...+.++.-|
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP-~Y~ps~eEv~~~Ie~~gsF 302 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIP-VYAPSLQDFKEVVEANGSF 302 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCc-ccCCCHHHHHHHHhhcCCE
Confidence 67889999999987766432111000 00 0111 111112 3458899998888888889
Q ss_pred EEEEEEecCccHH----------HHHHHHHHHHHhhHHHHHhccCChHHH-HHHHHHHHHHHHHHhc--CCccEEEEEE
Q 024096 185 CVEHLENIGIHYY----------QTLRCWRKNFMGKQSEILALGFNEKFI-RTWEYYFDYCAASFKS--RIIGDYQIVF 250 (272)
Q Consensus 185 ~v~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~w~~~~~~~~~~f~~--g~~~~~~~~~ 250 (272)
.+..++.+...+. ..-..|...+.+..+.+....|++... ..+..|-...+..... .......+++
T Consensus 303 ~I~~le~~~~~~~~~~~~~~d~~~~g~~~a~~~RA~~E~ll~~HFG~~i~D~lF~r~~~~v~~~~~~~~~~~~~~~~~~ 381 (386)
T PLN02668 303 AIDKLEVFKGGSPLVVNEPDDAAEVGRAMANSCRSVAGVLVDAHIGEELSNELFLRVERRATSHAKELLEKLQFFHIVA 381 (386)
T ss_pred EeeeeEEeeccCcccccCcccHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEE
Confidence 9888876442110 111234444444555555556775543 3577777777766666 6666666554
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.001 Score=58.28 Aligned_cols=216 Identities=15% Similarity=0.158 Sum_probs=107.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-----------------cCCEEEEEcCCHHH-HHHHHH------HHH
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-----------------TGCKYTGITLSEEQ-LKYAEI------KVR 78 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-----------------~~~~v~gvd~s~~~-~~~a~~------~~~ 78 (272)
+..++..-.....-+|+|+||..|..+..+.+. +..+|+--|+-.+- -...+. ...
T Consensus 5 i~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~ 84 (334)
T PF03492_consen 5 IKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLK 84 (334)
T ss_dssp HHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHH
T ss_pred HHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccC
Confidence 334443334455679999999999988876431 11477777763221 111111 111
Q ss_pred HcCCCCCeEEEEcccCCCC-CCCCccEEEEechhhccCh-------------------------------------hhHH
Q 024096 79 EAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGH-------------------------------------DYME 120 (272)
Q Consensus 79 ~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~-------------------------------------~~~~ 120 (272)
..+ +--+..+.+.+-.-- |.++.|+++|..++||++. +|+.
T Consensus 85 ~~~-~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~ 163 (334)
T PF03492_consen 85 KFR-NYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFS 163 (334)
T ss_dssp HTT-SEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHH
T ss_pred CCc-eEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHH
Confidence 111 011344566655433 7899999999999998732 3344
Q ss_pred HHHHHHHhcCccCcEEEEEeecCCCCccccccC------cc---------hhh-----hhcccCCCCCCCHHHHHHHhhc
Q 024096 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRL------SP---------GFI-----KEYIFPGGCLPSLGRVTSAMTS 180 (272)
Q Consensus 121 ~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~------~~---------~~~-----~~~~~p~~~~~~~~~~~~~l~~ 180 (272)
.+|+.=++-|+|||++++.....++........ .. +.+ ..+..| .+.|+.+++...+.+
T Consensus 164 ~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP-~Y~ps~eEv~~~I~~ 242 (334)
T PF03492_consen 164 SFLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIP-IYFPSPEEVRAIIEE 242 (334)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--S-BB---HHHHHHHHHH
T ss_pred HHHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCC-ccCCCHHHHHHHHhc
Confidence 456656678899999999887766622111100 00 011 111112 346888998887877
Q ss_pred CCCcEEEEEEecCc-----cH--------HHHHHHHHHHHHhhHHHHHhccCChHHH-HHHHHHHHHHHHHHhc
Q 024096 181 SSGLCVEHLENIGI-----HY--------YQTLRCWRKNFMGKQSEILALGFNEKFI-RTWEYYFDYCAASFKS 240 (272)
Q Consensus 181 ~~Gf~v~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~w~~~~~~~~~~f~~ 240 (272)
+..|.+..++.+.. .. ...-+.+...+.+..+-+....|+++.. ..|..|....++....
T Consensus 243 ~gsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~v~~~~~~ 316 (334)
T PF03492_consen 243 EGSFEIEKLELFEQPWWSVPDDESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKKVAEHLEK 316 (334)
T ss_dssp HTSEEEEEEEEEEEETCCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEEeecccccchhhhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 88899877766541 10 0122223333333333333334555444 3477676666666544
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.5e-05 Score=64.81 Aligned_cols=109 Identities=24% Similarity=0.206 Sum_probs=81.6
Q ss_pred CCCCEEEEECCCchHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHH--HHHcC----CCCCeEEEEcccCCCC--CCCCcc
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEIK--VREAG----LQDHIRFYLCDYRQLP--KANKYD 103 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~--~~~~g----~~~~i~~~~~d~~~~~--~~~~fD 103 (272)
+...+||-+|.|.|-..+.+.+.| -.+++-+|++|.+++.++.+ ++..+ .+++++++..|+.+.- ..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 345799999999999999999986 46899999999999999943 33221 1458899999987765 457999
Q ss_pred EEEEechhhcc---ChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 104 RIISCGMIEHV---GHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 104 ~V~~~~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
.|+....-..- +.-.-.++..-+.+.|+++|.++++..
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 99986421111 111225678888999999999998643
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.7e-05 Score=58.77 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=76.5
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEechhhccCh---------hhHHHHHHHH
Q 024096 59 KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCGMIEHVGH---------DYMEEFFGCC 126 (272)
Q Consensus 59 ~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~~~~~~~~---------~~~~~~l~~~ 126 (272)
+|+|+|+.++.++..++++.+.++.+++.+++.+-+++. +++++|+++.+.. ++|. +.-...++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 689999999999999999999999889999999988877 3348999988743 2221 2335688999
Q ss_pred HhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecC
Q 024096 127 ESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 127 ~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272)
.++|+|||.+.+..+...+.-.++.. ...++++.+- +..|.|....-+.
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~-----------------av~~~~~~L~-~~~~~V~~~~~~N 127 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESE-----------------AVEEFLASLD-QKEFNVLKYQFIN 127 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHH-----------------HHHHHHHTS--TTTEEEEEEEESS
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHH-----------------HHHHHHHhCC-cceEEEEEEEccC
Confidence 99999999999977664332211111 1233444443 5678887776654
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.8e-05 Score=58.28 Aligned_cols=155 Identities=13% Similarity=0.019 Sum_probs=92.1
Q ss_pred HHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHH----H--HHHHHHHHcCCCCCeEEEEcccCCC
Q 024096 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQL----K--YAEIKVREAGLQDHIRFYLCDYRQL 96 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~----~--~a~~~~~~~g~~~~i~~~~~d~~~~ 96 (272)
.++...++++|++|+|+=.|.|.++..++.. +...|+++-..+... + ..+...++.. ..|++.+-.+...+
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~-~aN~e~~~~~~~A~ 117 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV-YANVEVIGKPLVAL 117 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh-hhhhhhhCCccccc
Confidence 3445556889999999999999999999876 445788776554421 1 1111111111 23566666666555
Q ss_pred CCCCCccEEEEechhhcc-----ChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCH
Q 024096 97 PKANKYDRIISCGMIEHV-----GHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSL 171 (272)
Q Consensus 97 ~~~~~fD~V~~~~~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 171 (272)
.+.+..|+++....-|-+ .......+...+++.|||||.+++.+-......... ... . .+....
T Consensus 118 ~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~--dt~--~-------~~ri~~ 186 (238)
T COG4798 118 GAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS--DTI--T-------LHRIDP 186 (238)
T ss_pred CCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh--hhh--h-------hcccCh
Confidence 555677777764433322 223456789999999999999999765532211100 000 0 122334
Q ss_pred HHHHHHhhcCCCcEEEEEEec
Q 024096 172 GRVTSAMTSSSGLCVEHLENI 192 (272)
Q Consensus 172 ~~~~~~l~~~~Gf~v~~~~~~ 192 (272)
....+. .+.+||++.....+
T Consensus 187 a~V~a~-veaaGFkl~aeS~i 206 (238)
T COG4798 187 AVVIAE-VEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHH-HHhhcceeeeeehh
Confidence 444433 44699988765544
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00033 Score=59.32 Aligned_cols=149 Identities=21% Similarity=0.263 Sum_probs=92.5
Q ss_pred CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc----------------------------------
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA---------------------------------- 80 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~---------------------------------- 80 (272)
..+||--|||.|.++..|+.. |-.+-|-|.|--|.-...-.+...
T Consensus 151 ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 568999999999999999986 667777788877754433322110
Q ss_pred -----CCCCCeEEEEcccCCCCC----CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccc
Q 024096 81 -----GLQDHIRFYLCDYRQLPK----ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEY 151 (272)
Q Consensus 81 -----g~~~~i~~~~~d~~~~~~----~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 151 (272)
+..+......||+.+.-+ .+.||+|+.++-+... ++..++++.+..+|||||+.+=.-+.. +..
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiNlGPLl----YHF- 302 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWINLGPLL----YHF- 302 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEecccee----eec-
Confidence 111123334566665442 2479999999877766 678899999999999999987421110 000
Q ss_pred cCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccH
Q 024096 152 RLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHY 196 (272)
Q Consensus 152 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~ 196 (272)
......-+. .+-=++.+++. .+.+..||+++..+.+...|
T Consensus 303 ~d~~g~~~~----~siEls~edl~-~v~~~~GF~~~ke~~Idt~Y 342 (369)
T KOG2798|consen 303 EDTHGVENE----MSIELSLEDLK-RVASHRGFEVEKERGIDTTY 342 (369)
T ss_pred cCCCCCccc----ccccccHHHHH-HHHHhcCcEEEEeeeeeccc
Confidence 000000000 01124667776 45668999998776554444
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.9e-05 Score=59.19 Aligned_cols=106 Identities=15% Similarity=0.252 Sum_probs=73.3
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC------CCCCeEEEEcccCCCCC----CCCc
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAG------LQDHIRFYLCDYRQLPK----ANKY 102 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g------~~~~i~~~~~d~~~~~~----~~~f 102 (272)
..-.+.|||||-|++...|+.. |+.-+.|.||-....++.+++++... ...++.+...+.....+ -++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 3357999999999999999988 88889999999999999999887653 22456777666555431 1233
Q ss_pred cEEEEechhhccChh------hHHHHHHHHHhcCccCcEEEEE
Q 024096 103 DRIISCGMIEHVGHD------YMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 103 D~V~~~~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+-.+....-.|+-.. .-..++.+..-+|++||.++..
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti 182 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI 182 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence 333333333333100 0135788889999999999864
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0001 Score=60.62 Aligned_cols=90 Identities=21% Similarity=0.227 Sum_probs=56.4
Q ss_pred HHHHHHcCCCCCC--EEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHH---HHHcCCC-----CCeEEEEccc
Q 024096 24 SVLIEKARVSKGQ--EVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIK---VREAGLQ-----DHIRFYLCDY 93 (272)
Q Consensus 24 ~~l~~~l~~~~~~--~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~---~~~~g~~-----~~i~~~~~d~ 93 (272)
+.+++.++++++. +|||.-+|.|.-+..++.. |++|+++|-||-.....+.- ....... .+++++++|.
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 5677888887774 9999999999999999875 89999999999876555433 3222111 3799999998
Q ss_pred CCCC--CCCCccEEEEechhhcc
Q 024096 94 RQLP--KANKYDRIISCGMIEHV 114 (272)
Q Consensus 94 ~~~~--~~~~fD~V~~~~~~~~~ 114 (272)
.++- ++++||+|+...++.+-
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~~ 164 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPER 164 (234)
T ss_dssp CCHCCCHSS--SEEEE--S----
T ss_pred HHHHhhcCCCCCEEEECCCCCCc
Confidence 8754 46899999999998874
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00018 Score=61.84 Aligned_cols=113 Identities=20% Similarity=0.164 Sum_probs=78.3
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEE----EEcccCCCCCCCCccEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRF----YLCDYRQLPKANKYDRII 106 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~----~~~d~~~~~~~~~fD~V~ 106 (272)
....+|||+|.|.|.....+-.- |. ..++.++.|+...+........... ..... ++.|-..++..+.|++|+
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp~ad~ytl~i 190 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLPAADLYTLAI 190 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCCccceeehhh
Confidence 35568999999999876665544 44 3678888999887777665544432 22333 334444455567888888
Q ss_pred EechhhccChh-hHHHHHHHHHhcCccCcEEEEEeecCCCC
Q 024096 107 SCGMIEHVGHD-YMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272)
Q Consensus 107 ~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272)
...-+-+.+.+ .+...++.+..++.|||.+++.+...|..
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 87766666543 34458999999999999999987776554
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00047 Score=54.19 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=66.4
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-ccCCCC---------CC
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-DYRQLP---------KA 99 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~~~---------~~ 99 (272)
+.|+++|||+||.+|.++....++ +...|.|+|+-+- ..+..+.++.+ |+.+.. +.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~------------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI------------EPPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec------------cCCCCcccccccccCCHHHHHHHHHhCCC
Confidence 468999999999999999988887 6789999998441 11234555555 665432 45
Q ss_pred CCccEEEEechhhccCh--hhHHHHH-------HHHHhcCccCcEEEEEeecCCC
Q 024096 100 NKYDRIISCGMIEHVGH--DYMEEFF-------GCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~--~~~~~~l-------~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
...|+|+|...-..-+. .|-...+ .-....++|+|.++.-.+...+
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 68999998643211111 1112223 3334678899999987776443
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00013 Score=64.30 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=61.1
Q ss_pred CEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEe
Q 024096 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISC 108 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~ 108 (272)
..|||||+|+|.++...++..+-.|+++|.-..|.+.|+....++|+.++|.++..-..++. +..+.|+++..
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e 142 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVRE 142 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHh
Confidence 47999999999999988887556899999999999999999999999999999987777665 23446666543
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.022 Score=46.99 Aligned_cols=108 Identities=18% Similarity=0.237 Sum_probs=65.7
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-CC--C
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-PK--A 99 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~~--~ 99 (272)
..+.++.++ .|.+||=+|=.-- .++.++.. ...+|+.+|+++..++..++.+++.|++ ++.++.|+.+. |+ .
T Consensus 35 ~~~~~~gdL-~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~ 110 (243)
T PF01861_consen 35 ALMAERGDL-EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELR 110 (243)
T ss_dssp HHHHHTT-S-TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTS
T ss_pred HHHHhcCcc-cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHh
Confidence 345555443 5789999995432 23333332 5789999999999999999999999984 99999998774 32 3
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCc-EEEE
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHG-LLVL 138 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~i 138 (272)
++||++++...-- . +-..-++.+....||..| ..++
T Consensus 111 ~~fD~f~TDPPyT-~--~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 111 GKFDVFFTDPPYT-P--EGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp S-BSEEEE---SS-H--HHHHHHHHHHHHTB-STT-EEEE
T ss_pred cCCCEEEeCCCCC-H--HHHHHHHHHHHHHhCCCCceEEE
Confidence 8999999976422 2 455789999999999777 4444
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0015 Score=56.85 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=83.6
Q ss_pred HcCCCCCCEEEEECCCchHHHHHHHHc-cCC----EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------
Q 024096 29 KARVSKGQEVLDIGCGWGTLAIEIVKQ-TGC----KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------ 97 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~----~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------ 97 (272)
.|+++|+++|||+++-.|+-+..+.+. ... .+++-|.++.........+..... .++.+...|+...+
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceecccccccc
Confidence 456789999999999999999888876 322 899999999888887777754433 35666666665554
Q ss_pred ----CCCCccEEEEech------hhccCh---------------hhHHHHHHHHHhcCccCcEEEEEeecCCCC
Q 024096 98 ----KANKYDRIISCGM------IEHVGH---------------DYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272)
Q Consensus 98 ----~~~~fD~V~~~~~------~~~~~~---------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272)
....||.|++.-. +.+.++ .-...++.+..++||+||+++.++.+....
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi 302 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI 302 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch
Confidence 1247999987531 111110 112458889999999999999988775543
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.49 E-value=7e-05 Score=67.37 Aligned_cols=99 Identities=18% Similarity=0.360 Sum_probs=65.7
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCC--HHHHHHHHHHHHHcCCCCCeEEEEccc-CCCC-CCCCccEEEEec
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS--EEQLKYAEIKVREAGLQDHIRFYLCDY-RQLP-KANKYDRIISCG 109 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s--~~~~~~a~~~~~~~g~~~~i~~~~~d~-~~~~-~~~~fD~V~~~~ 109 (272)
.=..|+|+.+|.|+++..|.+. ..-|.-+-++ +..+.. +-..|+ |-.++ |. +.++ -+..||+|.+..
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~~~~ntL~v----IydRGL---IG~yh-DWCE~fsTYPRTYDLlHA~~ 435 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDD-PVWVMNVVPVSGPNTLPV----IYDRGL---IGVYH-DWCEAFSTYPRTYDLLHADG 435 (506)
T ss_pred ceeeeeeecccccHHHHHhccC-CceEEEecccCCCCcchh----hhhccc---chhcc-chhhccCCCCcchhheehhh
Confidence 3369999999999999999876 4333333222 222222 223343 22222 32 2333 458999999999
Q ss_pred hhhccChh-hHHHHHHHHHhcCccCcEEEEEee
Q 024096 110 MIEHVGHD-YMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 110 ~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
++....+. ++..++-++.|+|+|+|.++|.+.
T Consensus 436 lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 436 LFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 88876433 567899999999999999998544
|
; GO: 0008168 methyltransferase activity |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00069 Score=60.87 Aligned_cols=106 Identities=18% Similarity=0.287 Sum_probs=84.0
Q ss_pred CCC-EEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh
Q 024096 34 KGQ-EVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272)
Q Consensus 34 ~~~-~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272)
+-. ++|-+|||.-.++..+-+-....|+.+|+|+..++.+...... . ..-..+...|+..+. ++++||+|+-.+.+
T Consensus 47 p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~-~~~~~~~~~d~~~l~fedESFdiVIdkGtl 124 (482)
T KOG2352|consen 47 PSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-E-RPEMQMVEMDMDQLVFEDESFDIVIDKGTL 124 (482)
T ss_pred hhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-C-CcceEEEEecchhccCCCcceeEEEecCcc
Confidence 444 9999999999888888776446899999999988887766431 1 235789999999988 88999999999998
Q ss_pred hccChh--------hHHHHHHHHHhcCccCcEEEEEee
Q 024096 112 EHVGHD--------YMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 112 ~~~~~~--------~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
+++-.. .....+.+++++|++||+++....
T Consensus 125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 886211 224568899999999999887655
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00039 Score=56.76 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=75.3
Q ss_pred HHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCC
Q 024096 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANK 101 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~ 101 (272)
+.+.++||.+||-+|+++|..-.++..- +..-|+++|.|+..-......+++. .||--+..|+.... .-..
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRmlVgm 226 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRMLVGM 226 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeeeeee
Confidence 5566899999999999999988888876 5678999999986544333333332 46777778876543 2357
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
.|+|++.-. .| +....+.-+....||+||.++++.
T Consensus 227 VDvIFaDva---qp-dq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 227 VDVIFADVA---QP-DQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred EEEEeccCC---Cc-hhhhhhhhhhhhhhccCCeEEEEE
Confidence 888887421 11 223445667889999999999854
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0025 Score=55.49 Aligned_cols=100 Identities=28% Similarity=0.282 Sum_probs=71.9
Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-cCCCC-CCCCcc
Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD-YRQLP-KANKYD 103 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d-~~~~~-~~~~fD 103 (272)
++....+||++|+=+|+| .|+.+.++++..+++|+++|.+++-.+.|++. | ...++... ....+ -.+.||
T Consensus 159 lk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----G---Ad~~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----G---ADHVINSSDSDALEAVKEIAD 231 (339)
T ss_pred hhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----C---CcEEEEcCCchhhHHhHhhCc
Confidence 444678899999999988 56788888987689999999999999988876 3 23445433 22222 123499
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+|+..-. ...+....+.|+++|++++.-..
T Consensus 232 ~ii~tv~---------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 232 AIIDTVG---------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEEECCC---------hhhHHHHHHHHhcCCEEEEECCC
Confidence 9998533 34556667788999999985443
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00035 Score=56.31 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=59.2
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-----TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-----~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
..++-++. ++.|+|+|.-.|+.+.++|.. ..++|+|+|++.... .+..++...+.++|++++||..+..
T Consensus 25 qeli~~~k---Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~--~~~a~e~hp~~~rI~~i~Gds~d~~~ 99 (206)
T PF04989_consen 25 QELIWELK---PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH--NRKAIESHPMSPRITFIQGDSIDPEI 99 (206)
T ss_dssp HHHHHHH-----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHH
T ss_pred HHHHHHhC---CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh--chHHHhhccccCceEEEECCCCCHHH
Confidence 44444433 469999999999998888763 347999999953222 2222333345579999999987654
Q ss_pred --C----CCCcc--EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 98 --K----ANKYD--RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 98 --~----~~~fD--~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
. ....+ +|+- .+ +|.. +.....|+....++++|+++++.|..
T Consensus 100 ~~~v~~~~~~~~~vlVil-Ds-~H~~-~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 100 VDQVRELASPPHPVLVIL-DS-SHTH-EHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp HHTSGSS----SSEEEEE-SS------SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred HHHHHHhhccCCceEEEE-CC-CccH-HHHHHHHHHhCccCCCCCEEEEEecc
Confidence 1 11233 3333 33 3321 34567788899999999999986554
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0039 Score=50.25 Aligned_cols=116 Identities=11% Similarity=0.084 Sum_probs=69.5
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-c--CCEEEEEcCCHHHHHHHHHHHHHc--------------------
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-T--GCKYTGITLSEEQLKYAEIKVREA-------------------- 80 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~--~~~v~gvd~s~~~~~~a~~~~~~~-------------------- 80 (272)
.+.+..+.-..+-++.|-+||.|.+..-+.-. . =..|++.|+++.+++.|++|+...
T Consensus 41 qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~ 120 (246)
T PF11599_consen 41 QRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYG 120 (246)
T ss_dssp HHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcC
Confidence 44444444456679999999999987766543 1 247999999999999999976321
Q ss_pred ---------------------CCCCCeEEEEcccCCCC------CCCCccEEEEechhhcc-------ChhhHHHHHHHH
Q 024096 81 ---------------------GLQDHIRFYLCDYRQLP------KANKYDRIISCGMIEHV-------GHDYMEEFFGCC 126 (272)
Q Consensus 81 ---------------------g~~~~i~~~~~d~~~~~------~~~~fD~V~~~~~~~~~-------~~~~~~~~l~~~ 126 (272)
|-.......+.|+.+.. .....|+|+..-..-++ +.....++++.+
T Consensus 121 kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l 200 (246)
T PF11599_consen 121 KPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSL 200 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHH
Confidence 22223678888887722 33456999987544333 223457899999
Q ss_pred HhcCccCcEEEEE
Q 024096 127 ESLLATHGLLVLQ 139 (272)
Q Consensus 127 ~~~LkpgG~l~i~ 139 (272)
+.+|.++++++++
T Consensus 201 ~~vLp~~sVV~v~ 213 (246)
T PF11599_consen 201 APVLPERSVVAVS 213 (246)
T ss_dssp HCCS-TT-EEEEE
T ss_pred HhhCCCCcEEEEe
Confidence 9999666666663
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0035 Score=57.90 Aligned_cols=115 Identities=15% Similarity=0.197 Sum_probs=85.7
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc-----CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT-----GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-----~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
+.|++.+...+..+|.|..||+|++.....+.. ...++|.|+++.....++.++--+|....+...++|...-|
T Consensus 176 ~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~ 255 (489)
T COG0286 176 ELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPK 255 (489)
T ss_pred HHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCc
Confidence 456666666677899999999999887766652 26799999999999999999988887545677777765554
Q ss_pred C-----CCCccEEEEechhh---cc-------------------C-hhhHHHHHHHHHhcCccCcEEEE
Q 024096 98 K-----ANKYDRIISCGMIE---HV-------------------G-HDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 98 ~-----~~~fD~V~~~~~~~---~~-------------------~-~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
. ...||.|+++..+. +. + ......++..+...|+|||+..+
T Consensus 256 ~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 256 HDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred ccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 2 25699999987663 10 0 01125689999999999986665
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00085 Score=60.68 Aligned_cols=134 Identities=13% Similarity=0.218 Sum_probs=97.0
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHcCCCC---CCEEEEECCCchHHHHHHHH---c--cCCEEEEEcCCHHHHHHHH
Q 024096 3 YSCAIFKSEHEDLEVGQMRKVSVLIEKARVSK---GQEVLDIGCGWGTLAIEIVK---Q--TGCKYTGITLSEEQLKYAE 74 (272)
Q Consensus 3 y~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~---~~~vLDiG~G~G~~~~~l~~---~--~~~~v~gvd~s~~~~~~a~ 74 (272)
++...|+.+-.-..+=|...+..++++.+... ...|+-+|.|.|-+.....+ . ...+++++|-+|.++-..+
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~ 412 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQ 412 (649)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhh
Confidence 44556666665666666666777777765432 34677789999987655433 2 3468999999999887765
Q ss_pred HHHHHcCCCCCeEEEEcccCCCCC-CCCccEEEEechhhccChhhH-HHHHHHHHhcCccCcEEEE
Q 024096 75 IKVREAGLQDHIRFYLCDYRQLPK-ANKYDRIISCGMIEHVGHDYM-EEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 75 ~~~~~~g~~~~i~~~~~d~~~~~~-~~~fD~V~~~~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~i 138 (272)
. .+...+.++|+++..|+...++ .++.|++++. .+.-+++.++ ++.+.-+.+.|||+|..+=
T Consensus 413 ~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 413 N-RNFECWDNRVTIISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred h-hchhhhcCeeEEEeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 5 3334567899999999999985 4899998874 4455555544 6899999999999987763
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.014 Score=49.45 Aligned_cols=121 Identities=18% Similarity=0.222 Sum_probs=83.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--CCCeEEEEcccCCC-C
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL--QDHIRFYLCDYRQL-P 97 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~~-~ 97 (272)
..++..+...-......|+.+|||.=.-...+....+.+++=+|. |+.++.-++.+.+.+. ..+.+++..|+.+. .
T Consensus 68 r~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~ 146 (260)
T TIGR00027 68 RFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWP 146 (260)
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHH
Confidence 334555544322334579999999876666664323456666664 6777777777776542 45788999998621 0
Q ss_pred ---C-----CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 98 ---K-----ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 98 ---~-----~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
. .+.--++++.+++.+++.+....+++.+.+...||+.+++....
T Consensus 147 ~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 147 AALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred HHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 1 13455888889999999988999999999988899999885443
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0012 Score=53.60 Aligned_cols=112 Identities=20% Similarity=0.277 Sum_probs=73.9
Q ss_pred ccccccCCCCCCHH---HHHHHHHHHHHHHcCC------CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHH
Q 024096 3 YSCAIFKSEHEDLE---VGQMRKVSVLIEKARV------SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKY 72 (272)
Q Consensus 3 y~~~~~~~~~~~l~---~aq~~~~~~l~~~l~~------~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~ 72 (272)
|+-.+|+=++..|. ......+.++.+.|.- .++.++||||.|--.+=-.+..+ ++.+.+|.|+++..++.
T Consensus 38 Y~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~s 117 (292)
T COG3129 38 YAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSS 117 (292)
T ss_pred cceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHH
Confidence 55556655554333 1122334444444331 35678999998865544444444 78999999999999999
Q ss_pred HHHHHHHc-CCCCCeEEEEcccCC-C-C----CCCCccEEEEechhhcc
Q 024096 73 AEIKVREA-GLQDHIRFYLCDYRQ-L-P----KANKYDRIISCGMIEHV 114 (272)
Q Consensus 73 a~~~~~~~-g~~~~i~~~~~d~~~-~-~----~~~~fD~V~~~~~~~~~ 114 (272)
|+..+..+ ++...++.+...-.+ + + ..+.||++.|+..+|..
T Consensus 118 A~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 118 AKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred HHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcchh
Confidence 99999887 676667765543222 1 1 35799999999998854
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0067 Score=50.49 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=70.3
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHH-----HHcCCCCCeEEEEcccCCCC----CCCC-cc
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKV-----REAGLQDHIRFYLCDYRQLP----KANK-YD 103 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~-----~~~g~~~~i~~~~~d~~~~~----~~~~-fD 103 (272)
...+|||+|+|+|-.+..++...+++|...|+.. .++....+. +.+.+...+.+...+....+ -... +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 3567999999999888777776788999888744 333333332 22222235666666655543 1233 99
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|++..++.+- +....++.-+...|..++.+++.
T Consensus 165 lilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 165 LILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred EEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEE
Confidence 99999998876 55678888888888899965553
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0016 Score=57.84 Aligned_cols=102 Identities=24% Similarity=0.253 Sum_probs=78.5
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEcccCCCC--CCCCccEEEEe
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TG-CKYTGITLSEEQLKYAEIKVREAGLQD-HIRFYLCDYRQLP--KANKYDRIISC 108 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~-~i~~~~~d~~~~~--~~~~fD~V~~~ 108 (272)
.+.+|||.=+|+|.=++..+.+ .+ .+|+.-|+|+..++.+++|++.+++++ ++++.+.|+..+- ....||+|=..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4569999999999988888887 44 589999999999999999999999987 7999999987765 56899999874
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
. ++ .+..++..+.+.++.||.+.++..
T Consensus 129 P----fG--Sp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 129 P----FG--SPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp -----SS----HHHHHHHHHHEEEEEEEEEEE-
T ss_pred C----CC--CccHhHHHHHHHhhcCCEEEEecc
Confidence 3 22 236789999999999999999543
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00051 Score=58.96 Aligned_cols=86 Identities=21% Similarity=0.251 Sum_probs=64.6
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---- 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---- 97 (272)
++.+++.+...++..++|.--|.|+-+..+.+. ++++++|+|-++.+++.+++++... .+++.++++++.++.
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~ 86 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLK 86 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHH
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHH
Confidence 567788888889999999999999999999988 6799999999999999998876543 468999999998876
Q ss_pred -C--CCCccEEEEech
Q 024096 98 -K--ANKYDRIISCGM 110 (272)
Q Consensus 98 -~--~~~fD~V~~~~~ 110 (272)
. ...+|.|+....
T Consensus 87 ~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 87 ELNGINKVDGILFDLG 102 (310)
T ss_dssp HTTTTS-EEEEEEE-S
T ss_pred HccCCCccCEEEEccc
Confidence 1 247888887653
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0053 Score=52.10 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272)
.++.+++.|...++...+|.--|.|+-+..+.+. + ..+++|+|-++..++.|++.+...+ +++.+++.++.++.
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~ 88 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEA 88 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHH
Confidence 4578889999999999999999999999999988 3 3679999999999999999987755 68999999988765
Q ss_pred ----CCCCccEEEEechh
Q 024096 98 ----KANKYDRIISCGMI 111 (272)
Q Consensus 98 ----~~~~fD~V~~~~~~ 111 (272)
...++|-|+....+
T Consensus 89 l~~~~i~~vDGiL~DLGV 106 (314)
T COG0275 89 LKELGIGKVDGILLDLGV 106 (314)
T ss_pred HHhcCCCceeEEEEeccC
Confidence 23578888776543
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0069 Score=55.91 Aligned_cols=100 Identities=20% Similarity=0.189 Sum_probs=66.4
Q ss_pred CCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-----------CCC-
Q 024096 32 VSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-----------LPK- 98 (272)
Q Consensus 32 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-----------~~~- 98 (272)
..++++|+=+|||. |..+...++..|++|+++|.+++..+.+++. |. ++...|..+ ...
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----GA----~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----GA----EFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC----eEEEeccccccccccchhhhcchh
Confidence 35789999999995 5566666766889999999999988888763 32 222211111 000
Q ss_pred ------------CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 99 ------------ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 99 ------------~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
...+|+|+..-....- +.+..+.++..+.+||||+++....
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~--~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGK--PAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcc--cCcchHHHHHHHhcCCCCEEEEEcc
Confidence 1468999986544322 1223345899999999999886433
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0041 Score=54.50 Aligned_cols=130 Identities=12% Similarity=0.141 Sum_probs=92.5
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHH-------HHcCC-
Q 024096 12 HEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKV-------REAGL- 82 (272)
Q Consensus 12 ~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~-------~~~g~- 82 (272)
++...+-+.+.+..+++.+.+.+++.-.|+|+|.|++...++...+ .+-.|+++.....+.+..+. +..|-
T Consensus 170 s~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~ 249 (419)
T KOG3924|consen 170 SETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK 249 (419)
T ss_pred ccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC
Confidence 3456788888899999999999999999999999999988887633 46778888655544443332 22233
Q ss_pred CCCeEEEEcccCCCC----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCC
Q 024096 83 QDHIRFYLCDYRQLP----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272)
Q Consensus 83 ~~~i~~~~~d~~~~~----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272)
+..+..+++++.... -....++|+++++..- ++..--++++..-+++|-+++=.....+
T Consensus 250 ~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd---p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 250 PNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD---PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred cCceeecccccCCHHHHHHHhhcceEEEEecccCC---HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 456888899887654 2357889998876443 2333445588888899999875544443
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0037 Score=53.81 Aligned_cols=114 Identities=18% Similarity=0.271 Sum_probs=84.6
Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHH-------HHHHHHHHcCCC-CCeEEEEcccCCCC-
Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLK-------YAEIKVREAGLQ-DHIRFYLCDYRQLP- 97 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~-------~a~~~~~~~g~~-~~i~~~~~d~~~~~- 97 (272)
.+..-.++|+-|.|--.|||++....+. .|+.|+|.||+-.++. ..+.|.++.|.. .-+.+..+|+..-+
T Consensus 201 AN~Amv~pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~ 279 (421)
T KOG2671|consen 201 ANQAMVKPGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPL 279 (421)
T ss_pred hhhhccCCCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcch
Confidence 3444578999999999999999887776 6999999999988876 345677777753 34678999998887
Q ss_pred -CCCCccEEEEechh------------------------hccChh-------hHHHHHHHHHhcCccCcEEEEEee
Q 024096 98 -KANKYDRIISCGMI------------------------EHVGHD-------YMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 98 -~~~~fD~V~~~~~~------------------------~~~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
....||.|+|.... .|.|.. -...++.-.++.|..||++++.-+
T Consensus 280 rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 280 RSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred hhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 55789999998531 222221 123456666889999999998544
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0089 Score=44.09 Aligned_cols=77 Identities=12% Similarity=0.039 Sum_probs=54.1
Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEE
Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRII 106 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~ 106 (272)
...++. .+.+|+|||.+.|..+++++-+...+|+++|+++...+..+++++.+.+-++.. ...+... .-+.||+..
T Consensus 22 Y~~idv-k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v-~~~eW~~--~Y~~~Di~~ 97 (156)
T PHA01634 22 YGMLNV-YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAV-MKGEWNG--EYEDVDIFV 97 (156)
T ss_pred hhheee-cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeecee-ecccccc--cCCCcceEE
Confidence 344443 578999999999999999998755689999999999999999887764322211 1112111 225678766
Q ss_pred E
Q 024096 107 S 107 (272)
Q Consensus 107 ~ 107 (272)
.
T Consensus 98 i 98 (156)
T PHA01634 98 M 98 (156)
T ss_pred E
Confidence 5
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.00038 Score=52.94 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=40.1
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
.+++.|+|.+..+++|+.-++-..++++|+++|||||++-++.+.
T Consensus 44 ~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 44 EDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred CCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 568999999999999998887889999999999999999985443
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.015 Score=51.09 Aligned_cols=102 Identities=21% Similarity=0.269 Sum_probs=64.0
Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCcc
Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYD 103 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD 103 (272)
+......++++||=.||| .|..+..+++..++ +|+++|.+++..+.+++. |...-+.....++.+.. ..+.+|
T Consensus 162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCC
Confidence 344455678999999987 55666777777676 699999999888877653 42111111111222211 123589
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+|+-. .+. ...++...+.|++||++++..
T Consensus 238 ~vid~-----~G~---~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 238 VSFEV-----SGH---PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEEEC-----CCC---HHHHHHHHHHhhcCCEEEEEc
Confidence 88753 322 245667788899999998743
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0068 Score=51.22 Aligned_cols=109 Identities=18% Similarity=0.212 Sum_probs=82.4
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEcccCCCC---CCCCccE
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA--GL-QDHIRFYLCDYRQLP---KANKYDR 104 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~--g~-~~~i~~~~~d~~~~~---~~~~fD~ 104 (272)
+...++||-||-|.|+..+..+++ .-..+.-+|++...++..++.+... |. .+++....||...+- ..++||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 345689999999999999988887 3347999999999999999887654 22 357899999865543 4689999
Q ss_pred EEEechhhccCh--hhHHHHHHHHHhcCccCcEEEEEe
Q 024096 105 IISCGMIEHVGH--DYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 105 V~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
|+..-.=.-.+- ...+.++..+.+.||++|+++...
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 998543222221 234678888999999999999854
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.011 Score=51.68 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHcCCC-CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHH
Q 024096 16 EVGQMRKVSVLIEKARVS-KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIK 76 (272)
Q Consensus 16 ~~aq~~~~~~l~~~l~~~-~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~ 76 (272)
.+.+.+.+..++..+... +-+.|+|+|.|.|.++..++-..+..|.+||-|....+.|+..
T Consensus 134 ~qhEi~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 134 KQHEIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 356666677777776543 4479999999999999999988899999999998777777654
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.01 Score=50.84 Aligned_cols=61 Identities=21% Similarity=0.189 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH
Q 024096 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVRE 79 (272)
Q Consensus 17 ~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~ 79 (272)
+--...++.+++... .+|+.|||.-||+|..+....+ .+.+.+|+|++++.++.|++++..
T Consensus 192 ~kP~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~-lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 192 QKPEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKA-SGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred cChHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHh
Confidence 333555677776655 6899999999999999887666 488999999999999999999753
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.021 Score=49.79 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-----c----CCEEEEEcCCHHHHHHHHHHHHHc
Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-----T----GCKYTGITLSEEQLKYAEIKVREA 80 (272)
Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-----~----~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272)
.--..+-.+.+++..+....++|+|.|+|.++..+.+. | .+++..+|+|++..+.=+++++..
T Consensus 61 lla~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 61 LLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 33334455667777767789999999999999887663 1 579999999999998888887654
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.015 Score=46.12 Aligned_cols=104 Identities=17% Similarity=0.185 Sum_probs=74.5
Q ss_pred CCCEEEEECCCchHHHHHHHHc---cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CCCC
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ---TG--CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------KANK 101 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~---~~--~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~~~~ 101 (272)
.++.|+|+|+-.|+.+.+.|.. .| .+|+++|++-...+.+... . ++|.++.++..+.. ..+.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCCCHHHHHHHHHHhcC
Confidence 4569999999999988888764 34 7999999987665443322 1 58999999987754 1222
Q ss_pred c-cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 102 Y-DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 102 f-D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
+ -+.++..+-||+ +.....++-...+|..|-++++.+....+
T Consensus 143 y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 143 YPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred CCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 3 344555666666 55567788888999999999997765443
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0024 Score=45.93 Aligned_cols=39 Identities=31% Similarity=0.598 Sum_probs=32.2
Q ss_pred CccEEEEechhhcc----ChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 101 KYDRIISCGMIEHV----GHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 101 ~fD~V~~~~~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+||+|+|..+.-++ +|+-+..+++++++.|+|||.+++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999998877654 5667788999999999999999984
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.036 Score=53.38 Aligned_cols=134 Identities=15% Similarity=0.157 Sum_probs=76.2
Q ss_pred ccccccCCCCCCHHHHHHHHHH--HHHHHcC--CCCCCEEEEECCCchHHHHHHHHc--------c-----CCEEEEEcC
Q 024096 3 YSCAIFKSEHEDLEVGQMRKVS--VLIEKAR--VSKGQEVLDIGCGWGTLAIEIVKQ--------T-----GCKYTGITL 65 (272)
Q Consensus 3 y~~~~~~~~~~~l~~aq~~~~~--~l~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~--------~-----~~~v~gvd~ 65 (272)
|--.||+. +..+.++..-.+. .+-++.. -.+.-+|+|+|-|+|.......+. + ..+++++|.
T Consensus 23 f~d~y~s~-~~~~~e~~~~f~~~~~l~~r~~~~~~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~ 101 (662)
T PRK01747 23 FDDVYFSN-DNGLEETRYVFLGGNGLPERWAEHPRRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEK 101 (662)
T ss_pred CCCcccCC-CCHHHHhhhhhhcCCCHHHHHhcCCCCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEEC
Confidence 33445554 4457777775542 2233331 234479999999999866554421 2 248999997
Q ss_pred CH---HHHHHH-----------HHHHHH-----cCC------CC--CeEEEEcccCCCC--CCCCccEEEEechhhccCh
Q 024096 66 SE---EQLKYA-----------EIKVRE-----AGL------QD--HIRFYLCDYRQLP--KANKYDRIISCGMIEHVGH 116 (272)
Q Consensus 66 s~---~~~~~a-----------~~~~~~-----~g~------~~--~i~~~~~d~~~~~--~~~~fD~V~~~~~~~~~~~ 116 (272)
.| +.+..+ ++.... .|+ .+ +++...+|+.+.- ....+|+++...--..-.+
T Consensus 102 ~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np 181 (662)
T PRK01747 102 FPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNP 181 (662)
T ss_pred CCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccCh
Confidence 54 222222 222111 121 11 3456778876543 2356999998642221100
Q ss_pred hh-HHHHHHHHHhcCccCcEEE
Q 024096 117 DY-MEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 117 ~~-~~~~l~~~~~~LkpgG~l~ 137 (272)
+- -..+++++.++++|||.+.
T Consensus 182 ~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 182 DMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred hhccHHHHHHHHHHhCCCCEEE
Confidence 11 1689999999999999987
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.015 Score=47.64 Aligned_cols=57 Identities=30% Similarity=0.385 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHH
Q 024096 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEI 75 (272)
Q Consensus 17 ~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~ 75 (272)
+-....++.+++... .+|+.|||.-||+|..+....+. +.+.+|+|+++...+.|++
T Consensus 175 ~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l-~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEEL-GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHT-T-EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHc-CCeEEEEeCCHHHHHHhcC
Confidence 444556677777654 67899999999999999877764 8899999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.075 Score=47.57 Aligned_cols=108 Identities=24% Similarity=0.265 Sum_probs=69.5
Q ss_pred HHcCCCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-c----CCCCCCC
Q 024096 28 EKARVSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD-Y----RQLPKAN 100 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d-~----~~~~~~~ 100 (272)
+...+.++.+||..|||. |..+..+++..+. ++++++.+++..+.+++.. +. ..+.....+ + .+.....
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCC
Confidence 455677899999999997 8888889888665 6999999998888877642 11 111111111 1 1111234
Q ss_pred CccEEEEechhh-----------cc--ChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 101 KYDRIISCGMIE-----------HV--GHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 101 ~fD~V~~~~~~~-----------~~--~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+|+|+-.-.-+ |. +..+....++++.+.|+++|+++..
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 689887742111 11 0011255788889999999999874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.025 Score=46.86 Aligned_cols=61 Identities=23% Similarity=0.333 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272)
Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272)
.-...++.+++... .+|+.|||.-||+|..+....+. +.+.+|+|+++...+.+.+++...
T Consensus 148 kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 148 KPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHH
Confidence 33445566666544 57899999999999998877764 889999999999999999888654
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.02 Score=48.24 Aligned_cols=88 Identities=23% Similarity=0.336 Sum_probs=57.1
Q ss_pred HHHHHcCCC-CCCEEEEECCCchHHHHHHHHc-c--------CCEEEEEcCCHHHHHHHHHHHHHc-----CCCCCeEEE
Q 024096 25 VLIEKARVS-KGQEVLDIGCGWGTLAIEIVKQ-T--------GCKYTGITLSEEQLKYAEIKVREA-----GLQDHIRFY 89 (272)
Q Consensus 25 ~l~~~l~~~-~~~~vLDiG~G~G~~~~~l~~~-~--------~~~v~gvd~s~~~~~~a~~~~~~~-----g~~~~i~~~ 89 (272)
...+.+... ...+|+|+|+|+|.++..+.+. . ..+++.+|+||.+.+.-++++... ....++.+
T Consensus 8 ~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w- 86 (252)
T PF02636_consen 8 QMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW- 86 (252)
T ss_dssp HHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-
T ss_pred HHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-
Confidence 344555422 2479999999999999988764 1 258999999999988888887542 12335666
Q ss_pred EcccCCCCCCCCccEEEEechhhccCh
Q 024096 90 LCDYRQLPKANKYDRIISCGMIEHVGH 116 (272)
Q Consensus 90 ~~d~~~~~~~~~fD~V~~~~~~~~~~~ 116 (272)
..++.+.| ..-+|++++++..+|.
T Consensus 87 ~~~l~~~p---~~~~iiaNE~~DAlP~ 110 (252)
T PF02636_consen 87 LDDLEEVP---FPGFIIANELFDALPV 110 (252)
T ss_dssp ESSGGCS----CCEEEEEESSGGGS--
T ss_pred hhhhhccc---CCEEEEEeeehhcCce
Confidence 33444443 5678899999988864
|
; PDB: 4F3N_A 1ZKD_B. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.096 Score=43.37 Aligned_cols=108 Identities=11% Similarity=0.110 Sum_probs=74.3
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CC-CCc
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-----TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KA-NKY 102 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-----~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~-~~f 102 (272)
+..+.+.+|+|+|+..-+..|... .-.+++.+|+|...+....+.+...-..-.+.-+++|.+..- +. ++=
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeE
Confidence 345789999999999877776554 236899999999887654444433222123566777765422 21 222
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
=.++...++-++.+.+...++.++...|+||-++++-
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 2344455777887788889999999999999999984
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.054 Score=51.08 Aligned_cols=98 Identities=17% Similarity=0.339 Sum_probs=67.6
Q ss_pred EEEEECCCchHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHH-HHcCC-------CCCeEEEEcccCCCCCC----
Q 024096 37 EVLDIGCGWGTLAIEIVKQ-----TGCKYTGITLSEEQLKYAEIKV-REAGL-------QDHIRFYLCDYRQLPKA---- 99 (272)
Q Consensus 37 ~vLDiG~G~G~~~~~l~~~-----~~~~v~gvd~s~~~~~~a~~~~-~~~g~-------~~~i~~~~~d~~~~~~~---- 99 (272)
.|+-+|+|.|-+.....+. ...++++||.++..+.....+. ....+ .++|+++..|+.....+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999876655443 2368999999977555544443 22234 23599999999988521
Q ss_pred --------CCccEEEEechhhccChhhH-HHHHHHHHhcCcc----CcE
Q 024096 100 --------NKYDRIISCGMIEHVGHDYM-EEFFGCCESLLAT----HGL 135 (272)
Q Consensus 100 --------~~fD~V~~~~~~~~~~~~~~-~~~l~~~~~~Lkp----gG~ 135 (272)
+++|+|+| +.+--++++++ ++.|.-+.+.||+ +|.
T Consensus 783 s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 27999988 34445555544 6788888888887 776
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.051 Score=47.24 Aligned_cols=96 Identities=24% Similarity=0.324 Sum_probs=64.8
Q ss_pred HcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC------CCCCCC
Q 024096 29 KARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ------LPKANK 101 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~------~~~~~~ 101 (272)
...+.++.+||..|+| .|..+..+++..+.++++++.++...+.+++. |.. .+....-.. ......
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~ 232 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL----GAD---EVLNSLDDSPKDKKAAGLGGG 232 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----CCC---EEEcCCCcCHHHHHHHhcCCC
Confidence 3347788999999887 47888888888788999999999888777542 431 111111001 113457
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|+|+... +. ...++++.+.|+++|+++..
T Consensus 233 ~D~vid~~-----g~---~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 233 FDVIFDFV-----GT---QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred ceEEEECC-----CC---HHHHHHHHHHhhcCCEEEEE
Confidence 89887531 11 35677788999999999874
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.063 Score=46.98 Aligned_cols=100 Identities=20% Similarity=0.147 Sum_probs=78.2
Q ss_pred CCEEEEECCCchHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEechh
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGMI 111 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~~ 111 (272)
..+|+|.=||+|.=++..+.+.+ .+++.-|+||..++.+++|.+.|.. .+...++.|+..+- ....||+|=...
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDiDP-- 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDIDP-- 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEecCC--
Confidence 67999999999999998888844 4999999999999999999998833 35666768876665 237899887643
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
++ .+..++....+.++.||.+.++..
T Consensus 130 --FG--SPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 130 --FG--SPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred --CC--CCchHHHHHHHHhhcCCEEEEEec
Confidence 21 235677788888899999998543
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.2 Score=44.37 Aligned_cols=98 Identities=20% Similarity=0.157 Sum_probs=66.3
Q ss_pred CCCCCEEEEECCCc-hHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC--------CCCCCCC
Q 024096 32 VSKGQEVLDIGCGW-GTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR--------QLPKANK 101 (272)
Q Consensus 32 ~~~~~~vLDiG~G~-G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~--------~~~~~~~ 101 (272)
..++.+|+=+|||+ |.++..+++.. ..+|+.+|.++..++.|++... .....-... +......
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g-------~~~~~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG-------ADVVVNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC-------CeEeecCccccHHHHHHHHhCCCC
Confidence 34555999999995 66667777774 4689999999999999988531 121111111 1112246
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCC
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272)
+|+++-.-. . ...+..+.+.++|+|.+++.-+...
T Consensus 239 ~D~vie~~G---~-----~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 239 ADVVIEAVG---S-----PPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred CCEEEECCC---C-----HHHHHHHHHHhcCCCEEEEEeccCC
Confidence 999986433 1 4578888999999999998655533
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.13 Score=44.90 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=63.0
Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEE
Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRII 106 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~ 106 (272)
....+++|.+||=.|+| .|..+..+++..++++++++.+++..+.+++. |.. .++ |..+. ..+.+|+++
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~----Ga~---~vi--~~~~~-~~~~~d~~i 228 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL----GAA---SAG--GAYDT-PPEPLDAAI 228 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh----CCc---eec--ccccc-CcccceEEE
Confidence 45677889999999976 45566777777788999999998877766653 432 111 11111 124578766
Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
.... . ...+....+.|+++|++++.-
T Consensus 229 ~~~~---~-----~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 229 LFAP---A-----GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ECCC---c-----HHHHHHHHHhhCCCcEEEEEe
Confidence 4322 1 235777888999999998743
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.031 Score=45.63 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=65.5
Q ss_pred CCEEEEECCCchHHHHHHHHc-cC---------CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ-TG---------CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------- 97 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~-~~---------~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------- 97 (272)
-.+++|++...|.++..|.++ .. .++++||+.+- ..+ +.|..+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI-~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------API-EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------Ccc-CceEEeecccCCHhHHHHHHH
Confidence 369999999999999999876 21 13999998651 123 36788999987754
Q ss_pred --CCCCccEEEEech-----hhccCh----hhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 --KANKYDRIISCGM-----IEHVGH----DYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 --~~~~fD~V~~~~~-----~~~~~~----~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..++.|+|+|.+. +|.++. +-+...+.-...+|||||.++.-
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 3468999999874 333311 11234556667899999999853
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.18 Score=39.58 Aligned_cols=128 Identities=20% Similarity=0.272 Sum_probs=74.5
Q ss_pred ECCCchHHHHHHHHc-c-CCEEEEE--cCCHHHHHH---HHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEe
Q 024096 41 IGCGWGTLAIEIVKQ-T-GCKYTGI--TLSEEQLKY---AEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIISC 108 (272)
Q Consensus 41 iG~G~G~~~~~l~~~-~-~~~v~gv--d~s~~~~~~---a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~~ 108 (272)
+|=|.=+++..|++. . +..+++. |...+..+. +.+++....-.+-.-....|+.++. ....||.|+-+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 455555667777776 3 4455544 443333322 2234433311112234566777766 24789999987
Q ss_pred chhhccC------h-------hhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHH
Q 024096 109 GMIEHVG------H-------DYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVT 175 (272)
Q Consensus 109 ~~~~~~~------~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 175 (272)
. .|.+ . +-+..+++.+..+|+++|.+.|+-..... + ..+..
T Consensus 83 F--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--y------------------~~W~i---- 136 (166)
T PF10354_consen 83 F--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--Y------------------DSWNI---- 136 (166)
T ss_pred C--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--C------------------ccccH----
Confidence 5 4555 1 22456899999999999999995433211 0 00122
Q ss_pred HHhhcCCCcEEEEEEecCc
Q 024096 176 SAMTSSSGLCVEHLENIGI 194 (272)
Q Consensus 176 ~~l~~~~Gf~v~~~~~~~~ 194 (272)
..+++++||.+.....+..
T Consensus 137 ~~lA~~~gl~l~~~~~F~~ 155 (166)
T PF10354_consen 137 EELAAEAGLVLVRKVPFDP 155 (166)
T ss_pred HHHHHhcCCEEEEEecCCH
Confidence 2456679999988877653
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.0091 Score=53.86 Aligned_cols=101 Identities=20% Similarity=0.171 Sum_probs=82.8
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEE
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRII 106 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~ 106 (272)
++.+|||.=|++|.-++..+.+ ++ .+|++.|.++..++..+++.+.++..+.++..+.|+..+- ....||+|-
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 5679999999999999998888 55 4799999999999999999999988888888888876543 347899997
Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
...-- ....+++...+.++.||.++++.
T Consensus 189 LDPyG------s~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 189 LDPYG------SPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cCCCC------CccHHHHHHHHHhhcCCEEEEEe
Confidence 64321 12578888888899999999854
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.15 Score=43.87 Aligned_cols=108 Identities=22% Similarity=0.204 Sum_probs=70.3
Q ss_pred HHHHHcCCCCCCEEEEECCCc-hHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-c-cCCC----
Q 024096 25 VLIEKARVSKGQEVLDIGCGW-GTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-D-YRQL---- 96 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d-~~~~---- 96 (272)
+...+...+.|.+||-+|+|+ |..+...|+..| .+|+.+|+++..++.|++. |.. .+..... + ...+
T Consensus 160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~----Ga~-~~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF----GAT-VTDPSSHKSSPQELAELV 234 (354)
T ss_pred hhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh----CCe-EEeeccccccHHHHHHHH
Confidence 445666788999999999994 666666677655 5899999999999999983 321 1111111 1 1110
Q ss_pred C---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 97 P---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 97 ~---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
. ....+|+.+....++ ..++.....++.||.+++..+..+.
T Consensus 235 ~~~~g~~~~d~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 235 EKALGKKQPDVTFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred HhhccccCCCeEEEccCch--------HHHHHHHHHhccCCEEEEeccCCCc
Confidence 1 224588888764333 3444456678999998887665443
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.11 Score=45.72 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=60.7
Q ss_pred cCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcC---CHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE
Q 024096 30 ARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITL---SEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRI 105 (272)
Q Consensus 30 l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~---s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V 105 (272)
....++.+||-+|+| .|.++..+++..++++++++. ++...+.+++ .|.. .+.....+..+......+|+|
T Consensus 168 ~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~~~~~~~~d~v 242 (355)
T cd08230 168 LPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAEVKLVGEFDLI 242 (355)
T ss_pred cccCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhhhhhcCCCCEE
Confidence 345688999999987 466777788777889999986 5666665543 2431 111111111111112468888
Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+-. .+. ...+....+.|+++|++++..
T Consensus 243 id~-----~g~---~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 243 IEA-----TGV---PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred EEC-----cCC---HHHHHHHHHHccCCcEEEEEe
Confidence 864 221 246777888999999988643
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.12 Score=45.48 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=59.9
Q ss_pred cCCCCCCEEEEECCC-chHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEE
Q 024096 30 ARVSKGQEVLDIGCG-WGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRII 106 (272)
Q Consensus 30 l~~~~~~~vLDiG~G-~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~ 106 (272)
+...++++||-+||| .|.++..++++ . +.+|+++|.++...+.+++ .+. .... .+......+|+|+
T Consensus 159 ~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~~~~~~g~d~vi 227 (341)
T cd08237 159 IAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DDIPEDLAVDHAF 227 (341)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hhhhhccCCcEEE
Confidence 345789999999987 34455666664 3 4689999999887777754 221 1111 1122222588887
Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
-. .+.......+....+.|+++|++++.-
T Consensus 228 D~-----~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 228 EC-----VGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred EC-----CCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 43 221111456778888999999998743
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.037 Score=49.30 Aligned_cols=65 Identities=12% Similarity=0.206 Sum_probs=56.4
Q ss_pred cCCCCCeEEEEcccCCCC---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 80 AGLQDHIRFYLCDYRQLP---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 80 ~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
.++ ++++++++++.+.. +++++|.++......+++++...+.++++.+.++|||++++-....+.
T Consensus 272 ~~~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 272 ARL-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred cCC-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 345 69999999998865 578999999999999999999999999999999999999996655443
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.07 Score=46.66 Aligned_cols=98 Identities=26% Similarity=0.329 Sum_probs=63.0
Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc------CCCCC
Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY------RQLPK 98 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~------~~~~~ 98 (272)
+..+.+.++.+||=+|+| .|..+..+++..+++ |++++.+++..+.+++. |.. .++...- .+...
T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~---~~i~~~~~~~~~~~~~~~ 228 (339)
T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GAD---FVINSGQDDVQEIRELTS 228 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEEcCCcchHHHHHHHhC
Confidence 456677889999999876 445666677777777 99999998887777543 431 2221111 11112
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
...+|+|+-. .+. ...+....+.|+++|++++.
T Consensus 229 ~~~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 229 GAGADVAIEC-----SGN---TAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCCCCEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEE
Confidence 3469998853 221 23456667789999999864
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.059 Score=49.78 Aligned_cols=94 Identities=19% Similarity=0.219 Sum_probs=62.3
Q ss_pred CCCEEEEECCCch-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-----------------
Q 024096 34 KGQEVLDIGCGWG-TLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ----------------- 95 (272)
Q Consensus 34 ~~~~vLDiG~G~G-~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~----------------- 95 (272)
++.+|+=+|+|.- ..+..+++..|+.|+++|.++...+.++.. | .+++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----G----a~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----G----AEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEeccccccccccccceeecCHHHH
Confidence 6789999999955 555556666788999999999877766642 3 2332333211
Q ss_pred ------CC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 96 ------LP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 96 ------~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
++ .-..+|+|+..-.+..- +.+.-+.++..+.+|||+.++
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~--~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGK--PAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCC--CCCeeehHHHHhhCCCCCEEE
Confidence 11 12569999876544443 223446777889999999876
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.012 Score=45.32 Aligned_cols=102 Identities=18% Similarity=0.182 Sum_probs=61.3
Q ss_pred CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHH-HHHHHHHcCCCCCe-EEEEcccCC-CC-CCCCccEEEEech
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKY-AEIKVREAGLQDHI-RFYLCDYRQ-LP-KANKYDRIISCGM 110 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~-a~~~~~~~g~~~~i-~~~~~d~~~-~~-~~~~fD~V~~~~~ 110 (272)
+++++-+|+..=-.-....+...+++..+|-++--++. .+. ++ .+...|+.. .. ..++||.+.|..+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~d---------r~ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRD---------RLSSILPVDFAKNWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccc---------ccccccHHHHHHHHHHhhccchhhheech
Confidence 56788888874333333333344578888865522111 111 11 122223221 11 2478999999999
Q ss_pred hhccCh---------hhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 111 IEHVGH---------DYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 111 ~~~~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
++|++- .--...+.++.++|||||.+++..+..++
T Consensus 73 iEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred hccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 999821 11146788899999999999998777554
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.014 Score=49.12 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=68.9
Q ss_pred HHHHHHHHHc--C-CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHH-------HHHH--HcCCCCCeEE
Q 024096 21 RKVSVLIEKA--R-VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAE-------IKVR--EAGLQDHIRF 88 (272)
Q Consensus 21 ~~~~~l~~~l--~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~-------~~~~--~~g~~~~i~~ 88 (272)
..+..+.+.+ . ...+++|||+|||.|...+.........+...|.+...++... -.+. ......-..+
T Consensus 100 dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i 179 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEI 179 (282)
T ss_pred HHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceec
Confidence 3445555443 1 2478899999999999988887764478888888877762111 0110 0000011222
Q ss_pred EEc---ccCCCCCC-CCccEEEEechhhccChhhHHHH-HHHHHhcCccCcEEEE
Q 024096 89 YLC---DYRQLPKA-NKYDRIISCGMIEHVGHDYMEEF-FGCCESLLATHGLLVL 138 (272)
Q Consensus 89 ~~~---d~~~~~~~-~~fD~V~~~~~~~~~~~~~~~~~-l~~~~~~LkpgG~l~i 138 (272)
.+. |....... ..||+|.+..++.... ....+ .......++++|.+++
T Consensus 180 ~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~--~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 180 LNSLLSDGVFNHTERTHYDLILSSETIYSID--SLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred cccccccchhhhccccchhhhhhhhhhhCcc--hhhhhHhhhhhhcCCccchhhh
Confidence 333 22111111 2899999999888773 33444 5566778889998876
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.014 Score=51.79 Aligned_cols=64 Identities=22% Similarity=0.440 Sum_probs=56.4
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC-eEEEEcccCCC
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH-IRFYLCDYRQL 96 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~-i~~~~~d~~~~ 96 (272)
.++|..|-|+-||.|-++..++.+ +++|++.|++++++++.+.++..+.+.+. +++...|+...
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 468999999999999999999987 79999999999999999999988877554 88888886543
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.14 Score=44.22 Aligned_cols=122 Identities=16% Similarity=0.237 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--CCCeEEEEcccCC
Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL--QDHIRFYLCDYRQ 95 (272)
Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~ 95 (272)
+....++..+...-......|+-+|||-=.=+..+-...+.+|+-+|. |+.++.=++.+...+. +.+.+.+..|+.+
T Consensus 76 ~Rtr~fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~ 154 (297)
T COG3315 76 ARTRYFDDFVRAALDAGIRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLRE 154 (297)
T ss_pred HHHHHHHHHHHHHHHhcccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccc
Confidence 344445444444322236899999999744444333323456666664 7788887777777653 3478999999985
Q ss_pred CC-----C-----CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 96 LP-----K-----ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 96 ~~-----~-----~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
-. . .+.--++++.+++.+++.+...++++.+.....||..+++..
T Consensus 155 ~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 155 DDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred cchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 43 2 244558888999999999999999999999999999988754
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.089 Score=46.51 Aligned_cols=99 Identities=24% Similarity=0.305 Sum_probs=63.6
Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-------CC
Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-------LP 97 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-------~~ 97 (272)
.+...+.++.+||=.|+| .|..+..+++..++ +|+++|.++...+.+++. |.. .++...-.+ ..
T Consensus 169 ~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~i~~~~ 241 (358)
T TIGR03451 169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GAT---HTVNSSGTDPVEAIRALT 241 (358)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEEcCCCcCHHHHHHHHh
Confidence 344567889999999986 45666777777777 599999999888877543 431 222111111 11
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
....+|+|+-. .+. ...++...+.++++|++++.-
T Consensus 242 ~~~g~d~vid~-----~g~---~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 242 GGFGADVVIDA-----VGR---PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCCCCCEEEEC-----CCC---HHHHHHHHHHhccCCEEEEEC
Confidence 22468988753 221 235666778899999998743
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.11 Score=46.31 Aligned_cols=99 Identities=19% Similarity=0.194 Sum_probs=63.8
Q ss_pred HHHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----C--
Q 024096 26 LIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL----P-- 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~-- 97 (272)
+.+...+.++.+||=.|+| .|..+..+++..++ +|+++|.++...+.+++. |.. .++..+-.+. .
T Consensus 183 ~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~i~~~ 255 (371)
T cd08281 183 VVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GAT---ATVNAGDPNAVEQVREL 255 (371)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCc---eEeCCCchhHHHHHHHH
Confidence 3455667889999999986 45566777777777 699999999888877643 431 2222111111 1
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+.+|+|+-. .+. ...+....+.|+++|++++.
T Consensus 256 ~~~g~d~vid~-----~G~---~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 256 TGGGVDYAFEM-----AGS---VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred hCCCCCEEEEC-----CCC---hHHHHHHHHHHhcCCEEEEE
Confidence 12368988753 211 24566677889999999864
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.046 Score=46.63 Aligned_cols=69 Identities=13% Similarity=0.162 Sum_probs=52.7
Q ss_pred EEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC---CCCccEEEEechhh
Q 024096 37 EVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK---ANKYDRIISCGMIE 112 (272)
Q Consensus 37 ~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~---~~~fD~V~~~~~~~ 112 (272)
+|+|+.||.|+++.-+.+. |. .+.++|+++..++..+.+.. . .++++|+.++.. ...+|+++......
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~------~-~~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFP------N-KLIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCC------C-CCccCccccCchhhcCCCCCEEEeCCCCh
Confidence 6999999999998888776 44 57889999998888777642 1 267788887762 35799999887544
Q ss_pred c
Q 024096 113 H 113 (272)
Q Consensus 113 ~ 113 (272)
.
T Consensus 74 ~ 74 (275)
T cd00315 74 P 74 (275)
T ss_pred h
Confidence 3
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.0082 Score=50.79 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=63.5
Q ss_pred CCCEEEEECCCchHHHH-HHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEe
Q 024096 34 KGQEVLDIGCGWGTLAI-EIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISC 108 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~-~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~ 108 (272)
.+..|+|+=+|.|.++. .+.......|.++|.+|..++..+++++.++..++..+..+|-....+....|.|...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeec
Confidence 45899999999999998 6666545689999999999999999999988777788888887776677888988764
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.083 Score=39.18 Aligned_cols=84 Identities=26% Similarity=0.319 Sum_probs=59.0
Q ss_pred CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CCCCccEEEEechhhccCh
Q 024096 44 GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------KANKYDRIISCGMIEHVGH 116 (272)
Q Consensus 44 G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~~~~fD~V~~~~~~~~~~~ 116 (272)
|.|..+..+++..|++|+++|.++.-.+.+++. |. ..+...+-.+.. ....+|+|+-. .+.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~-----~g~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDC-----VGS 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE---SEEEETTTSSHHHHHHHHTTTSSEEEEEES-----SSS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc---cccccccccccccccccccccccceEEEEe-----cCc
Confidence 468899999988779999999999888887754 31 233333322111 23579999864 331
Q ss_pred hhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 117 DYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 117 ~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
...++.....|+++|++++....
T Consensus 69 ---~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 69 ---GDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp ---HHHHHHHHHHEEEEEEEEEESST
T ss_pred ---HHHHHHHHHHhccCCEEEEEEcc
Confidence 46788888999999999985443
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.25 Score=43.22 Aligned_cols=103 Identities=26% Similarity=0.371 Sum_probs=66.8
Q ss_pred HHHHHHcCCCCCCEEEEEC--CCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----C
Q 024096 24 SVLIEKARVSKGQEVLDIG--CGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL----P 97 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG--~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~ 97 (272)
..+.+...+++|.+||=.| .|.|.++.+|++..+..++++.-+++-.+.+++. |-..-+.+...|+.+- .
T Consensus 132 ~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l----GAd~vi~y~~~~~~~~v~~~t 207 (326)
T COG0604 132 LALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL----GADHVINYREEDFVEQVRELT 207 (326)
T ss_pred HHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhc----CCCEEEcCCcccHHHHHHHHc
Confidence 4445556788899999998 4467889999998765777777677555544443 4322233333433221 1
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+-. ++ ...+.+....|+++|+++..
T Consensus 208 ~g~gvDvv~D~-----vG----~~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 208 GGKGVDVVLDT-----VG----GDTFAASLAALAPGGRLVSI 240 (326)
T ss_pred CCCCceEEEEC-----CC----HHHHHHHHHHhccCCEEEEE
Confidence 33479999963 33 35566677888999999874
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.15 Score=43.33 Aligned_cols=99 Identities=22% Similarity=0.199 Sum_probs=62.6
Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-c----cCCCCCC
Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-D----YRQLPKA 99 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d----~~~~~~~ 99 (272)
++.....++.+||=+|+| .|..+..+++..+++ |+++|.++...+.+++. |.. .++.. + +.+....
T Consensus 113 l~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~ 185 (280)
T TIGR03366 113 LEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT---ALAEPEVLAERQGGLQNG 185 (280)
T ss_pred HHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc---EecCchhhHHHHHHHhCC
Confidence 445555688999999886 455666777766765 99999988877776653 321 11111 1 1111122
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
..+|+|+-. .+. ...++...+.|+++|++++.-
T Consensus 186 ~g~d~vid~-----~G~---~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 186 RGVDVALEF-----SGA---TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCCCEEEEC-----CCC---hHHHHHHHHHhcCCCEEEEec
Confidence 468988753 221 346677788899999998743
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.13 Score=42.92 Aligned_cols=97 Identities=27% Similarity=0.351 Sum_probs=62.0
Q ss_pred HHcC-CCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC------CCC
Q 024096 28 EKAR-VSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL------PKA 99 (272)
Q Consensus 28 ~~l~-~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~------~~~ 99 (272)
..+. +.++.+||..|+|. |.....+++..+.++++++.++...+.+++. +.. .++....... ...
T Consensus 127 ~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~ 199 (271)
T cd05188 127 RRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD---HVIDYKEEDLEEELRLTGG 199 (271)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc---eeccCCcCCHHHHHHHhcC
Confidence 3344 37889999999985 7777777777788999999998777666443 211 1111111111 123
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+|+|+.. .+. ...+..+.+.|+++|.++..
T Consensus 200 ~~~d~vi~~-----~~~---~~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 200 GGADVVIDA-----VGG---PETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred CCCCEEEEC-----CCC---HHHHHHHHHhcccCCEEEEE
Confidence 579999864 221 13566677888999998863
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.2 Score=36.33 Aligned_cols=84 Identities=15% Similarity=0.159 Sum_probs=56.7
Q ss_pred CCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEechhhcc
Q 024096 43 CGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIISCGMIEHV 114 (272)
Q Consensus 43 ~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~~~~~~~~ 114 (272)
||.|..+..+++. .+.+++.+|.+++.++.+++. .+.++.+|..+.. .-++.|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~----- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVILT----- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEES-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEcc-----
Confidence 5666777777665 345899999999988777654 4789999998765 336788888753
Q ss_pred ChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 115 GHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 115 ~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+++.....+....+.+.|...+++.
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 2233344555556667788888763
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.29 Score=42.53 Aligned_cols=98 Identities=23% Similarity=0.374 Sum_probs=64.7
Q ss_pred HHHHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc----cCCC-C-
Q 024096 26 LIEKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD----YRQL-P- 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d----~~~~-~- 97 (272)
+.+...+.+|.+||=.|. |.|..+..+++..|+++++++.+++..+.+++ .|.. .++..+ ..+. .
T Consensus 130 l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~ 202 (325)
T TIGR02825 130 LLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD---VAFNYKTVKSLEETLKK 202 (325)
T ss_pred HHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeccccccHHHHHHH
Confidence 345567889999999984 47788888888888899999988887777754 2431 222111 1110 0
Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+.+|+|+-. .+. ..+....+.|+++|+++..
T Consensus 203 ~~~~gvdvv~d~-----~G~----~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 203 ASPDGYDCYFDN-----VGG----EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred hCCCCeEEEEEC-----CCH----HHHHHHHHHhCcCcEEEEe
Confidence 22468888752 321 2356778889999999863
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.16 Score=42.50 Aligned_cols=126 Identities=12% Similarity=0.119 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc------cCCEEEEEcCCH-------------------
Q 024096 14 DLEVGQMRKVSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ------TGCKYTGITLSE------------------- 67 (272)
Q Consensus 14 ~l~~aq~~~~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~------~~~~v~gvd~s~------------------- 67 (272)
.+.......+..+++.+- ..-...|+|+||-.|+.+..++.. .+.++.++|.-+
T Consensus 53 m~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~ 132 (248)
T PF05711_consen 53 MIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFH 132 (248)
T ss_dssp SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCC
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhh
Confidence 445566666777777764 222347999999999877665431 245788887432
Q ss_pred -------HHHHHHHHHHHHcCC-CCCeEEEEcccCC-CC--CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEE
Q 024096 68 -------EQLKYAEIKVREAGL-QDHIRFYLCDYRQ-LP--KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLL 136 (272)
Q Consensus 68 -------~~~~~a~~~~~~~g~-~~~i~~~~~d~~~-~~--~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 136 (272)
...+..++++...|+ .++++++.|.+.+ +| +.+++-++....=+. +.....|+.++..|.|||.+
T Consensus 133 ~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY----esT~~aLe~lyprl~~GGiI 208 (248)
T PF05711_consen 133 EYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY----ESTKDALEFLYPRLSPGGII 208 (248)
T ss_dssp GCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH----HHHHHHHHHHGGGEEEEEEE
T ss_pred hcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccch----HHHHHHHHHHHhhcCCCeEE
Confidence 123444444444454 4589999999865 33 233443333322111 34468899999999999999
Q ss_pred EEEeecC
Q 024096 137 VLQFISA 143 (272)
Q Consensus 137 ~i~~~~~ 143 (272)
++.++..
T Consensus 209 i~DDY~~ 215 (248)
T PF05711_consen 209 IFDDYGH 215 (248)
T ss_dssp EESSTTT
T ss_pred EEeCCCC
Confidence 9976654
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.27 Score=42.87 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=61.5
Q ss_pred HHcCCCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc---cCCCC-CCCC
Q 024096 28 EKARVSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD---YRQLP-KANK 101 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d---~~~~~-~~~~ 101 (272)
..+...++.+||-.|+|. |..+..+++..+. ++++++.++...+.+++. +.. .++..+ ..... ....
T Consensus 159 ~~~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~ 231 (339)
T cd08232 159 NRAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD---ETVNLARDPLAAYAADKGD 231 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC---EEEcCCchhhhhhhccCCC
Confidence 344444788999998875 6677778877777 799999988877755442 321 222111 11222 2245
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+|+|+..... ...++.+.+.|+++|+++.
T Consensus 232 vd~vld~~g~--------~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 232 FDVVFEASGA--------PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred ccEEEECCCC--------HHHHHHHHHHHhcCCEEEE
Confidence 8999864221 2356777888999999885
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.33 Score=42.84 Aligned_cols=97 Identities=21% Similarity=0.289 Sum_probs=64.2
Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc----ccCC-CC--C
Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC----DYRQ-LP--K 98 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~----d~~~-~~--~ 98 (272)
+...+.+|++||=.|+ |.|..+..+++..|+++++++.++...+.+++. .|.. .++.. +..+ +. .
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~---~vi~~~~~~~~~~~i~~~~ 225 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD---EAFNYKEEPDLDAALKRYF 225 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC---EEEECCCcccHHHHHHHHC
Confidence 4456789999999987 377888888888888999999888777666532 2432 22211 1111 11 1
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+.+|+|+-. .+ ...+..+.+.|+++|++++.
T Consensus 226 ~~gvD~v~d~-----vG----~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 226 PEGIDIYFDN-----VG----GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CCCcEEEEEC-----CC----HHHHHHHHHHhccCCEEEEE
Confidence 2468888753 32 13566778889999999863
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.31 Score=43.51 Aligned_cols=98 Identities=22% Similarity=0.302 Sum_probs=62.2
Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-----cCC-CC-
Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD-----YRQ-LP- 97 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d-----~~~-~~- 97 (272)
.+...+.++++||=+|+| .|..+..+++..++ +|+++|.++...+.+++. |.. .++... +.+ +.
T Consensus 191 ~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~v~~ 263 (381)
T PLN02740 191 WNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----GIT---DFINPKDSDKPVHERIRE 263 (381)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----CCc---EEEecccccchHHHHHHH
Confidence 344567889999999987 45566677777777 699999999888877553 432 222211 111 11
Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEE
Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQ 139 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 139 (272)
..+.+|+|+-. .+. ...+......++++ |++++.
T Consensus 264 ~~~~g~dvvid~-----~G~---~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 264 MTGGGVDYSFEC-----AGN---VEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred HhCCCCCEEEEC-----CCC---hHHHHHHHHhhhcCCCEEEEE
Confidence 11268988753 321 24566666778886 988764
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.32 Score=42.12 Aligned_cols=97 Identities=23% Similarity=0.334 Sum_probs=64.3
Q ss_pred HHHcCCCCCCEEEEEC--CCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----C--C
Q 024096 27 IEKARVSKGQEVLDIG--CGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL----P--K 98 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG--~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~--~ 98 (272)
.+...+.+|.+||=.| .|.|..+..+++..|+++++++.+++..+.+++. |.. .++...-.+. . .
T Consensus 136 ~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~----Ga~---~vi~~~~~~~~~~v~~~~ 208 (329)
T cd08294 136 LEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKEL----GFD---AVFNYKTVSLEEALKEAA 208 (329)
T ss_pred HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EEEeCCCccHHHHHHHHC
Confidence 3556678899999988 3577788888888888999999888877777552 431 2222111111 0 1
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
...+|+|+-. .+ ...+....+.|+++|+++..
T Consensus 209 ~~gvd~vld~-----~g----~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 209 PDGIDCYFDN-----VG----GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCCcEEEEEC-----CC----HHHHHHHHHhhccCCEEEEE
Confidence 2468888753 22 23457778889999999763
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.2 Score=42.21 Aligned_cols=101 Identities=20% Similarity=0.320 Sum_probs=74.8
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEec
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCG 109 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~ 109 (272)
.|..|+-+| -.-..++.++-. ...++..+|+++..+...++.+.+.|+ ++++...-|+.+.- ...+||+++...
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~~~kFDvfiTDP 229 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDLKRKFDVFITDP 229 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHHHhhCCeeecCc
Confidence 466799888 333444444443 456999999999999999999999998 47999999987744 237999988754
Q ss_pred hhhccChhhHHHHHHHHHhcCccC---cEEEEE
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATH---GLLVLQ 139 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~i~ 139 (272)
+ +.+ ..+..++.+--..||.. |++.++
T Consensus 230 p-eTi--~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 230 P-ETI--KALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred h-hhH--HHHHHHHhccHHHhcCCCccceEeee
Confidence 3 444 45577888877888877 677763
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.46 Score=41.80 Aligned_cols=101 Identities=25% Similarity=0.269 Sum_probs=61.5
Q ss_pred HHcCCCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc---ccC----CCCCC
Q 024096 28 EKARVSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC---DYR----QLPKA 99 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~---d~~----~~~~~ 99 (272)
....+.++.+||-.|+|. |..+..+++..++++++++.++...+.+++. |...-+..... ++. +....
T Consensus 160 ~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~~~~t~~ 235 (349)
T TIGR03201 160 VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF----GADLTLNPKDKSAREVKKLIKAFAKA 235 (349)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCceEecCccccHHHHHHHHHhhccc
Confidence 445678899999999974 6677777877788999999999888777543 43111111111 110 01111
Q ss_pred CCcc----EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 100 NKYD----RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 100 ~~fD----~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
..+| +|+ +..+. ...++...+.|++||++++..
T Consensus 236 ~g~d~~~d~v~-----d~~g~---~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 236 RGLRSTGWKIF-----ECSGS---KPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCCCcCEEE-----ECCCC---hHHHHHHHHHHhcCCeEEEEC
Confidence 2344 444 22222 245666777889999998753
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.12 Score=37.13 Aligned_cols=32 Identities=34% Similarity=0.484 Sum_probs=27.2
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcC
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITL 65 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~ 65 (272)
.+....+|+|||.|.+...|.+. |..-.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE-GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC-CCCcccccc
Confidence 35568999999999999988887 777789996
|
; GO: 0008168 methyltransferase activity |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=94.16 E-value=1 Score=36.65 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=68.2
Q ss_pred HHHHHcCCC-CCCEEEEECCCchH----HHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC-CCC
Q 024096 25 VLIEKARVS-KGQEVLDIGCGWGT----LAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR-QLP 97 (272)
Q Consensus 25 ~l~~~l~~~-~~~~vLDiG~G~G~----~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~-~~~ 97 (272)
.++..+.-. ....++++.|+.|. ++...|.+ .+.++++|-+++......++.+...++.+.++|+.++.. ++.
T Consensus 31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~ 110 (218)
T PF07279_consen 31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVM 110 (218)
T ss_pred HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHH
Confidence 344444432 34688888665432 33333334 788999999999888888888888888767899998843 332
Q ss_pred -CCCCccEEEEechhhccChhhHH-HHHHHHHhcCccCcEEEEE
Q 024096 98 -KANKYDRIISCGMIEHVGHDYME-EFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~-~~l~~~~~~LkpgG~l~i~ 139 (272)
.-...|.++..--. ++.. .+|+.+. +.|.|.+++.
T Consensus 111 ~~~~~iDF~vVDc~~-----~d~~~~vl~~~~--~~~~GaVVV~ 147 (218)
T PF07279_consen 111 PGLKGIDFVVVDCKR-----EDFAARVLRAAK--LSPRGAVVVC 147 (218)
T ss_pred hhccCCCEEEEeCCc-----hhHHHHHHHHhc--cCCCceEEEE
Confidence 33678988875321 2223 4444322 4466777663
|
The function of this family is unknown. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.41 Score=41.98 Aligned_cols=97 Identities=24% Similarity=0.337 Sum_probs=60.3
Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc------CCCCCC
Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY------RQLPKA 99 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~------~~~~~~ 99 (272)
+.....++.+||=.|+| .|..+..+++..+++ +++++.+++..+.+++. |.. .++..+- .+....
T Consensus 154 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~~~ 226 (347)
T PRK10309 154 HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----GAM---QTFNSREMSAPQIQSVLRE 226 (347)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc---eEecCcccCHHHHHHHhcC
Confidence 44556788999999986 455666777777775 78999988877766432 321 2221111 111122
Q ss_pred CCcc-EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 100 NKYD-RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD-~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+| +|+- ..+. ...+....+.|++||++++.
T Consensus 227 ~~~d~~v~d-----~~G~---~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 227 LRFDQLILE-----TAGV---PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CCCCeEEEE-----CCCC---HHHHHHHHHHhhcCCEEEEE
Confidence 4577 4442 3332 34677788899999999874
|
|
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.14 Score=43.84 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=56.9
Q ss_pred EEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC--------CCCCCccEEEEe
Q 024096 38 VLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL--------PKANKYDRIISC 108 (272)
Q Consensus 38 vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~--------~~~~~fD~V~~~ 108 (272)
-+|||.|.-.+--.+..+ .+...+++|++...+..|..+..++++...+.+++.+...- .++..||..+|+
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 479988876655545444 67789999999999999999999999988888887754221 134569999998
Q ss_pred chhh
Q 024096 109 GMIE 112 (272)
Q Consensus 109 ~~~~ 112 (272)
..+.
T Consensus 186 PPFf 189 (419)
T KOG2912|consen 186 PPFF 189 (419)
T ss_pred Cchh
Confidence 7653
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.16 Score=44.37 Aligned_cols=99 Identities=28% Similarity=0.407 Sum_probs=64.0
Q ss_pred HHcCCCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc----CCCCCCCCc
Q 024096 28 EKARVSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY----RQLPKANKY 102 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~----~~~~~~~~f 102 (272)
....+.++.+||-.|+|. |..+..+++..+.+++++..+++..+.+++. +...-+.....++ ........+
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCC
Confidence 455677899999998874 7777888888889999998888877776443 3211111111111 111133568
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
|+|+... +. ...+..+.+.|+++|+++.
T Consensus 229 d~vld~~-----g~---~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 229 DVVIDAT-----GN---PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CEEEECC-----CC---HHHHHHHHHHHhcCCEEEE
Confidence 9998642 11 2456777888999999875
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.28 Score=39.06 Aligned_cols=92 Identities=17% Similarity=0.342 Sum_probs=62.2
Q ss_pred CC-CEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCC--CCCeEEEEcccCCCC-----C-----C
Q 024096 34 KG-QEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGL--QDHIRFYLCDYRQLP-----K-----A 99 (272)
Q Consensus 34 ~~-~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~~~-----~-----~ 99 (272)
++ ..|+.+|||.=.....+... .+.+++-+|. |..++.-++.+...+. +.+.+++.+|+.+.. . .
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~ 155 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDP 155 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-T
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCC
Confidence 44 49999999998888888876 3677888885 7777777777666531 123567999998632 1 3
Q ss_pred CCccEEEEechhhccChhhHHHHHHHH
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCC 126 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~ 126 (272)
+..-++++.+++.+++.+....+++.+
T Consensus 156 ~~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 156 DRPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp TSEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 456688888999999888777777765
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.87 Score=38.34 Aligned_cols=97 Identities=23% Similarity=0.277 Sum_probs=62.1
Q ss_pred HHcCCCCCCEEEEECCCc-hHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE
Q 024096 28 EKARVSKGQEVLDIGCGW-GTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRI 105 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V 105 (272)
....+.++.+||-.|+|. |..+..+++..+.+ +++++.+++..+.+++. |..+.+..... .......+|+|
T Consensus 91 ~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~---~~~~~~~~d~v 163 (277)
T cd08255 91 RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPVAADTA---DEIGGRGADVV 163 (277)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccccccch---hhhcCCCCCEE
Confidence 355677899999999875 66777777776777 99999988887766543 31111111110 11123468988
Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+..-. . ...+....+.|+++|+++..
T Consensus 164 l~~~~-----~---~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 164 IEASG-----S---PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEccC-----C---hHHHHHHHHHhcCCcEEEEE
Confidence 85311 0 23566677889999998863
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.97 Score=40.12 Aligned_cols=102 Identities=16% Similarity=0.231 Sum_probs=63.0
Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE--cccCC-CC--CC
Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYL--CDYRQ-LP--KA 99 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~--~d~~~-~~--~~ 99 (272)
.+...+.++.+||=.|+| .|..+..+++..++ +|+++|.+++..+.+++. |...-+.... .++.+ +. ..
T Consensus 178 ~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 178 LNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GATDCVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCeEEcccccchhHHHHHHHHhC
Confidence 345667889999999987 45666777877777 799999999888877553 4311111110 01100 10 11
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEEe
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQF 140 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 140 (272)
+.+|+|+-. .+. ...+....+.++++ |++++..
T Consensus 254 ~g~d~vid~-----~G~---~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 254 GGVDYSFEC-----IGN---VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CCCCEEEEC-----CCC---HHHHHHHHHHhhcCCCeEEEEe
Confidence 368888753 221 24566677788886 9887643
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.8 Score=39.98 Aligned_cols=100 Identities=23% Similarity=0.317 Sum_probs=64.6
Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-ccCC-CC--CCCC
Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-DYRQ-LP--KANK 101 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~-~~--~~~~ 101 (272)
+...+.+|.+||=.|+ |.|..+..+++..|+++++++.+++..+.+++.+ |...-+..... +..+ +. ....
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHHHHHhCCCC
Confidence 4456789999999986 5777888888888889999998888777776522 43111111111 1111 01 1246
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|+|+-. .+ ...+....+.|+++|+++..
T Consensus 222 vd~v~d~-----~g----~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 222 IDIYFDN-----VG----GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred cEEEEEC-----CC----HHHHHHHHHHhccCcEEEEe
Confidence 8888753 32 23566778889999999863
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=93.35 E-value=1.1 Score=38.90 Aligned_cols=97 Identities=22% Similarity=0.178 Sum_probs=62.5
Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccE
Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDR 104 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~ 104 (272)
....+.++.+||-.|+| .|..+..+++..+.++++++.++...+.+++. |.. .++...-.... ..+.+|+
T Consensus 156 ~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~d~ 228 (330)
T cd08245 156 RDAGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL----GAD---EVVDSGAELDEQAAAGGADV 228 (330)
T ss_pred HhhCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----CCc---EEeccCCcchHHhccCCCCE
Confidence 34567888999999987 77777777777788999999998877776432 321 11111111110 1246898
Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
++... +. ...+..+.+.|+++|.++..
T Consensus 229 vi~~~-----~~---~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 229 ILVTV-----VS---GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred EEECC-----Cc---HHHHHHHHHhcccCCEEEEE
Confidence 87531 11 23566678889999998864
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.6 Score=41.69 Aligned_cols=97 Identities=25% Similarity=0.304 Sum_probs=60.3
Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-----ccCC-CC--
Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-----DYRQ-LP-- 97 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-----d~~~-~~-- 97 (272)
+...+.++.+||-.|+| .|..+..+++..+. .++++|.++...+.+++. |.. .++.. +..+ +.
T Consensus 187 ~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----Ga~---~~i~~~~~~~~~~~~v~~~ 259 (378)
T PLN02827 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----GVT---DFINPNDLSEPIQQVIKRM 259 (378)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc---EEEcccccchHHHHHHHHH
Confidence 34567889999999886 45566667776676 588999888877777543 431 12211 1111 00
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEE
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQ 139 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 139 (272)
....+|+|+-. .+. ...+....+.+++| |++++.
T Consensus 260 ~~~g~d~vid~-----~G~---~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 260 TGGGADYSFEC-----VGD---TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred hCCCCCEEEEC-----CCC---hHHHHHHHHhhccCCCEEEEE
Confidence 11368888753 321 23566677788998 999863
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.44 Score=39.94 Aligned_cols=88 Identities=11% Similarity=0.123 Sum_probs=62.6
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-CCCccEEEEec
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK-ANKYDRIISCG 109 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~-~~~fD~V~~~~ 109 (272)
.+.+|+...|+|.-.|+++-.|.++ +..|+++|..+ |.+.. -.. +.|+....|..+..+ ....|-.+|..
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr-~m~V~aVDng~-ma~sL----~dt---g~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR-NMRVYAVDNGP-MAQSL----MDT---GQVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhc-ceEEEEeccch-hhhhh----hcc---cceeeeeccCcccccCCCCCceEEeeh
Confidence 4669999999999999999999997 88999999654 22221 112 468888888877765 57888888853
Q ss_pred hhhccChhhHHHHHHHHHhcCccC
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATH 133 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~Lkpg 133 (272)
+ +.+..+-..+..+|..|
T Consensus 279 V------EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 279 V------EKPARVAALIAKWLVNG 296 (358)
T ss_pred h------cCcHHHHHHHHHHHHcc
Confidence 3 33345555555565554
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.54 Score=40.65 Aligned_cols=87 Identities=21% Similarity=0.145 Sum_probs=55.5
Q ss_pred CCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEech
Q 024096 33 SKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGM 110 (272)
Q Consensus 33 ~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~ 110 (272)
.++.+||=+||| .|.++..+++..+++ +.++|.++..++.+... . ++ |..+. ....+|+|+-.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~-~~~g~Dvvid~-- 207 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD-PRRDYRAIYDA-- 207 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc-cCCCCCEEEEC--
Confidence 357789999987 566777788776765 66788887666555421 1 11 11110 12468988753
Q ss_pred hhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 111 IEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
.+. ...++.+.+.|+++|++++.-
T Consensus 208 ---~G~---~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 208 ---SGD---PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ---CCC---HHHHHHHHHhhhcCcEEEEEe
Confidence 322 245677888999999998743
|
|
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.35 Score=36.84 Aligned_cols=112 Identities=13% Similarity=-0.024 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC
Q 024096 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272)
Q Consensus 17 ~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272)
.+|+.-++++.++....+| -|||+|=|.|..=.+|.+. ++.+|+.+|-.-..-.- -.|+.-.++.+|+.+
T Consensus 12 taQR~~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~--------~~P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 12 TAQRDCLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPS--------STPPEEDLILGDIRE 82 (160)
T ss_dssp HHHHHHHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GG--------G---GGGEEES-HHH
T ss_pred HHHHHHHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCC--------CCCchHheeeccHHH
Confidence 4788889999999887665 7999999999999999988 89999999953211100 012233566666654
Q ss_pred CC-----CCCCccEEEEechhhccChhhH---HHHHHHHHhcCccCcEEEE
Q 024096 96 LP-----KANKYDRIISCGMIEHVGHDYM---EEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 96 ~~-----~~~~fD~V~~~~~~~~~~~~~~---~~~l~~~~~~LkpgG~l~i 138 (272)
.. ...+.-++......++- +++. ..+-.-+..+|.|||.++-
T Consensus 83 tl~~~~~~g~~a~laHaD~G~g~~-~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 83 TLPALARFGAGAALAHADIGTGDK-EKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHHHHHHH-S-EEEEEE----S-H-HHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HhHHHHhcCCceEEEEeecCCCCc-chhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 32 11233333332222221 1111 2233446789999999874
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.1 Score=39.82 Aligned_cols=99 Identities=21% Similarity=0.298 Sum_probs=62.5
Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-----cCC-CC-
Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD-----YRQ-LP- 97 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d-----~~~-~~- 97 (272)
.+...++++++||=.|+| .|..+..+++..++ +|++++.++...+.+++. |.. .++... +.+ +.
T Consensus 179 ~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l----Ga~---~~i~~~~~~~~~~~~v~~ 251 (368)
T cd08300 179 LNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF----GAT---DCVNPKDHDKPIQQVLVE 251 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCC---EEEcccccchHHHHHHHH
Confidence 455667889999999876 45566677777777 799999999887777542 431 222111 101 00
Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEEe
Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQF 140 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 140 (272)
..+.+|+|+-. .+. ...+....+.|+++ |++++..
T Consensus 252 ~~~~g~d~vid~-----~g~---~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 252 MTDGGVDYTFEC-----IGN---VKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred HhCCCCcEEEEC-----CCC---hHHHHHHHHhhccCCCeEEEEc
Confidence 12368988753 221 24566677788887 9888643
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.9 Score=41.22 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=57.3
Q ss_pred HHHHHHHcCCC-CCCEEEEECCCchH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 23 VSVLIEKARVS-KGQEVLDIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 23 ~~~l~~~l~~~-~~~~vLDiG~G~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
++.+.+..... .|.+|+=+|+|.=+ .....++..+++|+.+|.++.....+.. .| ..+. ++.+. ..
T Consensus 199 ~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G----~~v~--~l~ea--l~ 266 (425)
T PRK05476 199 LDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DG----FRVM--TMEEA--AE 266 (425)
T ss_pred HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cC----CEec--CHHHH--Hh
Confidence 34444333433 78999999999544 3333344478899999999865443322 12 2221 22222 14
Q ss_pred CccEEEEechhhccChhhHHHHHH-HHHhcCccCcEEEEE
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFG-CCESLLATHGLLVLQ 139 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~i~ 139 (272)
.+|+|+... +. ...+. .....+|+|++++..
T Consensus 267 ~aDVVI~aT-----G~---~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 267 LGDIFVTAT-----GN---KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred CCCEEEECC-----CC---HHHHHHHHHhcCCCCCEEEEc
Confidence 689998742 11 23444 577889999988764
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.32 Score=41.79 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=72.3
Q ss_pred CCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh
Q 024096 34 KGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272)
Q Consensus 34 ~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272)
++.+|.-+|.| .|..+..++.-.+++|+.+|+|...+........ .+++.+-.+...+. .-.+.|+|+..-.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVLI 241 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVLI 241 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEEe
Confidence 34578888888 5667777776678999999999887777665542 36777777766665 34688999876544
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.-- +.+.-..+++...||||+.++=
T Consensus 242 pga--kaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 242 PGA--KAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred cCC--CCceehhHHHHHhcCCCcEEEE
Confidence 443 5567788888999999998873
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.34 Score=43.26 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=42.3
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVR 78 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~ 78 (272)
-.+.|++.++++||-|.+|..+...++.+. ..+|++||+||.+....+-+..
T Consensus 27 D~~aL~i~~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 27 DMEALNIGPDDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHHhCCCCCCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHHHH
Confidence 356788999999999988877777777664 5799999999999888766543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.34 Score=42.29 Aligned_cols=97 Identities=27% Similarity=0.337 Sum_probs=61.9
Q ss_pred HHcCCCCCCEEEEECCCc-hHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc------cCCCCCC
Q 024096 28 EKARVSKGQEVLDIGCGW-GTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD------YRQLPKA 99 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d------~~~~~~~ 99 (272)
....+.++.+||-.|+|. |..+..+++..+.+ +++++.++...+.+++ .+.. .++..+ +......
T Consensus 153 ~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~---~~~~~~~~~~~~~~~~~~~ 225 (343)
T cd08236 153 RLAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD---DTINPKEEDVEKVRELTEG 225 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEecCccccHHHHHHHhCC
Confidence 345567888999998765 66777778777776 9999988877666543 2321 222111 1112233
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+|+|+.. .+. ...+..+.+.|+++|+++..
T Consensus 226 ~~~d~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 226 RGADLVIEA-----AGS---PATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCCCEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEE
Confidence 459999864 211 34567778889999998763
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.85 Score=39.82 Aligned_cols=97 Identities=23% Similarity=0.325 Sum_probs=61.5
Q ss_pred HHcCCCCC--CEEEEECC--CchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----
Q 024096 28 EKARVSKG--QEVLDIGC--GWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----- 97 (272)
Q Consensus 28 ~~l~~~~~--~~vLDiG~--G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----- 97 (272)
+...+.++ .+||=.|+ |.|..+..+++..|+ +|++++.+++..+.+++.+ |.. .++..+-.++.
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~---~vi~~~~~~~~~~i~~ 219 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFD---AAINYKTDNVAERLRE 219 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCc---EEEECCCCCHHHHHHH
Confidence 33445555 89999985 577888888888787 8999999887777665532 432 22221111111
Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+..+|+|+-. .+. ..+....+.|+++|+++..
T Consensus 220 ~~~~gvd~vid~-----~g~----~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 220 LCPEGVDVYFDN-----VGG----EISDTVISQMNENSHIILC 253 (345)
T ss_pred HCCCCceEEEEC-----CCc----HHHHHHHHHhccCCEEEEE
Confidence 12468988853 221 1246677889999999863
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.73 E-value=2 Score=37.17 Aligned_cols=97 Identities=20% Similarity=0.240 Sum_probs=63.0
Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-----CCCC
Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-----PKAN 100 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-----~~~~ 100 (272)
+...+.++.+||-+|+| .|..+..+++..+.+ +++++.+++..+.+++. +.. .++..+-... ....
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT---ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe---EEecCCCCCHHHHHHhcCC
Confidence 45567788999999876 366667777776776 89999998877776442 321 2222221111 1235
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+|+|+.. .+. ...+..+.+.|+++|+++..
T Consensus 226 ~vd~v~~~-----~~~---~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 226 GFDVVIEA-----TGV---PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred CCcEEEEC-----CCC---hHHHHHHHHHHhcCCEEEEE
Confidence 68999863 211 34666778889999998764
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.12 Score=44.38 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=39.4
Q ss_pred CeEEEEcccCCCC---CCCCccEEEEechhhc------c----Ch----hhHHHHHHHHHhcCccCcEEEEE
Q 024096 85 HIRFYLCDYRQLP---KANKYDRIISCGMIEH------V----GH----DYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 85 ~i~~~~~d~~~~~---~~~~fD~V~~~~~~~~------~----~~----~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+..++++|..+.. ++++||+|++.....- . .. +-....+.++.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578889987743 5679999999765421 0 00 11246889999999999999984
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.95 Score=39.58 Aligned_cols=97 Identities=23% Similarity=0.266 Sum_probs=63.1
Q ss_pred HHcCCCCCCEEEEECCCc-hHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc----------CC
Q 024096 28 EKARVSKGQEVLDIGCGW-GTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY----------RQ 95 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~----------~~ 95 (272)
....+.++.+||-.|+|. |..+..+++..+.+ ++.++.+++..+.+++. +.. .++..+- .+
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~ 228 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GAT---HTVNVRTEDTPESAEKIAE 228 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc---EEeccccccchhHHHHHHH
Confidence 556678899999988764 66777788777776 89998888877766542 321 2221111 11
Q ss_pred CCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 96 LPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 96 ~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
......+|+|+.... . ...+....+.|+++|+++..
T Consensus 229 ~~~~~~~d~vld~~g-----~---~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 229 LLGGKGPDVVIECTG-----A---ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred HhCCCCCCEEEECCC-----C---HHHHHHHHHHhhcCCEEEEE
Confidence 123356999986421 1 23567778889999998753
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.67 E-value=2.4 Score=36.47 Aligned_cols=96 Identities=20% Similarity=0.336 Sum_probs=62.4
Q ss_pred HHHHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccE
Q 024096 26 LIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDR 104 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~ 104 (272)
+++...+.++.+||=.|+| .|..+..+++..|.++++++.+++..+.+++ .|.. .+ . +.........+|+
T Consensus 147 ~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~-~~--~--~~~~~~~~~~~d~ 217 (319)
T cd08242 147 ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVE-TV--L--PDEAESEGGGFDV 217 (319)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc-EE--e--CccccccCCCCCE
Confidence 3455667888999999865 3445555666678899999999988877765 2432 11 1 1111123356999
Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
|+-. .+. ...+....+.|+++|+++.
T Consensus 218 vid~-----~g~---~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 218 VVEA-----TGS---PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred EEEC-----CCC---hHHHHHHHHHhhcCCEEEE
Confidence 9864 221 2356667778899999986
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=92.35 E-value=1.5 Score=39.70 Aligned_cols=98 Identities=9% Similarity=0.079 Sum_probs=62.6
Q ss_pred HHHHHHHcCC-CCCCEEEEECCCchH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 23 VSVLIEKARV-SKGQEVLDIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 23 ~~~l~~~l~~-~~~~~vLDiG~G~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
++.+.+..++ .+|++|+=+|+|+=+ ....+++..|++|+.+|.++...+.|+.. |. ... +..+. -.
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G~----~~~--~~~e~--v~ 256 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----GY----EVM--TMEEA--VK 256 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----CC----EEc--cHHHH--Hc
Confidence 4666666554 578999999999644 44444555788999999998877766542 32 222 11111 13
Q ss_pred CccEEEEechhhccChhhHHHHHHH-HHhcCccCcEEEEEe
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGC-CESLLATHGLLVLQF 140 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~i~~ 140 (272)
.+|+|+... +. ...+.. ..+.+|+||+++...
T Consensus 257 ~aDVVI~at-----G~---~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 257 EGDIFVTTT-----GN---KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCCEEEECC-----CC---HHHHHHHHHhcCCCCcEEEEeC
Confidence 579998642 21 234444 478899999997643
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.4 Score=39.11 Aligned_cols=100 Identities=24% Similarity=0.330 Sum_probs=61.3
Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc------cCCCCC
Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD------YRQLPK 98 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d------~~~~~~ 98 (272)
.+...+.++.+||=+|+| .|..+..+++..+. +|++++.++...+.+++. |...-+.....+ +.+...
T Consensus 177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----GATDFINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCCcEeccccccchHHHHHHHHhC
Confidence 345567889999999886 44566667777777 799999998887777542 331111111100 011112
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 139 (272)
..+|+|+-. .+. ...+....+.|+++ |++++.
T Consensus 253 -~g~d~vid~-----~g~---~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 253 -GGVDYSFEC-----TGN---ADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred -CCCCEEEEC-----CCC---hHHHHHHHHhcccCCCEEEEE
Confidence 468988853 221 24566677788885 998864
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.24 E-value=1.5 Score=38.76 Aligned_cols=100 Identities=21% Similarity=0.277 Sum_probs=61.8
Q ss_pred HHHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-----cCC-CC
Q 024096 26 LIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD-----YRQ-LP 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d-----~~~-~~ 97 (272)
+.+...+.++.+||=.|+| .|..+..+++..++ +|++++.+++..+.+++. |.. .++..+ +.+ +.
T Consensus 179 ~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~v~ 251 (369)
T cd08301 179 AWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF----GVT---EFVNPKDHDKPVQEVIA 251 (369)
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEEcccccchhHHHHHH
Confidence 3444567889999999876 45566677777777 899999999887777542 431 222111 100 00
Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEEe
Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQF 140 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 140 (272)
..+.+|+|+-. .+. ...+....+.++++ |++++..
T Consensus 252 ~~~~~~~d~vid~-----~G~---~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 252 EMTGGGVDYSFEC-----TGN---IDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred HHhCCCCCEEEEC-----CCC---hHHHHHHHHHhhcCCCEEEEEC
Confidence 12368887743 221 24556667778896 9988643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.95 Score=39.72 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=62.8
Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-------CC
Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-------LP 97 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-------~~ 97 (272)
+....+.++.+||-.|+| .|..+..+++..+. .+++++.+++..+.+++ .|.. .++..+-.+ +.
T Consensus 159 ~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~ 231 (351)
T cd08285 159 AELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLT 231 (351)
T ss_pred HHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHh
Confidence 345567789999999877 55666777777676 68999998877766664 2431 222111111 11
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+.. .+. ...+..+.+.|+++|+++..
T Consensus 232 ~~~~~d~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 232 GGKGVDAVIIA-----GGG---QDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCCCCcEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEe
Confidence 23468988853 211 24677788889999998853
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.11 E-value=2.6 Score=35.39 Aligned_cols=114 Identities=22% Similarity=0.299 Sum_probs=77.5
Q ss_pred CCCCHHHHHHHHHH------HHHHHcCCCCCCEEEEE--CCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 024096 11 EHEDLEVGQMRKVS------VLIEKARVSKGQEVLDI--GCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL 82 (272)
Q Consensus 11 ~~~~l~~aq~~~~~------~l~~~l~~~~~~~vLDi--G~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~ 82 (272)
++.++..+....+. .+.+....++|.+||-- ..|.|.+..++++..++++++.-.+.+-.+.++++ |.
T Consensus 117 e~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~ 192 (336)
T KOG1197|consen 117 EAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GA 192 (336)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CC
Confidence 34566666655553 34566788999988865 45677888888888888999998888777777765 65
Q ss_pred CCCeEEEEcccCCC----CCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 83 QDHIRFYLCDYRQL----PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 83 ~~~i~~~~~d~~~~----~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
..-|.....|+.+. ......|+++-. ++ ...++.-...|||+|+++
T Consensus 193 ~h~I~y~~eD~v~~V~kiTngKGVd~vyDs-----vG----~dt~~~sl~~Lk~~G~mV 242 (336)
T KOG1197|consen 193 EHPIDYSTEDYVDEVKKITNGKGVDAVYDS-----VG----KDTFAKSLAALKPMGKMV 242 (336)
T ss_pred cceeeccchhHHHHHHhccCCCCceeeecc-----cc----chhhHHHHHHhccCceEE
Confidence 44455666664332 134567877743 32 245566677899999987
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.49 Score=38.58 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=54.8
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272)
.+.+.+..+.-..+-|.+||.|.|++++.+.+..-.+...+|+++..+.-.+-..+.. +.+..++++|+....
T Consensus 39 T~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 39 TDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLRFK 111 (326)
T ss_pred HHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC--CcceEEeccccceeh
Confidence 3556666665567899999999999999999874457889999888877766555433 347888888886653
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.86 Score=43.46 Aligned_cols=89 Identities=15% Similarity=0.069 Sum_probs=59.1
Q ss_pred CEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEE
Q 024096 36 QEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIIS 107 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~ 107 (272)
.+|+=+|+|. .+..+++. .+.+++.+|.+++.++.+++. ...++.+|..+.. .-++.|.+++
T Consensus 401 ~~vII~G~Gr--~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGFGR--FGQVIGRLLMANKMRITVLERDISAVNLMRKY--------GYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecCch--HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--------CCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 4677777663 33333332 477999999999998887652 4688999998865 3367888887
Q ss_pred echhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 108 CGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
. .++++....+-...+.+.|..+++..
T Consensus 471 ~-----~~d~~~n~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 471 T-----CNEPEDTMKIVELCQQHFPHLHILAR 497 (601)
T ss_pred E-----eCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4 23233333444445667888888764
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.21 Score=37.10 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=45.8
Q ss_pred CeEEEEcccCCCC--CCCCccEEEEechhhccChhh-HHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhc
Q 024096 85 HIRFYLCDYRQLP--KANKYDRIISCGMIEHVGHDY-MEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEY 161 (272)
Q Consensus 85 ~i~~~~~d~~~~~--~~~~fD~V~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 161 (272)
.+.+..+|+.+.- ....+|+|+...--....++- -.++++++.++++|||.+.- +
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T--y-------------------- 89 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT--Y-------------------- 89 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE--S--------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE--e--------------------
Confidence 4567778875533 347899999875221111010 16899999999999998763 1
Q ss_pred ccCCCCCCCHHHHHHHhhcCCCcEEEEEEecC
Q 024096 162 IFPGGCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 162 ~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272)
+....++..+.++||.|....-.+
T Consensus 90 --------s~a~~Vr~~L~~aGF~v~~~~g~g 113 (124)
T PF05430_consen 90 --------SSAGAVRRALQQAGFEVEKVPGFG 113 (124)
T ss_dssp ----------BHHHHHHHHHCTEEEEEEE-ST
T ss_pred --------echHHHHHHHHHcCCEEEEcCCCC
Confidence 111223344556999998877655
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.92 E-value=1.2 Score=38.99 Aligned_cols=100 Identities=23% Similarity=0.247 Sum_probs=61.7
Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC----CCCCCCC
Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR----QLPKANK 101 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~----~~~~~~~ 101 (272)
....+.++.+||=.|+| .|..+..+++..+. ++++++.+++..+.+++. |...-+.....++. +......
T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~ 241 (351)
T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGG 241 (351)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCC
Confidence 55567788999999865 45566667777777 899999888877777542 33111111111111 1112245
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|+|+-.. +. ...++.+.+.|+++|+++..
T Consensus 242 ~d~vid~~-----g~---~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 242 VDVSFDCA-----GV---QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CCEEEECC-----CC---HHHHHHHHHhccCCCEEEEE
Confidence 89998632 11 23567778889999998763
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.51 Score=41.19 Aligned_cols=99 Identities=24% Similarity=0.274 Sum_probs=60.1
Q ss_pred HcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc----CCCCCCCCc
Q 024096 29 KARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY----RQLPKANKY 102 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~----~~~~~~~~f 102 (272)
.....++.+||-.|+| .|..+..+++..+. .+++++.++...+.+++. |...-+.....++ ........+
T Consensus 162 ~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 162 LAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNGDIVEQILELTGGRGV 237 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCC
Confidence 3456788899998876 46777778877674 888888877666665543 3110011111111 111123569
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
|+|+... +. ...+....+.|+++|+++..
T Consensus 238 d~vld~~-----g~---~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 238 DCVIEAV-----GF---EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cEEEEcc-----CC---HHHHHHHHHHhhcCCEEEEE
Confidence 9888531 11 24677778889999998753
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.83 Score=38.56 Aligned_cols=75 Identities=15% Similarity=0.235 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc------CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT------GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~------~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272)
.+..|.+.--+.+...++|+|||.|.++.++++.. ...++.||-..... .+...++.......++=+..|+.+
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeec
Confidence 34445554445778899999999999999998863 35789999754322 333344433311245556667666
Q ss_pred CC
Q 024096 96 LP 97 (272)
Q Consensus 96 ~~ 97 (272)
+.
T Consensus 85 l~ 86 (259)
T PF05206_consen 85 LD 86 (259)
T ss_pred cc
Confidence 55
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=91.67 E-value=3.2 Score=38.66 Aligned_cols=105 Identities=14% Similarity=0.240 Sum_probs=69.1
Q ss_pred CCCEEEEECCCchHHHHHHHHc--c---CCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC---CCCCccE
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ--T---GCKYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYRQLP---KANKYDR 104 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~--~---~~~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~---~~~~fD~ 104 (272)
++..|.|..||+|++.....+. . ...++|.+..+.+...++.++...+.. +......+|....+ ...+||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 5679999999999988754432 1 246899999999999999887655542 23344445543322 2356888
Q ss_pred EEEechhhc--------------------c-Ch--hhHHHHHHHHHhcCccCcEEEE
Q 024096 105 IISCGMIEH--------------------V-GH--DYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 105 V~~~~~~~~--------------------~-~~--~~~~~~l~~~~~~LkpgG~l~i 138 (272)
|+++..+.- + ++ +.=..++..+...|++||+..+
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ai 353 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAI 353 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEE
Confidence 887763311 1 10 1113577778899999998655
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.48 Score=41.04 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=50.7
Q ss_pred EEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEEEechhh
Q 024096 37 EVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRIISCGMIE 112 (272)
Q Consensus 37 ~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V~~~~~~~ 112 (272)
+++|+-||.|+++.-+.+.....+.++|+++...+.-+.+.. ....+|+.++. +. .+|+++......
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccCCc
Confidence 799999999999998888632467899999998888777752 88899998887 22 599999886544
Q ss_pred c
Q 024096 113 H 113 (272)
Q Consensus 113 ~ 113 (272)
-
T Consensus 73 ~ 73 (335)
T PF00145_consen 73 G 73 (335)
T ss_dssp T
T ss_pred e
Confidence 3
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=91.63 E-value=1.1 Score=40.96 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=59.3
Q ss_pred HHHHHHHcCC-CCCCEEEEECCCchH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 23 VSVLIEKARV-SKGQEVLDIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 23 ~~~l~~~l~~-~~~~~vLDiG~G~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
++.+.+..++ -.|.+|+=+|+|+=+ .....++..|++|+++|.++.....+... |. .+. +..+. -.
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~----G~----~vv--~leEa--l~ 308 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME----GY----QVL--TLEDV--VS 308 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc----CC----eec--cHHHH--Hh
Confidence 4555555453 468999999999544 33333334789999999988654444321 22 222 22221 13
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..|+|+....-.+ -+..+....||+|+.++..
T Consensus 309 ~ADVVI~tTGt~~-------vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 309 EADIFVTTTGNKD-------IIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred hCCEEEECCCCcc-------chHHHHHhcCCCCCEEEEc
Confidence 5799987432222 2346677889999999864
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=91.53 E-value=1.6 Score=38.39 Aligned_cols=100 Identities=26% Similarity=0.282 Sum_probs=59.3
Q ss_pred HHcCC-CCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-------CCCC
Q 024096 28 EKARV-SKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY-------RQLP 97 (272)
Q Consensus 28 ~~l~~-~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~-------~~~~ 97 (272)
..+.. .++.+||=.|+| .|..+..+++..+. ++++++.+++..+.+++ .|...-+.....+. .+..
T Consensus 170 ~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~ 245 (361)
T cd08231 170 DRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDIT 245 (361)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHHh
Confidence 44443 478899998875 44455666777778 99999988876665543 34321111111111 1111
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+-. .+. ...+....+.|+++|+++..
T Consensus 246 ~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 246 GGRGADVVIEA-----SGH---PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CCCCCcEEEEC-----CCC---hHHHHHHHHHhccCCEEEEE
Confidence 23568988853 111 23566677889999999863
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.51 E-value=1.9 Score=37.35 Aligned_cols=102 Identities=22% Similarity=0.231 Sum_probs=62.5
Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEE-EcccCC-CC--CCCC
Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFY-LCDYRQ-LP--KANK 101 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~-~~d~~~-~~--~~~~ 101 (272)
+...++.||.+|--+|.| .|+++..+|+..+.+|+++|-+..-.+.+-+.+ |-+.-+.+. ..|..+ +. -+.-
T Consensus 174 Lk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L---GAd~fv~~~~d~d~~~~~~~~~dg~ 250 (360)
T KOG0023|consen 174 LKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL---GADVFVDSTEDPDIMKAIMKTTDGG 250 (360)
T ss_pred hHHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc---CcceeEEecCCHHHHHHHHHhhcCc
Confidence 344567799888888754 899999999999999999999876555554443 422111111 111111 11 2334
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
.|.|.+. . ...+..+.+.||++|.+++.-.
T Consensus 251 ~~~v~~~--a--------~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 251 IDTVSNL--A--------EHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred ceeeeec--c--------ccchHHHHHHhhcCCEEEEEeC
Confidence 4555532 1 2344556678899999998543
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.25 E-value=1.4 Score=37.73 Aligned_cols=89 Identities=24% Similarity=0.124 Sum_probs=55.5
Q ss_pred CEEEEECCC--chHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhh
Q 024096 36 QEVLDIGCG--WGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIE 112 (272)
Q Consensus 36 ~~vLDiG~G--~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~ 112 (272)
.+|+=+|.| -|.++..+.+. ....++|.|.+....+.+.+. |+ .....+..........|+|+..-.+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----gv----~d~~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----GV----IDELTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----Cc----ccccccchhhhhcccCCEEEEeccHH
Confidence 578888888 34455666665 445679999988777776643 22 22211111011235679999865444
Q ss_pred ccChhhHHHHHHHHHhcCccCcEEE
Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
....+++++...|++|..+.
T Consensus 76 -----~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 76 -----ATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred -----HHHHHHHHhcccCCCCCEEE
Confidence 44788888888888886543
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=91.24 E-value=2.8 Score=37.65 Aligned_cols=107 Identities=18% Similarity=0.147 Sum_probs=63.6
Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc---cc----CCCCC
Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLC---DY----RQLPK 98 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~---d~----~~~~~ 98 (272)
....+.++++||=.|+| .|..+..+++..+++ ++.+|.++...+.+++. |.. .+... +. .+...
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~---~v~~~~~~~~~~~v~~~~~ 251 (393)
T TIGR02819 179 VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE---TVDLSKDATLPEQIEQILG 251 (393)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe---EEecCCcccHHHHHHHHcC
Confidence 34567788999888886 455666777766665 56678888777777653 431 12111 11 11112
Q ss_pred CCCccEEEEechhhcc------ChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 99 ANKYDRIISCGMIEHV------GHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~------~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
...+|+|+-.-..... ...+....++...+.+++||++++.-.
T Consensus 252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 2468988753321100 001112478888899999999998544
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=91.09 E-value=6.4 Score=33.96 Aligned_cols=95 Identities=22% Similarity=0.181 Sum_probs=60.2
Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEE
Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRII 106 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~ 106 (272)
+...+.++.+||=.|+| .|..+..+++..+.+++.++.++...+.+++ .|.. .+... ... ....+|+++
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~--~~~-~~~~vD~vi 230 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGAD---WAGDS--DDL-PPEPLDAAI 230 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCc---EEecc--Ccc-CCCcccEEE
Confidence 55567788889888876 3344555666678899999988876666643 2321 11111 111 234688877
Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
.... . ...++.+.+.|+++|+++...
T Consensus 231 ~~~~---~-----~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 231 IFAP---V-----GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EcCC---c-----HHHHHHHHHHhhcCCEEEEEc
Confidence 5311 1 246777889999999998643
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=91.02 E-value=2.3 Score=40.70 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=60.4
Q ss_pred CCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEe
Q 024096 35 GQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIISC 108 (272)
Q Consensus 35 ~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~~ 108 (272)
..+|+=+|||. |.......++.+.+++.+|.+++.++.+++. ...++.+|..+.. .-++.|.+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence 35788888884 3322222222477899999999998888652 4678999998875 23578888874
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.++++....+-...+.+.|+-.++..
T Consensus 472 -----~~d~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 472 -----IDDPQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred -----eCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 23333344444455556788777653
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=90.87 E-value=2.3 Score=38.38 Aligned_cols=96 Identities=13% Similarity=0.144 Sum_probs=57.6
Q ss_pred HHHHHHcC-CCCCCEEEEECCCchH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 024096 24 SVLIEKAR-VSKGQEVLDIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272)
Q Consensus 24 ~~l~~~l~-~~~~~~vLDiG~G~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272)
+.+.+..+ ...|.+|+=+|+|.=+ .....++..+++|+++|.++.....+.. .| ..+. +..+. -..
T Consensus 183 ~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G----~~v~--~leea--l~~ 250 (406)
T TIGR00936 183 DGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DG----FRVM--TMEEA--AKI 250 (406)
T ss_pred HHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cC----CEeC--CHHHH--Hhc
Confidence 44444433 3578999999999644 4444444478999999998865433332 22 2222 22221 135
Q ss_pred ccEEEEechhhccChhhHHHHHH-HHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFG-CCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~i~ 139 (272)
.|+|+.... . ..++. +....+|+|++++..
T Consensus 251 aDVVItaTG-----~---~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 251 GDIFITATG-----N---KDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred CCEEEECCC-----C---HHHHHHHHHhcCCCCcEEEEE
Confidence 699876421 1 34443 477889999988864
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.81 Score=35.16 Aligned_cols=54 Identities=11% Similarity=0.197 Sum_probs=32.3
Q ss_pred EECCCch--HHHHHHH--Hc-cCCEEEEEcCCHHHHHHHHHH--HHHcCCCCCeEEEEccc
Q 024096 40 DIGCGWG--TLAIEIV--KQ-TGCKYTGITLSEEQLKYAEIK--VREAGLQDHIRFYLCDY 93 (272)
Q Consensus 40 DiG~G~G--~~~~~l~--~~-~~~~v~gvd~s~~~~~~a~~~--~~~~g~~~~i~~~~~d~ 93 (272)
|||++.| .....+. .. ++.+++++|++|...+..+.+ +..+.....+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 6655553 23 678999999999999998888 55443323355555443
|
; PDB: 2PY6_A. |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.82 E-value=2.5 Score=36.17 Aligned_cols=74 Identities=24% Similarity=0.391 Sum_probs=58.0
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.|..||-=|.|.|. ++..+|++ ++++...|++++..+...+.+++.| +++.+.+|..+.. .-
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 57899998888874 55666765 8899999999998888888887765 7899999997754 23
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
+..|+++.+..+
T Consensus 113 G~V~ILVNNAGI 124 (300)
T KOG1201|consen 113 GDVDILVNNAGI 124 (300)
T ss_pred CCceEEEecccc
Confidence 578888877644
|
|
| >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.79 Score=39.07 Aligned_cols=48 Identities=13% Similarity=0.308 Sum_probs=39.8
Q ss_pred cCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH
Q 024096 30 ARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVR 78 (272)
Q Consensus 30 l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~ 78 (272)
+.+..|.+|.-+|+|..+...++++. .++|++||+++..+...+-++.
T Consensus 59 m~~g~ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 59 MQLGIGHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred HhcCCCcEEEEecCCcchHHHHhhcC-CceeEEEeCCHHHHHHHHHHHH
Confidence 44568899999999998888888876 6799999999999887766554
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=90.73 E-value=1.7 Score=37.84 Aligned_cols=97 Identities=16% Similarity=0.235 Sum_probs=61.0
Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----CCCCCc
Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL----PKANKY 102 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~~~~~f 102 (272)
..+.+.++.+||=.|+| .|..+..+++..+.+++.++.+++..+.+++. |.. .++...-.+. .....+
T Consensus 157 ~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~----g~~---~~i~~~~~~~~~~~~~~~~~ 229 (333)
T cd08296 157 RNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKL----GAH---HYIDTSKEDVAEALQELGGA 229 (333)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc----CCc---EEecCCCccHHHHHHhcCCC
Confidence 44577788999999975 45566666776788999999988777766442 321 2221111111 111357
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
|+|+.. .+. ...+....+.|+++|+++..
T Consensus 230 d~vi~~-----~g~---~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 230 KLILAT-----APN---AKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred CEEEEC-----CCc---hHHHHHHHHHcccCCEEEEE
Confidence 888752 111 34666778889999998863
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.63 E-value=0.39 Score=43.64 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=75.2
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC--------CCCCCccE
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL--------PKANKYDR 104 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~--------~~~~~fD~ 104 (272)
.+.++|-+|-|.|.+...+... +..++++++++|.+.+.+..+..-..- .+..+...|..+. +.+..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 4567888888889999888777 778999999999999999987632211 1334444443221 13468999
Q ss_pred EEEech---hhcc---Chh-hHHHHHHHHHhcCccCcEEEEEeecCCCC
Q 024096 105 IISCGM---IEHV---GHD-YMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272)
Q Consensus 105 V~~~~~---~~~~---~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272)
++..-- .+.+ +.. --..++..+...|.|.|.+++.-.+....
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~ 422 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSS 422 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcc
Confidence 886410 1111 111 12467888899999999999876664443
|
|
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.88 Score=40.21 Aligned_cols=98 Identities=22% Similarity=0.262 Sum_probs=62.0
Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC-------CCC
Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR-------QLP 97 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~-------~~~ 97 (272)
.....+.++.+||-.|+| .|..+..+++..+.+ +++++.++...+.+++. |. .+++..+-. ...
T Consensus 175 ~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~----g~---~~vv~~~~~~~~~~l~~~~ 247 (363)
T cd08279 175 VNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRF----GA---THTVNASEDDAVEAVRDLT 247 (363)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHh----CC---eEEeCCCCccHHHHHHHHc
Confidence 344566788899999876 566777777777775 99999888877666432 32 122221111 111
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+..- +. ...+..+.+.|+++|+++..
T Consensus 248 ~~~~vd~vld~~-----~~---~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 248 DGRGADYAFEAV-----GR---AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred CCCCCCEEEEcC-----CC---hHHHHHHHHHhhcCCeEEEE
Confidence 235689887532 11 24567778889999998764
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.37 E-value=11 Score=32.58 Aligned_cols=165 Identities=16% Similarity=0.227 Sum_probs=92.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc---CCEEEEEcCCHHHHHHHHHHHHHcCC-----------------
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT---GCKYTGITLSEEQLKYAEIKVREAGL----------------- 82 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~---~~~v~gvd~s~~~~~~a~~~~~~~g~----------------- 82 (272)
+...+++ ......|+.+|||.=.+...|.... ...++=+|.++.....+... ....+
T Consensus 78 v~~Fl~~--~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik-~~~~~s~~l~~~~~eD~~~~s~ 154 (335)
T KOG2918|consen 78 VRAFLEQ--TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIK-RKPELSSILLGLHDEDVVDLSG 154 (335)
T ss_pred HHHHHHh--cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhc-ccCchhhhhhccccccccccCc
Confidence 3444444 3455799999999999888887762 35677777766555444111 11000
Q ss_pred ----CCCeEEEEcccCCCC-----------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCc
Q 024096 83 ----QDHIRFYLCDYRQLP-----------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQC 147 (272)
Q Consensus 83 ----~~~i~~~~~d~~~~~-----------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 147 (272)
.++-..+-+|+.++. ..+-.-++++--++.++.++.-..+++.+.........+ +-+...+.++
T Consensus 155 ~~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv-~YEQi~~~D~ 233 (335)
T KOG2918|consen 155 TDLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFV-NYEQINPNDR 233 (335)
T ss_pred ceeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEE-EEeccCCCCh
Confidence 123445555555432 012234556666777887776677888887766555444 4444445554
Q ss_pred cccccCcchhhhhcccC--C-CCCCCHHHHHHHhhcCCCcEEEEEEecCc
Q 024096 148 YDEYRLSPGFIKEYIFP--G-GCLPSLGRVTSAMTSSSGLCVEHLENIGI 194 (272)
Q Consensus 148 ~~~~~~~~~~~~~~~~p--~-~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~ 194 (272)
+.... ...++..-.| + ..+++.+...+++. ++||.-+.+.|+-.
T Consensus 234 Fg~vM--~~nlk~r~~~L~gle~y~s~Esq~~Rf~-~~Gw~~v~a~Dm~e 280 (335)
T KOG2918|consen 234 FGKVM--LANLKRRGCPLHGLETYNSIESQRSRFL-KAGWEYVIAVDMNE 280 (335)
T ss_pred HHHHH--HHHHHhcCCCCchhhhcccHHHHHHHHH-hcCCceeehhhHHH
Confidence 43321 1111111111 1 23467777776666 49998887777643
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.83 Score=39.79 Aligned_cols=68 Identities=13% Similarity=0.199 Sum_probs=49.3
Q ss_pred EEEECCCchHHHHHHHHccCCEE-EEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEechhhc
Q 024096 38 VLDIGCGWGTLAIEIVKQTGCKY-TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGMIEH 113 (272)
Q Consensus 38 vLDiG~G~G~~~~~l~~~~~~~v-~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~~~~ 113 (272)
|+|+-||.|+++.-+.+. |.++ .++|+++..++.-+.+. ++ .+..+|+.++. .-..+|+++.......
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~-----~~--~~~~~Di~~~~~~~~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANF-----GN--KVPFGDITKISPSDIPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhC-----CC--CCCccChhhhhhhhCCCcCEEEecCCCcc
Confidence 689999999999888775 5654 57999998888777664 22 44567887766 2246899988754433
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=1.7 Score=41.04 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=55.7
Q ss_pred CEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEE
Q 024096 36 QEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIIS 107 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~ 107 (272)
.+++=+|||. .+..+++. .+.+++.+|.+++.++.+++. ....+.+|..+.. .-+++|.+++
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 5677777764 33334433 467899999999988877642 4789999998754 2368887765
Q ss_pred echhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 108 CGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
. .++++....+-.+.+.+.|+-.++.
T Consensus 488 ~-----~~~~~~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 488 T-----IPNGYEAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred E-----cCChHHHHHHHHHHHHHCCCCeEEE
Confidence 3 2222222233334455577777765
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.06 E-value=3 Score=36.89 Aligned_cols=94 Identities=27% Similarity=0.328 Sum_probs=55.9
Q ss_pred CCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-cccCCCC-CCCCccEEEEe
Q 024096 32 VSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL-CDYRQLP-KANKYDRIISC 108 (272)
Q Consensus 32 ~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~-~d~~~~~-~~~~fD~V~~~ 108 (272)
..++.+||-.|+| .|..+..+++..++++++++.++.....+ .+..|.. .++. .+...+. ..+.+|+|+-.
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~---~~~~Ga~---~vi~~~~~~~~~~~~~~~D~vid~ 254 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEA---INRLGAD---SFLVSTDPEKMKAAIGTMDYIIDT 254 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhH---HHhCCCc---EEEcCCCHHHHHhhcCCCCEEEEC
Confidence 4678899999987 56667777777788898888776543222 1223431 1221 1111111 11247888743
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+. ...+.+..+.|+++|+++..
T Consensus 255 -----~g~---~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 255 -----VSA---VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred -----CCC---HHHHHHHHHHhcCCcEEEEe
Confidence 221 23566778899999999864
|
|
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=89.87 E-value=4.1 Score=35.53 Aligned_cols=99 Identities=23% Similarity=0.316 Sum_probs=59.6
Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc----CCCCCCCC
Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY----RQLPKANK 101 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~----~~~~~~~~ 101 (272)
....+.++.+||=.|+| .|..+..+++..+ .++++++.++...+.+++. |...-+.....+. .+......
T Consensus 160 ~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~i~~~~~~~~ 235 (345)
T cd08286 160 LNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL----GATHTVNSAKGDAIEQVLELTDGRG 235 (345)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCceeccccccHHHHHHHHhCCCC
Confidence 34456788888888775 3445566666667 7899999888776666542 4311112211121 11123356
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+|+|+.. .+. ...+..+.+.|+++|+++.
T Consensus 236 ~d~vld~-----~g~---~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 236 VDVVIEA-----VGI---PATFELCQELVAPGGHIAN 264 (345)
T ss_pred CCEEEEC-----CCC---HHHHHHHHHhccCCcEEEE
Confidence 9988853 221 2356777789999999875
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=89.85 E-value=3.9 Score=36.90 Aligned_cols=100 Identities=19% Similarity=0.293 Sum_probs=61.2
Q ss_pred HcCCCCCCEEEEEC-CC-chHHHHHHHHccC---CEEEEEcCCHHHHHHHHHHHHHc----CCCCCeEEEEc----ccC-
Q 024096 29 KARVSKGQEVLDIG-CG-WGTLAIEIVKQTG---CKYTGITLSEEQLKYAEIKVREA----GLQDHIRFYLC----DYR- 94 (272)
Q Consensus 29 ~l~~~~~~~vLDiG-~G-~G~~~~~l~~~~~---~~v~gvd~s~~~~~~a~~~~~~~----g~~~~i~~~~~----d~~- 94 (272)
...++++.+||=+| +| .|..+..+++..+ .+|+++|.++..++.+++..... |. ...++.. ++.
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~ 247 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHA 247 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHH
Confidence 34567889999997 44 6777787887643 27999999999888887742110 11 1112211 111
Q ss_pred ---CCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 95 ---QLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 95 ---~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
++.....+|+|+..- +. ...+....+.++++|.+++
T Consensus 248 ~v~~~t~g~g~D~vid~~-----g~---~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 248 TLMELTGGQGFDDVFVFV-----PV---PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred HHHHHhCCCCCCEEEEcC-----CC---HHHHHHHHHHhccCCeEEE
Confidence 111234689887531 11 3466677788898887765
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=89.70 E-value=5.4 Score=35.66 Aligned_cols=112 Identities=16% Similarity=0.289 Sum_probs=67.8
Q ss_pred HHHHHHcCCCCCCEEEEECCCchH----HHHHHHHc----cCCEEEEEcC----CHHHHHHHHHHH----HHcCCCCCeE
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGT----LAIEIVKQ----TGCKYTGITL----SEEQLKYAEIKV----REAGLQDHIR 87 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~----~~~~l~~~----~~~~v~gvd~----s~~~~~~a~~~~----~~~g~~~~i~ 87 (272)
..|++.+.-...-+|+|+|.|.|. +...|+.+ +..++|+++. +...++.+.+++ +..|++ .+
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--fe 177 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--FE 177 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--EE
Confidence 355666666677899999999885 55666665 2358999999 666666665554 444664 44
Q ss_pred EEE---cccCCCC------CCCCccEEEEechhhccChh------hHHHHHHHHHhcCccCcEEEE
Q 024096 88 FYL---CDYRQLP------KANKYDRIISCGMIEHVGHD------YMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 88 ~~~---~d~~~~~------~~~~fD~V~~~~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i 138 (272)
|.. .+.+++. .++..=+|-+...++|+.++ ....+++.+. .|+|.-.+++
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P~vvv~~ 242 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNPKVVVLV 242 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCCCEEEEE
Confidence 444 2344442 12222233445566887522 2345666555 6799955544
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=89.67 E-value=1.5 Score=35.08 Aligned_cols=106 Identities=13% Similarity=0.129 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC
Q 024096 16 EVGQMRKVSVLIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR 94 (272)
Q Consensus 16 ~~aq~~~~~~l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~ 94 (272)
.+....+.+.+........+.+||-+|+- +|.....+.++ .++|+.+|+.|.+... +++++.|... .
T Consensus 26 ~eI~~~K~~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~---------lp~~v~Fr~~--~ 93 (254)
T COG4017 26 NEIAKKKYQAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGF---------LPNNVKFRNL--L 93 (254)
T ss_pred HHHHHHHHHHhhhhhcccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhc---------CCCCccHhhh--c
Confidence 45555556666655666778899999987 77777777665 7899999999965443 3456776655 1
Q ss_pred CCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 95 QLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 95 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
.+..+.+|+|+-...+-.+. +.++++ +.|+ .+++.++..
T Consensus 94 -~~~~G~~DlivDlTGlGG~~----Pe~L~~----fnp~-vfiVEdP~g 132 (254)
T COG4017 94 -KFIRGEVDLIVDLTGLGGIE----PEFLAK----FNPK-VFIVEDPKG 132 (254)
T ss_pred -CCCCCceeEEEeccccCCCC----HHHHhc----cCCc-eEEEECCCC
Confidence 12457899999887777773 334332 3554 566655543
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=89.50 E-value=1.9 Score=39.75 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHHHcCC---CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 024096 14 DLEVGQMRKVSVLIEKARV---SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90 (272)
Q Consensus 14 ~l~~aq~~~~~~l~~~l~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~ 90 (272)
.+..+....+..++..-+. ....+++|+-||.|++..-+-+.....|.++|+++...+.-+.+... .+......
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~---~p~~~~~~ 140 (467)
T PRK10458 64 RLSEAEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC---DPATHRFN 140 (467)
T ss_pred CccHHHHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC---CCccceec
Confidence 4555555555555433221 12469999999999999988776334567999998776666555311 11334556
Q ss_pred cccCCCC
Q 024096 91 CDYRQLP 97 (272)
Q Consensus 91 ~d~~~~~ 97 (272)
+|+.++.
T Consensus 141 ~DI~~i~ 147 (467)
T PRK10458 141 EDIRDIT 147 (467)
T ss_pred cChhhCc
Confidence 6666653
|
|
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=89.44 E-value=6.4 Score=35.08 Aligned_cols=99 Identities=22% Similarity=0.211 Sum_probs=58.9
Q ss_pred cCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc---c----cCCCCCCC
Q 024096 30 ARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC---D----YRQLPKAN 100 (272)
Q Consensus 30 l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~---d----~~~~~~~~ 100 (272)
..+.++.+||=.|+| .|..+..+++..|. ++++++.++...+.+++ .|...-+..... + +.+.....
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~~g~ 274 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVTKGW 274 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhcCCC
Confidence 367788999988876 34455666666677 79999988875555444 243211111110 1 11112335
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+|+|+.. .+.. ...+..+.+.|+++|+++..
T Consensus 275 gvDvvld~-----~g~~--~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 275 GADIQVEA-----AGAP--PATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCEEEEC-----CCCc--HHHHHHHHHHHHcCCEEEEE
Confidence 68988853 2111 34566777888999999863
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.44 E-value=6.8 Score=34.56 Aligned_cols=95 Identities=25% Similarity=0.241 Sum_probs=56.2
Q ss_pred CCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEec
Q 024096 32 VSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCG 109 (272)
Q Consensus 32 ~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~ 109 (272)
..++.+||-.|+| .|..+..+++..+.++++++.+++....+.+ ..|.. . .+...+...+. ....+|+|+-.
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~---~~Ga~-~-~i~~~~~~~~~~~~~~~D~vid~- 251 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALE---HLGAD-D-YLVSSDAAEMQEAADSLDYIIDT- 251 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH---hcCCc-E-EecCCChHHHHHhcCCCcEEEEC-
Confidence 3578899988876 5566677777778888888887765544432 23431 1 11111111111 11357877743
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+. ...++.+.+.|+++|+++..
T Consensus 252 ----~g~---~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 252 ----VPV---FHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred ----CCc---hHHHHHHHHHhccCCEEEEE
Confidence 221 24566677889999998874
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.28 E-value=2.1 Score=38.87 Aligned_cols=111 Identities=20% Similarity=0.210 Sum_probs=69.7
Q ss_pred CCCCEEEEECCCchHHHHHHH--Hc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-cc--CCCC--CCCCccE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIV--KQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-DY--RQLP--KANKYDR 104 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~--~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d~--~~~~--~~~~fD~ 104 (272)
...+.++|+|+|.|.-...+. .. ..-.++.||.+..+.......++. |-..+-.++.. -+ ..+| ..+.||+
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHIGEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhcCchhccccchhcccCCCCcccceee
Confidence 345788999988775443333 33 346799999999999998888765 11111111111 11 1123 4467999
Q ss_pred EEEechhhccChhhH-HHH-HHHHHhcCccCcEEEEEeecCC
Q 024096 105 IISCGMIEHVGHDYM-EEF-FGCCESLLATHGLLVLQFISAP 144 (272)
Q Consensus 105 V~~~~~~~~~~~~~~-~~~-l~~~~~~LkpgG~l~i~~~~~~ 144 (272)
|++...+++++.... ... ...+....++|+.+++.....+
T Consensus 278 vi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 278 VICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999999875532 223 3345577788888888655443
|
|
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.26 E-value=1.5 Score=38.30 Aligned_cols=96 Identities=21% Similarity=0.248 Sum_probs=57.6
Q ss_pred CCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc---CCCCCCCCccEEE
Q 024096 32 VSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY---RQLPKANKYDRII 106 (272)
Q Consensus 32 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~---~~~~~~~~fD~V~ 106 (272)
..++.+||-.|+|. |..+..+++..+. ++++++-++...+.+++. |...-+.....++ .+....+.+|+|+
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~vd~vl 236 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM----GADVVINPREEDVVEVKSVTDGTGVDVVL 236 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CcceeeCcccccHHHHHHHcCCCCCCEEE
Confidence 45788888888763 6677777777777 788887777666655542 3211111111111 1122335789998
Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..- +. ......+.+.|+++|+++..
T Consensus 237 d~~-----g~---~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 237 EMS-----GN---PKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred ECC-----CC---HHHHHHHHHHhccCCEEEEE
Confidence 632 11 24566677889999998753
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.13 E-value=1 Score=39.88 Aligned_cols=97 Identities=20% Similarity=0.274 Sum_probs=61.5
Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----C--CC
Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL----P--KA 99 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~--~~ 99 (272)
+...+.++.+||-.|+| .|..+..+++..|. ++++++.++...+.+++. |. ..++..+-.+. . ..
T Consensus 180 ~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~---~~~i~~~~~~~~~~v~~~~~ 252 (365)
T cd08278 180 NVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GA---THVINPKEEDLVAAIREITG 252 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CC---cEEecCCCcCHHHHHHHHhC
Confidence 34556788999999876 36677777777677 699999998777666542 32 12222111111 0 13
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+|+|+-. .+. ...+..+.+.|+++|+++..
T Consensus 253 ~~~d~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 253 GGVDYALDT-----TGV---PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred CCCcEEEEC-----CCC---cHHHHHHHHHhccCCEEEEe
Confidence 468988853 221 24567778889999998863
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.12 E-value=4.2 Score=36.78 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=74.5
Q ss_pred CCCEEEEEC---CC----chHHHHHHHHc-cCCEEEEEcCC-HHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------
Q 024096 34 KGQEVLDIG---CG----WGTLAIEIVKQ-TGCKYTGITLS-EEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------- 97 (272)
Q Consensus 34 ~~~~vLDiG---~G----~G~~~~~l~~~-~~~~v~gvd~s-~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------- 97 (272)
++..||=+| +| .|=++.++.++ ...-+++.|+- |..++..+....+.+ +.|+..+-..-|
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~----v~~f~~~~~~~Pv~Iak~a 174 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVG----VPFFGSGTEKDPVEIAKAA 174 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcC----CceecCCCCCCHHHHHHHH
Confidence 456677774 55 33355555554 23346777874 777788888777764 455555433333
Q ss_pred ----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCC
Q 024096 98 ----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272)
Q Consensus 98 ----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272)
..+.+|+|+...+-.|--++++-.-++++.+.++|.-.+++.|-....+
T Consensus 175 l~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd 227 (451)
T COG0541 175 LEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD 227 (451)
T ss_pred HHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH
Confidence 2467999999877766666777788899999999999999987765543
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=88.93 E-value=1.2 Score=39.71 Aligned_cols=98 Identities=16% Similarity=0.200 Sum_probs=54.0
Q ss_pred CCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh
Q 024096 34 KGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272)
Q Consensus 34 ~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272)
++.+|+=+|+| .|..+...+...|++|+.+|.++...+.+.... + ..+.....+..++. .-..+|+|+..-.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 45679999998 555556666657889999999887655543322 1 11221111111122 12468999975322
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.-. +.+.-+-++..+.++|++.++-
T Consensus 241 ~g~--~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 241 PGA--KAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred CCC--CCCcCcCHHHHhcCCCCCEEEE
Confidence 111 1111123445566899987664
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.93 E-value=4.7 Score=35.33 Aligned_cols=106 Identities=21% Similarity=0.219 Sum_probs=67.7
Q ss_pred HHHHHcCCCCCCEEEEECCCc-hHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc----cCCCC-
Q 024096 25 VLIEKARVSKGQEVLDIGCGW-GTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD----YRQLP- 97 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d----~~~~~- 97 (272)
..++..+.++|++|.-+|||. |..++.-+.. ...+++++|+++.-.++|++. | -.+++... +.+.-
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f----G---AT~~vn~~~~~~vv~~i~ 248 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF----G---ATHFVNPKEVDDVVEAIV 248 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc----C---CceeecchhhhhHHHHHH
Confidence 456677889999999999984 5555555555 345899999999999999876 3 34454442 11111
Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
.+...|.++ +..+. ...++.....+.++|..++.-...+.
T Consensus 249 ~~T~gG~d~~~-----e~~G~---~~~~~~al~~~~~~G~~v~iGv~~~~ 290 (366)
T COG1062 249 ELTDGGADYAF-----ECVGN---VEVMRQALEATHRGGTSVIIGVAGAG 290 (366)
T ss_pred HhcCCCCCEEE-----EccCC---HHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 223566653 22322 23666666667779998886554433
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=88.82 E-value=4.4 Score=34.97 Aligned_cols=94 Identities=20% Similarity=0.213 Sum_probs=54.5
Q ss_pred HHHHcCCC-CCCEEEEECCCchH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCc
Q 024096 26 LIEKARVS-KGQEVLDIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKY 102 (272)
Q Consensus 26 l~~~l~~~-~~~~vLDiG~G~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~f 102 (272)
.++..... .+.+|+=+|.|.-+ .....++..+++|+.+|.++...+.++. .|. ++. +..++. .-..+
T Consensus 142 a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~G~----~~~--~~~~l~~~l~~a 211 (296)
T PRK08306 142 AIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE----MGL----SPF--HLSELAEEVGKI 211 (296)
T ss_pred HHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCC----eee--cHHHHHHHhCCC
Confidence 34444433 57899999998533 3333333468899999999876555432 232 222 122222 12568
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
|+|+..- |. .-+-++....++|++.++
T Consensus 212 DiVI~t~-----p~---~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 212 DIIFNTI-----PA---LVLTKEVLSKMPPEALII 238 (296)
T ss_pred CEEEECC-----Ch---hhhhHHHHHcCCCCcEEE
Confidence 9999852 21 123345567788987665
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=88.63 E-value=0.38 Score=39.80 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=35.8
Q ss_pred EEEEcccCCCC---CCCCccEEEEechhhc-----cC--------hhhHHHHHHHHHhcCccCcEEEE
Q 024096 87 RFYLCDYRQLP---KANKYDRIISCGMIEH-----VG--------HDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 87 ~~~~~d~~~~~---~~~~fD~V~~~~~~~~-----~~--------~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+++++|..+.- +++++|+|+......- .+ .+-....+++++|+|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 56778876542 6788999998854420 00 01235788999999999998875
|
|
| >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Probab=88.59 E-value=1.4 Score=38.37 Aligned_cols=97 Identities=25% Similarity=0.294 Sum_probs=61.8
Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC-------CCCC
Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR-------QLPK 98 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~-------~~~~ 98 (272)
..+.+.++.+||=.|+| .|..+..+++..+.+ +++++.++...+.+.+ .+. ..++..+-. ....
T Consensus 159 ~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~----~g~---~~~~~~~~~~~~~~i~~~~~ 231 (343)
T cd08235 159 RKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK----LGA---DYTIDAAEEDLVEKVRELTD 231 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCC---cEEecCCccCHHHHHHHHhC
Confidence 44567889999999876 666767777777777 8899888887776643 232 122221111 1123
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
...+|+|+.. .+. ...+..+.+.|+++|+++..
T Consensus 232 ~~~vd~vld~-----~~~---~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 232 GRGADVVIVA-----TGS---PEAQAQALELVRKGGRILFF 264 (343)
T ss_pred CcCCCEEEEC-----CCC---hHHHHHHHHHhhcCCEEEEE
Confidence 3458998853 211 24566677888999998863
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i |
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=88.55 E-value=3.4 Score=36.52 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=60.6
Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc--cc----CCCCC
Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC--DY----RQLPK 98 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~--d~----~~~~~ 98 (272)
.+...+.++.+||=.|+| .|..+..+++..+. .+++++.++...+.+++. |...-+..... +. .+..
T Consensus 176 ~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~~~l~~~~- 250 (365)
T cd05279 176 VNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL----GATECINPRDQDKPIVEVLTEMT- 250 (365)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCCeecccccccchHHHHHHHHh-
Confidence 344567788999999876 44555666776666 488888888877777542 33111111111 11 1111
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCc-cCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLA-THGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~ 139 (272)
.+.+|+|+.. .+. ...+....+.|+ ++|+++..
T Consensus 251 ~~~~d~vid~-----~g~---~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 251 DGGVDYAFEV-----IGS---ADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred CCCCcEEEEC-----CCC---HHHHHHHHHHhccCCCEEEEE
Confidence 2468988853 221 245667778888 99998864
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=88.28 E-value=3.5 Score=35.14 Aligned_cols=84 Identities=17% Similarity=0.166 Sum_probs=51.4
Q ss_pred EEEEECCCc--hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhcc
Q 024096 37 EVLDIGCGW--GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHV 114 (272)
Q Consensus 37 ~vLDiG~G~--G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~ 114 (272)
+|.=||+|. |.++..+.+. +.+|+++|.++...+.+.+. |. +.....+.. .....|+|+..-
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~~---~~~~aDlVilav----- 65 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRESTCERAIER----GL---VDEASTDLS---LLKDCDLVILAL----- 65 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHC----CC---cccccCCHh---HhcCCCEEEEcC-----
Confidence 567788884 3455556554 77999999999877766543 21 111111111 124679998764
Q ss_pred ChhhHHHHHHHHHhcCccCcEE
Q 024096 115 GHDYMEEFFGCCESLLATHGLL 136 (272)
Q Consensus 115 ~~~~~~~~l~~~~~~LkpgG~l 136 (272)
+......+++++...++++..+
T Consensus 66 p~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 66 PIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred CHHHHHHHHHHHHHhCCCCcEE
Confidence 3334466788888888776433
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.28 E-value=12 Score=30.39 Aligned_cols=103 Identities=17% Similarity=0.079 Sum_probs=59.7
Q ss_pred CCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.+.+||-.|++. .++..+++. .|.+|++++-++...+...+.+... .+++++.+|+.+.. .-
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 357899999853 333333332 4889999999887665554444332 26788999987643 01
Q ss_pred CCccEEEEechhhcc-Chhh--------------HHHHHHHHHhcCccCcEEEEEe
Q 024096 100 NKYDRIISCGMIEHV-GHDY--------------MEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~-~~~~--------------~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+..|.++........ +..+ .-.+++.+...++++|.+++..
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 346877765432111 0011 1123455556667788777643
|
|
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=88.18 E-value=2.8 Score=35.67 Aligned_cols=98 Identities=29% Similarity=0.397 Sum_probs=59.2
Q ss_pred HcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc----CCCCCCCCc
Q 024096 29 KARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY----RQLPKANKY 102 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~----~~~~~~~~f 102 (272)
...+.++.+||-.|| +.|..+..+++..++++++++.++...+.+++ .+...-+.....+. ........+
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~~~~~~ 209 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARA----LGADHVIDYRDPDLRERVKALTGGRGV 209 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHHHHHHHcCCCCc
Confidence 445678899999998 35666667777778899999998877766643 23211111111111 111123468
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
|+++.. .+ ...+..+.+.++++|.++..
T Consensus 210 d~v~~~-----~g----~~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 210 DVVYDP-----VG----GDVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred EEEEEC-----cc----HHHHHHHHHhhccCCEEEEE
Confidence 888753 21 12345566788999998763
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.86 E-value=13 Score=31.06 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=58.3
Q ss_pred CCCEEEEECCCch-HHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------C
Q 024096 34 KGQEVLDIGCGWG-TLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------K 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G-~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~ 98 (272)
.+.++|-.|+++| +++..++++ .+++|+.++.++...+...+.....+ .+.++.+|+.+.. .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHH
Confidence 4678999997652 444444333 47888888887644333333332222 3457788876643 1
Q ss_pred CCCccEEEEechhhc----------cChhhHHH-----------HHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEH----------VGHDYMEE-----------FFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~----------~~~~~~~~-----------~l~~~~~~LkpgG~l~i~ 139 (272)
-++.|+++.+..+.. .+.+++.. +.+.+...|+.+|.++..
T Consensus 86 ~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~i 147 (258)
T PRK07533 86 WGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTM 147 (258)
T ss_pred cCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEE
Confidence 256899888754321 12222222 234556666777887653
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=87.60 E-value=11 Score=29.40 Aligned_cols=93 Identities=12% Similarity=0.148 Sum_probs=61.2
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEe
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIISC 108 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~~ 108 (272)
++.+|+-|||=+-.....-...++.++..+|++...... + ++ +|+.-|..+.. ..++||+|++.
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~--------~--~~-~F~fyD~~~p~~~~~~l~~~~d~vv~D 93 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF--------G--GD-EFVFYDYNEPEELPEELKGKFDVVVID 93 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc--------C--Cc-ceEECCCCChhhhhhhcCCCceEEEEC
Confidence 567999999977554443311267789999998743221 1 23 46666665533 23799999999
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+ +..+-.......+.-++|+++.+++.
T Consensus 94 PPF--l~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 94 PPF--LSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred CCC--CCHHHHHHHHHHHHHHhCccceEEEe
Confidence 988 44344445666677777898998874
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=87.53 E-value=2.9 Score=36.01 Aligned_cols=98 Identities=27% Similarity=0.296 Sum_probs=59.5
Q ss_pred HHHcCCCCCCEEEEECCC--chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc--c----CCCCC
Q 024096 27 IEKARVSKGQEVLDIGCG--WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD--Y----RQLPK 98 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d--~----~~~~~ 98 (272)
.+...+.++.+||-.|.+ .|.....++...+.+++.++.++...+.++. .+. ...+-..+ . .....
T Consensus 159 ~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~ 232 (342)
T cd08266 159 VTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE----LGA--DYVIDYRKEDFVREVRELTG 232 (342)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC--CeEEecCChHHHHHHHHHhC
Confidence 344567788899988875 5666666776678899999988877666533 232 11111111 0 00112
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
...+|+++.... . ..+..+.+.|+++|.++..
T Consensus 233 ~~~~d~~i~~~g-----~----~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 233 KRGVDVVVEHVG-----A----ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred CCCCcEEEECCc-----H----HHHHHHHHHhhcCCEEEEE
Confidence 346888886432 1 2345566788999998764
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.35 E-value=3.4 Score=37.03 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=50.2
Q ss_pred CEEEEECCC-chHHH-HHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEEEec
Q 024096 36 QEVLDIGCG-WGTLA-IEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRIISCG 109 (272)
Q Consensus 36 ~~vLDiG~G-~G~~~-~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V~~~~ 109 (272)
++||=|||| .|... ..|++....+|+..|-|++..+.+..... .+++..+.|+.+.+ .-..+|+|++..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 579999996 33332 33344444799999999888777765532 37899999998876 225669999875
Q ss_pred hhh
Q 024096 110 MIE 112 (272)
Q Consensus 110 ~~~ 112 (272)
.-.
T Consensus 77 p~~ 79 (389)
T COG1748 77 PPF 79 (389)
T ss_pred Cch
Confidence 433
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=87.32 E-value=1.8 Score=36.46 Aligned_cols=74 Identities=16% Similarity=0.177 Sum_probs=44.0
Q ss_pred HHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhccChhhHHHHHHHHH
Q 024096 49 AIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCE 127 (272)
Q Consensus 49 ~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~ 127 (272)
+..|.+. +..+|+|+|.++...+.+.+. |..+ -...+.+.+ ..+|+|+..-.+.. ...+++++.
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~~~---~~~~~~~~~---~~~DlvvlavP~~~-----~~~~l~~~~ 66 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL----GIID---EASTDIEAV---EDADLVVLAVPVSA-----IEDVLEEIA 66 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TSSS---EEESHHHHG---GCCSEEEE-S-HHH-----HHHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CCee---eccCCHhHh---cCCCEEEEcCCHHH-----HHHHHHHhh
Confidence 4556665 468999999999988877654 4321 122211222 45699998654443 467788887
Q ss_pred hcCccCcEEE
Q 024096 128 SLLATHGLLV 137 (272)
Q Consensus 128 ~~LkpgG~l~ 137 (272)
..+++|..+.
T Consensus 67 ~~~~~~~iv~ 76 (258)
T PF02153_consen 67 PYLKPGAIVT 76 (258)
T ss_dssp CGS-TTSEEE
T ss_pred hhcCCCcEEE
Confidence 7777775543
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=87.16 E-value=1.5 Score=37.48 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=61.5
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 61 ~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
.-..+.+...+.++.+++ ++.++++|+.++- +.+..|.++...+=.++++.....+..++.+-+.+|.+++
T Consensus 290 lP~yl~~~~YEsir~n~~------RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~Vi 363 (414)
T COG5379 290 LPAYLDEGVYESIRQNLR------RVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVI 363 (414)
T ss_pred CChhhchhhHHHHHhhhh------heeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEE
Confidence 445566777777777763 6899999987765 5689999999999999999889999999999999999999
Q ss_pred EE
Q 024096 138 LQ 139 (272)
Q Consensus 138 i~ 139 (272)
+-
T Consensus 364 fR 365 (414)
T COG5379 364 FR 365 (414)
T ss_pred Ee
Confidence 84
|
|
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=87.01 E-value=3.9 Score=35.51 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=58.3
Q ss_pred HHHHcCCCCCCEEEEECCC-chHHHHHHHHc-cCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CC-CCC
Q 024096 26 LIEKARVSKGQEVLDIGCG-WGTLAIEIVKQ-TGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-LP-KAN 100 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-~~-~~~ 100 (272)
+.....+.++.+||=.|+| .|..+..+++. .++ .+++++.+++..+.+++. |...-+.....++.+ +. ...
T Consensus 152 ~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~g~ 227 (339)
T PRK10083 152 VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----GADWVINNAQEPLGEALEEKGI 227 (339)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHhcCCC
Confidence 3445567889999999976 34455566664 476 488899888777776543 331111111111111 11 112
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+|+|+.. .+. ...+....+.|+++|+++..
T Consensus 228 ~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 228 KPTLIIDA-----ACH---PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CCCEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEE
Confidence 34566542 211 24567778889999999863
|
|
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=86.99 E-value=1.7 Score=37.98 Aligned_cols=96 Identities=21% Similarity=0.235 Sum_probs=57.5
Q ss_pred CCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc----CCCCCCCCccEE
Q 024096 32 VSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY----RQLPKANKYDRI 105 (272)
Q Consensus 32 ~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~----~~~~~~~~fD~V 105 (272)
..++.+||-.|+| .|..+..+++..+.+ +++++.++...+.+++. |...-+.....++ .+......+|+|
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~l~~~~~~~~~d~v 234 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GATYVVNPFKEDVVKEVADLTDGEGVDVF 234 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCcEEEcccccCHHHHHHHhcCCCCCCEE
Confidence 4577888887775 456667777777776 88888777666655543 3210011111111 111233568999
Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+... +. ...+..+.+.|+++|+++..
T Consensus 235 ld~~-----g~---~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 235 LEMS-----GA---PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred EECC-----CC---HHHHHHHHHhhcCCCEEEEE
Confidence 8641 11 24567778889999998753
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=86.97 E-value=4.8 Score=35.08 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=60.4
Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc----ccCC----CCC
Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC----DYRQ----LPK 98 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~----d~~~----~~~ 98 (272)
+...+.++.+||=.|+| .|..+..+++..+.++++++.+++..+.+++ .|.. +++.. +..+ ...
T Consensus 159 ~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~~~~~~~~ 231 (345)
T cd08260 159 HQARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE----LGAV---ATVNASEVEDVAAAVRDLTG 231 (345)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH----hCCC---EEEccccchhHHHHHHHHhC
Confidence 34456788899999875 4556666777778899999988887777743 2431 22211 1111 112
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
. .+|+|+.. ++. ...+....+.|+++|.++.
T Consensus 232 ~-~~d~vi~~-----~g~---~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 232 G-GAHVSVDA-----LGI---PETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred C-CCCEEEEc-----CCC---HHHHHHHHHHhhcCCEEEE
Confidence 2 68988864 211 2356667888999999875
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=86.87 E-value=8 Score=33.63 Aligned_cols=97 Identities=28% Similarity=0.311 Sum_probs=58.8
Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-CCCCccE
Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P-KANKYDR 104 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~-~~~~fD~ 104 (272)
..+.+.++.+||=.|+| .|..+..+++..+.++++++.+++..+.+++. |.. .++...-.+. . ..+.+|+
T Consensus 163 ~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~d~ 235 (337)
T cd05283 163 KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKL----GAD---EFIATKDPEAMKKAAGSLDL 235 (337)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHc----CCc---EEecCcchhhhhhccCCceE
Confidence 44567788888888874 45555666666788999999988777766432 321 1111111111 1 2356888
Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
|+.. .+.+ ..+..+.+.|+++|+++..
T Consensus 236 v~~~-----~g~~---~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 236 IIDT-----VSAS---HDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred EEEC-----CCCc---chHHHHHHHhcCCCEEEEE
Confidence 8843 2211 2356667888999998864
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=86.77 E-value=8.9 Score=30.36 Aligned_cols=99 Identities=22% Similarity=0.285 Sum_probs=59.6
Q ss_pred EEEEECCCchH--HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------C-C--------CCCeEEEEcccCCCCC
Q 024096 37 EVLDIGCGWGT--LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA-------G-L--------QDHIRFYLCDYRQLPK 98 (272)
Q Consensus 37 ~vLDiG~G~G~--~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~-------g-~--------~~~i~~~~~d~~~~~~ 98 (272)
+|.=+|+|+=+ ++..++. .|.+|+.+|.+++.++.+++.+... + + ..++. ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHh-CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence 46678998644 4444555 4899999999999998888876541 1 1 11333 33444433
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
...|+|+=. +.+.+ +....+++++.+.+.|+-.|.-.+...
T Consensus 77 -~~adlViEa-i~E~l--~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 77 -VDADLVIEA-IPEDL--ELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp -CTESEEEE--S-SSH--HHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred -hhhheehhh-ccccH--HHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 256777643 23333 345789999999999998877654443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.77 E-value=3.5 Score=36.78 Aligned_cols=92 Identities=28% Similarity=0.320 Sum_probs=55.7
Q ss_pred CCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHH-HHHHHHHHHHcCCCCCeEEEEc-ccCCCC-CCCCccEEEEe
Q 024096 33 SKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQ-LKYAEIKVREAGLQDHIRFYLC-DYRQLP-KANKYDRIISC 108 (272)
Q Consensus 33 ~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~-~~~a~~~~~~~g~~~~i~~~~~-d~~~~~-~~~~fD~V~~~ 108 (272)
.++.+||-.|+| .|..+..+++..++++++++.+++. .+.++ ..|.. .++.. +...+. ....+|+|+-.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~----~lGa~---~~i~~~~~~~v~~~~~~~D~vid~ 249 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID----RLGAD---SFLVTTDSQKMKEAVGTMDFIIDT 249 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH----hCCCc---EEEcCcCHHHHHHhhCCCcEEEEC
Confidence 578999999886 5566677777778899999877543 33332 23431 12211 111111 11257888753
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+. ...+....+.++++|+++..
T Consensus 250 -----~G~---~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 250 -----VSA---EHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred -----CCc---HHHHHHHHHhhcCCCEEEEE
Confidence 221 23566777889999999864
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.57 E-value=2 Score=38.03 Aligned_cols=69 Identities=12% Similarity=0.076 Sum_probs=58.3
Q ss_pred HHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 024096 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272)
.-++..+|.+|+|+.|-.|.-+.+++.- ...++.++|.++...+..++.+...|.. .+....+|+...+
T Consensus 207 ~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t~ 277 (413)
T KOG2360|consen 207 HLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNTA 277 (413)
T ss_pred hhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCCC
Confidence 4456678899999999999999988876 3579999999999999999999988874 6677799988755
|
|
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=86.43 E-value=2.6 Score=37.20 Aligned_cols=94 Identities=22% Similarity=0.323 Sum_probs=58.7
Q ss_pred CCCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-------CCCCCC
Q 024096 31 RVSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-------LPKANK 101 (272)
Q Consensus 31 ~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-------~~~~~~ 101 (272)
.+.++.+||-.|+| .|..+..+++..+.+ +++++.++...+.+++. |. ..++..+-.. ......
T Consensus 184 ~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~----g~---~~v~~~~~~~~~~~l~~~~~~~~ 256 (367)
T cd08263 184 DVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL----GA---THTVNAAKEDAVAAIREITGGRG 256 (367)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CC---ceEecCCcccHHHHHHHHhCCCC
Confidence 34678888887765 555666677766776 99998888777766432 32 1222221111 113356
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|+|+.. ++.. ..+..+.+.|+++|+++..
T Consensus 257 ~d~vld~-----vg~~---~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 257 VDVVVEA-----LGKP---ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred CCEEEEe-----CCCH---HHHHHHHHHHhcCCEEEEE
Confidence 9999863 2211 3567778899999998763
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=86.26 E-value=4 Score=34.86 Aligned_cols=61 Identities=26% Similarity=0.339 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272)
Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272)
.-......++.. ...+++.|||.=+|+|.......+ .+...+|+|+++..++.+.+++...
T Consensus 207 ~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~-~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 207 KPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKN-LGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred ChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHH-cCCceEEEecCHHHHHHHHHHHHhh
Confidence 334445666666 567899999999999999887666 4889999999999999999998654
|
|
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=86.11 E-value=17 Score=30.79 Aligned_cols=96 Identities=19% Similarity=0.245 Sum_probs=60.9
Q ss_pred cCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CC-CCCCccEE
Q 024096 30 ARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-LP-KANKYDRI 105 (272)
Q Consensus 30 l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-~~-~~~~fD~V 105 (272)
..+.++.+||=.|+ +.|..+..+++..++++++++.+++..+.+++ .|.. .+-....+..+ +. ....+|+|
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~i~~~~~~~d~v 212 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE----LGAD-EVVIDDGAIAEQLRAAPGGFDKV 212 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc-EEEecCccHHHHHHHhCCCceEE
Confidence 34678899999885 57778888888888999999988877666643 2431 11111111100 00 13568888
Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+.. .+ ...+....+.|+++|+++..
T Consensus 213 l~~-----~~----~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 213 LEL-----VG----TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred EEC-----CC----hHHHHHHHHHhccCCEEEEE
Confidence 853 22 23566777889999998764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Probab=85.92 E-value=14 Score=32.01 Aligned_cols=95 Identities=21% Similarity=0.294 Sum_probs=57.5
Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-------CCC
Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-------LPK 98 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-------~~~ 98 (272)
......++.+||=.|+| .|..+..+++..+. ++++++.+++..+.+++ .|. ..+..+-.+ ...
T Consensus 161 ~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~----~~~~~~~~~~~~~l~~~~~ 232 (344)
T cd08284 161 KRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGA----EPINFEDAEPVERVREATE 232 (344)
T ss_pred HhcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCC----eEEecCCcCHHHHHHHHhC
Confidence 33556778899888765 34455666666775 89999887766655544 232 112111111 112
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
...+|+|+.. .+. ...+....+.|+++|+++.
T Consensus 233 ~~~~dvvid~-----~~~---~~~~~~~~~~l~~~g~~v~ 264 (344)
T cd08284 233 GRGADVVLEA-----VGG---AAALDLAFDLVRPGGVISS 264 (344)
T ss_pred CCCCCEEEEC-----CCC---HHHHHHHHHhcccCCEEEE
Confidence 3568988853 211 2456677888899999875
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=85.83 E-value=3.1 Score=35.89 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=69.3
Q ss_pred CEEEEECCCchHHHHHHHHcc---------------------CCEEEEEcCCH--HHHHHHHHHHHHc------------
Q 024096 36 QEVLDIGCGWGTLAIEIVKQT---------------------GCKYTGITLSE--EQLKYAEIKVREA------------ 80 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~~---------------------~~~v~gvd~s~--~~~~~a~~~~~~~------------ 80 (272)
.+||-||.|-|.=...++... ...++.+|+.+ ..++.....+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999986333322210 14899999975 4445554444333
Q ss_pred CC--C--CCeEEEEcccCCCCCC--------CCccEEEEechhhcc---ChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 81 GL--Q--DHIRFYLCDYRQLPKA--------NKYDRIISCGMIEHV---GHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 81 g~--~--~~i~~~~~d~~~~~~~--------~~fD~V~~~~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
.. + -++.|.+.|+..+..+ ...++|...+++.-+ ....-..++.++-..++||..++|.+...
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 01 1 1478999999887721 245777665554432 11334679999999999999999976553
|
|
| >cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=85.66 E-value=13 Score=31.43 Aligned_cols=94 Identities=20% Similarity=0.238 Sum_probs=59.9
Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE
Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRI 105 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V 105 (272)
..+...++.+||=.|+ +.|..+..+++..+.++++++.+++..+.+++ .|.. ..+. +..+.. +..+|++
T Consensus 126 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~--~~~~--~~~~~~-~~~~d~v 196 (305)
T cd08270 126 RRGGPLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE----LGAA--EVVV--GGSELS-GAPVDLV 196 (305)
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc--EEEe--cccccc-CCCceEE
Confidence 3444446889999987 46667777777778899999988877766654 2432 1111 111122 2468888
Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+.. ++. ..+....+.|+++|+++..
T Consensus 197 l~~-----~g~----~~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 197 VDS-----VGG----PQLARALELLAPGGTVVSV 221 (305)
T ss_pred EEC-----CCc----HHHHHHHHHhcCCCEEEEE
Confidence 853 221 2466778889999998863
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Probab=85.56 E-value=18 Score=32.09 Aligned_cols=107 Identities=23% Similarity=0.169 Sum_probs=62.6
Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc----CCCCCCCC
Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY----RQLPKANK 101 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~----~~~~~~~~ 101 (272)
....+.++.+||-.|+| .|..+..+++..+. ++++++.++...+.+++. |. ..+.....+. .++.. ..
T Consensus 170 ~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~----g~-~~v~~~~~~~~~~i~~~~~-~~ 243 (375)
T cd08282 170 ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESI----GA-IPIDFSDGDPVEQILGLEP-GG 243 (375)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CC-eEeccCcccHHHHHHHhhC-CC
Confidence 45567788999988887 46666777776675 798999888776666542 32 0010000110 11112 46
Q ss_pred ccEEEEechhh---ccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 102 YDRIISCGMIE---HVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 102 fD~V~~~~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+|+|+-.-.-. +....+....+.++.+.|+++|.+....
T Consensus 244 ~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g 285 (375)
T cd08282 244 VDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVG 285 (375)
T ss_pred CCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEe
Confidence 88887642211 0000012345778889999999996543
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.38 E-value=2.8 Score=36.68 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=54.6
Q ss_pred CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC---C-CccEEEEech
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA---N-KYDRIISCGM 110 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~---~-~fD~V~~~~~ 110 (272)
..+++|+-||.|++..-+.+..-.-+.++|+++..++.-+.+.. ...+...|+.+.... . .+|+++....
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~------~~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP------HGDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC------CCceeechHhhcChhhccccCCCEEEeCCC
Confidence 46899999999999987777622356799999988877776642 246777887766621 2 7899999876
Q ss_pred hhcc
Q 024096 111 IEHV 114 (272)
Q Consensus 111 ~~~~ 114 (272)
.+.+
T Consensus 77 CQ~F 80 (328)
T COG0270 77 CQDF 80 (328)
T ss_pred Ccch
Confidence 6555
|
|
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=85.25 E-value=15 Score=31.75 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=53.2
Q ss_pred CCCEEEEE--CCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-------CCCCCcc
Q 024096 34 KGQEVLDI--GCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-------PKANKYD 103 (272)
Q Consensus 34 ~~~~vLDi--G~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-------~~~~~fD 103 (272)
++.++|=+ |+| .|..+..+++..++++++++.++...+.+++ .|.. .++..+-.+. .....+|
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK----IGAE---YVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEECCCccHHHHHHHHhCCCCCc
Confidence 34444443 443 6667777887788899999999887777765 2421 2222221111 1224689
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|+-. .+.. ......+.|+++|+++..
T Consensus 215 ~vid~-----~g~~----~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 215 IFFDA-----VGGG----LTGQILLAMPYGSTLYVY 241 (324)
T ss_pred EEEEC-----CCcH----HHHHHHHhhCCCCEEEEE
Confidence 88853 2212 233456678999998864
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.14 E-value=13 Score=33.35 Aligned_cols=112 Identities=11% Similarity=0.113 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC-eEEEEccc
Q 024096 15 LEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH-IRFYLCDY 93 (272)
Q Consensus 15 l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~-i~~~~~d~ 93 (272)
++.|....++.+.+.. .. .+||-++=..|.++..++.. +.. ...| |--.....+.|++.++++.. +++... .
T Consensus 28 wdaade~ll~~~~~~~-~~--~~~~i~nd~fGal~~~l~~~-~~~-~~~d-s~~~~~~~~~n~~~n~~~~~~~~~~~~-~ 100 (378)
T PRK15001 28 WEAADEYLLQQLDDTE-IR--GPVLILNDAFGALSCALAEH-KPY-SIGD-SYISELATRENLRLNGIDESSVKFLDS-T 100 (378)
T ss_pred cccHHHHHHHHHhhcc-cC--CCEEEEcCchhHHHHHHHhC-CCC-eeeh-HHHHHHHHHHHHHHcCCCcccceeecc-c
Confidence 4455555556555532 11 28999999999999999965 222 1233 33344556778888887543 444422 1
Q ss_pred CCCCCCCCccEEEEechhhccCh--hhHHHHHHHHHhcCccCcEEEEEe
Q 024096 94 RQLPKANKYDRIISCGMIEHVGH--DYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 94 ~~~~~~~~fD~V~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
.++ ++.+|+|+.. +|. ......+..+...|.||+.+++..
T Consensus 101 ~~~--~~~~d~vl~~-----~PK~~~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 101 ADY--PQQPGVVLIK-----VPKTLALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred ccc--cCCCCEEEEE-----eCCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 222 3568998875 332 244677888999999999987643
|
|
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.03 E-value=16 Score=31.86 Aligned_cols=93 Identities=23% Similarity=0.291 Sum_probs=58.0
Q ss_pred CCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC----CC--CCCCcc
Q 024096 32 VSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ----LP--KANKYD 103 (272)
Q Consensus 32 ~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~----~~--~~~~fD 103 (272)
..++.+||-.|+| .|..+..+++..+. ++++++.++...+.+++. |.. .++...-.. +. ..+.+|
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA----GAD---VVVNGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCc---EEecCCCccHHHHHHHHhCCCCc
Confidence 3477899999876 45566777777777 789999888877776442 331 222211111 11 112688
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|+.. .+. ...+....+.|+++|+++..
T Consensus 246 ~vid~-----~g~---~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 246 AVIDF-----VNN---SATASLAFDILAKGGKLVLV 273 (350)
T ss_pred EEEEC-----CCC---HHHHHHHHHHhhcCCeEEEE
Confidence 88853 211 24577778889999998853
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=85.00 E-value=13 Score=32.38 Aligned_cols=94 Identities=23% Similarity=0.303 Sum_probs=58.3
Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC-----CCCCCC
Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR-----QLPKAN 100 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~-----~~~~~~ 100 (272)
+...+.++.+||=.|+ +.|..+..+++..++++++++.+. ..+.++ ..|. . .+...+-. ......
T Consensus 171 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~----~~g~--~-~~~~~~~~~~~~~~~~~~~ 242 (350)
T cd08274 171 ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVR----ALGA--D-TVILRDAPLLADAKALGGE 242 (350)
T ss_pred hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHH----hcCC--e-EEEeCCCccHHHHHhhCCC
Confidence 4556778999999997 466677777777888998887543 444443 2343 1 22211111 011335
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.+|+|+.. .+ ...+....+.|+++|+++.
T Consensus 243 ~~d~vi~~-----~g----~~~~~~~~~~l~~~G~~v~ 271 (350)
T cd08274 243 PVDVVADV-----VG----GPLFPDLLRLLRPGGRYVT 271 (350)
T ss_pred CCcEEEec-----CC----HHHHHHHHHHhccCCEEEE
Confidence 68988853 21 1246667889999999875
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=85.00 E-value=4.3 Score=31.31 Aligned_cols=93 Identities=19% Similarity=0.188 Sum_probs=56.4
Q ss_pred EEEEECCCchHHHH--HHHHccCCEEEEEcCCHHHHHHHHHHHHHc------CCCCCeEEEEcccCCCCCCCCccEEEEe
Q 024096 37 EVLDIGCGWGTLAI--EIVKQTGCKYTGITLSEEQLKYAEIKVREA------GLQDHIRFYLCDYRQLPKANKYDRIISC 108 (272)
Q Consensus 37 ~vLDiG~G~G~~~~--~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~------g~~~~i~~~~~d~~~~~~~~~fD~V~~~ 108 (272)
+|.=+|+|.++.+. .+++ .+.+|+....+++.++..++.-... .++.++.+ ..|..+.- +..|+|+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~-~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~--~~ad~Iiia 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD-NGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL--EDADIIIIA 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH-CTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH--TT-SEEEE-
T ss_pred CEEEECcCHHHHHHHHHHHH-cCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh--CcccEEEec
Confidence 46678999776543 3444 4779999999998887776643211 11223433 33433221 456888874
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+|....+.+++++...++++-.+++
T Consensus 77 -----vPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 77 -----VPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp -----S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred -----ccHHHHHHHHHHHhhccCCCCEEEE
Confidence 3334457899999999977766665
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.98 E-value=6.3 Score=33.98 Aligned_cols=103 Identities=20% Similarity=0.317 Sum_probs=72.8
Q ss_pred HHHHHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CC
Q 024096 25 VLIEKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KA 99 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~ 99 (272)
-+++--..++|.+|+--|+ +.|+..-++|+..+++|+|+--+++-++++.+.+ |....+.+...|+.+.. .+
T Consensus 141 gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~l---GfD~~idyk~~d~~~~L~~a~P 217 (340)
T COG2130 141 GLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEEL---GFDAGIDYKAEDFAQALKEACP 217 (340)
T ss_pred HHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhc---CCceeeecCcccHHHHHHHHCC
Confidence 3455555778888877654 3778888899888999999999998888877643 55445666666654422 34
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+..|+.+- +++ ..+++.+...|++.+++.+.
T Consensus 218 ~GIDvyfe-----NVG----g~v~DAv~~~ln~~aRi~~C 248 (340)
T COG2130 218 KGIDVYFE-----NVG----GEVLDAVLPLLNLFARIPVC 248 (340)
T ss_pred CCeEEEEE-----cCC----chHHHHHHHhhccccceeee
Confidence 67888773 454 34666677788999999873
|
|
| >cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=84.88 E-value=17 Score=30.79 Aligned_cols=96 Identities=26% Similarity=0.339 Sum_probs=53.9
Q ss_pred CCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-CCCCCCCCccEEEEe
Q 024096 32 VSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY-RQLPKANKYDRIISC 108 (272)
Q Consensus 32 ~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~-~~~~~~~~fD~V~~~ 108 (272)
+.++.+||-.|+ +.|.....+++..++++++++.+ ...+.++ ..|...-+.....+. ........+|+|+..
T Consensus 141 ~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 215 (319)
T cd08267 141 VKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVR----SLGADEVIDYTTEDFVALTAGGEKYDVIFDA 215 (319)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHH----HcCCCEeecCCCCCcchhccCCCCCcEEEEC
Confidence 678899999997 36777778887788899998853 4444443 234311111111111 112234568999864
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..- . .......+. .|+++|+++..
T Consensus 216 ~~~-----~-~~~~~~~~~-~l~~~g~~i~~ 239 (319)
T cd08267 216 VGN-----S-PFSLYRASL-ALKPGGRYVSV 239 (319)
T ss_pred CCc-----h-HHHHHHhhh-ccCCCCEEEEe
Confidence 211 1 112222222 38999999864
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=84.79 E-value=3.4 Score=36.00 Aligned_cols=96 Identities=22% Similarity=0.290 Sum_probs=59.2
Q ss_pred HcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-------cCCCCCC
Q 024096 29 KARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD-------YRQLPKA 99 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d-------~~~~~~~ 99 (272)
...+.++.+||=.||| .|..+..+++..+. .+++++.++...+.+++ .|.. .++... +......
T Consensus 163 ~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~---~v~~~~~~~~~~~i~~~~~~ 235 (345)
T cd08287 163 SAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGAT---DIVAERGEEAVARVRELTGG 235 (345)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc---eEecCCcccHHHHHHHhcCC
Confidence 4566778888888876 45566677777676 48899888765555543 2331 222111 1112233
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+|+|+.. .+. ...+..+.+.++++|+++..
T Consensus 236 ~~~d~il~~-----~g~---~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 236 VGADAVLEC-----VGT---QESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred CCCCEEEEC-----CCC---HHHHHHHHHhhccCCEEEEe
Confidence 468888853 211 35677788889999998864
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=84.42 E-value=3.4 Score=35.93 Aligned_cols=96 Identities=24% Similarity=0.338 Sum_probs=61.9
Q ss_pred HcCCCCCCEEEEECCC--chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc---cc----CCCCCC
Q 024096 29 KARVSKGQEVLDIGCG--WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC---DY----RQLPKA 99 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~---d~----~~~~~~ 99 (272)
.+.+.++.+||=.|++ .|..+..+++..+.+++.++.++...+.+++ .|.. .++.. +. ......
T Consensus 160 ~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~~~~ 232 (341)
T cd08297 160 KAGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKE----LGAD---AFVDFKKSDDVEAVKELTGG 232 (341)
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCc---EEEcCCCccHHHHHHHHhcC
Confidence 3467788999998875 6777788888888899999988876665533 2321 12211 11 111123
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+|+|+... . . ...+..+.+.|+++|+++..
T Consensus 233 ~~vd~vl~~~----~--~--~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 233 GGAHAVVVTA----V--S--AAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred CCCCEEEEcC----C--c--hHHHHHHHHHhhcCCEEEEe
Confidence 5689988521 1 0 24566677888999999864
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=84.35 E-value=3.4 Score=38.03 Aligned_cols=96 Identities=9% Similarity=0.090 Sum_probs=56.6
Q ss_pred HHHHHHcC-CCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 024096 24 SVLIEKAR-VSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272)
Q Consensus 24 ~~l~~~l~-~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272)
+.+++..+ .-.|.+|+=+|+|. |......++..+++|+.+|.++.....+.. .| +.+. ++.++. ..
T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~----~G----~~~~--~leell--~~ 309 (476)
T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM----EG----YQVV--TLEDVV--ET 309 (476)
T ss_pred HHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----cC----ceec--cHHHHH--hc
Confidence 44444433 23689999999996 333333333378899999988765433322 12 2222 232222 46
Q ss_pred ccEEEEechhhccChhhHHHHH-HHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFF-GCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~i~ 139 (272)
.|+|++...- ..++ ++....||||++++-.
T Consensus 310 ADIVI~atGt--------~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 310 ADIFVTATGN--------KDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred CCEEEECCCc--------ccccCHHHHhccCCCcEEEEc
Confidence 8999875321 2333 3677789999998853
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=84.22 E-value=16 Score=33.35 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=55.1
Q ss_pred EEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEe
Q 024096 37 EVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIISC 108 (272)
Q Consensus 37 ~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~~ 108 (272)
+|+=+|+ |..+..+++. .+.+++.+|.+++.++.+++. ..+.++.+|..+.. ....+|.|++.
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-------~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-------LDVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------cCEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 5777777 5555555553 478999999999877766542 14788889886643 23578888875
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.. +......+....+.+.|.-.+++
T Consensus 73 ~~-----~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 73 TD-----SDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred cC-----ChHHHHHHHHHHHHhcCCCeEEE
Confidence 32 22234444455555545555554
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=84.20 E-value=16 Score=35.76 Aligned_cols=151 Identities=16% Similarity=0.083 Sum_probs=85.6
Q ss_pred CEEEEECCCch--HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------CC---------CCCeEEEEcccCCCC
Q 024096 36 QEVLDIGCGWG--TLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA-------GL---------QDHIRFYLCDYRQLP 97 (272)
Q Consensus 36 ~~vLDiG~G~G--~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~-------g~---------~~~i~~~~~d~~~~~ 97 (272)
.+|.=||+|+= +++..++...|.+|+.+|.+++.++.+..++... +. ..++++. .|...
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~-- 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG-- 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH--
Confidence 68999999973 3555555335899999999999988877655332 11 0133333 12221
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCc-cccccCcchhhhhccc-CCCCC-------
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQC-YDEYRLSPGFIKEYIF-PGGCL------- 168 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~~~~~~~-p~~~~------- 168 (272)
-...|+|+=. +.+.+ +-..++++++.+.++|+..|.-.+.+.+-.. .....+...++..+++ |...+
T Consensus 387 -~~~aDlViEa-v~E~~--~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~ 462 (708)
T PRK11154 387 -FKHADVVIEA-VFEDL--ALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIP 462 (708)
T ss_pred -hccCCEEeec-ccccH--HHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEEC
Confidence 2456777643 44544 3457899999999999987765444433221 1112223344444444 22211
Q ss_pred -----CCHHHHHHHhhcCCCcEEEEEEecC
Q 024096 169 -----PSLGRVTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 169 -----~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272)
+..-+....+.++.|...+.+.+..
T Consensus 463 g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~p 492 (708)
T PRK11154 463 HAKTSAETIATTVALAKKQGKTPIVVRDGA 492 (708)
T ss_pred CCCCCHHHHHHHHHHHHHcCCceEEEeccC
Confidence 1112223345667888777776644
|
|
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=84.19 E-value=3.3 Score=35.12 Aligned_cols=96 Identities=26% Similarity=0.285 Sum_probs=61.1
Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC-------CCCC
Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR-------QLPK 98 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~-------~~~~ 98 (272)
+...+.++.+||=.|+ +.|..+..+++..+.++++++.++...+.+++ .|.. .++..+-. ....
T Consensus 130 ~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~ 202 (320)
T cd05286 130 ETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREITG 202 (320)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHcC
Confidence 3445678899999984 46677777887788999999988877766643 2431 22222111 1112
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
...+|+|+.. .+ ...+....+.|+++|+++..
T Consensus 203 ~~~~d~vl~~-----~~----~~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 203 GRGVDVVYDG-----VG----KDTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred CCCeeEEEEC-----CC----cHhHHHHHHhhccCcEEEEE
Confidence 3468988853 21 12455667888999998853
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.01 E-value=4.5 Score=34.49 Aligned_cols=97 Identities=24% Similarity=0.323 Sum_probs=58.6
Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-------CCC
Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-------LPK 98 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-------~~~ 98 (272)
....+.++.+||=.|+| .|..+..+++..+.+ ++++..+++..+.+++ .|.. .++...-.+ ...
T Consensus 123 ~~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~l~~~~~ 195 (312)
T cd08269 123 RRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARE----LGAT---EVVTDDSEAIVERVRELTG 195 (312)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---eEecCCCcCHHHHHHHHcC
Confidence 34556788888888754 445556666667888 9998888776664432 2331 222211111 112
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
...+|+++... +. ...+....+.|+++|+++..
T Consensus 196 ~~~vd~vld~~-----g~---~~~~~~~~~~l~~~g~~~~~ 228 (312)
T cd08269 196 GAGADVVIEAV-----GH---QWPLDLAGELVAERGRLVIF 228 (312)
T ss_pred CCCCCEEEECC-----CC---HHHHHHHHHHhccCCEEEEE
Confidence 35689998641 11 23566677889999998864
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.88 E-value=9.4 Score=33.00 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=54.6
Q ss_pred CEEEEECCC-ch-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC----CCeEEEEcccCCCCCCCCccEEEEec
Q 024096 36 QEVLDIGCG-WG-TLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ----DHIRFYLCDYRQLPKANKYDRIISCG 109 (272)
Q Consensus 36 ~~vLDiG~G-~G-~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~----~~i~~~~~d~~~~~~~~~fD~V~~~~ 109 (272)
++|+=+|+| .| .++..|++. +..|+.++-+++.++..++. .|+. .............+..+.+|+|+..-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v 78 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA-GLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC 78 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC-CCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCCcccccccCEEEEEC
Confidence 578999998 34 466666664 78899999876555544432 1220 01011111111111235799998764
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
=-.+ ....++.+...+.++..++.
T Consensus 79 K~~~-----~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 79 KAYD-----AEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred CHHh-----HHHHHHHHHhhCCCCCEEEE
Confidence 3332 36778888889999887654
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=83.68 E-value=6.8 Score=34.67 Aligned_cols=91 Identities=26% Similarity=0.405 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHHHc------CCCCCCEEEEECCC--chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 024096 14 DLEVGQMRKVSVLIEKA------RVSKGQEVLDIGCG--WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH 85 (272)
Q Consensus 14 ~l~~aq~~~~~~l~~~l------~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~ 85 (272)
.+..+-...+..+.... ..++|..||=+|.+ -|..++++|+..+...+...-|.+..+.+++. |-..-
T Consensus 131 ~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~l----GAd~v 206 (347)
T KOG1198|consen 131 ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKL----GADEV 206 (347)
T ss_pred cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHc----CCcEe
Confidence 34445555566666666 78889999988766 45678888888554444455677777777654 43222
Q ss_pred eEEEEcccCCCC-C--CCCccEEEEe
Q 024096 86 IRFYLCDYRQLP-K--ANKYDRIISC 108 (272)
Q Consensus 86 i~~~~~d~~~~~-~--~~~fD~V~~~ 108 (272)
+.+...|..+.. . ...||+|+-+
T Consensus 207 vdy~~~~~~e~~kk~~~~~~DvVlD~ 232 (347)
T KOG1198|consen 207 VDYKDENVVELIKKYTGKGVDVVLDC 232 (347)
T ss_pred ecCCCHHHHHHHHhhcCCCccEEEEC
Confidence 333333332222 2 4579999864
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=83.56 E-value=7.1 Score=36.92 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=51.5
Q ss_pred HcCCCCCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHc-----CC--CCCeEEEEcccCCCC-
Q 024096 29 KARVSKGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREA-----GL--QDHIRFYLCDYRQLP- 97 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~-----g~--~~~i~~~~~d~~~~~- 97 (272)
.++.+.|.+||-.|+. |.++..++++ .|.+|++++.+..........+... |. ..++.++.+|+.+..
T Consensus 74 ~~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 74 ELDTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 4455678889888864 4455544433 4789999988877665444333221 11 135889999998754
Q ss_pred ---CCCCccEEEEech
Q 024096 98 ---KANKYDRIISCGM 110 (272)
Q Consensus 98 ---~~~~fD~V~~~~~ 110 (272)
.-+..|+|+++..
T Consensus 153 I~~aLggiDiVVn~AG 168 (576)
T PLN03209 153 IGPALGNASVVICCIG 168 (576)
T ss_pred HHHHhcCCCEEEEccc
Confidence 2256898887643
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=83.48 E-value=15 Score=26.84 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=54.2
Q ss_pred EEEEECCCchH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEechhhc
Q 024096 37 EVLDIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGMIEH 113 (272)
Q Consensus 37 ~vLDiG~G~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~~~~ 113 (272)
+|+|+|-|.=. .+..|+++ |..++++|+++. .+ +..+.++.-|+.+.. -=...|+|.|.-.
T Consensus 16 kVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~---~a---------~~g~~~v~DDitnP~~~iY~~A~lIYSiRp--- 79 (129)
T COG1255 16 KVVEVGIGFFLDVAKRLAER-GFDVLATDINEK---TA---------PEGLRFVVDDITNPNISIYEGADLIYSIRP--- 79 (129)
T ss_pred cEEEEccchHHHHHHHHHHc-CCcEEEEecccc---cC---------cccceEEEccCCCccHHHhhCccceeecCC---
Confidence 99999998643 55666665 899999999886 11 136789999988765 2257899998632
Q ss_pred cChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 114 VGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
..++...+-.+++. -|..+++..
T Consensus 80 --ppEl~~~ildva~a--Vga~l~I~p 102 (129)
T COG1255 80 --PPELQSAILDVAKA--VGAPLYIKP 102 (129)
T ss_pred --CHHHHHHHHHHHHh--hCCCEEEEe
Confidence 22333444344443 344555543
|
|
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=83.46 E-value=1.1 Score=42.15 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=31.0
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCH
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSE 67 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~ 67 (272)
+.++..|||+||.+|+++...++. .+.-|+|+|+-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 468889999999999999888877 467899999866
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.33 E-value=18 Score=29.56 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=48.4
Q ss_pred CCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----------C
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK-----------A 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~-----------~ 99 (272)
++.++|=.|+ +|.++..+++. .+.++++++.++.......+.++..+ .++.++.+|+.+... -
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678887776 44444444433 47899999888776665555554433 368899999876431 1
Q ss_pred CCccEEEEech
Q 024096 100 NKYDRIISCGM 110 (272)
Q Consensus 100 ~~fD~V~~~~~ 110 (272)
++.|.|+.+..
T Consensus 83 ~~id~vi~~ag 93 (250)
T PRK12939 83 GGLDGLVNNAG 93 (250)
T ss_pred CCCCEEEECCC
Confidence 46898887654
|
|
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=83.29 E-value=5.5 Score=34.53 Aligned_cols=94 Identities=30% Similarity=0.434 Sum_probs=57.1
Q ss_pred CCCCCCEEEEECCC-chHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc------cCCCCCCCCc
Q 024096 31 RVSKGQEVLDIGCG-WGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD------YRQLPKANKY 102 (272)
Q Consensus 31 ~~~~~~~vLDiG~G-~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d------~~~~~~~~~f 102 (272)
.+.++.+||=.|+| .|..+..+++..+ .++++++.+++..+.+++ .|.. .++..+ +.+......+
T Consensus 164 ~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~i~~~~~~~~~ 236 (340)
T cd05284 164 YLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGAD---HVLNASDDVVEEVRELTGGRGA 236 (340)
T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCc---EEEcCCccHHHHHHHHhCCCCC
Confidence 35678899999865 3444455666655 789999888876665543 2431 222111 1112233468
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
|+|+.. .+. ...++...+.|+++|+++..
T Consensus 237 dvvld~-----~g~---~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 237 DAVIDF-----VGS---DETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred CEEEEc-----CCC---HHHHHHHHHHhhcCCEEEEE
Confidence 999863 221 24567777888999999863
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.22 E-value=21 Score=30.64 Aligned_cols=97 Identities=24% Similarity=0.336 Sum_probs=60.4
Q ss_pred cCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-cC----CCCCCCCc
Q 024096 30 ARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD-YR----QLPKANKY 102 (272)
Q Consensus 30 l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d-~~----~~~~~~~f 102 (272)
..+.++.+||=.|+ +.|..+..+++..+.+++.++.+++..+.+++ .|...-+.....+ .. .......+
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLTGEKGV 211 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHhCCCCc
Confidence 45678889998874 47778888888778887778888887777643 2431001111111 11 11123568
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
|+++... + ...+....+.|+++|+++..
T Consensus 212 d~~i~~~-----~----~~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 212 NLVLDCV-----G----GSYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred eEEEECC-----c----hHHHHHHHHHhccCCeEEEE
Confidence 8888632 1 24566677889999998853
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=83.18 E-value=10 Score=28.66 Aligned_cols=86 Identities=22% Similarity=0.269 Sum_probs=50.7
Q ss_pred EEEECCCc-hH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc----------cCCCC-CCCCccE
Q 024096 38 VLDIGCGW-GT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD----------YRQLP-KANKYDR 104 (272)
Q Consensus 38 vLDiG~G~-G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d----------~~~~~-~~~~fD~ 104 (272)
|+=+|+|. |. ++..|++ .+.+|+.+.-++ ..+..++. | +.+...+ ..... ....+|+
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~-~~~~~~~~----g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 70 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP-RLEAIKEQ----G----LTITGPDGDETVQPPIVISAPSADAGPYDL 70 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH-HHHHHHHH----C----EEEEETTEEEEEEEEEEESSHGHHHSTESE
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEccc-cHHhhhhe----e----EEEEecccceecccccccCcchhccCCCcE
Confidence 45567773 33 3444444 588999999766 45543332 2 2222222 11111 3468999
Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
|+..---. +....++.+...++|+..+++
T Consensus 71 viv~vKa~-----~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 71 VIVAVKAY-----QLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp EEE-SSGG-----GHHHHHHHHCTGEETTEEEEE
T ss_pred EEEEeccc-----chHHHHHHHhhccCCCcEEEE
Confidence 99863222 347889999999999977765
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=83.15 E-value=31 Score=31.38 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=46.5
Q ss_pred CCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEE
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRI 105 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V 105 (272)
+..+|+=+|+|. ++..+++. .+.+++.+|.+++.++..++.. ..+.++.+|..+.. .-+.+|.|
T Consensus 230 ~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~v 301 (453)
T PRK09496 230 PVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADAF 301 (453)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCEE
Confidence 457899998864 44444433 4789999999998877766541 25678999987643 23578888
Q ss_pred EEe
Q 024096 106 ISC 108 (272)
Q Consensus 106 ~~~ 108 (272)
++.
T Consensus 302 i~~ 304 (453)
T PRK09496 302 IAL 304 (453)
T ss_pred EEC
Confidence 764
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=83.05 E-value=6 Score=29.41 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=46.3
Q ss_pred CEEEEECCCchH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC--CCCccEEEEechhh
Q 024096 36 QEVLDIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK--ANKYDRIISCGMIE 112 (272)
Q Consensus 36 ~~vLDiG~G~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~--~~~fD~V~~~~~~~ 112 (272)
.+|+|+|-|.=. .+..|.++ |..|+++|+.+. ... ..+.++.-|+.+... =...|+|.|...-.
T Consensus 15 ~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~-------~a~-----~g~~~v~DDif~P~l~iY~~a~lIYSiRPP~ 81 (127)
T PF03686_consen 15 GKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR-------KAP-----EGVNFVVDDIFNPNLEIYEGADLIYSIRPPP 81 (127)
T ss_dssp SEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES--T
T ss_pred CcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc-------ccc-----cCcceeeecccCCCHHHhcCCcEEEEeCCCh
Confidence 499999999654 45555554 899999999886 111 256888888887541 15789999975433
Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
- +...+-++++ +-|.-+++....
T Consensus 82 E-----l~~~il~lA~--~v~adlii~pL~ 104 (127)
T PF03686_consen 82 E-----LQPPILELAK--KVGADLIIRPLG 104 (127)
T ss_dssp T-----SHHHHHHHHH--HHT-EEEEE-BT
T ss_pred H-----HhHHHHHHHH--HhCCCEEEECCC
Confidence 2 3444444554 346667775433
|
; PDB: 2K4M_A. |
| >KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.99 E-value=0.67 Score=37.76 Aligned_cols=91 Identities=13% Similarity=0.167 Sum_probs=66.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---- 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---- 97 (272)
.+.+++-+...+|...+|+--|.|+-+..+.+. +..+++++|-+|.....|+...... .++++..+.+.+..++
T Consensus 32 ~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el-~~~~l~a~Lg~Fs~~~~l~~ 110 (303)
T KOG2782|consen 32 LDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL-MHPTLKAVLGNFSYIKSLIA 110 (303)
T ss_pred hhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh-cchhHHHHHhhhHHHHHHHH
Confidence 466778888889999999999999988888887 7889999999999888887766432 2334444555555443
Q ss_pred ----CCCCccEEEEechhhcc
Q 024096 98 ----KANKYDRIISCGMIEHV 114 (272)
Q Consensus 98 ----~~~~fD~V~~~~~~~~~ 114 (272)
.+..+|-|........+
T Consensus 111 ~~gl~~~~vDGiLmDlGcSSM 131 (303)
T KOG2782|consen 111 DTGLLDVGVDGILMDLGCSSM 131 (303)
T ss_pred HhCCCcCCcceEEeecCcccc
Confidence 34678888776544433
|
|
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=82.87 E-value=3.7 Score=35.25 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=62.2
Q ss_pred HHHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-------CC
Q 024096 27 IEKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-------LP 97 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-------~~ 97 (272)
.+...+.++.+||=.|+ +.|..+..+++..+.++++++.+++..+.+++ .|.. .++...-.+ ..
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~ 207 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRA----LGAD---VAVDYTRPDWPDQVREAL 207 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCC---EEEecCCccHHHHHHHHc
Confidence 34456778889999884 46777788888888999999988887766643 2331 122111111 11
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+.. .+. .......+.|+++|+++..
T Consensus 208 ~~~~~d~vl~~-----~g~----~~~~~~~~~l~~~g~~v~~ 240 (324)
T cd08244 208 GGGGVTVVLDG-----VGG----AIGRAALALLAPGGRFLTY 240 (324)
T ss_pred CCCCceEEEEC-----CCh----HhHHHHHHHhccCcEEEEE
Confidence 23468999864 221 2346677889999998853
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=82.69 E-value=1.9 Score=39.29 Aligned_cols=91 Identities=18% Similarity=0.306 Sum_probs=53.8
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEE------EEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYT------GITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRI 105 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~------gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V 105 (272)
-.+.+|+=||||+=+.+..+--+ .|.+|+ ++|......+.|.+ .|. . ..+..+. -...|+|
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~----dGF----~--v~~~~Ea--~~~ADvV 101 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE----NGF----K--VGTYEEL--IPQADLV 101 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh----cCC----c--cCCHHHH--HHhCCEE
Confidence 36789999999964432222111 344444 34443444444433 243 1 1222222 2578999
Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
++. +|+.....+.+++...||||..|.++.
T Consensus 102 viL-----lPDt~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 102 INL-----TPDKQHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred EEc-----CChHHHHHHHHHHHhhCCCCCEEEecC
Confidence 985 444445667799999999999999854
|
|
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.64 E-value=8.2 Score=33.57 Aligned_cols=93 Identities=20% Similarity=0.224 Sum_probs=57.5
Q ss_pred CCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC-------CCCCCCCcc
Q 024096 33 SKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR-------QLPKANKYD 103 (272)
Q Consensus 33 ~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~-------~~~~~~~fD 103 (272)
.++.+||-.|+|. |..+..+++..+. ++++++.++...+.+++. |.. .++...-. .......+|
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l----g~~---~~~~~~~~~~~~~~~~~~~~~~~d 234 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM----GAT---RAVNVAKEDLRDVMAELGMTEGFD 234 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCc---EEecCccccHHHHHHHhcCCCCCC
Confidence 4678888888763 6667777777676 688888888766665542 331 22211111 112335689
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+|+.. .+. ...+..+.+.|+++|.++...
T Consensus 235 ~v~d~-----~g~---~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 235 VGLEM-----SGA---PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred EEEEC-----CCC---HHHHHHHHHHHhcCCEEEEEe
Confidence 88862 111 245666778899999998753
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.47 E-value=28 Score=29.18 Aligned_cols=74 Identities=14% Similarity=0.123 Sum_probs=44.4
Q ss_pred CCCEEEEECCCch-H----HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------
Q 024096 34 KGQEVLDIGCGWG-T----LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----------- 97 (272)
Q Consensus 34 ~~~~vLDiG~G~G-~----~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----------- 97 (272)
.+.++|=.|++.| + ++..+++. |++|+.++.+....+.+.+..... +.+.++.+|+.+..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~-G~~vil~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~ 80 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHRE-GAELAFTYQNDKLKGRVEEFAAQL---GSDIVLPCDVAEDASIDAMFAELGK 80 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHC-CCEEEEEecchhHHHHHHHHHhcc---CCceEeecCCCCHHHHHHHHHHHHh
Confidence 4678888998652 3 44555554 788888877643333333322221 24567888987643
Q ss_pred CCCCccEEEEechh
Q 024096 98 KANKYDRIISCGMI 111 (272)
Q Consensus 98 ~~~~fD~V~~~~~~ 111 (272)
.-+++|+++.+..+
T Consensus 81 ~~g~iD~linnAg~ 94 (262)
T PRK07984 81 VWPKFDGFVHSIGF 94 (262)
T ss_pred hcCCCCEEEECCcc
Confidence 12468998887653
|
|
| >PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2 | Back alignment and domain information |
|---|
Probab=82.35 E-value=3.4 Score=29.14 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=45.9
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCC-----CC-CHHHHHHHhhcCC
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGC-----LP-SLGRVTSAMTSSS 182 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----~~-~~~~~~~~l~~~~ 182 (272)
+++-|.+.++..+.++.+... -.|.++++-- |.... .....++. .+||++. .| ..+++.+. ..++
T Consensus 3 DvLIHYp~~d~~~~l~~La~~--t~~~~ifTfA--P~T~~---L~~m~~iG-~lFP~~dRsp~i~~~~e~~l~~~-l~~~ 73 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASR--TRGSLIFTFA--PRTPL---LALMHAIG-KLFPRPDRSPRIYPHREEDLRRA-LAAA 73 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHh--ccCcEEEEEC--CCCHH---HHHHHHHh-ccCCCCCCCCcEEEeCHHHHHHH-HHhC
Confidence 455678888888999998874 5677777422 22211 11112222 3455543 22 23455544 4459
Q ss_pred CcEEEEEEecCccHH
Q 024096 183 GLCVEHLENIGIHYY 197 (272)
Q Consensus 183 Gf~v~~~~~~~~~~~ 197 (272)
||.+...+.+...|+
T Consensus 74 g~~~~r~~ris~gFY 88 (97)
T PF07109_consen 74 GWRIGRTERISSGFY 88 (97)
T ss_pred CCeeeecccccCcCh
Confidence 999988877665443
|
1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process |
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=82.27 E-value=15 Score=31.52 Aligned_cols=95 Identities=21% Similarity=0.301 Sum_probs=60.1
Q ss_pred cCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----C--CCCC
Q 024096 30 ARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL----P--KANK 101 (272)
Q Consensus 30 l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~--~~~~ 101 (272)
..+.++.+||=.|. +.|..+..+++..+.++++++.++...+.+++.+ |.. .++..+-.+. . ....
T Consensus 141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~v~~~~~~~ 214 (329)
T cd05288 141 GKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEEL---GFD---AAINYKTPDLAEALKEAAPDG 214 (329)
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhc---CCc---eEEecCChhHHHHHHHhccCC
Confidence 45677889998884 4677777888877889999998887777665422 321 2221111010 1 1246
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|+++.. .+ ...+....+.|+++|+++..
T Consensus 215 ~d~vi~~-----~g----~~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 215 IDVYFDN-----VG----GEILDAALTLLNKGGRIALC 243 (329)
T ss_pred ceEEEEc-----ch----HHHHHHHHHhcCCCceEEEE
Confidence 8888753 22 23566777889999998753
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.06 E-value=13 Score=32.16 Aligned_cols=88 Identities=22% Similarity=0.137 Sum_probs=51.3
Q ss_pred CCEEEEECCCchH--HHHHHHHccC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEech
Q 024096 35 GQEVLDIGCGWGT--LAIEIVKQTG--CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGM 110 (272)
Q Consensus 35 ~~~vLDiG~G~G~--~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~ 110 (272)
..+|.=||+|.-+ ++..+.+. + .+|+++|.++...+.+++ .|.. .. ...+..+ .....|+|+..-.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~~~~~~a~~----~g~~--~~-~~~~~~~--~~~~aDvViiavp 75 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSAETRARARE----LGLG--DR-VTTSAAE--AVKGADLVILCVP 75 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCHHHHHHHHh----CCCC--ce-ecCCHHH--HhcCCCEEEECCC
Confidence 3579999998633 33444443 4 489999999887666543 2321 11 1112111 1245798887643
Q ss_pred hhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 111 IEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
.. ....+++.+...++++..++
T Consensus 76 ~~-----~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 76 VG-----ASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred HH-----HHHHHHHHHHhhCCCCCEEE
Confidence 32 33566777777788887554
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.05 E-value=12 Score=31.76 Aligned_cols=84 Identities=23% Similarity=0.274 Sum_probs=49.0
Q ss_pred EEEEECCCc--hHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhc
Q 024096 37 EVLDIGCGW--GTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH 113 (272)
Q Consensus 37 ~vLDiG~G~--G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~ 113 (272)
+|.=||+|. |.++..+.+. ...+++++|.++...+.+.+ .|.. .. ..+..+. ...|+|+..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g~~---~~-~~~~~~~---~~aD~Vila----- 65 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LGLV---DE-IVSFEEL---KKCDVIFLA----- 65 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CCCC---cc-cCCHHHH---hcCCEEEEe-----
Confidence 567788885 3355555554 22489999999887666542 2321 11 1122222 127998875
Q ss_pred cChhhHHHHHHHHHhcCccCcEEE
Q 024096 114 VGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
++.......++++.. ++++..++
T Consensus 66 vp~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 66 IPVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred CcHHHHHHHHHHHhc-cCCCCEEE
Confidence 344445677788877 77776443
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.88 E-value=14 Score=31.84 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=50.1
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.+.++|=.|++.|. ++..|++ .|++|+.+.-++...+.+.+.+....-..++.++.+|+.+.. ..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~-~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAA-AGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 46788888876553 3344444 488999998887766665555543321236889999987754 12
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
++.|+++.+...
T Consensus 92 ~~iD~li~nAG~ 103 (313)
T PRK05854 92 RPIHLLINNAGV 103 (313)
T ss_pred CCccEEEECCcc
Confidence 468998877544
|
|
| >cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Probab=81.61 E-value=27 Score=29.26 Aligned_cols=91 Identities=22% Similarity=0.363 Sum_probs=55.0
Q ss_pred CCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc---ccCCCCCCCCccEEE
Q 024096 32 VSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC---DYRQLPKANKYDRII 106 (272)
Q Consensus 32 ~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~---d~~~~~~~~~fD~V~ 106 (272)
+.++.+||=.|+ +.|..+..+++..+.+++.++.++ ..+.++ ..+.. .++.. +..+......+|+++
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~----~~g~~---~~~~~~~~~~~~~~~~~~~d~v~ 213 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLR----SLGAD---EVIDYTKGDFERAAAPGGVDAVL 213 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHH----HcCCC---EEEeCCCCchhhccCCCCceEEE
Confidence 678889998886 356666667776788998887665 444442 23321 22221 111112334688887
Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.. .+ ...+....+.|+++|.++..
T Consensus 214 ~~-----~~----~~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 214 DT-----VG----GETLARSLALVKPGGRLVSI 237 (309)
T ss_pred EC-----Cc----hHHHHHHHHHHhcCcEEEEE
Confidence 53 22 12566677888999998753
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et |
| >PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A | Back alignment and domain information |
|---|
Probab=81.60 E-value=10 Score=25.50 Aligned_cols=45 Identities=22% Similarity=0.425 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchH-HHHHHHHc--cCCEEEEEcC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGT-LAIEIVKQ--TGCKYTGITL 65 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~-~~~~l~~~--~~~~v~gvd~ 65 (272)
+.++.+..+-.+..+.+||-+||-+|. ++..++.. .++..+|+-.
T Consensus 25 ~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 25 NQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp HHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred HHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 344555555555555899999999995 55445444 5677777765
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=81.53 E-value=3.7 Score=35.26 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=60.6
Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-------CCC
Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-------LPK 98 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-------~~~ 98 (272)
....+.++.+||=.|+ +.|..+..+++..|++++.+.-+.+..+.+++ .|.. .++..+-.+ ...
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~~ 205 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA----LGIG---PVVSTEQPGWQDKVREAAG 205 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh----cCCC---EEEcCCCchHHHHHHHHhC
Confidence 4456778999998875 37778888888888888888777766555543 2431 222221111 112
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
...+|+|+.. .+. ..+.++.+.|+++|+++..
T Consensus 206 ~~~~d~v~d~-----~g~----~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 206 GAPISVALDS-----VGG----KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred CCCCcEEEEC-----CCC----hhHHHHHHhhcCCcEEEEE
Confidence 3468998853 221 2345677889999998853
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=81.51 E-value=21 Score=30.48 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=52.0
Q ss_pred EEEEECCCchH--HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC---CCeEEEEcccCCCCCCCCccEEEEechh
Q 024096 37 EVLDIGCGWGT--LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ---DHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272)
Q Consensus 37 ~vLDiG~G~G~--~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~---~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272)
+|+=+|+|.-+ ++..|++ .+.+|+.++.+++..+..++. |+. ........-..+......+|+|+..---
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~ 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ-AGHDVTLVARRGAHLDALNEN----GLRLEDGEITVPVLAADDPAELGPQDLVILAVKA 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCeEEEEECChHHHHHHHHc----CCcccCCceeecccCCCChhHcCCCCEEEEeccc
Confidence 68889998543 4444555 377999999877665544432 321 1111000001111122678999876432
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.+...+++.+...+.++..++.
T Consensus 77 -----~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 77 -----YQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred -----ccHHHHHHHHhhhcCCCCEEEE
Confidence 2346788888888887766654
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.45 E-value=13 Score=32.59 Aligned_cols=95 Identities=14% Similarity=0.105 Sum_probs=57.2
Q ss_pred CEEEEECCCch--HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-------cCCC-----CCeEEEEcccCCCCCCCC
Q 024096 36 QEVLDIGCGWG--TLAIEIVKQTGCKYTGITLSEEQLKYAEIKVRE-------AGLQ-----DHIRFYLCDYRQLPKANK 101 (272)
Q Consensus 36 ~~vLDiG~G~G--~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~-------~g~~-----~~i~~~~~d~~~~~~~~~ 101 (272)
.+|-=||+|+= +++..++. .|.+|+..|.+++..+.++..+.. .++. .++.+. .|+.+ .-..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~--av~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALA-HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA--CVAD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH--HhcC
Confidence 57889999953 34455555 489999999999888776654431 2211 122221 12111 1145
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
.|+|+-. +.+.+ +-...+++++.+.++|+..|.
T Consensus 84 aDlViEa-vpE~l--~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 84 ADFIQES-APERE--ALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred CCEEEEC-CcCCH--HHHHHHHHHHHHhCCCCeEEE
Confidence 6777753 23333 234688999999999987444
|
|
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=81.40 E-value=12 Score=32.84 Aligned_cols=100 Identities=18% Similarity=0.314 Sum_probs=60.1
Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEE--EcccCC----C--C
Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFY--LCDYRQ----L--P 97 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~--~~d~~~----~--~ 97 (272)
....+.++.+||-+|+| .|..+..+++..++ .+++++.++...+.+++. |....+.+. ..+..+ + .
T Consensus 175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~ 250 (364)
T PLN02702 175 RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL----GADEIVLVSTNIEDVESEVEEIQKA 250 (364)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEecCcccccHHHHHHHHhhh
Confidence 45567788899999875 45566777777665 488899887766655542 432111110 011111 1 1
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+.. .+. ...+....+.|+++|+++..
T Consensus 251 ~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 251 MGGGIDVSFDC-----VGF---NKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred cCCCCCEEEEC-----CCC---HHHHHHHHHHHhcCCEEEEE
Confidence 12468888763 221 23567778889999998753
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.32 E-value=18 Score=30.89 Aligned_cols=96 Identities=17% Similarity=0.216 Sum_probs=56.6
Q ss_pred CEEEEECCCchH--HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc--------CCC---------CCeEEEEcccCCC
Q 024096 36 QEVLDIGCGWGT--LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA--------GLQ---------DHIRFYLCDYRQL 96 (272)
Q Consensus 36 ~~vLDiG~G~G~--~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~--------g~~---------~~i~~~~~d~~~~ 96 (272)
.+|.=||+|.-+ ++..+++ .+.+|+.+|.+++.++.+++.+... .+. .++.+ ..|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH
Confidence 478889999544 3344444 4789999999999888887654211 110 12222 2232221
Q ss_pred CCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 97 PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 97 ~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
-...|+|+..-. +.. +....+++++...++++-.+..
T Consensus 82 --~~~aDlVieavp-e~~--~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 82 --VKDADLVIEAVP-EDP--EIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred --hcCCCEEEEecc-CCH--HHHHHHHHHHHhhCCCCCEEEE
Confidence 245688886422 111 2346788888888877765543
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.89 E-value=18 Score=31.67 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=50.3
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.+.+||=.|++.|. ++..+++ .+.+|+.++.++...+...+.++..+ .++.++..|+.+.. ..
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~-~G~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFAR-RGARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 45688888875442 3334444 48899999998887776666665544 36778888987643 12
Q ss_pred CCccEEEEech
Q 024096 100 NKYDRIISCGM 110 (272)
Q Consensus 100 ~~fD~V~~~~~ 110 (272)
+.+|+++.+..
T Consensus 83 g~iD~lVnnAG 93 (330)
T PRK06139 83 GRIDVWVNNVG 93 (330)
T ss_pred CCCCEEEECCC
Confidence 56899988764
|
|
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=80.59 E-value=36 Score=29.19 Aligned_cols=94 Identities=27% Similarity=0.444 Sum_probs=59.4
Q ss_pred HcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------CCC
Q 024096 29 KARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------KAN 100 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------~~~ 100 (272)
...+.++.+||=.|+ +.|..+..+++..+.+++.++.++...+.+++ .|.. .+...+-.... .+.
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~~~~ 206 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKS----LGCD---RPINYKTEDLGEVLKKEYPK 206 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHH----cCCc---eEEeCCCccHHHHHHHhcCC
Confidence 345678899998884 46777778888778899999888876666543 2321 12221111110 124
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.+|+|+.. .+ ...+....+.|+++|+++.
T Consensus 207 ~vd~v~~~-----~g----~~~~~~~~~~l~~~g~~v~ 235 (329)
T cd08250 207 GVDVVYES-----VG----GEMFDTCVDNLALKGRLIV 235 (329)
T ss_pred CCeEEEEC-----Cc----HHHHHHHHHHhccCCeEEE
Confidence 58888753 22 2456667788899999875
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.54 E-value=16 Score=29.84 Aligned_cols=75 Identities=15% Similarity=0.117 Sum_probs=48.8
Q ss_pred CCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----------C
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK-----------A 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~-----------~ 99 (272)
.+.++|-.|+ +|.++..+++. .+.+|++++.++...+...+.+...+ .++.++.+|+.+... -
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4567888885 45554444443 47899999998876655555444332 468889999876540 1
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
.+.|.++.+...
T Consensus 82 ~~id~lv~~ag~ 93 (241)
T PRK07454 82 GCPDVLINNAGM 93 (241)
T ss_pred CCCCEEEECCCc
Confidence 357888876543
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=80.41 E-value=29 Score=30.10 Aligned_cols=102 Identities=22% Similarity=0.154 Sum_probs=51.7
Q ss_pred HcCCCCCCEEEEECCCc-hHHHHHHHHc-cCCEEEEEcCCHHHH-HHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccE
Q 024096 29 KARVSKGQEVLDIGCGW-GTLAIEIVKQ-TGCKYTGITLSEEQL-KYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDR 104 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~gvd~s~~~~-~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~ 104 (272)
.++..++.+|+-+|+|. |......... ...+++.++.++... +.+++ .|. .... ..++. .-...|+
T Consensus 172 ~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----~g~----~~~~--~~~~~~~l~~aDv 241 (311)
T cd05213 172 IFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----LGG----NAVP--LDELLELLNEADV 241 (311)
T ss_pred HhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----cCC----eEEe--HHHHHHHHhcCCE
Confidence 33334688999999974 3333332322 336899999987644 33333 221 2222 11222 1245799
Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCC
Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272)
Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272)
|++.-.-.+. ...++......+.++.+++ +...|.+
T Consensus 242 Vi~at~~~~~-----~~~~~~~~~~~~~~~~~vi-DlavPrd 277 (311)
T cd05213 242 VISATGAPHY-----AKIVERAMKKRSGKPRLIV-DLAVPRD 277 (311)
T ss_pred EEECCCCCch-----HHHHHHHHhhCCCCCeEEE-EeCCCCC
Confidence 9987554432 2333333332222455554 5655544
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.32 E-value=15 Score=31.61 Aligned_cols=97 Identities=26% Similarity=0.328 Sum_probs=61.0
Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE
Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRI 105 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V 105 (272)
..+.+.++.+||=.|+ +.|..+..+++..+.+++.++.+++..+.+++. ...-+..+ .+ ..++... ..+|++
T Consensus 156 ~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~v~~~---~~~d~~ 229 (334)
T PRK13771 156 RRAGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGS-KF-SEEVKKI---GGADIV 229 (334)
T ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCch-hH-HHHHHhc---CCCcEE
Confidence 3446778899999988 367788888888888999999988888777543 11111101 00 0011111 247888
Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+.. .+. ..+..+.+.|+++|+++..
T Consensus 230 ld~-----~g~----~~~~~~~~~l~~~G~~v~~ 254 (334)
T PRK13771 230 IET-----VGT----PTLEESLRSLNMGGKIIQI 254 (334)
T ss_pred EEc-----CCh----HHHHHHHHHHhcCCEEEEE
Confidence 753 211 2356677778999998764
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.21 E-value=33 Score=28.54 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=43.1
Q ss_pred CCCEEEEECCCc-hHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------C
Q 024096 34 KGQEVLDIGCGW-GTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------K 98 (272)
Q Consensus 34 ~~~~vLDiG~G~-G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~ 98 (272)
.+.++|-.|++. ++++..+++. .|++|+.++.+....+..++...... ..++.++.+|+.+.. .
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 467899999752 4444444332 47888887654322222222222221 136788889987653 1
Q ss_pred CCCccEEEEech
Q 024096 99 ANKYDRIISCGM 110 (272)
Q Consensus 99 ~~~fD~V~~~~~ 110 (272)
-+++|+++.+-.
T Consensus 85 ~g~ld~lv~nag 96 (257)
T PRK08594 85 VGVIHGVAHCIA 96 (257)
T ss_pred CCCccEEEECcc
Confidence 257898886543
|
|
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=80.21 E-value=5.7 Score=34.01 Aligned_cols=92 Identities=16% Similarity=0.180 Sum_probs=57.4
Q ss_pred CCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc---c----CCCCCCCC
Q 024096 31 RVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD---Y----RQLPKANK 101 (272)
Q Consensus 31 ~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d---~----~~~~~~~~ 101 (272)
.+.++.+||=.|+ +.|..+..+++..+++++++..++...+.+++ .|.. .+.... . ........
T Consensus 135 ~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~ 207 (323)
T cd05282 135 KLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKA----LGAD---EVIDSSPEDLAQRVKEATGGAG 207 (323)
T ss_pred cCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHh----cCCC---EEecccchhHHHHHHHHhcCCC
Confidence 4568889998886 37778888888888999988888776665542 2431 111111 1 11112346
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+|+|+... +.+ ......+.|+++|+++.
T Consensus 208 ~d~vl~~~-----g~~----~~~~~~~~l~~~g~~v~ 235 (323)
T cd05282 208 ARLALDAV-----GGE----SATRLARSLRPGGTLVN 235 (323)
T ss_pred ceEEEECC-----CCH----HHHHHHHhhCCCCEEEE
Confidence 89888532 211 23455678899999875
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.18 E-value=17 Score=31.67 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=54.0
Q ss_pred EEEEECCCc-hH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHH---H---HcCCCCCeEEEEcccCCCCCCCCccEEEEe
Q 024096 37 EVLDIGCGW-GT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKV---R---EAGLQDHIRFYLCDYRQLPKANKYDRIISC 108 (272)
Q Consensus 37 ~vLDiG~G~-G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~---~---~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~ 108 (272)
+|.=+|+|. |. ++..|++. +.+|+.++.+++.++..++.- . ...++.++.+. .|..+. ..+.+|+|+..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~-~~~~~Dliiia 78 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-KISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEV-LSDNATCIILA 78 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-CCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHH-HhCCCCEEEEE
Confidence 577889984 33 45555554 778999998887666555431 0 00011122221 121111 11467988874
Q ss_pred chhhccChhhHHHHHHHHHh-cCccCcEEEE
Q 024096 109 GMIEHVGHDYMEEFFGCCES-LLATHGLLVL 138 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~-~LkpgG~l~i 138 (272)
++......+++++.. .++++..++.
T Consensus 79 -----vks~~~~~~l~~l~~~~l~~~~~vv~ 104 (326)
T PRK14620 79 -----VPTQQLRTICQQLQDCHLKKNTPILI 104 (326)
T ss_pred -----eCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 444556788888887 8888876654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 272 | ||||
| 1kp9_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 5e-26 | ||
| 1kpg_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 9e-26 | ||
| 1tpy_A | 287 | Structure Of The Cyclopropane Synthase Mmaa2 From M | 6e-25 | ||
| 1l1e_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 3e-21 | ||
| 2fk7_A | 318 | Crystal Structure Of Hma (Mmaa4) From Mycobacterium | 4e-21 | ||
| 1kpi_A | 302 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 5e-21 | ||
| 4f84_A | 320 | Structure Analysis Of Geranyl Diphosphate Methyltra | 8e-08 | ||
| 3bus_A | 273 | Crystal Structure Of Rebm Length = 273 | 2e-07 | ||
| 3d2l_A | 243 | Crystal Structure Of Sam-Dependent Methyltransferas | 2e-05 | ||
| 2p8j_A | 209 | Crystal Structure Of S-Adenosylmethionine-Dependent | 8e-05 | ||
| 1dus_A | 194 | Mj0882-A Hypothetical Protein From M. Jannaschii Le | 1e-04 | ||
| 3vc1_A | 312 | Crystal Structure Of Geranyl Diphosphate C-Methyltr | 2e-04 | ||
| 3sm3_A | 235 | Crystal Structure Of Sam-Dependent Methyltransferas | 4e-04 | ||
| 3dtn_A | 234 | Crystal Structure Of Putative Methyltransferase-mm_ | 7e-04 |
| >pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1, Apo-Form Length = 287 | Back alignment and structure |
|
| >pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1 Complexed With Sah And Ctab Length = 287 | Back alignment and structure |
|
| >pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From Mycobacterium Tuberculosis Length = 287 | Back alignment and structure |
|
| >pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Pcaa Complexed With S-Adenosyl-L-Homocysteine Length = 287 | Back alignment and structure |
|
| >pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium Tuberculosis, Apo- Form Length = 318 | Back alignment and structure |
|
| >pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa2 Complexed With Sah And Dddmab Length = 302 | Back alignment and structure |
|
| >pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate Methyltransferase In Complex With Sam Length = 320 | Back alignment and structure |
|
| >pdb|3BUS|A Chain A, Crystal Structure Of Rebm Length = 273 | Back alignment and structure |
|
| >pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase (Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90 A Resolution Length = 243 | Back alignment and structure |
|
| >pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent Methyltransferase (Np_349143.1) From Clostridium Acetobutylicum At 2.00 A Resolution Length = 209 | Back alignment and structure |
|
| >pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii Length = 194 | Back alignment and structure |
|
| >pdb|3VC1|A Chain A, Crystal Structure Of Geranyl Diphosphate C-Methyltransferase From Streptomyces Coelicolor A3(2) In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And S-Adenosyl-L-Homocysteine Length = 312 | Back alignment and structure |
|
| >pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases Q8puk2_metma From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target Mar262 Length = 235 | Back alignment and structure |
|
| >pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633 From Methanosarcina Mazei . Length = 234 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Length = 318 | Back alignment and structure |
|---|
Score = 339 bits (871), Expect = e-117
Identities = 69/266 (25%), Positives = 108/266 (40%), Gaps = 13/266 (4%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
TYSCA F+ LE Q KV + ++K + G +LDIGCGWGT V++
Sbjct: 57 RTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNV 116
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
G+TLS+ Q E + + L + DRI+S EH GH+ +
Sbjct: 117 IGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPVDRIVSIEAFEHFGHENYD 174
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPG---------FIKEYIFPGGCLPSL 171
+FF C +++ G + +Q + R FI IFPGG LPS
Sbjct: 175 DFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPST 234
Query: 172 GRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYF 231
+ +G V ++ HY +TLR W + + + + E+ + Y
Sbjct: 235 EMMVEHG-EKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTS-EEVYNRYMKYL 292
Query: 232 DYCAASFKSRIIGDYQIVFSRPGKVA 257
C F ++ + + +PG A
Sbjct: 293 RGCEHYFTDEMLDCSLVTYLKPGAAA 318
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287 | Back alignment and structure |
|---|
Score = 324 bits (834), Expect = e-112
Identities = 74/261 (28%), Positives = 116/261 (44%), Gaps = 13/261 (4%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
TYSCA F+ + L+ Q+ K+ + + K + G +LD+GCGWG + V++
Sbjct: 31 QTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNV 90
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
G+TLS+ Q + + V + R L + Q DRI+S G EH GH+ +
Sbjct: 91 VGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAFEHFGHERYD 148
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPG---------FIKEYIFPGGCLPSL 171
FF LL G+++L I+ R P FI IFPGG LPS+
Sbjct: 149 AFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSI 208
Query: 172 GRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYF 231
V S++G V ++++ HY +TL W + + +AL +E+ + Y
Sbjct: 209 PMVQECA-SANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQAIAL-QSEEVYERYMKYL 266
Query: 232 DYCAASFKSRIIGDYQIVFSR 252
CA F+ I Q +
Sbjct: 267 TGCAEMFRIGYIDVNQFTCQK 287
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Length = 302 | Back alignment and structure |
|---|
Score = 299 bits (769), Expect = e-102
Identities = 72/268 (26%), Positives = 111/268 (41%), Gaps = 20/268 (7%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYSCA F+ LE Q K + ++K + G +LDIGCGWG+ V +
Sbjct: 39 MTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNV 98
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH------- 113
G+TLSE Q + + E + + + + DRI+S G EH
Sbjct: 99 IGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDE--PVDRIVSLGAFEHFADGAGD 156
Query: 114 VGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPG---------FIKEYIFP 164
G + + FF +L G ++L I+ PD+ + FI IFP
Sbjct: 157 AGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFP 216
Query: 165 GGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFI 224
GG LP + +V S++G VE IG +Y TL W + E +AL ++
Sbjct: 217 GGRLPRISQVDYYS-SNAGWKVERYHRIGANYVPTLNAWADALQAHKDEAIAL-KGQETC 274
Query: 225 RTWEYYFDYCAASFKSRIIGDYQIVFSR 252
+ +Y C+ F+ + Q +
Sbjct: 275 DIYMHYLRGCSDLFRDKYTDVCQFTLVK 302
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 6e-62
Identities = 42/239 (17%), Positives = 79/239 (33%), Gaps = 18/239 (7%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
+ +E LE Q + + + ++D GCG G + ++ G +
Sbjct: 86 HSEYEKKVIAELHRLESAQAEFL--MDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRV 143
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
G+TLS Q + + RE + DH+R +C+ P + + E + +
Sbjct: 144 EGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFD--KGAVTASWNNESTMYVDLH 201
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
+ F L G V + Y + I + + S AM +
Sbjct: 202 DLFSEHSRFLKVGGRYVTITGCWNPR-YGQPSKWVSQINAHFECN--IHSRREYLRAM-A 257
Query: 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWE---YYFDYCAA 236
+ L + ++ TL W L G + FI ++ + + AA
Sbjct: 258 DNRLVPHTIVDLTPD---TLPYWELRAT----SSLVTGIEKAFIESYRDGSFQYVLIAA 309
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 2e-60
Identities = 37/257 (14%), Positives = 66/257 (25%), Gaps = 27/257 (10%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
++ + +SEH K + L R+ G +LD+G G G + + G
Sbjct: 5 RIFTIS--ESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITG 62
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
TGI +S A+ + E G+ + + F D K D G G
Sbjct: 63 TGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGG--FA 120
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180
L G++++ E + +L + A
Sbjct: 121 GAEELLAQSLKPGGIMLIGEPYWRQLPATEEI----AQACGVSSTSDFLTLPGLVGAF-D 175
Query: 181 SSGLCVEHLENIGIH--------YYQTLRCWRKNFMGKQSEILALGFN----------EK 222
G V + + T+R W + +
Sbjct: 176 DLGYDVVEMVLADQEGWDRYEAAKWLTMRRWLEANPDDDFAAEVRAELNIAPKRYVTYAR 235
Query: 223 FIRTWEYYFDYCAASFK 239
W +
Sbjct: 236 ECFGWGVFALIARLEHH 252
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 7e-56
Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 11/229 (4%)
Query: 13 EDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKY 72
+ G + ++ +++ +VLDIG G G + I ++ G GI + +
Sbjct: 34 NYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNM 93
Query: 73 AEIKVREAGLQDHIRFYLCDYRQLPKA-NKYDRIISCGMIEHVGHDYMEEFFGCCESLLA 131
A + I F D N +D I S I + + + F C L
Sbjct: 94 AN---ERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLK 150
Query: 132 THGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGG-CLPSLGRVTSAMTSSSGLCVEHLE 190
G L++ A ++ + KEY+ L ++ +T + +
Sbjct: 151 PTGTLLITDYCATEKENWDDE-----FKEYVKQRKYTLITVEEYADILT-ACNFKNVVSK 204
Query: 191 NIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFK 239
++ ++ Q L K + E L L +KFI + + S +
Sbjct: 205 DLSDYWNQLLEVEHKYLHENKEEFLKLFSEKKFISLDDGWSRKIKDSKR 253
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 6e-52
Identities = 44/256 (17%), Positives = 86/256 (33%), Gaps = 13/256 (5%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
+ + ++ R +I V G VLD+GCG G A+ + +
Sbjct: 28 LHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRV 87
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYM 119
TGI++S Q+ A + AGL + + F D LP + +D + + + H+
Sbjct: 88 TGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPD--R 145
Query: 120 EEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRV--TSA 177
+L G + + + + GG + SLG + +
Sbjct: 146 GRALREMARVLRPGGTVAIADFVLLAPVEGAKK----EAVDAFRAGGGVLSLGGIDEYES 201
Query: 178 MTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAAS 237
+ L V +I +L + F +S++ + + F A
Sbjct: 202 DVRQAELVVTSTVDISAQARPSLVKTAEAFENARSQVEPF-MGAEGLDRMIATFRGLAEV 260
Query: 238 FKSRIIGDYQIVFSRP 253
++ + I +P
Sbjct: 261 PEAGYV---LIGARKP 273
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 2e-45
Identities = 46/264 (17%), Positives = 93/264 (35%), Gaps = 19/264 (7%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEK----ARVSKGQEVLDIGCGWGTLAIEIVKQT 56
+ + +++ +R L + + + + LD+G G+G A +V++
Sbjct: 45 IHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF 104
Query: 57 GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA-NKYDRIISCGMIEHVG 115
G + ++ Q K E +AGL D+I + ++P N YD I S H
Sbjct: 105 GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSP 164
Query: 116 HDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVT 175
+ F C +L G++ + D D+ + P + + SLG
Sbjct: 165 D--KLKVFQECARVLKPRGVMAITDPMKEDG-IDKSSIQP-ILDRIKLHD--MGSLGLYR 218
Query: 176 SAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALG---FNEKFIRTWEYYFD 232
S GL + + + + SEI + F R E++ +
Sbjct: 219 SLA-KECGLVTLRTFSRPDSLVHHYSKVKAELIKRSSEIASFCSPEFQANMKRGLEHWIE 277
Query: 233 YCAASFKSRIIGDYQIVFSRPGKV 256
++ + ++F + K+
Sbjct: 278 GG----RAGKLTWGGMLFRKSDKI 297
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 1e-29
Identities = 39/187 (20%), Positives = 64/187 (34%), Gaps = 15/187 (8%)
Query: 30 ARVSKGQEVLDIGCGWG--TLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIR 87
+ G V + CGW LA++ G + GI E L A L I
Sbjct: 114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQIT 173
Query: 88 FYLCDYRQLPKANKYDRIISCGMIEHVGHD-YMEEFFGCCESLLATHGLLVLQFISAP-- 144
+ D +L YD + S G+ + D + E + L G LV F++ P
Sbjct: 174 LHRQDAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPA 233
Query: 145 ---DQCYDEYRLSPG--FIKEYIFPGGCLPSLGRV-----TSAMTSSSGLCVEHLENIGI 194
D +D + P +++ +F P + T A +G E+
Sbjct: 234 LSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRA 293
Query: 195 HYYQTLR 201
+ T+
Sbjct: 294 RLFPTVI 300
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 7e-28
Identities = 35/228 (15%), Positives = 70/228 (30%), Gaps = 21/228 (9%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
++ C FK + ++ ++ DIGCG G + + +
Sbjct: 13 FSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQI 72
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA-NKYDRIISCGMIEHVGHDYM 119
TGI L + ++ +A D ++ LP + D I S G I ++G
Sbjct: 73 TGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIG---F 129
Query: 120 EEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMT 179
E L G + + + + ++ + + M
Sbjct: 130 ERGMNEWSKYLKKGGFIAVS-----EASWFTSERPAEIEDFWMDAYPEISVIPTCIDKM- 183
Query: 180 SSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTW 227
+G H+ CW +++ Q E+ E F++
Sbjct: 184 ERAGYTPTA------HFILPENCWTEHYFAPQDEVR-----ETFMKEH 220
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 2e-20
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 4/115 (3%)
Query: 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD 84
L +++ + DIGCG G + + + TG+ + R++GLQ+
Sbjct: 37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQN 96
Query: 85 HIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138
+ + LP + + D I S G I ++G E L G L +
Sbjct: 97 RVTGIVGSMDDLPFRNEELDLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAV 148
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 2e-20
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD 92
+ + VLD G G + I + G K GI +S+ QLK AE RE + + D
Sbjct: 22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFK--LNISKGD 79
Query: 93 YRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEY 151
R+LP K + S G I H+ + ++E + +L GL + F++ D+ Y++
Sbjct: 80 IRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKG 139
Query: 152 R 152
Sbjct: 140 E 140
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 2e-19
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH 85
+I + ++ G +DIG G G L+I + KQ+ + S+ + A + +A L D
Sbjct: 36 IINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDR 94
Query: 86 IRFYLCDYRQLP-KANKYDRIISCGMIEHVGH 116
I+ D +P + N D I+S G +
Sbjct: 95 IQIVQGDVHNIPIEDNYADLIVSRGSVFFWED 126
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 3e-18
Identities = 34/194 (17%), Positives = 78/194 (40%), Gaps = 21/194 (10%)
Query: 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREAGLQ 83
+ + ++ ++LD+G G G L+ ++++ +T + +SE+ L+ A+ + R
Sbjct: 35 SVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG---N 91
Query: 84 DHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143
+++ DY + KYD ++S I H+ + +E + S+L G+ + +
Sbjct: 92 LKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH 151
Query: 144 P---------DQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGI 194
+ +Y + G +E I G L + + L+ G
Sbjct: 152 GETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQ-----LNWLKEAG- 205
Query: 195 HYYQTLRCWRKNFM 208
++ + C K +
Sbjct: 206 --FRDVSCIYKYYQ 217
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 1e-17
Identities = 29/185 (15%), Positives = 53/185 (28%), Gaps = 15/185 (8%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH 85
++E VL+ G G G L +++ G GI S E A+ K L
Sbjct: 37 ILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEK-----LPKE 90
Query: 86 IRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145
D+ D I+S H+ D LL G +V D
Sbjct: 91 FSITEGDFLSFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFAD 150
Query: 146 -----QCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTL 200
+ + + + + + ++G V ++++ +
Sbjct: 151 QDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFE-NNGFHVTFTR---LNHFVWV 206
Query: 201 RCWRK 205
K
Sbjct: 207 MEATK 211
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 7e-17
Identities = 32/182 (17%), Positives = 62/182 (34%), Gaps = 15/182 (8%)
Query: 30 ARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFY 89
+ +VL++ G G + + T + S E + A GL D++ F
Sbjct: 42 RAGNIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEA----GRHGL-DNVEFR 95
Query: 90 LCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYD 149
D ++D + + HV D E F+ S +A G++ ++ ++ +
Sbjct: 96 QQDLFDWTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLE 155
Query: 150 EYRLSPG--FIKEYIFPGG------CLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLR 201
+ S ++ + G S +T +T + G E Y T R
Sbjct: 156 QQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLT-ALGWSCSVDEVHPGFLYATCR 214
Query: 202 CW 203
Sbjct: 215 PG 216
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 9e-17
Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 7/142 (4%)
Query: 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ 83
+++ A++ +VLD+GCG G ++ + G T +E + + + L
Sbjct: 110 GDVVDAAKIISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL- 167
Query: 84 DHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143
+I L D YD I+S + + + + + G ++ +
Sbjct: 168 -NISTALYDINAANIQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMS 226
Query: 144 PDQC----YDEYRLSPGFIKEY 161
D + + +KEY
Sbjct: 227 TDDVPCPLPFSFTFAENELKEY 248
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 2e-16
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 9/135 (6%)
Query: 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKY-TGITLSEEQLKYAEIKVREAGLQDHIRFYL 90
VS+G +LD+G L IE+V++ K + E + A V GL++ I+ L
Sbjct: 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRL 72
Query: 91 CD-YRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYD 149
+ + ++ I GM G + LA L+LQ + D
Sbjct: 73 ANGLAAFEETDQVSVITIAGM----GGRLIARILEEGLGKLANVERLILQPNNREDD-LR 127
Query: 150 EYRLSPGF--IKEYI 162
+ GF + E I
Sbjct: 128 IWLQDHGFQIVAESI 142
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 74.6 bits (183), Expect = 4e-16
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Query: 29 KARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRF 88
+ K +VLD+ CG G + + G + G+ +SE+ ++ A + + F
Sbjct: 33 MKYMKKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRESN--VEF 89
Query: 89 YLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145
+ D R+L + +D +I I H + + F +L G ++ F +
Sbjct: 90 IVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRE 147
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 4e-16
Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 5/138 (3%)
Query: 6 AIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITL 65
I++ E ++ ++ V + ++ + + VLD+ CG G +E+ ++ G + G+ L
Sbjct: 14 TIYRRRIERVK-AEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDL 71
Query: 66 SEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIIS-CGMIEHVGHDYMEEFFG 124
EE L+ A K +E L I F D ++ N++D + I + + + + F
Sbjct: 72 HEEMLRVARRKAKERNL--KIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFS 129
Query: 125 CCESLLATHGLLVLQFIS 142
L G+ + F
Sbjct: 130 KVAEALKPGGVFITDFPC 147
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 5e-16
Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 6/142 (4%)
Query: 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ 83
S ++E +V K + LD+GCG G ++ + G + + E L
Sbjct: 22 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENL- 79
Query: 84 DHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143
D++ + D L +YD I+S ++ + + + G ++
Sbjct: 80 DNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMD 139
Query: 144 PDQCYDE----YRLSPGFIKEY 161
+ G ++ Y
Sbjct: 140 TADYPCTVGFPFAFKEGELRRY 161
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 6e-16
Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 10/129 (7%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQD 84
++ + S + V+D+GCG G L ++K + + TG+ +S L+ A+ ++ L
Sbjct: 21 VVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPR 80
Query: 85 ----HIRFYLCDYRQLPKA-NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139
++ K + YD +IEH+ + F ++
Sbjct: 81 NQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQ-PKIV--- 136
Query: 140 FISAPDQCY 148
++ P+ Y
Sbjct: 137 IVTTPNIEY 145
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 74.6 bits (183), Expect = 6e-16
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGL 82
+L G +VL+ GCG G + + K + T I +S E L+ A + G+
Sbjct: 27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI 86
Query: 83 QDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGH 116
+++F + LP + + +D I C ++EH+
Sbjct: 87 -KNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQS 120
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 1e-15
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
Query: 23 VSVLIEK-ARVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVRE 79
VS L+ +++K ++D GCG+G L + ++ G KYTGI E L A R
Sbjct: 10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 69
Query: 80 AGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139
F D ++ +KYD I + H+ E + G ++
Sbjct: 70 LPYD--SEFLEGDATEIELNDKYDIAICHAFLLHMTT--PETMLQKMIHSVKKGGKIICF 125
Query: 140 F 140
Sbjct: 126 E 126
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 4e-15
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Query: 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKY-TGITLSEEQLKYAEIKVREAGLQDHIRFYL 90
++K + + DIG L VK + + + + A+ +VR +GL + I
Sbjct: 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRK 78
Query: 91 CD-YRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139
+ + K + D I+ GM G + + LA L+LQ
Sbjct: 79 GNGLAVIEKKDAIDTIVIAGM----GGTLIRTILEEGAAKLAGVTKLILQ 124
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 5e-15
Identities = 40/224 (17%), Positives = 80/224 (35%), Gaps = 31/224 (13%)
Query: 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIR 87
+ +L++G G +++ T + SEE + +A+ + L+D I
Sbjct: 36 AFTPFFRPGNLLELGSFKGDFT-SRLQEHFNDITCVEASEEAISHAQGR-----LKDGIT 89
Query: 88 FYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQC 147
+ + +YD I+ ++EH+ D + + LA G L F+ P+
Sbjct: 90 YIHSRFEDAQLPRRYDNIVLTHVLEHI-DDPVALLKRINDDWLAEGGRL---FLVCPNAN 145
Query: 148 YDEYRLSPGFIKEYIFPGGCLPSLGRVT------------SAMTSSSGLCVEHLENIGIH 195
++ +K I + S +GL V + GI
Sbjct: 146 AVSRQI---AVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS--GIF 200
Query: 196 YYQ-TLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASF 238
+ W + Q++IL+ + + + + Y D CA+ F
Sbjct: 201 FKALANFQWDQIL---QTDILSKEYLDGCYQLGQQYPDLCASIF 241
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 8e-15
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93
+ +EVLDIGC G L +K+ G + +GI E + A+ K+ DH+ +
Sbjct: 32 EWKEVLDIGCSSGALG-AAIKENGTRVSGIEAFPEAAEQAKEKL------DHVVLGDIET 84
Query: 94 RQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141
+P + ++D +I ++EH+ D + + +G+++
Sbjct: 85 MDMPYEEEQFDCVIFGDVLEHL-FDP-WAVIEKVKPYIKQNGVILASIP 131
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 1e-14
Identities = 28/137 (20%), Positives = 48/137 (35%), Gaps = 9/137 (6%)
Query: 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKV 77
G + A +G ++LD GCG G + + KQ G G L + YA+
Sbjct: 30 GNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDF 88
Query: 78 REAGLQDHIRFYLCDYRQLP-KANKYDRIISCG-MIEHVGHDYMEEFFGCCESLLATHGL 135
R+ + D +D I+S G ++ + D E L G
Sbjct: 89 ------PEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGR 142
Query: 136 LVLQFISAPDQCYDEYR 152
V+ F + + ++
Sbjct: 143 AVIGFGAGRGWVFGDFL 159
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 1e-14
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH- 85
I + + E+LDIGCG G +++E+ + G TGI ++ E ++ AE R GL
Sbjct: 23 IIHNYLQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKT 81
Query: 86 ---IRFYLCDYRQLP-KANKYDRIISCGMIEHVGH 116
F + + L + +D + + V
Sbjct: 82 GGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPD 116
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 2e-14
Identities = 26/167 (15%), Positives = 51/167 (30%), Gaps = 15/167 (8%)
Query: 14 DLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYA 73
D V + V + + + ++D CG GT + + + G+ +S+ L+ A
Sbjct: 36 DANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSALEIA 94
Query: 74 EIKVREAGLQDHIRFYLCDYRQLPKANKYD------RIISCGMIEHVGHDYMEEFFGCCE 127
+ +I + L D +A + I H+ + E
Sbjct: 95 ----AKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLR 150
Query: 128 SLLATHGLLVLQFISAPDQCYD----EYRLSPGFIKEYIFPGGCLPS 170
LL G + L + + E + + G P
Sbjct: 151 ILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPG 197
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 2e-14
Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQD- 84
+ + ++V+D+GCG G L ++K + TG+ +S L+ A+ +++ L +
Sbjct: 22 VAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEM 81
Query: 85 ---HIRFYLCDYRQLPK-ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140
I + K + YD +IEH+ + ++ F +
Sbjct: 82 QRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTV----I 137
Query: 141 ISAPDQCYDEY 151
+S P++ Y+ +
Sbjct: 138 VSTPNKEYNFH 148
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 3e-14
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 4/114 (3%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL--QDHIRFYLC 91
VL++ G G L + G + T + LS L ++ EA +D
Sbjct: 82 VSGPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQG 140
Query: 92 DYRQLPKANKYDRIIS-CGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144
D ++ ++ G I + + L G +L +
Sbjct: 141 DMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE 194
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 3e-14
Identities = 35/163 (21%), Positives = 58/163 (35%), Gaps = 13/163 (7%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93
+ + VLD+GCG G L + + G + G+ + A + AG +
Sbjct: 52 QPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAA--RAAGAGEVHLASYAQLAE 108
Query: 94 RQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF---ISAPDQCYDE 150
++P YD I + + H D E +LL G LV+Q S D Y +
Sbjct: 109 AKVPVGKDYDLICANFALLHQ--DI-IELLSAMRTLLVPGGALVIQTLHPWSVADGDYQD 165
Query: 151 YRLSPGFIKEYIFPGG---CLPSLGRVTSAMTSSSGLCVEHLE 190
F +L +A+ +GL + L+
Sbjct: 166 GWREESFAGFAGDWQPMPWYFRTLASWLNALD-MAGLRLVSLQ 207
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 4e-14
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 29 KARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRF 88
+V G+ + DIGCG GT + + + TG+ LSEE L+ A+ K E H+ F
Sbjct: 28 LEQVEPGKRIADIGCGTGTATLLLAD--HYEVTGVDLSEEMLEIAQEKAMETNR--HVDF 83
Query: 89 YLCDYRQLPKANKYDRIIS-CGMIEHVGHDY-MEEFFGCCESLLATHGLLVLQFIS 142
++ D R+L D I C + ++ + +++ F LL G L+ S
Sbjct: 84 WVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS 139
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 4e-14
Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 8/123 (6%)
Query: 30 ARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFY 89
+ G ++L++GCG G A ++ G S E A ++
Sbjct: 39 GELPAGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRLGRPVRTM----- 92
Query: 90 LCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYD 149
+ QL + YD + + + HV D + + L GL + S + D
Sbjct: 93 --LFHQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRD 150
Query: 150 EYR 152
+
Sbjct: 151 KLA 153
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 4e-14
Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
Query: 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKY-TGITLSEEQLKYAEIKVREAGLQDHIRFYL 90
V KG +LD+G L I +++ C + + + A V E GL I L
Sbjct: 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRL 78
Query: 91 CD-YRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139
+ +A+ D I CGM G + + L LVLQ
Sbjct: 79 ANGLSAFEEADNIDTITICGM----GGRLIADILNNDIDKLQHVKTLVLQ 124
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 6e-14
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 5/111 (4%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93
+ LD+ CG G L + + + LS+E L AE K R GL R D
Sbjct: 37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDI 93
Query: 94 RQLPKANKYDRIIS-CGMIEHVGH-DYMEEFFGCCESLLATHGLLVLQFIS 142
L K+D I ++ D ++++F + L G+ + S
Sbjct: 94 SNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 1e-13
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 5/121 (4%)
Query: 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVR 78
+ R +L L+IGC G ++ + T I + + A + +
Sbjct: 36 RERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTK 94
Query: 79 EAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGH-DYMEEFFGCCESLLATHGLLV 137
HI + D Q A +D I+ ++ ++ M +LA G LV
Sbjct: 95 RWS---HISWAATDILQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLV 151
Query: 138 L 138
Sbjct: 152 F 152
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-13
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 21/182 (11%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH 85
L++ G+ +LD+GCG G L +I + G + G + ++ A R+ H
Sbjct: 49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQS-GAEVLGTDNAATMIEKA----RQNY--PH 101
Query: 86 IRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145
+ F + D R D + S M+ V E L + G V +F +
Sbjct: 102 LHFDVADARNFRVDKPLDAVFSNAMLHWVKE--PEAAIASIHQALKSGGRFVAEFGGKGN 159
Query: 146 QC------YDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQT 199
Y+ + + P PS+G + + G V + + +
Sbjct: 160 IKYILEALYNALETLGIHNPQALNPWY-FPSIGEYVNILE-KQGFDVTYAA----LFNRP 213
Query: 200 LR 201
Sbjct: 214 TT 215
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 3e-13
Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Query: 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ 83
L E + LD G G G + ++ + + ++E+ L A+ + E G +
Sbjct: 69 RFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKR 128
Query: 84 DHIRFYLCDYRQL-PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ-FI 141
++ C + P+ + YD I +I H+ ++ EF C+ L +G++V++ +
Sbjct: 129 V-RNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM 187
Query: 142 SAPDQCYDEYRLS 154
+ D+ S
Sbjct: 188 AQEGVILDDVDSS 200
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 4e-13
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVRE 79
R + + V K EVLD+GCG G ++ + G K G+ +SE ++ +E
Sbjct: 39 SRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKG----KE 93
Query: 80 AGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHV 114
G + F D LP + +++ I++ +E
Sbjct: 94 RGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 5e-13
Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 8/133 (6%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH 85
LIE +LD+G G G + G + G+ + ++ A R+
Sbjct: 33 LIEPWATGVDGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELA----RQTH--PS 85
Query: 86 IRFYLCDYRQLPKA-NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144
+ F+ L + ++ +++ + H+G + + + G L++ F S P
Sbjct: 86 VTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGP 145
Query: 145 DQCYDEYRLSPGF 157
+ ++ +
Sbjct: 146 SLEPMYHPVATAY 158
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 1e-12
Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 3/142 (2%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH 85
L++ + + G+ L GCG G + + G+ +SE L A + ++
Sbjct: 59 LVDTSSLPLGR-ALVPGCGGGHDVVAMASP-ERFVVGLDISESALAKANETYGSSPKAEY 116
Query: 86 IRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHG-LLVLQFISAP 144
F D +D I + + + LL G L+ L +
Sbjct: 117 FSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITD 176
Query: 145 DQCYDEYRLSPGFIKEYIFPGG 166
Y++ +E + P G
Sbjct: 177 HVGGPPYKVDVSTFEEVLVPIG 198
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 2e-12
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL 82
+ ++I+ A VLDIG G G A+ + G+ ++E ++ A +E G+
Sbjct: 10 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV 68
Query: 83 QDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGH 116
+++RF LP + +D I H
Sbjct: 69 -ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSD 102
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 3e-12
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93
+ VLD+GCG+G I + K GI LSE L A + + +
Sbjct: 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEA----KRKTTSPVVCYEQKAI 99
Query: 94 RQLP-KANKYDRIISCGMIEHV 114
+ + + Y+ ++S + ++
Sbjct: 100 EDIAIEPDAYNVVLSSLALHYI 121
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 3e-12
Identities = 37/177 (20%), Positives = 60/177 (33%), Gaps = 27/177 (15%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93
G ++D+GCG+G + G+ LSE+ L A R AG I + D
Sbjct: 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARA----RAAGPDTGITYERADL 98
Query: 94 RQLPKA-NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ-------FISAPD 145
+L + +D S + +V + F L+ G V + P
Sbjct: 99 DKLHLPQDSFDLAYSSLALHYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPG 156
Query: 146 QCYDEYRLSPGFIKEYIFPGGCLP------------SLGRVTSAMTSSSGLCVEHLE 190
D I Y+ G ++G +A+ SG +EH+E
Sbjct: 157 WAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALI-RSGFAIEHVE 212
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 3e-12
Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 13/126 (10%)
Query: 3 YSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTG--CKY 60
+ + ++ Q + E +V G+++L+IGCG G L+ + Q G
Sbjct: 13 MALGPTANAR-TIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHV 71
Query: 61 TGITLSEEQ------LKYAEIKVREAGLQDHIRFYLCD---YRQLPKA-NKYDRIISCGM 110
TGI ++ L A + L D + + P A +DR++
Sbjct: 72 TGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHS 131
Query: 111 IEHVGH 116
+ +
Sbjct: 132 LWYFAS 137
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 3e-12
Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90
+ VLDIGCG G +E+ K+ G + G+ ++E+ +K+ E K + ++
Sbjct: 38 YFKGCRRVLDIGCGRGEF-LELCKEEGIESIGVDINEDMIKFCEGKF------NVVKSDA 90
Query: 91 CDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140
+Y + D ++ +EH+ + + E C S + +V++
Sbjct: 91 IEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIES 140
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 5e-12
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 4/112 (3%)
Query: 35 GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR 94
LD G G G + ++ + + + L+ A+ RE +F L
Sbjct: 94 TSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAK---RELAGMPVGKFILASME 150
Query: 95 QLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145
N YD I+ ++ +FF C+ L +G + + +
Sbjct: 151 TATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTG 202
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 8e-12
Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 12/143 (8%)
Query: 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC--KYTGITLSEEQLKYAEIKVREAGLQD 84
++ R S ++D GCG G+L ++ G+ +S + L A + ++
Sbjct: 714 LKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKE 773
Query: 85 HIRFYLCDYRQ------LPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138
+ + D +IEH+ D EF SL L
Sbjct: 774 ACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLL--- 830
Query: 139 QFISAPDQCYDEYRLSPGFIKEY 161
+S P+ ++ +
Sbjct: 831 -IVSTPNYEFNTILQRSTPETQE 852
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 1e-11
Identities = 23/149 (15%), Positives = 51/149 (34%), Gaps = 14/149 (9%)
Query: 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD 84
L+ A ++L + G G A + G + T + S L A+ +E G++
Sbjct: 20 FLVSVANQIPQGKILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGVK- 77
Query: 85 HIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143
I + A+ ++ I+S H+ ++ + L G+ +L+ +
Sbjct: 78 -ITTVQSNLADFDIVADAWEGIVSIFC--HLPSSLRQQLYPKVYQGLKPGGVFILEGFAP 134
Query: 144 PDQCYD-------EYRLSPGFIKEYIFPG 165
Y+ + ++ P
Sbjct: 135 EQLQYNTGGPKDLDLLPKLETLQSE-LPS 162
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-11
Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 9/125 (7%)
Query: 29 KARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRF 88
++R + +LD+ CG GT K+ G+ LSE+ L +A ++ +
Sbjct: 35 RSRTPEASSLLDVACGTGTHLEHFTKE-FGDTAGLELSEDMLTHARKRLPD------ATL 87
Query: 89 YLCDYRQLPKANKYDRIIS-CGMIEHVGH-DYMEEFFGCCESLLATHGLLVLQFISAPDQ 146
+ D R K+ ++S + ++ + + L G++V++ P+
Sbjct: 88 HQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPET 147
Query: 147 CYDEY 151
D +
Sbjct: 148 FADGW 152
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-11
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC--KYTGITLSEEQLKYAEIKVREAGLQ 83
++++ + +G VLD+G G G + K G K I + EE + YA KV + GL
Sbjct: 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL- 87
Query: 84 DHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGH 116
++ + ++P N D I +
Sbjct: 88 KNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSE 121
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 3e-11
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH 85
L++ A + +EVLD+ G G +A K L+E+ LK A + G
Sbjct: 29 LMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGH-QQ 86
Query: 86 IRFYLCDYRQLP-KANKYDRIISCGMIEHVGH 116
+ + D Q+P ++ + H +
Sbjct: 87 VEYVQGDAEQMPFTDERFHIVTCRIAAHHFPN 118
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 6e-11
Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 15/140 (10%)
Query: 29 KARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRF 88
+ K +LD+ CG G + G+ LS + L A + +
Sbjct: 45 RRHSPKAASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRNPD------AVL 97
Query: 89 YLCDYRQLPKANKYDRIIS-CGMIEHV-GHDYMEEFFGCCESLLATHGLLVLQFISAPDQ 146
+ D R ++ + I H+ G ++ + + G++V+ +
Sbjct: 98 HHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVV------EP 151
Query: 147 CYDEYRLSPGFIKEYIFPGG 166
+ +PG++ G
Sbjct: 152 WWFPENFTPGYVAAGTVEAG 171
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 59.4 bits (143), Expect = 2e-10
Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 8/144 (5%)
Query: 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ 83
+ LI +G VLD+GCG G ++ + +Y G+ ++E + A ++ R +
Sbjct: 55 ACLIRLY-TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR 113
Query: 84 DHIRFYLCDY--RQLPKANKYDRIISCGMIEHVGHDY--MEEFFGCCESLLATHGLLVLQ 139
+ F D R + ++D I S + ++ L G ++
Sbjct: 114 FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 173
Query: 140 FISAPDQCYDEYRLSPGFIKEYIF 163
P + R G + +
Sbjct: 174 V---PSRDVILERYKQGRMSNDFY 194
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 2e-10
Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 15/149 (10%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH 85
L+ R VLD+ CG G +I +V++ G T + S++ LKYA + +
Sbjct: 49 LLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPA 107
Query: 86 IRF-------YLCDYRQLPKANKYDRIIS-CGMIEHV-----GHDYMEEFFGCCESLLAT 132
+L + +P + +D +I H+ S++
Sbjct: 108 FDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP 167
Query: 133 HGLLVLQFISAPDQCYDEYRLSPGFIKEY 161
GLLV+ + D PG Y
Sbjct: 168 GGLLVIDHRN-YDYILSTGCAPPGKNIYY 195
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 3e-10
Identities = 27/160 (16%), Positives = 63/160 (39%), Gaps = 19/160 (11%)
Query: 10 SEHEDLEVGQMRKVSVLIEK-ARVSKGQEVLDIGCGWGTLAIEIVKQ-------TGCKYT 61
+EH+ ++ +K+ +I + ++L IG G G + ++I+ +
Sbjct: 27 TEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNE 86
Query: 62 GITLSEEQLKYAEIKVREAGLQDHIRF---------YLCDYRQLPKANKYDRIISCGMIE 112
+ S EQ+ + V + ++++F Y + + K+D I M+
Sbjct: 87 VVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLY 146
Query: 113 HVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYR 152
+V D + SLL T+ +++ +S ++
Sbjct: 147 YV-KD-IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWK 184
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 5e-10
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD 84
+L+E V K ++LD+GCG+G + I + + T ++ +K A+ ++ L +
Sbjct: 43 ILVENVVVDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDN 101
Query: 85 -HIRFYLCDYRQLPKANKYDRIISCGMIE----HVGHDYMEEFFGCCESLLATHGLLVL 138
IR D + K KY++II+ G + + + LL +G + +
Sbjct: 102 YDIRVVHSDLYENVKDRKYNKIIT-----NPPIRAGKEVLHRIIEEGKELLKDNGEIWV 155
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} Length = 261 | Back alignment and structure |
|---|
Score = 57.3 bits (137), Expect = 7e-10
Identities = 20/164 (12%), Positives = 44/164 (26%), Gaps = 26/164 (15%)
Query: 30 ARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKV-REAGLQDHIRF 88
+ G V IG L + +++ G T S+ + D +
Sbjct: 41 ENIVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADRCVTIDLLDI 99
Query: 89 YLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLL------------ 136
++L A +D +++ +I + SL+ + +
Sbjct: 100 TAEIPKEL--AGHFDFVLNDRLINRFTTEEARRACLGMLSLVGSGTVRASVKLGFYDIDL 157
Query: 137 ----------VLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPS 170
L P +R + + + P G +
Sbjct: 158 KLIEYGEQSGTLAKFFDPSDKTFHFREAGDVLDRALVPHGLIDK 201
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 2e-09
Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 18/142 (12%)
Query: 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYA-------EIKV 77
+ +G VLD+GCG G K G K G+ + + QL+ A K
Sbjct: 76 LPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKF 135
Query: 78 REAGLQDHIRFYLCDYRQLPKA-------NKYDRIISCGMIEHVGHDYMEEFFGCCESLL 130
+ + ++RF L A + D +IS + + F +L
Sbjct: 136 FGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTN--KLALFKEIHRVL 193
Query: 131 ATHGLLVLQFISAPDQCYDEYR 152
G L + A + + +
Sbjct: 194 RDGGELYFSDVYADRRLSEAAQ 215
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-09
Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Query: 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD 84
+++ A K +D+GCG G + +E+ + + I + E + E+ ++ GL D
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGD 82
Query: 85 HIRFYLCD-YRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142
++ D L K D + + G + ++E + L G +++ I
Sbjct: 83 NVTLMEGDAPEALCKIPDIDIAV----VGGSGGE-LQEILRIIKDKLKPGGRIIVTAIL 136
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 2e-09
Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 4/106 (3%)
Query: 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC 91
+ +L +GCG L+ E+ T + S + + +R+
Sbjct: 40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVP---QLRWETM 96
Query: 92 DYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLL 136
D R+L + +D ++ G ++ + + + E + +L
Sbjct: 97 DVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVL 142
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-09
Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 13/121 (10%)
Query: 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVR 78
+ + + K ++D GCG G +++ K I ++ LK + K
Sbjct: 2 SLERPEEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFD 60
Query: 79 EA-GLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137
L D N D I+ + D + + +L G ++
Sbjct: 61 SVITLSDPKEI---------PDNSVDFILFANSFHDM--DDKQHVISEVKRILKDDGRVI 109
Query: 138 L 138
+
Sbjct: 110 I 110
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 5e-09
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 9/123 (7%)
Query: 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKV 77
+ R L+ + + + D+GCG G + + G TGI ++ L+ A
Sbjct: 18 RTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKA---- 73
Query: 78 REAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137
+ + F D A K D + + + + V L + G+L
Sbjct: 74 ADRLP--NTNFGKADLATWKPAQKADLLYANAVFQWVPD--HLAVLSQLMDQLESGGVLA 129
Query: 138 LQF 140
+Q
Sbjct: 130 VQM 132
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 2e-08
Identities = 15/117 (12%), Positives = 38/117 (32%), Gaps = 8/117 (6%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTL-AIEIVKQTGCKYTGITLSEEQLKYAEIKVREAG 81
+ R +G+ + IG G L I + G + + + + + + + G
Sbjct: 111 LKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLG 170
Query: 82 LQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138
+ D + D + ++D ++ + E F + T ++
Sbjct: 171 V-DGVNVITGDETVIDGL-EFDVLMVAALAEP-----KRRVFRNIHRYVDTETRIIY 220
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 4e-08
Identities = 25/138 (18%), Positives = 43/138 (31%), Gaps = 16/138 (11%)
Query: 16 EVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEI 75
V + +S L + ++IG G G A+ + + G+ SE + A
Sbjct: 29 LVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARK 83
Query: 76 KVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHG 134
+ + LP K +D + I V D E +L G
Sbjct: 84 R--------GVFVLKGTAENLPLKDESFDFALMVTTICFV-DDP-ERALKEAYRILKKGG 133
Query: 135 LLVLQFISAPDQCYDEYR 152
L++ + EY
Sbjct: 134 YLIVGIVDRESFLGREYE 151
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 4e-08
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93
+ +++D+ G G + + + +T K G+ + E A+ V L+D I D
Sbjct: 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL 108
Query: 94 RQLP---KANKYDRIIS 107
+++ + D +
Sbjct: 109 KKITDLIPKERADIVTC 125
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 5e-08
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD 84
+ + L++G G G +A+ ++ + G +Y + L+ K+
Sbjct: 30 MASAVHPKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKIAGVDR-- 86
Query: 85 HIRFYLCDYRQLP-KANKYDRIISCGMIEHVGH 116
++ D R +P +I + V
Sbjct: 87 KVQVVQADARAIPLPDESVHGVIVVHLWHLVPD 119
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 6e-08
Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 15/171 (8%)
Query: 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80
R V+ +I + KG + DIG G G ++ + Q G + S + A +
Sbjct: 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQ-GLFVYAVEPSIVMRQQAVVH---- 75
Query: 81 GLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139
+ ++ L D +IS I H H +E+ F + ++ +++L
Sbjct: 76 ---PQVEWFTGYAENLALPDKSVDGVISILAIHHFSH--LEKSFQEMQRIIRDGTIVLLT 130
Query: 140 FISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLE 190
F Q Y P ++ + L + + ++ VE +
Sbjct: 131 FDIRLAQRIWLYDYFPFLWEDAL----RFLPLDEQINLLQENTKRRVEAIP 177
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 7e-08
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 25 VLIEKA----RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80
L+E A R + V DIG G G + + + K + +S + ++ A
Sbjct: 110 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH 169
Query: 81 GLQDHIRFYLCDYRQ--LPKANKYDRIIS 107
G+ D ++ + K + I+S
Sbjct: 170 GVSDRFFVRKGEFLEPFKEKFASIEMILS 198
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 8e-08
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 25 VLIEKARVSKGQEVLDIGCGWGTLAIE--IVKQTGCKYTGITLSEEQLKYAEIKVREAGL 82
L+ A G VLD G GT+A+E L E++L A +GL
Sbjct: 194 ALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL 253
Query: 83 QDHIRFYLCDYRQLPK-ANKYDRIIS 107
IRF D R LP+ + DRI++
Sbjct: 254 -SWIRFLRADARHLPRFFPEVDRILA 278
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 1e-07
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREAGLQ 83
+ K + G+ L+IG G + + ++ CK T + EE +YA +
Sbjct: 46 YIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSN 105
Query: 84 DHIRFYLCD-YRQLPKANKYDRIIS 107
+ + + + +D I S
Sbjct: 106 VRLVKSNGGIIKGVVE-GTFDVIFS 129
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 4e-07
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIE-IVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD 84
+IE A + G VLD CG GT+ IE +++ + GI + L AE+ AG+ D
Sbjct: 210 MIELAEL-DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLD 268
Query: 85 HIRFYLCDYRQLPK-ANKYDRIIS 107
I+F D QL + + D IS
Sbjct: 269 KIKFIQGDATQLSQYVDSVDFAIS 292
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 4e-07
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 1/93 (1%)
Query: 30 ARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFY 89
++ K V+D CG G I+ G + I + ++ A G+ D I F
Sbjct: 74 SQSFKCDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGIADKIEFI 132
Query: 90 LCDYRQLPKANKYDRIISCGMIEHVGHDYMEEF 122
D+ L K D + + E F
Sbjct: 133 CGDFLLLASFLKADVVFLSPPWGGPDYATAETF 165
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 5e-07
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 30 ARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFY 89
++ VL+ GCG G A Q ++ S E LK A A Y
Sbjct: 44 RLLTPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARANAPHAD------VY 96
Query: 90 LCDYR-QLP--KANKYDRIIS 107
+ + +LP + I+S
Sbjct: 97 EWNGKGELPAGLGAPFGLIVS 117
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 5e-07
Identities = 20/129 (15%), Positives = 47/129 (36%), Gaps = 12/129 (9%)
Query: 18 GQMRK---VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAE 74
GQ+ K ++ + +G+ + DIG G G++++E G + I ++++ +
Sbjct: 36 GQITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQ 94
Query: 75 IKVREAGLQDHIRFYLCD-YRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH 133
+ GL +R L + + +G + + LA
Sbjct: 95 KNIDTYGLSPRMRAVQGTAPAALADLPLPEAVF-------IGGGGSQALYDRLWEWLAPG 147
Query: 134 GLLVLQFIS 142
+V ++
Sbjct: 148 TRIVANAVT 156
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 7e-07
Identities = 18/75 (24%), Positives = 29/75 (38%)
Query: 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC 91
+ V+D+ G G L++ I K I K+ + ++D + Y
Sbjct: 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 182
Query: 92 DYRQLPKANKYDRII 106
D R P N DRI+
Sbjct: 183 DNRDFPGENIADRIL 197
|
| >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244 | Back alignment and structure |
|---|
Score = 48.0 bits (113), Expect = 8e-07
Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 13/156 (8%)
Query: 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT---GCKYTGITLSEEQLKYAEI 75
+ ++ + V+ V D+GC G + + K GI S+ ++
Sbjct: 43 NIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQ 102
Query: 76 KVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGL 135
+ + + D R + N +I ++ + + L +G+
Sbjct: 103 HIAAYHSEIPVEILCNDIRHVEIKN-ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGV 161
Query: 136 LVLQFISAPD---------QCYDEYRLSPGFIKEYI 162
LVL + + +++ + G+ + +
Sbjct: 162 LVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEV 197
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 8e-07
Identities = 16/122 (13%), Positives = 44/122 (36%), Gaps = 10/122 (8%)
Query: 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQ 83
++ + E++D+GCG G + + ++ + K + S + + + V +
Sbjct: 213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE 272
Query: 84 --DHIRFYLCDYRQLPKANKYDRIIS-----CGMIEHVGHDYMEEFFGCCESLLATHGLL 136
D F + + + +++ ++ + + E F L +G L
Sbjct: 273 ALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQH--ALTDNVAWEMFHHARRCLKINGEL 330
Query: 137 VL 138
+
Sbjct: 331 YI 332
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 8e-07
Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 9/115 (7%)
Query: 29 KARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRF 88
+G++VLD+G G+G L + + + G + G+ + + + L+
Sbjct: 228 GPEGVRGRQVLDLGAGYGALTLPL-ARMGAEVVGVEDDLASVLSLQKGLEANALKAQA-L 285
Query: 89 YLCDYRQLPKANKYDRIIS-----CGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138
+ L + ++D I++ G V D + F + L G+ L
Sbjct: 286 HSDVDEALTEEARFDIIVTNPPFHVGG--AVILDVAQAFVNVAAARLRPGGVFFL 338
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-06
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 29 KARVSKGQEVLDIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYAEIKVREAGLQDHI 86
K V +G V+D CG G + G + G + ++ + K+ + L D +
Sbjct: 17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRV 76
Query: 87 RFYLCDYRQLPK 98
++ + K
Sbjct: 77 TLIKDGHQNMDK 88
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 1e-06
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYAEIKVREA 80
S +I + + G ++L++G G G ++ I+ T + E+ LK A + E
Sbjct: 99 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF 158
Query: 81 GLQDHIRFYLCDYRQLPKANKYDRII 106
++R D YD +I
Sbjct: 159 YDIGNVRTSRSDIADFISDQMYDAVI 184
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-06
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 29 KARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRF 88
K + G+ +L++G G G + + G+ SE L + E +
Sbjct: 31 KGLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAPE------ATW 81
Query: 89 YLCDYRQLP-KANKYDRIISCGMIEHVGH 116
LP +D ++ +E V
Sbjct: 82 VRAWGEALPFPGESFDVVLLFTTLEFVED 110
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 3e-06
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY-TGITLSEEQLKYAEIKVREA 80
V+ +I++ +++ +D+G G G + +++ T CK+ G+ ++ KYAE RE
Sbjct: 162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREF 220
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-06
Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 29 KARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRF 88
+ + VLD+G G G ++ + ++ G + + S+E L+ A K +
Sbjct: 49 EEYLKNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGVK-------NV 100
Query: 89 YLCDYRQLP-KANKYDRIISCG 109
LP + ++ +++ G
Sbjct: 101 VEAKAEDLPFPSGAFEAVLALG 122
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 5e-06
Identities = 19/107 (17%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90
+VS V+D+ G G +I K I ++ ++ + ++ L+ I L
Sbjct: 192 KVSLNDVVVDMFAGVGPFSIACKN--AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPIL 249
Query: 91 CDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCES--LLATHGL 135
D R++ K +R+I + H ++++ E ++ + +
Sbjct: 250 SDVREVDV--KGNRVIM--NLPKFAHKFIDKALDIVEEGGVIHYYTI 292
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 6e-06
Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 2/108 (1%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKY-TGITLSEEQLKYAEIKVREAGLQDHIRFYLCD 92
+G++VLD+GC G L + I + G G+ + + A +R ++ +R
Sbjct: 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEE-LRLPPQT 104
Query: 93 YRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140
P A + + + G F
Sbjct: 105 LEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVF 152
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 9e-06
Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 21/154 (13%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQ 83
+I++ + + ++D+GCG GT +++ ++ + G LS +K AE+ +
Sbjct: 28 MIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT 87
Query: 84 -DHIRFYLCDYRQLP-------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGL 135
++ F + K D I + E+F + L G
Sbjct: 88 YKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDF---EKFQRSAYANLRKDGT 144
Query: 136 LVLQFISAP--------DQCYDEYRLSPGFIKEY 161
+ + + P D E + Y
Sbjct: 145 IAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPY 178
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 1e-05
Identities = 36/158 (22%), Positives = 54/158 (34%), Gaps = 20/158 (12%)
Query: 27 IEKARVS-KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH 85
I + K + VLD+GCG G L+ + G + + ++AE+ V+ L D
Sbjct: 150 ILQNHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDR 208
Query: 86 IRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145
I ++ + D IIS E +G+ E ES L L P
Sbjct: 209 IVVIPGKVEEVSLPEQVDIIIS----EPMGYMLFNE--RMLESYLHAKKYLKPSGNMFPT 262
Query: 146 QC------------YDEYRLSPGFIKEYIFPGGCLPSL 171
Y E F + F G L +L
Sbjct: 263 IGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSAL 300
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-05
Identities = 37/161 (22%), Positives = 54/161 (33%), Gaps = 20/161 (12%)
Query: 27 IEKARVS-KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH 85
I + K + VLD+GCG G L+ Q G + + ++AE+ V+ L D
Sbjct: 42 ILQNHTDFKDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDR 100
Query: 86 IRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145
I ++ + D IIS E +G+ E ES L L P
Sbjct: 101 IVVIPGKVEEVSLPEQVDIIIS----EPMGYMLFNE--RMLESYLHAKKYLKPSGNMFPT 154
Query: 146 QC------------YDEYRLSPGFIKEYIFPGGCLPSLGRV 174
Y E F + F G L +L
Sbjct: 155 IGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGA 195
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-05
Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGL 82
+V + K R+ + DIG G +++IE + + + + L + +++
Sbjct: 30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA 89
Query: 83 QDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142
++ L DR+ G +EE + L + G++VL ++
Sbjct: 90 RNVTLVEAFAPEGLDDLPDPDRVFIGG-----SGGMLEEIIDAVDRRLKSEGVIVLNAVT 144
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Length = 416 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 17/140 (12%)
Query: 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80
+ +++IGC G + + +++ G ++ G S A RE
Sbjct: 94 MLARDFLATELTGPDPFIVEIGCNDGIM-LRTIQEAGVRHLGFEPSSGVAAKA----REK 148
Query: 81 GLQDHIRFYLCDY--RQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138
G++ F+ + I + + H+ Y++ ++LLA G+ V
Sbjct: 149 GIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHI--PYVQSVLEGVDALLAPDGVFVF 206
Query: 139 QFISAP--------DQCYDE 150
+ DQ +DE
Sbjct: 207 EDPYLGDIVAKTSFDQIFDE 226
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-05
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 12/90 (13%)
Query: 30 ARVSKGQEVLDIGCGWGTLAIEI-VKQTGCKYTGITLSEEQLKYAEIKVREA---GLQDH 85
+ + D+G G G + + + + T S+E ++A +
Sbjct: 32 VADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSAR 91
Query: 86 IRFYLCDYRQLPKAN--------KYDRIIS 107
I D KA + +I
Sbjct: 92 IEVLEADVTLRAKARVEAGLPDEHFHHVIM 121
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 14/119 (11%), Positives = 38/119 (31%), Gaps = 17/119 (14%)
Query: 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS----EEQLKYAE 74
V V+ E ++ + V+D+ G GT ++++ ++ +T A
Sbjct: 164 SQPMVDVVSELGVFARARTVIDLAGGHGTYLAQVLR----RHPQLTGQIWDLPTTRDAAR 219
Query: 75 IKVREAGLQDHIRFYLCDYRQ--LPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLA 131
+ L + F+ + + D ++ + H + ++
Sbjct: 220 KTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVM----LNDCLHYFDAR---EAREVIG 271
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 5e-05
Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 22/165 (13%)
Query: 3 YSCAIFKSEHEDLEVGQMR----KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TG 57
S + ++ L+ G + + + + K VLDIGCG G
Sbjct: 50 DSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPE 109
Query: 58 CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGH 116
G+ +S+ +K A A + F + +LP D II
Sbjct: 110 ITTFGLDVSKVAIKAA------AKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCKA-- 161
Query: 117 DYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEY 161
EE ++ G ++ P + L + +
Sbjct: 162 ---EELA----RVVKPGGWVIT-ATPGPRHLMELKGLIYNEVHLH 198
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 5e-05
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWG-TLAI--EIVKQTGCKYTGITLSEEQLKYAEIKVRE 79
V ++ E + G +VL+IG G G A+ EIV + G + I E + AE +R+
Sbjct: 66 VGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVS-IERIPELAEKAERTLRK 124
Query: 80 AGLQDHIRFYLCD-YRQLPKANKYDRII 106
G D++ + D YDRI
Sbjct: 125 LGY-DNVIVIVGDGTLGYEPLAPYDRIY 151
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 Length = 433 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 6e-05
Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT-GITLSEEQLKYAEIKVR 78
+S + ++ ++ KG +D+G G G ++ + GC + G + ++ ++
Sbjct: 228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYE 287
Query: 79 EA 80
E
Sbjct: 288 EL 289
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 7e-05
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWG-TLAI--EIVKQTGCKYTGITLSEEQLKYAEIKVRE 79
+++ +E + KG VL+IG G G A+ +V + G + + S + + A+ V
Sbjct: 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVS-VEYSRKICEIAKRNVER 122
Query: 80 AGLQDHIRFYLCD-YRQLPKANKYDRII 106
G+ +++ F D Y +P+ + YD I
Sbjct: 123 LGI-ENVIFVCGDGYYGVPEFSPYDVIF 149
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 9e-05
Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 6/124 (4%)
Query: 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ 83
+ + + +G+ VLD+G G G LAI + G + + + +A V+ L
Sbjct: 53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMADHARALVKANNLD 111
Query: 84 DHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143
+ + K D IIS E +G+ + E + A L +
Sbjct: 112 HIVEVIEGSVEDISLPEKVDVIIS----EWMGYFLLRESM-FDSVISARDRWLKPTGVMY 166
Query: 144 PDQC 147
P
Sbjct: 167 PSHA 170
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 16/87 (18%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQ---LKYAEIKVREAG 81
+L+ +VLD+GCG G L++ + +TL + ++ + + G
Sbjct: 187 LLLSTLTPHTKGKVLDVGCGAGVLSVAFARH--SPKIRLTLCDVSAPAVEASRATLAANG 244
Query: 82 LQDHIRFYLCD-YRQLPKANKYDRIIS 107
++ + + + ++ ++D IIS
Sbjct: 245 VEG--EVFASNVFSEVK--GRFDMIIS 267
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 17/113 (15%)
Query: 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS----EEQLKYAEIKVREA 80
+E + +LDIG G A + V+ + ++ +QL+ +
Sbjct: 170 KALEIVFSHHPKRLLDIGGNTGKWATQCVQ----YNKEVEVTIVDLPQQLEMMRKQTAGL 225
Query: 81 GLQDHIRFYLCDY--RQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLA 131
+ I + + R +P +D + + + EE S+L
Sbjct: 226 SGSERIHGHGANLLDRDVPFPTGFDAVW----MSQFLDCFSEEE---VISILT 271
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 11/129 (8%)
Query: 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVR 78
+ +S + V+D G G + + Y + E+ L ++
Sbjct: 7 RPIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSKKVY-AFDVQEQALGKTSQRLS 65
Query: 79 EAGLQDHIRFYLCDYRQLPKA--NKYDRIISCGMIEHVGHDYM-------EEFFGCCESL 129
+ G+ ++ L + L I + E
Sbjct: 66 DLGI-ENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDR 124
Query: 130 LATHGLLVL 138
L G L +
Sbjct: 125 LEVGGRLAI 133
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 2e-04
Identities = 17/135 (12%), Positives = 37/135 (27%), Gaps = 21/135 (15%)
Query: 24 SVLIEKA------RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKV 77
++LI S ++VL I G G + + + +
Sbjct: 32 TLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERY 91
Query: 78 REAGLQDHIRFY--------------LCDYRQLPKANKYDRIISCGMIEHVGHDY-MEEF 122
+ ++Y + R++ K++ I I + H
Sbjct: 92 NKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATV 151
Query: 123 FGCCESLLATHGLLV 137
L A+ G ++
Sbjct: 152 MNNLSELTASGGKVL 166
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 2e-04
Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 25 VLIEKA---RVSKGQEVLDIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREA 80
L+E+A + +LD+G G G +A+ + + C+ + + + A+ +
Sbjct: 97 CLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL 156
Query: 81 GLQDHIRFYLCDYRQLPKANKYDRIIS 107
+ +I D+ ++ I+S
Sbjct: 157 AI-KNIHILQSDWFSALAGQQFAMIVS 182
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 3e-04
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC--KYTGITLSEEQLKYAEIKVREA 80
S + V +G ++D G G G + + + G K EE K AE + +
Sbjct: 101 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW 160
Query: 81 GLQDHIRFYLCDYRQLPKANKYDRII 106
GL + + + D + D +
Sbjct: 161 GLIERVTIKVRDISEGFDEKDVDALF 186
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 5e-04
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL 82
V++++E A + G +L++G G G A I + I E +++A+ + AG+
Sbjct: 80 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV 139
Query: 83 QDHIRFYLCD-YRQLPKANKYDRII 106
++ L D + P YD II
Sbjct: 140 -KNVHVILGDGSKGFPPKAPYDVII 163
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215 | Back alignment and structure |
|---|
Score = 39.4 bits (93), Expect = 5e-04
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 25 VLIEKA-----RVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVR 78
VL+E+A R+ G V+D+G G G +A+ I G T + LS + L A
Sbjct: 16 VLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAE 75
Query: 79 EAGLQDHIRFYLCD-----YRQLPKANKYDRIIS 107
G + + D + + + I+S
Sbjct: 76 RFGAV--VDWAAADGIEWLIERAERGRPWHAIVS 107
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 6e-04
Identities = 29/130 (22%), Positives = 43/130 (33%), Gaps = 11/130 (8%)
Query: 18 GQMRKVSV---LIEKARVSKGQEVLDIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYA 73
GQ+ K V I + + DIG G G++AIE ++ T +SEE+ +
Sbjct: 6 GQLTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERI 65
Query: 74 EIKVREAGLQDHIRFYLCDYRQLPKA-NKYDRIISCGMIEHVGHDYMEEFFGCCESLLAT 132
G+ D I R + D I I F L
Sbjct: 66 LSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIF----IGGGLT--APGVFAAAWKRLPV 119
Query: 133 HGLLVLQFIS 142
G LV ++
Sbjct: 120 GGRLVANAVT 129
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 39.8 bits (92), Expect = 7e-04
Identities = 39/270 (14%), Positives = 77/270 (28%), Gaps = 71/270 (26%)
Query: 14 DLEVGQMRKVSVLIEKA-RVSKGQEVL---DIGCGWGTLAIEIVKQTG--CKYTG----I 63
V +++ L + + + VL +G G +A+++ CK +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 64 TLSE--------EQLK----------------YAEIKVREAGLQDHIRFYLCDYRQLPKA 99
L E L+ + IK+R +Q +R L +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENC 246
Query: 100 -----NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCY-DEYRL 153
N + + F C+ LL T V F+SA +
Sbjct: 247 LLVLLNVQNA-------KAW-----NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 154 SPGFIKEY---IF------PGGCLPSLGRVTSAMTSSSGLCVEHLENIGIH--YYQTLRC 202
S + + LP T+ S + E + + ++ + C
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--IIAESIRDGLATWDNWKHVNC 352
Query: 203 WRKNFMGKQSEILALGFNEKFIRTWEYYFD 232
+ + + S + L E R + +
Sbjct: 353 DKLTTIIESS-LNVLEPAE--YR--KMFDR 377
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 272 | |||
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 100.0 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 100.0 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 100.0 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 100.0 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.98 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.96 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.95 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.93 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.93 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.92 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.91 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.91 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.9 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.9 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.89 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.88 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.88 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.86 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.86 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.85 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.85 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.85 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.85 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.85 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.85 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.85 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.84 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.84 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.84 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.84 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.84 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.84 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.84 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.84 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.83 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.83 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.83 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.83 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.83 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.82 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.82 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.82 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.82 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.82 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.82 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.82 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.82 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.81 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.81 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.81 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.81 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.81 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.8 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.8 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.8 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.8 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.8 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.79 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.79 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.79 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.79 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.79 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.79 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.78 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.78 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.78 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.78 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.78 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.78 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.78 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.77 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.77 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.77 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.77 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.77 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.77 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.77 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.77 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.77 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.76 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.76 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.76 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.76 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.76 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.76 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.75 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.75 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.75 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.75 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.75 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.75 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.75 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.74 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.74 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.74 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.74 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.74 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.73 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.73 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.72 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.72 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.72 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.72 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.71 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.71 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.71 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.71 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.71 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.71 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.71 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.7 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.7 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.7 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.7 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.7 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.7 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.7 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.69 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.69 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.69 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.69 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.69 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.69 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.68 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.68 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.68 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.68 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.68 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.68 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.68 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.68 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.67 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.67 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.67 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.67 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.67 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.67 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.66 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.66 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.66 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.66 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.66 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.66 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.65 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.65 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.65 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.65 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.65 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.65 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.65 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.65 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.65 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.64 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.64 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.64 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.64 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.64 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.64 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.64 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.64 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.64 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.64 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.64 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.64 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.63 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.63 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.63 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.63 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.62 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.61 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.61 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.61 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.61 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.61 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.61 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.61 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.61 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.61 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.61 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.6 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.6 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.6 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.6 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.6 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.6 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.6 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.59 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.59 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.59 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.59 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.58 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.58 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.57 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.57 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.56 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.55 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.55 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.55 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.54 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.54 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.53 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.53 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.52 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.52 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.52 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.52 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.51 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.51 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.51 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.5 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.5 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.5 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.49 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.49 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.49 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.48 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.48 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.48 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.47 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.47 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.47 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.47 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.47 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.46 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.46 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.46 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.46 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.46 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.46 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.45 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.45 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.45 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.45 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.44 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.44 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.44 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.44 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.43 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.43 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.43 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.42 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.42 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.42 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.41 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.41 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.37 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.36 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.35 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.35 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.35 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.35 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.33 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.33 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.31 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.3 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.29 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.29 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.26 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.25 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.24 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.23 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.22 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.19 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.18 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 99.16 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 99.15 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.14 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.11 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.09 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 99.08 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.07 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.06 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.04 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.01 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 99.01 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.01 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.96 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.95 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.94 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.9 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.9 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.89 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.82 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.77 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.69 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.63 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.62 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.61 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.53 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.47 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.47 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.45 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.39 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.38 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.29 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.26 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.2 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.14 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.95 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.83 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.82 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.77 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.6 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.52 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.34 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 97.32 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.29 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 97.25 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 97.1 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 97.08 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 97.05 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 97.03 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 97.0 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.99 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.97 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 96.97 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.96 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.86 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.85 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.8 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.74 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.72 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.68 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.65 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.63 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.59 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.58 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 96.57 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.55 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.5 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.44 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.39 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 96.39 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 96.39 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.38 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 96.34 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.34 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.33 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.33 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.3 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 96.28 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.23 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 96.21 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.2 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 96.2 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.19 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 96.18 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.16 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.16 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 96.12 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.06 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 96.05 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 95.99 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 95.98 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.98 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.97 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 95.96 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.95 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.94 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 95.9 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 95.89 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 95.77 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.77 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 95.72 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 95.63 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 95.56 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 95.52 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 95.24 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 95.2 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 95.12 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 95.12 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 95.07 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.98 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 94.97 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 94.85 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 94.79 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 94.73 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.71 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 94.69 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 94.68 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.63 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.59 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 94.56 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 94.49 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 94.43 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.26 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 94.25 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 94.24 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 94.22 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 94.19 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.17 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 94.13 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 93.93 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 93.72 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 93.17 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 92.96 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 92.93 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 92.59 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 92.58 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 92.46 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 92.36 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 92.13 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 91.97 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 91.88 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 91.34 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 91.28 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 90.92 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 90.9 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 90.73 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 90.72 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 90.56 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 90.46 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 90.33 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 90.31 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 90.19 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 90.05 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 90.03 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 89.83 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 89.69 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 89.53 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 89.33 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 89.3 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 89.19 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 89.13 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 88.85 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 88.76 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 88.7 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 88.31 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 88.19 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 88.14 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 87.98 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 87.84 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 87.71 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 87.56 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 87.39 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 87.04 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 86.99 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 86.85 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 86.29 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 86.21 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 85.71 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 85.66 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 85.35 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 85.09 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 84.9 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 84.89 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 84.82 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 84.68 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 84.67 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 84.54 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 84.47 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 84.37 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 84.35 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 84.35 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 84.26 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 84.26 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 83.94 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 83.68 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 83.67 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 83.58 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 83.41 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 83.38 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 83.16 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 82.97 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 82.95 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 82.49 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 82.11 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 82.1 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 81.6 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 81.59 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 81.42 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 81.29 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 81.09 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 81.08 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 81.08 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 80.96 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 80.66 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 80.61 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 80.57 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 80.54 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 80.43 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 80.43 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 80.26 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 80.25 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 80.07 |
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=298.24 Aligned_cols=248 Identities=29% Similarity=0.484 Sum_probs=224.9
Q ss_pred CcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 024096 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272)
Q Consensus 1 ~~y~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272)
|+|+|++|..++.+++++|...++.+++.+.+.++.+|||||||+|.++..+++..+++|+|+|+|+.+++.+++++...
T Consensus 39 ~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~ 118 (302)
T 3hem_A 39 MTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEV 118 (302)
T ss_dssp CCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHS
T ss_pred CceeeEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999999999985689999999999999999999999
Q ss_pred CCCCCeEEEEcccCCCCCCCCccEEEEechhhcc-------ChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccC
Q 024096 81 GLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHV-------GHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRL 153 (272)
Q Consensus 81 g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~-------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 153 (272)
++++++++.++|+.++ +++||+|++..+++|+ +.++...+++++.++|||||++++.++..+.........
T Consensus 119 ~~~~~v~~~~~d~~~~--~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 196 (302)
T 3hem_A 119 DSPRRKEVRIQGWEEF--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELG 196 (302)
T ss_dssp CCSSCEEEEECCGGGC--CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHT
T ss_pred CCCCceEEEECCHHHc--CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhcc
Confidence 9888999999999887 5899999999999999 446778999999999999999999988866543221111
Q ss_pred c---------chhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHH
Q 024096 154 S---------PGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFI 224 (272)
Q Consensus 154 ~---------~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 224 (272)
. ..++..+++|++.+++.+++.+.+ +++||+++.+++++.+|..++..|.+++.++.+++... +++++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~l-~~aGf~~~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~-~~~~~~ 274 (302)
T 3hem_A 197 LTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYS-SNAGWKVERYHRIGANYVPTLNAWADALQAHKDEAIAL-KGQETC 274 (302)
T ss_dssp CCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHH-HHHTCEEEEEEECGGGHHHHHHHHHHHHHHTHHHHHHH-HCHHHH
T ss_pred ccccccccchHHHHHHhcCCCCCCCCHHHHHHHH-HhCCcEEEEEEeCchhHHHHHHHHHHHHHHhHHHHHHH-hCHHHH
Confidence 1 267888999999999999988654 56999999999999999999999999999999999887 899999
Q ss_pred HHHHHHHHHHHHHHhcCCccEEEEEEEe
Q 024096 225 RTWEYYFDYCAASFKSRIIGDYQIVFSR 252 (272)
Q Consensus 225 ~~w~~~~~~~~~~f~~g~~~~~~~~~~k 252 (272)
++|++|+.+|+++|+.|.++.+||+++|
T Consensus 275 ~~w~~yl~~~~~~f~~~~~~~~q~~~~~ 302 (302)
T 3hem_A 275 DIYMHYLRGCSDLFRDKYTDVCQFTLVK 302 (302)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEC
Confidence 9999999999999999999999999987
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-40 Score=280.35 Aligned_cols=248 Identities=29% Similarity=0.520 Sum_probs=220.5
Q ss_pred CcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 024096 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272)
Q Consensus 1 ~~y~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272)
|.|++++|..+..++.++|...++.+++.+++.++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.+++++...
T Consensus 31 ~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 110 (287)
T 1kpg_A 31 QTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANS 110 (287)
T ss_dssp CCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTC
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc
Confidence 67999999999999999999999999999999999999999999999999999665779999999999999999999988
Q ss_pred CCCCCeEEEEcccCCCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccc---------cc
Q 024096 81 GLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYD---------EY 151 (272)
Q Consensus 81 g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---------~~ 151 (272)
++.+++.+.++|+.+++ ++||+|++..+++|+++++...+++++.++|||||++++.++..+..... ..
T Consensus 111 ~~~~~~~~~~~d~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 188 (287)
T 1kpg_A 111 ENLRSKRVLLAGWEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTF 188 (287)
T ss_dssp CCCSCEEEEESCGGGCC--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHH
T ss_pred CCCCCeEEEECChhhCC--CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccc
Confidence 88779999999998876 88999999999999987778999999999999999999988875543210 00
Q ss_pred cCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHH
Q 024096 152 RLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYF 231 (272)
Q Consensus 152 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~ 231 (272)
.....++..+++|++.+++.+++.+ +++++||+++++.+++.+|..++..|..++.++++++... +++.+.+.|..|+
T Consensus 189 ~~~~~~~~~~~~~~~~~~s~~~~~~-~l~~aGf~~~~~~~~~~~y~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~l 266 (287)
T 1kpg_A 189 ARFLKFIVTEIFPGGRLPSIPMVQE-CASANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQAIAL-QSEEVYERYMKYL 266 (287)
T ss_dssp HHHHHHHHHHTSTTCCCCCHHHHHH-HHHTTTCEEEEEEECHHHHHHHHHHHHHHHHHTHHHHHHH-SCHHHHHHHHHHH
T ss_pred cchhhhHHheeCCCCCCCCHHHHHH-HHHhCCcEEEEEEeCcHhHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHH
Confidence 1233456778899999999999985 4556999999999999999999999999999999998876 5677778899999
Q ss_pred HHHHHHHhcCCccEEEEEEEe
Q 024096 232 DYCAASFKSRIIGDYQIVFSR 252 (272)
Q Consensus 232 ~~~~~~f~~g~~~~~~~~~~k 252 (272)
..|+++|+.|.++++||+++|
T Consensus 267 ~~~~~~f~~g~~~~~~~~~~k 287 (287)
T 1kpg_A 267 TGCAEMFRIGYIDVNQFTCQK 287 (287)
T ss_dssp HHHHHHHHTTSEEEEEEEEEC
T ss_pred HHHHHHHhCCCCeEEEEEEEC
Confidence 999999999999999999987
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=272.70 Aligned_cols=251 Identities=27% Similarity=0.466 Sum_probs=223.5
Q ss_pred CcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 024096 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272)
Q Consensus 1 ~~y~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272)
|.|++++|..+..++.++|...++.+++.+++.++.+|||+|||+|.++..+++..+++|+|+|+|+.+++.++++....
T Consensus 57 ~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~ 136 (318)
T 2fk8_A 57 RTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASI 136 (318)
T ss_dssp CCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTS
T ss_pred CCcceeeeCCCCCCHHHHHHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999999999999999999875789999999999999999999988
Q ss_pred CCCCCeEEEEcccCCCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccc---------
Q 024096 81 GLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEY--------- 151 (272)
Q Consensus 81 g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--------- 151 (272)
++.+++.+.++|+.+++ ++||+|++..+++|++++++..+++++.++|||||++++.++..+.......
T Consensus 137 ~~~~~v~~~~~d~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 214 (318)
T 2fk8_A 137 DTNRSRQVLLQGWEDFA--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFET 214 (318)
T ss_dssp CCSSCEEEEESCGGGCC--CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHH
T ss_pred CCCCceEEEECChHHCC--CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccc
Confidence 88778999999998886 7899999999999998878899999999999999999999887655321100
Q ss_pred cCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHH
Q 024096 152 RLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYF 231 (272)
Q Consensus 152 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~ 231 (272)
.....++..+++|++.+++.+++.+.+ +++||+++++.+++.+|..++..|..++...++++... +++.+.++|..|+
T Consensus 215 ~~~~~~~~~~~~~~~~~~s~~~~~~~l-~~aGf~~~~~~~~~~~y~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~l 292 (318)
T 2fk8_A 215 ARFIKFIVTEIFPGGRLPSTEMMVEHG-EKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEV-TSEEVYNRYMKYL 292 (318)
T ss_dssp HHHHHHHHHHTSTTCCCCCHHHHHHHH-HHTTCBCCCCEECHHHHHHHHHHHHHHHHHTHHHHHHH-SCHHHHHHHHHHH
T ss_pred cchhhHHHHhcCCCCcCCCHHHHHHHH-HhCCCEEEEEEecchhHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHH
Confidence 012256677888989999999998554 56999999999999999999999999999999888776 5899999999999
Q ss_pred HHHHHHHhcCCccEEEEEEEeCCC
Q 024096 232 DYCAASFKSRIIGDYQIVFSRPGK 255 (272)
Q Consensus 232 ~~~~~~f~~g~~~~~~~~~~k~~~ 255 (272)
..|+++|+.|.++++|++++||+.
T Consensus 293 ~~~~~~f~~g~~~~~~~~~~k~~~ 316 (318)
T 2fk8_A 293 RGCEHYFTDEMLDCSLVTYLKPGA 316 (318)
T ss_dssp HHHHHHHHTTSCEEEEEEEECTTC
T ss_pred HHHHHHHHCCCCeEEEEEEEeCCC
Confidence 999999999999999999999864
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-32 Score=229.21 Aligned_cols=243 Identities=16% Similarity=0.189 Sum_probs=197.6
Q ss_pred ccccccCCCC--CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 024096 3 YSCAIFKSEH--EDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272)
Q Consensus 3 y~~~~~~~~~--~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272)
+.++||.... .++.+++....+.+++.+++.++.+|||+|||+|.++..+++..+.+++|+|+|+.+++.+++++...
T Consensus 28 ~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 107 (273)
T 3bus_A 28 LHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAA 107 (273)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHT
T ss_pred ceEEecCCCccccCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 4678998766 69999999999999999999999999999999999999999876789999999999999999999998
Q ss_pred CCCCCeEEEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhh
Q 024096 81 GLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIK 159 (272)
Q Consensus 81 g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 159 (272)
++++++.++++|+.+++ ++++||+|++..+++|++ +...+++++.++|||||++++.++................+.
T Consensus 108 ~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~ 185 (273)
T 3bus_A 108 GLANRVTFSYADAMDLPFEDASFDAVWALESLHHMP--DRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFR 185 (273)
T ss_dssp TCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSS--CHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred CCCcceEEEECccccCCCCCCCccEEEEechhhhCC--CHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHH
Confidence 88788999999999988 568999999999999995 458999999999999999999887654322111110011111
Q ss_pred hcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHHHHHHHHHh
Q 024096 160 EYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFK 239 (272)
Q Consensus 160 ~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~f~ 239 (272)
..++...+++.+++.+ +++++||+++.+++++.++..++..|.+++.+....+... +++...+.|.. .+...+.
T Consensus 186 -~~~~~~~~~~~~~~~~-~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~ 259 (273)
T 3bus_A 186 -AGGGVLSLGGIDEYES-DVRQAELVVTSTVDISAQARPSLVKTAEAFENARSQVEPF-MGAEGLDRMIA---TFRGLAE 259 (273)
T ss_dssp -HHHTCCCCCCHHHHHH-HHHHTTCEEEEEEECHHHHTTHHHHHHHHHHHTHHHHHHH-HCHHHHHHHHH---HHHHHHT
T ss_pred -hhcCccCCCCHHHHHH-HHHHcCCeEEEEEECcHhHHHHHHHHHHHHHHhHHHHHhh-cCHHHHHHHHH---HHHHHhh
Confidence 2234567788888875 4556999999999999999889999999998877766543 56655555443 3334578
Q ss_pred cCCccEEEEEEEeC
Q 024096 240 SRIIGDYQIVFSRP 253 (272)
Q Consensus 240 ~g~~~~~~~~~~k~ 253 (272)
.+.+++++++++||
T Consensus 260 ~~~~~~~~~~~~kp 273 (273)
T 3bus_A 260 VPEAGYVLIGARKP 273 (273)
T ss_dssp CTTEEEEEEEEECC
T ss_pred CCCeeEEEEEEECC
Confidence 89999999999997
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.98 E-value=7.2e-30 Score=218.72 Aligned_cols=245 Identities=18% Similarity=0.226 Sum_probs=195.1
Q ss_pred ccccccCCC--CCCHHHHHHHHHHHHHHHc----CCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHH
Q 024096 3 YSCAIFKSE--HEDLEVGQMRKVSVLIEKA----RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIK 76 (272)
Q Consensus 3 y~~~~~~~~--~~~l~~aq~~~~~~l~~~l----~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~ 76 (272)
+.+++|... +..+.+++...++.+++.+ .+.++.+|||+|||+|.++..+++..+.+++|+|+|+.+++.++++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~ 124 (297)
T 2o57_A 45 IHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEY 124 (297)
T ss_dssp CCSCCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH
T ss_pred eEEEecCCCCCCcchHHHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHH
Confidence 346889887 8899999999999999999 8889999999999999999999987677999999999999999999
Q ss_pred HHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcc
Q 024096 77 VREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSP 155 (272)
Q Consensus 77 ~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 155 (272)
....++.++++++++|+.+++ ++++||+|++..+++|+++ +..+++++.++|||||++++.++..+...... ...
T Consensus 125 ~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~ 200 (297)
T 2o57_A 125 NNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKS--SIQ 200 (297)
T ss_dssp HHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG--GGH
T ss_pred HHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchH--HHH
Confidence 998888789999999999988 6789999999999999954 68999999999999999999887754432111 112
Q ss_pred hhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHHHHHH
Q 024096 156 GFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCA 235 (272)
Q Consensus 156 ~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~ 235 (272)
.+...+..+ .+.+..++.+ +++++||+++++.+++.............+.....++.. .++..+.+.|...+..+.
T Consensus 201 ~~~~~~~~~--~~~~~~~~~~-~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 276 (297)
T 2o57_A 201 PILDRIKLH--DMGSLGLYRS-LAKECGLVTLRTFSRPDSLVHHYSKVKAELIKRSSEIAS-FCSPEFQANMKRGLEHWI 276 (297)
T ss_dssp HHHHHHTCS--SCCCHHHHHH-HHHHTTEEEEEEEECHHHHHHHHHHHHHHHHHTHHHHTT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC--CCCCHHHHHH-HHHHCCCeEEEEEECchhhHHHHHHHHHHHHHhHHHHhc-cCCHHHHHHHHHHHHHHH
Confidence 223333222 3567777764 455699999999887643322222222233333344433 478899999999999999
Q ss_pred HHHhcCCccEEEEEEEeCCC
Q 024096 236 ASFKSRIIGDYQIVFSRPGK 255 (272)
Q Consensus 236 ~~f~~g~~~~~~~~~~k~~~ 255 (272)
..++.|.+++.+++++||..
T Consensus 277 ~~~~~g~~~~~~~~a~Kp~~ 296 (297)
T 2o57_A 277 EGGRAGKLTWGGMLFRKSDK 296 (297)
T ss_dssp HHHHTTSEEEEEEEEEESSC
T ss_pred HhccCCeEEEEEEEEECCCC
Confidence 99999999999999999864
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-28 Score=201.84 Aligned_cols=221 Identities=19% Similarity=0.234 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
.......+++.+.+.++.+|||+|||+|.++..+++..+.+|+|+|+|+.+++.++++.... .+++++++|+.+++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~ 116 (266)
T 3ujc_A 40 GLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEF 116 (266)
T ss_dssp HHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCC
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCC
Confidence 34456778888888899999999999999999999876789999999999999999876543 48999999999988
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccC-CCCCCCHHHHHH
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFP-GGCLPSLGRVTS 176 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~ 176 (272)
++++||+|++..+++|++.+++..+++++.++|||||++++.++..+... .....+..+..+ +..+++.+++.+
T Consensus 117 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (266)
T 3ujc_A 117 PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKE-----NWDDEFKEYVKQRKYTLITVEEYAD 191 (266)
T ss_dssp CTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGG-----GCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcc-----cchHHHHHHHhcCCCCCCCHHHHHH
Confidence 67899999999999999888889999999999999999999887655411 111122222222 234677888875
Q ss_pred HhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHH----HHHHHHHHHHHHhcCCccEEEEEEEe
Q 024096 177 AMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRT----WEYYFDYCAASFKSRIIGDYQIVFSR 252 (272)
Q Consensus 177 ~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----w~~~~~~~~~~f~~g~~~~~~~~~~k 252 (272)
+++++||+++++.+++.+|..++..|.+++....+++... +++...+. |..++..|. .|.+++..++++|
T Consensus 192 -~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~g~~~w~~~~~~K 265 (266)
T 3ujc_A 192 -ILTACNFKNVVSKDLSDYWNQLLEVEHKYLHENKEEFLKL-FSEKKFISLDDGWSRKIKDSK----RKMQRWGYFKATK 265 (266)
T ss_dssp -HHHHTTCEEEEEEECHHHHHHHHHHHHHHHHHTHHHHHHH-SCHHHHHHHHHHHHHHHHHHH----TTSEEEEEEEEEC
T ss_pred -HHHHcCCeEEEEEeCCHHHHHHHHHHHHHHHhCHHHHHHh-cCHHHHHHHHHHHHHHHHHHH----cCcccceEEEEeC
Confidence 4556999999999999999999999999999888887765 55554444 777776554 5789999999999
Q ss_pred C
Q 024096 253 P 253 (272)
Q Consensus 253 ~ 253 (272)
|
T Consensus 266 p 266 (266)
T 3ujc_A 266 N 266 (266)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-27 Score=201.89 Aligned_cols=222 Identities=18% Similarity=0.250 Sum_probs=172.8
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 024096 2 TYSCAIFKSEHEDLEVGQMRKVSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272)
Q Consensus 2 ~y~~~~~~~~~~~l~~aq~~~~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272)
.|+.++|.. ....+....+.+++.+. +.++.+|||+|||+|.++..+++..+++|+|+|+++.+++.+++++...
T Consensus 88 ~y~~~~f~~----~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~ 163 (312)
T 3vc1_A 88 EYEKKVIAE----LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRAREL 163 (312)
T ss_dssp THHHHHHHH----HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT
T ss_pred ccchHHHhh----hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 455555543 22333444467888887 8899999999999999999999876789999999999999999999999
Q ss_pred CCCCCeEEEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhh
Q 024096 81 GLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIK 159 (272)
Q Consensus 81 g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 159 (272)
++.++++++++|+.+++ ++++||+|++..+++|++ ...+++++.++|||||++++.++...... ........++.
T Consensus 164 ~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~~~ 239 (312)
T 3vc1_A 164 RIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRY-GQPSKWVSQIN 239 (312)
T ss_dssp TCTTTEEEEECCTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTT-CSCCHHHHHHH
T ss_pred CCCCceEEEECChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccc-cchhHHHHHHH
Confidence 98889999999999988 668999999999999993 68999999999999999999887654422 11112223333
Q ss_pred hcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHHHHHHHHHh
Q 024096 160 EYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFK 239 (272)
Q Consensus 160 ~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~f~ 239 (272)
....+ .+++.+++.+ +++++||+++.+++++. .+++.|..++... ...|+.+.|.+ .|+
T Consensus 240 ~~~~~--~~~s~~~~~~-~l~~aGf~~~~~~~~~~---~~~~~w~~~~~~~----~~~g~~~~~~~-----------~~~ 298 (312)
T 3vc1_A 240 AHFEC--NIHSRREYLR-AMADNRLVPHTIVDLTP---DTLPYWELRATSS----LVTGIEKAFIE-----------SYR 298 (312)
T ss_dssp HHHTC--CCCBHHHHHH-HHHTTTEEEEEEEECHH---HHHHHHHHHTTST----TCCSCHHHHHH-----------HHH
T ss_pred hhhcC--CCCCHHHHHH-HHHHCCCEEEEEEeCCH---HHHHHHHHHHHHh----hhhcChHHHHH-----------HHH
Confidence 33333 3667888875 45579999999999873 6788999887744 24567666655 556
Q ss_pred cCCccEEEEEEEe
Q 024096 240 SRIIGDYQIVFSR 252 (272)
Q Consensus 240 ~g~~~~~~~~~~k 252 (272)
.|.++++.|+++|
T Consensus 299 ~~~~~y~~i~a~k 311 (312)
T 3vc1_A 299 DGSFQYVLIAADR 311 (312)
T ss_dssp HTSEEEEEEEEEE
T ss_pred hcCCcEEEEEEee
Confidence 7899999999998
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=188.49 Aligned_cols=213 Identities=15% Similarity=0.157 Sum_probs=159.1
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC
Q 024096 23 VSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KAN 100 (272)
Q Consensus 23 ~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~ 100 (272)
...+++.+. +.++.+|||||||+|.++..+++.++++|+|+|+|+.+++.+++++...+++++++++++|+.+++ +++
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (267)
T 3kkz_A 34 TLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNE 113 (267)
T ss_dssp HHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred HHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCC
Confidence 445666665 678899999999999999999998667999999999999999999999999888999999999988 678
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhc
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 180 (272)
+||+|++..+++|+ ++..+++++.++|||||++++.++........ .....++... + ..+++..++.+. ++
T Consensus 114 ~fD~i~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~-~--~~~~~~~~~~~~-l~ 184 (267)
T 3kkz_A 114 ELDLIWSEGAIYNI---GFERGLNEWRKYLKKGGYLAVSECSWFTDERP--AEINDFWMDA-Y--PEIDTIPNQVAK-IH 184 (267)
T ss_dssp CEEEEEESSCGGGT---CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCC--HHHHHHHHHH-C--TTCEEHHHHHHH-HH
T ss_pred CEEEEEEcCCceec---CHHHHHHHHHHHcCCCCEEEEEEeeecCCCCh--HHHHHHHHHh-C--CCCCCHHHHHHH-HH
Confidence 99999999999999 35789999999999999999988763322110 0111122111 1 245678888754 45
Q ss_pred CCCcEEEEEEecC-----ccHHHHHHHHHHHHHhh---HHHHHh-ccCChHHHHHHHHHHHHHHHHHhcCCccEEEEEEE
Q 024096 181 SSGLCVEHLENIG-----IHYYQTLRCWRKNFMGK---QSEILA-LGFNEKFIRTWEYYFDYCAASFKSRIIGDYQIVFS 251 (272)
Q Consensus 181 ~~Gf~v~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~-~g~~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~ 251 (272)
++||+++++..++ .+|..++..|..++... .+++.. .+....+.+.|..|+. ..++.-++++
T Consensus 185 ~aGf~~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---------~~~~~f~~~~ 255 (267)
T 3kkz_A 185 KAGYLPVATFILPENCWTDHYFTPKVAAQKIFLTKYAGNKIAEEFSMLQSIEEELYHKYKE---------YYGYTFFIAK 255 (267)
T ss_dssp HTTEEEEEEEECCGGGTTTTTHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTT---------TEEEEEEEEE
T ss_pred HCCCEEEEEEECCHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcc---------ccCeEeehhh
Confidence 6999999998877 67888888888887542 222222 1223444677877643 4566666777
Q ss_pred eC
Q 024096 252 RP 253 (272)
Q Consensus 252 k~ 253 (272)
|.
T Consensus 256 ~~ 257 (267)
T 3kkz_A 256 KI 257 (267)
T ss_dssp EC
T ss_pred HH
Confidence 74
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=189.98 Aligned_cols=238 Identities=13% Similarity=0.131 Sum_probs=173.3
Q ss_pred ccccccCC---CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHH------HHH
Q 024096 3 YSCAIFKS---EHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEE------QLK 71 (272)
Q Consensus 3 y~~~~~~~---~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~------~~~ 71 (272)
|...+..+ ....+..+|......+++.+.+.++.+|||||||+|.++..+++.. ..+++|+|+|+. +++
T Consensus 9 y~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~ 88 (275)
T 3bkx_A 9 ITDLMALGPTANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLG 88 (275)
T ss_dssp HHTTSCCCSSTTHHHHHHHHHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHH
T ss_pred HHHhhhcCCCCCchHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHH
Confidence 45555544 3457889999999999999999999999999999999999999873 389999999997 999
Q ss_pred HHHHHHHHcCCCCCeEEEEcc---cCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCc
Q 024096 72 YAEIKVREAGLQDHIRFYLCD---YRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQC 147 (272)
Q Consensus 72 ~a~~~~~~~g~~~~i~~~~~d---~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 147 (272)
.+++++...++.++++++++| ...++ ++++||+|++..+++|+++. ..+++.+.++++|||++++.++..+...
T Consensus 89 ~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~~~~~~~l~~~gG~l~~~~~~~~~~~ 166 (275)
T 3bkx_A 89 QAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASA--NALALLFKNMAAVCDHVDVAEWSMQPTA 166 (275)
T ss_dssp HHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCH--HHHHHHHHHHTTTCSEEEEEEECSSCSS
T ss_pred HHHHHHHhcCCCCceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCH--HHHHHHHHHHhCCCCEEEEEEecCCCCc
Confidence 999999888876789999998 33444 56899999999999999654 5678888888888999999988765543
Q ss_pred cccccCcch-hhhhcc---c---CC--CCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHH--HHHHHHHhhHHHH-H
Q 024096 148 YDEYRLSPG-FIKEYI---F---PG--GCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLR--CWRKNFMGKQSEI-L 215 (272)
Q Consensus 148 ~~~~~~~~~-~~~~~~---~---p~--~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~ 215 (272)
......... ...... . +. ..+++.+++.+. ++++||+++.+..+. ..++. .|...+.....+. .
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~-l~~aGf~~~~~~~~~---~~~~~~~~W~~~~~~~~~~~~~ 242 (275)
T 3bkx_A 167 LDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDTLAQI-AHDNTWTYTAGTIVE---DPTLDDAHWEIATTNALLTELK 242 (275)
T ss_dssp GGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCCHHHHHHH-HHHHTCEEEECCCBC---CTTCTHHHHHHHHHHHHHHHSC
T ss_pred hhhhhHHHHHHHHHHHhhccccccccccccCCHHHHHHH-HHHCCCeeEEEEEec---CCCCCCchhhHHHHHHHHHHHH
Confidence 221111111 111110 0 11 246788888754 556999999887763 34444 7887555443332 2
Q ss_pred h-ccCChHHHHHHHHHHHHHHHHHhcCCccEEEEEEE
Q 024096 216 A-LGFNEKFIRTWEYYFDYCAASFKSRIIGDYQIVFS 251 (272)
Q Consensus 216 ~-~g~~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~ 251 (272)
. .||++.++++|..+ |.++ .+.++.+|+++.
T Consensus 243 ~~~g~~~~~~~~~~~~---~~~g--~~~~~~~~~~~~ 274 (275)
T 3bkx_A 243 LSTDLRDRVKPLLEAM---SHNG--TASLATFTGRIT 274 (275)
T ss_dssp CCHHHHHHHHHHHHHH---TTSC--CCCCCEEEEEEE
T ss_pred hhccccHHHHHHHHHH---Hhcc--ccccceeeEEEe
Confidence 2 47899999999983 3333 557888888764
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-23 Score=172.97 Aligned_cols=165 Identities=17% Similarity=0.145 Sum_probs=130.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
..+..+++.+.+.++.+|||+|||+|.++..+++..+.+++|+|+|+.+++.+++++...++.+++.++++|+.+++.++
T Consensus 23 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 23 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 44677888888899999999999999999999987678999999999999999999999888778999999999887778
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhccc-CCCCCCCHHHHHHHhh
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIF-PGGCLPSLGRVTSAMT 179 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~l~ 179 (272)
+||+|++..+++|++ ++..+++++.++|||||++++.+......... ..+...+.. ....+.+..++.+ ++
T Consensus 103 ~fD~V~~~~~~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~l 174 (256)
T 1nkv_A 103 KCDVAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPYWRQLPAT-----EEIAQACGVSSTSDFLTLPGLVG-AF 174 (256)
T ss_dssp CEEEEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSS-----HHHHHTTTCSCGGGSCCHHHHHH-HH
T ss_pred CCCEEEECCChHhcC--CHHHHHHHHHHHcCCCeEEEEecCcccCCCCh-----HHHHHHHhcccccccCCHHHHHH-HH
Confidence 899999999999995 45899999999999999999987654332110 111111111 1124567778875 45
Q ss_pred cCCCcEEEEEEecC
Q 024096 180 SSSGLCVEHLENIG 193 (272)
Q Consensus 180 ~~~Gf~v~~~~~~~ 193 (272)
+++||.++.+....
T Consensus 175 ~~aGf~~~~~~~~~ 188 (256)
T 1nkv_A 175 DDLGYDVVEMVLAD 188 (256)
T ss_dssp HTTTBCCCEEEECC
T ss_pred HHCCCeeEEEEeCC
Confidence 57999987766544
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=169.49 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=128.2
Q ss_pred HHHHHHHHc-CCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CC
Q 024096 22 KVSVLIEKA-RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KA 99 (272)
Q Consensus 22 ~~~~l~~~l-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~ 99 (272)
....+++.+ .+.++.+|||+|||+|.++..+++..+.+|+|+|+|+.+++.+++++...+++++++++++|+.+++ ++
T Consensus 33 ~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 112 (257)
T 3f4k_A 33 ATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQN 112 (257)
T ss_dssp HHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCT
T ss_pred HHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCC
Confidence 345566666 4678899999999999999999998555999999999999999999999999878999999999988 66
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhh
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMT 179 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~ 179 (272)
++||+|++..+++|+ +...+++++.++|||||++++.+......... .....++... . ..+++.+++.+. +
T Consensus 113 ~~fD~v~~~~~l~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~~~~~~~~~~-~--~~~~~~~~~~~~-l 183 (257)
T 3f4k_A 113 EELDLIWSEGAIYNI---GFERGMNEWSKYLKKGGFIAVSEASWFTSERP--AEIEDFWMDA-Y--PEISVIPTCIDK-M 183 (257)
T ss_dssp TCEEEEEEESCSCCC---CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCC--HHHHHHHHHH-C--TTCCBHHHHHHH-H
T ss_pred CCEEEEEecChHhhc---CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCh--HHHHHHHHHh-C--CCCCCHHHHHHH-H
Confidence 899999999999998 35789999999999999999988653222110 0111112111 1 235678888754 4
Q ss_pred cCCCcEEEEEEecC
Q 024096 180 SSSGLCVEHLENIG 193 (272)
Q Consensus 180 ~~~Gf~v~~~~~~~ 193 (272)
+++||+++....+.
T Consensus 184 ~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 184 ERAGYTPTAHFILP 197 (257)
T ss_dssp HHTTEEEEEEEECC
T ss_pred HHCCCeEEEEEECC
Confidence 56999999888766
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=179.04 Aligned_cols=215 Identities=16% Similarity=0.196 Sum_probs=154.1
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KAN 100 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~ 100 (272)
+..+++.+... +.+|||+|||+|.++..+++. +.+++|+|+|+.+++.+++++...++++++.++++|+.+++ .++
T Consensus 58 l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 135 (285)
T 4htf_A 58 LDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET 135 (285)
T ss_dssp HHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred HHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence 45667776654 679999999999999999997 88999999999999999999998888778999999999987 678
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccc-cCcchhhhhc-------ccCCCCCCCHH
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEY-RLSPGFIKEY-------IFPGGCLPSLG 172 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~-------~~p~~~~~~~~ 172 (272)
+||+|++..+++|++ ++..+++++.++|||||++++.++.......... ......+... ........+.+
T Consensus 136 ~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (285)
T 4htf_A 136 PVDLILFHAVLEWVA--DPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPT 213 (285)
T ss_dssp CEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHH
T ss_pred CceEEEECchhhccc--CHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHH
Confidence 999999999999994 5589999999999999999998765322110000 0000011000 11112445677
Q ss_pred HHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCccEEEEEEEe
Q 024096 173 RVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKSRIIGDYQIVFSR 252 (272)
Q Consensus 173 ~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~k 252 (272)
++.+ +++++||+++++..+..... .|...+. . ...+.+.+...+.+|....-.+...+.+++++|
T Consensus 214 ~l~~-~l~~aGf~v~~~~~~~~~~~----~~~~~~~----~------~~~~~~l~~~e~~~~~~~~~~~~~~~~~~varK 278 (285)
T 4htf_A 214 QVYL-WLEEAGWQIMGKTGVRVFHD----YLREKHQ----Q------RDCYEALLELETRYCRQEPYITLGRYIHVTARK 278 (285)
T ss_dssp HHHH-HHHHTTCEEEEEEEESSSGG----GCSSTTH----H------HHTHHHHHHHHHHHTTSTTGGGGCSEEEEEEEC
T ss_pred HHHH-HHHHCCCceeeeeeEEEeee----ccccccc----C------cccHHHHHHHHHHhcCCChHHHHHhheEEEEEc
Confidence 7764 55569999999888753221 1111000 0 011455677777777777778889999999999
Q ss_pred CCCC
Q 024096 253 PGKV 256 (272)
Q Consensus 253 ~~~~ 256 (272)
|+..
T Consensus 279 ~~~~ 282 (285)
T 4htf_A 279 PQSK 282 (285)
T ss_dssp CCC-
T ss_pred CCcc
Confidence 9653
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-23 Score=172.71 Aligned_cols=185 Identities=18% Similarity=0.210 Sum_probs=135.6
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc
Q 024096 14 DLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93 (272)
Q Consensus 14 ~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~ 93 (272)
+...++...+..+++.+...++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.+++++...+++ ++.++++|+
T Consensus 17 s~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~ 94 (260)
T 1vl5_A 17 SQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDA 94 (260)
T ss_dssp ------CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC
T ss_pred CccccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecH
Confidence 344566666788899998889999999999999999999987 569999999999999999999888875 799999999
Q ss_pred CCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccC-CCCCCCH
Q 024096 94 RQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFP-GGCLPSL 171 (272)
Q Consensus 94 ~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~ 171 (272)
.+++ ++++||+|++..+++|++ ++..+++++.++|||||++++.+...+.... .......+.....+ .....+.
T Consensus 95 ~~l~~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 170 (260)
T 1vl5_A 95 EQMPFTDERFHIVTCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDNSAPENDA--FDVFYNYVEKERDYSHHRAWKK 170 (260)
T ss_dssp -CCCSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHH--HHHHHHHHHHHHCTTCCCCCBH
T ss_pred HhCCCCCCCEEEEEEhhhhHhcC--CHHHHHHHHHHHcCCCCEEEEEEcCCCCCHH--HHHHHHHHHHhcCccccCCCCH
Confidence 9988 668999999999999995 5689999999999999999998776544311 00011111111111 2234567
Q ss_pred HHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHH
Q 024096 172 GRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNF 207 (272)
Q Consensus 172 ~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~ 207 (272)
.++.+ +++++||.+..+......+ .+..|.+.+
T Consensus 171 ~~~~~-~l~~aGf~~~~~~~~~~~~--~~~~~~~~~ 203 (260)
T 1vl5_A 171 SDWLK-MLEEAGFELEELHCFHKTF--IFEDWCDRM 203 (260)
T ss_dssp HHHHH-HHHHHTCEEEEEEEEEEEE--EHHHHHHHT
T ss_pred HHHHH-HHHHCCCeEEEEEEeeccC--CHHHHHHhc
Confidence 77764 4556999988877754322 245565544
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-23 Score=173.18 Aligned_cols=188 Identities=19% Similarity=0.277 Sum_probs=128.1
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc
Q 024096 2 TYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA 80 (272)
Q Consensus 2 ~y~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272)
.|.++++..+...+..........+.....+.++.+|||+|||+|.++..+++. ++.+++|+|+|+.+++.+++++...
T Consensus 5 ~Y~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 84 (276)
T 3mgg_A 5 EYVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN 84 (276)
T ss_dssp ------------------CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT
T ss_pred ccccCCCHHHHhhHHHHHHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 578888888877777766666666666667789999999999999999999998 5789999999999999999999988
Q ss_pred CCCCCeEEEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccc-cCc----
Q 024096 81 GLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEY-RLS---- 154 (272)
Q Consensus 81 g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~~~---- 154 (272)
+++ ++.+.++|+.+++ ++++||+|++..+++|++ ++..+++++.++|||||++++.+........... ...
T Consensus 85 ~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (276)
T 3mgg_A 85 GIK-NVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQ--SPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAW 161 (276)
T ss_dssp TCC-SEEEEECCGGGCCSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHH
T ss_pred CCC-CcEEEEcccccCCCCCCCeeEEEEechhhhcC--CHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHH
Confidence 875 7999999999988 678999999999999995 4579999999999999999997754321110000 000
Q ss_pred chhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecC
Q 024096 155 PGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 155 ~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272)
..+.......++...+..++. .+++++||++++++...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~-~~l~~aGf~~v~~~~~~ 199 (276)
T 3mgg_A 162 NCLIRVQAYMKGNSLVGRQIY-PLLQESGFEKIRVEPRM 199 (276)
T ss_dssp HHHHHHHHHTTCCTTGGGGHH-HHHHHTTCEEEEEEEEE
T ss_pred HHHHHHHHhcCCCcchHHHHH-HHHHHCCCCeEEEeeEE
Confidence 011111112233334445565 45556999998887654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-24 Score=176.18 Aligned_cols=169 Identities=18% Similarity=0.243 Sum_probs=133.1
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC--C-CCCCccEEEEe
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL--P-KANKYDRIISC 108 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~--~-~~~~fD~V~~~ 108 (272)
+.++.+|||||||+|.++..+++. +.+++|+|+|+.+++.++++ +.++++|+.+. + ++++||+|++.
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~ 108 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMIS 108 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEEC
Confidence 467789999999999999999987 77999999999999998764 68899998775 4 56899999999
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCC-CCCCHHHHHHHhhcCCCcEEE
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGG-CLPSLGRVTSAMTSSSGLCVE 187 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~l~~~~Gf~v~ 187 (272)
.+++|+++++...+++++.++|||||++++..+..... ......+..+.. ...+.+++. .+++++||.++
T Consensus 109 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~-~~l~~aGf~~~ 179 (240)
T 3dli_A 109 HFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL--------YSLINFYIDPTHKKPVHPETLK-FILEYLGFRDV 179 (240)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH--------HHHHHHTTSTTCCSCCCHHHHH-HHHHHHTCEEE
T ss_pred CchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh--------HHHHHHhcCccccccCCHHHHH-HHHHHCCCeEE
Confidence 99999987788999999999999999999977653211 122233344433 455667776 45556999999
Q ss_pred EEEecC----------ccHHHHHHHHHHH-HHhhHHHHHhccCC
Q 024096 188 HLENIG----------IHYYQTLRCWRKN-FMGKQSEILALGFN 220 (272)
Q Consensus 188 ~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~~g~~ 220 (272)
.+.... .+ ..++..|+++ +.++.+.+...+|+
T Consensus 180 ~~~~~~~~~~~~~l~~~~-~~~l~~w~~~~~~~~~~~~~~~~f~ 222 (240)
T 3dli_A 180 KIEFFEECEELTKLAKID-SNTVSEEVIRVINENIEKLNRILFG 222 (240)
T ss_dssp EEEEECCCCTTTSCCCCC-CSSSCHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEEeccCcccccccccc-cccccHHHHHhhhhhHHHHHhhccC
Confidence 888776 45 5577889988 87777777666554
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-22 Score=165.88 Aligned_cols=114 Identities=16% Similarity=0.230 Sum_probs=103.4
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEe
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISC 108 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~ 108 (272)
++++.+|||+|||+|..+..+++. ++++|+|+|+|+.|++.|++++...+...+++++++|+.+++. +.||+|++.
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~-~~~d~v~~~ 146 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 146 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-CSEEEEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-cccccceee
Confidence 578999999999999999999986 4679999999999999999999988887899999999999874 469999999
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCC
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272)
.+++|+++++...++++++++|||||++++.+...+..
T Consensus 147 ~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~ 184 (261)
T 4gek_A 147 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFED 184 (261)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSS
T ss_pred eeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCC
Confidence 99999988888899999999999999999988775543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.8e-22 Score=163.03 Aligned_cols=181 Identities=19% Similarity=0.244 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
|......+++.+.+.++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.+++++...+++ ++.++++|+.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~ 83 (239)
T 1xxl_A 6 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPF 83 (239)
T ss_dssp CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCS
T ss_pred cCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCCC
Confidence 4455577888899999999999999999999999986 569999999999999999999888874 7999999999988
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccC-CCCCCCHHHHHH
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFP-GGCLPSLGRVTS 176 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~ 176 (272)
++++||+|++..+++|++ ++..+++++.++|||||++++.+...+.... .......+.....+ .....+.+++.+
T Consensus 84 ~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (239)
T 1xxl_A 84 PDDSFDIITCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYAPEDPV--LDEFVNHLNRLRDPSHVRESSLSEWQA 159 (239)
T ss_dssp CTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECBCSSHH--HHHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred CCCcEEEEEECCchhhcc--CHHHHHHHHHHHcCCCcEEEEEEcCCCCChh--HHHHHHHHHHhccccccCCCCHHHHHH
Confidence 668999999999999994 5689999999999999999998776544311 11111111111111 223456777774
Q ss_pred HhhcCCCcEEEEEEecCccHHHHHHHHHHHHH
Q 024096 177 AMTSSSGLCVEHLENIGIHYYQTLRCWRKNFM 208 (272)
Q Consensus 177 ~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~ 208 (272)
+++++||.++.+......+ ....|.+.+.
T Consensus 160 -ll~~aGf~~~~~~~~~~~~--~~~~w~~~~~ 188 (239)
T 1xxl_A 160 -MFSANQLAYQDIQKWNLPI--QYDSWIKRGG 188 (239)
T ss_dssp -HHHHTTEEEEEEEEEEEEE--EHHHHHHHHT
T ss_pred -HHHHCCCcEEEEEeecCcc--CHHHHHHHcC
Confidence 5556999998877764322 2456766654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-21 Score=154.58 Aligned_cols=154 Identities=16% Similarity=0.099 Sum_probs=117.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcC-----------CCCCeEEEEc
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAG-----------LQDHIRFYLC 91 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g-----------~~~~i~~~~~ 91 (272)
+..+++.+.+.++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.|+++..... ...+++++++
T Consensus 11 l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 11 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 344566677788899999999999999999997 8899999999999999998764210 0247999999
Q ss_pred ccCCCC-CC-CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCC
Q 024096 92 DYRQLP-KA-NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLP 169 (272)
Q Consensus 92 d~~~~~-~~-~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 169 (272)
|+.+++ .+ ++||+|++..+++|++.++...++++++++|||||++++.....+... . ..| ....
T Consensus 90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~---~----------~~~-~~~~ 155 (203)
T 1pjz_A 90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL---L----------EGP-PFSV 155 (203)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS---S----------SSC-CCCC
T ss_pred ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc---c----------CCC-CCCC
Confidence 999998 33 799999999999999877778899999999999999665544432110 0 000 0123
Q ss_pred CHHHHHHHhhcCCCcEEEEEEecC
Q 024096 170 SLGRVTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 170 ~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272)
+.+++. .+.++ ||++..++...
T Consensus 156 ~~~el~-~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 156 PQTWLH-RVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp CHHHHH-HTSCS-SEEEEEEEESS
T ss_pred CHHHHH-HHhcC-CcEEEEecccc
Confidence 566666 45555 99998887754
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=156.06 Aligned_cols=164 Identities=18% Similarity=0.228 Sum_probs=122.9
Q ss_pred HHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 024096 24 SVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272)
Q Consensus 24 ~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272)
+.+++.+. ..++.+|||+|||+|.++..+++. ++.+++|+|+|+.+++.++++....+ ++.++++|+.+++..++
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~~~ 109 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFEEK 109 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCCSC
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCCCC
Confidence 45555555 467899999999999999999998 58899999999999999999875543 89999999999885589
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccC-------------cchhhhhcc--cCCC
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRL-------------SPGFIKEYI--FPGG 166 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-------------~~~~~~~~~--~p~~ 166 (272)
||+|++..+++|+++.+...+++++.++|||||++++.+...+......... ....+.... ....
T Consensus 110 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (234)
T 3dtn_A 110 YDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLD 189 (234)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CC
T ss_pred ceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccc
Confidence 9999999999999877667899999999999999999887765432111000 000000000 0223
Q ss_pred CCCCHHHHHHHhhcCCCcEEEEEEe
Q 024096 167 CLPSLGRVTSAMTSSSGLCVEHLEN 191 (272)
Q Consensus 167 ~~~~~~~~~~~l~~~~Gf~v~~~~~ 191 (272)
...+.+++. .+++++||+++++..
T Consensus 190 ~~~~~~~~~-~ll~~aGF~~v~~~~ 213 (234)
T 3dtn_A 190 KDIEMNQQL-NWLKEAGFRDVSCIY 213 (234)
T ss_dssp CCCBHHHHH-HHHHHTTCEEEEEEE
T ss_pred cccCHHHHH-HHHHHcCCCceeeee
Confidence 445677776 456679999887644
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-20 Score=151.53 Aligned_cols=155 Identities=19% Similarity=0.226 Sum_probs=127.1
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KA 99 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~ 99 (272)
...+++.+.+.++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.+++++...+++ ++.+.++|+.+++ ++
T Consensus 26 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCS
T ss_pred HHHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCC
Confidence 466788888889999999999999999999987 3579999999999999999999988875 7999999999988 66
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhh
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMT 179 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~ 179 (272)
++||+|++..+++|+ .+...+++++.++|||||++++.++......... +.....+.+++.+ ++
T Consensus 105 ~~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~l 168 (219)
T 3dh0_A 105 NTVDFIFMAFTFHEL--SEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGP-------------PPEEVYSEWEVGL-IL 168 (219)
T ss_dssp SCEEEEEEESCGGGC--SSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-------------CGGGSCCHHHHHH-HH
T ss_pred CCeeEEEeehhhhhc--CCHHHHHHHHHHHhCCCeEEEEEEecccccccCC-------------chhcccCHHHHHH-HH
Confidence 889999999999999 4568999999999999999999887654431110 0112346777764 45
Q ss_pred cCCCcEEEEEEecCc
Q 024096 180 SSSGLCVEHLENIGI 194 (272)
Q Consensus 180 ~~~Gf~v~~~~~~~~ 194 (272)
+++||+++.....+.
T Consensus 169 ~~~Gf~~~~~~~~~~ 183 (219)
T 3dh0_A 169 EDAGIRVGRVVEVGK 183 (219)
T ss_dssp HHTTCEEEEEEEETT
T ss_pred HHCCCEEEEEEeeCC
Confidence 569999988877653
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=155.91 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=121.6
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272)
..++..+..++ .+|||+|||+|.++..+++ .+.+|+|+|+|+.+++.++++....+...++.++++|+.+.+++++||
T Consensus 57 ~~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 134 (235)
T 3lcc_A 57 VHLVDTSSLPL-GRALVPGCGGGHDVVAMAS-PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFD 134 (235)
T ss_dssp HHHHHTTCSCC-EEEEEETCTTCHHHHHHCB-TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEE
T ss_pred HHHHHhcCCCC-CCEEEeCCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCee
Confidence 33444455444 4999999999999999987 488999999999999999999876555568999999999988777999
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCC
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSG 183 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~G 183 (272)
+|++..+++|+++++...+++++.++|||||++++.++........ . ....+.+++. .+++++|
T Consensus 135 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------~--~~~~~~~~~~-~~l~~~G 198 (235)
T 3lcc_A 135 LIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------P--PYKVDVSTFE-EVLVPIG 198 (235)
T ss_dssp EEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------S--SCCCCHHHHH-HHHGGGT
T ss_pred EEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------C--CccCCHHHHH-HHHHHcC
Confidence 9999999999987788999999999999999999876653321100 0 0124566676 4556799
Q ss_pred cEEEEEEecCc
Q 024096 184 LCVEHLENIGI 194 (272)
Q Consensus 184 f~v~~~~~~~~ 194 (272)
|+++.++....
T Consensus 199 f~~~~~~~~~~ 209 (235)
T 3lcc_A 199 FKAVSVEENPH 209 (235)
T ss_dssp EEEEEEEECTT
T ss_pred CeEEEEEecCC
Confidence 99999887654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-21 Score=158.36 Aligned_cols=120 Identities=23% Similarity=0.289 Sum_probs=107.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KA 99 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~ 99 (272)
...+.+++.+...++ +|||+|||+|.++..+++.++.+++|+|+|+.+++.+++++...++.+++.++++|+.+++ ++
T Consensus 31 ~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 31 IIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 445677778887777 9999999999999999987678999999999999999999999988779999999999988 66
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
++||+|++..+++|+ +++..+++++.++|||||++++.+...
T Consensus 110 ~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~ 151 (219)
T 3dlc_A 110 NYADLIVSRGSVFFW--EDVATAFREIYRILKSGGKTYIGGGFG 151 (219)
T ss_dssp TCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred ccccEEEECchHhhc--cCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 899999999999999 566899999999999999999976543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=154.38 Aligned_cols=125 Identities=18% Similarity=0.283 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC----CeEEE
Q 024096 15 LEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQD----HIRFY 89 (272)
Q Consensus 15 l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~----~i~~~ 89 (272)
+.......++.+++.+...++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.+++++...++++ ++.++
T Consensus 10 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~ 89 (219)
T 3jwg_A 10 KLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLF 89 (219)
T ss_dssp --CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEE
T ss_pred CCcchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEE
Confidence 33344445566666666567889999999999999999987 44799999999999999999988776654 89999
Q ss_pred EcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 90 LCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 90 ~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
++|+...+ .+++||+|++..+++|+++++...+++++.++|||||.++..
T Consensus 90 ~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 90 QSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp ECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred eCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 99997777 568999999999999998777789999999999999966654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=154.54 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=121.2
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272)
..+++.+...++.+|||+|||+|.++..+++. +.+++|+|+++.+++.++++.. .++.++++|+.+++..++||
T Consensus 35 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~~~fD 108 (220)
T 3hnr_A 35 EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVPTSID 108 (220)
T ss_dssp HHHHHHHHHTCCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCCSCCS
T ss_pred HHHHHHhhccCCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCCCCeE
Confidence 45666666668899999999999999999997 8899999999999999998753 47899999999988448999
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhh-------cccCCCCCCCHHHHHH
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKE-------YIFPGGCLPSLGRVTS 176 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-------~~~p~~~~~~~~~~~~ 176 (272)
+|++..+++|+++.....+++++.++|||||++++.++..+...... ........ ...+...+++.+++.
T Consensus 109 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 185 (220)
T 3hnr_A 109 TIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYD--KTVEAAKQRGFHQLANDLQTEYYTRIPVMQ- 185 (220)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHH--HHHHHHHHTTCHHHHHHHHHSCCCBHHHHH-
T ss_pred EEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHH--HHHHHHHhCCCccchhhcchhhcCCHHHHH-
Confidence 99999999999776555699999999999999999876544321110 00000000 001112456777776
Q ss_pred HhhcCCCcEEEEEEecC
Q 024096 177 AMTSSSGLCVEHLENIG 193 (272)
Q Consensus 177 ~l~~~~Gf~v~~~~~~~ 193 (272)
.+++++||++.......
T Consensus 186 ~~l~~aGf~v~~~~~~~ 202 (220)
T 3hnr_A 186 TIFENNGFHVTFTRLNH 202 (220)
T ss_dssp HHHHHTTEEEEEEECSS
T ss_pred HHHHHCCCEEEEeeccc
Confidence 45567999998776543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=152.06 Aligned_cols=165 Identities=18% Similarity=0.210 Sum_probs=122.5
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 024096 23 VSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272)
Q Consensus 23 ~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272)
...+++.+. ..++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.+++ .+. .++.++++|+.++.++++
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~~~~~~ 107 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDWTPDRQ 107 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSCCCSSC
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccCCCCCc
Confidence 445666665 677889999999999999999997 8899999999999999987 344 479999999988866789
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccC--cchhhhhcccCC------CCCCCHHH
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRL--SPGFIKEYIFPG------GCLPSLGR 173 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~--~~~~~~~~~~p~------~~~~~~~~ 173 (272)
||+|++..+++|++++....+++++.++|||||.+++.++..+......... ....+...+..+ ..+++.++
T Consensus 108 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (218)
T 3ou2_A 108 WDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAE 187 (218)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHH
T ss_pred eeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHH
Confidence 9999999999999876678999999999999999999888764432211100 011111111111 23467788
Q ss_pred HHHHhhcCCCcEEEEEEecCc
Q 024096 174 VTSAMTSSSGLCVEHLENIGI 194 (272)
Q Consensus 174 ~~~~l~~~~Gf~v~~~~~~~~ 194 (272)
+.+ +++++||++...+....
T Consensus 188 ~~~-~l~~aGf~v~~~~~~~~ 207 (218)
T 3ou2_A 188 LTE-RLTALGWSCSVDEVHPG 207 (218)
T ss_dssp HHH-HHHHTTEEEEEEEEETT
T ss_pred HHH-HHHHCCCEEEeeecccc
Confidence 874 55569999877665443
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-20 Score=154.80 Aligned_cols=163 Identities=16% Similarity=0.158 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272)
Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272)
+......+++.+...++.+|||+|||+|.++..+++. ++.+++|+|+|+.+++.++++ ..++.++++|+.+++
T Consensus 18 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~ 91 (259)
T 2p35_A 18 RTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK 91 (259)
T ss_dssp GGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC
Confidence 4445567888888888999999999999999999987 688999999999999999887 147899999999888
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCcccc-ccCcc---hhhhhcc---cCCCCCCC
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDE-YRLSP---GFIKEYI---FPGGCLPS 170 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~~~~---~~~~~~~---~p~~~~~~ 170 (272)
++++||+|++..+++|+ .++..+++++.++|||||++++..+......... ..... .+..... .....+.+
T Consensus 92 ~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T 2p35_A 92 PAQKADLLYANAVFQWV--PDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPP 169 (259)
T ss_dssp CSSCEEEEEEESCGGGS--TTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCC
T ss_pred ccCCcCEEEEeCchhhC--CCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCC
Confidence 66889999999999999 4568999999999999999999876432211000 00000 0110000 11234567
Q ss_pred HHHHHHHhhcCCCcEEEEEE
Q 024096 171 LGRVTSAMTSSSGLCVEHLE 190 (272)
Q Consensus 171 ~~~~~~~l~~~~Gf~v~~~~ 190 (272)
.+++.+ +++++||.+...+
T Consensus 170 ~~~~~~-~l~~aGf~v~~~~ 188 (259)
T 2p35_A 170 PSDYFN-ALSPKSSRVDVWH 188 (259)
T ss_dssp HHHHHH-HHGGGEEEEEEEE
T ss_pred HHHHHH-HHHhcCCceEEEE
Confidence 777764 5556999765443
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-19 Score=158.96 Aligned_cols=164 Identities=16% Similarity=0.147 Sum_probs=132.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272)
...+++.++..++.+|||+|||+|.++..+++. ++.+++++|+ +.+++.+++++...++.+++++..+|+.+ +.+..
T Consensus 191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~p~~ 268 (369)
T 3gwz_A 191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TIPDG 268 (369)
T ss_dssp HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CCCSS
T ss_pred HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-CCCCC
Confidence 466778888888899999999999999999998 7889999999 99999999999998888899999999983 32238
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcC
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSS 181 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 181 (272)
||+|++..++++++++....+++++++.|+|||++++.+...+...... ..... +......++...+.+++.+ ++++
T Consensus 269 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~d-~~~~~~~~g~~~t~~e~~~-ll~~ 345 (369)
T 3gwz_A 269 ADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS-TLFVD-LLLLVLVGGAERSESEFAA-LLEK 345 (369)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-HHHHH-HHHHHHHSCCCBCHHHHHH-HHHT
T ss_pred ceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-hhHhh-HHHHhhcCCccCCHHHHHH-HHHH
Confidence 9999999999999887777999999999999999999988876543211 00001 1112234566678888874 5567
Q ss_pred CCcEEEEEEe
Q 024096 182 SGLCVEHLEN 191 (272)
Q Consensus 182 ~Gf~v~~~~~ 191 (272)
+||+++++..
T Consensus 346 aGf~~~~~~~ 355 (369)
T 3gwz_A 346 SGLRVERSLP 355 (369)
T ss_dssp TTEEEEEEEE
T ss_pred CCCeEEEEEE
Confidence 9999998877
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=154.20 Aligned_cols=120 Identities=18% Similarity=0.273 Sum_probs=103.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC----CeEEEEcccCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQD----HIRFYLCDYRQ 95 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~----~i~~~~~d~~~ 95 (272)
..++.+++.+...++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.+++++...+++. ++.++++|+..
T Consensus 16 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 95 (217)
T 3jwh_A 16 QRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTY 95 (217)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccc
Confidence 34456666666667889999999999999999997 44799999999999999999988777654 79999999977
Q ss_pred CC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 96 LP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 96 ~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
.+ ..++||+|++..+++|+++++...+++++.++|||||.+++..
T Consensus 96 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 96 QDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp CCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 66 5579999999999999987777899999999999999777643
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-20 Score=154.97 Aligned_cols=165 Identities=14% Similarity=0.123 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC
Q 024096 15 LEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR 94 (272)
Q Consensus 15 l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~ 94 (272)
+...+......+++.+...++.+|||+|||+|.++..+++....+++++|+|+.+++.++++.... .++.++++|+.
T Consensus 74 ~~~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~ 150 (254)
T 1xtp_A 74 VHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASME 150 (254)
T ss_dssp GHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGG
T ss_pred cCHHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHH
Confidence 334555556778888887888999999999999999998875568999999999999999887543 47999999999
Q ss_pred CCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHH
Q 024096 95 QLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGR 173 (272)
Q Consensus 95 ~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 173 (272)
+++ ++++||+|++..+++|++++++..+++++.++|||||++++.+.......... .. .......+.++
T Consensus 151 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--------~~--~~~~~~~~~~~ 220 (254)
T 1xtp_A 151 TATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV--------DK--EDSSLTRSDIH 220 (254)
T ss_dssp GCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEE--------ET--TTTEEEBCHHH
T ss_pred HCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccccee--------cc--cCCcccCCHHH
Confidence 887 56899999999999999887889999999999999999999876543221100 00 00112246677
Q ss_pred HHHHhhcCCCcEEEEEEecC
Q 024096 174 VTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 174 ~~~~l~~~~Gf~v~~~~~~~ 193 (272)
+.+ +++++||+++++....
T Consensus 221 ~~~-~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 221 YKR-LFNESGVRVVKEAFQE 239 (254)
T ss_dssp HHH-HHHHHTCCEEEEEECT
T ss_pred HHH-HHHHCCCEEEEeeecC
Confidence 764 5556999998876643
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-20 Score=159.13 Aligned_cols=162 Identities=15% Similarity=0.199 Sum_probs=127.1
Q ss_pred HHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 024096 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272)
.+++.++..++.+|||+|||+|..+..+++. ++.+++++|+ +.+++.+++++...++.+++++..+|+.+ +.+.+||
T Consensus 160 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p~~~D 237 (332)
T 3i53_A 160 GIAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLPAGAG 237 (332)
T ss_dssp TGGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCCCSCS
T ss_pred HHHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCCCCCc
Confidence 3444555667789999999999999999988 7889999999 99999999999998887899999999973 3223899
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCC
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSG 183 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~G 183 (272)
+|++..++||+++++...+++++++.|+|||++++.+...+.. ... .... +......++...+.+++.+ +++++|
T Consensus 238 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~~~-~~~d-~~~~~~~~~~~~t~~e~~~-ll~~aG 312 (332)
T 3i53_A 238 GYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE--HAG-TGMD-LRMLTYFGGKERSLAELGE-LAAQAG 312 (332)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-----CC-HHHH-HHHHHHHSCCCCCHHHHHH-HHHHTT
T ss_pred EEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC--Ccc-HHHH-HHHHhhCCCCCCCHHHHHH-HHHHCC
Confidence 9999999999988778999999999999999999988876554 110 0111 1111224556678888875 555799
Q ss_pred cEEEEEEecC
Q 024096 184 LCVEHLENIG 193 (272)
Q Consensus 184 f~v~~~~~~~ 193 (272)
|+++++...+
T Consensus 313 f~~~~~~~~~ 322 (332)
T 3i53_A 313 LAVRAAHPIS 322 (332)
T ss_dssp EEEEEEEECS
T ss_pred CEEEEEEECC
Confidence 9999887765
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-20 Score=154.79 Aligned_cols=158 Identities=20% Similarity=0.274 Sum_probs=118.8
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272)
+.+++.+...++.+|||+|||+|.++..+++ ++.+|+|+|+|+.+++.++++. .++.+.++|+.+++.+++||
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~fD 119 (279)
T 3ccf_A 47 EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVDKPLD 119 (279)
T ss_dssp CHHHHHHCCCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCSSCEE
T ss_pred HHHHHHhCCCCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcCCCcC
Confidence 4667777888899999999999999999998 5889999999999999998764 37899999999988668999
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhc------ccCCCCCCCHHHHHHH
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEY------IFPGGCLPSLGRVTSA 177 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~------~~p~~~~~~~~~~~~~ 177 (272)
+|++..+++|++ ++..+++++.++|||||++++..+...... .........+... ......+++.+++.+
T Consensus 120 ~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 195 (279)
T 3ccf_A 120 AVFSNAMLHWVK--EPEAAIASIHQALKSGGRFVAEFGGKGNIK-YILEALYNALETLGIHNPQALNPWYFPSIGEYVN- 195 (279)
T ss_dssp EEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECTTTTH-HHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHH-
T ss_pred EEEEcchhhhCc--CHHHHHHHHHHhcCCCcEEEEEecCCcchH-HHHHHHHHHHHhcCCccccCcCceeCCCHHHHHH-
Confidence 999999999994 568999999999999999999766532210 0000000011110 011123557777764
Q ss_pred hhcCCCcEEEEEEec
Q 024096 178 MTSSSGLCVEHLENI 192 (272)
Q Consensus 178 l~~~~Gf~v~~~~~~ 192 (272)
+++++||+++.++..
T Consensus 196 ~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 196 ILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHTEEEEEEEEE
T ss_pred HHHHcCCEEEEEEEe
Confidence 555699998876654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=156.90 Aligned_cols=182 Identities=16% Similarity=0.175 Sum_probs=119.3
Q ss_pred ccccccCCCCCCHH--HHHHHHHHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH
Q 024096 3 YSCAIFKSEHEDLE--VGQMRKVSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVRE 79 (272)
Q Consensus 3 y~~~~~~~~~~~l~--~aq~~~~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~ 79 (272)
|...+|+....... .......+.+++.+. ..++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~ 86 (250)
T 2p7i_A 8 YDQEIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLKD 86 (250)
T ss_dssp ---------------CHHHHTHHHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSCS
T ss_pred CCHHHHhhHHHHhcCccchhhHHHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhhhC
Confidence 45566765544332 112223345555554 356789999999999999999986 66899999999999999987432
Q ss_pred cCCCCCeEEEEcccCCCCCCCCccEEEEechhhccChhhHHHHHHHHH-hcCccCcEEEEEeecCCCCccc------ccc
Q 024096 80 AGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCE-SLLATHGLLVLQFISAPDQCYD------EYR 152 (272)
Q Consensus 80 ~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~-~~LkpgG~l~i~~~~~~~~~~~------~~~ 152 (272)
++.++++|+.+.+++++||+|++..+++|++ ++..+++++. ++|||||++++.++........ ...
T Consensus 87 -----~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 159 (250)
T 2p7i_A 87 -----GITYIHSRFEDAQLPRRYDNIVLTHVLEHID--DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIIS 159 (250)
T ss_dssp -----CEEEEESCGGGCCCSSCEEEEEEESCGGGCS--SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSS
T ss_pred -----CeEEEEccHHHcCcCCcccEEEEhhHHHhhc--CHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccc
Confidence 7999999998887678999999999999994 5589999999 9999999999987654321100 000
Q ss_pred Ccchhhhhc-ccCCCCCCCHHHHHHHhhcCCCcEEEEEEecC
Q 024096 153 LSPGFIKEY-IFPGGCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 153 ~~~~~~~~~-~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272)
....+.... ........+.+++.+ +++++||+++++..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~Gf~~~~~~~~~ 200 (250)
T 2p7i_A 160 HNSAVTEAEFAHGHRCTYALDTLER-DASRAGLQVTYRSGIF 200 (250)
T ss_dssp STTCCCHHHHHTTCCCCCCHHHHHH-HHHHTTCEEEEEEEEE
T ss_pred cchhcccccccccccccCCHHHHHH-HHHHCCCeEEEEeeeE
Confidence 000000000 112234567777774 5556999999887643
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-19 Score=151.90 Aligned_cols=166 Identities=17% Similarity=0.184 Sum_probs=121.9
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEec
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCG 109 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~ 109 (272)
+.++.+|||+|||+|.++..+++....+++|+|+|+.+++.++++....++..++.++++|+.+.+ ++++||+|++..
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 468899999999999999988887445999999999999999999988877668999999999876 367899999999
Q ss_pred hhhc--cChhhHHHHHHHHHhcCccCcEEEEEeecCCCCc------------ccccc----Ccch-hhhhcc---cC---
Q 024096 110 MIEH--VGHDYMEEFFGCCESLLATHGLLVLQFISAPDQC------------YDEYR----LSPG-FIKEYI---FP--- 164 (272)
Q Consensus 110 ~~~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------------~~~~~----~~~~-~~~~~~---~p--- 164 (272)
+++| ...++...+++++.++|||||++++..+...... +.... .... +...|. ..
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 221 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN 221 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhc
Confidence 9988 4456788999999999999999999765421100 00000 0000 000010 00
Q ss_pred --CCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHH
Q 024096 165 --GGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQ 198 (272)
Q Consensus 165 --~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~ 198 (272)
...+.+.+++. .+++++||+++....+...|..
T Consensus 222 ~~~~~~~~~~~l~-~ll~~aGf~~v~~~~~~~~~~~ 256 (298)
T 1ri5_A 222 NCIEYFVDFTRMV-DGFKRLGLSLVERKGFIDFYED 256 (298)
T ss_dssp SEEEECCCHHHHH-HHHHTTTEEEEEEEEHHHHHHH
T ss_pred CCcccccCHHHHH-HHHHHcCCEEEEecCHHHHHHH
Confidence 01345677776 5566799999999887654443
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-20 Score=158.68 Aligned_cols=170 Identities=15% Similarity=0.209 Sum_probs=133.4
Q ss_pred HHHHHHHcCC--CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 024096 23 VSVLIEKARV--SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA 99 (272)
Q Consensus 23 ~~~l~~~l~~--~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~ 99 (272)
...+++.++. .++.+|||+|||+|..+..+++. ++.+++++|++ .+++.+++++...++.++++++.+|+.+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 230 (335)
T 2r3s_A 152 AQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYG 230 (335)
T ss_dssp HHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC
T ss_pred HHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCC
Confidence 3567777777 78899999999999999999988 67899999999 99999999999888877899999999886644
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccc-cCcchhhhhcccCCCCCCCHHHHHHHh
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEY-RLSPGFIKEYIFPGGCLPSLGRVTSAM 178 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~l 178 (272)
+.||+|++..+++|+++++...+++++.++|+|||++++.+...+....... ............+++...+.+++.+ +
T Consensus 231 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-l 309 (335)
T 2r3s_A 231 NDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYES-M 309 (335)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHH-H
T ss_pred CCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHH-H
Confidence 4599999999999998888889999999999999999998887654321111 0011111111223566778888875 4
Q ss_pred hcCCCcEEEEEEecCc
Q 024096 179 TSSSGLCVEHLENIGI 194 (272)
Q Consensus 179 ~~~~Gf~v~~~~~~~~ 194 (272)
++++||.++++.....
T Consensus 310 l~~aGf~~~~~~~~~~ 325 (335)
T 2r3s_A 310 FSNAGFSHSQLHSLPT 325 (335)
T ss_dssp HHHTTCSEEEEECCTT
T ss_pred HHHCCCCeeeEEECCC
Confidence 5569999988877653
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=157.87 Aligned_cols=104 Identities=17% Similarity=0.322 Sum_probs=93.3
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEec
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCG 109 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~ 109 (272)
.+.++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.+++++ . +...++.+.++|+.+++ ++++||+|++..
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 112 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAIPLPDESVHGVIVVH 112 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSCCSCTTCEEEEEEES
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccCCCCCCCeeEEEECC
Confidence 5678899999999999999999987 789999999999999999887 2 23358999999999888 668999999999
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+++|++ +...+++++.++|||||++++.
T Consensus 113 ~l~~~~--~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 113 LWHLVP--DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp CGGGCT--THHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhcC--CHHHHHHHHHHHCCCCcEEEEE
Confidence 999995 5689999999999999999987
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-19 Score=141.60 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=120.6
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272)
..+++.+...++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.+++++...+++ ++.+.++|+.+.+.+++||
T Consensus 22 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 22 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHHTTTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCCCCCCEE
T ss_pred HHHHHHhhccCCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCCCCCCce
Confidence 35666777778889999999999999999997 789999999999999999999888774 6999999999877667899
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCC
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSG 183 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~G 183 (272)
+|++..+++|++.++...+++++.++|||||++++.+...+...... .+.....+.+++.+ +.++
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~------------~~~~~~~~~~~l~~-~~~~-- 164 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT------------VGFPFAFKEGELRR-YYEG-- 164 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC------------SCCSCCBCTTHHHH-HTTT--
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC------------CCCCCccCHHHHHH-HhcC--
Confidence 99999999999877889999999999999999888666543321100 11122345666664 4433
Q ss_pred cEEEEEEec
Q 024096 184 LCVEHLENI 192 (272)
Q Consensus 184 f~v~~~~~~ 192 (272)
|++++....
T Consensus 165 f~~~~~~~~ 173 (199)
T 2xvm_A 165 WERVKYNED 173 (199)
T ss_dssp SEEEEEECC
T ss_pred CeEEEeccc
Confidence 988877653
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.7e-20 Score=159.72 Aligned_cols=163 Identities=13% Similarity=0.149 Sum_probs=130.4
Q ss_pred HHHHHcCCCC-CCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC
Q 024096 25 VLIEKARVSK-GQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KAN 100 (272)
Q Consensus 25 ~l~~~l~~~~-~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~ 100 (272)
.+++.++..+ +.+|||||||+|.++..+++. ++.+++++|+ +.+++.+++++...++.++++++.+|+.+.+ .++
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 247 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGG 247 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTC
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCC
Confidence 6777777777 899999999999999999988 7889999999 8899999999998888778999999998876 567
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccC-cchhhhhcccCCCCCCCHHHHHHHhh
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRL-SPGFIKEYIFPGGCLPSLGRVTSAMT 179 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~l~ 179 (272)
.||+|++..++||+++++...+++++++.|+|||++++.+...+......... ..........+++...+.+++.+ ++
T Consensus 248 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~-ll 326 (352)
T 3mcz_A 248 AADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAG-VV 326 (352)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHH-HH
T ss_pred CccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHH-HH
Confidence 79999999999999888889999999999999999999988766543211110 01111111234566778888874 55
Q ss_pred cCCCcEEEEE
Q 024096 180 SSSGLCVEHL 189 (272)
Q Consensus 180 ~~~Gf~v~~~ 189 (272)
+++||++++.
T Consensus 327 ~~aGf~~~~~ 336 (352)
T 3mcz_A 327 RDAGLAVGER 336 (352)
T ss_dssp HHTTCEEEEE
T ss_pred HHCCCceeee
Confidence 5799998873
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-20 Score=157.97 Aligned_cols=163 Identities=20% Similarity=0.272 Sum_probs=122.5
Q ss_pred CCCCCCEEEEECCCchHHHHHHH-H-ccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEe
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIV-K-QTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISC 108 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~-~-~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~ 108 (272)
.+.++.+|||+|||+|..+..++ . .++.+++|+|+|+.+++.+++++...++.++++++++|+.+++.+++||+|++.
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~ 194 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSN 194 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECC
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEEC
Confidence 45788999999999999999985 3 378899999999999999999999888877899999999998844999999999
Q ss_pred chhhccChh-hHHHHHHHHHhcCccCcEEEEEeecCCCCccccc-------cCcchhhhhccc-----CC-CCCCCHHHH
Q 024096 109 GMIEHVGHD-YMEEFFGCCESLLATHGLLVLQFISAPDQCYDEY-------RLSPGFIKEYIF-----PG-GCLPSLGRV 174 (272)
Q Consensus 109 ~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-------~~~~~~~~~~~~-----p~-~~~~~~~~~ 174 (272)
.+++|+++. ....+++++.++|||||++++.++..+....... .........+.+ .+ ..+.+.+++
T Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 195 GLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred ChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 999999644 3346899999999999999998766543211111 000001111111 11 134678888
Q ss_pred HHHhhcCCCcEEEEEEecCc
Q 024096 175 TSAMTSSSGLCVEHLENIGI 194 (272)
Q Consensus 175 ~~~l~~~~Gf~v~~~~~~~~ 194 (272)
.+ +++++||+++++.....
T Consensus 275 ~~-~l~~aGF~~v~~~~~~~ 293 (305)
T 3ocj_A 275 RA-QLEEAGFTDLRFEDDRA 293 (305)
T ss_dssp HH-HHHHTTCEEEEEECCTT
T ss_pred HH-HHHHCCCEEEEEEcccC
Confidence 75 55569999998886543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.2e-20 Score=153.04 Aligned_cols=148 Identities=14% Similarity=0.083 Sum_probs=113.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC--CC-
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ--LP- 97 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~--~~- 97 (272)
...+.+++.+.+.++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.+++++... .+.....++.. ..
T Consensus 32 ~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~~~~~~~ 106 (261)
T 3iv6_A 32 SDRENDIFLENIVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADR----CVTIDLLDITAEIPKE 106 (261)
T ss_dssp CHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSS----CCEEEECCTTSCCCGG
T ss_pred HHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc----cceeeeeecccccccc
Confidence 34567888888999999999999999999999997 789999999999999999986543 12222222221 11
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC-----------------------CccccccCc
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD-----------------------QCYDEYRLS 154 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-----------------------~~~~~~~~~ 154 (272)
.+++||+|++..+++|++.++...+++++.++| |||+++++...... .....+...
T Consensus 107 ~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~~l~~~~~~g~~~~~~~~~~~~~~~~~~ 185 (261)
T 3iv6_A 107 LAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGFYDIDLKLIEYGEQSGTLAKFFDPSDKTFHFREA 185 (261)
T ss_dssp GTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHHHHHHHHTTTCHHHHEETTTTEEEGGGT
T ss_pred cCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCcccccHHHHHHHHhcCCeeeeecCcccceehhhh
Confidence 247899999999999998888889999999999 99999997543211 011111335
Q ss_pred chhhhhcccCCCCCCCHHHH
Q 024096 155 PGFIKEYIFPGGCLPSLGRV 174 (272)
Q Consensus 155 ~~~~~~~~~p~~~~~~~~~~ 174 (272)
..|+.+|++|+|.+|+..-+
T Consensus 186 ~~~i~~~~~p~g~~~~~~~~ 205 (261)
T 3iv6_A 186 GDVLDRALVPHGLIDKPTLL 205 (261)
T ss_dssp THHHHHHCCCCTTCCHHHHH
T ss_pred hhHHHhccCCCCcccHHHHH
Confidence 67889999999998876543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=147.00 Aligned_cols=148 Identities=18% Similarity=0.250 Sum_probs=116.5
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKY 102 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~f 102 (272)
+..++.. +.++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++. ++.+.++|+.+++.+++|
T Consensus 34 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~~f 103 (211)
T 3e23_A 34 LTKFLGE--LPAGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLDAIDAY 103 (211)
T ss_dssp HHHHHTT--SCTTCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCCCCSCE
T ss_pred HHHHHHh--cCCCCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCCCCCcE
Confidence 3444444 347889999999999999999987 789999999999999999886 467889999998877899
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCC
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSS 182 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~ 182 (272)
|+|++..+++|++.+++..+++++.++|||||++++............ ... .....+.+++.+ +++++
T Consensus 104 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~-~l~~a 171 (211)
T 3e23_A 104 DAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDK-------LAR----YYNYPSEEWLRA-RYAEA 171 (211)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECT-------TSC----EECCCCHHHHHH-HHHHH
T ss_pred EEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccc-------cch----hccCCCHHHHHH-HHHhC
Confidence 999999999999877889999999999999999999765433221110 011 113457777775 45569
Q ss_pred C-cEEEEEEec
Q 024096 183 G-LCVEHLENI 192 (272)
Q Consensus 183 G-f~v~~~~~~ 192 (272)
| |+++.+...
T Consensus 172 G~f~~~~~~~~ 182 (211)
T 3e23_A 172 GTWASVAVESS 182 (211)
T ss_dssp CCCSEEEEEEE
T ss_pred CCcEEEEEEec
Confidence 9 998887654
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-19 Score=157.42 Aligned_cols=166 Identities=18% Similarity=0.195 Sum_probs=126.5
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKY 102 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~f 102 (272)
+.+++.+++.++.+|||+|||+|.++..+++. ++.+++++|+ +.+++.+++++...++.++++++.+|+.+..+ ..|
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 249 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP-VTA 249 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-CCE
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCC-CCC
Confidence 45666777788899999999999999999988 6789999999 99999999999988887799999999876222 359
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee--cCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhc
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI--SAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 180 (272)
|+|++..+++|+++++...+++++.++|||||++++.+. ..++........... +.....+++...+.+++.+ +++
T Consensus 250 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-ll~ 327 (374)
T 1qzz_A 250 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLD-LRMLTFMGGRVRTRDEVVD-LAG 327 (374)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHH-HHHHHHHSCCCCCHHHHHH-HHH
T ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcc-hHHHHhCCCcCCCHHHHHH-HHH
Confidence 999999999999877667999999999999999999887 544321111111011 1111223466678888875 555
Q ss_pred CCCcEEEEEEecC
Q 024096 181 SSGLCVEHLENIG 193 (272)
Q Consensus 181 ~~Gf~v~~~~~~~ 193 (272)
++||+++++...+
T Consensus 328 ~aGf~~~~~~~~~ 340 (374)
T 1qzz_A 328 SAGLALASERTSG 340 (374)
T ss_dssp TTTEEEEEEEEEC
T ss_pred HCCCceEEEEECC
Confidence 7999998887765
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=144.69 Aligned_cols=142 Identities=14% Similarity=0.189 Sum_probs=114.4
Q ss_pred CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechhhc
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEH 113 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~ 113 (272)
+.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++. .++.++++|+.+++ ++++||+|++..+++|
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIH 114 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTT
T ss_pred CCeEEEecCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhc
Confidence 789999999999999999997 779999999999999998872 37899999999988 6789999999999999
Q ss_pred cChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecC
Q 024096 114 VGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272)
++.+++..+++++.++|||||++++..+...... .+... .......+.+++.+ +++++||+++.+....
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~--~~~~~--------~~~~~~~~~~~~~~-~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 115 MGPGELPDALVALRMAVEDGGGLLMSFFSGPSLE--PMYHP--------VATAYRWPLPELAQ-ALETAGFQVTSSHWDP 183 (203)
T ss_dssp CCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCE--EECCS--------SSCEEECCHHHHHH-HHHHTTEEEEEEEECT
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchh--hhhch--------hhhhccCCHHHHHH-HHHHCCCcEEEEEecC
Confidence 9877889999999999999999999876644311 11000 00112356777764 5556999999988765
Q ss_pred c
Q 024096 194 I 194 (272)
Q Consensus 194 ~ 194 (272)
.
T Consensus 184 ~ 184 (203)
T 3h2b_A 184 R 184 (203)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=158.73 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=124.7
Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC--CCCCCcc
Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL--PKANKYD 103 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~--~~~~~fD 103 (272)
+..+...++.+|||||||+|.++..+++. ++.+++++|+ +.+++.+++++...++.++++++.+|+.+. +.+++||
T Consensus 172 l~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D 250 (363)
T 3dp7_A 172 LEIVFSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFD 250 (363)
T ss_dssp HHHHGGGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCS
T ss_pred HHHhcccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcC
Confidence 33333346689999999999999999988 7889999999 999999999998888777999999999885 3237899
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccC----cchhhhhcccCCCCCCCHHHHHHHhh
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRL----SPGFIKEYIFPGGCLPSLGRVTSAMT 179 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~~~~~~~~l~ 179 (272)
+|++..++|++++++...+++++++.|||||++++.+...+......... ....+......++...+.+++.+ ++
T Consensus 251 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~-ll 329 (363)
T 3dp7_A 251 AVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIR-CI 329 (363)
T ss_dssp EEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHH-HH
T ss_pred EEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHH-HH
Confidence 99999999999988888999999999999999999887765543211000 00001111123345568888874 55
Q ss_pred cCCCcEEEEEEe
Q 024096 180 SSSGLCVEHLEN 191 (272)
Q Consensus 180 ~~~Gf~v~~~~~ 191 (272)
+++||+++++..
T Consensus 330 ~~AGf~~v~~~~ 341 (363)
T 3dp7_A 330 ENAGLEVEEIQD 341 (363)
T ss_dssp HTTTEEESCCCC
T ss_pred HHcCCeEEEEEe
Confidence 679999877654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-20 Score=158.02 Aligned_cols=121 Identities=17% Similarity=0.300 Sum_probs=103.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC--CCeEEEEcccCCCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ--DHIRFYLCDYRQLPK 98 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~--~~i~~~~~d~~~~~~ 98 (272)
..+..+++.+...++ +|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++. .+++++++|+.+++.
T Consensus 70 ~~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 70 SEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 345667777765544 9999999999999999987 789999999999999999998876532 479999999999887
Q ss_pred CCCccEEEEe-chhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 99 ANKYDRIISC-GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 99 ~~~fD~V~~~-~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
+++||+|++. .+++|+++++...+++++.++|||||++++..+..
T Consensus 148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 7899998864 67778876678999999999999999999987664
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=160.61 Aligned_cols=154 Identities=21% Similarity=0.202 Sum_probs=116.3
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHc-----C-C-CCCeEEEEcccCCC------
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREA-----G-L-QDHIRFYLCDYRQL------ 96 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~-----g-~-~~~i~~~~~d~~~~------ 96 (272)
..++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.+++++... | . ..+++++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 457899999999999999999987 5679999999999999999988754 3 2 25899999999886
Q ss_pred C-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHH
Q 024096 97 P-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVT 175 (272)
Q Consensus 97 ~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 175 (272)
+ ++++||+|++..+++|++ ++..+++++.++|||||++++.++.............. ..+........+.+++.
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 235 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLST--NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDP---ILYGECLGGALYLEDFR 235 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCH---HHHHTTCTTCCBHHHHH
T ss_pred CCCCCCEEEEEEccchhcCC--CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhH---HHhhcccccCCCHHHHH
Confidence 6 568999999999999995 56899999999999999999988765432211111110 11112223445677777
Q ss_pred HHhhcCCCcEEEEEEe
Q 024096 176 SAMTSSSGLCVEHLEN 191 (272)
Q Consensus 176 ~~l~~~~Gf~v~~~~~ 191 (272)
+ +++++||.++++.+
T Consensus 236 ~-ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 236 R-LVAEAGFRDVRLVS 250 (383)
T ss_dssp H-HHHHTTCCCEEEEE
T ss_pred H-HHHHCCCceEEEEe
Confidence 5 55569997665444
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=149.67 Aligned_cols=114 Identities=19% Similarity=0.256 Sum_probs=99.2
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANK 101 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~ 101 (272)
...+.+.++..++.+|||+|||+|.++..+++....+++|+|+|+.+++.++++.. ..++.++++|+.+++ ++++
T Consensus 33 ~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~ 108 (253)
T 3g5l_A 33 WHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDA 108 (253)
T ss_dssp HHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTTC
T ss_pred HHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCCC
Confidence 45566777777889999999999999999999733399999999999999998864 358999999999988 5789
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
||+|++..+++|+ +++..+++++.++|||||+++++...
T Consensus 109 fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 109 YNVVLSSLALHYI--ASFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp EEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eEEEEEchhhhhh--hhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9999999999999 56789999999999999999997543
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.3e-19 Score=153.65 Aligned_cols=167 Identities=14% Similarity=0.174 Sum_probs=130.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA 99 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~ 99 (272)
.....+++.++..++.+|||||||+|.++..+++. ++.+++++|+ +.+++.+++++...+++++++++.+|+.+.+.+
T Consensus 177 ~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 255 (359)
T 1x19_A 177 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP 255 (359)
T ss_dssp HHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC
T ss_pred hhHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC
Confidence 33467788888888899999999999999999998 6789999999 999999999999888877899999999887632
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcc-cCCCC----CCCHHHH
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYI-FPGGC----LPSLGRV 174 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~----~~~~~~~ 174 (272)
+ +|+|++..+++|+++++...+++++.++|||||++++.+...++...... ........ ..++. +.+.+++
T Consensus 256 ~-~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~t~~e~ 331 (359)
T 1x19_A 256 E-ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNF---DYLSHYILGAGMPFSVLGFKEQARY 331 (359)
T ss_dssp C-CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCH---HHHHHHGGGGGSSCCCCCCCCGGGH
T ss_pred C-CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchH---HHHHHHHHhcCCCCcccCCCCHHHH
Confidence 2 39999999999998877899999999999999999998877654311111 11111111 12122 3678888
Q ss_pred HHHhhcCCCcEEEEEEecC
Q 024096 175 TSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 175 ~~~l~~~~Gf~v~~~~~~~ 193 (272)
.+ +++++||+++++...+
T Consensus 332 ~~-ll~~aGf~~v~~~~~~ 349 (359)
T 1x19_A 332 KE-ILESLGYKDVTMVRKY 349 (359)
T ss_dssp HH-HHHHHTCEEEEEEEET
T ss_pred HH-HHHHCCCceEEEEecC
Confidence 75 4556999998877654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=148.98 Aligned_cols=147 Identities=20% Similarity=0.302 Sum_probs=115.5
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechhh
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIE 112 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~ 112 (272)
++.+|||+|||+|.++..+++....+++++|+|+.+++.++++....+ ..++.++++|+.+++ ++++||+|++..+++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 688999999999999999888755699999999999999999887654 246899999998887 556899999999999
Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEec
Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENI 192 (272)
Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~ 192 (272)
|++++....+++++.++|||||++++.+...+... .+.. . ......+.+++.+ +++++||+++.....
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~~----~-----~~~~~~~~~~~~~-~l~~aGf~~~~~~~~ 225 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV--ILDD----V-----DSSVCRDLDVVRR-IICSAGLSLLAEERQ 225 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE--EEET----T-----TTEEEEBHHHHHH-HHHHTTCCEEEEEEC
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcc--eecc----c-----CCcccCCHHHHHH-HHHHcCCeEEEeeec
Confidence 99877677999999999999999999887654310 0000 0 0111236667764 455699999888765
Q ss_pred C
Q 024096 193 G 193 (272)
Q Consensus 193 ~ 193 (272)
.
T Consensus 226 ~ 226 (241)
T 2ex4_A 226 E 226 (241)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=144.55 Aligned_cols=147 Identities=17% Similarity=0.248 Sum_probs=113.8
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272)
.++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++. ...++.++++|+.+++ ++++||+|++..++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 126 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFENEQFEAIMAINSL 126 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCTTCEEEEEEESCT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCCCCccEEEEcChH
Confidence 47889999999999999999997 889999999999999998774 2358999999999988 67899999999999
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhccc-CCCCCCCHHHHHHHhhcCCCcEEEEEE
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIF-PGGCLPSLGRVTSAMTSSSGLCVEHLE 190 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~l~~~~Gf~v~~~~ 190 (272)
+|+ .++..+++++.++|+|||++++.+......... ..+...+-. ......+..++. .+++++||++++..
T Consensus 127 ~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 127 EWT--EEPLRALNEIKRVLKSDGYACIAILGPTAKPRE-----NSYPRLYGKDVVCNTMMPWEFE-QLVKEQGFKVVDGI 198 (242)
T ss_dssp TSS--SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGG-----GGGGGGGTCCCSSCCCCHHHHH-HHHHHTTEEEEEEE
T ss_pred hhc--cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhh-----hhhhhhccccccccCCCHHHHH-HHHHHcCCEEEEee
Confidence 999 456899999999999999999987654332111 111111111 122345666776 45567999998877
Q ss_pred ec
Q 024096 191 NI 192 (272)
Q Consensus 191 ~~ 192 (272)
.+
T Consensus 199 ~~ 200 (242)
T 3l8d_A 199 GV 200 (242)
T ss_dssp EE
T ss_pred cc
Confidence 54
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-19 Score=145.94 Aligned_cols=158 Identities=16% Similarity=0.209 Sum_probs=117.4
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEEEcccCCCC-CCCCccEEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL----QDHIRFYLCDYRQLP-KANKYDRIIS 107 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~----~~~i~~~~~d~~~~~-~~~~fD~V~~ 107 (272)
.++.+|||+|||+|.++..+++. +.+++|+|+++.+++.++++....++ ..++.+.++|+.+++ ++++||+|++
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 47889999999999999999997 88999999999999999999877665 236899999999988 6789999999
Q ss_pred echhhccChh-hHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhh------hhccc---------CCCCCCCH
Q 024096 108 CGMIEHVGHD-YMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFI------KEYIF---------PGGCLPSL 171 (272)
Q Consensus 108 ~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~------~~~~~---------p~~~~~~~ 171 (272)
..+++|+++. ....+++++.++|||||++++.++................. ..+.. ......+.
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTE 187 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCH
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCH
Confidence 9999999643 34589999999999999999987764322110000000000 00000 00134577
Q ss_pred HHHHHHhhcCCCcEEEEEEec
Q 024096 172 GRVTSAMTSSSGLCVEHLENI 192 (272)
Q Consensus 172 ~~~~~~l~~~~Gf~v~~~~~~ 192 (272)
+++.+ +++++||+++.+...
T Consensus 188 ~~l~~-ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 188 KELVF-LLTDCRFEIDYFRVK 207 (235)
T ss_dssp HHHHH-HHHTTTEEEEEEEEE
T ss_pred HHHHH-HHHHcCCEEEEEEec
Confidence 88874 556799999887653
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-19 Score=153.86 Aligned_cols=166 Identities=14% Similarity=0.153 Sum_probs=128.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272)
...+++.++..+ .+|||+|||+|..+..+++. ++.+++++|+ +.+++.+++++...++.++++++.+|+.+ +.+++
T Consensus 157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~ 233 (334)
T 2ip2_A 157 FHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVPSN 233 (334)
T ss_dssp HHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCCSS
T ss_pred HHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCCCC
Confidence 456777777777 89999999999999999988 7889999999 99999999998877766789999999977 43368
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcC
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSS 181 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 181 (272)
||+|++..+++|+++++...+++++++.|+|||++++.+...++............ ......++...+.+++.+ ++++
T Consensus 234 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~e~~~-ll~~ 311 (334)
T 2ip2_A 234 GDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDV-HLFMACAGRHRTTEEVVD-LLGR 311 (334)
T ss_dssp CSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHH-HHHHHHSCCCCBHHHHHH-HHHH
T ss_pred CCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhh-HhHhhCCCcCCCHHHHHH-HHHH
Confidence 99999999999998877779999999999999999998877654321111100111 111112345567888874 5556
Q ss_pred CCcEEEEEEecC
Q 024096 182 SGLCVEHLENIG 193 (272)
Q Consensus 182 ~Gf~v~~~~~~~ 193 (272)
+||+++++...+
T Consensus 312 aGf~~~~~~~~~ 323 (334)
T 2ip2_A 312 GGFAVERIVDLP 323 (334)
T ss_dssp TTEEEEEEEEET
T ss_pred CCCceeEEEECC
Confidence 999998877653
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.6e-19 Score=146.09 Aligned_cols=145 Identities=18% Similarity=0.208 Sum_probs=110.5
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH----------c------CCCCCeEEEEcccC
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVRE----------A------GLQDHIRFYLCDYR 94 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~----------~------g~~~~i~~~~~d~~ 94 (272)
...++.+|||+|||+|..+..|++. |.+|+|+|+|+.+++.|+++... . ....+++++++|+.
T Consensus 65 ~~~~~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~ 143 (252)
T 2gb4_A 65 KGQSGLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143 (252)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred cCCCCCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence 3457889999999999999999997 88999999999999999776531 0 01247999999999
Q ss_pred CCCC-C-CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHH
Q 024096 95 QLPK-A-NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLG 172 (272)
Q Consensus 95 ~~~~-~-~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 172 (272)
+++. + ++||+|++..+++|++.++...+++++.++|||||++++.++....... . .|. ...+.+
T Consensus 144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~----------~---g~~-~~~~~~ 209 (252)
T 2gb4_A 144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH----------A---GPP-FYVPSA 209 (252)
T ss_dssp TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC----------C---CSS-CCCCHH
T ss_pred cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC----------C---CCC-CCCCHH
Confidence 9883 2 7999999999999998878889999999999999999866554322100 0 010 124667
Q ss_pred HHHHHhhcCCCcEEEEEEec
Q 024096 173 RVTSAMTSSSGLCVEHLENI 192 (272)
Q Consensus 173 ~~~~~l~~~~Gf~v~~~~~~ 192 (272)
++.+. .+. +|++...+..
T Consensus 210 el~~~-l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 210 ELKRL-FGT-KCSMQCLEEV 227 (252)
T ss_dssp HHHHH-HTT-TEEEEEEEEE
T ss_pred HHHHH-hhC-CeEEEEEecc
Confidence 77654 443 6999877654
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-19 Score=153.94 Aligned_cols=166 Identities=19% Similarity=0.279 Sum_probs=128.3
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKY 102 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~f 102 (272)
..+++.++..++.+|||+|||+|.++..+++. ++.+++++|+ +.+++.+++++...++.++++++.+|+.+..+ ..|
T Consensus 173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 250 (360)
T 1tw3_A 173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP-RKA 250 (360)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-SCE
T ss_pred HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC-CCc
Confidence 45667778888899999999999999999988 6789999999 99999999999988887799999999876222 359
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec-CCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcC
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS-APDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSS 181 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 181 (272)
|+|++..+++|+++++...+++++.++|||||++++.+.. .++........... +......++...+.+++.+ ++++
T Consensus 251 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~t~~e~~~-ll~~ 328 (360)
T 1tw3_A 251 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELD-LRMLVFLGGALRTREKWDG-LAAS 328 (360)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHH-HHHHHHHSCCCCBHHHHHH-HHHH
T ss_pred cEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhcc-HHHhhhcCCcCCCHHHHHH-HHHH
Confidence 9999999999998777779999999999999999998876 44321111100000 0111123456678888875 5556
Q ss_pred CCcEEEEEEecC
Q 024096 182 SGLCVEHLENIG 193 (272)
Q Consensus 182 ~Gf~v~~~~~~~ 193 (272)
+||+++++...+
T Consensus 329 aGf~~~~~~~~~ 340 (360)
T 1tw3_A 329 AGLVVEEVRQLP 340 (360)
T ss_dssp TTEEEEEEEEEE
T ss_pred CCCeEEEEEeCC
Confidence 999998877654
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=153.85 Aligned_cols=117 Identities=25% Similarity=0.351 Sum_probs=102.0
Q ss_pred HHHHHHHHc-CCCCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC
Q 024096 22 KVSVLIEKA-RVSKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK 98 (272)
Q Consensus 22 ~~~~l~~~l-~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 98 (272)
.+..+++.+ .+.++.+|||+|||+|.++..+++. + +.+++|+|+|+.+++.++++....+. +++++++|+.+.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~ 86 (284)
T 3gu3_A 9 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL 86 (284)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC
T ss_pred HHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCc
Confidence 345556555 5678899999999999999999987 4 58999999999999999999877653 89999999999886
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+++||+|++..+++|++ +...+++++.++|||||++++.++.
T Consensus 87 ~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 87 NDKYDIAICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp SSCEEEEEEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCeeEEEECChhhcCC--CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 67999999999999994 5589999999999999999987665
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=151.18 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=118.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KA 99 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~ 99 (272)
...+.+++.++..++.+|||+|||+|.++..+++ ++.+|+|+|+|+.+++.++++. +++++++|+.+++ ++
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~ 92 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALPD 92 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSCT
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCCC
Confidence 4567788888888899999999999999999998 5889999999999998876542 7999999999988 67
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhccc-CCCCCCCHHHHHHHh
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIF-PGGCLPSLGRVTSAM 178 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~l 178 (272)
++||+|++..+++|+ .++..+++++.++|| ||++++.++..+........ ..+..... ....+++.+++. +
T Consensus 93 ~~fD~v~~~~~l~~~--~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~ 164 (261)
T 3ege_A 93 KSVDGVISILAIHHF--SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLY---DYFPFLWEDALRFLPLDEQIN--L 164 (261)
T ss_dssp TCBSEEEEESCGGGC--SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGG---GTCHHHHHHHHTSCCHHHHHH--H
T ss_pred CCEeEEEEcchHhhc--cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHH---HHHHHHhhhhhhhCCCHHHHH--H
Confidence 899999999999999 567999999999999 99998877753221100000 11110000 012345556665 6
Q ss_pred hcCCCcEEEEEEec
Q 024096 179 TSSSGLCVEHLENI 192 (272)
Q Consensus 179 ~~~~Gf~v~~~~~~ 192 (272)
++++||.++.+..+
T Consensus 165 l~~aGF~~v~~~~~ 178 (261)
T 3ege_A 165 LQENTKRRVEAIPF 178 (261)
T ss_dssp HHHHHCSEEEEEEC
T ss_pred HHHcCCCceeEEEe
Confidence 66799988877775
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.7e-19 Score=153.92 Aligned_cols=162 Identities=11% Similarity=0.188 Sum_probs=121.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272)
...+++.+++.++.+|||||||+|..+..+++. ++.+++++|+ +.++. +++.+..++.++++++.+|+.+ +.+ +
T Consensus 173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~p-~ 247 (348)
T 3lst_A 173 HLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR-EVP-H 247 (348)
T ss_dssp HHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT-CCC-C
T ss_pred HHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC-CCC-C
Confidence 356778888888999999999999999999988 7889999999 44444 3333334555689999999962 322 8
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcC
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSS 181 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 181 (272)
||+|++..++||+++++...++++++++|||||++++.+...+............ +......++...+.+++.+ ++++
T Consensus 248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d-~~~~~~~~~~~~t~~e~~~-ll~~ 325 (348)
T 3lst_A 248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMD-FMMLAARTGQERTAAELEP-LFTA 325 (348)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHH-HHHHHTTSCCCCBHHHHHH-HHHH
T ss_pred CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcC-hhhhhcCCCcCCCHHHHHH-HHHH
Confidence 9999999999999887778999999999999999999888765542111110111 1112235566678888874 5557
Q ss_pred CCcEEEEEEe
Q 024096 182 SGLCVEHLEN 191 (272)
Q Consensus 182 ~Gf~v~~~~~ 191 (272)
+||+++++..
T Consensus 326 aGf~~~~~~~ 335 (348)
T 3lst_A 326 AGLRLDRVVG 335 (348)
T ss_dssp TTEEEEEEEE
T ss_pred CCCceEEEEE
Confidence 9999988876
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-20 Score=159.03 Aligned_cols=230 Identities=15% Similarity=0.147 Sum_probs=158.0
Q ss_pred CcccccccCCCCCCHHHH---HH----HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHH
Q 024096 1 MTYSCAIFKSEHEDLEVG---QM----RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLK 71 (272)
Q Consensus 1 ~~y~~~~~~~~~~~l~~a---q~----~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~ 71 (272)
|.|+++|++.....+..+ |. .....+++.+.+.++.+|||+|||+|.++..+++. . +.+|+|+|+|+.+++
T Consensus 35 ~~y~~~y~~~~~~~l~~~~f~q~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~ 114 (317)
T 1dl5_A 35 YPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICE 114 (317)
T ss_dssp CCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHH
T ss_pred hccccCccCCCcccccCCCcceeccCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHH
Confidence 457777776554244444 33 66788899999999999999999999999999987 3 467999999999999
Q ss_pred HHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCC--CCcc
Q 024096 72 YAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP--DQCY 148 (272)
Q Consensus 72 ~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~--~~~~ 148 (272)
.+++++...+++ ++++.++|+.+.+ ..++||+|++..+++|++ +++.+.|||||+++++..... ....
T Consensus 115 ~a~~~~~~~g~~-~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~~~~~~~~~ 185 (317)
T 1dl5_A 115 IAKRNVERLGIE-NVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINLKLSRRQPA 185 (317)
T ss_dssp HHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCBGGGTBCEE
T ss_pred HHHHHHHHcCCC-CeEEEECChhhccccCCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECCCCcccceE
Confidence 999999998885 5999999998855 457899999999999985 457889999999999855432 1111
Q ss_pred ccc-cCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHH-HHHhhHHHHHhccCChHHHHH
Q 024096 149 DEY-RLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRK-NFMGKQSEILALGFNEKFIRT 226 (272)
Q Consensus 149 ~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~ 226 (272)
..+ .....+..++++|.+.+|....+...+.+ ....+ .++ .|..+++.|+. +|.+........ + .++
T Consensus 186 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~-~~~~~---~~~--~y~~tl~~~~~~~f~~~~~~~~~~-~----~~~ 254 (317)
T 1dl5_A 186 FLFKKKDPYLVGNYKLETRFITAGGNLGNLLER-NRKLL---REF--PFNREILLVRSHIFVELVDLLTRR-L----TEI 254 (317)
T ss_dssp EEEEEETTEEEEEEEEECCCCBCCGGGSCHHHH-HHTTC---CCC--CEEEEEECTTHHHHHHHHHHHHSC-E----EEE
T ss_pred EEEEEeCCcEEEEEeccEEEEEccCcccccccc-chhhh---hcc--cchhhccCcchhhhhhhhhhhccc-c----Ccc
Confidence 111 11234667788888888776544321111 11100 111 14455667777 777666554322 2 245
Q ss_pred HH-HHHHHHHH--HHhcCCccEEEEEEEeC
Q 024096 227 WE-YYFDYCAA--SFKSRIIGDYQIVFSRP 253 (272)
Q Consensus 227 w~-~~~~~~~~--~f~~g~~~~~~~~~~k~ 253 (272)
|+ +|+..|++ +|..|. .++.++||
T Consensus 255 ~~~~yl~~~~~~~~F~~~~---~~v~~~~~ 281 (317)
T 1dl5_A 255 DGTFYYAGPNGVVEFLDDR---MRIYGDAP 281 (317)
T ss_dssp TTEEEEECSSEEEEEETTE---EEEEECCH
T ss_pred CceEEEECCCCeEEEeCCc---EEEEecHH
Confidence 65 55566644 576544 45566776
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-18 Score=140.81 Aligned_cols=123 Identities=20% Similarity=0.363 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC
Q 024096 15 LEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR 94 (272)
Q Consensus 15 l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~ 94 (272)
+.+......+.+.+.+ .++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++....+ .+++++++|+.
T Consensus 21 ~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~ 95 (227)
T 1ve3_A 21 YRSRIETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDAR 95 (227)
T ss_dssp HHHHHHHHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTT
T ss_pred HHHHHHHHHHHHHHhc--CCCCeEEEEeccCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchh
Confidence 3333333344444444 35789999999999999999987 5599999999999999999988776 57999999999
Q ss_pred CCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 95 QLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 95 ~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+++ ++++||+|++..++++....+...+++++.++|+|||++++.++.
T Consensus 96 ~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 96 KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp SCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 887 567999999999965555577889999999999999999998765
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=151.28 Aligned_cols=166 Identities=16% Similarity=0.117 Sum_probs=129.4
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKY 102 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~f 102 (272)
..+++.++..+..+|||||||+|..+..++++ ++.+++..|. |.+++.+++++...+ .++++++.+|+.+.+. ..+
T Consensus 169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~-~~~ 245 (353)
T 4a6d_A 169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL-PEA 245 (353)
T ss_dssp HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCC-CCC
T ss_pred HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCC-CCc
Confidence 45667777888899999999999999999998 8899999997 889999998876544 4699999999886543 458
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCC
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSS 182 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~ 182 (272)
|+|++..++|++++++...+++++++.|+|||+++|.+...++...........-+......++.-.+.+++. .+++++
T Consensus 246 D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~-~ll~~A 324 (353)
T 4a6d_A 246 DLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYH-MLLSSA 324 (353)
T ss_dssp SEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHH-HHHHHH
T ss_pred eEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHH-HHHHHC
Confidence 9999999999999988889999999999999999999988765432222111111222334456667888887 456679
Q ss_pred CcEEEEEEecC
Q 024096 183 GLCVEHLENIG 193 (272)
Q Consensus 183 Gf~v~~~~~~~ 193 (272)
||+++++...+
T Consensus 325 Gf~~v~v~~~~ 335 (353)
T 4a6d_A 325 GFRDFQFKKTG 335 (353)
T ss_dssp TCEEEEEECCS
T ss_pred CCceEEEEEcC
Confidence 99998887654
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=140.42 Aligned_cols=113 Identities=29% Similarity=0.386 Sum_probs=97.5
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEech
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGM 110 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~ 110 (272)
..++.+|||+|||+|..+..++...+.+++|+|+|+.+++.+++++...+ .++.+.++|+.+++ ++++||+|++..+
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPFKDESMSFVYSYGT 98 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCSCTTCEEEEEECSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCCCCCceeEEEEcCh
Confidence 35678999999999997544434457899999999999999999988766 37899999999988 5689999999999
Q ss_pred hhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCC
Q 024096 111 IEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272)
++|++.++...+++++.++|||||++++.++..++.
T Consensus 99 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 134 (209)
T 2p8j_A 99 IFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDE 134 (209)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTST
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccch
Confidence 999987788999999999999999999988876543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-18 Score=145.34 Aligned_cols=106 Identities=17% Similarity=0.259 Sum_probs=93.0
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEec-hh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCG-MI 111 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~-~~ 111 (272)
.++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++. .++.++++|+.+++.+++||+|++.. ++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~fD~v~~~~~~l 121 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRN------PDAVLHHGDMRDFSLGRRFSAVTCMFSSI 121 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTCCCSCCEEEEEECTTGG
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhC------CCCEEEECChHHCCccCCcCEEEEcCchh
Confidence 46689999999999999999987 779999999999999999874 27899999999988778999999998 99
Q ss_pred hccCh-hhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 112 EHVGH-DYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 112 ~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
+|+++ ++...+++++.++|||||++++..+..+.
T Consensus 122 ~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 156 (263)
T 3pfg_A 122 GHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPE 156 (263)
T ss_dssp GGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChh
Confidence 99964 46778999999999999999997654443
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-18 Score=144.52 Aligned_cols=116 Identities=17% Similarity=0.262 Sum_probs=102.9
Q ss_pred HHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccE
Q 024096 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDR 104 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~ 104 (272)
.+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ ++++.++|+.+.+.+++||+
T Consensus 111 ~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~ 187 (286)
T 3m70_A 111 DVVDAAKIISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQENYDF 187 (286)
T ss_dssp HHHHHHHHSCSCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCCCSCEEE
T ss_pred HHHHHhhccCCCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccccCCccE
Confidence 4444444457889999999999999999997 78999999999999999999998876 79999999998877789999
Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
|++..+++|+++++...+++++.++|+|||++++.....
T Consensus 188 i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 226 (286)
T 3m70_A 188 IVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMS 226 (286)
T ss_dssp EEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred EEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 999999999988888899999999999999988865543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-18 Score=144.86 Aligned_cols=109 Identities=18% Similarity=0.264 Sum_probs=96.1
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEcccCCCC-CC------C
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREA-GLQDHIRFYLCDYRQLP-KA------N 100 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~-g~~~~i~~~~~d~~~~~-~~------~ 100 (272)
...++.+|||+|||+|..+..+++. ++.+|+|+|+|+.+++.+++++... +...+++++++|+.+++ .+ +
T Consensus 33 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 112 (299)
T 3g5t_A 33 HDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQ 112 (299)
T ss_dssp CCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred hcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCC
Confidence 3467899999999999999999973 5789999999999999999999886 44568999999999987 44 7
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+||+|++..+++|+ ++..+++++.++|||||.+++..+.
T Consensus 113 ~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 113 KIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp CEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 99999999999999 5689999999999999999985544
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-18 Score=141.05 Aligned_cols=174 Identities=16% Similarity=0.234 Sum_probs=123.7
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC--C-CCC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL--P-KAN 100 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~--~-~~~ 100 (272)
..+++.+. .++.+|||+|||+|.++..+++. +.+++|+|+++.+++.++++. ..+.++|+.+. + +++
T Consensus 23 ~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~ 92 (230)
T 3cc8_A 23 PNLLKHIK-KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEE 92 (230)
T ss_dssp HHHHTTCC-TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTT
T ss_pred HHHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCC
Confidence 44556655 67889999999999999999987 789999999999999888652 37899998873 3 457
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCcc-cc-ccCcchhh-hhccc-CCCCCCCHHHHHH
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCY-DE-YRLSPGFI-KEYIF-PGGCLPSLGRVTS 176 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~-~~~~~~~~-~~~~~-p~~~~~~~~~~~~ 176 (272)
+||+|++..+++|++ +...+++++.++|+|||++++..+....... .. ........ ..... ......+.+++.+
T Consensus 93 ~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (230)
T 3cc8_A 93 QFDCVIFGDVLEHLF--DPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLR 170 (230)
T ss_dssp CEEEEEEESCGGGSS--CHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHH
T ss_pred ccCEEEECChhhhcC--CHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHH
Confidence 899999999999995 4589999999999999999997655322100 00 00000000 00000 1123467777774
Q ss_pred HhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhH
Q 024096 177 AMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQ 211 (272)
Q Consensus 177 ~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (272)
+++++||+++++......+ .....|..++....
T Consensus 171 -~l~~~Gf~~~~~~~~~~~~-~~~~~~~~~l~~~~ 203 (230)
T 3cc8_A 171 -MFLKAGYSISKVDRVYVDH-KMYEPLIEELYGIC 203 (230)
T ss_dssp -HHHHTTEEEEEEEEEECCC-GGGHHHHHHHHHHH
T ss_pred -HHHHcCCeEEEEEecccCh-hhccchHHHHHHHH
Confidence 5556999999988877665 55666776665433
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=135.85 Aligned_cols=142 Identities=16% Similarity=0.110 Sum_probs=112.7
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKY 102 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~f 102 (272)
+.+++.+...++.+|||+|||+|.++..+++.. .+++|+|+++.+++.++++ .+++.+..+| .+ ++++|
T Consensus 7 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d---~~~~~~~~ 76 (170)
T 3i9f_A 7 EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEK------FDSVITLSDP---KEIPDNSV 76 (170)
T ss_dssp TTTHHHHHSSCCEEEEEETCTTCTTHHHHHTTE-EEEEEECSCHHHHHHHHHH------CTTSEEESSG---GGSCTTCE
T ss_pred HHHHHhcCcCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC---CCCCCCce
Confidence 345666677888999999999999999999874 4999999999999999887 2479999999 34 56799
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCC
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSS 182 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~ 182 (272)
|+|++..+++|+ .+...+++++.++|||||++++.++......... +.....+.+++.+ +++
T Consensus 77 D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~l~-- 138 (170)
T 3i9f_A 77 DFILFANSFHDM--DDKQHVISEVKRILKDDGRVIIIDWRKENTGIGP-------------PLSIRMDEKDYMG-WFS-- 138 (170)
T ss_dssp EEEEEESCSTTC--SCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS-------------CGGGCCCHHHHHH-HTT--
T ss_pred EEEEEccchhcc--cCHHHHHHHHHHhcCCCCEEEEEEcCccccccCc-------------hHhhhcCHHHHHH-HHh--
Confidence 999999999999 4568999999999999999999887644322110 1112346777764 444
Q ss_pred CcEEEEEEecC
Q 024096 183 GLCVEHLENIG 193 (272)
Q Consensus 183 Gf~v~~~~~~~ 193 (272)
||++.+....+
T Consensus 139 Gf~~~~~~~~~ 149 (170)
T 3i9f_A 139 NFVVEKRFNPT 149 (170)
T ss_dssp TEEEEEEECSS
T ss_pred CcEEEEccCCC
Confidence 99999888765
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-19 Score=150.01 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=93.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KAN 100 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~ 100 (272)
.++.+.+..+ .+.+|||||||+|..+..|++. +.+|+|+|+|+.|++.|++. .++.++++|+++++ +++
T Consensus 29 l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~~~~ 98 (257)
T 4hg2_A 29 LFRWLGEVAP--ARGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGLPPA 98 (257)
T ss_dssp HHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCCCSS
T ss_pred HHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcccCC
Confidence 3455555543 4579999999999999999986 78999999999999887642 48999999999999 778
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
+||+|++..++||++ ...+++++.|+|||||+|++..+..+.
T Consensus 99 sfD~v~~~~~~h~~~---~~~~~~e~~rvLkpgG~l~~~~~~~~~ 140 (257)
T 4hg2_A 99 SVDVAIAAQAMHWFD---LDRFWAELRRVARPGAVFAAVTYGLTR 140 (257)
T ss_dssp CEEEEEECSCCTTCC---HHHHHHHHHHHEEEEEEEEEEEECCCB
T ss_pred cccEEEEeeehhHhh---HHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence 999999999998884 468999999999999999997766443
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=139.84 Aligned_cols=129 Identities=21% Similarity=0.238 Sum_probs=106.0
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272)
+.++.+|||+|||+|.++..+++.+..+++|+|+++.+++.+++++...++.+ +++.++|+.+.. +++||+|++..++
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~~fD~i~~~~~~ 135 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV-DGKFDLIVANILA 135 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC-CSCEEEEEEESCH
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC-CCCceEEEECCcH
Confidence 45788999999999999999988655699999999999999999999888754 999999997754 4789999999887
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEe
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLEN 191 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~ 191 (272)
+++ ..+++++.++|+|||++++.++... ...++. .+.+++||.+..+..
T Consensus 136 ~~~-----~~~l~~~~~~L~~gG~l~~~~~~~~-------------------------~~~~~~-~~~~~~Gf~~~~~~~ 184 (205)
T 3grz_A 136 EIL-----LDLIPQLDSHLNEDGQVIFSGIDYL-------------------------QLPKIE-QALAENSFQIDLKMR 184 (205)
T ss_dssp HHH-----HHHGGGSGGGEEEEEEEEEEEEEGG-------------------------GHHHHH-HHHHHTTEEEEEEEE
T ss_pred HHH-----HHHHHHHHHhcCCCCEEEEEecCcc-------------------------cHHHHH-HHHHHcCCceEEeec
Confidence 765 7899999999999999999655411 233444 344569999988766
Q ss_pred cC
Q 024096 192 IG 193 (272)
Q Consensus 192 ~~ 193 (272)
.+
T Consensus 185 ~~ 186 (205)
T 3grz_A 185 AG 186 (205)
T ss_dssp ET
T ss_pred cC
Confidence 54
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-20 Score=149.74 Aligned_cols=178 Identities=13% Similarity=0.160 Sum_probs=118.1
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHH----HHcCCCCCeEEEEcccCCCC-CC
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKV----REAGLQDHIRFYLCDYRQLP-KA 99 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~----~~~g~~~~i~~~~~d~~~~~-~~ 99 (272)
.++.+...++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.+.+.+ ...++ +++.++++|+.+++ .+
T Consensus 19 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~ 97 (218)
T 3mq2_A 19 EFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLS 97 (218)
T ss_dssp HHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCC
T ss_pred HHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCC
Confidence 445556778899999999999999999998 5889999999999887643333 33455 38999999999988 44
Q ss_pred CCccEEEEec---hh--hccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHH
Q 024096 100 NKYDRIISCG---MI--EHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRV 174 (272)
Q Consensus 100 ~~fD~V~~~~---~~--~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 174 (272)
+. |.|+... .. +|++ +...+++++.++|||||+++++........ ....... .|........+.
T Consensus 98 ~~-d~v~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~ 166 (218)
T 3mq2_A 98 GV-GELHVLMPWGSLLRGVLG--SSPEMLRGMAAVCRPGASFLVALNLHAWRP------SVPEVGE--HPEPTPDSADEW 166 (218)
T ss_dssp CE-EEEEEESCCHHHHHHHHT--SSSHHHHHHHHTEEEEEEEEEEEEGGGBTT------BCGGGTT--CCCCCHHHHHHH
T ss_pred CC-CEEEEEccchhhhhhhhc--cHHHHHHHHHHHcCCCcEEEEEeccccccc------ccccccc--CCccchHHHHHH
Confidence 44 7766433 22 2553 337899999999999999998543211100 0000110 010000012222
Q ss_pred HHHhhcCCCcEEEEEEecCccHHHHH-HHHHHHHHhhHHHHH
Q 024096 175 TSAMTSSSGLCVEHLENIGIHYYQTL-RCWRKNFMGKQSEIL 215 (272)
Q Consensus 175 ~~~l~~~~Gf~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 215 (272)
+..+++++||++.+++.+..++...+ ..|.+++...++++.
T Consensus 167 l~~~l~~aGf~i~~~~~~~~~~~~~~~~~w~~~~~~~r~~~~ 208 (218)
T 3mq2_A 167 LAPRYAEAGWKLADCRYLEPEEVAGLETSWTRRLHSSRDRFD 208 (218)
T ss_dssp HHHHHHHTTEEEEEEEEECHHHHHHTCCTHHHHHTTCCSSCS
T ss_pred HHHHHHHcCCCceeeeccchhhhhhhHHHHHHHHccccccee
Confidence 33456679999999999887766443 678888765554443
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.7e-19 Score=148.06 Aligned_cols=151 Identities=18% Similarity=0.161 Sum_probs=108.4
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCC---------------------------
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGL--------------------------- 82 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~--------------------------- 82 (272)
+..++.+|||||||+|.++..++.. +. +|+|+|+|+.+++.|+++++....
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 4567889999999999887776664 43 799999999999999987754310
Q ss_pred -CCCeE-EEEcccCCC-C----CCCCccEEEEechhhccC--hhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccC
Q 024096 83 -QDHIR-FYLCDYRQL-P----KANKYDRIISCGMIEHVG--HDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRL 153 (272)
Q Consensus 83 -~~~i~-~~~~d~~~~-~----~~~~fD~V~~~~~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 153 (272)
..++. ++++|+.+. + ..++||+|++..+++|+. .+++..++++++++|||||+++++....... +.
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-~~---- 205 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-YM---- 205 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-EE----
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-ce----
Confidence 01244 899998874 2 246899999999999963 2567889999999999999999986542211 10
Q ss_pred cchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecC
Q 024096 154 SPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 154 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272)
.....++ ....+.+++.+. ++++||.++++....
T Consensus 206 ----~g~~~~~-~~~~~~~~l~~~-l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 206 ----VGKREFS-CVALEKGEVEQA-VLDAGFDIEQLLHSP 239 (263)
T ss_dssp ----ETTEEEE-CCCCCHHHHHHH-HHHTTEEEEEEEEEC
T ss_pred ----eCCeEee-ccccCHHHHHHH-HHHCCCEEEEEeecc
Confidence 0001111 123467777754 456999999887764
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=140.61 Aligned_cols=115 Identities=19% Similarity=0.228 Sum_probs=99.6
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272)
..+...+...++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++.... .+++++++|+.+++++++||
T Consensus 41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~fD 116 (216)
T 3ofk_A 41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTKRW---SHISWAATDILQFSTAELFD 116 (216)
T ss_dssp HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHHHHHHHHTTTC---SSEEEEECCTTTCCCSCCEE
T ss_pred HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcccC---CCeEEEEcchhhCCCCCCcc
Confidence 33444566778899999999999999999987 579999999999999999987654 37999999999988778999
Q ss_pred EEEEechhhccCh-hhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 104 RIISCGMIEHVGH-DYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 104 ~V~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+|++..+++|+++ +....+++++.++|||||++++.+..
T Consensus 117 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 117 LIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp EEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 9999999999975 45568899999999999999997654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=148.81 Aligned_cols=116 Identities=21% Similarity=0.377 Sum_probs=94.7
Q ss_pred HHHHHcCC--CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCC-------------------
Q 024096 25 VLIEKARV--SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGL------------------- 82 (272)
Q Consensus 25 ~l~~~l~~--~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~------------------- 82 (272)
.+++.+.. .++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|++++...+.
T Consensus 35 ~~l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (292)
T 3g07_A 35 GRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGE 114 (292)
T ss_dssp GGGGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------
T ss_pred HHHHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccc
Confidence 34444443 36889999999999999999998 678999999999999999998765432
Q ss_pred --------------------------------------CCCeEEEEcccCCCC------CCCCccEEEEechhhcc----
Q 024096 83 --------------------------------------QDHIRFYLCDYRQLP------KANKYDRIISCGMIEHV---- 114 (272)
Q Consensus 83 --------------------------------------~~~i~~~~~d~~~~~------~~~~fD~V~~~~~~~~~---- 114 (272)
+.+++++++|+...+ ..++||+|++..+++|+
T Consensus 115 ~~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~ 194 (292)
T 3g07_A 115 EGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNW 194 (292)
T ss_dssp ---------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHH
T ss_pred cccccccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcC
Confidence 258999999988654 46899999999999887
Q ss_pred ChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 115 GHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 115 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+++.+..++++++++|+|||++++..
T Consensus 195 ~~~~~~~~l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 195 GDEGLKRMFRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 55578899999999999999999853
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-18 Score=141.88 Aligned_cols=111 Identities=22% Similarity=0.304 Sum_probs=97.1
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANK 101 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~ 101 (272)
..+.+.+...++.+|||+|||+|.++..+++. +. +++|+|+|+.+++.++++... .++.+.++|+.+++ ++++
T Consensus 33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~ 107 (243)
T 3bkw_A 33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDS 107 (243)
T ss_dssp HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTC
T ss_pred HHHHHhccccCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCC
Confidence 34667777778899999999999999999987 55 999999999999999887532 37999999999887 5689
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
||+|++..+++|++ +...+++++.++|||||++++...
T Consensus 108 fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 108 FDLAYSSLALHYVE--DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp EEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceEEEEeccccccc--hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 99999999999994 568999999999999999999764
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-17 Score=138.61 Aligned_cols=105 Identities=26% Similarity=0.370 Sum_probs=94.3
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEec-hhh
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCG-MIE 112 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~-~~~ 112 (272)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++....+. ++.++++|+.+++..++||+|++.. +++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCccCCceEEEEcCcccc
Confidence 6789999999999999999987 78999999999999999999887764 7899999999887448999999998 999
Q ss_pred ccCh-hhHHHHHHHHHhcCccCcEEEEEee
Q 024096 113 HVGH-DYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 113 ~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
|++. ++...+++++.++|||||++++...
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 9943 5778999999999999999998544
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-18 Score=136.06 Aligned_cols=151 Identities=18% Similarity=0.206 Sum_probs=115.6
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANK 101 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~ 101 (272)
+..++..+ .++ +|||+|||+|.++..+++. +.+++|+|+|+.+++.++++....+. ++.+.++|+.+.+ ++++
T Consensus 21 l~~~~~~~--~~~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~ 94 (202)
T 2kw5_A 21 LVSVANQI--PQG-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADA 94 (202)
T ss_dssp HHHHHHHS--CSS-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTT
T ss_pred HHHHHHhC--CCC-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCC
Confidence 34445544 456 9999999999999999986 78999999999999999999987765 7999999999887 5689
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcC
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSS 181 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 181 (272)
||+|++. +.|++.++...+++++.++|||||++++.++......+.. . .........+.+++.+ +++
T Consensus 95 fD~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---~------~~~~~~~~~~~~~l~~-~l~- 161 (202)
T 2kw5_A 95 WEGIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNT---G------GPKDLDLLPKLETLQS-ELP- 161 (202)
T ss_dssp CSEEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTS---C------CSSSGGGCCCHHHHHH-HCS-
T ss_pred ccEEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCC---C------CCCcceeecCHHHHHH-Hhc-
Confidence 9999995 4566667789999999999999999999877643322100 0 0001123567888874 444
Q ss_pred CCcEEEEEEecC
Q 024096 182 SGLCVEHLENIG 193 (272)
Q Consensus 182 ~Gf~v~~~~~~~ 193 (272)
||+++.++...
T Consensus 162 -Gf~v~~~~~~~ 172 (202)
T 2kw5_A 162 -SLNWLIANNLE 172 (202)
T ss_dssp -SSCEEEEEEEE
T ss_pred -CceEEEEEEEE
Confidence 99998877754
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.5e-18 Score=145.47 Aligned_cols=119 Identities=15% Similarity=0.136 Sum_probs=96.4
Q ss_pred HHHHHHcC--CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcC------CCCCeEEEEcccCC
Q 024096 24 SVLIEKAR--VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAG------LQDHIRFYLCDYRQ 95 (272)
Q Consensus 24 ~~l~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g------~~~~i~~~~~d~~~ 95 (272)
..+++.+. ..++.+|||+|||+|.++..+++.++.+++|+|+|+.+++.++++....+ ...++.++++|+.+
T Consensus 22 ~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 101 (313)
T 3bgv_A 22 GEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSK 101 (313)
T ss_dssp HHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTT
T ss_pred HHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccc
Confidence 44444443 23778999999999999999988667799999999999999999887542 12379999999988
Q ss_pred CC-------CCCCccEEEEechhhcc--ChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 96 LP-------KANKYDRIISCGMIEHV--GHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 96 ~~-------~~~~fD~V~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
.+ ++++||+|++..+++|+ +.++...+++++.++|||||+++++.+.
T Consensus 102 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 102 ELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp SCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 64 24589999999999987 3356789999999999999999997764
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-19 Score=160.50 Aligned_cols=173 Identities=16% Similarity=0.183 Sum_probs=125.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCe
Q 024096 7 IFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHI 86 (272)
Q Consensus 7 ~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i 86 (272)
++......+.+......+.+++.+.+.++.+|||||||+|.++..+++. +.+++|+|+|+.+++.++++ +.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~~~a~~~----~~~~~~ 154 (416)
T 4e2x_A 80 YHSSGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVAAKAREK----GIRVRT 154 (416)
T ss_dssp CCGGGCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHHHHHHTT----TCCEEC
T ss_pred CcCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHHHHHHHc----CCCcce
Confidence 3334445677788888899999999889999999999999999999986 77999999999999998876 332111
Q ss_pred E-EEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccC
Q 024096 87 R-FYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFP 164 (272)
Q Consensus 87 ~-~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p 164 (272)
. +...+...++ ++++||+|++..+++|++ ++..++++++++|||||++++..+...... .... +.....+
T Consensus 155 ~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-----~~~~-~~~~~~~ 226 (416)
T 4e2x_A 155 DFFEKATADDVRRTEGPANVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDPYLGDIV-----AKTS-FDQIFDE 226 (416)
T ss_dssp SCCSHHHHHHHHHHHCCEEEEEEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEECHHHHH-----HHTC-GGGCSTT
T ss_pred eeechhhHhhcccCCCCEEEEEECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeCChHHhh-----hhcc-hhhhhhh
Confidence 1 2223344444 458999999999999994 679999999999999999999765421100 0001 1111123
Q ss_pred CCCCCCHHHHHHHhhcCCCcEEEEEEecC
Q 024096 165 GGCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 165 ~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272)
+..+.+.+++. .+++++||++.++..+.
T Consensus 227 ~~~~~s~~~l~-~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 227 HFFLFSATSVQ-GMAQRCGFELVDVQRLP 254 (416)
T ss_dssp CCEECCHHHHH-HHHHHTTEEEEEEEEEC
T ss_pred hhhcCCHHHHH-HHHHHcCCEEEEEEEcc
Confidence 33456777776 45567999999888754
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=134.65 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=96.8
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-CCCCCc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-PKANKY 102 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~~~~~f 102 (272)
..+++.+.+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|+++++..+++++++++++|+.+. +..+.|
T Consensus 45 ~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 45 ALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 45777888889999999999999999999998 8899999999999999999999999876899999999884 444689
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
|+|++...+ +.. +++++.++|||||++++....
T Consensus 124 D~v~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 124 EAVFIGGGG------SQA-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp SEEEECSCC------CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred CEEEECCcc------cHH-HHHHHHHhcCCCcEEEEEecC
Confidence 999987643 235 999999999999999986543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=140.95 Aligned_cols=156 Identities=20% Similarity=0.251 Sum_probs=112.9
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC---C--C
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL---P--K 98 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~---~--~ 98 (272)
..+++.+...++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++ .++.+..+|+.++ + .
T Consensus 42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~ 113 (227)
T 3e8s_A 42 QAILLAILGRQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPV 113 (227)
T ss_dssp HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCC
T ss_pred HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhccccccc
Confidence 44566666667799999999999999999987 88999999999999999877 3678888888776 3 4
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCc---chhh---hhcccCCCCCCCHH
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLS---PGFI---KEYIFPGGCLPSLG 172 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~---~~~~---~~~~~p~~~~~~~~ 172 (272)
..+||+|++..+++ . .++..+++++.++|||||++++.++.........+... ..+. .........+.+.+
T Consensus 114 ~~~fD~v~~~~~l~-~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (227)
T 3e8s_A 114 GKDYDLICANFALL-H--QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLA 190 (227)
T ss_dssp CCCEEEEEEESCCC-S--SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHH
T ss_pred CCCccEEEECchhh-h--hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHH
Confidence 45699999999998 4 45689999999999999999998765433221111000 0000 00000011235788
Q ss_pred HHHHHhhcCCCcEEEEEEe
Q 024096 173 RVTSAMTSSSGLCVEHLEN 191 (272)
Q Consensus 173 ~~~~~l~~~~Gf~v~~~~~ 191 (272)
++.+ +++++||.++++..
T Consensus 191 ~~~~-~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 191 SWLN-ALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHH-HHHHTTEEEEEEEC
T ss_pred HHHH-HHHHcCCeEEEEec
Confidence 8875 45569999998876
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-17 Score=132.91 Aligned_cols=114 Identities=17% Similarity=0.221 Sum_probs=99.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CC
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KA 99 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~ 99 (272)
....+++.+.+.++.+|||+|||+|.++..+++. +..+++++|+|+.+++.+++++...++ ++++++++|+.+.. ..
T Consensus 28 i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~ 106 (204)
T 3e05_A 28 VRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDDL 106 (204)
T ss_dssp HHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTTS
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhcC
Confidence 3356788888999999999999999999999998 568999999999999999999998888 58999999996655 44
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
++||+|++..+++ +...+++++.++|||||++++...
T Consensus 107 ~~~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 107 PDPDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp CCCSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCCCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 7899999987765 347999999999999999998644
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.4e-18 Score=147.72 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=120.1
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 23 VSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 23 ~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
...+++.++ +.++.+|||||||+|.++..+++. ++.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.
T Consensus 191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p~ 261 (368)
T 3reo_A 191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GVPK 261 (368)
T ss_dssp HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCC
T ss_pred HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CCCC
Confidence 345666666 677899999999999999999998 7889999999 8888776532 489999999886 4223
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccC----cchhhhhcccCCCCCCCHHHHHH
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRL----SPGFIKEYIFPGGCLPSLGRVTS 176 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~~~~~~~ 176 (272)
. |+|++..++||+++++...++++++++|||||++++.+...+......... ..........+++...+.+++.+
T Consensus 262 ~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ 340 (368)
T 3reo_A 262 G-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQA 340 (368)
T ss_dssp C-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHH
T ss_pred C-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHH
Confidence 3 999999999999988888999999999999999999988866542211000 00111111124566678888874
Q ss_pred HhhcCCCcEEEEEEecC
Q 024096 177 AMTSSSGLCVEHLENIG 193 (272)
Q Consensus 177 ~l~~~~Gf~v~~~~~~~ 193 (272)
+++++||+++++....
T Consensus 341 -ll~~AGF~~v~~~~~~ 356 (368)
T 3reo_A 341 -LAMASGFRGFKVASCA 356 (368)
T ss_dssp -HHHHTTCCEEEEEEEE
T ss_pred -HHHHCCCeeeEEEEeC
Confidence 5567999998877653
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=146.65 Aligned_cols=160 Identities=16% Similarity=0.103 Sum_probs=121.5
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 23 VSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 23 ~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
...+++.++ ..++.+|||||||+|..+..++++ ++.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.
T Consensus 189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~ 259 (364)
T 3p9c_A 189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK-EVPS 259 (364)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCC
T ss_pred HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC-CCCC
Confidence 355677776 778899999999999999999988 7889999999 8887776542 489999999987 5223
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccC-cchhh--hhc-ccCCCCCCCHHHHHH
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRL-SPGFI--KEY-IFPGGCLPSLGRVTS 176 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-~~~~~--~~~-~~p~~~~~~~~~~~~ 176 (272)
. |+|++..++|++++++...++++++++|||||++++.+...++........ ....+ ... ..+++...+.+++.+
T Consensus 260 ~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ 338 (364)
T 3p9c_A 260 G-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQA 338 (364)
T ss_dssp C-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHH
T ss_pred C-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHH
Confidence 3 999999999999988888999999999999999999988866542211100 00011 111 235566678888874
Q ss_pred HhhcCCCcEEEEEEecC
Q 024096 177 AMTSSSGLCVEHLENIG 193 (272)
Q Consensus 177 ~l~~~~Gf~v~~~~~~~ 193 (272)
+++++||+++++....
T Consensus 339 -ll~~AGF~~v~~~~~~ 354 (364)
T 3p9c_A 339 -LARGAGFTGVKSTYIY 354 (364)
T ss_dssp -HHHHTTCCEEEEEEEE
T ss_pred -HHHHCCCceEEEEEcC
Confidence 5567999998877654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-19 Score=147.29 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=106.7
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCC-HHHHHHH---HHHHHHcCCCCCeEEEEcccCCCCC--CCCccEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLS-EEQLKYA---EIKVREAGLQDHIRFYLCDYRQLPK--ANKYDRI 105 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s-~~~~~~a---~~~~~~~g~~~~i~~~~~d~~~~~~--~~~fD~V 105 (272)
.++.+|||||||+|.++..+++. ++.+|+|+|+| +.+++.| ++++...+++ ++.++++|+.+++. .+.+|.|
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhccCeEEEE
Confidence 57889999999999999999976 78899999999 6666665 7777777774 79999999999862 2445555
Q ss_pred EEechhhccC---hhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHH-----HHHHH
Q 024096 106 ISCGMIEHVG---HDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLG-----RVTSA 177 (272)
Q Consensus 106 ~~~~~~~~~~---~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-----~~~~~ 177 (272)
.++....+.. ..+...++++++++|||||++++....... +.... ..... . ..++.. ++. .
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~--~~~~~---~~~~~--~---~~~~~~~~~~~el~-~ 170 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDS--YEEAE---IKKRG--L---PLLSKAYFLSEQYK-A 170 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC------------------------CCHHHHHSHHHH-H
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEecccc--chhch---hhhcC--C---CCCChhhcchHHHH-H
Confidence 5543322110 012256899999999999999984322211 11000 00000 0 111211 244 4
Q ss_pred hhcCCCcEEEEEEecCccHHHHH-HHHHHHH
Q 024096 178 MTSSSGLCVEHLENIGIHYYQTL-RCWRKNF 207 (272)
Q Consensus 178 l~~~~Gf~v~~~~~~~~~~~~~~-~~~~~~~ 207 (272)
+.+++||++...+.++.+|..++ ..|..++
T Consensus 171 ~l~~aGf~v~~~~~~~~~~~~~~~~~w~~~~ 201 (225)
T 3p2e_A 171 ELSNSGFRIDDVKELDNEYVKQFNSLWAKRL 201 (225)
T ss_dssp HHHHHTCEEEEEEEECHHHHTTCCSHHHHHH
T ss_pred HHHHcCCCeeeeeecCHHHHHHHHHHHhccc
Confidence 55569999999999998887665 4565554
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.3e-18 Score=133.98 Aligned_cols=110 Identities=14% Similarity=0.048 Sum_probs=90.7
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEe
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISC 108 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~ 108 (272)
.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++ +++++++.+...++ .+++||+|+++
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 4568899999999999999999997 88999999999999999999999888 68999998887754 45789999987
Q ss_pred chhhcc-------ChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 109 GMIEHV-------GHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 109 ~~~~~~-------~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
....+. ..+....+++++.++|||||++++..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 322211 1245568899999999999999997654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-18 Score=145.70 Aligned_cols=164 Identities=20% Similarity=0.101 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHcCC--CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc----------------
Q 024096 19 QMRKVSVLIEKARV--SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA---------------- 80 (272)
Q Consensus 19 q~~~~~~l~~~l~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~---------------- 80 (272)
+...+..+.+.+.. .++.+|||||||+|..+..++...+.+|+|+|+|+.+++.|+++++..
T Consensus 54 ~~~~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~ 133 (289)
T 2g72_A 54 GPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLI 133 (289)
T ss_dssp HHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHh
Confidence 33334455555432 367899999999999555444435779999999999999998865421
Q ss_pred -CCC------------CCeEEEEcccCC-CC------CCCCccEEEEechhhccCh--hhHHHHHHHHHhcCccCcEEEE
Q 024096 81 -GLQ------------DHIRFYLCDYRQ-LP------KANKYDRIISCGMIEHVGH--DYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 81 -g~~------------~~i~~~~~d~~~-~~------~~~~fD~V~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+.. ..+.++++|+.+ .+ ++++||+|++..+++|++. +++..+++++.++|||||++++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~ 213 (289)
T 2g72_A 134 EGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL 213 (289)
T ss_dssp HCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 100 015678889887 43 2356999999999999543 4789999999999999999999
Q ss_pred EeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecC
Q 024096 139 QFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272)
........ +. . ....+ .....+.+++.+. ++++||.++.+....
T Consensus 214 ~~~~~~~~-~~-~-------~~~~~-~~~~~~~~~l~~~-l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 214 IGALEESW-YL-A-------GEARL-TVVPVSEEEVREA-LVRSGYKVRDLRTYI 257 (289)
T ss_dssp EEEESCCE-EE-E-------TTEEE-ECCCCCHHHHHHH-HHHTTEEEEEEEEEE
T ss_pred EEecCcce-EE-c-------CCeee-eeccCCHHHHHHH-HHHcCCeEEEeeEee
Confidence 75432111 00 0 00000 0234577777754 456999998887765
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-17 Score=140.36 Aligned_cols=107 Identities=13% Similarity=0.216 Sum_probs=92.8
Q ss_pred HHHcCCCCCCEEEEECCCchHHH-HHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE
Q 024096 27 IEKARVSKGQEVLDIGCGWGTLA-IEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRI 105 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~-~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V 105 (272)
...+.+.++++|||||||+|.++ ..+++.++++|+|+|+|+.+++.|+++++..|+ ++++++++|+.+++ +++||+|
T Consensus 115 ~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~-d~~FDvV 192 (298)
T 3fpf_A 115 AALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID-GLEFDVL 192 (298)
T ss_dssp HHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG-GCCCSEE
T ss_pred HHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC-CCCcCEE
Confidence 35678899999999999999766 445554789999999999999999999999898 79999999999886 6889999
Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
++... + .+...+++++.++|||||++++..
T Consensus 193 ~~~a~---~--~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 193 MVAAL---A--EPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp EECTT---C--SCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EECCC---c--cCHHHHHHHHHHHcCCCcEEEEEc
Confidence 98654 3 455899999999999999999865
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-17 Score=138.52 Aligned_cols=163 Identities=10% Similarity=0.128 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHcC-CCCCCEEEEECCCc---hHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 024096 17 VGQMRKVSVLIEKAR-VSKGQEVLDIGCGW---GTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC 91 (272)
Q Consensus 17 ~aq~~~~~~l~~~l~-~~~~~~vLDiG~G~---G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~ 91 (272)
..++..+..+++.+. ..+..+|||||||+ |.++..+.+. ++.+|+++|+|+.+++.+++++.. .++++++++
T Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~ 135 (274)
T 2qe6_A 59 IENRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTA 135 (274)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEEC
T ss_pred HHHhHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEe
Confidence 445555666666665 33458999999999 9888776665 788999999999999999998743 258999999
Q ss_pred ccCCCC------------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhh
Q 024096 92 DYRQLP------------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIK 159 (272)
Q Consensus 92 d~~~~~------------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 159 (272)
|+.+.+ +.++||+|++..++||+++++...+++++.++|+|||+|++++..... ..........+.
T Consensus 136 D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~--~~~~~~~~~~~~ 213 (274)
T 2qe6_A 136 DVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG--LPAQQKLARITR 213 (274)
T ss_dssp CTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS--CHHHHHHHHHHH
T ss_pred eCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc--hHHHHHHHHHHH
Confidence 997631 124899999999999998777899999999999999999998877432 111111111111
Q ss_pred hcccCCCCCCCHHHHHHHhhcCCCcEEEE
Q 024096 160 EYIFPGGCLPSLGRVTSAMTSSSGLCVEH 188 (272)
Q Consensus 160 ~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~ 188 (272)
... ......+.+++.+. . .||++++
T Consensus 214 ~~~-~~~~~~s~~ei~~~-l--~G~~l~~ 238 (274)
T 2qe6_A 214 ENL-GEGWARTPEEIERQ-F--GDFELVE 238 (274)
T ss_dssp HHH-SCCCCBCHHHHHHT-T--TTCEECT
T ss_pred hcC-CCCccCCHHHHHHH-h--CCCeEcc
Confidence 111 12345677777654 4 5887754
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=142.65 Aligned_cols=118 Identities=23% Similarity=0.323 Sum_probs=98.7
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC---CCeEEEEcccCCCC---
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ---DHIRFYLCDYRQLP--- 97 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~---~~i~~~~~d~~~~~--- 97 (272)
+.+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+.. .++.+..+|+.+++
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 125 (293)
T 3thr_A 47 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV 125 (293)
T ss_dssp HHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred HHHHHHhcccCCCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence 44555555567889999999999999999997 779999999999999999887543321 36789999988875
Q ss_pred -CCCCccEEEEe-chhhccCh-----hhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 98 -KANKYDRIISC-GMIEHVGH-----DYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 98 -~~~~fD~V~~~-~~~~~~~~-----~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
++++||+|++. .+++|+++ ++...+++++.++|||||++++....
T Consensus 126 ~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 126 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 56899999998 89999976 55899999999999999999987643
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-17 Score=135.25 Aligned_cols=106 Identities=20% Similarity=0.308 Sum_probs=91.4
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEE-echh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIIS-CGMI 111 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~-~~~~ 111 (272)
.++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++. .++.++++|+.+++.+++||+|++ ..++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 111 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKE-FGDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRLGRKFSAVVSMFSSV 111 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHH-HSEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCCSSCEEEEEECTTGG
T ss_pred CCCCeEEEecccCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcccCCCCcEEEEcCchH
Confidence 57789999999999999999987 459999999999999998863 368999999998876678999996 4599
Q ss_pred hccCh-hhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 112 EHVGH-DYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 112 ~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
+|+++ ++...+++++.++|||||++++.++..+.
T Consensus 112 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 146 (239)
T 3bxo_A 112 GYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPE 146 (239)
T ss_dssp GGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcc
Confidence 99854 56789999999999999999997665443
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-17 Score=136.52 Aligned_cols=119 Identities=24% Similarity=0.422 Sum_probs=102.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA 99 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~ 99 (272)
...+..+++.+...++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++....+. ++.++++|+.+++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~ 103 (252)
T 1wzn_A 27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK 103 (252)
T ss_dssp HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC
T ss_pred HHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccC
Confidence 445566677776677889999999999999999986 78999999999999999999987764 699999999988755
Q ss_pred CCccEEEEe-chhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 100 NKYDRIISC-GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 100 ~~fD~V~~~-~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
++||+|++. ..+++++.++...+++++.++|+|||.+++...
T Consensus 104 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 789999987 456666667788999999999999999998644
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-17 Score=130.08 Aligned_cols=134 Identities=23% Similarity=0.344 Sum_probs=109.4
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccE
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDR 104 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~ 104 (272)
+++.+ +.++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++. .++.++++|+.+.+ ++++||+
T Consensus 39 ~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~~D~ 110 (195)
T 3cgg_A 39 LIDAM-APRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQISETDFDL 110 (195)
T ss_dssp HHHHH-SCTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSCCCCCCEEE
T ss_pred HHHHh-ccCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCCCCCCceeE
Confidence 45554 467889999999999999999987 789999999999999998874 36899999999877 5679999
Q ss_pred EEEe-chhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCC
Q 024096 105 IISC-GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSG 183 (272)
Q Consensus 105 V~~~-~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~G 183 (272)
|++. .+++|++.++...+++++.++|+|||++++...... ..+..++.+. ++++|
T Consensus 111 i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~-----------------------~~~~~~~~~~-l~~~G 166 (195)
T 3cgg_A 111 IVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR-----------------------GWVFGDFLEV-AERVG 166 (195)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS-----------------------SCCHHHHHHH-HHHHT
T ss_pred EEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC-----------------------CcCHHHHHHH-HHHcC
Confidence 9998 788998877788999999999999999998654311 1355666644 44689
Q ss_pred cEEEEEEe
Q 024096 184 LCVEHLEN 191 (272)
Q Consensus 184 f~v~~~~~ 191 (272)
|.+.....
T Consensus 167 f~~~~~~~ 174 (195)
T 3cgg_A 167 LELENAFE 174 (195)
T ss_dssp EEEEEEES
T ss_pred CEEeeeec
Confidence 99887754
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=131.17 Aligned_cols=115 Identities=20% Similarity=0.217 Sum_probs=97.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CC-
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-LP- 97 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-~~- 97 (272)
.....+++.+...++.+|||+|||+|.++..+++. ++.+++++|+++.+++.+++++...++++++ ++++|..+ ++
T Consensus 12 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~ 90 (178)
T 3hm2_A 12 HVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD 90 (178)
T ss_dssp HHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG
T ss_pred HHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc
Confidence 33466778888889999999999999999999988 6789999999999999999999998887688 88888754 33
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
..++||+|++..+++| ..+++++.++|||||++++....
T Consensus 91 ~~~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 91 VPDNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp CCSCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred cCCCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEeec
Confidence 2278999999998887 47899999999999999986553
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.4e-18 Score=138.59 Aligned_cols=125 Identities=17% Similarity=0.168 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHcCCC--------------CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHH
Q 024096 15 LEVGQMRKVSVLIEKARVS--------------KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVRE 79 (272)
Q Consensus 15 l~~aq~~~~~~l~~~l~~~--------------~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~ 79 (272)
|..+|.+.++.+...+.+. ++.+|||||||+|.++..+++. ++..|+|+|+|+.+++.|++++..
T Consensus 1 l~~~q~~~~~~~~~~~~~~~~~~~~d~~~~f~~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~ 80 (218)
T 3dxy_A 1 MGSGQEHALENYWPVMGVEFSEDMLDFPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHE 80 (218)
T ss_dssp ------CHHHHHHHHHBCCCCSSCCCHHHHHSSCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhHHhCCCCCCCCCCHHHHcCCCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHH
Confidence 3456777777777766543 5789999999999999999988 778999999999999999999998
Q ss_pred cCCCCCeEEEEcccCCC-C---CCCCccEEEEechhhccChhhH------HHHHHHHHhcCccCcEEEEEe
Q 024096 80 AGLQDHIRFYLCDYRQL-P---KANKYDRIISCGMIEHVGHDYM------EEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 80 ~g~~~~i~~~~~d~~~~-~---~~~~fD~V~~~~~~~~~~~~~~------~~~l~~~~~~LkpgG~l~i~~ 140 (272)
.++. ++.++++|+.++ + ++++||.|++.....+...... ..+++++.++|||||++++.+
T Consensus 81 ~~l~-nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 81 EGLS-NLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp TTCS-SEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hCCC-cEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 8875 799999998874 2 5689999999854443221111 259999999999999999864
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=132.07 Aligned_cols=114 Identities=14% Similarity=0.167 Sum_probs=95.7
Q ss_pred HcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccE
Q 024096 29 KARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDR 104 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~ 104 (272)
...+.++.+|||+|||+|.++..+++. +..+++|+|+++.+++.+++++...++.++++++++|+.+++ .+++||+
T Consensus 17 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~ 96 (197)
T 3eey_A 17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKA 96 (197)
T ss_dssp HHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEE
T ss_pred HhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceE
Confidence 335678899999999999999999987 457999999999999999999999888678999999998875 4578999
Q ss_pred EEEechhhc-------cChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 105 IISCGMIEH-------VGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 105 V~~~~~~~~-------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
|++...+.. ...++...+++++.++|||||++++..+.
T Consensus 97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 999875511 11234567999999999999999997654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.74 E-value=5e-17 Score=129.44 Aligned_cols=119 Identities=23% Similarity=0.404 Sum_probs=103.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEcccCCCCCCC
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD-HIRFYLCDYRQLPKAN 100 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~-~i~~~~~d~~~~~~~~ 100 (272)
..+.+++.+...++.+|||+|||+|.++..+++. +.+++|+|+++.+++.+++++...++++ ++++.++|+.+..+++
T Consensus 40 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 3456778888888999999999999999999987 8899999999999999999999888753 4999999998865667
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+||+|++..++++. .+....+++++.++|+|||.+++....
T Consensus 119 ~~D~v~~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 119 KYNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp CEEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred CceEEEECCCcccc-hhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 89999998887762 356789999999999999999997664
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=131.64 Aligned_cols=108 Identities=11% Similarity=0.112 Sum_probs=94.1
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEec
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCG 109 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~ 109 (272)
.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.+++++..+++ ++++++++|+.+.+ ++++||+|+++.
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECC
Confidence 57889999999999999988876556899999999999999999999888 68999999998865 368999999998
Q ss_pred hhhccChhhHHHHHHHHHh--cCccCcEEEEEeec
Q 024096 110 MIEHVGHDYMEEFFGCCES--LLATHGLLVLQFIS 142 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~~ 142 (272)
++++. .++...+++++.+ +|+|||++++....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 87764 2467889999998 99999999997654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.7e-18 Score=144.24 Aligned_cols=109 Identities=10% Similarity=0.026 Sum_probs=86.7
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC-----CeEEEEccc------CCCC---CC
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD-----HIRFYLCDY------RQLP---KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~-----~i~~~~~d~------~~~~---~~ 99 (272)
++.+|||||||+|..+..++...+.+|+|+|+|+.+++.|+++....+... ++.+.+.|+ .+++ ++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 578999999999986666665546799999999999999999987665321 267888887 3221 45
Q ss_pred CCccEEEEechhhcc-ChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 100 NKYDRIISCGMIEHV-GHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
++||+|++..+++++ ..++...++++++++|||||+++++++.
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 799999999999875 3345689999999999999999997764
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=142.57 Aligned_cols=150 Identities=19% Similarity=0.219 Sum_probs=101.5
Q ss_pred CCCCEEEEECCCchHHHHHH----HHc-cCCEE--EEEcCCHHHHHHHHHHHHHc-CCCCCeE--EEEcccCCCC-----
Q 024096 33 SKGQEVLDIGCGWGTLAIEI----VKQ-TGCKY--TGITLSEEQLKYAEIKVREA-GLQDHIR--FYLCDYRQLP----- 97 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l----~~~-~~~~v--~gvd~s~~~~~~a~~~~~~~-g~~~~i~--~~~~d~~~~~----- 97 (272)
.++.+|||||||+|.++..+ +.. ++..+ +|+|+|+.|++.+++++... ++ .++. +..++.++++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHHHT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhhcc
Confidence 56789999999999876543 333 45644 99999999999999998654 33 3454 4566665432
Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhccc-CCCCCCCHHHH
Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIF-PGGCLPSLGRV 174 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~ 174 (272)
++++||+|++..+++|+ +++..++++++++|||||++++........ +... ...+...... ......+.+++
T Consensus 130 ~~~~~~fD~V~~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~ 204 (292)
T 2aot_A 130 KKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVSGSSG-WDKL--WKKYGSRFPQDDLCQYITSDDL 204 (292)
T ss_dssp TTCCCCEEEEEEESCGGGC--SCHHHHHHHHHHTEEEEEEEEEEEECTTSH-HHHH--HHHHGGGSCCCTTCCCCCHHHH
T ss_pred ccCCCceeEEEEeeeeeec--CCHHHHHHHHHHHcCCCcEEEEEEecCCcc-HHHH--HHHHHHhccCCCcccCCCHHHH
Confidence 35789999999999999 566899999999999999999975542111 1100 0011110000 11245677777
Q ss_pred HHHhhcCCCcEEEEE
Q 024096 175 TSAMTSSSGLCVEHL 189 (272)
Q Consensus 175 ~~~l~~~~Gf~v~~~ 189 (272)
.+ +++++||.+...
T Consensus 205 ~~-~l~~aGf~~~~~ 218 (292)
T 2aot_A 205 TQ-MLDNLGLKYECY 218 (292)
T ss_dssp HH-HHHHHTCCEEEE
T ss_pred HH-HHHHCCCceEEE
Confidence 64 555699987764
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=138.68 Aligned_cols=152 Identities=18% Similarity=0.164 Sum_probs=111.3
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCC---------------------------
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGL--------------------------- 82 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~--------------------------- 82 (272)
+..++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.+++++...+.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACE-SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhc-ccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 4467789999999999999988876 44 999999999999999988754320
Q ss_pred -CCCe-EEEEcccCCCC--CC---CCccEEEEechhhccCh--hhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccC
Q 024096 83 -QDHI-RFYLCDYRQLP--KA---NKYDRIISCGMIEHVGH--DYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRL 153 (272)
Q Consensus 83 -~~~i-~~~~~d~~~~~--~~---~~fD~V~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 153 (272)
..++ .+.++|+.+.+ ++ ++||+|++..+++|++. +++..+++++.++|||||++++.+..... .+..
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-~~~~--- 207 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS-YYMI--- 207 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-EEEE---
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc-eEEc---
Confidence 0127 99999998864 34 78999999999995543 47789999999999999999998754322 1000
Q ss_pred cchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCc
Q 024096 154 SPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGI 194 (272)
Q Consensus 154 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~ 194 (272)
....+ .....+.+++.+ +++++||.++.+.....
T Consensus 208 -----~~~~~-~~~~~~~~~~~~-~l~~aGf~~~~~~~~~~ 241 (265)
T 2i62_A 208 -----GEQKF-SSLPLGWETVRD-AVEEAGYTIEQFEVISQ 241 (265)
T ss_dssp -----TTEEE-ECCCCCHHHHHH-HHHHTTCEEEEEEEECC
T ss_pred -----CCccc-cccccCHHHHHH-HHHHCCCEEEEEEEecc
Confidence 00000 112345667764 45569999998887653
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=146.36 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=118.0
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 23 VSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 23 ~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
...+++.++ +.++.+|||||||+|..+..++++ ++.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.
T Consensus 197 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~ 267 (372)
T 1fp1_D 197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFA-SVPQ 267 (372)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCC
T ss_pred HHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCccc-CCCC
Confidence 356777776 677899999999999999999998 7789999999 9888877642 369999999987 5223
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccC-cchhhhh--cccCCCCCCCHHHHHHH
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRL-SPGFIKE--YIFPGGCLPSLGRVTSA 177 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-~~~~~~~--~~~p~~~~~~~~~~~~~ 177 (272)
||+|++..++||+++++...++++++++|||||++++.+...+......... ....+.. ...+++...+.+++.+
T Consensus 268 -~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~- 345 (372)
T 1fp1_D 268 -GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEK- 345 (372)
T ss_dssp -EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHH-
T ss_pred -CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHH-
Confidence 9999999999999877667999999999999999999987765542111000 0011111 1123455567888874
Q ss_pred hhcCCCcEEEEEEe
Q 024096 178 MTSSSGLCVEHLEN 191 (272)
Q Consensus 178 l~~~~Gf~v~~~~~ 191 (272)
+++++||+++++..
T Consensus 346 ll~~aGf~~~~~~~ 359 (372)
T 1fp1_D 346 LSKLSGFSKFQVAC 359 (372)
T ss_dssp HHHHTTCSEEEEEE
T ss_pred HHHHCCCceEEEEE
Confidence 55569999887766
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-17 Score=142.41 Aligned_cols=176 Identities=20% Similarity=0.174 Sum_probs=128.7
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272)
+.+++.+...++.+|||||||+|.++..+++....+|+|+|+|+ +++.++++++.+++.++++++++|+.+++.+++||
T Consensus 40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 56667777778999999999999999999987456999999996 88999999999998789999999999987557899
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC-----C-ccccccCcchhhhhcccCCCCCCCHHHHHHH
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD-----Q-CYDEYRLSPGFIKEYIFPGGCLPSLGRVTSA 177 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-----~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 177 (272)
+|++..+++|+..+.....+.++.++|||||.+++....... . .+.+......++....+++..++........
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~i~~~~~~~~~~~~~~~w~~~~~~g~d~~~l~~~~~~ 198 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVD 198 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHHHHHHHHGGGCCSCBTTBCCGGGHHHHHH
T ss_pred EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecCcEEEEEecchHHhhhhccccCcccccccCcccHHHhhhHHHh
Confidence 999999999987777778888999999999999864332110 0 0000000112233345677777777665422
Q ss_pred hhcCCCc--EEEEEEecCccHHHHHHHHH
Q 024096 178 MTSSSGL--CVEHLENIGIHYYQTLRCWR 204 (272)
Q Consensus 178 l~~~~Gf--~v~~~~~~~~~~~~~~~~~~ 204 (272)
.|| .+....+++.+|..++..|.
T Consensus 199 ----~~f~~p~~d~~~~~~~~~~~~~~~~ 223 (348)
T 2y1w_A 199 ----EYFRQPVVDTFDIRILMAKSVKYTV 223 (348)
T ss_dssp ----HHHTSCEEECCCGGGBCBCCEEEEE
T ss_pred ----hhccCCeEEeECCeeecCcceEEEE
Confidence 344 45556666666665555554
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=131.14 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=90.1
Q ss_pred CCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEE
Q 024096 31 RVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIIS 107 (272)
Q Consensus 31 ~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~ 107 (272)
.+.++.+|||+||| +|.++..+++..+.+|+|+|+++.+++.+++++..+++ +++++++|+..+. ++++||+|++
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~ 129 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFS 129 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEE
Confidence 45688999999999 99999999987578999999999999999999999887 7999999975443 4589999999
Q ss_pred echhhccCh-----------------hhHHHHHHHHHhcCccCcEEEEEe
Q 024096 108 CGMIEHVGH-----------------DYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 108 ~~~~~~~~~-----------------~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+..+.+.++ +....+++++.++|||||++++..
T Consensus 130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (230)
T 3evz_A 130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYL 179 (230)
T ss_dssp CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 977765432 123789999999999999999853
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.3e-17 Score=132.14 Aligned_cols=141 Identities=18% Similarity=0.199 Sum_probs=105.1
Q ss_pred CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechhhc
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEH 113 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~ 113 (272)
+.+|||+|||+|.++..+++. +|+|+|+.+++.++++ ++.++++|+.+++ ++++||+|++..+++|
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTICF 114 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence 789999999999999888764 9999999999999876 5789999998888 5679999999999999
Q ss_pred cChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecC
Q 024096 114 VGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272)
+ .++..+++++.++|+|||++++.++............. .............+.+++.+ +++++||+++++....
T Consensus 115 ~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~-~l~~~Gf~~~~~~~~~ 189 (219)
T 1vlm_A 115 V--DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKN--KEKSVFYKNARFFSTEELMD-LMRKAGFEEFKVVQTL 189 (219)
T ss_dssp S--SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHT--TTC-CCSTTCCCCCHHHHHH-HHHHTTCEEEEEEEEC
T ss_pred c--cCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHH--hcCcchhcccccCCHHHHHH-HHHHCCCeEEEEeccc
Confidence 9 45689999999999999999998765322110000000 00011112234567788875 4556999998876643
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-17 Score=131.70 Aligned_cols=113 Identities=18% Similarity=0.124 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-K 98 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~ 98 (272)
......+++.+...++.+|||+|||+|.++..+++. +.+|+++|+++.+++.+++++...+++ ++++.++|+.+.. .
T Consensus 63 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~ 140 (210)
T 3lbf_A 63 PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQA 140 (210)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCcc
Confidence 345677888888899999999999999999999997 889999999999999999999988875 7999999998866 5
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
.++||+|++..+++|+++ ++.+.|||||++++....
T Consensus 141 ~~~~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 141 RAPFDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GCCEEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 579999999999999864 478999999999996554
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.5e-17 Score=134.59 Aligned_cols=109 Identities=18% Similarity=0.146 Sum_probs=94.4
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC------CCccEE
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA------NKYDRI 105 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~------~~fD~V 105 (272)
+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.. ..+++++++|+.+.+.. ..||+|
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~d~v 128 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHSEIGDANI 128 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHH-SSCEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHh-CCCEEEEECCHHHHHHHHHhCc----ccCceEEECcccccccccccccccCccEE
Confidence 467889999999999999999997 4599999999999999998762 24799999999886521 359999
Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
++..+++|+++++...+++++.++|||||++++.++..+.
T Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 168 (245)
T 3ggd_A 129 YMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGC 168 (245)
T ss_dssp EEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTH
T ss_pred EEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccc
Confidence 9999999998778899999999999999999998876543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-16 Score=132.53 Aligned_cols=114 Identities=18% Similarity=0.226 Sum_probs=95.1
Q ss_pred HHHHcCCC-CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCC
Q 024096 26 LIEKARVS-KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANK 101 (272)
Q Consensus 26 l~~~l~~~-~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~ 101 (272)
+...+... ++.+|||+|||+|.++..+++....+|+|+|+++.+++.|++++..+++.++++++++|+.+.+ ++++
T Consensus 40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~ 119 (259)
T 3lpm_A 40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKER 119 (259)
T ss_dssp HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTC
T ss_pred HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCC
Confidence 44455677 8899999999999999999988445999999999999999999999999888999999998876 3689
Q ss_pred ccEEEEechhhcc------------------ChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHV------------------GHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~------------------~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
||+|+++..+.+. ...+...+++.+.++|||||++++.
T Consensus 120 fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 175 (259)
T 3lpm_A 120 ADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV 175 (259)
T ss_dssp EEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence 9999998665432 1134567999999999999999984
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-17 Score=130.16 Aligned_cols=109 Identities=14% Similarity=0.222 Sum_probs=91.3
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKY 102 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~f 102 (272)
+.+.+.+ .+..+|||+|||+|.++..++.. ++++|+++|+|+.+++.+++++..+|...++++ .|....+++++|
T Consensus 41 ~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~ 116 (200)
T 3fzg_A 41 TYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTY 116 (200)
T ss_dssp HHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEE
T ss_pred HHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCc
Confidence 3444444 45789999999999999999887 788999999999999999999999988656666 565544566889
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
|+|++..++|++ ++.+..+.++.+.|+|||.++-
T Consensus 117 DvVLa~k~LHlL--~~~~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 117 DVVFLLKMLPVL--KQQDVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp EEEEEETCHHHH--HHTTCCHHHHHHTCEEEEEEEE
T ss_pred ChhhHhhHHHhh--hhhHHHHHHHHHHhCCCCEEEE
Confidence 999999999999 5556677799999999998863
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-17 Score=128.19 Aligned_cols=121 Identities=12% Similarity=0.111 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-
Q 024096 19 QMRKVSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL- 96 (272)
Q Consensus 19 q~~~~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~- 96 (272)
.....+.+++.+. ..++.+|||+|||+|.++..+++.+..+++|+|+++.+++.+++++...++.++++++++|+.+.
T Consensus 15 ~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 94 (177)
T 2esr_A 15 SDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI 94 (177)
T ss_dssp ---CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH
Confidence 3344566777776 66788999999999999999998744699999999999999999999988877899999998874
Q ss_pred C-CCCCccEEEEechhhccChhhHHHHHHHHH--hcCccCcEEEEEeec
Q 024096 97 P-KANKYDRIISCGMIEHVGHDYMEEFFGCCE--SLLATHGLLVLQFIS 142 (272)
Q Consensus 97 ~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~ 142 (272)
+ .+++||+|++..+++. ......++.+. ++|+|||++++....
T Consensus 95 ~~~~~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 95 DCLTGRFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp HHBCSCEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred HhhcCCCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 3 4467999999876542 33466777776 999999999997655
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-17 Score=142.46 Aligned_cols=128 Identities=16% Similarity=0.189 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHH-------HHcCC-CCCe
Q 024096 16 EVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKV-------REAGL-QDHI 86 (272)
Q Consensus 16 ~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~-------~~~g~-~~~i 86 (272)
.+.....+..+++.+.+.++.+|||||||+|.++..++...++ +++|+|+++.+++.|+++. +..|+ ..++
T Consensus 155 GEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rV 234 (438)
T 3uwp_A 155 GETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY 234 (438)
T ss_dssp GGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEE
T ss_pred CCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCe
Confidence 3455666788999999999999999999999999999977454 6999999999999998754 34465 3589
Q ss_pred EEEEcccCCCC-CC--CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCC
Q 024096 87 RFYLCDYRQLP-KA--NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272)
Q Consensus 87 ~~~~~d~~~~~-~~--~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272)
+++++|+.+++ .+ ..||+|+++..+. . .+....+.++.+.|||||+|++.+...+..
T Consensus 235 efi~GD~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d 294 (438)
T 3uwp_A 235 TLERGDFLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLN 294 (438)
T ss_dssp EEEECCTTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTT
T ss_pred EEEECcccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCC
Confidence 99999999887 22 4799999987653 3 466788899999999999999987776654
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-17 Score=133.53 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=89.2
Q ss_pred HHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCC
Q 024096 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANK 101 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~ 101 (272)
+.+.++||++|||+|||+|.++..+++. +..+|+|+|+++.+++.+++++.+. .++..+.+|..... ..+.
T Consensus 71 ~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~~~~~~ 147 (233)
T 4df3_A 71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYRHLVEG 147 (233)
T ss_dssp SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGTTTCCC
T ss_pred hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccccccce
Confidence 4577899999999999999999999997 5679999999999999998887654 47899999886643 4578
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
+|+|++.. .|. ++...+++++.+.|||||+++++..
T Consensus 148 vDvVf~d~--~~~--~~~~~~l~~~~r~LKpGG~lvI~ik 183 (233)
T 4df3_A 148 VDGLYADV--AQP--EQAAIVVRNARFFLRDGGYMLMAIK 183 (233)
T ss_dssp EEEEEECC--CCT--THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEEec--cCC--hhHHHHHHHHHHhccCCCEEEEEEe
Confidence 99998743 333 4567899999999999999998643
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-16 Score=146.79 Aligned_cols=120 Identities=21% Similarity=0.276 Sum_probs=100.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHc------CCCCCeEEEEcc
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREA------GLQDHIRFYLCD 92 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~------g~~~~i~~~~~d 92 (272)
..++.+++.+...++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++... ++ .+++++++|
T Consensus 708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGD 786 (950)
T 3htx_A 708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGS 786 (950)
T ss_dssp HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESC
T ss_pred HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECc
Confidence 334555666655688999999999999999999873 279999999999999999877642 34 379999999
Q ss_pred cCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 93 YRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 93 ~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+.+++ .+++||+|++..+++|+++.....+++++.++|||| .++++++.
T Consensus 787 a~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 787 ILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp TTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred hHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 99998 568999999999999998776778999999999999 77776554
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=127.11 Aligned_cols=115 Identities=20% Similarity=0.325 Sum_probs=98.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-LPKA 99 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-~~~~ 99 (272)
.....+++.+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...++.+++.+.++|+.+ ++..
T Consensus 20 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 98 (192)
T 1l3i_A 20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI 98 (192)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC
Confidence 334567777788899999999999999999999874 89999999999999999999988886689999999876 2232
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
++||+|++..+++++ ..+++++.++|+|||.+++...
T Consensus 99 ~~~D~v~~~~~~~~~-----~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 99 PDIDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp CCEEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCEEEECCchHHH-----HHHHHHHHHhcCCCcEEEEEec
Confidence 689999998877654 7899999999999999998654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-17 Score=136.83 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=87.7
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEE-
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIIS- 107 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~- 107 (272)
..+|.+|||||||+|..+..+++..+.+++++|+|+.+++.|+++....+ .++.++.+|+.+.. ++++||.|+.
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~FD~i~~D 135 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcccccccCCceEEEe
Confidence 36788999999999999999988755789999999999999999987765 47899999987653 5678999975
Q ss_pred ----echhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 108 ----CGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 108 ----~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+ .+...+++++.|+|||||++++.
T Consensus 136 ~~~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 136 TYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eeecccchhhh--cchhhhhhhhhheeCCCCEEEEE
Confidence 3455666 56789999999999999999874
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=129.89 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=92.6
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KAN 100 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~ 100 (272)
...+++.+.. ++.+|||+|||+|.++..+ +. +++|+|+|+.+++.++++. .++.++++|+.+++ +++
T Consensus 26 ~~~~l~~~~~-~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~ 94 (211)
T 2gs9_A 26 EERALKGLLP-PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGE 94 (211)
T ss_dssp HHHHHHTTCC-CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSS
T ss_pred HHHHHHHhcC-CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCC
Confidence 3445555543 7889999999999998877 45 9999999999999998875 37899999999988 667
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
+||+|++..+++|++ ++..+++++.++|||||++++.++..
T Consensus 95 ~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 95 SFDVVLLFTTLEFVE--DVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp CEEEEEEESCTTTCS--CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred cEEEEEEcChhhhcC--CHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 999999999999994 56899999999999999999987653
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-16 Score=127.92 Aligned_cols=106 Identities=22% Similarity=0.339 Sum_probs=90.1
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEe
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISC 108 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~ 108 (272)
.++.+|||+|||+|.++..+++. ++.+++|+|+|+.+++.|++++...++ +++.++++|+.+++ ++++||+|+++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLN 118 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence 45789999999999999999988 678999999999999999999998887 58999999998865 35789999998
Q ss_pred chhhccChh------hHHHHHHHHHhcCccCcEEEEE
Q 024096 109 GMIEHVGHD------YMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 109 ~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+.... ....+++++.++|+|||.+++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (214)
T 1yzh_A 119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 155 (214)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence 765432110 1257999999999999999985
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=132.30 Aligned_cols=101 Identities=16% Similarity=0.231 Sum_probs=88.5
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC----CCCccEEE
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK----ANKYDRII 106 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~----~~~fD~V~ 106 (272)
+.++.+|||+|||+|..+..++.. ++.+|+|+|+|+.+++.+++++...+++ +++++++|+.+++. +++||+|+
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~V~ 146 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVT 146 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccccCCccEEE
Confidence 357789999999999999999975 6789999999999999999999998885 69999999987762 57899999
Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+..+ .+...+++++.++|||||++++.
T Consensus 147 ~~~~------~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 147 ARAV------ARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp EECC------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred Eecc------CCHHHHHHHHHHhcCCCCEEEEE
Confidence 9762 34589999999999999999885
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=130.53 Aligned_cols=121 Identities=18% Similarity=0.172 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEccc
Q 024096 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDY 93 (272)
Q Consensus 17 ~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~ 93 (272)
..+...+..++...+.+++.+|||+|||+|..+..+++. ++.+|+++|+++.+++.|+++++..|+. ++++++++|+
T Consensus 39 ~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda 118 (221)
T 3dr5_A 39 EMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRP 118 (221)
T ss_dssp HHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCH
T ss_pred HHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCH
Confidence 344445566666666556679999999999999999986 3789999999999999999999999987 7899999998
Q ss_pred CCCC---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 94 RQLP---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 94 ~~~~---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
.+.. .+++||+|++.... .+...+++++.++|||||++++.+..
T Consensus 119 ~~~l~~~~~~~fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 119 LDVMSRLANDSYQLVFGQVSP-----MDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp HHHGGGSCTTCEEEEEECCCT-----TTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred HHHHHHhcCCCcCeEEEcCcH-----HHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 7653 25799999987543 33477999999999999999985544
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=133.06 Aligned_cols=128 Identities=23% Similarity=0.246 Sum_probs=102.7
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272)
+.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+++++..+++. +++.++|+.+..++++||+|+++...
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~-g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALPFGPFDLLVANLYA 194 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGGGCCEEEEEEECCH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCcCCCCCEEEECCcH
Confidence 467899999999999999998886 569999999999999999999988874 89999998763234689999997655
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEe
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLEN 191 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~ 191 (272)
+++ ..+++++.++|||||+++++.+... ..+++. .+.+++||.+.++..
T Consensus 195 ~~~-----~~~l~~~~~~LkpgG~lils~~~~~-------------------------~~~~v~-~~l~~~Gf~~~~~~~ 243 (254)
T 2nxc_A 195 ELH-----AALAPRYREALVPGGRALLTGILKD-------------------------RAPLVR-EAMAGAGFRPLEEAA 243 (254)
T ss_dssp HHH-----HHHHHHHHHHEEEEEEEEEEEEEGG-------------------------GHHHHH-HHHHHTTCEEEEEEE
T ss_pred HHH-----HHHHHHHHHHcCCCCEEEEEeeccC-------------------------CHHHHH-HHHHHCCCEEEEEec
Confidence 543 7899999999999999999755411 233444 344568999988766
Q ss_pred cC
Q 024096 192 IG 193 (272)
Q Consensus 192 ~~ 193 (272)
.+
T Consensus 244 ~~ 245 (254)
T 2nxc_A 244 EG 245 (254)
T ss_dssp ET
T ss_pred cC
Confidence 54
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=139.77 Aligned_cols=153 Identities=10% Similarity=0.092 Sum_probs=112.7
Q ss_pred HHHc--CCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 024096 27 IEKA--RVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272)
Q Consensus 27 ~~~l--~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272)
++.+ .+.++.+|||||||+|..+..+++. ++.+++++|+ +.+++.+++. .+++++.+|+.+ +.+ .||
T Consensus 179 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p-~~D 248 (352)
T 1fp2_A 179 LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFT-SIP-NAD 248 (352)
T ss_dssp HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTT-CCC-CCS
T ss_pred HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-------CCcEEEeccccC-CCC-Ccc
Confidence 4445 4567789999999999999999988 7889999999 9998877642 369999999876 422 399
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCcc---CcEEEEEeecCCCCccc----cccCcchhhhhcccCCCCCCCHHHHHH
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLAT---HGLLVLQFISAPDQCYD----EYRLSPGFIKEYIFPGGCLPSLGRVTS 176 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~ 176 (272)
+|++..++||+++++...++++++++||| ||++++.+...+..... ........ ...... +...+.+++.+
T Consensus 249 ~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~-~~~~~~-g~~~t~~e~~~ 326 (352)
T 1fp2_A 249 AVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDV-NMACLN-GKERNEEEWKK 326 (352)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHH-HGGGGT-CCCEEHHHHHH
T ss_pred EEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccH-HHHhcc-CCCCCHHHHHH
Confidence 99999999999877666999999999999 99999988876543211 00000011 011122 44557778864
Q ss_pred HhhcCCCcEEEEEEec
Q 024096 177 AMTSSSGLCVEHLENI 192 (272)
Q Consensus 177 ~l~~~~Gf~v~~~~~~ 192 (272)
+++++||.+.++...
T Consensus 327 -ll~~aGf~~~~~~~~ 341 (352)
T 1fp2_A 327 -LFIEAGFQHYKISPL 341 (352)
T ss_dssp -HHHHTTCCEEEEEEE
T ss_pred -HHHHCCCCeeEEEec
Confidence 555799998877653
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-17 Score=134.74 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=91.8
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC--C-CC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL--P-KA 99 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~--~-~~ 99 (272)
+..+.+.+ ..++.+|||+|||+|.++..+++....+++|+|+|+.+++.|+++....+ .++.++++|+.++ + ++
T Consensus 50 ~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~ 126 (236)
T 1zx0_A 50 MHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPD 126 (236)
T ss_dssp HHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCT
T ss_pred HHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCC
Confidence 33444433 46788999999999999999987544599999999999999999887665 4799999999887 5 56
Q ss_pred CCccEEEE-echh--hccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 100 NKYDRIIS-CGMI--EHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 100 ~~fD~V~~-~~~~--~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
++||+|++ ...+ +.....+...+++++.++|||||++++.+..
T Consensus 127 ~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 127 GHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp TCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred CceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 89999999 4442 2222244567899999999999999985543
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.6e-17 Score=132.64 Aligned_cols=109 Identities=18% Similarity=0.284 Sum_probs=93.3
Q ss_pred HcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC---CCCccE
Q 024096 29 KARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK---ANKYDR 104 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~---~~~fD~ 104 (272)
.+...++.+|||+|||+|..+..+++. ++.+|+++|+++.+++.|+++++..++.++++++++|+.+..+ +++||+
T Consensus 66 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~ 145 (232)
T 3ntv_A 66 LIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDM 145 (232)
T ss_dssp HHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEE
T ss_pred HHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccE
Confidence 333457789999999999999999986 5789999999999999999999999987799999999987643 579999
Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
|++.... .....+++++.++|||||++++.+..
T Consensus 146 V~~~~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~ 178 (232)
T 3ntv_A 146 IFIDAAK-----AQSKKFFEIYTPLLKHQGLVITDNVL 178 (232)
T ss_dssp EEEETTS-----SSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred EEEcCcH-----HHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence 9987543 34578999999999999999986554
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-16 Score=128.78 Aligned_cols=113 Identities=28% Similarity=0.474 Sum_probs=96.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKY 102 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~f 102 (272)
.+.+.+.+ .++.+|||+|||+|.++..+++. .+++|+|+|+.+++.++++....+ .++++.++|+.+.+.+++|
T Consensus 24 ~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~f 97 (243)
T 3d2l_A 24 VAWVLEQV--EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELPEPV 97 (243)
T ss_dssp HHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCSSCE
T ss_pred HHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCCCCc
Confidence 34455554 35689999999999999999886 799999999999999999988766 4799999999988755899
Q ss_pred cEEEEec-hhhcc-ChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 103 DRIISCG-MIEHV-GHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 103 D~V~~~~-~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
|+|++.. +++|+ +.++...+++++.++|||||++++...
T Consensus 98 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 98 DAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp EEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 9999986 99998 445678999999999999999998543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=132.93 Aligned_cols=117 Identities=15% Similarity=0.290 Sum_probs=96.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA 99 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~ 99 (272)
..++.+++.+. .++.+|||+|||+|.++..+++. ++.+++++|+|+.+++.+++++...+++ +++++++|+.+..++
T Consensus 97 ~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~~ 174 (276)
T 2b3t_A 97 CLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALAG 174 (276)
T ss_dssp HHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGTT
T ss_pred HHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhccc
Confidence 34566777766 67789999999999999999976 6789999999999999999999988875 799999998775445
Q ss_pred CCccEEEEech-------------hhccCh----------hhHHHHHHHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGM-------------IEHVGH----------DYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~-------------~~~~~~----------~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
++||+|+++.. ++|.|. +....+++++.++|+|||++++.
T Consensus 175 ~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 175 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 78999999843 333321 34578999999999999999985
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=143.30 Aligned_cols=181 Identities=21% Similarity=0.185 Sum_probs=131.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKY 102 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~f 102 (272)
.+.+++.+...++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.|++++..+++.++++++++|+.+++.+++|
T Consensus 147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~f 225 (480)
T 3b3j_A 147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 225 (480)
T ss_dssp HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCe
Confidence 355667776678899999999999999999987567999999998 9999999999999988999999999987745789
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC---C--CC-ccccccCcchhhhhcccCCCCCCCHHHHHH
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA---P--DQ-CYDEYRLSPGFIKEYIFPGGCLPSLGRVTS 176 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~---~--~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 176 (272)
|+|++..+++|+..++....+.++.++|||||++++..... + .. .+.+......++....+++..++.+.+...
T Consensus 226 D~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~~~~~~~pi~~~~l~~e~~~~~~~w~~~~~~g~dl~~l~~~~~ 305 (480)
T 3b3j_A 226 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAV 305 (480)
T ss_dssp EEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHHHHHHHHHHHHSSCBTTBCCGGGHHHHH
T ss_pred EEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEeceeeeeccCchHHHHHHhhccCccccccCCCcChhhhhhHHH
Confidence 99999988888876777788889999999999998633221 0 00 000000012233334678888887766542
Q ss_pred HhhcCCCcEEEEEEecCccHHHHHHHHHHH
Q 024096 177 AMTSSSGLCVEHLENIGIHYYQTLRCWRKN 206 (272)
Q Consensus 177 ~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~ 206 (272)
. +..+..++...+++.+|..++..|.+.
T Consensus 306 ~--~~f~~pvvd~~~~~~~y~~tl~~~~d~ 333 (480)
T 3b3j_A 306 D--EYFRQPVVDTFDIRILMAKSVKYTVNF 333 (480)
T ss_dssp H--HHTTSCEECCCCSTTBCSCCEEEEEET
T ss_pred H--hccCCcEEEEeecccccchhhhhhhhh
Confidence 2 112225666667777776665555443
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-16 Score=137.97 Aligned_cols=117 Identities=13% Similarity=0.235 Sum_probs=98.0
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC--CeEEEEcccCCCCCCC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQD--HIRFYLCDYRQLPKAN 100 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~--~i~~~~~d~~~~~~~~ 100 (272)
+.+++.+...++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.+++++..+++.+ +++++.+|+.+..+++
T Consensus 212 ~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 212 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 44677777777899999999999999999998 68899999999999999999999988653 5888999998855667
Q ss_pred CccEEEEechhhc---cChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 101 KYDRIISCGMIEH---VGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 101 ~fD~V~~~~~~~~---~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+||+|+++..+++ +.+.....+++++.++|||||++++..
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 9999999998875 333344578999999999999999954
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=125.51 Aligned_cols=119 Identities=16% Similarity=0.097 Sum_probs=96.1
Q ss_pred HHHHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 024096 21 RKVSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272)
Q Consensus 21 ~~~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272)
...+.+++.+. ..++.+|||+|||+|.++..+++....+|+|+|+++.+++.+++++..+++.++++++++|+.+..
T Consensus 30 ~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 109 (187)
T 2fhp_A 30 KVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQ 109 (187)
T ss_dssp HHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHH
Confidence 34455666663 457889999999999999998886557999999999999999999999887678999999987743
Q ss_pred ---CCCCccEEEEechhhccChhhHHHHHHHH--HhcCccCcEEEEEeec
Q 024096 98 ---KANKYDRIISCGMIEHVGHDYMEEFFGCC--ESLLATHGLLVLQFIS 142 (272)
Q Consensus 98 ---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~i~~~~ 142 (272)
.+++||+|++..+++.. .....++.+ .++|+|||.+++....
T Consensus 110 ~~~~~~~fD~i~~~~~~~~~---~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 110 FYEEKLQFDLVLLDPPYAKQ---EIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp HHHTTCCEEEEEECCCGGGC---CHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred HHhcCCCCCEEEECCCCCch---hHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 25789999998875432 335666666 8899999999986554
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=139.41 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=98.7
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272)
+.+.+.+...++.+|||+|||+|.++..+++....+|+|+|+| .+++.++++++.+++.++++++++|+.+++.+++||
T Consensus 53 ~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 131 (376)
T 3r0q_C 53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVD 131 (376)
T ss_dssp HHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEE
T ss_pred HHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcce
Confidence 4445555677899999999999999999999733499999999 999999999999999888999999999988558999
Q ss_pred EEEEechhhccCh-hhHHHHHHHHHhcCccCcEEEEEee
Q 024096 104 RIISCGMIEHVGH-DYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 104 ~V~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
+|++..+.+++.. ..+..+++.+.++|||||.++++..
T Consensus 132 ~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 132 VIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp EEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred EEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 9999765555533 3467899999999999999987433
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.9e-16 Score=121.07 Aligned_cols=112 Identities=16% Similarity=0.243 Sum_probs=95.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA 99 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~ 99 (272)
......+++.+...++.+|||+|||+|.++..+++ .+.+++|+|+++.+++.+++++...++ ++++++++|+.+..++
T Consensus 21 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~ 98 (183)
T 2yxd_A 21 EEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAEDVLDK 98 (183)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHHHGGG
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccccccC
Confidence 33446677777888899999999999999999998 688999999999999999999999887 4799999998873245
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
++||+|++..+ .+...+++++.++ |||.+++...
T Consensus 99 ~~~D~i~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 99 LEFNKAFIGGT------KNIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp CCCSEEEECSC------SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred CCCcEEEECCc------ccHHHHHHHHhhC--CCCEEEEEec
Confidence 78999999887 2347899999988 9999998654
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=128.98 Aligned_cols=116 Identities=13% Similarity=0.105 Sum_probs=93.2
Q ss_pred HHHHHHcCC-CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC---C
Q 024096 24 SVLIEKARV-SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYRQLP---K 98 (272)
Q Consensus 24 ~~l~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~---~ 98 (272)
+.+++.+.. .++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++..+++. ++++++++|+.+.. .
T Consensus 42 ~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 121 (201)
T 2ift_A 42 ETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ 121 (201)
T ss_dssp HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC
T ss_pred HHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhc
Confidence 344444432 267899999999999999877764469999999999999999999998874 58999999987754 2
Q ss_pred CCC-ccEEEEechhhccChhhHHHHHHHH--HhcCccCcEEEEEeec
Q 024096 99 ANK-YDRIISCGMIEHVGHDYMEEFFGCC--ESLLATHGLLVLQFIS 142 (272)
Q Consensus 99 ~~~-fD~V~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~i~~~~ 142 (272)
+++ ||+|++...++ . .+...+++.+ .++|+|||.++++...
T Consensus 122 ~~~~fD~I~~~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 122 NQPHFDVVFLDPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp SSCCEEEEEECCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred cCCCCCEEEECCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 468 99999988744 3 4567888888 6789999999987655
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.4e-16 Score=135.55 Aligned_cols=112 Identities=26% Similarity=0.301 Sum_probs=95.2
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKY 102 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~f 102 (272)
+.+.+.+...++.+|||+|||+|.++..+++....+|+|+|+|+ +++.|+++++.+++.++++++++|+.+++ ++++|
T Consensus 54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 44555566778899999999999999999987445999999997 99999999999998779999999999987 55899
Q ss_pred cEEEEech---hhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 103 DRIISCGM---IEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 103 D~V~~~~~---~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
|+|++..+ +.+. ..+..+++++.++|||||+++.
T Consensus 133 D~Ivs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 133 DVIISEWMGYFLLFE--SMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp EEEEECCCBTTBTTT--CHHHHHHHHHHHHEEEEEEEES
T ss_pred EEEEEcCchhhccCH--HHHHHHHHHHHhhcCCCcEEEc
Confidence 99999773 4443 4567899999999999999983
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=130.40 Aligned_cols=107 Identities=17% Similarity=0.221 Sum_probs=90.7
Q ss_pred CCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-CC-----CCcc
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P-KA-----NKYD 103 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~-~~-----~~fD 103 (272)
.++.+|||+|||+|..+..+++. ++.+|+++|+++.+++.|+++++..++.++++++++|+.+. + .. ++||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 46789999999999999999986 37899999999999999999999999877899999998553 2 12 6899
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+|++....++. .....+++.+ ++|||||++++.+..
T Consensus 137 ~V~~d~~~~~~--~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKDRY--LPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EEEECSCGGGH--HHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEcCCcccc--hHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 99998877766 3445677777 999999999986655
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-16 Score=127.16 Aligned_cols=107 Identities=15% Similarity=0.241 Sum_probs=92.5
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272)
.++.+|||+|||+|.++..+++....+++|+|+|+.+++.++++.... .++.+.++|+.+++ ++++||+|++..++
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~---~~i~~~~~d~~~~~~~~~~fD~v~~~~~~ 117 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV---PQLRWETMDVRKLDFPSASFDVVLEKGTL 117 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC---TTCEEEECCTTSCCSCSSCEEEEEEESHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC---CCcEEEEcchhcCCCCCCcccEEEECcch
Confidence 678899999999999999999872238999999999999999887532 47999999999887 56799999999999
Q ss_pred hccC-------------hhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 112 EHVG-------------HDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 112 ~~~~-------------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+++. .++...+++++.++|||||++++.++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 118 DALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp HHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 8775 346689999999999999999997665
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=137.88 Aligned_cols=107 Identities=25% Similarity=0.261 Sum_probs=92.3
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEec
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCG 109 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~ 109 (272)
.+.++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.|+++++.+++.++++++++|+.+++ ++++||+|++..
T Consensus 63 ~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~ 141 (349)
T 3q7e_A 63 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW 141 (349)
T ss_dssp HHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred ccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcc
Confidence 4467899999999999999999998445999999995 99999999999999888999999999988 568999999977
Q ss_pred hhhccC-hhhHHHHHHHHHhcCccCcEEEE
Q 024096 110 MIEHVG-HDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 110 ~~~~~~-~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+.+++. ...+..+++.+.++|||||+++.
T Consensus 142 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 142 MGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 544442 24568899999999999999975
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.3e-16 Score=124.86 Aligned_cols=99 Identities=17% Similarity=0.332 Sum_probs=87.6
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhh
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIE 112 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~ 112 (272)
++.+|||+|||+|..+..+++. ++.+++++|+|+.+++.+++++...+++ ++++.++|+.+.++.++||+|++...
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPSEPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCCCSCEEEEECSCS--
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCCccCCcCEEEEecc--
Confidence 4789999999999999999987 6789999999999999999999988875 49999999998876678999997542
Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+...+++++.++|+|||++++.
T Consensus 142 ----~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 142 ----ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ----SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred ----CCHHHHHHHHHHhcCCCcEEEEE
Confidence 23479999999999999999985
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.2e-16 Score=131.45 Aligned_cols=105 Identities=20% Similarity=0.257 Sum_probs=91.3
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272)
.+++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++++.+++.++++++++|+.+.+.+++||+|++....
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 35789999999999999999998733379999999999999999999999987799999999998877899999996442
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
. ...+++++.++|||||++++.+..
T Consensus 203 ~------~~~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 203 R------THEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp S------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred h------HHHHHHHHHHHCCCCeEEEEEEee
Confidence 2 257888999999999999997665
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-15 Score=123.45 Aligned_cols=105 Identities=25% Similarity=0.288 Sum_probs=89.5
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CCCCCCccEEEEec
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-LPKANKYDRIISCG 109 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-~~~~~~fD~V~~~~ 109 (272)
++++.+|||||||+|.++..+++. +..+|+++|+++.+++.|+++++.+|+.++++++.+|..+ +++.++||+|++.+
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 347889999999999999999997 4568999999999999999999999998889999999854 44334799999865
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+ +.+-...++..+...|+|+|+++++.
T Consensus 93 ~----Gg~~i~~Il~~~~~~L~~~~~lVlq~ 119 (225)
T 3kr9_A 93 M----GGRLIARILEEGLGKLANVERLILQP 119 (225)
T ss_dssp E----CHHHHHHHHHHTGGGCTTCCEEEEEE
T ss_pred C----ChHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 4 33445789999999999999999853
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=124.57 Aligned_cols=105 Identities=24% Similarity=0.234 Sum_probs=90.6
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC-CCccEEEEec
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA-NKYDRIISCG 109 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~-~~fD~V~~~~ 109 (272)
++++.+|||||||+|.++..+++. +..+|+++|+++.+++.|+++++.+|+.+++++.++|..+...+ ++||+|++.+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 357889999999999999999997 45689999999999999999999999988999999998876633 4799998765
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+.- +-...++....+.|+++|+++++.
T Consensus 99 mGg----~lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 99 MGG----RLIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp ECH----HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred Cch----HHHHHHHHHHHHHhCcCCEEEEEC
Confidence 433 445789999999999999999864
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-16 Score=126.64 Aligned_cols=107 Identities=17% Similarity=0.241 Sum_probs=89.2
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEe
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISC 108 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~ 108 (272)
.++.+|||||||+|.++..+++. ++.+++|+|+|+.+++.|++++...++ .+++++++|+.+++ ++++||.|++.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLN 115 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence 36789999999999999999988 788999999999999999999998887 47999999998864 45789999987
Q ss_pred chhhccChh------hHHHHHHHHHhcCccCcEEEEEe
Q 024096 109 GMIEHVGHD------YMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 109 ~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
....+.... ....+++++.++|||||.+++.+
T Consensus 116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 554332110 12679999999999999999853
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.66 E-value=6e-16 Score=137.75 Aligned_cols=122 Identities=11% Similarity=0.128 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHH-------HHHHHHcCCC-CCeEEEE
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYA-------EIKVREAGLQ-DHIRFYL 90 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a-------~~~~~~~g~~-~~i~~~~ 90 (272)
...+..+++.+.+.++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.| ++++...|+. .++++++
T Consensus 228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~ 307 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 307 (433)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE
Confidence 345567888888999999999999999999999987 446899999999999998 8888888853 6899999
Q ss_pred cccCCCC-----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCC
Q 024096 91 CDYRQLP-----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272)
Q Consensus 91 ~d~~~~~-----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272)
+|....+ ..++||+|+++..+ +. .+....++++.+.|||||++++.+...+
T Consensus 308 gD~~~~~~~~~~~~~~FDvIvvn~~l-~~--~d~~~~L~el~r~LKpGG~lVi~d~f~p 363 (433)
T 1u2z_A 308 KKSFVDNNRVAELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLKSLRS 363 (433)
T ss_dssp SSCSTTCHHHHHHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred cCccccccccccccCCCCEEEEeCcc-cc--ccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence 8644321 24689999987666 33 4667889999999999999998754444
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-16 Score=130.08 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=88.3
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC----CCCccEEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK----ANKYDRIIS 107 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~----~~~fD~V~~ 107 (272)
.++.+|||||||+|..+..++.. ++.+|+++|+|+.+++.+++++...++. +++++++|+++++. .++||+|++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcccccCCCceEEEE
Confidence 56889999999999999999987 7889999999999999999999999985 59999999988763 378999999
Q ss_pred echhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 108 CGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+ .+...+++.+.++|||||++++.
T Consensus 158 ~a~------~~~~~ll~~~~~~LkpgG~l~~~ 183 (249)
T 3g89_A 158 RAV------APLCVLSELLLPFLEVGGAAVAM 183 (249)
T ss_dssp ESS------CCHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCc------CCHHHHHHHHHHHcCCCeEEEEE
Confidence 643 23478999999999999999874
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=9.5e-16 Score=128.05 Aligned_cols=166 Identities=11% Similarity=0.037 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHcCC-CCCCEEEEECCCc--hHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 024096 16 EVGQMRKVSVLIEKARV-SKGQEVLDIGCGW--GTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90 (272)
Q Consensus 16 ~~aq~~~~~~l~~~l~~-~~~~~vLDiG~G~--G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~ 90 (272)
..+.+..+..+++.+.. ....+|||||||+ +.++..++++ ++++|+++|.|+.+++.+++++...+ ..++++++
T Consensus 59 a~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~ 137 (277)
T 3giw_A 59 MRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVE 137 (277)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEE
T ss_pred HHHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEE
Confidence 45556666777777753 3447999999997 4455555554 78999999999999999999886542 24799999
Q ss_pred cccCCCC-----C--CCCcc-----EEEEechhhccChhh-HHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchh
Q 024096 91 CDYRQLP-----K--ANKYD-----RIISCGMIEHVGHDY-MEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGF 157 (272)
Q Consensus 91 ~d~~~~~-----~--~~~fD-----~V~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 157 (272)
+|+.+.+ + .+.|| .|+++.++||+++.+ +..+++++.+.|+|||+|++++.+..... .........
T Consensus 138 aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p-~~~~~~~~~ 216 (277)
T 3giw_A 138 ADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP-QEVGRVARE 216 (277)
T ss_dssp CCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH-HHHHHHHHH
T ss_pred ecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH-HHHHHHHHH
Confidence 9998852 1 24455 688999999998765 67899999999999999999887754221 111111111
Q ss_pred hhhcccCCCCCCCHHHHHHHhhcCCCcEEE
Q 024096 158 IKEYIFPGGCLPSLGRVTSAMTSSSGLCVE 187 (272)
Q Consensus 158 ~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~ 187 (272)
.+..-.| ..+.+.+++.+. . .||+++
T Consensus 217 ~~~~g~p-~~~rs~~ei~~~-f--~Glelv 242 (277)
T 3giw_A 217 YAARNMP-MRLRTHAEAEEF-F--EGLELV 242 (277)
T ss_dssp HHHTTCC-CCCCCHHHHHHT-T--TTSEEC
T ss_pred HHhcCCC-CccCCHHHHHHH-h--CCCccc
Confidence 1111112 245677788754 4 399864
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.5e-16 Score=128.69 Aligned_cols=111 Identities=19% Similarity=0.274 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KAN 100 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~ 100 (272)
.+..++..+- .++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++.. .+ +.++|+.+++ +++
T Consensus 43 ~~~~~l~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~~~~~~ 113 (260)
T 2avn_A 43 LIGSFLEEYL-KNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDLPFPSG 113 (260)
T ss_dssp HHHHHHHHHC-CSCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSCCSCTT
T ss_pred HHHHHHHHhc-CCCCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHCCCCCC
Confidence 3444444432 27789999999999999999986 7899999999999999988742 12 8899999888 568
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+||+|++..++.|+.. ++..+++++.++|||||++++..+.
T Consensus 114 ~fD~v~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 114 AFEAVLALGDVLSYVE-NKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp CEEEEEECSSHHHHCS-CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred CEEEEEEcchhhhccc-cHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9999999987777743 3789999999999999999997665
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=9.1e-16 Score=135.26 Aligned_cols=122 Identities=18% Similarity=0.295 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHcC--CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC
Q 024096 17 VGQMRKVSVLIEKAR--VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR 94 (272)
Q Consensus 17 ~aq~~~~~~l~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~ 94 (272)
......++.+.+.+. ..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++..+++ +++++++|+.
T Consensus 214 ~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~~~--~v~~~~~D~~ 290 (381)
T 3dmg_A 214 PASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEANAL--KAQALHSDVD 290 (381)
T ss_dssp HHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTT
T ss_pred HHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEcchh
Confidence 344445556655543 346789999999999999999997 78999999999999999999998886 4899999999
Q ss_pred CCC-CCCCccEEEEechhhc---cChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 95 QLP-KANKYDRIISCGMIEH---VGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 95 ~~~-~~~~fD~V~~~~~~~~---~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
+.+ ++++||+|+++.++++ ...+....+++++.++|||||.+++...
T Consensus 291 ~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 291 EALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp TTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 887 4489999999999887 3336778999999999999999998643
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=137.65 Aligned_cols=156 Identities=12% Similarity=0.111 Sum_probs=115.4
Q ss_pred HHHHHc--CCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 024096 25 VLIEKA--RVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272)
Q Consensus 25 ~l~~~l--~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272)
.+++.+ .+.++.+|||||||+|.++..++++ ++.+++++|+ +.+++.+++ . .+++++.+|+.+ +.+ .
T Consensus 182 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~~-~ 251 (358)
T 1zg3_A 182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK-SIP-S 251 (358)
T ss_dssp HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT-CCC-C
T ss_pred HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC-CCC-C
Confidence 455665 4456789999999999999999998 7789999999 788876654 2 369999999987 522 4
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCcc---CcEEEEEeecCCCCccc----cccCcchhhhhcccCCCCCCCHHHH
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLAT---HGLLVLQFISAPDQCYD----EYRLSPGFIKEYIFPGGCLPSLGRV 174 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~ 174 (272)
||+|++..++||+++++...++++++++|+| ||++++.+...+..... .......+ ......++...+.+++
T Consensus 252 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~-~~~~~~~g~~~t~~e~ 330 (358)
T 1zg3_A 252 ADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDL-VMLTMFLGKERTKQEW 330 (358)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHH-HHHHHHSCCCEEHHHH
T ss_pred ceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCH-HHhccCCCCCCCHHHH
Confidence 9999999999999877667999999999999 99999988776543211 01001111 0111234556688888
Q ss_pred HHHhhcCCCcEEEEEEec
Q 024096 175 TSAMTSSSGLCVEHLENI 192 (272)
Q Consensus 175 ~~~l~~~~Gf~v~~~~~~ 192 (272)
.+ +++++||.+.++...
T Consensus 331 ~~-ll~~aGf~~~~~~~~ 347 (358)
T 1zg3_A 331 EK-LIYDAGFSSYKITPI 347 (358)
T ss_dssp HH-HHHHTTCCEEEEEEE
T ss_pred HH-HHHHcCCCeeEEEec
Confidence 74 555699998887664
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.65 E-value=9e-16 Score=129.71 Aligned_cols=110 Identities=18% Similarity=0.253 Sum_probs=90.6
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEcccCCCCCCC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREA-GLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~-g~~~~i~~~~~d~~~~~~~~ 100 (272)
..+++.+.+.++.+|||+|||+|.++..+++. ++.+++++|+++.+++.+++++... |. +++++.++|+.+..+++
T Consensus 100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~~~ 178 (275)
T 1yb2_A 100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFISDQ 178 (275)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCCSC
T ss_pred HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCcCC
Confidence 46777788889999999999999999999986 4789999999999999999999887 74 48999999998844567
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
+||+|++ +++ +...+++++.++|||||++++.+.
T Consensus 179 ~fD~Vi~-----~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 179 MYDAVIA-----DIP--DPWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp CEEEEEE-----CCS--CGGGSHHHHHHTEEEEEEEEEEES
T ss_pred CccEEEE-----cCc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 8999998 443 336899999999999999998653
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=125.24 Aligned_cols=108 Identities=15% Similarity=0.153 Sum_probs=89.1
Q ss_pred HHH---HHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC----
Q 024096 24 SVL---IEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ---- 95 (272)
Q Consensus 24 ~~l---~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~---- 95 (272)
..+ ++.+.+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++++.. +++.++.+|+.+
T Consensus 61 ~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~ 137 (230)
T 1fbn_A 61 AAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEY 137 (230)
T ss_dssp HHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGG
T ss_pred HHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccc
Confidence 455 55566778999999999999999999988 4479999999999999999887654 589999999987
Q ss_pred CCCCCCccEEEEechhhccChh-hHHHHHHHHHhcCccCcEEEEE
Q 024096 96 LPKANKYDRIISCGMIEHVGHD-YMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 96 ~~~~~~fD~V~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+..++||+|+. ++++. ....+++++.++|||||++++.
T Consensus 138 ~~~~~~~D~v~~-----~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 138 ANIVEKVDVIYE-----DVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp TTTSCCEEEEEE-----CCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCccEEEEEE-----ecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 653478999993 33322 2367799999999999999996
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=9.5e-16 Score=125.98 Aligned_cols=111 Identities=21% Similarity=0.261 Sum_probs=95.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-K 98 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~ 98 (272)
...+..+++.+...++.+|||+|||+|.++..+++. +.+++|+|+++.+++.++++....+ ++.++++|+.+.. .
T Consensus 56 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~ 131 (231)
T 1vbf_A 56 LNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEE 131 (231)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHH-cCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCccccccc
Confidence 345677888888889999999999999999999987 5899999999999999999987654 7999999998733 4
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+++||+|++..+++|+++ ++.++|+|||++++....
T Consensus 132 ~~~fD~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 132 EKPYDRVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp GCCEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 578999999999999852 578899999999997554
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=124.84 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=88.4
Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC---C-CCC
Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL---P-KAN 100 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~---~-~~~ 100 (272)
++.+.+.++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.+.++++.+ .+++++++|+.+. + .++
T Consensus 70 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~ 146 (233)
T 2ipx_A 70 VDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIA 146 (233)
T ss_dssp CSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCC
T ss_pred HheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCC
Confidence 34566788999999999999999999987 3579999999999988888888775 4899999999873 3 457
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
+||+|++... ..+....+++++.++|||||+++++..
T Consensus 147 ~~D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 147 MVDVIFADVA----QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp CEEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cEEEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 8999999654 223345678899999999999999533
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.1e-16 Score=128.09 Aligned_cols=107 Identities=11% Similarity=0.129 Sum_probs=91.5
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C---CCCCccEE
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P---KANKYDRI 105 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~---~~~~fD~V 105 (272)
..++.+|||+|||+|..+..+++. + +.+|+++|+++.+++.|++++...++.++++++++|+.+. + ..++||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 346789999999999999999987 4 7899999999999999999999999988999999998763 2 23589999
Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
++... ......+++++.++|||||++++.+...
T Consensus 141 ~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 141 FIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp EECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 98653 2445789999999999999999876653
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=122.87 Aligned_cols=104 Identities=19% Similarity=0.166 Sum_probs=83.4
Q ss_pred cCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----CCCCCccE
Q 024096 30 ARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL----PKANKYDR 104 (272)
Q Consensus 30 l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~~~~~fD~ 104 (272)
+.+.++.+|||+|||+|..+..+++. ++.+|+|+|+|+.+++.+.+..+.. .++.++.+|+... +..++||+
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~fD~ 129 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDL 129 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccccceeE
Confidence 56778999999999999999999987 4479999999999887777666553 3789999998774 33478999
Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
|++.. ..+ .....+++++.++|||||++++..
T Consensus 130 V~~~~-~~~---~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 130 IYQDI-AQK---NQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp EEECC-CST---THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEec-cCh---hHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99972 221 334566999999999999999963
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-16 Score=127.95 Aligned_cols=107 Identities=15% Similarity=0.163 Sum_probs=91.1
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----C-CCCcc
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----K-ANKYD 103 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~-~~~fD 103 (272)
..++.+|||+|||+|..+..+++. + +.+++++|+++.+++.+++++...++.++++++++|+.+.. . .++||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 346789999999999999999997 4 78999999999999999999999998878999999986642 1 26799
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
+|++.... .....+++++.++|+|||++++.+...
T Consensus 136 ~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 136 FIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp EEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred EEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 99987653 344789999999999999999866553
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=126.64 Aligned_cols=112 Identities=19% Similarity=0.247 Sum_probs=97.2
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
...+++.+.+.++.+|||+|||+|.++..+++. ++.+++++|+++.+++.|+++++..++++++++.++|+.+..+++
T Consensus 82 ~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 82 AALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 356778888899999999999999999999987 378999999999999999999999998777999999998765667
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
+||+|++. .+ +...+++++.++|+|||++++...
T Consensus 162 ~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 162 NVDHVILD-----LP--QPERVVEHAAKALKPGGFFVAYTP 195 (255)
T ss_dssp SEEEEEEC-----SS--CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CcCEEEEC-----CC--CHHHHHHHHHHHcCCCCEEEEEEC
Confidence 89999983 32 336789999999999999998543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-16 Score=127.85 Aligned_cols=111 Identities=19% Similarity=0.292 Sum_probs=94.7
Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-C--CCC
Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P-K--ANK 101 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~-~--~~~ 101 (272)
...+...++.+|||+|||+|..+..+++. ++.+|+++|+++.+++.|++++...++.+++.++++|+.+. + . +++
T Consensus 47 ~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 126 (233)
T 2gpy_A 47 LHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPL 126 (233)
T ss_dssp HHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCC
T ss_pred HHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCC
Confidence 33344557889999999999999999988 57899999999999999999999998877899999999875 3 2 578
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
||+|++....+ +...+++++.++|+|||++++.++.
T Consensus 127 fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 127 FDVLFIDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp EEEEEEEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred ccEEEECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 99999977644 3478999999999999999997554
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-15 Score=122.74 Aligned_cols=114 Identities=22% Similarity=0.211 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272)
......+++.+...++.+|||+|||+|.++..+++..+ .+++++|+++.+++.++++....+++ ++.+.++|+....
T Consensus 63 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~ 141 (215)
T 2yxe_A 63 IHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGY 141 (215)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCC
T ss_pred HHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCC
Confidence 34456778888888999999999999999999998733 79999999999999999999888774 6999999986543
Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
..++||+|++..+++|++ +++.++|||||++++....
T Consensus 142 ~~~~~fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 142 EPLAPYDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp GGGCCEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEESS
T ss_pred CCCCCeeEEEECCchHHHH--------HHHHHHcCCCcEEEEEECC
Confidence 357899999999999985 3688999999999997544
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=120.18 Aligned_cols=120 Identities=18% Similarity=0.122 Sum_probs=93.0
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIE 112 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~ 112 (272)
.++.+|||+|||+|.++..+++. + +|+|+|+|+.+++. .++++++++|+.+..++++||+|+++..++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~-~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~ 89 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR-N-TVVSTDLNIRALES----------HRGGNLVRADLLCSINQESVDVVVFNPPYV 89 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT-S-EEEEEESCHHHHHT----------CSSSCEEECSTTTTBCGGGCSEEEECCCCB
T ss_pred CCCCeEEEeccCccHHHHHHHhc-C-cEEEEECCHHHHhc----------ccCCeEEECChhhhcccCCCCEEEECCCCc
Confidence 45679999999999999999987 5 99999999999987 247899999998844558999999998888
Q ss_pred ccChh-------hHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcE
Q 024096 113 HVGHD-------YMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLC 185 (272)
Q Consensus 113 ~~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~ 185 (272)
+.++. +...+++++.+.| |||++++..... ....++. .+++++||.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-------------------------~~~~~l~-~~l~~~gf~ 142 (170)
T 3q87_B 90 PDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-------------------------NRPKEVL-ARLEERGYG 142 (170)
T ss_dssp TTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-------------------------GCHHHHH-HHHHHTTCE
T ss_pred cCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC-------------------------CCHHHHH-HHHHHCCCc
Confidence 65332 3457888888888 999999865431 1333444 344568998
Q ss_pred EEEEEe
Q 024096 186 VEHLEN 191 (272)
Q Consensus 186 v~~~~~ 191 (272)
+..+..
T Consensus 143 ~~~~~~ 148 (170)
T 3q87_B 143 TRILKV 148 (170)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 876655
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.64 E-value=7e-16 Score=124.52 Aligned_cols=117 Identities=15% Similarity=0.086 Sum_probs=92.3
Q ss_pred HHHHHHHHcCCC-CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-C
Q 024096 22 KVSVLIEKARVS-KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P-K 98 (272)
Q Consensus 22 ~~~~l~~~l~~~-~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~-~ 98 (272)
..+.+++.+... ++.+|||+|||+|.++..++++...+|+++|+|+.+++.+++++..+++ ++++++++|+.+. + .
T Consensus 41 ~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~ 119 (202)
T 2fpo_A 41 VRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQK 119 (202)
T ss_dssp HHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSC
T ss_pred HHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhc
Confidence 334444444332 6789999999999999988876335999999999999999999999887 5899999998773 4 4
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHh--cCccCcEEEEEeec
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCES--LLATHGLLVLQFIS 142 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~~ 142 (272)
.++||+|++...++ . .....+++.+.+ +|+|||+++++...
T Consensus 120 ~~~fD~V~~~~p~~-~--~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 120 GTPHNIVFVDPPFR-R--GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp CCCEEEEEECCSSS-T--TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCCCCEEEECCCCC-C--CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 57899999987744 3 345677888865 59999999987654
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-16 Score=132.51 Aligned_cols=117 Identities=20% Similarity=0.170 Sum_probs=86.5
Q ss_pred HHHHHHHcCC--CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC---
Q 024096 23 VSVLIEKARV--SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL--- 96 (272)
Q Consensus 23 ~~~l~~~l~~--~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~--- 96 (272)
+..+++.+.. .++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|++++..+++.++++++++|+.+.
T Consensus 52 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 131 (254)
T 2h00_A 52 VEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMD 131 (254)
T ss_dssp HHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTT
T ss_pred HHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhh
Confidence 3444444332 25789999999999999999887 67899999999999999999999999877799999997652
Q ss_pred C-C---CCCccEEEEechhhccCh-------------hhHHHHHHHHHhcCccCcEEEEE
Q 024096 97 P-K---ANKYDRIISCGMIEHVGH-------------DYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 97 ~-~---~~~fD~V~~~~~~~~~~~-------------~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+ + +++||+|+++..+++... +....++.++.++|||||.+.+.
T Consensus 132 ~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 132 ALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp TSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred hhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 2 2 258999999977665430 11235678899999999998764
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-15 Score=125.17 Aligned_cols=110 Identities=19% Similarity=0.218 Sum_probs=94.9
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEcccCCCC-CC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREA-GLQDHIRFYLCDYRQLP-KA 99 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~-g~~~~i~~~~~d~~~~~-~~ 99 (272)
..+++.+.+.++.+|||+|||+|.++..+++. ++.+++++|+++.+++.++++++.. | .+++.+.++|+.+.+ ++
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCCC
Confidence 46778888899999999999999999999987 3689999999999999999999887 7 458999999999885 55
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
++||+|++. .+ +...+++++.++|+|||++++...
T Consensus 165 ~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 165 AAYDGVALD-----LM--EPWKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp TCEEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCcCEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 789999983 32 335889999999999999998543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-15 Score=125.09 Aligned_cols=119 Identities=12% Similarity=0.204 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcC-CHHHHHHHHHHH-----HHcCCC----CCeEE
Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITL-SEEQLKYAEIKV-----REAGLQ----DHIRF 88 (272)
Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~-s~~~~~~a~~~~-----~~~g~~----~~i~~ 88 (272)
.....+.+.+.....++.+|||+|||+|.++..+++....+|+++|+ ++.+++.+++++ ..+++. +++.+
T Consensus 64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~ 143 (281)
T 3bzb_A 64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKV 143 (281)
T ss_dssp HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEE
T ss_pred HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEE
Confidence 34445566665555678899999999999999998863349999999 899999999999 555553 47888
Q ss_pred EEcccCCCC-------CCCCccEEEEechhhccChhhHHHHHHHHHhcCc---c--CcEEEEE
Q 024096 89 YLCDYRQLP-------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLA---T--HGLLVLQ 139 (272)
Q Consensus 89 ~~~d~~~~~-------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lk---p--gG~l~i~ 139 (272)
...|..+.. .+++||+|++..+++|. .+...+++.+.++|+ | ||++++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 144 VPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp EECCTTSCTHHHHHHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred EEecCCCccHHHHhhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 877765532 24789999999999987 567899999999999 9 9998773
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-15 Score=129.80 Aligned_cols=123 Identities=19% Similarity=0.218 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEcccCCC
Q 024096 19 QMRKVSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD-HIRFYLCDYRQL 96 (272)
Q Consensus 19 q~~~~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~-~i~~~~~d~~~~ 96 (272)
|......+.+.+. ..++.+|||+|||+|.++..+++. +++|+++|+|+.+++.+++++..+++.+ +++++++|+.+.
T Consensus 137 q~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~ 215 (332)
T 2igt_A 137 QIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF 215 (332)
T ss_dssp GHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHH
Confidence 3333334444432 456789999999999999999986 6699999999999999999999998865 599999998775
Q ss_pred CC-----CCCccEEEEechhhccC--------hhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 97 PK-----ANKYDRIISCGMIEHVG--------HDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 97 ~~-----~~~fD~V~~~~~~~~~~--------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
.. .++||+|++........ .++...+++++.++|+|||.+++....
T Consensus 216 l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 216 IQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp HHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred HHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 41 57899999965421111 145678999999999999998876554
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-15 Score=122.53 Aligned_cols=105 Identities=23% Similarity=0.275 Sum_probs=90.3
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC-CCccEEEEec
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA-NKYDRIISCG 109 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~-~~fD~V~~~~ 109 (272)
++++.+|||||||+|.++..+++. +..+|+++|+++.+++.|+++++.+|+.+++++.++|..+...+ ++||+|++.+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 357889999999999999999997 45689999999999999999999999988899999998876643 4699998765
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+ +.+-...++....+.|+++++++++.
T Consensus 99 m----Gg~lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 99 M----GGTLIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp E----CHHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred C----chHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 4 33446789999999999999999864
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-16 Score=128.70 Aligned_cols=117 Identities=20% Similarity=0.184 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCC-CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 024096 20 MRKVSVLIEKARV-SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272)
Q Consensus 20 ~~~~~~l~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272)
...++.+++.+.. .++.+|||+|||+|.++..+++. ++.+++|+|+|+.+++.+++++...+. +++++++|+.+..
T Consensus 15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~ 92 (215)
T 4dzr_A 15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEWL 92 (215)
T ss_dssp HHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhhh
Confidence 4456777777765 78899999999999999999998 577999999999999999999887765 7899999987732
Q ss_pred CC-----CCccEEEEechhhcc------Chhh------------------HHHHHHHHHhcCccCcEEEE
Q 024096 98 KA-----NKYDRIISCGMIEHV------GHDY------------------MEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 98 ~~-----~~fD~V~~~~~~~~~------~~~~------------------~~~~l~~~~~~LkpgG~l~i 138 (272)
++ ++||+|+++..+.+. +... ...+++++.++|||||++++
T Consensus 93 ~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 162 (215)
T 4dzr_A 93 IERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVF 162 (215)
T ss_dssp HHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEE
T ss_pred hhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 43 899999997654332 1111 16788999999999999444
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.64 E-value=8e-16 Score=129.01 Aligned_cols=114 Identities=15% Similarity=0.239 Sum_probs=93.8
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHH---cCCCCCeEEEEcccCCCC----
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVRE---AGLQDHIRFYLCDYRQLP---- 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~---~g~~~~i~~~~~d~~~~~---- 97 (272)
+...+...++.+|||+|||+|.++..++++ ++.+++|+|+++.+++.|++++.. +++.+++.++++|+.+..
T Consensus 28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~ 107 (260)
T 2ozv_A 28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARV 107 (260)
T ss_dssp HHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHH
T ss_pred HHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhh
Confidence 344556678889999999999999999998 568999999999999999999988 888778999999998872
Q ss_pred ----CCCCccEEEEechhhcc----------------ChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 ----KANKYDRIISCGMIEHV----------------GHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ----~~~~fD~V~~~~~~~~~----------------~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
++++||+|+++..+... .......+++.+.++|||||++++.
T Consensus 108 ~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 108 EAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp HTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 35789999998544322 1223678999999999999999984
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=131.64 Aligned_cols=114 Identities=25% Similarity=0.320 Sum_probs=94.7
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKY 102 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~f 102 (272)
+.+.+.+...++.+|||+|||+|.++..+++....+|+|+|++ .+++.|+++++.+++.++++++++|+.+++ ++++|
T Consensus 28 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 106 (328)
T 1g6q_1 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKV 106 (328)
T ss_dssp HHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCE
T ss_pred HHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcc
Confidence 3444455556788999999999999999998744599999999 589999999999999888999999999987 55899
Q ss_pred cEEEEechhhccC-hhhHHHHHHHHHhcCccCcEEEE
Q 024096 103 DRIISCGMIEHVG-HDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 103 D~V~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
|+|++..+.+++. ...+..++..+.++|||||+++.
T Consensus 107 D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 107 DIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp EEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 9999986544442 24567899999999999999974
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-17 Score=136.42 Aligned_cols=103 Identities=18% Similarity=0.217 Sum_probs=91.9
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhc
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH 113 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~ 113 (272)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++.++++++++|+.+.+++++||+|++..++++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~ 156 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGG 156 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCSS
T ss_pred CCCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcCC
Confidence 6889999999999999999996 789999999999999999999999886689999999988876689999999999998
Q ss_pred cChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 114 VGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+. ....+.++.++|+|||.+++.
T Consensus 157 ~~~--~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 157 PDY--ATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp GGG--GGSSSBCTTTSCSSCHHHHHH
T ss_pred cch--hhhHHHHHHhhcCCcceeHHH
Confidence 743 345777899999999997763
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7.9e-16 Score=128.20 Aligned_cols=120 Identities=13% Similarity=0.113 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHc---CCCCC--------
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREA---GLQDH-------- 85 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~---g~~~~-------- 85 (272)
...++.+++.+...++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|++++... ++.++
T Consensus 37 ~~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~ 116 (250)
T 1o9g_A 37 TEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQS 116 (250)
T ss_dssp HHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhh
Confidence 345566777666556789999999999999999875 3579999999999999999888755 43222
Q ss_pred -----------------eE-------------EEEcccCCCC------CCCCccEEEEechhhccCh-------hhHHHH
Q 024096 86 -----------------IR-------------FYLCDYRQLP------KANKYDRIISCGMIEHVGH-------DYMEEF 122 (272)
Q Consensus 86 -----------------i~-------------~~~~d~~~~~------~~~~fD~V~~~~~~~~~~~-------~~~~~~ 122 (272)
++ +.++|+.+.. ..++||+|+++.++.+... +....+
T Consensus 117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~ 196 (250)
T 1o9g_A 117 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGL 196 (250)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHH
T ss_pred hhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHH
Confidence 56 9999988754 3348999999987665532 456789
Q ss_pred HHHHHhcCccCcEEEEE
Q 024096 123 FGCCESLLATHGLLVLQ 139 (272)
Q Consensus 123 l~~~~~~LkpgG~l~i~ 139 (272)
++++.++|+|||++++.
T Consensus 197 l~~~~~~LkpgG~l~~~ 213 (250)
T 1o9g_A 197 LRSLASALPAHAVIAVT 213 (250)
T ss_dssp HHHHHHHSCTTCEEEEE
T ss_pred HHHHHHhcCCCcEEEEe
Confidence 99999999999999984
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.6e-15 Score=120.16 Aligned_cols=110 Identities=17% Similarity=0.158 Sum_probs=83.8
Q ss_pred HHHHHHc---CCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 24 SVLIEKA---RVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 24 ~~l~~~l---~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
..+++.+ .+.+|.+|||+|||+|..+..+++. +..+|+++|+++.+++...+..+.. .++.++++|+....
T Consensus 63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~ 139 (232)
T 3id6_C 63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQS 139 (232)
T ss_dssp HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGG
T ss_pred HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchh
Confidence 4444444 4889999999999999999999987 4679999999999876655555443 48999999987643
Q ss_pred ---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 98 ---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 98 ---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
..++||+|++..+. + .....+.+.+.+.|||||+++++.
T Consensus 140 ~~~~~~~~D~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 140 YKSVVENVDVLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp TTTTCCCEEEEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhccccceEEEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEE
Confidence 24689999997543 1 223345566677999999999863
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=125.00 Aligned_cols=90 Identities=23% Similarity=0.307 Sum_probs=78.8
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-CCCC-C-CCCccEEEEec
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY-RQLP-K-ANKYDRIISCG 109 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~-~~~~-~-~~~fD~V~~~~ 109 (272)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++ ..+++++++|+ ..++ + +++||+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~ 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPAGLGAPFGLIVSRR 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCTTCCCCEEEEEEES
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCCcCCCCEEEEEeCC
Confidence 57889999999999999999997 78999999999999999987 14799999999 5566 4 68999999971
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
++..+++++.++|||||+++
T Consensus 120 --------~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 120 --------GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp --------CCSGGGGGHHHHEEEEEEEE
T ss_pred --------CHHHHHHHHHHHcCCCcEEE
Confidence 33678899999999999998
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-16 Score=127.22 Aligned_cols=106 Identities=21% Similarity=0.209 Sum_probs=90.7
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CC----CCcc
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KA----NKYD 103 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~----~~fD 103 (272)
.++.+|||+|||+|..+..+++. + +.+|+++|+++.+++.+++++...++.++++++++|+.+.. .. ++||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 46789999999999999999987 4 78999999999999999999999998878999999986542 11 7899
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
+|++... ......+++++.++|||||++++.+...
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 9997653 2345789999999999999999976653
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-15 Score=128.37 Aligned_cols=117 Identities=13% Similarity=0.147 Sum_probs=95.0
Q ss_pred HHHHHcCCCCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC
Q 024096 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANK 101 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~ 101 (272)
.+...+...++.+|||+|||+|..+..+++. . +.+|+++|+++.+++.+++++...|+. ++.++++|+.+++ .+++
T Consensus 109 l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~ 187 (315)
T 1ixk_A 109 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVE 187 (315)
T ss_dssp HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCC
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhccccccc
Confidence 3455667889999999999999999999987 2 479999999999999999999998885 7999999998876 4578
Q ss_pred ccEEEEech------hhccCh--------------hhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 102 YDRIISCGM------IEHVGH--------------DYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 102 fD~V~~~~~------~~~~~~--------------~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
||+|++... +.+.++ +....+++++.++|||||++++++.+
T Consensus 188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 999998533 222211 11258999999999999999997665
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=131.85 Aligned_cols=116 Identities=17% Similarity=0.252 Sum_probs=97.2
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKY 102 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~f 102 (272)
+.+++.+...++.+|||+|||+|.++..+++. +..+++++|+|+.+++.+++++..+++. ++++.+|+.+.+ +++|
T Consensus 186 ~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~-~~~f 262 (343)
T 2pjd_A 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV-KGRF 262 (343)
T ss_dssp HHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC-CSCE
T ss_pred HHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc-cCCe
Confidence 44667776566789999999999999999988 5579999999999999999999988763 677899987654 5789
Q ss_pred cEEEEechhhcc---ChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 103 DRIISCGMIEHV---GHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 103 D~V~~~~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
|+|+++.++++- ..++...+++++.++|||||.+++....
T Consensus 263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 999999988752 2356689999999999999999986543
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.9e-15 Score=125.18 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=95.3
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK----- 98 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~----- 98 (272)
+...++..++.+|||+|||+|..+..+++. .+ .+|+++|+++.+++.++++++..|+. ++.++++|+.+++.
T Consensus 75 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~ 153 (274)
T 3ajd_A 75 PPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKN 153 (274)
T ss_dssp HHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHT
T ss_pred HHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhc
Confidence 344567788999999999999999999986 44 79999999999999999999999885 89999999987652
Q ss_pred CCCccEEEEechhhccC----------------hhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 99 ANKYDRIISCGMIEHVG----------------HDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~----------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
.++||+|++.......+ .+....+++++.++|||||++++++.+.
T Consensus 154 ~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 154 EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 57899999974322110 0234789999999999999999977653
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-15 Score=125.05 Aligned_cols=111 Identities=19% Similarity=0.216 Sum_probs=95.6
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272)
..+++.+.+.++.+|||+|||+|.++..+++. ++.+++++|+++.+++.+++++...++.+++.+..+|+.+..++++
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 181 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKD 181 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCS
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCc
Confidence 56778888899999999999999999999987 3689999999999999999999988876689999999887654568
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
||+|++. .+ +...+++++.++|+|||++++...
T Consensus 182 ~D~V~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 182 VDALFLD-----VP--DPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp EEEEEEC-----CS--CGGGTHHHHHHHEEEEEEEEEEES
T ss_pred cCEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9999984 32 335889999999999999998643
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=119.49 Aligned_cols=103 Identities=20% Similarity=0.298 Sum_probs=84.9
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C----CCCCccEEEEe
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P----KANKYDRIISC 108 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~----~~~~fD~V~~~ 108 (272)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.+++++...++ +++++++|+.+. + ..++||+|++.
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 6789999999999999999987 56699999999999999999998876 799999998774 2 13489999999
Q ss_pred chhhccChhhHHHHHHHHH--hcCccCcEEEEEeecC
Q 024096 109 GMIEHVGHDYMEEFFGCCE--SLLATHGLLVLQFISA 143 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~~ 143 (272)
.+++ - ....+++.+. ++|+|||.++++....
T Consensus 118 ~~~~-~---~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 118 PPYA-M---DLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CCTT-S---CTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCCc-h---hHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 8765 1 1245555565 9999999999976653
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.9e-16 Score=127.32 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=90.7
Q ss_pred cCCCCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C---C-----
Q 024096 30 ARVSKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P---K----- 98 (272)
Q Consensus 30 l~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~---~----- 98 (272)
+...++.+|||+|||+|..+..+++. + +.+++++|+++.+++.+++++...++.+++.++++|+.+. + .
T Consensus 56 ~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~ 135 (239)
T 2hnk_A 56 TKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAP 135 (239)
T ss_dssp HHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCC
T ss_pred HHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccc
Confidence 33457889999999999999999987 3 6899999999999999999999988876799999997653 2 1
Q ss_pred --------C-CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 99 --------A-NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 99 --------~-~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+ ++||+|++..... ....+++++.++|+|||++++.+..
T Consensus 136 ~~~~~f~~~~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~ 183 (239)
T 2hnk_A 136 SWASDFAFGPSSIDLFFLDADKE-----NYPNYYPLILKLLKPGGLLIADNVL 183 (239)
T ss_dssp GGGTTTCCSTTCEEEEEECSCGG-----GHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred cccccccCCCCCcCEEEEeCCHH-----HHHHHHHHHHHHcCCCeEEEEEccc
Confidence 2 7899999975433 4478999999999999999986644
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-15 Score=132.18 Aligned_cols=106 Identities=24% Similarity=0.281 Sum_probs=89.5
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272)
..+|.+|||||||+|.++..+++....+|+++|.|+ +++.|+++++.+|+.++|.++++|++++..++++|+|++..+-
T Consensus 81 ~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~ 159 (376)
T 4hc4_A 81 ALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMG 159 (376)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCB
T ss_pred hcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccc
Confidence 347889999999999999988886445899999996 8899999999999999999999999998866899999996544
Q ss_pred hccChh-hHHHHHHHHHhcCccCcEEEE
Q 024096 112 EHVGHD-YMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 112 ~~~~~~-~~~~~l~~~~~~LkpgG~l~i 138 (272)
..+..+ .+..++....++|||||.++-
T Consensus 160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 160 YGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccccchhhhHHHHHHhhCCCCceECC
Confidence 333323 567888888999999999874
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=119.41 Aligned_cols=111 Identities=22% Similarity=0.220 Sum_probs=92.2
Q ss_pred HHHHHHcC--CCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEEEcccCC
Q 024096 24 SVLIEKAR--VSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGL----QDHIRFYLCDYRQ 95 (272)
Q Consensus 24 ~~l~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~----~~~i~~~~~d~~~ 95 (272)
..+++.+. +.++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++...+. .+++.+.++|+..
T Consensus 65 ~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 144 (226)
T 1i1n_A 65 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM 144 (226)
T ss_dssp HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred HHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc
Confidence 45566665 6788999999999999999999873 36999999999999999999887653 3589999999886
Q ss_pred CC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 96 LP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 96 ~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
.. ..++||+|++..+++++. +++.+.|||||++++...+
T Consensus 145 ~~~~~~~fD~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 145 GYAEEAPYDAIHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp CCGGGCCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred CcccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 65 457899999998887763 4678999999999997554
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=140.19 Aligned_cols=110 Identities=18% Similarity=0.254 Sum_probs=91.6
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEec
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCG 109 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~ 109 (272)
..+.+|||||||.|.++..||+. |++|+|+|+++.+++.|+..+...|.. ++.+.+++++++. .+++||+|++.+
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~-ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK-GATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC-CCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhccCCCccEEEECc
Confidence 35679999999999999999997 999999999999999999999887642 6999999999874 457899999999
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEEEeecCC
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272)
+++|+++.+....+..+.+.|+++|..++..+...
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~ 177 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVK 177 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCT
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEeccc
Confidence 99999654333445567788899988877665543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-15 Score=122.11 Aligned_cols=113 Identities=23% Similarity=0.312 Sum_probs=94.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-LPKA 99 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-~~~~ 99 (272)
.....+++.+.+.++.+|||+|||+|.++..+++..+.+|+++|+++.+++.+++++...++. ++.+..+|+.. ++..
T Consensus 78 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~ 156 (235)
T 1jg1_A 78 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFPPK 156 (235)
T ss_dssp HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCcccCCCCC
Confidence 345677788888899999999999999999999883389999999999999999999988875 59999999732 2233
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
.+||+|++..+++++++ ++.+.|+|||++++....
T Consensus 157 ~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 157 APYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp CCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred CCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEec
Confidence 46999999999998853 578899999999996554
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.9e-15 Score=124.73 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=86.5
Q ss_pred CCCEEEEECCCchH----HHHHHHHc-c----CCEEEEEcCCHHHHHHHHHHHHH-----------------------cC
Q 024096 34 KGQEVLDIGCGWGT----LAIEIVKQ-T----GCKYTGITLSEEQLKYAEIKVRE-----------------------AG 81 (272)
Q Consensus 34 ~~~~vLDiG~G~G~----~~~~l~~~-~----~~~v~gvd~s~~~~~~a~~~~~~-----------------------~g 81 (272)
++.+|||+|||+|. ++..+++. + +.+|+|+|+|+.+++.|++.+-. .|
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 66667765 3 36999999999999999986410 00
Q ss_pred -------CCCCeEEEEcccCCCC-C-CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 82 -------LQDHIRFYLCDYRQLP-K-ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 82 -------~~~~i~~~~~d~~~~~-~-~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+.+++.|.++|+.+.+ + .++||+|+|.+++.|++++....+++++++.|+|||++++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 0136999999998854 2 5789999999999999887789999999999999999998
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-15 Score=122.41 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=89.1
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-CCCCccEEEEe
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P-KANKYDRIISC 108 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~-~~~~fD~V~~~ 108 (272)
.++.+|||+|||+|..+..+++. + +.+|+++|+++.+++.+++++...++.++++++++|+.+. + .++ ||+|++.
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 35679999999999999999987 4 7899999999999999999999888877899999998764 3 345 9999987
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
... .+...+++++.++|||||++++.+...
T Consensus 134 ~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 134 CDV-----FNGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp TTT-----SCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred CCh-----hhhHHHHHHHHHhcCCCeEEEEECccc
Confidence 432 345789999999999999999866543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-15 Score=124.25 Aligned_cols=110 Identities=19% Similarity=0.244 Sum_probs=93.5
Q ss_pred HHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccE
Q 024096 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDR 104 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~ 104 (272)
.+.+. .++|.+|||+|||+|.++..+++...++|+++|++|.+++.++++++.+++.++++++++|..+++..+.||.
T Consensus 118 ri~~~--~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~ 195 (278)
T 3k6r_A 118 RMAKV--AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADR 195 (278)
T ss_dssp HHHHH--CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEE
T ss_pred HHHHh--cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCE
Confidence 34444 4589999999999999999999875579999999999999999999999999899999999999887789999
Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
|+++.... ...++..+.++|||||.+.+....
T Consensus 196 Vi~~~p~~------~~~~l~~a~~~lk~gG~ih~~~~~ 227 (278)
T 3k6r_A 196 ILMGYVVR------THEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp EEECCCSS------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred EEECCCCc------HHHHHHHHHHHcCCCCEEEEEeee
Confidence 99864322 145777788899999999886554
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=120.13 Aligned_cols=111 Identities=15% Similarity=0.187 Sum_probs=96.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANK 101 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~ 101 (272)
...+++.+.+.++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....++.+++.+..+|+.+.. +++.
T Consensus 80 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 80 SFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 346777888889999999999999999999998 88999999999999999999998888678999999998866 5678
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
||+|++. .+ ++..+++++.++|+|||++++...
T Consensus 159 ~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 159 FHAAFVD-----VR--EPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp BSEEEEC-----SS--CGGGGHHHHHHHBCTTCEEEEEES
T ss_pred ccEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9999983 32 335789999999999999998544
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-16 Score=130.71 Aligned_cols=108 Identities=18% Similarity=0.185 Sum_probs=92.6
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C------CCCcc
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-K------ANKYD 103 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~------~~~fD 103 (272)
.++.+|||+|||+|..+..+++. + +.+|+++|+++.+++.|+++++..++.++++++++|+.+.. . .++||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 45679999999999999999997 3 78999999999999999999999999889999999987653 1 47899
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
+|++... ..+...+++++.++|||||++++.+.....
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 9998754 244578999999999999999997766433
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-15 Score=122.69 Aligned_cols=107 Identities=19% Similarity=0.310 Sum_probs=83.7
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHH------cCCCCCeEEEEcccCC-CC---CCC
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVRE------AGLQDHIRFYLCDYRQ-LP---KAN 100 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~------~g~~~~i~~~~~d~~~-~~---~~~ 100 (272)
..++.+|||||||+|.++..+++. ++..++|+|+|+.+++.|++++.. .++ .++.++++|+.+ ++ +++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~ 122 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKG 122 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCc
Confidence 456779999999999999999988 678999999999999999988764 344 489999999987 44 467
Q ss_pred CccEEEEechhhccCh---h---hHHHHHHHHHhcCccCcEEEEE
Q 024096 101 KYDRIISCGMIEHVGH---D---YMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~---~---~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+||.|++...-.+... + ....+++++.++|||||.+++.
T Consensus 123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~ 167 (235)
T 3ckk_A 123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI 167 (235)
T ss_dssp CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence 8999998654333210 0 0147999999999999999985
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.8e-15 Score=124.49 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=91.9
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKY 102 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~f 102 (272)
++.+++.+...++.+|||+|||+|.++..+++.++.+|+|+|+|+.+++.|++++..+++.++++++++|+.+..+ ++|
T Consensus 112 v~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~-~~f 190 (284)
T 1nv8_A 112 VELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-EKF 190 (284)
T ss_dssp HHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-GGT
T ss_pred HHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc-ccc
Confidence 3455555443466799999999999999998876789999999999999999999999987779999999887432 478
Q ss_pred ---cEEEEechhh-----------ccCh------hhHHHHHHHHH-hcCccCcEEEEE
Q 024096 103 ---DRIISCGMIE-----------HVGH------DYMEEFFGCCE-SLLATHGLLVLQ 139 (272)
Q Consensus 103 ---D~V~~~~~~~-----------~~~~------~~~~~~l~~~~-~~LkpgG~l~i~ 139 (272)
|+|+++.... |-+. .+...+++++. +.|+|||++++.
T Consensus 191 ~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 191 ASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp TTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred CCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 9999984322 2221 11127899999 999999999984
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.3e-15 Score=124.18 Aligned_cols=112 Identities=18% Similarity=0.287 Sum_probs=96.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHc-C-CCCCeEEEEcccCCCC-
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREA-G-LQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~-g-~~~~i~~~~~d~~~~~- 97 (272)
...+++.+++.++.+|||+|||+|.++..+++. ++.+++++|+++.+++.+++++... | +.+++.+.++|+.+.+
T Consensus 88 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 88 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 456778888899999999999999999999986 4789999999999999999999877 4 4468999999998876
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
++++||+|++. ++ ++..+++++.++|+|||++++...
T Consensus 168 ~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 168 PDGSVDRAVLD-----ML--APWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CTTCEEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCceeEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 56789999983 32 235889999999999999998654
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=125.47 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=90.1
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-C------CCCc
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P-K------ANKY 102 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~-~------~~~f 102 (272)
.++.+|||||||+|..+..+++. + +.+++++|+++.+++.|++++...++.++++++++|+.+. + . .++|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 45679999999999999999987 4 7899999999999999999999999877899999998764 2 1 5789
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
|+|++.... .+...+++++.++|||||++++.+..
T Consensus 158 D~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~ 192 (247)
T 1sui_A 158 DFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_dssp SEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTT
T ss_pred EEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 999986432 34578999999999999999986554
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=121.44 Aligned_cols=96 Identities=21% Similarity=0.275 Sum_probs=82.6
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEech
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGM 110 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~ 110 (272)
.++.+|||+|||+|.++..+++. ++.+++|+|+|+.+++.++++. .++.+..+|+.+++ ++++||+|++..+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 157 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYA 157 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence 57889999999999999999987 5789999999999999998763 36899999999888 6679999998754
Q ss_pred hhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 111 IEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
. ..++++.++|||||++++.++..
T Consensus 158 ~---------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 158 P---------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp C---------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred h---------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 2 35788999999999999976653
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.9e-15 Score=123.74 Aligned_cols=106 Identities=18% Similarity=0.188 Sum_probs=91.7
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEec
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCG 109 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~ 109 (272)
.+.++.+|||+|||+|.++..+++. ...+|+++|+++.+++.++++++.+++. ++.++++|+.+.+..++||+|++..
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~~~~~D~Vi~d~ 194 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVELKDVADRVIMGY 194 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCCTTCEEEEEECC
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCccCCceEEEECC
Confidence 3568899999999999999999997 4679999999999999999999999885 6899999998874346899999986
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
.. ....+++++.+.|+|||.+++++...
T Consensus 195 p~------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 195 VH------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp CS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred cc------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 54 23578889999999999999987763
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-15 Score=121.54 Aligned_cols=120 Identities=20% Similarity=0.289 Sum_probs=93.5
Q ss_pred HHHHcC-CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCcc
Q 024096 26 LIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYD 103 (272)
Q Consensus 26 l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD 103 (272)
+++.+. ..++.+|||+|||+|.++..+ ..+++|+|+|+. ++.+.++|+.+++ ++++||
T Consensus 58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD 117 (215)
T 2zfu_A 58 IARDLRQRPASLVVADFGCGDCRLASSI----RNPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVD 117 (215)
T ss_dssp HHHHHHTSCTTSCEEEETCTTCHHHHHC----CSCEEEEESSCS----------------STTEEESCTTSCSCCTTCEE
T ss_pred HHHHHhccCCCCeEEEECCcCCHHHHHh----hccEEEEeCCCC----------------CceEEEeccccCCCCCCCEe
Confidence 444443 457789999999999998876 368999999986 4678899999887 567899
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCC
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSG 183 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~G 183 (272)
+|++..++++ .+...+++++.++|+|||++++.++.. ...+.+++.. +++++|
T Consensus 118 ~v~~~~~l~~---~~~~~~l~~~~~~L~~gG~l~i~~~~~-----------------------~~~~~~~~~~-~l~~~G 170 (215)
T 2zfu_A 118 VAVFCLSLMG---TNIRDFLEEANRVLKPGGLLKVAEVSS-----------------------RFEDVRTFLR-AVTKLG 170 (215)
T ss_dssp EEEEESCCCS---SCHHHHHHHHHHHEEEEEEEEEEECGG-----------------------GCSCHHHHHH-HHHHTT
T ss_pred EEEEehhccc---cCHHHHHHHHHHhCCCCeEEEEEEcCC-----------------------CCCCHHHHHH-HHHHCC
Confidence 9999999964 466899999999999999999976531 1125666664 445699
Q ss_pred cEEEEEEec
Q 024096 184 LCVEHLENI 192 (272)
Q Consensus 184 f~v~~~~~~ 192 (272)
|.++.....
T Consensus 171 f~~~~~~~~ 179 (215)
T 2zfu_A 171 FKIVSKDLT 179 (215)
T ss_dssp EEEEEEECC
T ss_pred CEEEEEecC
Confidence 999876543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-14 Score=125.29 Aligned_cols=117 Identities=27% Similarity=0.279 Sum_probs=97.8
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KA 99 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~ 99 (272)
...++......++.+|||+|||+|.++..++.. ++.+++|+|+++.+++.|+++++..|+. ++++.++|+.+++ +.
T Consensus 192 a~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 192 AQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGGTC
T ss_pred HHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCcccc
Confidence 355677778888999999999999999999986 3589999999999999999999999987 8999999999987 55
Q ss_pred CCccEEEEechhhccCh------hhHHHHHHHHHhcCccCcEEEEEe
Q 024096 100 NKYDRIISCGMIEHVGH------DYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~------~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+.||+|+++........ +....+++++.++|||||++++.+
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 67999999766533211 123678999999999999999853
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=118.68 Aligned_cols=106 Identities=22% Similarity=0.160 Sum_probs=86.3
Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCC
Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KAN 100 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~ 100 (272)
++.+.+.++.+|||+|||+|.++..+++. ++.+|+|+|+++.+++.++++++.. .+++++++|+.+.. ..+
T Consensus 66 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~ 142 (227)
T 1g8a_A 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCC
T ss_pred HHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccC
Confidence 44445778999999999999999999987 3479999999999999999887654 48999999998732 346
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+||+|++... .......+++++.++|||||++++.
T Consensus 143 ~~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 143 KVDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CEEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 8999998654 1123345699999999999999987
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=118.45 Aligned_cols=111 Identities=14% Similarity=0.264 Sum_probs=92.0
Q ss_pred HHHHHHc--CCCCCCEEEEECCCchHHHHHHHHccC------CEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEEEc
Q 024096 24 SVLIEKA--RVSKGQEVLDIGCGWGTLAIEIVKQTG------CKYTGITLSEEQLKYAEIKVREAGL----QDHIRFYLC 91 (272)
Q Consensus 24 ~~l~~~l--~~~~~~~vLDiG~G~G~~~~~l~~~~~------~~v~gvd~s~~~~~~a~~~~~~~g~----~~~i~~~~~ 91 (272)
..+++.+ .+.++.+|||+|||+|.++..+++..+ .+|+++|+++.+++.+++++...++ .+++.+.++
T Consensus 68 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 147 (227)
T 2pbf_A 68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK 147 (227)
T ss_dssp HHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC
T ss_pred HHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC
Confidence 4555655 467889999999999999999998733 5999999999999999999988773 358999999
Q ss_pred ccCCCC-----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 92 DYRQLP-----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 92 d~~~~~-----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
|+.+.. ..++||+|++...++++. +++.+.|||||++++....
T Consensus 148 d~~~~~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 148 NIYQVNEEEKKELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp CGGGCCHHHHHHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEEE
T ss_pred ChHhcccccCccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEcc
Confidence 988753 346899999998888763 5678899999999997654
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.9e-15 Score=121.63 Aligned_cols=105 Identities=15% Similarity=0.142 Sum_probs=89.8
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--C------CCCc
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--K------ANKY 102 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~------~~~f 102 (272)
.++.+|||||||+|..+..+++. + +.+++++|+++.+++.+++++...|+.++++++++|+.+.. . .++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 45679999999999999999987 4 78999999999999999999999998778999999987642 1 4789
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
|+|++... ......+++++.++|+|||++++.+..
T Consensus 149 D~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~ 183 (237)
T 3c3y_A 149 DFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTL 183 (237)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred CEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 99998643 245578999999999999999986554
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.56 E-value=9.3e-15 Score=119.89 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=91.2
Q ss_pred HHHHHHHc--CCCCCCEEEEECCCchHHHHHHHHccC-------CEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEE
Q 024096 23 VSVLIEKA--RVSKGQEVLDIGCGWGTLAIEIVKQTG-------CKYTGITLSEEQLKYAEIKVREAGL----QDHIRFY 89 (272)
Q Consensus 23 ~~~l~~~l--~~~~~~~vLDiG~G~G~~~~~l~~~~~-------~~v~gvd~s~~~~~~a~~~~~~~g~----~~~i~~~ 89 (272)
...+++.+ .+.++.+|||+|||+|.++..+++..+ .+|+++|+++.+++.+++++...+. ..++.+.
T Consensus 71 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 150 (227)
T 1r18_A 71 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV 150 (227)
T ss_dssp HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEE
Confidence 45566666 467889999999999999999998633 5999999999999999999876541 2479999
Q ss_pred EcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 90 LCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 90 ~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
++|..+.. ..++||+|++..+++++. +++.+.|||||++++...
T Consensus 151 ~~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 151 EGDGRKGYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp ESCGGGCCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred ECCcccCCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 99988733 337899999999988874 568899999999998644
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-13 Score=110.53 Aligned_cols=100 Identities=13% Similarity=0.116 Sum_probs=84.2
Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEE
Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRII 106 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~ 106 (272)
+......++.+|||+|||+|.++..+++....+++|+|+++.+++.+++++..+++ +++++++|+.+++ ++||+|+
T Consensus 42 ~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~D~v~ 117 (207)
T 1wy7_A 42 AYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN--SRVDIVI 117 (207)
T ss_dssp HHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC--CCCSEEE
T ss_pred HHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC--CCCCEEE
Confidence 33445567889999999999999999987335899999999999999999988776 7999999999876 5899999
Q ss_pred EechhhccChhhHHHHHHHHHhcC
Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLL 130 (272)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~L 130 (272)
++..+++........+++++.+.+
T Consensus 118 ~~~p~~~~~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 118 MNPPFGSQRKHADRPFLLKAFEIS 141 (207)
T ss_dssp ECCCCSSSSTTTTHHHHHHHHHHC
T ss_pred EcCCCccccCCchHHHHHHHHHhc
Confidence 999887765444467888888888
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.4e-15 Score=123.80 Aligned_cols=107 Identities=13% Similarity=0.106 Sum_probs=82.5
Q ss_pred HHHHHHHHcCCC-CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEE-EEcccCCCC--
Q 024096 22 KVSVLIEKARVS-KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRF-YLCDYRQLP-- 97 (272)
Q Consensus 22 ~~~~l~~~l~~~-~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~-~~~d~~~~~-- 97 (272)
++..+++.+.+. ++.+|||+|||+|.++..+++....+|+|+|+|+.|++.+.++. .++.. ...|+..++
T Consensus 72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~ni~~l~~~ 145 (291)
T 3hp7_A 72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYNFRYAEPV 145 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC------TTEEEECSCCGGGCCGG
T ss_pred HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cccceecccCceecchh
Confidence 567778888765 57899999999999999999874459999999999998854321 23433 234454443
Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+..+||+|++..+++++ ..+++++.++|||||++++.
T Consensus 146 ~l~~~~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 146 DFTEGLPSFASIDVSFISL-----NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp GCTTCCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEE
T ss_pred hCCCCCCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEE
Confidence 22359999998888766 68999999999999999985
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.4e-15 Score=121.02 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=89.6
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C----CC--CCcc
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P----KA--NKYD 103 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~----~~--~~fD 103 (272)
.++.+|||+|||+|..+..+++. + +.+++++|+++.+++.|++++...++.++++++++|+.+. + .+ ++||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 35679999999999999999987 3 6799999999999999999999888877899999997553 2 12 7899
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
+|++.... .+...+++++.++|+|||++++.+...
T Consensus 151 ~V~~d~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 151 LIFIDADK-----RNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EEEECSCG-----GGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred EEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 99987542 455789999999999999999976553
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.54 E-value=4.1e-14 Score=117.55 Aligned_cols=106 Identities=19% Similarity=0.352 Sum_probs=84.2
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc--------CCCCCeEEEEcccCC-CC---CC
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA--------GLQDHIRFYLCDYRQ-LP---KA 99 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~--------g~~~~i~~~~~d~~~-~~---~~ 99 (272)
.++.+|||||||+|.++..+++. ++.+++|+|+|+.+++.+++++..+ ++ .++.++++|+.+ ++ ..
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhccc
Confidence 46789999999999999999998 5679999999999999999998776 66 479999999887 43 35
Q ss_pred CCccEEEEechhhccChh------hHHHHHHHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGMIEHVGHD------YMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+.+|.|+....-.+.... ....+++++.++|+|||.+++.
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 789999865322211000 0047999999999999999984
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-14 Score=119.66 Aligned_cols=106 Identities=15% Similarity=0.199 Sum_probs=89.9
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---C-C---CCc
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---K-A---NKY 102 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~-~---~~f 102 (272)
..++.+|||+|||+|..+..+++. + +.+++++|+++.+++.++++++..++.++++++++|+.+.. . . ++|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 356789999999999999999987 3 68999999999999999999999988779999999986542 1 1 689
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
|+|++... ......+++++.++|+|||.+++.+..
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 99999654 234578999999999999999986654
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-14 Score=122.20 Aligned_cols=113 Identities=13% Similarity=0.229 Sum_probs=90.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcC----------CCCCeEEEE
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAG----------LQDHIRFYL 90 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g----------~~~~i~~~~ 90 (272)
...+++.+.+.++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++++...+ +..++++++
T Consensus 94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 455777788899999999999999999999987 23799999999999999999987532 235899999
Q ss_pred cccCCCC---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 91 CDYRQLP---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 91 ~d~~~~~---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+|+.+.. ++++||+|++... ....+++++.++|+|||++++....
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDML-------NPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp SCTTCCC-------EEEEEECSS-------STTTTHHHHGGGEEEEEEEEEEESS
T ss_pred CChHHcccccCCCCeeEEEECCC-------CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9998863 3468999998532 1134889999999999999986543
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.9e-14 Score=112.26 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=82.7
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc-c--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 23 VSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ-T--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 23 ~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~-~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
+..+.+++. +.++.+|||+|||+|.++..++++ + +.+|+|+|+|+.. .. +++.++++|+.+.+
T Consensus 10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~ 77 (201)
T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNM 77 (201)
T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSS
T ss_pred HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhh
Confidence 444566655 578899999999999999999987 4 5899999999831 12 47899999998765
Q ss_pred -------------------------CCCCccEEEEechhhccChh--h-------HHHHHHHHHhcCccCcEEEEEeec
Q 024096 98 -------------------------KANKYDRIISCGMIEHVGHD--Y-------MEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 98 -------------------------~~~~fD~V~~~~~~~~~~~~--~-------~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
++++||+|++..++++.+.. + ...+++++.++|||||.+++..+.
T Consensus 78 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 78 NNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp CCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 34689999998876664211 1 124789999999999999985543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9.7e-15 Score=120.64 Aligned_cols=97 Identities=12% Similarity=0.148 Sum_probs=79.9
Q ss_pred CCCEEEEECCCchHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC---C--CCCCcc
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-----TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL---P--KANKYD 103 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-----~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~---~--~~~~fD 103 (272)
++.+|||||||+|..+..+++. ++++|+|+|+++.+++.|+ ++.++++++++|+.+. + ...+||
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~~~~~fD 154 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHLREMAHP 154 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhhccCCCC
Confidence 4679999999999999999885 4789999999999988886 1235899999999885 4 234799
Q ss_pred EEEEechhhccChhhHHHHHHHHHh-cCccCcEEEEEee
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCES-LLATHGLLVLQFI 141 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~-~LkpgG~l~i~~~ 141 (272)
+|++... |. +...+++++.+ +|||||++++.+.
T Consensus 155 ~I~~d~~--~~---~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 155 LIFIDNA--HA---NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEEEESS--CS---SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EEEECCc--hH---hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 9998765 42 45789999997 9999999999654
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=123.28 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=95.9
Q ss_pred HHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--C-C
Q 024096 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--K-A 99 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~-~ 99 (272)
.+...++..++.+|||+|||+|..+..+++. .+ .+++++|+++.+++.++++++..|+. ++.++++|+.+.+ . +
T Consensus 250 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~ 328 (450)
T 2yxl_A 250 VASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEIIGE 328 (450)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSSSCS
T ss_pred HHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchhhcc
Confidence 3455667889999999999999999999987 44 79999999999999999999998884 7999999998876 2 2
Q ss_pred CCccEEEEe------chhhccChh-------h-------HHHHHHHHHhcCccCcEEEEEeecC
Q 024096 100 NKYDRIISC------GMIEHVGHD-------Y-------MEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 100 ~~fD~V~~~------~~~~~~~~~-------~-------~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
++||+|++. +++.+.++. + ...+++++.++|||||++++++.+.
T Consensus 329 ~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 329 EVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp SCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 689999973 233333221 1 1578999999999999999987664
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.8e-14 Score=120.27 Aligned_cols=109 Identities=18% Similarity=0.153 Sum_probs=84.6
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHH---cCCCCCeEEEEcccCCCC---CCCCccE
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVRE---AGLQDHIRFYLCDYRQLP---KANKYDR 104 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~---~g~~~~i~~~~~d~~~~~---~~~~fD~ 104 (272)
..++.+|||||||+|.++..+++. +..+++++|+++.+++.+++++.. ....++++++.+|+.+.. .+++||+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 356789999999999999999987 467999999999999999998742 112358999999987765 3578999
Q ss_pred EEEechhhccChhhH--HHHHHHHHhcCccCcEEEEEe
Q 024096 105 IISCGMIEHVGHDYM--EEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 105 V~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~ 140 (272)
|++.....+.+.... ..+++++.++|||||++++..
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 210 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG 210 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999766554332222 589999999999999999863
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.2e-14 Score=118.61 Aligned_cols=115 Identities=12% Similarity=0.168 Sum_probs=90.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA 99 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~ 99 (272)
...++.+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.++++....+..++++++++|+.+.+.+
T Consensus 14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~ 92 (285)
T 1zq9_A 14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 92 (285)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence 345678888888889999999999999999999997 7799999999999999999987666556899999999887633
Q ss_pred CCccEEEEechhhccChhhHHHHHH--------------HH--HhcCccCcEEE
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFG--------------CC--ESLLATHGLLV 137 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~--------------~~--~~~LkpgG~l~ 137 (272)
.||+|+++...+..+ +....++. ++ +++|+|||.++
T Consensus 93 -~fD~vv~nlpy~~~~-~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 93 -FFDTCVANLPYQISS-PFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp -CCSEEEEECCGGGHH-HHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred -hhcEEEEecCcccch-HHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 799999976554331 11222222 22 35889999764
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=122.13 Aligned_cols=110 Identities=14% Similarity=0.097 Sum_probs=89.4
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEcccCCCC-----CCCCccEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD-HIRFYLCDYRQLP-----KANKYDRII 106 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~-~i~~~~~d~~~~~-----~~~~fD~V~ 106 (272)
.++.+|||+|||+|.++..+++....+|+++|+|+.+++.|+++++.+++.+ +++++++|+.+.. ...+||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 5788999999999999999998633499999999999999999999999865 8999999987632 246899999
Q ss_pred Eechhh-----ccC--hhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 107 SCGMIE-----HVG--HDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 107 ~~~~~~-----~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+..... +.. .+....+++.+.++|+|||.++++...
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 965442 221 134556888899999999999986543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.4e-14 Score=124.90 Aligned_cols=120 Identities=14% Similarity=0.145 Sum_probs=96.5
Q ss_pred HHHHHcCCCCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC
Q 024096 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KAN 100 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~ 100 (272)
.+...+...++.+|||+|||+|+.+..+++. . ..+|+++|+++.+++.++++++..|+. ++.+.++|..+++ .++
T Consensus 96 l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~~~ 174 (456)
T 3m4x_A 96 IVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHFSG 174 (456)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHHTT
T ss_pred HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhccc
Confidence 3445567889999999999999999999987 3 479999999999999999999999985 7999999988765 457
Q ss_pred CccEEEEech------hhccCh--------------hhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 101 KYDRIISCGM------IEHVGH--------------DYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 101 ~fD~V~~~~~------~~~~~~--------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
.||+|++... +.+-++ .....+++++.++|||||++++++.+...
T Consensus 175 ~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 239 (456)
T 3m4x_A 175 FFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP 239 (456)
T ss_dssp CEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG
T ss_pred cCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc
Confidence 8999998643 211110 11237899999999999999998776543
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=123.59 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=94.7
Q ss_pred HHHHHcCCCCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC
Q 024096 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KAN 100 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~ 100 (272)
.+...+...++.+|||+|||+|+.+..+++. . ..+|+++|+|+.+++.++++++..|+. +.++++|+.+++ .++
T Consensus 92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~ 169 (464)
T 3m6w_A 92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGT 169 (464)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCS
T ss_pred HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccc
Confidence 3445667889999999999999999999987 3 369999999999999999999999985 999999988776 357
Q ss_pred CccEEEEech------hhccCh-------h-------hHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 101 KYDRIISCGM------IEHVGH-------D-------YMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 101 ~fD~V~~~~~------~~~~~~-------~-------~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
+||+|++... +.+.++ + ....+++++.++|||||++++++.+.
T Consensus 170 ~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 170 YFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred cCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 8999997432 222111 1 12678999999999999999987664
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.2e-14 Score=110.04 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=87.1
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 22 KVSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 22 ~~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
.+..+++.+. ..++.+|||+|||+|.++..+++. ++.+++++|+++ +++. .++.+.++|+.+.+
T Consensus 9 ~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~ 76 (180)
T 1ej0_A 9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELV 76 (180)
T ss_dssp HHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHH
T ss_pred HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchh
Confidence 3455666665 678899999999999999999987 358999999998 6432 47899999998763
Q ss_pred --------CCCCccEEEEechhhccChhh---------HHHHHHHHHhcCccCcEEEEEeec
Q 024096 98 --------KANKYDRIISCGMIEHVGHDY---------MEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 98 --------~~~~fD~V~~~~~~~~~~~~~---------~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
++++||+|++..++++.+... ...+++++.++|+|||.+++..+.
T Consensus 77 ~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 77 MKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred hhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 347899999988887764321 158899999999999999987654
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-12 Score=113.82 Aligned_cols=102 Identities=18% Similarity=0.252 Sum_probs=87.1
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CCC--CCCccEEEE
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-LPK--ANKYDRIIS 107 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-~~~--~~~fD~V~~ 107 (272)
..++.+|||+| |+|.++..+++. +..+|+++|+++.+++.|+++++.+|+. +++++++|+.+ ++. +++||+|++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEE
Confidence 34678999999 999999999887 4479999999999999999999998886 89999999988 652 468999999
Q ss_pred echhhccChhhHHHHHHHHHhcCccCcEE-EE
Q 024096 108 CGMIEHVGHDYMEEFFGCCESLLATHGLL-VL 138 (272)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l-~i 138 (272)
+.++... ....+++++.++|||||++ ++
T Consensus 248 ~~p~~~~---~~~~~l~~~~~~LkpgG~~~~~ 276 (373)
T 2qm3_A 248 DPPETLE---AIRAFVGRGIATLKGPRCAGYF 276 (373)
T ss_dssp CCCSSHH---HHHHHHHHHHHTBCSTTCEEEE
T ss_pred CCCCchH---HHHHHHHHHHHHcccCCeEEEE
Confidence 8766543 2478999999999999965 44
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-13 Score=119.03 Aligned_cols=112 Identities=29% Similarity=0.283 Sum_probs=88.7
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANK 101 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~ 101 (272)
..++... ..++.+|||+|||+|.++..++.. ...+++|+|+|+.+++.|++++..+|+.+++++.++|+.+++ ++++
T Consensus 208 ~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~ 286 (373)
T 3tm4_A 208 NAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDS 286 (373)
T ss_dssp HHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSC
T ss_pred HHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCC
Confidence 3344444 678899999999999999999987 334999999999999999999999998778999999999988 5689
Q ss_pred ccEEEEechhhccC-----hhh-HHHHHHHHHhcCccCcEEEE
Q 024096 102 YDRIISCGMIEHVG-----HDY-MEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 102 fD~V~~~~~~~~~~-----~~~-~~~~l~~~~~~LkpgG~l~i 138 (272)
||+|+++..+.... .++ ...+++++.++| +|.+++
T Consensus 287 fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~ 327 (373)
T 3tm4_A 287 VDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVF 327 (373)
T ss_dssp EEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEE
T ss_pred cCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEE
Confidence 99999987644321 012 367888888888 444444
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-14 Score=116.09 Aligned_cols=103 Identities=10% Similarity=0.139 Sum_probs=91.2
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272)
.+..+|||||||+|-++..++.. +..+++++|+++.+++.+++++..+|+ +..+.+.|....++.+.||+|++.-++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~--~~~~~v~D~~~~~p~~~~DvaL~lkti 208 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV--PHRTNVADLLEDRLDEPADVTLLLKTL 208 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC--CEEEEECCTTTSCCCSCCSEEEETTCH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeeecccCCCCCcchHHHHHHH
Confidence 45779999999999999999888 788999999999999999999999987 479999998887778899999999999
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+|+.++.....+ ++...|+|+|.++-
T Consensus 209 ~~Le~q~kg~g~-~ll~aL~~~~vvVS 234 (281)
T 3lcv_B 209 PCLETQQRGSGW-EVIDIVNSPNIVVT 234 (281)
T ss_dssp HHHHHHSTTHHH-HHHHHSSCSEEEEE
T ss_pred HHhhhhhhHHHH-HHHHHhCCCCEEEe
Confidence 999655445667 89999999998874
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=124.03 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=94.8
Q ss_pred HHHcCCC--CCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC
Q 024096 27 IEKARVS--KGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KAN 100 (272)
Q Consensus 27 ~~~l~~~--~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~ 100 (272)
...+... ++.+|||+|||+|+.+..+++. . ..+|+++|+++.+++.++++++..|+. ++.++++|+.+++ .++
T Consensus 108 ~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~ 186 (479)
T 2frx_A 108 VAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPE 186 (479)
T ss_dssp HHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTT
T ss_pred HHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhccc
Confidence 3455666 8999999999999999999987 2 479999999999999999999998885 7999999998875 457
Q ss_pred CccEEEEec------hhhccCh-------h-------hHHHHHHHHHhcCccCcEEEEEeecCC
Q 024096 101 KYDRIISCG------MIEHVGH-------D-------YMEEFFGCCESLLATHGLLVLQFISAP 144 (272)
Q Consensus 101 ~fD~V~~~~------~~~~~~~-------~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272)
.||+|++.. ++.+.++ + ....+++++.++|||||++++++.+..
T Consensus 187 ~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~ 250 (479)
T 2frx_A 187 MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN 250 (479)
T ss_dssp CEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred cCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 899999842 2322221 1 135789999999999999999877653
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-14 Score=123.80 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=85.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCC------chHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCG------WGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD 92 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G------~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d 92 (272)
..++.+++.+.. ++.+||||||| +|+.+..+++. ++++|+|+|+|+.+. . ..++++++++|
T Consensus 204 ~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~--~~~rI~fv~GD 272 (419)
T 3sso_A 204 PHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V--DELRIRTIQGD 272 (419)
T ss_dssp HHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G--CBTTEEEEECC
T ss_pred HHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h--cCCCcEEEEec
Confidence 345556666653 46899999999 77777777765 688999999999872 1 12589999999
Q ss_pred cCCCC-C------CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 93 YRQLP-K------ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 93 ~~~~~-~------~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+.+++ . +++||+|++..+ +++ .+....+++++++|||||++++.++.
T Consensus 273 a~dlpf~~~l~~~d~sFDlVisdgs-H~~--~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 273 QNDAEFLDRIARRYGPFDIVIDDGS-HIN--AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp TTCHHHHHHHHHHHCCEEEEEECSC-CCH--HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred ccccchhhhhhcccCCccEEEECCc-ccc--hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 99876 3 589999998754 555 56789999999999999999998765
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.48 E-value=9e-14 Score=109.37 Aligned_cols=122 Identities=19% Similarity=0.159 Sum_probs=91.7
Q ss_pred HcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC----CCCccE
Q 024096 29 KARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK----ANKYDR 104 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~----~~~fD~ 104 (272)
.+++++|.+|||+|||. +++|+|+.+++.|+++.. .++++.++|+.+++. +++||+
T Consensus 7 ~~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~ 66 (176)
T 2ld4_A 7 DFGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAHKESSFDI 66 (176)
T ss_dssp TTTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCCCSSCEEE
T ss_pred ccCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccCCCCCEeE
Confidence 45678999999999986 239999999999998753 258999999988763 578999
Q ss_pred EEEechhhcc-ChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCC
Q 024096 105 IISCGMIEHV-GHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSG 183 (272)
Q Consensus 105 V~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~G 183 (272)
|++..+++|+ ++ ...++++++++|||||++++......... . .....+.+++.+.+ +++|
T Consensus 67 V~~~~~l~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~--------~--------~~~~~~~~~~~~~l-~~aG 127 (176)
T 2ld4_A 67 ILSGLVPGSTTLH--SAEILAEIARILRPGGCLFLKEPVETAVD--------N--------NSKVKTASKLCSAL-TLSG 127 (176)
T ss_dssp EEECCSTTCCCCC--CHHHHHHHHHHEEEEEEEEEEEEEESSSC--------S--------SSSSCCHHHHHHHH-HHTT
T ss_pred EEECChhhhcccC--HHHHHHHHHHHCCCCEEEEEEcccccccc--------c--------ccccCCHHHHHHHH-HHCC
Confidence 9999999998 54 48999999999999999999654321100 0 11223567777554 5699
Q ss_pred cEEEEEEe
Q 024096 184 LCVEHLEN 191 (272)
Q Consensus 184 f~v~~~~~ 191 (272)
| +. +..
T Consensus 128 f-i~-~~~ 133 (176)
T 2ld4_A 128 L-VE-VKE 133 (176)
T ss_dssp C-EE-EEE
T ss_pred C-cE-eec
Confidence 9 55 444
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-13 Score=108.69 Aligned_cols=92 Identities=20% Similarity=0.215 Sum_probs=74.2
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEech
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGM 110 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~ 110 (272)
...++.+|||+|||+|.++..+++....+++|+|+++.+++.+++++. +++++++|+.+++ ++||+|+++.+
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~--~~~D~v~~~~p 119 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS--GKYDTWIMNPP 119 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC--CCEEEEEECCC
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC--CCeeEEEECCC
Confidence 556788999999999999999998733489999999999999998853 6899999999876 78999999999
Q ss_pred hhccChhhHHHHHHHHHhcC
Q 024096 111 IEHVGHDYMEEFFGCCESLL 130 (272)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~~L 130 (272)
++|........+++++.+.+
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 120 FGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp C-------CHHHHHHHHHHE
T ss_pred chhccCchhHHHHHHHHHhc
Confidence 99986433457888888887
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-15 Score=125.38 Aligned_cols=112 Identities=20% Similarity=0.326 Sum_probs=86.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C-C
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-K-A 99 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~-~ 99 (272)
.++.+++.+.+.++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++.. ..++++++++|+.+++ + +
T Consensus 17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~~~~~ 92 (245)
T 1yub_A 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcCcccC
Confidence 4577888888889999999999999999999987 6899999999999999887764 1258999999999987 3 3
Q ss_pred CCccEEEEechhhccChhhH----------HHHH----HHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGMIEHVGHDYM----------EEFF----GCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~----------~~~l----~~~~~~LkpgG~l~i~ 139 (272)
++| .|+++..... ..... ...+ +.+.++|+|||++.+.
T Consensus 93 ~~f-~vv~n~Py~~-~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 93 QRY-KIVGNIPYHL-STQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp SEE-EEEEECCSSS-CHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred CCc-EEEEeCCccc-cHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 578 6777643221 11111 2233 6688999999998763
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.7e-13 Score=120.00 Aligned_cols=118 Identities=18% Similarity=0.211 Sum_probs=95.7
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KA 99 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~ 99 (272)
..+...+...++.+|||+|||+|..+..+++. ++.+++++|+++.+++.+++++...|+ ++.++++|+.+.+ ++
T Consensus 236 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~~ 313 (429)
T 1sqg_A 236 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGE 313 (429)
T ss_dssp HTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTT
T ss_pred HHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhccc
Confidence 44556667889999999999999999999998 457999999999999999999998887 4799999998876 34
Q ss_pred CCccEEEEec------hhhccCh-------h-------hHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 100 NKYDRIISCG------MIEHVGH-------D-------YMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 100 ~~fD~V~~~~------~~~~~~~-------~-------~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
++||+|++.. ++.+.++ + ....+++++.++|||||++++++.+.
T Consensus 314 ~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 314 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 6899999743 3333322 1 12578999999999999999987654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=121.20 Aligned_cols=110 Identities=19% Similarity=0.118 Sum_probs=91.2
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC-CCCeEEEEcccCCCC-----CCCCccEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL-QDHIRFYLCDYRQLP-----KANKYDRII 106 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~-~~~i~~~~~d~~~~~-----~~~~fD~V~ 106 (272)
.++.+|||+|||+|.++..+++....+|+++|+|+.+++.|+++++.+++ .++++++++|+.+.. ..++||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 47889999999999999999986345999999999999999999999998 668999999987754 146899999
Q ss_pred EechhhccC-------hhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 107 SCGMIEHVG-------HDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 107 ~~~~~~~~~-------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+........ .+....++.++.+.|+|||.+++++..
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 975432110 145678999999999999999986544
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=117.12 Aligned_cols=106 Identities=20% Similarity=0.197 Sum_probs=84.9
Q ss_pred CEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEechh
Q 024096 36 QEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCGMI 111 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~~~ 111 (272)
.+|||||||+|.++..+++. ++.+++++|+++.+++.|++++.... .++++++++|..+.. ++++||+|++....
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 49999999999999999995 78899999999999999999875432 358999999987653 35789999996433
Q ss_pred hccChhh--HHHHHHHHHhcCccCcEEEEEeec
Q 024096 112 EHVGHDY--MEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 112 ~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
....... ...++++++++|+|||++++....
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 2211111 268999999999999999987654
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=117.23 Aligned_cols=112 Identities=18% Similarity=0.223 Sum_probs=85.9
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHH--cCC-CCCeEEEEcccCCC-C-CCCCccE
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVRE--AGL-QDHIRFYLCDYRQL-P-KANKYDR 104 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~--~g~-~~~i~~~~~d~~~~-~-~~~~fD~ 104 (272)
....+.+|||||||+|.++..+++. +..+++++|+++.+++.|++++.. .++ .++++++.+|+.+. + .+++||+
T Consensus 92 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~ 171 (304)
T 2o07_A 92 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV 171 (304)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred hCCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceE
Confidence 3456789999999999999999987 457999999999999999998765 333 36899999998763 2 4578999
Q ss_pred EEEechhhccChh--hHHHHHHHHHhcCccCcEEEEEeec
Q 024096 105 IISCGMIEHVGHD--YMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 105 V~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
|++....+..+.. ....+++++.++|+|||++++....
T Consensus 172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 172 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 9996543321111 1257899999999999999986543
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=122.32 Aligned_cols=110 Identities=20% Similarity=0.153 Sum_probs=91.3
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIIS 107 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~ 107 (272)
.++.+|||+|||+|.++..+++....+|+++|+|+.+++.+++++..+++.++++++++|+.+.. ..++||+|++
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 47889999999999999999986334999999999999999999999998668999999987754 2578999999
Q ss_pred echhhccCh-------hhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 108 CGMIEHVGH-------DYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 108 ~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
.......+. +....++.++.++|+|||.+++.+..
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 754322211 44578899999999999999886554
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=118.36 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=86.2
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEcccCCCC---CCCCcc
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA--GL-QDHIRFYLCDYRQLP---KANKYD 103 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~--g~-~~~i~~~~~d~~~~~---~~~~fD 103 (272)
....+.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++... ++ .++++++++|+.+.. ++++||
T Consensus 117 ~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fD 196 (334)
T 1xj5_A 117 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 196 (334)
T ss_dssp TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred hCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCcc
Confidence 3456789999999999999999987 5679999999999999999987652 33 358999999987642 347899
Q ss_pred EEEEechhhccChhh--HHHHHHHHHhcCccCcEEEEE
Q 024096 104 RIISCGMIEHVGHDY--MEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|++......-+.+. ...+++++.++|+|||++++.
T Consensus 197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999965421111111 368999999999999999985
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.4e-15 Score=121.77 Aligned_cols=107 Identities=11% Similarity=0.134 Sum_probs=75.7
Q ss_pred HHHHHHHHcCCC-CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEE-EcccCCCC--
Q 024096 22 KVSVLIEKARVS-KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFY-LCDYRQLP-- 97 (272)
Q Consensus 22 ~~~~l~~~l~~~-~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~-~~d~~~~~-- 97 (272)
++..+++.+.+. ++.+|||+|||+|.++..+++....+|+|+|+|+.|++.++++.. ++... ..++....
T Consensus 24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~~~~~ 97 (232)
T 3opn_A 24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRNAVLA 97 (232)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGGCCGG
T ss_pred HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCc------cccccccceEEEeCHh
Confidence 456777777754 467999999999999999999732599999999999998776432 22211 11221111
Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|.+.+..++.++ ..+++++.++|||||++++.
T Consensus 98 ~~~~~~~d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 98 DFEQGRPSFTSIDVSFISL-----DLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp GCCSCCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEE
T ss_pred HcCcCCCCEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEE
Confidence 11135666666555555 57999999999999999984
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-13 Score=116.60 Aligned_cols=116 Identities=17% Similarity=0.142 Sum_probs=94.2
Q ss_pred HHHHHHc-CCCCCCEEEEECCCchHHHHHHHHc-cC-----CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC
Q 024096 24 SVLIEKA-RVSKGQEVLDIGCGWGTLAIEIVKQ-TG-----CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL 96 (272)
Q Consensus 24 ~~l~~~l-~~~~~~~vLDiG~G~G~~~~~l~~~-~~-----~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 96 (272)
..+++.+ ...++.+|||+|||+|.++..+++. .. .+++|+|+++.+++.|+.++...|+ ++.++++|....
T Consensus 119 ~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~ 196 (344)
T 2f8l_A 119 AYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLAN 196 (344)
T ss_dssp HHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSC
T ss_pred HHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCc
Confidence 4445444 4456789999999999999999887 32 7899999999999999999988776 689999998775
Q ss_pred CCCCCccEEEEechhhccChhhH----------------HHHHHHHHhcCccCcEEEEEee
Q 024096 97 PKANKYDRIISCGMIEHVGHDYM----------------EEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 97 ~~~~~fD~V~~~~~~~~~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
...++||+|+++..+.+++.++. ..++.++.+.|+|||++++..+
T Consensus 197 ~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 197 LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 55678999999998877643322 2589999999999999998654
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-12 Score=116.23 Aligned_cols=114 Identities=18% Similarity=0.262 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272)
Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272)
.....++.+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++.+++. +++++++|+.+..
T Consensus 270 ~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l 347 (433)
T 1uwv_A 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDV 347 (433)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCC
T ss_pred HHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHh
Confidence 34455677888888888899999999999999999987 789999999999999999999999885 8999999998732
Q ss_pred -----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 -----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 -----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+++||+|+++..-... ..+++.+.+ ++|++.++++
T Consensus 348 ~~~~~~~~~fD~Vv~dPPr~g~-----~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 348 TKQPWAKNGFDKVLLDPARAGA-----AGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp SSSGGGTTCCSEEEECCCTTCC-----HHHHHHHHH-HCCSEEEEEE
T ss_pred hhhhhhcCCCCEEEECCCCccH-----HHHHHHHHh-cCCCeEEEEE
Confidence 34689999997655443 245555543 6899888875
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-13 Score=109.66 Aligned_cols=101 Identities=20% Similarity=0.159 Sum_probs=86.8
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIE 112 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~ 112 (272)
.++.+|||+|||+|.++..+. ++.+++++|+++.+++.+++++..++. +..+.++|....++.++||+|++.-+++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCCCCCcchHHHHHHHH
Confidence 567899999999999999877 688999999999999999999988874 6899999999888777999999999999
Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
|+.+......+ ++.+.|+++|.++-
T Consensus 180 ~LE~q~~~~~~-~ll~aL~~~~vvVs 204 (253)
T 3frh_A 180 LLEREQAGSAM-ALLQSLNTPRMAVS 204 (253)
T ss_dssp HHHHHSTTHHH-HHHHHCBCSEEEEE
T ss_pred HhhhhchhhHH-HHHHHhcCCCEEEE
Confidence 98655445555 78889999977653
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.6e-14 Score=120.22 Aligned_cols=107 Identities=22% Similarity=0.311 Sum_probs=82.6
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEcccCCC-C-CCCCccEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA--GL-QDHIRFYLCDYRQL-P-KANKYDRII 106 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~--g~-~~~i~~~~~d~~~~-~-~~~~fD~V~ 106 (272)
..+.+|||||||+|..+..+++. +..+++++|+++.+++.|++++... ++ .++++++.+|+.+. + .+++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 45679999999999999999987 5689999999999999999987543 33 45899999998764 2 457899999
Q ss_pred EechhhccCh-hhH--HHHHHHHHhcCccCcEEEEEe
Q 024096 107 SCGMIEHVGH-DYM--EEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 107 ~~~~~~~~~~-~~~--~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+... .++.. +.. ..+++++.++|+|||++++..
T Consensus 187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8653 33321 222 689999999999999999864
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-13 Score=115.20 Aligned_cols=110 Identities=18% Similarity=0.225 Sum_probs=87.3
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEcccCCCC--CCCCccE
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAG--L-QDHIRFYLCDYRQLP--KANKYDR 104 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g--~-~~~i~~~~~d~~~~~--~~~~fD~ 104 (272)
...++.+|||+|||+|..+..+++. +..+++++|+++.+++.+++++...+ + .++++++.+|+.+.. .+++||+
T Consensus 75 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (283)
T 2i7c_A 75 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDV 154 (283)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred cCCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceE
Confidence 3456789999999999999999987 56799999999999999999875432 1 358999999987643 3578999
Q ss_pred EEEechhhccChhhH--HHHHHHHHhcCccCcEEEEEe
Q 024096 105 IISCGMIEHVGHDYM--EEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 105 V~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~ 140 (272)
|++.....+.+.... ..+++++.+.|+|||++++..
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 999654332222222 689999999999999999864
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-13 Score=117.69 Aligned_cols=109 Identities=21% Similarity=0.227 Sum_probs=87.4
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHH--cC-C-CCCeEEEEcccCCC-C-CCCCccEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVRE--AG-L-QDHIRFYLCDYRQL-P-KANKYDRI 105 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~--~g-~-~~~i~~~~~d~~~~-~-~~~~fD~V 105 (272)
..+.+|||||||+|.++..+++. +..+++++|+++.+++.|++++.. .+ + .++++++.+|+.+. + .+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 45689999999999999999987 567999999999999999998764 22 2 35899999998774 3 45789999
Q ss_pred EEechhhc---cChhh--HHHHHHHHHhcCccCcEEEEEee
Q 024096 106 ISCGMIEH---VGHDY--MEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 106 ~~~~~~~~---~~~~~--~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
++....++ -+... ...+++++.++|||||++++...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 99865543 11111 36899999999999999998643
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.9e-14 Score=119.63 Aligned_cols=107 Identities=21% Similarity=0.334 Sum_probs=85.4
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHH--cCC-CCCeEEEEcccCCCC--CCCCccEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVRE--AGL-QDHIRFYLCDYRQLP--KANKYDRII 106 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~--~g~-~~~i~~~~~d~~~~~--~~~~fD~V~ 106 (272)
..+.+|||+|||+|.++..+++. +..+++++|+++.+++.+++++.. .++ .++++++++|+.+.. .+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 45689999999999999999987 568999999999999999998764 223 358999999987642 457899999
Q ss_pred EechhhccC-hhhH--HHHHHHHHhcCccCcEEEEEe
Q 024096 107 SCGMIEHVG-HDYM--EEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 107 ~~~~~~~~~-~~~~--~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+... .++. .... ..+++++.+.|+|||++++..
T Consensus 195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9753 2221 1222 689999999999999999864
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-13 Score=119.97 Aligned_cols=107 Identities=21% Similarity=0.209 Sum_probs=89.8
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEe
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIISC 108 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~~ 108 (272)
++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.++++++.+++. +++++++|+.+.. ..++||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 7789999999999999999997 779999999999999999999999986 4999999987754 15789999996
Q ss_pred chhhccCh-------hhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 109 GMIEHVGH-------DYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 109 ~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
......+. +....++.++.++|+|||.+++++..
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 54322111 44577999999999999999987554
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.8e-13 Score=107.42 Aligned_cols=110 Identities=24% Similarity=0.326 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 20 MRKVSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 20 ~~~~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
..++..+.+++. +.++.+|||+|||+|.++..+++. +.+|+|+|+++.. .. .+++++++|+.+.+
T Consensus 10 ~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~ 76 (191)
T 3dou_A 10 AFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------EI-AGVRFIRCDIFKETI 76 (191)
T ss_dssp HHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSH
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------cC-CCeEEEEccccCHHH
Confidence 345566777766 468899999999999999999997 8899999999741 22 47999999998865
Q ss_pred C-------C----CCccEEEEechhhccCh---------hhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 98 K-------A----NKYDRIISCGMIEHVGH---------DYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 98 ~-------~----~~fD~V~~~~~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
. . ++||+|++.......+. +....+++.+.++|||||.+++..+.
T Consensus 77 ~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~ 141 (191)
T 3dou_A 77 FDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ 141 (191)
T ss_dssp HHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence 1 1 48999999753322111 12356788899999999999986554
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-13 Score=118.10 Aligned_cols=107 Identities=17% Similarity=0.130 Sum_probs=86.0
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEech
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGM 110 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~ 110 (272)
.+|.+|||+|||+|.++..+++. +++|+++|+|+.+++.++++++.+++.. .+.++|+.+.. ..+.||+|++...
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred cCCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhcCCCCEEEECCC
Confidence 46899999999999999999986 7779999999999999999999998853 56699987753 2344999999765
Q ss_pred hhccCh-------hhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 111 IEHVGH-------DYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 111 ~~~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
...-+. +....+++.+.++|+|||.+++.+..
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 322111 34468899999999999999975544
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-13 Score=117.09 Aligned_cols=108 Identities=20% Similarity=0.227 Sum_probs=83.7
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc--CC--------CCCeEEEEcccCCCC-CCCC
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA--GL--------QDHIRFYLCDYRQLP-KANK 101 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~--g~--------~~~i~~~~~d~~~~~-~~~~ 101 (272)
..+.+|||+|||+|.++..+++.+..+++++|+++.+++.|++++ .. ++ .++++++.+|+.+.. .+++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 456899999999999999999874569999999999999999987 33 22 358999999976532 2478
Q ss_pred ccEEEEechhhccChhh--HHHHHHHHHhcCccCcEEEEEee
Q 024096 102 YDRIISCGMIEHVGHDY--MEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
||+|++....+.-+.+. ...+++++.++|+|||++++...
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 99999976532211122 26789999999999999998643
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.8e-13 Score=125.92 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=90.2
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC--CCCCccEEEEech
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYRQLP--KANKYDRIISCGM 110 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~--~~~~fD~V~~~~~ 110 (272)
+|.+|||+|||+|.++..++.....+|+++|+|+.+++.++++++.+++. ++++++++|+.+.. ..++||+|++...
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 68899999999999999999863347999999999999999999999986 58999999988743 4578999999764
Q ss_pred h-----------hccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 111 I-----------EHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 111 ~-----------~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
. .+. ++...+++.+.++|+|||.++++...
T Consensus 619 ~f~~~~~~~~~~~~~--~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp SBC-------CCBHH--HHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccCCccchhHHHHH--HHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 2 222 45678899999999999999986543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3e-14 Score=120.20 Aligned_cols=116 Identities=14% Similarity=0.120 Sum_probs=83.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH-HcCCCCCeEEE--EcccCCCCC
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVR-EAGLQDHIRFY--LCDYRQLPK 98 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~-~~g~~~~i~~~--~~d~~~~~~ 98 (272)
++..+.+...+.++.+|||+|||+|.++..+++. .+|+|+|+++ +...+++... ......++.++ ++|+.+++
T Consensus 70 KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~- 145 (276)
T 2wa2_A 70 KLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME- 145 (276)
T ss_dssp HHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-
T ss_pred HHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-
Confidence 3566666655678999999999999999999987 6899999998 4322221100 00111268899 99999887
Q ss_pred CCCccEEEEechhhccChhh---H--HHHHHHHHhcCccCc--EEEEEeec
Q 024096 99 ANKYDRIISCGMIEHVGHDY---M--EEFFGCCESLLATHG--LLVLQFIS 142 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~---~--~~~l~~~~~~LkpgG--~l~i~~~~ 142 (272)
+++||+|++..+ ++.+... . ..+++.+.++||||| .+++..+.
T Consensus 146 ~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 146 PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 578999999876 4432211 1 137899999999999 99886554
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.6e-13 Score=115.74 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=87.7
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIE 112 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~ 112 (272)
.++.+|||+|||+|.++.. ++ .+.+|+++|+|+.+++.++++++.+++.++++++++|+.+.. ++||+|++.....
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--~~fD~Vi~dpP~~ 269 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--VKGNRVIMNLPKF 269 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--CCEEEEEECCTTT
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--CCCcEEEECCcHh
Confidence 4788999999999999999 87 478999999999999999999999998778999999998877 8899999964322
Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
. ..+++.+.++|+|||.+++.++.
T Consensus 270 ~------~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 270 A------HKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp G------GGGHHHHHHHEEEEEEEEEEEEE
T ss_pred H------HHHHHHHHHHcCCCCEEEEEEee
Confidence 1 37888899999999999987665
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.7e-14 Score=118.95 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=83.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHH-HHcCCCCCeEEE--EcccCCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKV-REAGLQDHIRFY--LCDYRQLP 97 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~-~~~g~~~~i~~~--~~d~~~~~ 97 (272)
.++..+.+...+.++.+|||+|||+|.++..+++. .+|+|+|+++ +...+++.. .......++.++ ++|+.+++
T Consensus 61 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~ 137 (265)
T 2oxt_A 61 AKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP 137 (265)
T ss_dssp HHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC
T ss_pred HHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC
Confidence 33566667655678999999999999999999986 6899999998 432221110 000011168889 99999887
Q ss_pred CCCCccEEEEechhhccChhh---H--HHHHHHHHhcCccCc--EEEEEeec
Q 024096 98 KANKYDRIISCGMIEHVGHDY---M--EEFFGCCESLLATHG--LLVLQFIS 142 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~---~--~~~l~~~~~~LkpgG--~l~i~~~~ 142 (272)
+++||+|++..+ ++.+... . ..+++.+.++||||| .+++..+.
T Consensus 138 -~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 138 -VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred -CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 578999999876 4433221 1 137899999999999 99886554
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-13 Score=116.21 Aligned_cols=108 Identities=20% Similarity=0.287 Sum_probs=83.2
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHH--cCC-CCCeEEEEcccCCC-C-CCCCccEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVRE--AGL-QDHIRFYLCDYRQL-P-KANKYDRII 106 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~--~g~-~~~i~~~~~d~~~~-~-~~~~fD~V~ 106 (272)
..+.+|||+|||+|.++..+++. +..+|+++|+++.+++.+++++.. .++ .++++++++|+.+. + .+++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 35689999999999999999987 568999999999999999998754 233 35899999997663 3 457899999
Q ss_pred EechhhccChh---hHHHHHHHHHhcCccCcEEEEEe
Q 024096 107 SCGMIEHVGHD---YMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 107 ~~~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+...-.+.... ....+++++.+.|+|||++++..
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 86432212110 12689999999999999999863
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-13 Score=115.07 Aligned_cols=108 Identities=20% Similarity=0.236 Sum_probs=85.2
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEcccCCC-C-CCCCccEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA--GL-QDHIRFYLCDYRQL-P-KANKYDRII 106 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~--g~-~~~i~~~~~d~~~~-~-~~~~fD~V~ 106 (272)
..+.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++++... ++ .++++++.+|+.+. + .+++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 35689999999999999999987 4579999999999999999987542 33 35899999998763 2 357899999
Q ss_pred EechhhccChh--hHHHHHHHHHhcCccCcEEEEEe
Q 024096 107 SCGMIEHVGHD--YMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 107 ~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+.......+.. ....+++++.+.|+|||++++..
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 96543222111 12579999999999999999863
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=111.55 Aligned_cols=90 Identities=19% Similarity=0.278 Sum_probs=74.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
..++.+++.+.+.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+++++...++ ++++++++|+.+.+. .
T Consensus 29 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~-~ 105 (299)
T 2h1r_A 29 GILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF-P 105 (299)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC-C
T ss_pred HHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc-c
Confidence 45677888888889999999999999999999986 78999999999999999999887776 589999999988774 4
Q ss_pred CccEEEEechhhc
Q 024096 101 KYDRIISCGMIEH 113 (272)
Q Consensus 101 ~fD~V~~~~~~~~ 113 (272)
+||+|+++...+.
T Consensus 106 ~~D~Vv~n~py~~ 118 (299)
T 2h1r_A 106 KFDVCTANIPYKI 118 (299)
T ss_dssp CCSEEEEECCGGG
T ss_pred cCCEEEEcCCccc
Confidence 8999999766543
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-12 Score=113.29 Aligned_cols=106 Identities=18% Similarity=0.250 Sum_probs=86.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKY 102 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~f 102 (272)
++.+.+ +.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++..+++. ++++++|+.+..+. +|
T Consensus 282 ~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~~-~f 354 (425)
T 2jjq_A 282 VRKVSE---LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSVK-GF 354 (425)
T ss_dssp HHHHHH---HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCCT-TC
T ss_pred HHHhhc---cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCcc-CC
Confidence 344444 467889999999999999999986 779999999999999999999988874 99999999987643 89
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
|+|++...-.... ..+++.+. .|+|+|.++++.
T Consensus 355 D~Vv~dPPr~g~~----~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 355 DTVIVDPPRAGLH----PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp SEEEECCCTTCSC----HHHHHHHH-HHCCSEEEEEES
T ss_pred CEEEEcCCccchH----HHHHHHHH-hcCCCcEEEEEC
Confidence 9999976644332 24555554 489999999863
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=102.89 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=78.9
Q ss_pred HHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc-cC---------CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEE-Ec
Q 024096 24 SVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ-TG---------CKYTGITLSEEQLKYAEIKVREAGLQDHIRFY-LC 91 (272)
Q Consensus 24 ~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~-~~---------~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~-~~ 91 (272)
..+.+.+. +.++.+|||+|||+|.++..+++. +. .+|+|+|+++.. .. .+++++ .+
T Consensus 11 ~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~ 78 (196)
T 2nyu_A 11 LEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPA 78 (196)
T ss_dssp HHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSC
T ss_pred HHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEec
Confidence 33444444 578899999999999999999988 33 799999999831 12 368889 89
Q ss_pred ccCCCC---------CCCCccEEEEechhhccCh--hhH-------HHHHHHHHhcCccCcEEEEEeec
Q 024096 92 DYRQLP---------KANKYDRIISCGMIEHVGH--DYM-------EEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 92 d~~~~~---------~~~~fD~V~~~~~~~~~~~--~~~-------~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
|+.+.+ ++++||+|++..+++.... .+. ..+++++.++|||||++++..+.
T Consensus 79 d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 79 DVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp CTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 976643 2358999999765443211 111 47899999999999999987553
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.4e-12 Score=111.33 Aligned_cols=118 Identities=21% Similarity=0.260 Sum_probs=96.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cC--------------------------------------CEEEE
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TG--------------------------------------CKYTG 62 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~--------------------------------------~~v~g 62 (272)
....++...+..++.+|||++||+|.+++.++.. .+ .+|+|
T Consensus 183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 3455777778888999999999999999988775 22 57999
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhc-cC-hhhHHHHHHHHHhcCcc--CcEEEE
Q 024096 63 ITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH-VG-HDYMEEFFGCCESLLAT--HGLLVL 138 (272)
Q Consensus 63 vd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~-~~-~~~~~~~l~~~~~~Lkp--gG~l~i 138 (272)
+|+++.+++.|++++..+|+.+++++.++|+.+++.+.+||+|+++..+.. ++ .++...+.+++.+.||+ |+.+++
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 342 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYL 342 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 999999999999999999987789999999999886679999999887532 22 13456777777777776 888777
Q ss_pred E
Q 024096 139 Q 139 (272)
Q Consensus 139 ~ 139 (272)
.
T Consensus 343 i 343 (385)
T 3ldu_A 343 I 343 (385)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-12 Score=116.43 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=96.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--------------cCCEEEEEcCCHHHHHHHHHHHHHcCCCC-Ce
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--------------TGCKYTGITLSEEQLKYAEIKVREAGLQD-HI 86 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--------------~~~~v~gvd~s~~~~~~a~~~~~~~g~~~-~i 86 (272)
..+.+++.+...++.+|||.|||+|+++..+++. ...+++|+|+++.+++.|+.++...|+.. ++
T Consensus 159 v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~ 238 (445)
T 2okc_A 159 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 238 (445)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCC
Confidence 3456667777778889999999999999888764 23679999999999999999998888743 67
Q ss_pred EEEEcccCCCCCCCCccEEEEechhhccChhh---------------HHHHHHHHHhcCccCcEEEEEee
Q 024096 87 RFYLCDYRQLPKANKYDRIISCGMIEHVGHDY---------------MEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 87 ~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~~~---------------~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
.+.++|....+...+||+|+++..+.+..... ...++.++.+.|||||++++..+
T Consensus 239 ~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 239 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 89999988877556899999998877643211 13789999999999999988654
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-11 Score=105.08 Aligned_cols=89 Identities=21% Similarity=0.254 Sum_probs=77.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-K 98 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~ 98 (272)
...++.+++.+.+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++... ++++++++|+.+++ +
T Consensus 36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~~~ 111 (295)
T 3gru_A 36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVDLN 111 (295)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSCGG
T ss_pred HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCCcc
Confidence 345678899999999999999999999999999997 789999999999999999998743 48999999999987 4
Q ss_pred CCCccEEEEechhh
Q 024096 99 ANKYDRIISCGMIE 112 (272)
Q Consensus 99 ~~~fD~V~~~~~~~ 112 (272)
+..||+|+++...+
T Consensus 112 ~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 112 KLDFNKVVANLPYQ 125 (295)
T ss_dssp GSCCSEEEEECCGG
T ss_pred cCCccEEEEeCccc
Confidence 56799999886544
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.3e-12 Score=110.71 Aligned_cols=118 Identities=15% Similarity=0.206 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cC--------------------------------------CEEEE
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TG--------------------------------------CKYTG 62 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~--------------------------------------~~v~g 62 (272)
....++...+..++.+|||.+||+|.+++.++.. .+ .+|+|
T Consensus 189 lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 189 MAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 3455777778888999999999999999888875 22 46999
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhc-cCh-hhHHHHHHHHHhcCcc--CcEEEE
Q 024096 63 ITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH-VGH-DYMEEFFGCCESLLAT--HGLLVL 138 (272)
Q Consensus 63 vd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~-~~~-~~~~~~l~~~~~~Lkp--gG~l~i 138 (272)
+|+++.+++.|++++..+|+.+++++.++|+.+++.+++||+|+++..+.. +++ ++...+.+.+.+.||+ ||.+++
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 348 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYV 348 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEE
Confidence 999999999999999999998789999999999886679999999976532 221 3455667777777766 888887
Q ss_pred E
Q 024096 139 Q 139 (272)
Q Consensus 139 ~ 139 (272)
.
T Consensus 349 i 349 (393)
T 3k0b_A 349 L 349 (393)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-11 Score=107.85 Aligned_cols=118 Identities=15% Similarity=0.194 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cC--------------------------------------CEEEE
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TG--------------------------------------CKYTG 62 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~--------------------------------------~~v~g 62 (272)
....++......++..|||.+||+|.+++.++.. .+ .+++|
T Consensus 182 LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G 261 (384)
T 3ldg_A 182 MAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG 261 (384)
T ss_dssp HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 3455677778888999999999999999988865 22 46999
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhc-cC-hhhHHHHHHHHHhcCcc--CcEEEE
Q 024096 63 ITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH-VG-HDYMEEFFGCCESLLAT--HGLLVL 138 (272)
Q Consensus 63 vd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~-~~-~~~~~~~l~~~~~~Lkp--gG~l~i 138 (272)
+|+++.+++.|++++..+|+.+++++.++|+.+++...+||+|+++..+.. ++ .++...+.+.+.+.||+ ||.+++
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 341 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFI 341 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 999999999999999999998889999999999886579999999976532 22 24567777777777776 888887
Q ss_pred E
Q 024096 139 Q 139 (272)
Q Consensus 139 ~ 139 (272)
.
T Consensus 342 i 342 (384)
T 3ldg_A 342 L 342 (384)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.9e-12 Score=104.89 Aligned_cols=86 Identities=20% Similarity=0.334 Sum_probs=70.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-K 98 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~ 98 (272)
...++.+++.++..++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.++++.... ++++++++|+.+++ +
T Consensus 16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~ 91 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFP 91 (244)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCC
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc-CCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCcc
Confidence 455677888888888999999999999999999987 689999999999999999887532 48999999999987 3
Q ss_pred C-CCccEEEEech
Q 024096 99 A-NKYDRIISCGM 110 (272)
Q Consensus 99 ~-~~fD~V~~~~~ 110 (272)
+ ..| .|+++..
T Consensus 92 ~~~~~-~vv~nlP 103 (244)
T 1qam_A 92 KNQSY-KIFGNIP 103 (244)
T ss_dssp SSCCC-EEEEECC
T ss_pred cCCCe-EEEEeCC
Confidence 2 345 4565543
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.3e-11 Score=101.87 Aligned_cols=117 Identities=13% Similarity=0.050 Sum_probs=89.6
Q ss_pred HHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC---
Q 024096 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA--- 99 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~--- 99 (272)
.+...+...++.+|||+|||+|+.+..+++. ...+|+++|+++.+++.++++++..|+. +++++++|+.+++..
T Consensus 93 l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~ 171 (309)
T 2b9e_A 93 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPR 171 (309)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGG
T ss_pred HHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCccccc
Confidence 3445667889999999999999999999986 3479999999999999999999999884 799999999887622
Q ss_pred -CCccEEEEec------hhhccCh---------hh-------HHHHHHHHHhcCccCcEEEEEeecC
Q 024096 100 -NKYDRIISCG------MIEHVGH---------DY-------MEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 100 -~~fD~V~~~~------~~~~~~~---------~~-------~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
.+||.|++.. ++..-++ ++ ...+++.+.++++ ||+++.++.+.
T Consensus 172 ~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 172 YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp GTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred cCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 5799999742 2221111 11 2356888888887 99998876653
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.4e-12 Score=112.63 Aligned_cols=111 Identities=19% Similarity=0.301 Sum_probs=87.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA 99 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~ 99 (272)
..+.+++.+...++.+|||+|||+|.++..++++ .+.+++|+|+++.+++.| .++.++++|+.+....
T Consensus 27 l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~~~ 96 (421)
T 2ih2_A 27 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWEPG 96 (421)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCCS
T ss_pred HHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcCcc
Confidence 3456777776656779999999999999999986 468999999999988776 3789999999887766
Q ss_pred CCccEEEEechhhcc----------Chhh-----------------HHHHHHHHHhcCccCcEEEEEeec
Q 024096 100 NKYDRIISCGMIEHV----------GHDY-----------------MEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~----------~~~~-----------------~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
++||+|+++..+... .++. ...+++++.++|+|||++++..+.
T Consensus 97 ~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 97 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 799999997654322 1111 126789999999999999986554
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-12 Score=106.31 Aligned_cols=98 Identities=14% Similarity=-0.025 Sum_probs=80.5
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH--cCC-CCCeEEEEcccCCCCCCCCccEEEEec
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVRE--AGL-QDHIRFYLCDYRQLPKANKYDRIISCG 109 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~--~g~-~~~i~~~~~d~~~~~~~~~fD~V~~~~ 109 (272)
..+.+|||||||+|.++..+++. +.+++++|+++.+++.|++++.. .++ .++++++.+|..+.. ++||+|++..
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~d~ 147 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFCLQ 147 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEESS
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEECC
Confidence 45689999999999999999887 48999999999999999886532 111 258999999998876 7899999862
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
++ +..+++++.+.|+|||.+++..
T Consensus 148 -----~d--p~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 -----EP--DIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----CC--CHHHHHHHHTTEEEEEEEEEEE
T ss_pred -----CC--hHHHHHHHHHhcCCCcEEEEEc
Confidence 21 2458999999999999999864
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-12 Score=112.20 Aligned_cols=113 Identities=13% Similarity=0.158 Sum_probs=78.5
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcC----CHHHHHHHHHHHHHcCCCCCeEEEEc-ccCCCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITL----SEEQLKYAEIKVREAGLQDHIRFYLC-DYRQLP 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~----s~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~~~ 97 (272)
+..+.++..+.++.+|||+|||+|.++..+++. .+|+|+|+ ++.+++.+. .+..+ .+++.++++ |+..++
T Consensus 71 L~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l~ 145 (305)
T 2p41_A 71 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFIP 145 (305)
T ss_dssp HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTSC
T ss_pred HHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccCC
Confidence 344555544578899999999999999999987 58999998 554332111 01111 147899999 888775
Q ss_pred CCCCccEEEEechhh---ccChhh-HHHHHHHHHhcCccCcEEEEEee
Q 024096 98 KANKYDRIISCGMIE---HVGHDY-MEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~---~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
.++||+|+|..++. +..+.. ...+++.+.++|||||.+++..+
T Consensus 146 -~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 146 -PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp -CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred -cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 46899999976653 211111 11578889999999999988544
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=103.65 Aligned_cols=98 Identities=19% Similarity=0.219 Sum_probs=73.2
Q ss_pred HcCCCCCCEEEEECC------CchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEE-EEcccCCCCCC
Q 024096 29 KARVSKGQEVLDIGC------GWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRF-YLCDYRQLPKA 99 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~------G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~-~~~d~~~~~~~ 99 (272)
.+.+.++.+|||+|| |+|. ..+++. + +.+|+|+|+++. + .++++ +++|+.+++..
T Consensus 58 ~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~~~~ 121 (290)
T 2xyq_A 58 TLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTLIGDCATVHTA 121 (290)
T ss_dssp CCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEEESCGGGCCCS
T ss_pred hcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEEECccccCCcc
Confidence 346788999999999 5577 444544 3 589999999987 1 26788 99999987755
Q ss_pred CCccEEEEechhhc--------cC-hhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 100 NKYDRIISCGMIEH--------VG-HDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 100 ~~fD~V~~~~~~~~--------~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
++||+|+++...+. .. ......+++++.++|||||++++..+.
T Consensus 122 ~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~ 173 (290)
T 2xyq_A 122 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 173 (290)
T ss_dssp SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 78999999743221 10 123458999999999999999986543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.2e-11 Score=104.64 Aligned_cols=110 Identities=8% Similarity=0.169 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272)
...+..+++.+... +.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|+++++.+++ ++++++++|+.+..
T Consensus 200 ~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~~~~ 276 (369)
T 3bt7_A 200 IQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQA 276 (369)
T ss_dssp HHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHHHHHH
T ss_pred HHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHHHHHH
Confidence 44567777777654 578999999999999999885 67999999999999999999999998 48999999987653
Q ss_pred -CC--------------CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 98 -KA--------------NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 98 -~~--------------~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
.. .+||+|++...-.. +.+++.+.|+++|++++.+
T Consensus 277 ~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g--------~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 277 MNGVREFNRLQGIDLKSYQCETIFVDPPRSG--------LDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp HSSCCCCTTGGGSCGGGCCEEEEEECCCTTC--------CCHHHHHHHTTSSEEEEEE
T ss_pred HhhccccccccccccccCCCCEEEECcCccc--------cHHHHHHHHhCCCEEEEEE
Confidence 11 37999998754332 2234455566888887643
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-11 Score=105.88 Aligned_cols=100 Identities=17% Similarity=0.079 Sum_probs=84.3
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc---------------CCCCCeEEEEcccCCCC
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA---------------GLQDHIRFYLCDYRQLP 97 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~---------------g~~~~i~~~~~d~~~~~ 97 (272)
++.+|||+|||+|..+..++++ ++.+|+++|+++..++.+++|++.+ ++. +++++++|+.++.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHH
Confidence 6789999999999999999998 5679999999999999999999998 774 4999999987764
Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
..+.||+|+... ... ...+++.+.+.|||||.++++.
T Consensus 126 ~~~~~~fD~I~lDP-~~~-----~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 126 AERHRYFHFIDLDP-FGS-----PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHSTTCEEEEEECC-SSC-----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhccCCCCEEEeCC-CCC-----HHHHHHHHHHhcCCCCEEEEEe
Confidence 246899999754 221 2578888999999999888854
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=108.29 Aligned_cols=102 Identities=12% Similarity=0.074 Sum_probs=85.4
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCC-eEEEEcccCCCCC---CCCccEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TG-CKYTGITLSEEQLKYAEIKVREAGLQDH-IRFYLCDYRQLPK---ANKYDRII 106 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~-i~~~~~d~~~~~~---~~~fD~V~ 106 (272)
.++.+|||++||+|.+++.++++ .+ .+|+++|+++..++.+++|++.+++.++ ++++++|+.+... .+.||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 46889999999999999999986 35 5899999999999999999999999766 9999999865421 35799999
Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+.. . .. ...+++.+.+.|+|||.++++.
T Consensus 131 lDP-~-g~----~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP-F-GT----PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC-S-SC----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC-C-cC----HHHHHHHHHHHhCCCCEEEEEe
Confidence 876 1 11 2468888999999999888865
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.9e-09 Score=90.26 Aligned_cols=219 Identities=10% Similarity=0.097 Sum_probs=123.5
Q ss_pred HHHHHHHHHHcCCCC-----CCEEEEECCCchHHHHHHHHc----------------cCCEEEEEcCCHHHHHHHHHHHH
Q 024096 20 MRKVSVLIEKARVSK-----GQEVLDIGCGWGTLAIEIVKQ----------------TGCKYTGITLSEEQLKYAEIKVR 78 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~-----~~~vLDiG~G~G~~~~~l~~~----------------~~~~v~gvd~s~~~~~~a~~~~~ 78 (272)
...+...++.+...+ ..+|+|+|||+|.++..++.. +..+|...|+-.......=+.+.
T Consensus 33 ~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~ 112 (374)
T 3b5i_A 33 LHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLP 112 (374)
T ss_dssp HHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSC
T ss_pred HHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhh
Confidence 444555666666543 579999999999999887321 34677788875543322211111
Q ss_pred Hc-----------CC--CC-CeEEEEcccCCCC-CCCCccEEEEechhhccCh---------------------------
Q 024096 79 EA-----------GL--QD-HIRFYLCDYRQLP-KANKYDRIISCGMIEHVGH--------------------------- 116 (272)
Q Consensus 79 ~~-----------g~--~~-~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~--------------------------- 116 (272)
.. +. .. -+..+.+.+-.-. +++++|+|+|+.++|++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v 192 (374)
T 3b5i_A 113 PLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKT 192 (374)
T ss_dssp CBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHH
T ss_pred hhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHH
Confidence 10 00 00 1222333333333 6799999999999999851
Q ss_pred ---------hhHHHHHHHHHhcCccCcEEEEEeecCCCCcccc-----------ccC------cc-----hhhhhcccCC
Q 024096 117 ---------DYMEEFFGCCESLLATHGLLVLQFISAPDQCYDE-----------YRL------SP-----GFIKEYIFPG 165 (272)
Q Consensus 117 ---------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------~~~------~~-----~~~~~~~~p~ 165 (272)
+|+..+++..++.|+|||+++++....++..... +.. .. ..+.....|
T Consensus 193 ~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P- 271 (374)
T 3b5i_A 193 TTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIP- 271 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCcc-
Confidence 2566789999999999999999887765431100 000 00 001111112
Q ss_pred CCCCCHHHHHHHhhcCCCcEEEEEEecCccH----------HHHHHHHHHHHHhhHHHHHhccCChHHHH-HHHHHHHHH
Q 024096 166 GCLPSLGRVTSAMTSSSGLCVEHLENIGIHY----------YQTLRCWRKNFMGKQSEILALGFNEKFIR-TWEYYFDYC 234 (272)
Q Consensus 166 ~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~w~~~~~~~ 234 (272)
.+.|+.+++...+.++.||.+..++.+...+ ...-..+...+.+..+-+....|++.... ++..|....
T Consensus 272 ~y~ps~~E~~~~l~~~~~F~I~~le~~~~~~~~~~~~~~~~~~~g~~~a~~~Ra~~e~ll~~hfg~~i~d~lf~ry~~~~ 351 (374)
T 3b5i_A 272 VYAPSLQDFKEVVDANGSFAIDKLVVYKGGSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESRA 351 (374)
T ss_dssp BCCCCHHHHHHHHHHHCSEEEEEEEEEECCCCCCCSSTTCHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHhcCCcEEEEEEEEeecCCccccccchhHHHHHHHHHHHHHhccchhHhhccHHHHHHHHHHHHHHH
Confidence 2458899998777657999998877653110 11112222222222333344457765544 366665555
Q ss_pred HHHHh
Q 024096 235 AASFK 239 (272)
Q Consensus 235 ~~~f~ 239 (272)
+....
T Consensus 352 ~~~~~ 356 (374)
T 3b5i_A 352 TSHAK 356 (374)
T ss_dssp HHTCH
T ss_pred HHhHH
Confidence 55444
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=9.6e-11 Score=97.53 Aligned_cols=86 Identities=14% Similarity=0.220 Sum_probs=72.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C-
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-K- 98 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~- 98 (272)
..++.+++.+++.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++++|+.+++ +
T Consensus 16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~ 91 (255)
T 3tqs_A 16 FVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFSS 91 (255)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGGG
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHHH
Confidence 45677889999999999999999999999999987 68999999999999999998764 258999999999987 2
Q ss_pred ---CCCccEEEEechh
Q 024096 99 ---ANKYDRIISCGMI 111 (272)
Q Consensus 99 ---~~~fD~V~~~~~~ 111 (272)
+++|| |+++...
T Consensus 92 ~~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 92 VKTDKPLR-VVGNLPY 106 (255)
T ss_dssp SCCSSCEE-EEEECCH
T ss_pred hccCCCeE-EEecCCc
Confidence 34688 6666543
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-11 Score=101.79 Aligned_cols=88 Identities=13% Similarity=0.104 Sum_probs=71.2
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCH-------HHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSE-------EQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~-------~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
+.+.+...++.+|||+|||+|..+..+++. +++|+++|+++ .+++.++++++.+++.++++++++|+.+..
T Consensus 75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~ 153 (258)
T 2r6z_A 75 IAKAVNHTAHPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMP 153 (258)
T ss_dssp HHHHTTGGGCCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHH
T ss_pred HHHHhCcCCcCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHH
Confidence 344445567789999999999999999996 78999999999 999999998887776557999999998753
Q ss_pred --CC--CCccEEEEechhhcc
Q 024096 98 --KA--NKYDRIISCGMIEHV 114 (272)
Q Consensus 98 --~~--~~fD~V~~~~~~~~~ 114 (272)
++ ++||+|++..++.+.
T Consensus 154 ~~~~~~~~fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 154 ALVKTQGKPDIVYLDPMYPER 174 (258)
T ss_dssp HHHHHHCCCSEEEECCCC---
T ss_pred hhhccCCCccEEEECCCCCCc
Confidence 22 689999998776653
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-10 Score=97.43 Aligned_cols=87 Identities=18% Similarity=0.231 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-K 98 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~ 98 (272)
...++.+++.+++.++ +|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .+++++++|+.+.+ +
T Consensus 33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~ 106 (271)
T 3fut_A 33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWE 106 (271)
T ss_dssp HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGG
T ss_pred HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChh
Confidence 3456788899999999 9999999999999999997 68999999999999999988752 48999999999887 2
Q ss_pred C-CCccEEEEechhh
Q 024096 99 A-NKYDRIISCGMIE 112 (272)
Q Consensus 99 ~-~~fD~V~~~~~~~ 112 (272)
+ ..+|.|+++...+
T Consensus 107 ~~~~~~~iv~NlPy~ 121 (271)
T 3fut_A 107 EVPQGSLLVANLPYH 121 (271)
T ss_dssp GSCTTEEEEEEECSS
T ss_pred hccCccEEEecCccc
Confidence 2 3689999886644
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=107.26 Aligned_cols=103 Identities=16% Similarity=0.170 Sum_probs=82.8
Q ss_pred CCCEEEEECCCchHHHHHHHH---ccCC--EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEe
Q 024096 34 KGQEVLDIGCGWGTLAIEIVK---QTGC--KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISC 108 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~---~~~~--~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~ 108 (272)
.+..|||+|||+|.++...++ +.+. +|++||.|+ +...+++..+.+++.++|+++++|++++..++++|+|+|.
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSE 435 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSE 435 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECC
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEE
Confidence 346899999999998544433 3333 789999997 6778888899999999999999999999877899999997
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
.+-.....+.....+....+.|||||.++
T Consensus 436 wMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 436 LLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred cCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 65444444555677888889999999875
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.7e-10 Score=90.23 Aligned_cols=113 Identities=9% Similarity=0.074 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--CCCeEEEEcc
Q 024096 15 LEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL--QDHIRFYLCD 92 (272)
Q Consensus 15 l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~--~~~i~~~~~d 92 (272)
+...+.+.+...+ .+..+|||+||| ..+.++++..+.+|+.+|.+++..+.++++++..|+ .++++++.+|
T Consensus 16 v~~~~~~~L~~~l-----~~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gd 88 (202)
T 3cvo_A 16 MPPAEAEALRMAY-----EEAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTD 88 (202)
T ss_dssp SCHHHHHHHHHHH-----HHCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECC
T ss_pred CCHHHHHHHHHHh-----hCCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 3344555444422 246799999985 677888875578999999999999999999999998 7899999999
Q ss_pred cCCC---------------C----------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 93 YRQL---------------P----------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 93 ~~~~---------------~----------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
+.+. + ..++||+|++..-. ....+..+.+.|+|||++++.++
T Consensus 89 a~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv~DNv 155 (202)
T 3cvo_A 89 IGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLLFDDY 155 (202)
T ss_dssp CSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEEETTG
T ss_pred chhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEEEeCC
Confidence 6542 1 23689999997521 13566667799999999987443
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=6e-11 Score=101.03 Aligned_cols=86 Identities=29% Similarity=0.432 Sum_probs=74.2
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---C
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---K 98 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~ 98 (272)
++.+++.+.+.++.+|||+|||+|..+..+++. ++.+|+|+|+|+.+++.|++++...+ ++++++++|+.+++ .
T Consensus 15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~ 92 (301)
T 1m6y_A 15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLK 92 (301)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHH
Confidence 456777788889999999999999999999998 56899999999999999999988776 58999999998875 1
Q ss_pred ---CCCccEEEEech
Q 024096 99 ---ANKYDRIISCGM 110 (272)
Q Consensus 99 ---~~~fD~V~~~~~ 110 (272)
..+||.|++...
T Consensus 93 ~~g~~~~D~Vl~D~g 107 (301)
T 1m6y_A 93 TLGIEKVDGILMDLG 107 (301)
T ss_dssp HTTCSCEEEEEEECS
T ss_pred hcCCCCCCEEEEcCc
Confidence 158999998654
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.9e-10 Score=91.73 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272)
...++.+++.+...++.+|||+|||+|.++..+++.+..+++++|+++.+++.++++ . ..+++++++|+.+++
T Consensus 17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~--~---~~~v~~i~~D~~~~~ 89 (249)
T 3ftd_A 17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI--G---DERLEVINEDASKFP 89 (249)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS--C---CTTEEEECSCTTTCC
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc--c---CCCeEEEEcchhhCC
Confidence 345678899999889999999999999999999987448999999999999999876 1 248999999999987
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=7.2e-09 Score=90.63 Aligned_cols=154 Identities=17% Similarity=0.169 Sum_probs=96.5
Q ss_pred CCEEEEECCCchHHHHHHHHc------------------cCCEEEEEcCC-----------HHHHHHHHHHHHHcCCCCC
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ------------------TGCKYTGITLS-----------EEQLKYAEIKVREAGLQDH 85 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~------------------~~~~v~gvd~s-----------~~~~~~a~~~~~~~g~~~~ 85 (272)
..+|+|+||++|.++..+.+. +..+|+..|+- +...+..+ ...|...+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~---~~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLE---KENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHH---HHTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhh---hhccCCCC
Confidence 579999999999998877653 34678888886 43333221 12232112
Q ss_pred eEEEEcccCC---CC-CCCCccEEEEechhhccChh-------------------------------------hHHHHHH
Q 024096 86 IRFYLCDYRQ---LP-KANKYDRIISCGMIEHVGHD-------------------------------------YMEEFFG 124 (272)
Q Consensus 86 i~~~~~d~~~---~~-~~~~fD~V~~~~~~~~~~~~-------------------------------------~~~~~l~ 124 (272)
..|+.+.... -. +++++|+|+|+.++||+++. |+..+|+
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3555554333 22 77999999999999997432 1223477
Q ss_pred HHHhcCccCcEEEEEeecCCCC--ccc---cccCcc-----------hhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEE
Q 024096 125 CCESLLATHGLLVLQFISAPDQ--CYD---EYRLSP-----------GFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEH 188 (272)
Q Consensus 125 ~~~~~LkpgG~l~i~~~~~~~~--~~~---~~~~~~-----------~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~ 188 (272)
..++.|+|||+++++....+.. .+. .+.... ..+.....| .+.|+.+++...+.++.+|.+..
T Consensus 210 ~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P-~y~ps~~E~~~~le~~g~F~i~~ 288 (384)
T 2efj_A 210 IHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVP-IYAPSTEEVKRIVEEEGSFEILY 288 (384)
T ss_dssp HHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCS-BCCCCHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCc-ccCCCHHHHHHHHHHcCCceEEE
Confidence 7799999999999987776554 111 110000 011112223 35689999987676656799888
Q ss_pred EEec
Q 024096 189 LENI 192 (272)
Q Consensus 189 ~~~~ 192 (272)
++.+
T Consensus 289 le~~ 292 (384)
T 2efj_A 289 LETF 292 (384)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7664
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.1e-10 Score=93.46 Aligned_cols=71 Identities=14% Similarity=0.300 Sum_probs=62.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCE----EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCK----YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL 96 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~----v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 96 (272)
..++.+++.+.+.++.+|||||||+|.++..+++. +.+ |+++|+++.+++.++++. ..+++++++|+.++
T Consensus 29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~ 102 (279)
T 3uzu_A 29 GVIDAIVAAIRPERGERMVEIGPGLGALTGPVIAR-LATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTF 102 (279)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHH-HCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGC
T ss_pred HHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHh-CCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcC
Confidence 45677888999899999999999999999999987 334 999999999999999883 25899999999998
Q ss_pred C
Q 024096 97 P 97 (272)
Q Consensus 97 ~ 97 (272)
+
T Consensus 103 ~ 103 (279)
T 3uzu_A 103 D 103 (279)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.6e-10 Score=103.16 Aligned_cols=118 Identities=12% Similarity=0.036 Sum_probs=92.8
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-c------------------CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-T------------------GCKYTGITLSEEQLKYAEIKVREAGLQD 84 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~------------------~~~v~gvd~s~~~~~~a~~~~~~~g~~~ 84 (272)
+.|++.+...++.+|||.|||+|+++..+++. . ...++|+|+++.++..|+.++...|+..
T Consensus 159 ~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~ 238 (541)
T 2ar0_A 159 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG 238 (541)
T ss_dssp HHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCc
Confidence 45666677778899999999999999887764 1 2479999999999999999998887753
Q ss_pred ----CeEEEEcccCCCC--CCCCccEEEEechhhccCh------------hhHHHHHHHHHhcCccCcEEEEEee
Q 024096 85 ----HIRFYLCDYRQLP--KANKYDRIISCGMIEHVGH------------DYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 85 ----~i~~~~~d~~~~~--~~~~fD~V~~~~~~~~~~~------------~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
++.+.++|....+ ...+||+|+++..+..... +....++.++.+.|+|||++++..+
T Consensus 239 ~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 239 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp BGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 2788999987654 4578999999987765421 1123789999999999999988644
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-09 Score=101.70 Aligned_cols=119 Identities=20% Similarity=0.241 Sum_probs=91.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-------------------------------------------cCC
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-------------------------------------------TGC 58 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-------------------------------------------~~~ 58 (272)
....++...+..++.+|||.+||+|.+++.++.. +..
T Consensus 178 LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 178 LAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 3455677777788899999999999999887754 125
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C--CCCccEEEEechhhc-cC-hhhHHHHHHHHHhcC---
Q 024096 59 KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-K--ANKYDRIISCGMIEH-VG-HDYMEEFFGCCESLL--- 130 (272)
Q Consensus 59 ~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~--~~~fD~V~~~~~~~~-~~-~~~~~~~l~~~~~~L--- 130 (272)
+++|+|+++.+++.|+.++..+|+.+.+++.++|+.++. + .++||+|+++..... ++ .++...+.+.+.+.|
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999878999999999875 2 238999999976532 22 234455555555444
Q ss_pred ccCcEEEEEe
Q 024096 131 ATHGLLVLQF 140 (272)
Q Consensus 131 kpgG~l~i~~ 140 (272)
.|||.+++.+
T Consensus 338 ~~g~~~~ilt 347 (703)
T 3v97_A 338 FGGWNLSLFS 347 (703)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCeEEEEe
Confidence 5799998843
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.7e-10 Score=100.52 Aligned_cols=101 Identities=16% Similarity=0.166 Sum_probs=77.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc--CCCC
Q 024096 7 IFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA--GLQD 84 (272)
Q Consensus 7 ~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~--g~~~ 84 (272)
+|-.+...++++..+.+...... .+.+|.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|+.+++.+ |+ +
T Consensus 67 l~~p~~~~~eQat~e~vA~~~a~-~l~~g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~ 143 (410)
T 3ll7_A 67 LYIPSRLSLEQSSGAVTSSYKSR-FIREGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEG-K 143 (410)
T ss_dssp CCCCCHHHHHHSCCHHHHHHGGG-GSCTTCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHSCTT-C
T ss_pred eecCCCCChhhcCHHHHHHHHHH-hcCCCCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhccCC-C
Confidence 33333445666655555433222 1235899999999999999999986 789999999999999999999988 77 6
Q ss_pred CeEEEEcccCCC-CC--CCCccEEEEech
Q 024096 85 HIRFYLCDYRQL-PK--ANKYDRIISCGM 110 (272)
Q Consensus 85 ~i~~~~~d~~~~-~~--~~~fD~V~~~~~ 110 (272)
+++++++|+.+. +. +++||+|++...
T Consensus 144 ~i~~i~~Da~~~L~~~~~~~fDvV~lDPP 172 (410)
T 3ll7_A 144 DVNILTGDFKEYLPLIKTFHPDYIYVDPA 172 (410)
T ss_dssp EEEEEESCGGGSHHHHHHHCCSEEEECCE
T ss_pred cEEEEECcHHHhhhhccCCCceEEEECCC
Confidence 899999999885 32 358999999754
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-10 Score=96.58 Aligned_cols=90 Identities=13% Similarity=0.199 Sum_probs=71.9
Q ss_pred HHHHHHcCCCCC--CEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------C-CCCCeEEEEccc
Q 024096 24 SVLIEKARVSKG--QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA-------G-LQDHIRFYLCDY 93 (272)
Q Consensus 24 ~~l~~~l~~~~~--~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~-------g-~~~~i~~~~~d~ 93 (272)
+.+++.+.+.++ .+|||+|||+|..+..+++. +++|+++|+++.+.+.++++++.. + +.++++++++|.
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 566777777777 89999999999999999997 779999999999877777665432 1 224799999998
Q ss_pred CCC-C-CCCCccEEEEechhhcc
Q 024096 94 RQL-P-KANKYDRIISCGMIEHV 114 (272)
Q Consensus 94 ~~~-~-~~~~fD~V~~~~~~~~~ 114 (272)
.++ + ..++||+|++..++.+-
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~~~ 177 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFPHK 177 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCCCC
T ss_pred HHHHHhCcccCCEEEEcCCCCCc
Confidence 774 3 23579999999888663
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.5e-10 Score=102.06 Aligned_cols=117 Identities=15% Similarity=0.062 Sum_probs=89.2
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-c---------------CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-T---------------GCKYTGITLSEEQLKYAEIKVREAGLQDHIR 87 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~---------------~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~ 87 (272)
+.|++.+...++ +|||.+||+|++...+++. . ...++|+|+++.++..|+.++...|+..++.
T Consensus 235 ~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~ 313 (544)
T 3khk_A 235 TLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFG 313 (544)
T ss_dssp HHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCC
T ss_pred HHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccc
Confidence 445556665555 9999999999998877543 1 4689999999999999999999888865665
Q ss_pred EEEcccCCCC--CCCCccEEEEechhhcc-------------------------Chh--hHHHHHHHHHhcCccCcEEEE
Q 024096 88 FYLCDYRQLP--KANKYDRIISCGMIEHV-------------------------GHD--YMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 88 ~~~~d~~~~~--~~~~fD~V~~~~~~~~~-------------------------~~~--~~~~~l~~~~~~LkpgG~l~i 138 (272)
+.++|....+ ...+||+|+++..+..- +.. .--.++..+.+.|+|||++++
T Consensus 314 i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ai 393 (544)
T 3khk_A 314 KKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMAL 393 (544)
T ss_dssp SSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEE
T ss_pred eeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEE
Confidence 6889976655 45789999999876531 110 012589999999999999887
Q ss_pred Eee
Q 024096 139 QFI 141 (272)
Q Consensus 139 ~~~ 141 (272)
..+
T Consensus 394 VlP 396 (544)
T 3khk_A 394 LLA 396 (544)
T ss_dssp EEE
T ss_pred Eec
Confidence 543
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-09 Score=99.76 Aligned_cols=102 Identities=15% Similarity=0.149 Sum_probs=78.0
Q ss_pred CCEEEEECCCchHHHHHHHHc---c-----------CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC--
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ---T-----------GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK-- 98 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~---~-----------~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~-- 98 (272)
+..|||+|||+|.++...++. . ..+|++||.++..+...+.... +++.++|+++.+|++++..
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 468999999999997543221 1 2399999999977766555544 7888899999999999873
Q ss_pred ----CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 99 ----ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 99 ----~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
.++.|+|+|..+-.....+-..+.+..+.+.|||||.++
T Consensus 489 ~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 689999999766443333445678888899999999866
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.4e-09 Score=91.42 Aligned_cols=121 Identities=13% Similarity=0.114 Sum_probs=94.9
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC-----CCeEEEEcccCCCC--
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQ-----DHIRFYLCDYRQLP-- 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~-----~~i~~~~~d~~~~~-- 97 (272)
....++..+|.+|||+++|.|+-+.++++. .+..++++|+++..+...+++++..+.. .++.+...|...++
T Consensus 140 ~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~ 219 (359)
T 4fzv_A 140 PVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL 219 (359)
T ss_dssp HHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH
T ss_pred HHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh
Confidence 445568899999999999999999999987 4458999999999999999999877642 47899999988876
Q ss_pred CCCCccEEEEechhhc---------------cCh-------hhHHHHHHHHHhcCccCcEEEEEeecCCCC
Q 024096 98 KANKYDRIISCGMIEH---------------VGH-------DYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~---------------~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272)
..+.||.|++...... ... .-...++++..+.|||||+|+.++.+....
T Consensus 220 ~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ 290 (359)
T 4fzv_A 220 EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHL 290 (359)
T ss_dssp STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTT
T ss_pred ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchh
Confidence 4578999998543111 000 112468889999999999999988775443
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-09 Score=90.86 Aligned_cols=85 Identities=16% Similarity=0.130 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCE--EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCK--YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~--v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
..++.+++.+.+.++.+|||||||+|.++. +.+ +.+ |+++|+++.+++.++++.... ++++++++|+.+++
T Consensus 8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~ 81 (252)
T 1qyr_A 8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCH
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCH
Confidence 456788888888899999999999999999 654 356 999999999999999876432 47999999999887
Q ss_pred CC-----CCccEEEEechh
Q 024096 98 KA-----NKYDRIISCGMI 111 (272)
Q Consensus 98 ~~-----~~fD~V~~~~~~ 111 (272)
++ +..|.|+++...
T Consensus 82 ~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 82 GELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp HHHHHHHTSCEEEEEECCT
T ss_pred HHhhcccCCceEEEECCCC
Confidence 21 234677776553
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.7e-09 Score=87.48 Aligned_cols=110 Identities=18% Similarity=0.250 Sum_probs=86.0
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc--C--CCCCeEEEEcccCCCC--CCCCccEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA--G--LQDHIRFYLCDYRQLP--KANKYDRI 105 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~--g--~~~~i~~~~~d~~~~~--~~~~fD~V 105 (272)
....+||-||.|.|+.++.+.+. +..+|+.+|+++..++.+++.+... + -.++++++.+|....- ..++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 45679999999999999999988 4579999999999999999987531 2 1368999999988866 55789999
Q ss_pred EEechhhccChh--hHHHHHHHHHhcCccCcEEEEEeec
Q 024096 106 ISCGMIEHVGHD--YMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 106 ~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
++...-..-+.. .-.++++.+.+.|+|||.++.+..+
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence 986432111101 1257999999999999999986544
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.90 E-value=9.8e-09 Score=94.11 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=86.9
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc----cCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCC--C--CCCCc
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ----TGCKYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYRQL--P--KANKY 102 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~----~~~~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~--~--~~~~f 102 (272)
..++.+|+|.+||+|++...+++. ....++|+|+++.+...|+.++...|+. +++.+.++|.... + ...+|
T Consensus 219 ~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~f 298 (542)
T 3lkd_A 219 DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNF 298 (542)
T ss_dssp TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCB
T ss_pred CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccc
Confidence 357789999999999998888776 2578999999999999999999888875 4789999998766 4 45789
Q ss_pred cEEEEechhhccC-------------------h--hhHHHHHHHHHhcCc-cCcEEEEEee
Q 024096 103 DRIISCGMIEHVG-------------------H--DYMEEFFGCCESLLA-THGLLVLQFI 141 (272)
Q Consensus 103 D~V~~~~~~~~~~-------------------~--~~~~~~l~~~~~~Lk-pgG~l~i~~~ 141 (272)
|+|+++..+..-. . +.--.++..+.+.|+ |||++.+..+
T Consensus 299 D~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 299 DGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp SEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred cEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 9999997653210 0 001248999999999 9999987543
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.89 E-value=9.3e-09 Score=89.20 Aligned_cols=157 Identities=15% Similarity=0.204 Sum_probs=98.8
Q ss_pred CCEEEEECCCchHHHHHHHHc-----------------cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE---cccC
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ-----------------TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL---CDYR 94 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~-----------------~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~---~d~~ 94 (272)
..+|+|+||++|.++..+.+. +..+|+..|+..+.....-+.+.......+..|+. +.+-
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 468999999999877654332 34678899987766655544432210001223444 4443
Q ss_pred CCC-CCCCccEEEEechhhccCh-------------------------------hhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 95 QLP-KANKYDRIISCGMIEHVGH-------------------------------DYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 95 ~~~-~~~~fD~V~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
.-. +++++|+|+|+.++||+++ +|+..+|+..++.|+|||++++....
T Consensus 132 ~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~g 211 (359)
T 1m6e_X 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEec
Confidence 333 7899999999999999743 24556799999999999999998877
Q ss_pred CCCCcc---------ccccCcc------hh-----hhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEec
Q 024096 143 APDQCY---------DEYRLSP------GF-----IKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENI 192 (272)
Q Consensus 143 ~~~~~~---------~~~~~~~------~~-----~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~ 192 (272)
.+.... +.+.... +. +.....| .+.|+.+++...+.++.+|.+..++.+
T Consensus 212 r~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P-~y~ps~~E~~~~ie~~G~F~i~~~e~~ 280 (359)
T 1m6e_X 212 RRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIP-QYTPSPTEVEAEILKEGSFLIDHIEAS 280 (359)
T ss_dssp CSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCC-CBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred CCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCC-ccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence 655321 0010000 00 1111222 356888998877776667788776554
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.9e-09 Score=88.08 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=77.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-K 98 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~ 98 (272)
.++..+.++..++++.+|||+|||+|+++..+++.. ...+.|+|++..+....... ...+ .++.....++.... .
T Consensus 61 ~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g--~~ii~~~~~~dv~~l~ 137 (277)
T 3evf_A 61 AKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLG--WNIITFKDKTDIHRLE 137 (277)
T ss_dssp HHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTT--GGGEEEECSCCTTTSC
T ss_pred HHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCC--CCeEEEeccceehhcC
Confidence 456677777667899999999999999999988763 34788888874321000000 0001 14455666654444 4
Q ss_pred CCCccEEEEechhhccChhhH-----HHHHHHHHhcCccC-cEEEEEeec
Q 024096 99 ANKYDRIISCGMIEHVGHDYM-----EEFFGCCESLLATH-GLLVLQFIS 142 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~-----~~~l~~~~~~Lkpg-G~l~i~~~~ 142 (272)
+++||+|+|..+.+ .+.... ..+++.+.++|+|| |.+++..+.
T Consensus 138 ~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 138 PVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 57899999986554 332221 23568889999999 999985444
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.8e-09 Score=85.69 Aligned_cols=134 Identities=14% Similarity=0.135 Sum_probs=82.2
Q ss_pred cccccCCCCCCHHHHHHHHHH--HHHHHcC--CCCCCEEEEECCCchHHHHHHHHc--------c-----CCEEEEEcCC
Q 024096 4 SCAIFKSEHEDLEVGQMRKVS--VLIEKAR--VSKGQEVLDIGCGWGTLAIEIVKQ--------T-----GCKYTGITLS 66 (272)
Q Consensus 4 ~~~~~~~~~~~l~~aq~~~~~--~l~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~--------~-----~~~v~gvd~s 66 (272)
.-.|++.. ..+.++....+. .+-.+.. ..++.+|||+|+|+|..+..+++. + ..+++++|..
T Consensus 27 ~e~y~s~~-~~l~E~~~vF~~~~~lp~r~~~~~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~ 105 (257)
T 2qy6_A 27 DDVYFSND-NGLEETRYVFLGGNQLEARFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKF 105 (257)
T ss_dssp TEESSCTT-THHHHHHHHHHHHTTHHHHGGGCSSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESS
T ss_pred CccccCCC-CHHHHHHHHHHhccchHHHHHhcCCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECC
Confidence 33455443 346666555432 1222222 345679999999999988776542 2 2589999987
Q ss_pred H---HH-----------HHHHHHHHHHc----------CCC---CCeEEEEcccCC-CC-CC----CCccEEEEechhh-
Q 024096 67 E---EQ-----------LKYAEIKVREA----------GLQ---DHIRFYLCDYRQ-LP-KA----NKYDRIISCGMIE- 112 (272)
Q Consensus 67 ~---~~-----------~~~a~~~~~~~----------g~~---~~i~~~~~d~~~-~~-~~----~~fD~V~~~~~~~- 112 (272)
| +. .+.+++.+... .+. .+++++.+|+.+ ++ .+ ..||+|+....-.
T Consensus 106 p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~ 185 (257)
T 2qy6_A 106 PLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPA 185 (257)
T ss_dssp CCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTT
T ss_pred cCCHHHHHHHHhcChhHHHHHHHHHHhccccccchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcc
Confidence 6 33 33566665431 011 367899999877 33 22 2799999864211
Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
..++--...+++.+.+.|+|||+++.
T Consensus 186 ~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 186 KNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp TCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred cChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 11100126799999999999999874
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.69 E-value=5e-08 Score=81.95 Aligned_cols=123 Identities=10% Similarity=0.098 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc------cCCEEEEEcCCHH-------------------
Q 024096 15 LEVGQMRKVSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ------TGCKYTGITLSEE------------------- 68 (272)
Q Consensus 15 l~~aq~~~~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~------~~~~v~gvd~s~~------------------- 68 (272)
+...+...+..+++.+. ......|||+|+..|..+..+++. ++.+++++|..+.
T Consensus 86 v~~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~ 165 (282)
T 2wk1_A 86 IGIKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHR 165 (282)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGG
T ss_pred cCHHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCccccccccccccccccc
Confidence 33455555666666653 234459999999999999988764 2678999996421
Q ss_pred -------HHHHHHHHHHHcCCC-CCeEEEEcccCC-CC--CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 69 -------QLKYAEIKVREAGLQ-DHIRFYLCDYRQ-LP--KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 69 -------~~~~a~~~~~~~g~~-~~i~~~~~d~~~-~~--~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
..+.+++++++.|+. ++++++.+|+.+ ++ ++++||+|+...-.. +.....++.+...|+|||.++
T Consensus 166 ~~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv 241 (282)
T 2wk1_A 166 RNSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVI 241 (282)
T ss_dssp GHHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEE
Confidence 367789999999984 899999999865 34 346899999875321 334688999999999999999
Q ss_pred EEee
Q 024096 138 LQFI 141 (272)
Q Consensus 138 i~~~ 141 (272)
+.++
T Consensus 242 ~DD~ 245 (282)
T 2wk1_A 242 VDDY 245 (282)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 8654
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.5e-07 Score=88.62 Aligned_cols=110 Identities=10% Similarity=0.012 Sum_probs=78.4
Q ss_pred CCCCEEEEECCCchHHHHHHHHcc----CCEEEEEcCCHHHHHHH--HHHHHHcCCC---CCeEEEEcccCCCC--CCCC
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQT----GCKYTGITLSEEQLKYA--EIKVREAGLQ---DHIRFYLCDYRQLP--KANK 101 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~----~~~v~gvd~s~~~~~~a--~~~~~~~g~~---~~i~~~~~d~~~~~--~~~~ 101 (272)
.++.+|||.|||+|.++..+++.. ..+++|+|+++.+++.| +.++..+++. ....+...|+.... ...+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 467899999999999999998863 25799999999999999 5444332221 12356666666643 4578
Q ss_pred ccEEEEechhhc-cCh-h-------------------------hHHHHHHHHHhcCccCcEEEEEeec
Q 024096 102 YDRIISCGMIEH-VGH-D-------------------------YMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 102 fD~V~~~~~~~~-~~~-~-------------------------~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
||+|+++..+.. ... . ....++..+.+.|+|||++++..+.
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 999999987722 110 0 1234788899999999999985443
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-08 Score=84.41 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc--ccCCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC--DYRQLP 97 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~--d~~~~~ 97 (272)
.++..+.++..+.++.+|||+|||+|+++..+++. ....++|+|++..+...+... ...+ .++..... |+..+
T Consensus 77 fKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g--~~ii~~~~~~dv~~l- 152 (282)
T 3gcz_A 77 AKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG--WNLIRFKDKTDVFNM- 152 (282)
T ss_dssp HHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT--GGGEEEECSCCGGGS-
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC--CceEEeeCCcchhhc-
Confidence 45667777777889999999999999999998876 345789999976432111100 0001 13333332 33333
Q ss_pred CCCCccEEEEechhhccChhhH-----HHHHHHHHhcCccC--cEEEEEeec
Q 024096 98 KANKYDRIISCGMIEHVGHDYM-----EEFFGCCESLLATH--GLLVLQFIS 142 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~-----~~~l~~~~~~Lkpg--G~l~i~~~~ 142 (272)
+..++|+|+|..+.. .+.... ..+++-+.++|+|| |.+++-.+.
T Consensus 153 ~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 153 EVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred CCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 357899999987655 333221 23577778999999 999986554
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.61 E-value=8.3e-08 Score=79.88 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=71.2
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----- 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----- 97 (272)
++.+++.+.+.++..+||.+||.|+.+..++++ +.+|+|+|.++.+++.+++ +.. +++.++++++.+++
T Consensus 11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~ 84 (285)
T 1wg8_A 11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAA 84 (285)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHH
T ss_pred HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHH
Confidence 467888888999999999999999999999998 7899999999999999988 533 48999999999875
Q ss_pred -CCCCccEEEEechh
Q 024096 98 -KANKYDRIISCGMI 111 (272)
Q Consensus 98 -~~~~fD~V~~~~~~ 111 (272)
..+++|.|+....+
T Consensus 85 ~g~~~vDgIL~DLGv 99 (285)
T 1wg8_A 85 LGVERVDGILADLGV 99 (285)
T ss_dssp TTCSCEEEEEEECSC
T ss_pred cCCCCcCEEEeCCcc
Confidence 22579999986543
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.3e-07 Score=68.44 Aligned_cols=98 Identities=12% Similarity=0.034 Sum_probs=68.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCch-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWG-TLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK 98 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G-~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 98 (272)
....+.+.+.+. ++.+|||||||.| ..+..|++..+..|+++|+++..++ +++.|+.+...
T Consensus 23 e~LaeYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~dDiF~P~~ 84 (153)
T 2k4m_A 23 NDLAVYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRDDITSPRM 84 (153)
T ss_dssp HHHHHHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECCCSSSCCH
T ss_pred HHHHHHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEccCCCCcc
Confidence 334455666653 5679999999999 6999999855899999999885444 88889877442
Q ss_pred C--CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 99 A--NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 99 ~--~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+ +.||+|.+...- .++...+-++++ +-|.-++|....
T Consensus 85 ~~Y~~~DLIYsirPP-----~El~~~i~~lA~--~v~adliI~pL~ 123 (153)
T 2k4m_A 85 EIYRGAALIYSIRPP-----AEIHSSLMRVAD--AVGARLIIKPLT 123 (153)
T ss_dssp HHHTTEEEEEEESCC-----TTTHHHHHHHHH--HHTCEEEEECBT
T ss_pred cccCCcCEEEEcCCC-----HHHHHHHHHHHH--HcCCCEEEEcCC
Confidence 2 589999886532 233445555554 456777775443
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.3e-07 Score=80.60 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=80.9
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-----CC--CCCeEEEEcccCCCC-----CCC
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA-----GL--QDHIRFYLCDYRQLP-----KAN 100 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~-----g~--~~~i~~~~~d~~~~~-----~~~ 100 (272)
.++.+||-||.|.|..++.+.+.+..+|+.+|+++..++.+++.+... .. .++++++.+|..+.- ..+
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 456899999999999999999876679999999999999999875321 11 135899999976542 346
Q ss_pred CccEEEEechhh-------ccCh-hhHHHHHHHHHhcCccCcEEEEEe
Q 024096 101 KYDRIISCGMIE-------HVGH-DYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 101 ~fD~V~~~~~~~-------~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+||+|+....-. .... .....+++.+.+.|+|||.++.+.
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 899999863211 1111 123578999999999999998754
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-06 Score=79.03 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=87.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--------------cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--------------TGCKYTGITLSEEQLKYAEIKVREAGLQDHIR 87 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--------------~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~ 87 (272)
.++.|++.+...++.+|+|.+||+|++...+.+. ....++|+|+++.+...|+.++-..|.. ...
T Consensus 205 Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-~~~ 283 (530)
T 3ufb_A 205 VVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-YPR 283 (530)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-CCE
T ss_pred HHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-ccc
Confidence 3456677778888999999999999998776543 1246999999999999999988887774 457
Q ss_pred EEEcccCCCC-----CCCCccEEEEechhhccCh--------------hhHHHHHHHHHhcCc-------cCcEEEEEee
Q 024096 88 FYLCDYRQLP-----KANKYDRIISCGMIEHVGH--------------DYMEEFFGCCESLLA-------THGLLVLQFI 141 (272)
Q Consensus 88 ~~~~d~~~~~-----~~~~fD~V~~~~~~~~~~~--------------~~~~~~l~~~~~~Lk-------pgG~l~i~~~ 141 (272)
+.++|....+ ...+||+|+++..+.--.. +.-..++..+.+.|| |||++.+..+
T Consensus 284 I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 284 IDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp EECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred ccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 8888876654 2357999999988742110 111246777777776 7999888544
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-06 Score=72.91 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=81.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-ccCCCC
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-DYRQLP 97 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~~~ 97 (272)
..++..+.++..+.++.+|||+||++|+++.+++...++ +|+|+|+...-.+.= ......++ +.+.+..+ |+..++
T Consensus 80 ~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w-~lV~~~~~~Dv~~l~ 157 (321)
T 3lkz_A 80 TAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGW-NIVTMKSGVDVFYRP 157 (321)
T ss_dssp HHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTG-GGEEEECSCCTTSSC
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCC-cceEEEeccCHhhCC
Confidence 456677888878889999999999999999988887454 699999965411000 00001122 24788888 887777
Q ss_pred CCCCccEEEEechhhccChhhH-----HHHHHHHHhcCccC-cEEEEEeec
Q 024096 98 KANKYDRIISCGMIEHVGHDYM-----EEFFGCCESLLATH-GLLVLQFIS 142 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~-----~~~l~~~~~~Lkpg-G~l~i~~~~ 142 (272)
+ .++|+|+|.-. +--+.... ..+|+-+..+|++| |-+++-.+.
T Consensus 158 ~-~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~ 206 (321)
T 3lkz_A 158 S-ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLC 206 (321)
T ss_dssp C-CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred C-CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcC
Confidence 5 67999999755 44433221 22666667889999 888885444
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.5e-06 Score=67.74 Aligned_cols=119 Identities=16% Similarity=0.201 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-ccCCC
Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-DYRQL 96 (272)
Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~~ 96 (272)
...++..+.++..+.++.+|||+||++|+++.+++...+ .+|+|+|+-..-.+.= ......|+ +.++|..+ |+..+
T Consensus 63 a~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gw-n~v~fk~gvDv~~~ 140 (267)
T 3p8z_A 63 GSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGW-NIVKLMSGKDVFYL 140 (267)
T ss_dssp HHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTT-TSEEEECSCCGGGC
T ss_pred HHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCc-CceEEEeccceeec
Confidence 345677888888889999999999999999998888744 4799999965422100 00112244 47999999 98777
Q ss_pred CCCCCccEEEEechhhccChhh--H---HHHHHHHHhcCccCcEEEEEeec
Q 024096 97 PKANKYDRIISCGMIEHVGHDY--M---EEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 97 ~~~~~fD~V~~~~~~~~~~~~~--~---~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
++ .++|+|+|.-.= .-+... . ..+|+-+.++|++ |-+++-.+.
T Consensus 141 ~~-~~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~ 188 (267)
T 3p8z_A 141 PP-EKCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLN 188 (267)
T ss_dssp CC-CCCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESC
T ss_pred CC-ccccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEcc
Confidence 65 679999996432 222111 1 2367777899998 788775444
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-06 Score=75.63 Aligned_cols=71 Identities=10% Similarity=0.117 Sum_probs=56.2
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEech
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGM 110 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~ 110 (272)
+.+|++|||+||.+|+++..++++ +.+|++||+.+- ... +.. .++|.++++|..... ...++|+|+|..+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r-g~~V~aVD~~~l-~~~----l~~---~~~V~~~~~d~~~~~~~~~~~D~vvsDm~ 279 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR-NMWVYSVDNGPM-AQS----LMD---TGQVTWLREDGFKFRPTRSNISWMVCDMV 279 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT-TCEEEEECSSCC-CHH----HHT---TTCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC-CCEEEEEEhhhc-Chh----hcc---CCCeEEEeCccccccCCCCCcCEEEEcCC
Confidence 578999999999999999999997 789999998641 111 111 148999999988877 4568999999654
Q ss_pred h
Q 024096 111 I 111 (272)
Q Consensus 111 ~ 111 (272)
.
T Consensus 280 ~ 280 (375)
T 4auk_A 280 E 280 (375)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=4.9e-06 Score=67.90 Aligned_cols=114 Identities=16% Similarity=0.171 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCC---CC---eEEEEc
Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQ---DH---IRFYLC 91 (272)
Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~---~~---i~~~~~ 91 (272)
...++.+|-++.-++|+.+|||+||+.|+++..+++..+. .|.|.++.... . ...+. .. +.+.++
T Consensus 58 AayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-------~~P~~~~~~Gv~~i~~~~G 129 (269)
T 2px2_A 58 GTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-------EEPMLMQSYGWNIVTMKSG 129 (269)
T ss_dssp HHHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-------CCCCCCCSTTGGGEEEECS
T ss_pred HHHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-------cCCCcccCCCceEEEeecc
Confidence 3445677777766789999999999999999999886222 33444443220 0 00111 12 355557
Q ss_pred -ccCCCCCCCCccEEEEechhhccChhhHH-----HHHHHHHhcCccCc-EEEEEeec
Q 024096 92 -DYRQLPKANKYDRIISCGMIEHVGHDYME-----EFFGCCESLLATHG-LLVLQFIS 142 (272)
Q Consensus 92 -d~~~~~~~~~fD~V~~~~~~~~~~~~~~~-----~~l~~~~~~LkpgG-~l~i~~~~ 142 (272)
|+.+++ +.++|+|+|.-.-. .+....+ ..++-+.++|+||| .+++-.+.
T Consensus 130 ~Df~~~~-~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 130 VDVFYKP-SEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp CCGGGSC-CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCccCCC-CCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 988754 35799999975332 3222111 25666779999999 88886554
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=9.6e-07 Score=73.64 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=71.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc--ccCCCCC
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC--DYRQLPK 98 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~--d~~~~~~ 98 (272)
++..+.++--+.++.+|||+||++|+++..+++. .-..|+|+|+.......... ....+ .++..... |+..+ .
T Consensus 69 KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~--~~iv~~~~~~di~~l-~ 144 (300)
T 3eld_A 69 KIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLG--WNIVKFKDKSNVFTM-P 144 (300)
T ss_dssp HHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTT--GGGEEEECSCCTTTS-C
T ss_pred HHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccC--CceEEeecCceeeec-C
Confidence 4555666633578899999999999999999986 33478899986432100000 00001 12222222 33332 3
Q ss_pred CCCccEEEEechhhccChhhH-----HHHHHHHHhcCccC-cEEEEEeec
Q 024096 99 ANKYDRIISCGMIEHVGHDYM-----EEFFGCCESLLATH-GLLVLQFIS 142 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~-----~~~l~~~~~~Lkpg-G~l~i~~~~ 142 (272)
.+.+|+|+|..+-. .+..+. ..+++-+.++|+|| |.+++-.+.
T Consensus 145 ~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 145 TEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred CCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 47899999976544 433221 24577778999999 999986554
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.20 E-value=6.8e-06 Score=69.72 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272)
..+..+++... .+++.|||++||+|..+..+++. +.+++|+|+++.+++.|++++...
T Consensus 223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~-g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARW-GRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 45567777766 68899999999999999998875 889999999999999999998765
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.14 E-value=8.5e-05 Score=63.90 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=106.7
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--------------------CCCCeEEEEc
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAG--------------------LQDHIRFYLC 91 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g--------------------~~~~i~~~~~ 91 (272)
.+...|+.+|||.......+... ++.+++-+|. |..++.-++.+...+ .+++.+++.+
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 45679999999999999998875 5678888887 888888888877652 1357899999
Q ss_pred ccCCCC----------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCC---CCccccccCcchhh
Q 024096 92 DYRQLP----------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP---DQCYDEYRLSPGFI 158 (272)
Q Consensus 92 d~~~~~----------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~---~~~~~~~~~~~~~~ 158 (272)
|+.+.. ..+...++++..++.+++.+....+++.+.+.. |+|.+++-+...+ ...+... ....+
T Consensus 175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~--m~~~l 251 (334)
T 1rjd_A 175 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAI--MQSNL 251 (334)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHH--HHHHH
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHH--HHHHh
Confidence 988732 124678999999999999998999999999877 7777766566555 2222110 00111
Q ss_pred hh---cccCC-CCCCCHHHHHHHhhcCCCcEEEEEEecC
Q 024096 159 KE---YIFPG-GCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 159 ~~---~~~p~-~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272)
.. ...++ ..+++.++..+. +.++||. ...++.
T Consensus 252 ~~~rg~~l~~~~~y~s~~~~~~r-l~~~Gf~--~a~d~~ 287 (334)
T 1rjd_A 252 KESRNLEMPTLMTYNSKEKYASR-WSAAPNV--IVNDMW 287 (334)
T ss_dssp HHHHCCCCTTTTTTCSHHHHHGG-GTTSSEE--EEEEHH
T ss_pred hcccCCcccccccCCCHHHHHHH-HHHCCCC--cccCHH
Confidence 11 11222 245788876644 5579997 445544
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.95 E-value=1e-05 Score=68.98 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=70.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--- 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--- 97 (272)
++.+++.+.+.+|..++|..||.|+.+..+++. +..+|+|+|.++.+++.++ ++ ..+++.++++++.++.
T Consensus 46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L 120 (347)
T 3tka_A 46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYV 120 (347)
T ss_dssp THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHH
T ss_pred HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHH
Confidence 477889999999999999999999999999987 4679999999999999884 33 1368999999998875
Q ss_pred C----CCCccEEEEechhh
Q 024096 98 K----ANKYDRIISCGMIE 112 (272)
Q Consensus 98 ~----~~~fD~V~~~~~~~ 112 (272)
. .+++|.|+....+.
T Consensus 121 ~~~g~~~~vDgILfDLGVS 139 (347)
T 3tka_A 121 AERDLIGKIDGILLDLGVS 139 (347)
T ss_dssp HHTTCTTCEEEEEEECSCC
T ss_pred HhcCCCCcccEEEECCccC
Confidence 1 13699999876543
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.83 E-value=6.4e-05 Score=65.01 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCCC------CCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 024096 20 MRKVSVLIEKARVSK------GQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD 92 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~------~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d 92 (272)
.+.++.+++.+++.+ +..|||||.|.|.++..|++. ...+++++|+++..+...++.. . .++++++++|
T Consensus 38 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D 113 (353)
T 1i4w_A 38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRD 113 (353)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSC
T ss_pred HHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECC
Confidence 345677888887653 589999999999999999986 3569999999999999888775 2 2589999999
Q ss_pred cCCC
Q 024096 93 YRQL 96 (272)
Q Consensus 93 ~~~~ 96 (272)
+.++
T Consensus 114 ~l~~ 117 (353)
T 1i4w_A 114 PYDW 117 (353)
T ss_dssp TTCH
T ss_pred ccch
Confidence 9654
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00055 Score=58.22 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=83.2
Q ss_pred CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--CCCeEEEEcccCCCC----------CCCCc
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL--QDHIRFYLCDYRQLP----------KANKY 102 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~~~----------~~~~f 102 (272)
...|+++|||.=.....+....+.+++-+| .|..++..++.+...+. .++.+++.+|+.+ . ..+.-
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSAR 180 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSC
T ss_pred CCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCC
Confidence 357999999976665555432247899999 59999999999976542 4578999999886 3 01345
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
-++++..+++++++++...+++.+.+.+.||+.+++....
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~ 220 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 220 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 6888889999999988899999999999999999886554
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.77 E-value=6.7e-05 Score=62.25 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAG 81 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g 81 (272)
..++.+++... .+++.|||..||+|..+....+. +.+++|+|+++..++.++++++.++
T Consensus 200 ~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~-gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKL-GRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 34566666654 68899999999999999988775 8899999999999999999987654
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.60 E-value=9.4e-05 Score=61.45 Aligned_cols=109 Identities=21% Similarity=0.199 Sum_probs=70.7
Q ss_pred HHHHHHHHc-----CCCCCCEEEEECC------CchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEE
Q 024096 22 KVSVLIEKA-----RVSKGQEVLDIGC------GWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRF 88 (272)
Q Consensus 22 ~~~~l~~~l-----~~~~~~~vLDiG~------G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~ 88 (272)
++..+++-+ ..+.+++|||+|+ -+|+. .+.+. + ++.++++|+.+-.. ..-.+
T Consensus 92 kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s-------------da~~~ 156 (344)
T 3r24_A 92 KYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS-------------DADST 156 (344)
T ss_dssp HHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC-------------SSSEE
T ss_pred HHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc-------------CCCeE
Confidence 344555544 3568899999996 67773 33333 4 36999999976321 11255
Q ss_pred EEcccCCCCCCCCccEEEEechhhccCh---------hhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 89 YLCDYRQLPKANKYDRIISCGMIEHVGH---------DYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 89 ~~~d~~~~~~~~~fD~V~~~~~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
+++|..+.....+||+|+|.-.-...+. .-.+.+++-+.+.|+|||.+++-.+-.+.
T Consensus 157 IqGD~~~~~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg 222 (344)
T 3r24_A 157 LIGDCATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW 222 (344)
T ss_dssp EESCGGGEEESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred EEccccccccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence 9999876665688999999743221111 12345666678899999999986555443
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=2.8e-05 Score=82.83 Aligned_cols=104 Identities=20% Similarity=0.214 Sum_probs=56.0
Q ss_pred CCCCEEEEECCCchHHHHHHHHcc------CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-CCCCccE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQT------GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P-KANKYDR 104 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~------~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~-~~~~fD~ 104 (272)
.+..+|||||.|+|..+..+.+.. ..+++..|+|+...+.++++++.. .+....-|..+. + ....||+
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----di~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----HVTQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----TEEEECCCSSCCCC-----CCE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----ccccccccccccccCCCCceeE
Confidence 356899999999998766655431 237899999988887787776543 233322243332 1 2467999
Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
|++.+++|.. ++....+++++++|||||++++.+..
T Consensus 1315 via~~vl~~t--~~~~~~l~~~~~lL~p~G~l~~~e~~ 1350 (2512)
T 2vz8_A 1315 LVCNCALATL--GDPAVAVGNMAATLKEGGFLLLHTLL 1350 (2512)
T ss_dssp EEEECC----------------------CCEEEEEEC-
T ss_pred EEEccccccc--ccHHHHHHHHHHhcCCCcEEEEEecc
Confidence 9999999765 45678999999999999999986543
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00073 Score=57.00 Aligned_cols=156 Identities=17% Similarity=0.144 Sum_probs=89.3
Q ss_pred ccccCCCCCCHHHHHHHHHH--HHHHHcCCCCCCEEEEECCCchHHHHHHH----Hc-cCC--EEEEEcCCH--------
Q 024096 5 CAIFKSEHEDLEVGQMRKVS--VLIEKARVSKGQEVLDIGCGWGTLAIEIV----KQ-TGC--KYTGITLSE-------- 67 (272)
Q Consensus 5 ~~~~~~~~~~l~~aq~~~~~--~l~~~l~~~~~~~vLDiG~G~G~~~~~l~----~~-~~~--~v~gvd~s~-------- 67 (272)
-.||+..+..+.+++.-.+. .+.++..-.+.-+|||+|-|+|.+..... +. +.. +++.+|..+
T Consensus 65 e~YhS~~~GAl~Es~hVFi~~~~L~~r~~~~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~ 144 (308)
T 3vyw_A 65 EPYHSQTAGAIRESLYKFVRPSRILEKAKERKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILP 144 (308)
T ss_dssp EESSCTTTCHHHHHHHHTHHHHTHHHHHHHCSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCC
T ss_pred CccCCCCCcHHHHHHHHHhccCCchHHhcCCCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhch
Confidence 34555455568888877664 23334333445689999999998654322 22 344 556776421
Q ss_pred H-HHHHHHHHHHHcC-C-CC--CeEEEEcccCCC-C--CCCCccEEEEechhhccChhhH----HHHHHHHHhcCccCcE
Q 024096 68 E-QLKYAEIKVREAG-L-QD--HIRFYLCDYRQL-P--KANKYDRIISCGMIEHVGHDYM----EEFFGCCESLLATHGL 135 (272)
Q Consensus 68 ~-~~~~a~~~~~~~g-~-~~--~i~~~~~d~~~~-~--~~~~fD~V~~~~~~~~~~~~~~----~~~l~~~~~~LkpgG~ 135 (272)
. ..+.......... . .. .+.+..+|+.+. + ....+|+|+...-- |.+++ ..+++.+++.++|||.
T Consensus 145 ~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~~l~~l~~~~~Da~flDgFs---P~kNPeLWs~e~f~~l~~~~~pgg~ 221 (308)
T 3vyw_A 145 EPYREIHEFLLERVPEYEGERLSLKVLLGDARKRIKEVENFKADAVFHDAFS---PYKNPELWTLDFLSLIKERIDEKGY 221 (308)
T ss_dssp TTSHHHHHHHHHHCSEEECSSEEEEEEESCHHHHGGGCCSCCEEEEEECCSC---TTTSGGGGSHHHHHHHHTTEEEEEE
T ss_pred HhHHHHHHHHHHhCccccCCcEEEEEEechHHHHHhhhcccceeEEEeCCCC---cccCcccCCHHHHHHHHHHhCCCcE
Confidence 1 1122222222211 0 12 346788887653 3 23479999986521 11222 5899999999999998
Q ss_pred EEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecC
Q 024096 136 LVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272)
Q Consensus 136 l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272)
++ +++ ... .++..++++||.|....-.+
T Consensus 222 la--TYt---------------------------aag-~VRR~L~~aGF~V~k~~G~g 249 (308)
T 3vyw_A 222 WV--SYS---------------------------SSL-SVRKSLLTLGFKVGSSREIG 249 (308)
T ss_dssp EE--ESC---------------------------CCH-HHHHHHHHTTCEEEEEECC-
T ss_pred EE--EEe---------------------------CcH-HHHHHHHHCCCEEEecCCCC
Confidence 86 222 122 23344456999998876654
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0011 Score=57.59 Aligned_cols=100 Identities=16% Similarity=0.200 Sum_probs=69.9
Q ss_pred HHHHHcCCCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----C-
Q 024096 25 VLIEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL----P- 97 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~- 97 (272)
.+.+...++++++||-+|+|. |..+..+++..++ +|+++|.++...+.+++. |.. .++..+-.+. .
T Consensus 181 al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~ 253 (371)
T 1f8f_A 181 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKE 253 (371)
T ss_dssp HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred HHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC---EEecCCccCHHHHHHH
Confidence 344666788999999999986 7888888887677 799999999988888654 431 2332221111 1
Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+.+|+|+-. .+. ...++...+.|+++|++++.
T Consensus 254 ~~~gg~D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 254 ITDGGVNFALES-----TGS---PEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp HTTSCEEEEEEC-----SCC---HHHHHHHHHTEEEEEEEEEC
T ss_pred hcCCCCcEEEEC-----CCC---HHHHHHHHHHHhcCCEEEEe
Confidence 12379999854 221 35677888999999999873
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.29 E-value=5.5e-05 Score=62.99 Aligned_cols=104 Identities=13% Similarity=0.024 Sum_probs=80.2
Q ss_pred CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-C----CCCCCccEEEEec
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-L----PKANKYDRIISCG 109 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-~----~~~~~fD~V~~~~ 109 (272)
+..+||+=+|+|.+++.+.+. +.+++.+|.++..++..+++++. .++++++..|... + ++..+||+|++..
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP 167 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP 167 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred CCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence 457999999999999998884 68999999999999999988764 3589999999644 2 2446799999998
Q ss_pred hhhccChhhHHHHHHHHHh--cCccCcEEEEEeecCC
Q 024096 110 MIEHVGHDYMEEFFGCCES--LLATHGLLVLQFISAP 144 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~~~~ 144 (272)
..+.- .+...+++.+.+ .+.|+|.+++.-+...
T Consensus 168 PYe~k--~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 168 SYERK--EEYKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp CCCST--THHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred CCCCC--cHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 87743 244555655543 4569999998655533
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0016 Score=57.21 Aligned_cols=105 Identities=16% Similarity=0.061 Sum_probs=70.3
Q ss_pred HHHcCCCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C------
Q 024096 27 IEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P------ 97 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~------ 97 (272)
++...+.+|++||-+|+|. |..+..+++..++ +|+++|.+++..+.+++. |. .++..+-.+. .
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga----~~i~~~~~~~~~~~~~~~ 249 (398)
T 2dph_A 178 CVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----GF----ETIDLRNSAPLRDQIDQI 249 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----TC----EEEETTSSSCHHHHHHHH
T ss_pred HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CC----cEEcCCCcchHHHHHHHH
Confidence 4667889999999999986 8888888887777 999999999888777542 42 2332222222 1
Q ss_pred -CCCCccEEEEechhhccC------hhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 -KANKYDRIISCGMIEHVG------HDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~------~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+-.-.-.... .......++.+.+.|+++|++++.
T Consensus 250 ~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 250 LGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp HSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred hCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 123699998653322100 000124678888999999998863
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.002 Score=55.48 Aligned_cols=97 Identities=26% Similarity=0.282 Sum_probs=69.5
Q ss_pred HHHHHcCCCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc
Q 024096 25 VLIEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272)
..+....+.+|++||-+|+|. |..+..+++..+++|++++.+++..+.+++ .|.. .++ .+...+. +.+|
T Consensus 167 ~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~v~-~~~~~~~--~~~D 236 (348)
T 3two_A 167 SPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGVK---HFY-TDPKQCK--EELD 236 (348)
T ss_dssp HHHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTCS---EEE-SSGGGCC--SCEE
T ss_pred HHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCCC---eec-CCHHHHh--cCCC
Confidence 345566889999999999985 788888888788899999999988887765 3432 223 3333332 3799
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|+-.- +.. ..++...+.|+|+|++++.
T Consensus 237 ~vid~~-----g~~---~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 237 FIISTI-----PTH---YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp EEEECC-----CSC---CCHHHHHTTEEEEEEEEEC
T ss_pred EEEECC-----CcH---HHHHHHHHHHhcCCEEEEE
Confidence 998642 211 2466677899999999874
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0025 Score=52.42 Aligned_cols=114 Identities=9% Similarity=0.045 Sum_probs=76.4
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--------cCCEEEEEc-----CCHH-------------------HHH
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--------TGCKYTGIT-----LSEE-------------------QLK 71 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--------~~~~v~gvd-----~s~~-------------------~~~ 71 (272)
..+.+++.--+| .|+|+|+-.|..+..+++. +..+++++| +.+. ..+
T Consensus 60 ~~l~~~i~~vpG-~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~ 138 (257)
T 3tos_A 60 DALYRQVLDVPG-VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPA 138 (257)
T ss_dssp HHHHHHTTTSCS-EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHH
T ss_pred HHHHHHhhCCCC-eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHH
Confidence 355555443455 8999999999988887652 347899999 3210 011
Q ss_pred HHHHHH------HHcCC-CCCeEEEEcccCCCC-------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 72 YAEIKV------REAGL-QDHIRFYLCDYRQLP-------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 72 ~a~~~~------~~~g~-~~~i~~~~~d~~~~~-------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
..++.+ +..+. .++++++.|++.+.- +..++|+|....-. - +.....++.+...|+|||.++
T Consensus 139 ~l~~~l~~~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y--~~t~~~le~~~p~l~~GGvIv 214 (257)
T 3tos_A 139 YLKEVLDAHECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--Y--EPTKAVLEAIRPYLTKGSIVA 214 (257)
T ss_dssp HHHHHHHHHHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--H--HHHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--c--chHHHHHHHHHHHhCCCcEEE
Confidence 122211 12344 478999999986632 23579999987632 1 344678999999999999999
Q ss_pred EEeec
Q 024096 138 LQFIS 142 (272)
Q Consensus 138 i~~~~ 142 (272)
+.++.
T Consensus 215 ~DD~~ 219 (257)
T 3tos_A 215 FDELD 219 (257)
T ss_dssp ESSTT
T ss_pred EcCCC
Confidence 97764
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0029 Score=55.50 Aligned_cols=103 Identities=16% Similarity=0.123 Sum_probs=70.5
Q ss_pred HHHcCCCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-----CC--
Q 024096 27 IEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-----LP-- 97 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-----~~-- 97 (272)
+....+++|++||-+|+|. |.++..+++..++ +|+++|.+++..+.+++. |. ..+...-.+ +.
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----Ga----~~i~~~~~~~~~~~v~~~ 249 (398)
T 1kol_A 178 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF----EIADLSLDTPLHEQIAAL 249 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC----EEEETTSSSCHHHHHHHH
T ss_pred HHHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----CC----cEEccCCcchHHHHHHHH
Confidence 3466788999999999875 7888888887777 899999999888887653 43 223221111 11
Q ss_pred -CCCCccEEEEechhh---------ccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 -KANKYDRIISCGMIE---------HVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~---------~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+-.-... |. .+....++...+.|+++|++++.
T Consensus 250 t~g~g~Dvvid~~G~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 250 LGEPEVDCAVDAVGFEARGHGHEGAKH--EAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGS--BCTTHHHHHHHHHEEEEEEEEEC
T ss_pred hCCCCCCEEEECCCCcccccccccccc--cchHHHHHHHHHHHhcCCEEEEe
Confidence 224699998754321 11 11235788888999999999863
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0029 Score=54.65 Aligned_cols=98 Identities=23% Similarity=0.274 Sum_probs=68.2
Q ss_pred HHHcCCCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc---cCC----CC
Q 024096 27 IEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD---YRQ----LP 97 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d---~~~----~~ 97 (272)
++...+.+|++||-+|+|. |..+..+++..++ +|+++|.++...+.+++. |.. .++..+ ..+ +.
T Consensus 164 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~i~ 236 (356)
T 1pl8_A 164 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD---LVLQISKESPQEIARKVE 236 (356)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEECSSCCHHHHHHHHH
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEEcCcccccchHHHHHH
Confidence 4667889999999999985 7888888887787 999999999888777643 432 233221 011 11
Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+-. .+. ...++...+.|+|+|++++.
T Consensus 237 ~~~~~g~D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 237 GQLGCKPEVTIEC-----TGA---EASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp HHHTSCCSEEEEC-----SCC---HHHHHHHHHHSCTTCEEEEC
T ss_pred HHhCCCCCEEEEC-----CCC---hHHHHHHHHHhcCCCEEEEE
Confidence 11569999864 221 24567788899999999863
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.002 Score=55.25 Aligned_cols=99 Identities=14% Similarity=0.198 Sum_probs=69.5
Q ss_pred HHHHcCCCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CC
Q 024096 26 LIEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KA 99 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~ 99 (272)
.++...+.+|++||-+|+|. |..+..+++..+++|+++|.+++..+.+++. |.. .++..+-.+.. ..
T Consensus 158 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~~i~~~~~~~~~~~~~~~ 230 (340)
T 3s2e_A 158 GLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRL----GAE---VAVNARDTDPAAWLQKEI 230 (340)
T ss_dssp HHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS---EEEETTTSCHHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc----CCC---EEEeCCCcCHHHHHHHhC
Confidence 44666788999999999984 8889999988888999999999988877653 432 22222111111 11
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+.+|+|+... +. ...++.+.+.|+++|++++.
T Consensus 231 g~~d~vid~~-----g~---~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 231 GGAHGVLVTA-----VS---PKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp SSEEEEEESS-----CC---HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEEeC-----CC---HHHHHHHHHHhccCCEEEEe
Confidence 3688887542 11 35677888899999999873
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0029 Score=55.92 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=53.5
Q ss_pred CCCCCEEEEECCCchHHHHHHH-Hc-cC-CEEEEEcCCHHHHHHHHHHHHH--cCCC-CCeEEEEcccCCCC
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIV-KQ-TG-CKYTGITLSEEQLKYAEIKVRE--AGLQ-DHIRFYLCDYRQLP 97 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~-~~-~~-~~v~gvd~s~~~~~~a~~~~~~--~g~~-~~i~~~~~d~~~~~ 97 (272)
++++..|+|+|++.|..+..++ +. +. .+|+++|++|...+..++++.. ++.. +++++++.-+.+-+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~~~ 295 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGENT 295 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECSSC
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEECCC
Confidence 4788999999999999999888 43 32 7999999999999999999987 3322 58888877665543
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.006 Score=53.03 Aligned_cols=98 Identities=19% Similarity=0.246 Sum_probs=69.3
Q ss_pred HHHcCCCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC--------
Q 024096 27 IEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-------- 96 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-------- 96 (272)
++...+.+|++||-+|+|. |..+..+++..|+ +|+++|.++...+.+++. |.. .++...-.+.
T Consensus 175 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~i~~~~ 247 (370)
T 4ej6_A 175 VDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GAT---ATVDPSAGDVVEAIAGPV 247 (370)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTSSCHHHHHHSTT
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEECCCCcCHHHHHHhhh
Confidence 4677889999999999974 7788888888787 999999999888887764 432 2222111111
Q ss_pred -CCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 97 -PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 97 -~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
...+.+|+|+-. .+. ...++.+.+.|+++|++++.
T Consensus 248 ~~~~gg~Dvvid~-----~G~---~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 248 GLVPGGVDVVIEC-----AGV---AETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp SSSTTCEEEEEEC-----SCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred hccCCCCCEEEEC-----CCC---HHHHHHHHHHhccCCEEEEE
Confidence 112379999863 221 35677888899999999874
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.022 Score=48.78 Aligned_cols=158 Identities=9% Similarity=0.081 Sum_probs=102.1
Q ss_pred CCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcC----------------------CCCCeEEE
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAG----------------------LQDHIRFY 89 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g----------------------~~~~i~~~ 89 (272)
+...|+-+|||.=.....+... .+.+++=+|. |+.++.=++.+...+ ..++.+.+
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 4579999999988888887764 3667888886 666666555554311 13578999
Q ss_pred EcccCCCC-----------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhh
Q 024096 90 LCDYRQLP-----------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFI 158 (272)
Q Consensus 90 ~~d~~~~~-----------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 158 (272)
.+|+.+.. ..+..-++++-.++.+++.+....+++.+.+... +|.+++-+...+.+.+... ....+
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d~fg~~--M~~~l 245 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGDRFGQI--MIENL 245 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTSHHHHH--HHHHH
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCCHHHHH--HHHHH
Confidence 99987631 1245568899999999999889999999998765 4555555666554432211 00111
Q ss_pred hhccc--CC-CCCCCHHHHHHHhhcCCCcEEEEEEecCccH
Q 024096 159 KEYIF--PG-GCLPSLGRVTSAMTSSSGLCVEHLENIGIHY 196 (272)
Q Consensus 159 ~~~~~--p~-~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~ 196 (272)
...-. ++ ..+++.++..+.+ .++||......++..-|
T Consensus 246 ~~~g~pl~sl~~y~t~~~~~~r~-~~~Gw~~~~~~d~~~~~ 285 (334)
T 3iei_A 246 RRRQCDLAGVETCKSLESQKERL-LSNGWETASAVDMMELY 285 (334)
T ss_dssp HTTTCCCTTGGGGGCHHHHHHHH-HTTTCSEEEEEEHHHHH
T ss_pred HHhCCCCcccccCCCHHHHHHHH-HHcCCCcceeecHHHHH
Confidence 11111 11 1346667776555 46999988777765444
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0032 Score=54.27 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=70.0
Q ss_pred HHHHcCCCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------
Q 024096 26 LIEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------ 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------ 97 (272)
.++...+++|++||-+|+|. |..+..+++..++ +|+++|.++...+.+++. |.. .++..+-.+..
T Consensus 158 al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~v~~~ 230 (352)
T 3fpc_A 158 GAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GAT---DIINYKNGDIVEQILKA 230 (352)
T ss_dssp HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCC---EEECGGGSCHHHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc---eEEcCCCcCHHHHHHHH
Confidence 45777889999999999984 7788888888777 899999999888887764 431 23322111111
Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+-. .+. ...++.+.+.|+|+|++++.
T Consensus 231 t~g~g~D~v~d~-----~g~---~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 231 TDGKGVDKVVIA-----GGD---VHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp TTTCCEEEEEEC-----SSC---TTHHHHHHHHEEEEEEEEEC
T ss_pred cCCCCCCEEEEC-----CCC---hHHHHHHHHHHhcCCEEEEe
Confidence 23469999863 221 24667788899999999874
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0066 Score=47.59 Aligned_cols=93 Identities=23% Similarity=0.246 Sum_probs=62.8
Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--------
Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------- 97 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------- 97 (272)
+...+.++++||..|+ |.|.....++...|++|++++.+++..+.+++ .|. . ... |..+..
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~--~-~~~--d~~~~~~~~~~~~~ 102 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGV--E-YVG--DSRSVDFADEILEL 102 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCC--S-EEE--ETTCSTHHHHHHHH
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC--C-EEe--eCCcHHHHHHHHHH
Confidence 4457889999999994 46666666666668899999999887766543 242 1 222 322211
Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
....+|+|+.+. + ...++.+.+.|+|+|++++
T Consensus 103 ~~~~~~D~vi~~~-----g----~~~~~~~~~~l~~~G~~v~ 135 (198)
T 1pqw_A 103 TDGYGVDVVLNSL-----A----GEAIQRGVQILAPGGRFIE 135 (198)
T ss_dssp TTTCCEEEEEECC-----C----THHHHHHHHTEEEEEEEEE
T ss_pred hCCCCCeEEEECC-----c----hHHHHHHHHHhccCCEEEE
Confidence 124699998643 2 1356778889999999986
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0038 Score=54.10 Aligned_cols=97 Identities=21% Similarity=0.150 Sum_probs=68.3
Q ss_pred HHcCCCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CC
Q 024096 28 EKARVSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------KA 99 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~~ 99 (272)
+...+++|++||-+|+|. |..+..+++..|++|++++.++...+.+++. |.. .++..+..++. ..
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~v~~~~~g 255 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL----GAD---HGINRLEEDWVERVYALTGD 255 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc----CCC---EEEcCCcccHHHHHHHHhCC
Confidence 566788999999999884 7788888887889999999999888887654 432 23332211211 23
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
..+|+|+-.-. . ..+..+.+.|+++|++++..
T Consensus 256 ~g~D~vid~~g-----~----~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 256 RGADHILEIAG-----G----AGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp CCEEEEEEETT-----S----SCHHHHHHHEEEEEEEEEEC
T ss_pred CCceEEEECCC-----h----HHHHHHHHHhhcCCEEEEEe
Confidence 47999986533 1 23556777899999998753
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.01 Score=51.02 Aligned_cols=98 Identities=24% Similarity=0.303 Sum_probs=68.0
Q ss_pred HHHcCCCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-CCCC-------
Q 024096 27 IEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY-RQLP------- 97 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~-~~~~------- 97 (272)
++...+.+|++||-+|+|. |..+..+++..+++|++++.+++..+.+++ .|.. .++..+- .+..
T Consensus 161 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~~~i~~~~ 233 (352)
T 1e3j_A 161 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGAD---VTLVVDPAKEEESSIIERI 233 (352)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS---EEEECCTTTSCHHHHHHHH
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC---EEEcCcccccHHHHHHHHh
Confidence 4666788999999999874 777888888778899999999988887764 3432 2222210 1111
Q ss_pred C---CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 K---ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ~---~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
. ...+|+|+-. .+. ...++...+.|+++|++++.
T Consensus 234 ~~~~g~g~D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 234 RSAIGDLPNVTIDC-----SGN---EKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HHHSSSCCSEEEEC-----SCC---HHHHHHHHHHSCTTCEEEEC
T ss_pred ccccCCCCCEEEEC-----CCC---HHHHHHHHHHHhcCCEEEEE
Confidence 1 2469999864 221 24567778899999999873
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.005 Score=53.26 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=70.5
Q ss_pred HHHHcCCCCCCEEEEECCCc-hHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc------cCC-C
Q 024096 26 LIEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD------YRQ-L 96 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d------~~~-~ 96 (272)
.++...+.+|++||-+|+|. |..+..+++..|++ |+++|.+++..+.+++. . +.+..+..+ +.+ +
T Consensus 171 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~-----~~~~~~~~~~~~~~~~~~~v 244 (363)
T 3m6i_A 171 GLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C-----PEVVTHKVERLSAEESAKKI 244 (363)
T ss_dssp HHHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C-----TTCEEEECCSCCHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c-----hhcccccccccchHHHHHHH
Confidence 34677889999999999874 77888888887886 99999999999888765 2 122222221 111 1
Q ss_pred ---CCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 97 ---PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 97 ---~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.....+|+|+-. .+. ...++.+.+.|+++|++++.
T Consensus 245 ~~~t~g~g~Dvvid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 245 VESFGGIEPAVALEC-----TGV---ESSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp HHHTSSCCCSEEEEC-----SCC---HHHHHHHHHHSCTTCEEEEC
T ss_pred HHHhCCCCCCEEEEC-----CCC---hHHHHHHHHHhcCCCEEEEE
Confidence 123579999864 322 34677788899999999874
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0051 Score=52.74 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=67.3
Q ss_pred HHHHHHcCCCCCCEEEEECCC--chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----
Q 024096 24 SVLIEKARVSKGQEVLDIGCG--WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---- 97 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---- 97 (272)
..+.+...+++|++||-+|+| .|..+..+++..|++|++++.+++..+.+++. |.. .++...-.+..
T Consensus 134 ~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----ga~---~~~~~~~~~~~~~~~ 206 (340)
T 3gms_A 134 VTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL----GAA---YVIDTSTAPLYETVM 206 (340)
T ss_dssp HHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEETTTSCHHHHHH
T ss_pred HHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC----CCc---EEEeCCcccHHHHHH
Confidence 344566788999999999986 67788888887789999999998888877653 431 22222111111
Q ss_pred ---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 ---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+-.- +.. . .....+.|+++|++++.
T Consensus 207 ~~~~~~g~Dvvid~~-----g~~---~-~~~~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 207 ELTNGIGADAAIDSI-----GGP---D-GNELAFSLRPNGHFLTI 242 (340)
T ss_dssp HHTTTSCEEEEEESS-----CHH---H-HHHHHHTEEEEEEEEEC
T ss_pred HHhCCCCCcEEEECC-----CCh---h-HHHHHHHhcCCCEEEEE
Confidence 234799998643 222 1 22344789999999873
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0059 Score=53.10 Aligned_cols=96 Identities=19% Similarity=0.252 Sum_probs=66.7
Q ss_pred HHHHcCCCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc----cCCCCCCC
Q 024096 26 LIEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD----YRQLPKAN 100 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d----~~~~~~~~ 100 (272)
.+....+++|++||-+|+|. |..+..+++..+++|++++.+++..+.+++. |.. .++... ..++ ..
T Consensus 186 al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~--~~ 256 (369)
T 1uuf_A 186 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GAD---EVVNSRNADEMAAH--LK 256 (369)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS---EEEETTCHHHHHTT--TT
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCc---EEeccccHHHHHHh--hc
Confidence 34456788999999999984 7788888887788999999999888887653 431 222211 1111 15
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.+|+|+-.-.. ...++...+.|+++|+++.
T Consensus 257 g~Dvvid~~g~--------~~~~~~~~~~l~~~G~iv~ 286 (369)
T 1uuf_A 257 SFDFILNTVAA--------PHNLDDFTTLLKRDGTMTL 286 (369)
T ss_dssp CEEEEEECCSS--------CCCHHHHHTTEEEEEEEEE
T ss_pred CCCEEEECCCC--------HHHHHHHHHHhccCCEEEE
Confidence 79999864321 1235567789999999886
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.023 Score=49.85 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=63.6
Q ss_pred CCCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CCCC
Q 024096 31 RVSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------KANK 101 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~~~~ 101 (272)
.+.+|++||=+|+|. |..+..+++..++ +|+++|.++...+.+++. |.. .++..+-.+.. ....
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~i~~~t~g~g 282 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD---HVIDPTKENFVEAVLDYTNGLG 282 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEEcCCCCCHHHHHHHHhCCCC
Confidence 678999999999873 7788888887787 999999999988888754 421 23322111111 2347
Q ss_pred ccEEEEechhhccChh--hHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHD--YMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|+|+-. .+.. .....++.+.+.++++|++++.
T Consensus 283 ~D~vid~-----~g~~~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 283 AKLFLEA-----TGVPQLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp CSEEEEC-----SSCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred CCEEEEC-----CCCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence 9999864 2222 1223333334555999999873
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0098 Score=50.81 Aligned_cols=103 Identities=21% Similarity=0.307 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 024096 22 KVSVLIEKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272)
.+..+.+...+.+|++||-.|+ |.|..+..+++..+++|++++.+++..+.+.+ ..|.. .++...-.+..
T Consensus 137 A~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~---~~g~~---~~~~~~~~~~~~~ 210 (336)
T 4b7c_A 137 AYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVE---ELGFD---GAIDYKNEDLAAG 210 (336)
T ss_dssp HHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---TTCCS---EEEETTTSCHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HcCCC---EEEECCCHHHHHH
Confidence 3444557778899999999998 56788888887778899999999987777622 22431 22221111111
Q ss_pred ----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 ----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+.+|+|+.+ .+ ...++.+.+.|+++|++++.
T Consensus 211 ~~~~~~~~~d~vi~~-----~g----~~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 211 LKRECPKGIDVFFDN-----VG----GEILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp HHHHCTTCEEEEEES-----SC----HHHHHHHHTTEEEEEEEEEC
T ss_pred HHHhcCCCceEEEEC-----CC----cchHHHHHHHHhhCCEEEEE
Confidence 12469998864 32 13677788999999999873
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0078 Score=52.41 Aligned_cols=99 Identities=20% Similarity=0.303 Sum_probs=69.0
Q ss_pred HHHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc--cCCCC----
Q 024096 26 LIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD--YRQLP---- 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d--~~~~~---- 97 (272)
+.+...+++|++||-+|+| .|..+..+++..++ +|+++|.+++..+.+++. |.. .++... -.++.
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~i~ 257 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF----GVN---EFVNPKDHDKPIQEVIV 257 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT----TCC---EEECGGGCSSCHHHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---EEEccccCchhHHHHHH
Confidence 4566778899999999997 47788888887777 899999999888877643 432 222221 11111
Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEE
Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQ 139 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 139 (272)
..+.+|+|+-. .+. ...++.+.+.|++| |++++.
T Consensus 258 ~~~~gg~D~vid~-----~g~---~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 258 DLTDGGVDYSFEC-----IGN---VSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp HHTTSCBSEEEEC-----SCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred HhcCCCCCEEEEC-----CCC---HHHHHHHHHHhhccCCEEEEE
Confidence 12379999864 322 35678888999997 999874
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.012 Score=51.08 Aligned_cols=99 Identities=19% Similarity=0.213 Sum_probs=67.9
Q ss_pred HHHHcCCCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc--CCCC----
Q 024096 26 LIEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY--RQLP---- 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~--~~~~---- 97 (272)
+.+...+.+|++||-+|+|. |..+..+++..++ +|+++|.++...+.+++ .|.. .++..+- .++.
T Consensus 183 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~ 255 (373)
T 1p0f_A 183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVIC 255 (373)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---EEEecccccchHHHHHH
Confidence 44566788999999999874 7788888887777 89999999988877764 3432 2222111 1111
Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEE
Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQ 139 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 139 (272)
..+.+|+|+-. .+. ...++...+.|+++ |++++.
T Consensus 256 ~~t~gg~Dvvid~-----~g~---~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 256 EKTNGGVDYAVEC-----AGR---IETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp HHTTSCBSEEEEC-----SCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHhCCCCCEEEEC-----CCC---HHHHHHHHHHHhcCCCEEEEE
Confidence 12379999854 221 35677888999999 999863
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0062 Score=51.58 Aligned_cols=93 Identities=22% Similarity=0.311 Sum_probs=64.7
Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE
Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRI 105 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V 105 (272)
++...+++|++||-+|+| .|..+..+++..|++|++++ +++..+.+++. |. ..++. |..++ ...+|+|
T Consensus 135 l~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~l----Ga---~~v~~-d~~~v--~~g~Dvv 203 (315)
T 3goh_A 135 FEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKR----GV---RHLYR-EPSQV--TQKYFAI 203 (315)
T ss_dssp HTTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHH----TE---EEEES-SGGGC--CSCEEEE
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHc----CC---CEEEc-CHHHh--CCCccEE
Confidence 367778899999999997 57888888888788999999 88888877653 42 22332 42223 4679998
Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+-. .+.+ .+..+.+.|+++|+++..
T Consensus 204 ~d~-----~g~~----~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 204 FDA-----VNSQ----NAAALVPSLKANGHIICI 228 (315)
T ss_dssp ECC----------------TTGGGEEEEEEEEEE
T ss_pred EEC-----CCch----hHHHHHHHhcCCCEEEEE
Confidence 853 2211 235678899999999874
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.018 Score=48.99 Aligned_cols=98 Identities=21% Similarity=0.187 Sum_probs=67.1
Q ss_pred HHHHcCCCCCCEEEEEC-C-CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------
Q 024096 26 LIEKARVSKGQEVLDIG-C-GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------ 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG-~-G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------ 97 (272)
+.+...+++|++||-.| + |.|..+..+++..|++|++++.+++..+.+++. |.. .++..+-.+..
T Consensus 132 l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----Ga~---~~~~~~~~~~~~~~~~~ 204 (325)
T 3jyn_A 132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKAL----GAW---ETIDYSHEDVAKRVLEL 204 (325)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCC---EEEeCCCccHHHHHHHH
Confidence 33445788999999998 3 467888888887788999999999888877653 421 22322211111
Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+..-. . ..+....+.|+++|++++.
T Consensus 205 ~~~~g~Dvvid~~g-----~----~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 205 TDGKKCPVVYDGVG-----Q----DTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp TTTCCEEEEEESSC-----G----GGHHHHHTTEEEEEEEEEC
T ss_pred hCCCCceEEEECCC-----h----HHHHHHHHHhcCCCEEEEE
Confidence 2347999986432 1 2456678899999999874
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.018 Score=49.88 Aligned_cols=99 Identities=16% Similarity=0.255 Sum_probs=67.9
Q ss_pred HHHHcCCCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc--CCCC----
Q 024096 26 LIEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY--RQLP---- 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~--~~~~---- 97 (272)
+.+...+++|++||-+|+|. |..+..+++..++ +|++++.++...+.+++. |.. .++..+- .++.
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~v~ 254 (373)
T 2fzw_A 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVLI 254 (373)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEeccccccccHHHHHH
Confidence 34556788999999999874 7778888887777 899999999888887653 432 2222110 1111
Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEE
Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQ 139 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 139 (272)
..+.+|+|+-. .+. ...++.+.+.|+++ |++++.
T Consensus 255 ~~~~~g~D~vid~-----~g~---~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 255 EMTDGGVDYSFEC-----IGN---VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp HHTTSCBSEEEEC-----SCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHhCCCCCEEEEC-----CCc---HHHHHHHHHhhccCCcEEEEE
Confidence 12379999854 221 34677888999999 999863
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.016 Score=50.36 Aligned_cols=99 Identities=19% Similarity=0.283 Sum_probs=67.6
Q ss_pred HHHHcCCCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc--CCCC----
Q 024096 26 LIEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY--RQLP---- 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~--~~~~---- 97 (272)
+.+...+.+|++||-+|+|. |..+..+++..++ +|+++|.+++..+.+++. |.. .++..+- .++.
T Consensus 184 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~~ 256 (374)
T 1cdo_A 184 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----GAT---DFVNPNDHSEPISQVLS 256 (374)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCC---EEECGGGCSSCHHHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCc---eEEeccccchhHHHHHH
Confidence 34556788999999999874 7788888887787 899999999888877643 431 2222110 1111
Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEE
Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQ 139 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 139 (272)
..+.+|+|+-. .+. ...++.+.+.|+++ |++++.
T Consensus 257 ~~~~~g~D~vid~-----~g~---~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 257 KMTNGGVDFSLEC-----VGN---VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp HHHTSCBSEEEEC-----SCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHhCCCCCEEEEC-----CCC---HHHHHHHHHHhhcCCcEEEEE
Confidence 12379999864 221 34677888999999 999863
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.39 E-value=0.02 Score=49.68 Aligned_cols=99 Identities=17% Similarity=0.228 Sum_probs=67.3
Q ss_pred HHHHcCCCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc--CCCC----
Q 024096 26 LIEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY--RQLP---- 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~--~~~~---- 97 (272)
+.+...+.+|++||-+|+|. |..+..+++..++ +|++++.+++..+.+++. |.. .++..+- .++.
T Consensus 183 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~~ 255 (374)
T 2jhf_A 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GAT---ECVNPQDYKKPIQEVLT 255 (374)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCc---eEecccccchhHHHHHH
Confidence 34556788999999999874 7778888887777 899999999888777542 431 2222111 1111
Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEE
Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQ 139 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 139 (272)
..+.+|+|+-. .+. ...++...+.|+++ |++++.
T Consensus 256 ~~~~~g~D~vid~-----~g~---~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 256 EMSNGGVDFSFEV-----IGR---LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp HHTTSCBSEEEEC-----SCC---HHHHHHHHHHBCTTTCEEEEC
T ss_pred HHhCCCCcEEEEC-----CCC---HHHHHHHHHHhhcCCcEEEEe
Confidence 12379999854 221 34667788899999 998863
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.021 Score=48.69 Aligned_cols=98 Identities=27% Similarity=0.415 Sum_probs=66.3
Q ss_pred HHHHHHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC---CC-
Q 024096 24 SVLIEKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ---LP- 97 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~---~~- 97 (272)
..+.+...+.++++||-.|+ |.|..+..+++..+++|++++.+++..+.+++ .|. . .. .|..+ ..
T Consensus 135 ~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~--~-~~--~d~~~~~~~~~ 205 (333)
T 1v3u_A 135 FGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ----IGF--D-AA--FNYKTVNSLEE 205 (333)
T ss_dssp HHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC--S-EE--EETTSCSCHHH
T ss_pred HHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCC--c-EE--EecCCHHHHHH
Confidence 33445667889999999997 56777777777678899999999887777633 232 1 12 23322 10
Q ss_pred -----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 -----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 -----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+.+|+|+.+- +. ..++...+.|+++|++++.
T Consensus 206 ~~~~~~~~~~d~vi~~~-----g~----~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 206 ALKKASPDGYDCYFDNV-----GG----EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp HHHHHCTTCEEEEEESS-----CH----HHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHhCCCCeEEEECC-----Ch----HHHHHHHHHHhcCCEEEEE
Confidence 124699988653 21 2467788999999999863
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.017 Score=49.22 Aligned_cols=96 Identities=21% Similarity=0.237 Sum_probs=65.6
Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------C
Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------K 98 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~ 98 (272)
+...+.+|++||-+|+ |.|..+..+++..|++|++++.+++..+.+++. |. ..++..+-.+.. .
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga---~~~~~~~~~~~~~~~~~~~~ 214 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEY----GA---EYLINASKEDILRQVLKFTN 214 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC---SEEEETTTSCHHHHHHHHTT
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC---cEEEeCCCchHHHHHHHHhC
Confidence 3457889999999994 467788888877789999999999888777553 42 123322212111 2
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
...+|+|+..-.- ..++.+.+.|+++|++++.
T Consensus 215 ~~g~D~vid~~g~---------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 215 GKGVDASFDSVGK---------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp TSCEEEEEECCGG---------GGHHHHHHHEEEEEEEEEC
T ss_pred CCCceEEEECCCh---------HHHHHHHHHhccCCEEEEE
Confidence 3479999865321 3456677889999999874
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0026 Score=54.67 Aligned_cols=93 Identities=24% Similarity=0.233 Sum_probs=64.8
Q ss_pred CCCCCCEEEEECCCc-hHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc----cc-CCCCCCCCc
Q 024096 31 RVSKGQEVLDIGCGW-GTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC----DY-RQLPKANKY 102 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~-G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~----d~-~~~~~~~~f 102 (272)
.+ +|++||-+|+|. |..+..+++.. +++|++++.+++..+.+++. |.. .++.. |. .++.....+
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~~g~g~ 239 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL----GAD---YVSEMKDAESLINKLTDGLGA 239 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH----TCS---EEECHHHHHHHHHHHHTTCCE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh----CCC---EEeccccchHHHHHhhcCCCc
Confidence 67 999999999974 77788888876 99999999999888887653 431 22211 11 111123479
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
|+|+-. .+. ...++.+.+.|+++|++++.
T Consensus 240 D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 240 SIAIDL-----VGT---EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp EEEEES-----SCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred cEEEEC-----CCC---hHHHHHHHHHhhcCCEEEEe
Confidence 999864 221 24677788899999998863
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.012 Score=50.39 Aligned_cols=93 Identities=16% Similarity=0.298 Sum_probs=66.5
Q ss_pred CCCCCCEEEEECCCc-hHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CCCC
Q 024096 31 RVSKGQEVLDIGCGW-GTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------KANK 101 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~~~~ 101 (272)
.+.++++||-+|+|. |..+..+++. .+.+|+++|.+++..+.+++. |.. .++..+- +.. ....
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l----Ga~---~~i~~~~-~~~~~v~~~t~g~g 239 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV----GAD---AAVKSGA-GAADAIRELTGGQG 239 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT----TCS---EEEECST-THHHHHHHHHGGGC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCC---EEEcCCC-cHHHHHHHHhCCCC
Confidence 678999999999975 7888888887 478999999999988887653 432 2232221 111 1237
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|+|+-. .+. ...++.+.+.|+++|++++.
T Consensus 240 ~d~v~d~-----~G~---~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 240 ATAVFDF-----VGA---QSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp EEEEEES-----SCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred CeEEEEC-----CCC---HHHHHHHHHHHhcCCEEEEE
Confidence 9998863 332 34778888999999999874
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.021 Score=49.78 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=55.9
Q ss_pred CEEEEECCCchHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC---------CCCccEE
Q 024096 36 QEVLDIGCGWGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK---------ANKYDRI 105 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~---------~~~fD~V 105 (272)
.+++|+-||.|+++.-+.+. |.+ +.++|+++..++..+.+. ++..++++|+.++.. ...+|+|
T Consensus 3 ~~vidLFsG~GGlslG~~~a-G~~~v~avE~d~~a~~t~~~N~------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i 75 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA-GFDVKMAVEIDQHAINTHAINF------PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGI 75 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH-TCEEEEEECSCHHHHHHHHHHC------TTSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred CeEEEEccCcCHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHhC------CCCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence 58999999999999998886 554 669999999888777663 256788999988751 3579999
Q ss_pred EEechhhc
Q 024096 106 ISCGMIEH 113 (272)
Q Consensus 106 ~~~~~~~~ 113 (272)
+.......
T Consensus 76 ~ggpPCQ~ 83 (376)
T 3g7u_A 76 IGGPPCQG 83 (376)
T ss_dssp EECCCCCT
T ss_pred EecCCCCC
Confidence 98765443
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.013 Score=51.04 Aligned_cols=99 Identities=20% Similarity=0.219 Sum_probs=67.2
Q ss_pred HHHHcC-CCCCCEEEEECCC-chHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc---cCC----
Q 024096 26 LIEKAR-VSKGQEVLDIGCG-WGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD---YRQ---- 95 (272)
Q Consensus 26 l~~~l~-~~~~~~vLDiG~G-~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d---~~~---- 95 (272)
.++... +.+|++||-+|+| .|..+..+++..+ .+|++++.+++..+.+++ .|.. .++..+ -.+
T Consensus 186 al~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~ 258 (380)
T 1vj0_A 186 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKA 258 (380)
T ss_dssp HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHH
T ss_pred HHHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHH
Confidence 345667 8899999999977 5777888888778 599999999988887764 3431 233221 011
Q ss_pred C---CCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 96 L---PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 96 ~---~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+ .....+|+|+-.- +. ...++...+.|+++|++++.
T Consensus 259 v~~~~~g~g~Dvvid~~-----g~---~~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 259 IMDITHGRGADFILEAT-----GD---SRALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp HHHHTTTSCEEEEEECS-----SC---TTHHHHHHHHEEEEEEEEEC
T ss_pred HHHHhCCCCCcEEEECC-----CC---HHHHHHHHHHHhcCCEEEEE
Confidence 1 1223699998642 21 23566778889999999863
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.019 Score=49.90 Aligned_cols=99 Identities=20% Similarity=0.242 Sum_probs=67.6
Q ss_pred HHHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc--CCCC----
Q 024096 26 LIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY--RQLP---- 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~--~~~~---- 97 (272)
+.+...+.+|++||-+|+| .|..+..+++..++ +|+++|.+++..+.+++. |.. .++..+- .++.
T Consensus 187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~v~ 259 (376)
T 1e3i_A 187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT---DCLNPRELDKPVQDVIT 259 (376)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCc---EEEccccccchHHHHHH
Confidence 4456678899999999987 47788888887787 899999999888777543 431 2222110 1111
Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEE
Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQ 139 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 139 (272)
..+.+|+|+-. .+. ...++.+.+.|+++ |++++.
T Consensus 260 ~~~~~g~Dvvid~-----~G~---~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 260 ELTAGGVDYSLDC-----AGT---AQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp HHHTSCBSEEEES-----SCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHhCCCccEEEEC-----CCC---HHHHHHHHHHhhcCCCEEEEE
Confidence 12379999853 321 35677888999999 999863
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0061 Score=52.05 Aligned_cols=73 Identities=12% Similarity=0.133 Sum_probs=54.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272)
..+..+++.. ..+|+.|||.-||+|..+....+. +.+.+|+|+++...+.++++++..+. ....++.|+.+++
T Consensus 240 ~l~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~~-gr~~ig~e~~~~~~~~~~~r~~~~~~--~~~~~~~~~~~i~ 312 (323)
T 1boo_A 240 KLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERE-SRKWISFEMKPEYVAASAFRFLDNNI--SEEKITDIYNRIL 312 (323)
T ss_dssp HHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHGGGSCSCS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhccc--chHHHHHHHHHHH
Confidence 3445566554 468899999999999999887775 89999999999999999998765543 2344444444433
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.012 Score=50.51 Aligned_cols=96 Identities=21% Similarity=0.266 Sum_probs=67.5
Q ss_pred HHHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------
Q 024096 27 IEKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------- 97 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------- 97 (272)
.+...+++|++||-.|+ |.|..+..+++..|++|++++.+++..+.+++. |.. .++..+ .+..
T Consensus 152 ~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~---~v~~~~-~~~~~~v~~~~ 223 (342)
T 4eye_A 152 ARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV----GAD---IVLPLE-EGWAKAVREAT 223 (342)
T ss_dssp HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS---EEEESS-TTHHHHHHHHT
T ss_pred HHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCc---EEecCc-hhHHHHHHHHh
Confidence 35667889999999997 468888888888889999999998888777653 431 233222 2211
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+-.-.. ..++.+.+.|+++|++++.
T Consensus 224 ~~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 224 GGAGVDMVVDPIGG---------PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp TTSCEEEEEESCC-----------CHHHHHHTEEEEEEEEEC
T ss_pred CCCCceEEEECCch---------hHHHHHHHhhcCCCEEEEE
Confidence 22479999864321 2456777899999999874
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.039 Score=47.49 Aligned_cols=94 Identities=27% Similarity=0.286 Sum_probs=64.5
Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--------
Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------- 97 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------- 97 (272)
+...++++++||-.|+ |.|..+..+++..|++|++++.+++..+.+++ .|.. .++ |..+..
T Consensus 164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~--d~~~~~~~~~~~~~ 234 (351)
T 1yb5_A 164 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH---EVF--NHREVNYIDKIKKY 234 (351)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEE--ETTSTTHHHHHHHH
T ss_pred HhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH----cCCC---EEE--eCCCchHHHHHHHH
Confidence 4567889999999996 56777777777778999999999987776543 2421 222 222211
Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+.+-. ...+....+.|+++|++++.
T Consensus 235 ~~~~~~D~vi~~~G---------~~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 235 VGEKGIDIIIEMLA---------NVNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp HCTTCEEEEEESCH---------HHHHHHHHHHEEEEEEEEEC
T ss_pred cCCCCcEEEEECCC---------hHHHHHHHHhccCCCEEEEE
Confidence 1247999986532 12456678899999999863
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.028 Score=48.53 Aligned_cols=98 Identities=24% Similarity=0.340 Sum_probs=67.3
Q ss_pred HHHHcCCCCCCEEEEEC--CCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------
Q 024096 26 LIEKARVSKGQEVLDIG--CGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------ 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG--~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------ 97 (272)
+.+...+++|++||-.| .|.|..+..+++..+++|++++.+++..+.+++ .|.. .++..+-.+..
T Consensus 155 l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~ 227 (362)
T 2c0c_A 155 LKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LGCD---RPINYKTEPVGTVLKQE 227 (362)
T ss_dssp HHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHH
T ss_pred HHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHh
Confidence 33455788999999999 457888888888778899999999888777764 3431 22222211111
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+-.- +. ..++.+.+.|+++|++++.
T Consensus 228 ~~~g~D~vid~~-----g~----~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 228 YPEGVDVVYESV-----GG----AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp CTTCEEEEEECS-----CT----HHHHHHHHHEEEEEEEEEC
T ss_pred cCCCCCEEEECC-----CH----HHHHHHHHHHhcCCEEEEE
Confidence 124689998643 21 3567788899999998863
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.018 Score=49.41 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=65.9
Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------
Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------- 97 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------- 97 (272)
++..++ +|++||-+|+| .|..+..+++..++ +|++++.+++..+.+++. |.. .++..+-.++.
T Consensus 161 l~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~---~~~~~~~~~~~~~v~~~~ 232 (348)
T 2d8a_A 161 VLAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GAD---YVINPFEEDVVKEVMDIT 232 (348)
T ss_dssp HTTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHT
T ss_pred HHhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEECCCCcCHHHHHHHHc
Confidence 355677 99999999986 47777888877787 899999999888877643 431 22221111111
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+..-. . ...++.+.+.|+++|+++..
T Consensus 233 ~g~g~D~vid~~g-----~---~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 233 DGNGVDVFLEFSG-----A---PKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp TTSCEEEEEECSC-----C---HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCCEEEECCC-----C---HHHHHHHHHHHhcCCEEEEE
Confidence 1236999986422 1 35667788899999998863
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.019 Score=49.22 Aligned_cols=99 Identities=23% Similarity=0.375 Sum_probs=67.2
Q ss_pred HHHHcCCCCCCEEEEECCC--chHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----C-
Q 024096 26 LIEKARVSKGQEVLDIGCG--WGTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL----P- 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G--~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~- 97 (272)
.+....++++++||-.|+| .|..+..+++.. +++|+++|.+++..+.+++. |.. .++...-.+. .
T Consensus 162 ~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~ 234 (347)
T 1jvb_A 162 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRR 234 (347)
T ss_dssp HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCC---EEecCCCccHHHHHHH
Confidence 3455778899999999987 566777777776 99999999999888777543 321 2222111111 1
Q ss_pred -CC-CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 -KA-NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 -~~-~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.. +.+|+|+..- +. ...++...+.|+++|++++.
T Consensus 235 ~~~~~~~d~vi~~~-----g~---~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 235 ITESKGVDAVIDLN-----NS---EKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp HTTTSCEEEEEESC-----CC---HHHHTTGGGGEEEEEEEEEC
T ss_pred HhcCCCceEEEECC-----CC---HHHHHHHHHHHhcCCEEEEE
Confidence 11 4799988642 21 34677788999999998863
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.04 Score=47.21 Aligned_cols=98 Identities=18% Similarity=0.306 Sum_probs=67.2
Q ss_pred HHHHHcCCC------CCCEEEEE-CCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC
Q 024096 25 VLIEKARVS------KGQEVLDI-GCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL 96 (272)
Q Consensus 25 ~l~~~l~~~------~~~~vLDi-G~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 96 (272)
.+.+...+. +|++||-+ |+| .|..+..+++..|++|++++.+++..+.+++. |.. .++..+ .+.
T Consensus 135 ~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~-~~~ 206 (346)
T 3fbg_A 135 TLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKM----GAD---IVLNHK-ESL 206 (346)
T ss_dssp HHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHH----TCS---EEECTT-SCH
T ss_pred HHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCc---EEEECC-ccH
Confidence 344566676 89999999 454 67788888887889999999999888887763 421 222111 111
Q ss_pred C------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 97 P------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 97 ~------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
. ....+|+|+-. .+. ...++.+.+.|+++|+++.
T Consensus 207 ~~~~~~~~~~g~Dvv~d~-----~g~---~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 207 LNQFKTQGIELVDYVFCT-----FNT---DMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp HHHHHHHTCCCEEEEEES-----SCH---HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHhCCCCccEEEEC-----CCc---hHHHHHHHHHhccCCEEEE
Confidence 1 23579998863 221 3566778889999999975
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0088 Score=50.95 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCH---HHHHHHHHHHHHcC
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSE---EQLKYAEIKVREAG 81 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~---~~~~~a~~~~~~~g 81 (272)
...++.+++... .+|+.|||.-||+|..+....+. +.+.+|+|+++ ..++.++++++..+
T Consensus 229 ~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~-~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 229 AAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp HHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHc-CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 445566776654 68899999999999999987775 88999999999 99999999876543
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.16 E-value=0.016 Score=49.52 Aligned_cols=71 Identities=14% Similarity=0.100 Sum_probs=54.7
Q ss_pred CCEEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEechh
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGMI 111 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~~ 111 (272)
+.+++|+.||.|+++.-+.+. |. .+.++|+++..++..+.+... .. ++|+.++. .-..+|+|+.....
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~~~-----~~---~~Di~~~~~~~~~~~D~l~~gpPC 81 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGE-----KP---EGDITQVNEKTIPDHDILCAGFPC 81 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSC-----CC---BSCGGGSCGGGSCCCSEEEEECCC
T ss_pred CCcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCC-----CC---cCCHHHcCHhhCCCCCEEEECCCC
Confidence 579999999999999998886 54 577899999998888887632 11 68888776 22469999998655
Q ss_pred hcc
Q 024096 112 EHV 114 (272)
Q Consensus 112 ~~~ 114 (272)
..+
T Consensus 82 Q~f 84 (327)
T 2c7p_A 82 QAF 84 (327)
T ss_dssp TTT
T ss_pred CCc
Confidence 444
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.017 Score=49.91 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=66.4
Q ss_pred HHHHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC-CCC--CCCC
Q 024096 26 LIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR-QLP--KANK 101 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~-~~~--~~~~ 101 (272)
.+...++.+|++||-+|+| .|..+..+++..+++|++++.++...+.+++. |.. .++..+-. +.. -.+.
T Consensus 171 ~l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~v~~~~~~~~~~~~~~~~ 243 (360)
T 1piw_A 171 PLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYFDT 243 (360)
T ss_dssp HHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSCSC
T ss_pred HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc----CCC---EEEcCcCchHHHHHhhcC
Confidence 3445788899999999986 47778888877788999999998888877653 431 22322111 111 1147
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|+|+-.-... + ...++.+.+.|+++|+++..
T Consensus 244 ~D~vid~~g~~--~----~~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 244 FDLIVVCASSL--T----DIDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp EEEEEECCSCS--T----TCCTTTGGGGEEEEEEEEEC
T ss_pred CCEEEECCCCC--c----HHHHHHHHHHhcCCCEEEEe
Confidence 99998653320 0 12344567889999998863
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.024 Score=48.79 Aligned_cols=97 Identities=23% Similarity=0.246 Sum_probs=66.3
Q ss_pred HHHcCCCCCCEEEEEC--CCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------C
Q 024096 27 IEKARVSKGQEVLDIG--CGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------K 98 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG--~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------~ 98 (272)
.+...++++++||-.| .|.|..+..+++..|++|++++.+++..+.+++. |.. .++..+-.+.. .
T Consensus 160 ~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~~~~~~~~~~~~~~~~~~ 232 (353)
T 4dup_A 160 FQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERL----GAK---RGINYRSEDFAAVIKAET 232 (353)
T ss_dssp TTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHH
T ss_pred HHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC---EEEeCCchHHHHHHHHHh
Confidence 3556788999999995 3467788888887889999999999988887653 421 22222211111 1
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
...+|+|+..-. . ..+....+.|+++|++++.
T Consensus 233 ~~g~Dvvid~~g-----~----~~~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 233 GQGVDIILDMIG-----A----AYFERNIASLAKDGCLSII 264 (353)
T ss_dssp SSCEEEEEESCC-----G----GGHHHHHHTEEEEEEEEEC
T ss_pred CCCceEEEECCC-----H----HHHHHHHHHhccCCEEEEE
Confidence 246999886432 2 2456677889999998873
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0055 Score=52.79 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=54.9
Q ss_pred CEEEEECCCchHHHHHHHHccC---CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC----CCCccEEEEe
Q 024096 36 QEVLDIGCGWGTLAIEIVKQTG---CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK----ANKYDRIISC 108 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~~~---~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~----~~~fD~V~~~ 108 (272)
.+|+|+.||.|+++.-+.+. | ..+.++|+++..++..+.+.. ...++++|+.++.. ...+|+|+..
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~-G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~~~~~D~l~~g 75 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CeEEEeCcCccHHHHHHHHC-CCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcCcCCcCEEEEc
Confidence 58999999999999998886 4 368999999999988888752 34578899988762 1269999998
Q ss_pred chhhcc
Q 024096 109 GMIEHV 114 (272)
Q Consensus 109 ~~~~~~ 114 (272)
.....+
T Consensus 76 pPCq~f 81 (343)
T 1g55_A 76 PPCQPF 81 (343)
T ss_dssp CC----
T ss_pred CCCcch
Confidence 764433
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.041 Score=47.05 Aligned_cols=99 Identities=20% Similarity=0.312 Sum_probs=67.5
Q ss_pred HHHHHHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC---CC-
Q 024096 24 SVLIEKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ---LP- 97 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~---~~- 97 (272)
..+.+..++.+|++||-.|+ |.|..+..+++..+++|++++.++...+.+++. .|.. .++ |..+ ..
T Consensus 145 ~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~---~g~~---~~~--d~~~~~~~~~ 216 (345)
T 2j3h_A 145 AGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTK---FGFD---DAF--NYKEESDLTA 216 (345)
T ss_dssp HHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---SCCS---EEE--ETTSCSCSHH
T ss_pred HHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCc---eEE--ecCCHHHHHH
Confidence 33445667889999999997 577777888877788999999998877776532 2321 222 3221 11
Q ss_pred -----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 -----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 -----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+.+- + ...++...+.|+++|++++.
T Consensus 217 ~~~~~~~~~~d~vi~~~-----g----~~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 217 ALKRCFPNGIDIYFENV-----G----GKMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp HHHHHCTTCEEEEEESS-----C----HHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHhCCCCcEEEECC-----C----HHHHHHHHHHHhcCCEEEEE
Confidence 124689988642 2 13677788899999999863
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.073 Score=46.37 Aligned_cols=79 Identities=11% Similarity=0.221 Sum_probs=49.7
Q ss_pred HHcCCCCCCEEEEECCCchHHHHHHHHc--------cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 024096 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQ--------TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA 99 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~--------~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~ 99 (272)
+.+.....-.|+|+|.|.|.++..+.+. ...+++.||+|+...+.=++++... +++.+. .++.++|.
T Consensus 74 ~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~---~~v~W~-~~l~~lp~- 148 (387)
T 1zkd_A 74 KAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI---RNIHWH-DSFEDVPE- 148 (387)
T ss_dssp HHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC---SSEEEE-SSGGGSCC-
T ss_pred HHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC---CCeEEe-CChhhcCC-
Confidence 3455455568999999999998877643 1348999999999888666555332 245544 23444441
Q ss_pred CCccEEEEechhh
Q 024096 100 NKYDRIISCGMIE 112 (272)
Q Consensus 100 ~~fD~V~~~~~~~ 112 (272)
..-+|++++.+.
T Consensus 149 -~~~~viANE~fD 160 (387)
T 1zkd_A 149 -GPAVILANEYFD 160 (387)
T ss_dssp -SSEEEEEESSGG
T ss_pred -CCeEEEeccccc
Confidence 133555555443
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.022 Score=48.26 Aligned_cols=96 Identities=18% Similarity=0.288 Sum_probs=65.3
Q ss_pred HHcCCCCCC-EEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-cccCCCC--CCCC
Q 024096 28 EKARVSKGQ-EVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL-CDYRQLP--KANK 101 (272)
Q Consensus 28 ~~l~~~~~~-~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~-~d~~~~~--~~~~ 101 (272)
.+..+.++. +||=.|+ |.|..+..+++..|++|++++.+++..+.+++. |.. .++. .+..... ..+.
T Consensus 139 ~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~~~ 211 (324)
T 3nx4_A 139 EDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSL----GAN---RILSRDEFAESRPLEKQL 211 (324)
T ss_dssp HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TCS---EEEEGGGSSCCCSSCCCC
T ss_pred hhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC---EEEecCCHHHHHhhcCCC
Confidence 455565532 4999986 478888999988888999999999888888653 432 2221 1211111 2357
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|+|+-. .+. ..++.+.+.|+++|+++..
T Consensus 212 ~d~v~d~-----~g~----~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 212 WAGAIDT-----VGD----KVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp EEEEEES-----SCH----HHHHHHHHTEEEEEEEEEC
T ss_pred ccEEEEC-----CCc----HHHHHHHHHHhcCCEEEEE
Confidence 8987753 332 3778888999999999873
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.02 Score=48.93 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=67.0
Q ss_pred HHHHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--C----
Q 024096 26 LIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--K---- 98 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~---- 98 (272)
.+....+.++++||-+|+| .|..+..+++..+++|++++.++...+.+++ .|.. .++ |..+.. .
T Consensus 156 ~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~~--d~~~~~~~~~~~~ 226 (339)
T 1rjw_A 156 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD---LVV--NPLKEDAAKFMKE 226 (339)
T ss_dssp HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS---EEE--CTTTSCHHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCCC---EEe--cCCCccHHHHHHH
Confidence 3445578899999999986 5777888887778899999999988887754 3431 222 332211 0
Q ss_pred -CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 99 -ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 -~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
...+|+|+..- +. ...++...+.|+++|++++.
T Consensus 227 ~~~~~d~vid~~-----g~---~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 227 KVGGVHAAVVTA-----VS---KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp HHSSEEEEEESS-----CC---HHHHHHHHHHEEEEEEEEEC
T ss_pred HhCCCCEEEECC-----CC---HHHHHHHHHHhhcCCEEEEe
Confidence 04689888642 21 24667788899999998863
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.021 Score=49.03 Aligned_cols=97 Identities=22% Similarity=0.318 Sum_probs=66.3
Q ss_pred HHHHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC---CC---
Q 024096 26 LIEKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ---LP--- 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~---~~--- 97 (272)
.+....+.++++||-+|+ |.|..+..+++..+++|++++.++...+.+++ .|.. .++ |..+ ..
T Consensus 161 ~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~g~~---~~~--d~~~~~~~~~~~ 231 (347)
T 2hcy_A 161 ALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----IGGE---VFI--DFTKEKDIVGAV 231 (347)
T ss_dssp HHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----TTCC---EEE--ETTTCSCHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----cCCc---eEE--ecCccHhHHHHH
Confidence 445557889999999998 46777777777678899999998877766654 2421 222 3321 11
Q ss_pred ---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 ---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+.+|+|+..-. . ...++.+.+.|+++|++++.
T Consensus 232 ~~~~~~~~D~vi~~~g-----~---~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 232 LKATDGGAHGVINVSV-----S---EAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp HHHHTSCEEEEEECSS-----C---HHHHHHHTTSEEEEEEEEEC
T ss_pred HHHhCCCCCEEEECCC-----c---HHHHHHHHHHHhcCCEEEEE
Confidence 0126899886532 1 35678888999999998863
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.049 Score=46.20 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=64.4
Q ss_pred HHcCCCCCCEEEEEC--CCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--------
Q 024096 28 EKARVSKGQEVLDIG--CGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------- 97 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG--~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------- 97 (272)
+...++++++||-.| +|.|..+..+++..+++|++++.+++..+.+++. |.. .++ |..+..
T Consensus 134 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~----g~~---~~~--~~~~~~~~~~~~~~ 204 (327)
T 1qor_A 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW---QVI--NYREEDLVERLKEI 204 (327)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EEE--ETTTSCHHHHHHHH
T ss_pred HhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EEE--ECCCccHHHHHHHH
Confidence 356788999999999 4567777777776788999999998887777652 321 222 222111
Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+.+-. ...++.+.+.|+++|++++.
T Consensus 205 ~~~~~~D~vi~~~g---------~~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 205 TGGKKVRVVYDSVG---------RDTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp TTTCCEEEEEECSC---------GGGHHHHHHTEEEEEEEEEC
T ss_pred hCCCCceEEEECCc---------hHHHHHHHHHhcCCCEEEEE
Confidence 1246999987533 13466778899999998863
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.061 Score=39.57 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=57.9
Q ss_pred CCEEEEECCCc-hHH-HHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEE
Q 024096 35 GQEVLDIGCGW-GTL-AIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIIS 107 (272)
Q Consensus 35 ~~~vLDiG~G~-G~~-~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~ 107 (272)
..+|+=+|+|. |.. +..|.+ .+.+|+++|.+++.++.+++. .+.++.+|..+.. ....+|+|++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~~~~~~~~~--------g~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRTRVDELRER--------GVRAVLGNAANEEIMQLAHLECAKWLIL 77 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHT--------TCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHc--------CCCEEECCCCCHHHHHhcCcccCCEEEE
Confidence 35899999974 332 233333 578999999999888776542 4678999986643 2357898887
Q ss_pred echhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 108 CGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.. ++......+-...+.+.|+.+++.
T Consensus 78 ~~-----~~~~~n~~~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 78 TI-----PNGYEAGEIVASARAKNPDIEIIA 103 (140)
T ss_dssp CC-----SCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred EC-----CChHHHHHHHHHHHHHCCCCeEEE
Confidence 42 222222333345566678887665
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.048 Score=47.14 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=67.8
Q ss_pred HHHHcCCC-----CCCEEEEEC-CC-chHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-----
Q 024096 26 LIEKARVS-----KGQEVLDIG-CG-WGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD----- 92 (272)
Q Consensus 26 l~~~l~~~-----~~~~vLDiG-~G-~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d----- 92 (272)
+.+...+. +|++||-+| +| .|..+..+++. .+++|++++.+++..+.+++ .|.. .++...
T Consensus 158 l~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad---~vi~~~~~~~~ 230 (363)
T 4dvj_A 158 FFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH---HVIDHSKPLAA 230 (363)
T ss_dssp HHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS---EEECTTSCHHH
T ss_pred HHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCCHHH
Confidence 34556666 789999998 55 68888999987 68999999999988887765 3431 222211
Q ss_pred -cCCCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 93 -YRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 93 -~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+.+. ..+.+|+|+-. .+. ...++.+.+.|+++|++++.
T Consensus 231 ~v~~~-~~~g~Dvvid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 231 EVAAL-GLGAPAFVFST-----THT---DKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp HHHTT-CSCCEEEEEEC-----SCH---HHHHHHHHHHSCTTCEEEEC
T ss_pred HHHHh-cCCCceEEEEC-----CCc---hhhHHHHHHHhcCCCEEEEE
Confidence 0111 23579988863 321 35677888999999999874
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.024 Score=48.57 Aligned_cols=103 Identities=20% Similarity=0.213 Sum_probs=65.1
Q ss_pred HHHHHcCCCCCCEEEEECCCch-HHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-C---CC
Q 024096 25 VLIEKARVSKGQEVLDIGCGWG-TLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-L---PK 98 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G-~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-~---~~ 98 (272)
..++....++|++||=+|+|.+ .++..+++. .+++|+++|.+++..+.+++. |...-+.....|..+ + ..
T Consensus 154 ~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~----Ga~~~i~~~~~~~~~~v~~~t~ 229 (348)
T 4eez_A 154 KAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI----GADVTINSGDVNPVDEIKKITG 229 (348)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT----TCSEEEEC-CCCHHHHHHHHTT
T ss_pred eeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc----CCeEEEeCCCCCHHHHhhhhcC
Confidence 3456667889999999999864 455566655 688999999999877766643 432111111112111 1 12
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
...+|.++.... . ...+....+.|+++|++++.
T Consensus 230 g~g~d~~~~~~~----~----~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 230 GLGVQSAIVCAV----A----RIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp SSCEEEEEECCS----C----HHHHHHHHHTEEEEEEEEEC
T ss_pred CCCceEEEEecc----C----cchhheeheeecCCceEEEE
Confidence 235666664321 1 45677788899999999874
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.042 Score=47.05 Aligned_cols=93 Identities=24% Similarity=0.334 Sum_probs=64.8
Q ss_pred HHHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------
Q 024096 27 IEKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------- 97 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------- 97 (272)
.+...+.+|++||-+|+ |.|..+..+++..+++|+++ .++...+.+++. |.. . +. +-.+..
T Consensus 143 ~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l----Ga~---~-i~-~~~~~~~~~~~~~ 212 (343)
T 3gaz_A 143 VDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL----GAT---P-ID-ASREPEDYAAEHT 212 (343)
T ss_dssp TTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH----TSE---E-EE-TTSCHHHHHHHHH
T ss_pred HHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc----CCC---E-ec-cCCCHHHHHHHHh
Confidence 36677889999999993 46788888888888999999 888877776553 432 1 22 212111
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
....+|+|+-. .+. ..+....+.|+++|++++
T Consensus 213 ~~~g~D~vid~-----~g~----~~~~~~~~~l~~~G~iv~ 244 (343)
T 3gaz_A 213 AGQGFDLVYDT-----LGG----PVLDASFSAVKRFGHVVS 244 (343)
T ss_dssp TTSCEEEEEES-----SCT----HHHHHHHHHEEEEEEEEE
T ss_pred cCCCceEEEEC-----CCc----HHHHHHHHHHhcCCeEEE
Confidence 23479998864 321 356677788999999986
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.054 Score=46.31 Aligned_cols=91 Identities=22% Similarity=0.304 Sum_probs=64.3
Q ss_pred cCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---------C
Q 024096 30 ARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---------K 98 (272)
Q Consensus 30 l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---------~ 98 (272)
..+.++++||-.|+ |.|..+..+++..+++|++++.++...+.+++. |.. .++ |..+.. .
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----ga~---~~~--d~~~~~~~~~~~~~~~ 232 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL----GAD---ETV--NYTHPDWPKEVRRLTG 232 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EEE--ETTSTTHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CCC---EEE--cCCcccHHHHHHHHhC
Confidence 46789999999998 578888888887788999999999888877642 421 222 322211 1
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
...+|+|+..-. . ..++.+.+.|+++|++++
T Consensus 233 ~~~~d~vi~~~g-~--------~~~~~~~~~l~~~G~~v~ 263 (343)
T 2eih_A 233 GKGADKVVDHTG-A--------LYFEGVIKATANGGRIAI 263 (343)
T ss_dssp TTCEEEEEESSC-S--------SSHHHHHHHEEEEEEEEE
T ss_pred CCCceEEEECCC-H--------HHHHHHHHhhccCCEEEE
Confidence 247999987543 1 245667788999999886
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.059 Score=46.33 Aligned_cols=96 Identities=24% Similarity=0.229 Sum_probs=63.8
Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-------CC
Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-------PK 98 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-------~~ 98 (272)
+..++.++++||-.|+ |.|..+..+++..+++|++++.+++..+.+++. |.. .++..+-.+. ..
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~ 228 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL----GAA---AGFNYKKEDFSEATLKFTK 228 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCc---EEEecCChHHHHHHHHHhc
Confidence 4567889999999983 567777777777788999999999888777443 321 2222111111 01
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
...+|+|+.+-. .. .+....+.|+++|++++.
T Consensus 229 ~~~~d~vi~~~G-----~~----~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 229 GAGVNLILDCIG-----GS----YWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp TSCEEEEEESSC-----GG----GHHHHHHHEEEEEEEEEC
T ss_pred CCCceEEEECCC-----ch----HHHHHHHhccCCCEEEEE
Confidence 246999986532 11 355667889999999873
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.077 Score=45.10 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=65.0
Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--------
Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------- 97 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------- 97 (272)
+...+.++.+||-.|+ |.|..+..+++..+++|++++.+++..+.+++. |.. .++ |..+..
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----g~~---~~~--d~~~~~~~~~i~~~ 209 (333)
T 1wly_A 139 QTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL----GCH---HTI--NYSTQDFAEVVREI 209 (333)
T ss_dssp TTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EEE--ETTTSCHHHHHHHH
T ss_pred HhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCC---EEE--ECCCHHHHHHHHHH
Confidence 4567889999999994 678888887777788999999999877777542 321 222 222211
Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+.+-.- ..++.+.+.|+++|+++..
T Consensus 210 ~~~~~~d~vi~~~g~---------~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 210 TGGKGVDVVYDSIGK---------DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp HTTCCEEEEEECSCT---------TTHHHHHHTEEEEEEEEEC
T ss_pred hCCCCCeEEEECCcH---------HHHHHHHHhhccCCEEEEE
Confidence 12469999865321 3456777899999998863
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.092 Score=44.78 Aligned_cols=101 Identities=23% Similarity=0.269 Sum_probs=67.7
Q ss_pred HHHHHHcCCCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----
Q 024096 24 SVLIEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---- 97 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---- 97 (272)
-.+.......++++||=.|+|. |.++..+++..++ .++++|.+++..+.+++. |. ..++..+-.+.+
T Consensus 150 ~~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l----Ga---~~~i~~~~~~~~~~~~ 222 (346)
T 4a2c_A 150 LHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF----GA---MQTFNSSEMSAPQMQS 222 (346)
T ss_dssp HHHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC---SEEEETTTSCHHHHHH
T ss_pred HHHHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc----CC---eEEEeCCCCCHHHHHH
Confidence 4456777888999999999984 5566777777554 678999999888877654 43 233322211111
Q ss_pred ---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 ---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+-. .+. ...++.+.+.|+++|++++.
T Consensus 223 ~~~~~~g~d~v~d~-----~G~---~~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 223 VLRELRFNQLILET-----AGV---PQTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp HHGGGCSSEEEEEC-----SCS---HHHHHHHHHHCCTTCEEEEC
T ss_pred hhcccCCccccccc-----ccc---cchhhhhhheecCCeEEEEE
Confidence 23457877753 221 35677788899999999874
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.093 Score=44.36 Aligned_cols=96 Identities=24% Similarity=0.280 Sum_probs=64.1
Q ss_pred HHHHcCCCCCCEEEEEC-CC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CC-CCCC
Q 024096 26 LIEKARVSKGQEVLDIG-CG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-LP-KANK 101 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG-~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-~~-~~~~ 101 (272)
.++...+++|++||=+| +| .|..+..+++..+++|++++ ++...+.+++ .|.. .++..+-.+ .. ....
T Consensus 144 al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~g 215 (321)
T 3tqh_A 144 ALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKA----LGAE---QCINYHEEDFLLAISTP 215 (321)
T ss_dssp HHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHH----HTCS---EEEETTTSCHHHHCCSC
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHH----cCCC---EEEeCCCcchhhhhccC
Confidence 34777889999999996 55 68888888888889999997 5544555544 3542 233222121 11 2257
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+|+|+-. .+. ..+....+.|+++|+++.
T Consensus 216 ~D~v~d~-----~g~----~~~~~~~~~l~~~G~iv~ 243 (321)
T 3tqh_A 216 VDAVIDL-----VGG----DVGIQSIDCLKETGCIVS 243 (321)
T ss_dssp EEEEEES-----SCH----HHHHHHGGGEEEEEEEEE
T ss_pred CCEEEEC-----CCc----HHHHHHHHhccCCCEEEE
Confidence 8988853 332 223778899999999986
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.022 Score=49.15 Aligned_cols=94 Identities=21% Similarity=0.267 Sum_probs=63.6
Q ss_pred HHcCCCCC------CEEEEECCC-chHHH-HHHH-HccCCE-EEEEcCCHH---HHHHHHHHHHHcCCCCCeEEEEcccC
Q 024096 28 EKARVSKG------QEVLDIGCG-WGTLA-IEIV-KQTGCK-YTGITLSEE---QLKYAEIKVREAGLQDHIRFYLCDYR 94 (272)
Q Consensus 28 ~~l~~~~~------~~vLDiG~G-~G~~~-~~l~-~~~~~~-v~gvd~s~~---~~~~a~~~~~~~g~~~~i~~~~~d~~ 94 (272)
+...+++| ++||-+|+| .|.++ ..++ +..+++ |++++.+++ ..+.+++ .|. ..+ |..
T Consensus 160 ~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa----~~v--~~~ 229 (357)
T 2b5w_A 160 EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDA----TYV--DSR 229 (357)
T ss_dssp HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTC----EEE--ETT
T ss_pred HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCC----ccc--CCC
Confidence 55566788 999999986 47777 8888 767776 999999887 6777654 242 222 322
Q ss_pred CCC--C----CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 95 QLP--K----ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 95 ~~~--~----~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+.. . .+.+|+|+-. .+. ...++.+.+.|+++|+++..
T Consensus 230 ~~~~~~i~~~~gg~Dvvid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 230 QTPVEDVPDVYEQMDFIYEA-----TGF---PKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp TSCGGGHHHHSCCEEEEEEC-----SCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred ccCHHHHHHhCCCCCEEEEC-----CCC---hHHHHHHHHHHhcCCEEEEE
Confidence 211 0 1268988753 322 24577788899999999863
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.12 Score=44.35 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=66.9
Q ss_pred HHHHHHHcCCCCC--CEEEEECC--CchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 024096 23 VSVLIEKARVSKG--QEVLDIGC--GWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~--~~vLDiG~--G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272)
+..+.+...+.++ .+||-.|+ |.|..+..+++..|+ +|++++.+++..+.+++. .|.. .++ |..+..
T Consensus 147 ~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~---~~~--d~~~~~ 218 (357)
T 2zb4_A 147 LIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD---AAI--NYKKDN 218 (357)
T ss_dssp HHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS---EEE--ETTTSC
T ss_pred HHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc---eEE--ecCchH
Confidence 3344467788899 99999997 466677777776788 999999998777666542 2321 222 322211
Q ss_pred --------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 --------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 --------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+.+|+|+.+-. ...++.+.+.|+++|++++.
T Consensus 219 ~~~~~~~~~~~~~d~vi~~~G---------~~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 219 VAEQLRESCPAGVDVYFDNVG---------GNISDTVISQMNENSHIILC 259 (357)
T ss_dssp HHHHHHHHCTTCEEEEEESCC---------HHHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCCEEEECCC---------HHHHHHHHHHhccCcEEEEE
Confidence 1126898886432 14567788899999999863
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.12 Score=46.07 Aligned_cols=94 Identities=18% Similarity=0.243 Sum_probs=65.7
Q ss_pred cCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-----------
Q 024096 30 ARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL----------- 96 (272)
Q Consensus 30 l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----------- 96 (272)
..+++|++||=+|+ |.|..+..+++..|+++++++.++...+.+++. |.. .++...-.+.
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~d~~~~~~~~~~~~ 296 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAM----GAE---AIIDRNAEGYRFWKDENTQDP 296 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCC---EEEETTTTTCCSEEETTEECH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhh----CCc---EEEecCcCcccccccccccch
Confidence 56789999999997 467888888888889999999999888887653 432 2222111111
Q ss_pred -------------CCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 97 -------------PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 97 -------------~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.....+|+|+-. .+. ..+....+.|+++|++++.
T Consensus 297 ~~~~~~~~~i~~~t~g~g~Dvvid~-----~G~----~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 297 KEWKRFGKRIRELTGGEDIDIVFEH-----PGR----ETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEEC-----SCH----HHHHHHHHHEEEEEEEEES
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEc-----CCc----hhHHHHHHHhhCCcEEEEE
Confidence 022579988853 321 4567778899999999873
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0032 Score=54.12 Aligned_cols=94 Identities=21% Similarity=0.202 Sum_probs=62.9
Q ss_pred HcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------CCC
Q 024096 29 KARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------KAN 100 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------~~~ 100 (272)
..++ +|++||-+|+| .|..+..+++..++ +|++++.+++..+.+++. . + .++..+-.++. ...
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l---a---~--~v~~~~~~~~~~~~~~~~~~ 230 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY---A---D--RLVNPLEEDLLEVVRRVTGS 230 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT---C---S--EEECTTTSCHHHHHHHHHSS
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh---H---H--hccCcCccCHHHHHHHhcCC
Confidence 6677 99999999986 36777888877788 899999998877766542 1 1 12211111110 024
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+|+|+-. .+. ...++...+.|+++|++++.
T Consensus 231 g~D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 231 GVEVLLEF-----SGN---EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp CEEEEEEC-----SCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEEC-----CCC---HHHHHHHHHHHhcCCEEEEE
Confidence 68999864 221 24567788899999998863
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.072 Score=45.42 Aligned_cols=72 Identities=8% Similarity=0.051 Sum_probs=55.0
Q ss_pred CCEEEEECCCchHHHHHHHHccC---CEE-EEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC----CCCccEEE
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTG---CKY-TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK----ANKYDRII 106 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~---~~v-~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~----~~~fD~V~ 106 (272)
..+++|+.||.|+++.-+.+. | ..+ .++|+++...+..+.+.. .. ++++|+.++.. ...+|+++
T Consensus 10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~-----~~--~~~~DI~~~~~~~i~~~~~Dil~ 81 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFK-----EE--VQVKNLDSISIKQIESLNCNTWF 81 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHC-----CC--CBCCCTTTCCHHHHHHTCCCEEE
T ss_pred CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCC-----CC--cccCChhhcCHHHhccCCCCEEE
Confidence 469999999999999988886 4 356 799999998888877752 12 57789888862 23689999
Q ss_pred Eechhhcc
Q 024096 107 SCGMIEHV 114 (272)
Q Consensus 107 ~~~~~~~~ 114 (272)
.......+
T Consensus 82 ggpPCQ~f 89 (327)
T 3qv2_A 82 MSPPCQPY 89 (327)
T ss_dssp ECCCCTTC
T ss_pred ecCCccCc
Confidence 87664444
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.025 Score=48.09 Aligned_cols=96 Identities=18% Similarity=0.301 Sum_probs=62.6
Q ss_pred HHcCCCCCC-EEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-cc-CC-CC--CC
Q 024096 28 EKARVSKGQ-EVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-DY-RQ-LP--KA 99 (272)
Q Consensus 28 ~~l~~~~~~-~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d~-~~-~~--~~ 99 (272)
++..+.++. +||-+|+ |.|..+..+++..+++|++++.+++..+.+++ .|.. .++.. +. .+ .. ..
T Consensus 142 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~~~ 214 (328)
T 1xa0_A 142 EEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGAK---EVLAREDVMAERIRPLDK 214 (328)
T ss_dssp HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTCS---EEEECC---------CCS
T ss_pred hhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCCc---EEEecCCcHHHHHHHhcC
Confidence 445677875 8999997 57788888888778899999998877777654 3432 12211 11 01 11 22
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+|+|+-. .+. ..+....+.|+++|++++.
T Consensus 215 ~~~d~vid~-----~g~----~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 215 QRWAAAVDP-----VGG----RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp CCEEEEEEC-----STT----TTHHHHHHTEEEEEEEEEC
T ss_pred CcccEEEEC-----CcH----HHHHHHHHhhccCCEEEEE
Confidence 468988754 221 2356677889999999863
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.014 Score=55.08 Aligned_cols=131 Identities=16% Similarity=0.178 Sum_probs=72.9
Q ss_pred cccCCCCCCHHHHHHHHHH--HHHHHcC--CCCCCEEEEECCCchHHHHHHHHc--------c-----CCEEEEEcC---
Q 024096 6 AIFKSEHEDLEVGQMRKVS--VLIEKAR--VSKGQEVLDIGCGWGTLAIEIVKQ--------T-----GCKYTGITL--- 65 (272)
Q Consensus 6 ~~~~~~~~~l~~aq~~~~~--~l~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~--------~-----~~~v~gvd~--- 65 (272)
.||...+ .+.+++.-.+. .+-++.. ..+.-+|+|+|.|+|.....+.+. + ..+++.+|.
T Consensus 27 ~y~s~~~-~~~e~~~~f~~~~~l~~~~~~~~~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~ 105 (689)
T 3pvc_A 27 IYFSNED-GLEETHHVFLKGNGFPARFASHPQQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPL 105 (689)
T ss_dssp --CCSTT-SHHHHHHHTTTTTTTTHHHHHCCSSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCC
T ss_pred cccCCcC-HHHhhHhhccccCCHHHHHhhCCCCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCC
Confidence 3444443 57666553331 1111111 234569999999999977665442 1 157999999
Q ss_pred CHHHHHHHH-----------HHHHHc-----C-----CC---CCeEEEEcccCCCC--C----CCCccEEEEechhhccC
Q 024096 66 SEEQLKYAE-----------IKVREA-----G-----LQ---DHIRFYLCDYRQLP--K----ANKYDRIISCGMIEHVG 115 (272)
Q Consensus 66 s~~~~~~a~-----------~~~~~~-----g-----~~---~~i~~~~~d~~~~~--~----~~~fD~V~~~~~~~~~~ 115 (272)
+...+..+- +.+... | +. -.+++..+|+.+.- . ...+|.++...--....
T Consensus 106 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~n 185 (689)
T 3pvc_A 106 HVADLASAHARWPELASFAEQLRAQWPLPLAGCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKN 185 (689)
T ss_dssp CHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--C
T ss_pred CHHHHHHHHHhCcchhHHHHHHHHhCcccCCCceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCC
Confidence 444443321 112111 1 01 14567888875432 1 46899999865221110
Q ss_pred hh-hHHHHHHHHHhcCccCcEEE
Q 024096 116 HD-YMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 116 ~~-~~~~~l~~~~~~LkpgG~l~ 137 (272)
++ =...++..+.++++|||.+.
T Consensus 186 p~~w~~~~~~~l~~~~~~g~~~~ 208 (689)
T 3pvc_A 186 PDMWNEQLFNAMARMTRPGGTFS 208 (689)
T ss_dssp CTTCSHHHHHHHHHHEEEEEEEE
T ss_pred hhhhhHHHHHHHHHHhCCCCEEE
Confidence 00 01678999999999999876
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.12 Score=43.46 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=55.2
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCE---EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----CCCccE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCK---YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK-----ANKYDR 104 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~---v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~-----~~~fD~ 104 (272)
..+.+++|+-||.|+++.-+.+. |.+ +.++|+++..++..+.+. +...+..+|+.++.. ...+|+
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~------~~~~~~~~DI~~i~~~~i~~~~~~Dl 86 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH------QGKIMYVGDVRSVTQKHIQEWGPFDL 86 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT------TTCEEEECCGGGCCHHHHHHTCCCSE
T ss_pred CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC------CCCceeCCChHHccHHHhcccCCcCE
Confidence 45679999999999999988876 433 589999998877666553 234688999988861 146999
Q ss_pred EEEechhh
Q 024096 105 IISCGMIE 112 (272)
Q Consensus 105 V~~~~~~~ 112 (272)
++......
T Consensus 87 l~ggpPCQ 94 (295)
T 2qrv_A 87 VIGGSPCN 94 (295)
T ss_dssp EEECCCCG
T ss_pred EEecCCCc
Confidence 99876433
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.026 Score=48.04 Aligned_cols=96 Identities=20% Similarity=0.278 Sum_probs=64.1
Q ss_pred HHcCCCCCC-EEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-cc--CCCC--CC
Q 024096 28 EKARVSKGQ-EVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-DY--RQLP--KA 99 (272)
Q Consensus 28 ~~l~~~~~~-~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d~--~~~~--~~ 99 (272)
++..+.++. +||-.|+ |.|..+..+++..++++++++.+++..+.+++. |.. .++.. +. .... ..
T Consensus 143 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~l----Ga~---~v~~~~~~~~~~~~~~~~ 215 (330)
T 1tt7_A 143 EQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GAS---EVISREDVYDGTLKALSK 215 (330)
T ss_dssp HHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCS---EEEEHHHHCSSCCCSSCC
T ss_pred HhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCc---EEEECCCchHHHHHHhhc
Confidence 445677875 8999997 477788888887788999999988777777643 432 22221 11 1111 23
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+|+|+-. .+. ..+....+.|+++|++++.
T Consensus 216 ~~~d~vid~-----~g~----~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 216 QQWQGAVDP-----VGG----KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp CCEEEEEES-----CCT----HHHHHHHTTEEEEEEEEEC
T ss_pred CCccEEEEC-----CcH----HHHHHHHHhhcCCCEEEEE
Confidence 468988754 332 2567788899999999863
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.22 Score=42.99 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=60.6
Q ss_pred CCCCEEEEECC-C-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------CCCCccE
Q 024096 33 SKGQEVLDIGC-G-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------KANKYDR 104 (272)
Q Consensus 33 ~~~~~vLDiG~-G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------~~~~fD~ 104 (272)
.+|.+||=+|+ | .|..+..+++..|++|+++. ++...+.+++ .|.. .++...-.+.. ..+.+|+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~t~g~~d~ 234 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKS----RGAE---EVFDYRAPNLAQTIRTYTKNNLRY 234 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH----TTCS---EEEETTSTTHHHHHHHHTTTCCCE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHH----cCCc---EEEECCCchHHHHHHHHccCCccE
Confidence 78999999998 3 78899999988888999885 7776666654 3532 33322211111 1245999
Q ss_pred EEEechhhccChhhHHHHHHHHHhcC-ccCcEEEEE
Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLL-ATHGLLVLQ 139 (272)
Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~i~ 139 (272)
|+-. .+. ...++.+.+.| +++|+++..
T Consensus 235 v~d~-----~g~---~~~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 235 ALDC-----ITN---VESTTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp EEES-----SCS---HHHHHHHHHHSCTTCEEEEES
T ss_pred EEEC-----CCc---hHHHHHHHHHhhcCCCEEEEE
Confidence 8853 322 34566677778 699999863
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.1 Score=45.05 Aligned_cols=92 Identities=24% Similarity=0.278 Sum_probs=61.2
Q ss_pred HcCCC--C-------CCEEEEECCC-chHHHHHHHHccCCEEEEEcCCH---HHHHHHHHHHHHcCCCCCeEEEEcccCC
Q 024096 29 KARVS--K-------GQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSE---EQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272)
Q Consensus 29 ~l~~~--~-------~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~---~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272)
...++ + |++||-+|+| .|..+..+++..|++|++++.++ +..+.+++. |. ..+ | .+
T Consensus 166 ~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~----ga----~~v--~-~~ 234 (366)
T 2cdc_A 166 QKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEET----KT----NYY--N-SS 234 (366)
T ss_dssp GGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHH----TC----EEE--E-CT
T ss_pred ccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHh----CC----cee--c-hH
Confidence 55677 7 9999999985 35566666766788999999987 666666543 32 222 2 22
Q ss_pred -CCC-----CCCccEEEEechhhccChhhHHHHH-HHHHhcCccCcEEEEE
Q 024096 96 -LPK-----ANKYDRIISCGMIEHVGHDYMEEFF-GCCESLLATHGLLVLQ 139 (272)
Q Consensus 96 -~~~-----~~~fD~V~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~i~ 139 (272)
... ...+|+|+..-. . ...+ +.+.+.|+++|++++.
T Consensus 235 ~~~~~~~~~~~~~d~vid~~g-----~---~~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 235 NGYDKLKDSVGKFDVIIDATG-----A---DVNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp TCSHHHHHHHCCEEEEEECCC-----C---CTHHHHHHGGGEEEEEEEEEC
T ss_pred HHHHHHHHhCCCCCEEEECCC-----C---hHHHHHHHHHHHhcCCEEEEE
Confidence 110 146899986432 1 1245 7788999999998863
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.71 E-value=0.054 Score=45.40 Aligned_cols=93 Identities=18% Similarity=0.146 Sum_probs=62.5
Q ss_pred HcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-CCCC-CCCCccE
Q 024096 29 KARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY-RQLP-KANKYDR 104 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~-~~~~-~~~~fD~ 104 (272)
.. +++|++||-+|+ |.|..+..+++..+++|++++.+++..+.+++ .|.. .++..+- .+.. .-..+|+
T Consensus 121 ~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~~d~ 192 (302)
T 1iz0_A 121 AQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAWGGLDL 192 (302)
T ss_dssp TT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHTTSEEE
T ss_pred hc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHhcCceE
Confidence 44 789999999997 46778888887778899999998887777654 3431 2222111 1111 1156899
Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
|+. -.- ..++...+.|+++|+++..
T Consensus 193 vid-~g~---------~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 193 VLE-VRG---------KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp EEE-CSC---------TTHHHHHTTEEEEEEEEEC
T ss_pred EEE-CCH---------HHHHHHHHhhccCCEEEEE
Confidence 886 321 2456678899999998863
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.12 Score=45.66 Aligned_cols=92 Identities=13% Similarity=0.183 Sum_probs=62.4
Q ss_pred CCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEe
Q 024096 35 GQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIISC 108 (272)
Q Consensus 35 ~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~~ 108 (272)
..+|+=+|+|. |..........+..|+++|.++..++.++.. .+.++.+|..+.. .....|+|++.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~--------g~~vi~GDat~~~~L~~agi~~A~~viv~ 75 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLINA 75 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT--------TCCCEESCTTCHHHHHHTTTTTCSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC--------CCeEEEcCCCCHHHHHhcCCCccCEEEEC
Confidence 45799999874 3222222222578999999999998877642 4678999988754 34678998874
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+++......+....+.+.|...+++.
T Consensus 76 -----~~~~~~n~~i~~~ar~~~p~~~Iiar 101 (413)
T 3l9w_A 76 -----IDDPQTNLQLTEMVKEHFPHLQIIAR 101 (413)
T ss_dssp -----CSSHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred -----CCChHHHHHHHHHHHHhCCCCeEEEE
Confidence 33333455566667777888887763
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.21 Score=38.30 Aligned_cols=91 Identities=16% Similarity=0.069 Sum_probs=54.0
Q ss_pred CCEEEEECCCc-hHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----C--CCCccEEE
Q 024096 35 GQEVLDIGCGW-GTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----K--ANKYDRII 106 (272)
Q Consensus 35 ~~~vLDiG~G~-G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~--~~~fD~V~ 106 (272)
+.+|+=+|+|. |.......... +.+|+++|.+++..+.+++ . .+.++.+|..+.. . ...+|+|+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~----g~~~~~gd~~~~~~l~~~~~~~~ad~vi 110 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----E----GRNVISGDATDPDFWERILDTGHVKLVL 110 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----T----TCCEEECCTTCHHHHHTBCSCCCCCEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----C----CCCEEEcCCCCHHHHHhccCCCCCCEEE
Confidence 56899999874 33222222235 7899999999987766543 2 3456777765422 1 35689988
Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
..- ++......+-...+.+.|++.++.
T Consensus 111 ~~~-----~~~~~~~~~~~~~~~~~~~~~ii~ 137 (183)
T 3c85_A 111 LAM-----PHHQGNQTALEQLQRRNYKGQIAA 137 (183)
T ss_dssp ECC-----SSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EeC-----CChHHHHHHHHHHHHHCCCCEEEE
Confidence 742 212222233334555677777765
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.15 Score=47.89 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=74.4
Q ss_pred ccCCCCCCHHHHHHHHHH--HHHHHcC--CCCCCEEEEECCCchHHHHHHHHc-----------c--CCEEEEEcC---C
Q 024096 7 IFKSEHEDLEVGQMRKVS--VLIEKAR--VSKGQEVLDIGCGWGTLAIEIVKQ-----------T--GCKYTGITL---S 66 (272)
Q Consensus 7 ~~~~~~~~l~~aq~~~~~--~l~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~-----------~--~~~v~gvd~---s 66 (272)
||+..+ .+.+++.-.+. .+-++.. ..+.-+|||+|-|+|.+.....+. . ..+++++|. +
T Consensus 36 y~s~~~-~~~e~~~vf~~~~~l~~~~~~~~~~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~ 114 (676)
T 3ps9_A 36 YFSNDN-GLEETRYVFLGGNQLEVRFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLT 114 (676)
T ss_dssp SSCTTT-HHHHHHHHTTGGGTHHHHGGGCSSSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCC
T ss_pred ccCCcC-HHHhhHhhhhccCChhHHHHhCCCCceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCC
Confidence 444333 56666554442 2333332 234469999999999876655432 1 146899999 6
Q ss_pred HHHHHHHHH-----------HHHHcCC--C-----------CCeEEEEcccCCCC------CCCCccEEEEechhhccCh
Q 024096 67 EEQLKYAEI-----------KVREAGL--Q-----------DHIRFYLCDYRQLP------KANKYDRIISCGMIEHVGH 116 (272)
Q Consensus 67 ~~~~~~a~~-----------~~~~~g~--~-----------~~i~~~~~d~~~~~------~~~~fD~V~~~~~~~~~~~ 116 (272)
++.+..+-. ....... + -.++...+|+.+.- ....||+|+...--....+
T Consensus 115 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np 194 (676)
T 3ps9_A 115 RADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNP 194 (676)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCG
T ss_pred HHHHHHHHHhChhhHHHHHHHHHhCcccCCCceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCCh
Confidence 666653322 2221110 0 12456667765422 1367999998652221111
Q ss_pred hh-HHHHHHHHHhcCccCcEEE
Q 024096 117 DY-MEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 117 ~~-~~~~l~~~~~~LkpgG~l~ 137 (272)
+- -..+++.+.++++|||.+.
T Consensus 195 ~~w~~~~~~~l~~~~~~g~~~~ 216 (676)
T 3ps9_A 195 DMWTQNLFNAMARLARPGGTLA 216 (676)
T ss_dssp GGSCHHHHHHHHHHEEEEEEEE
T ss_pred hhhhHHHHHHHHHHhCCCCEEE
Confidence 10 1678999999999999876
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=1.8 Score=40.63 Aligned_cols=158 Identities=10% Similarity=0.168 Sum_probs=97.1
Q ss_pred CCCEEEEECCCchHHHHHHHHc-c--------CCEEEEEcCCHHHHHHHHHHHHHcC--------------C--------
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-T--------GCKYTGITLSEEQLKYAEIKVREAG--------------L-------- 82 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~--------~~~v~gvd~s~~~~~~a~~~~~~~g--------------~-------- 82 (272)
+...|+-+|||.=.....|... + +.+++=+|. |+.++.=++.+...+ .
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 4578999999988888887654 2 445666664 666666555554221 0
Q ss_pred -CCCeEEEEcccCCCC------------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccc
Q 024096 83 -QDHIRFYLCDYRQLP------------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYD 149 (272)
Q Consensus 83 -~~~i~~~~~d~~~~~------------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 149 (272)
.++.+.+.+|+.+.. ..+.--++++..++.+++.+....+++.+.+. +++.+++-+...+.....
T Consensus 186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e~~~~~~~~d 263 (695)
T 2zwa_A 186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILEQLIPKGPFE 263 (695)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEEECCTTCTTS
T ss_pred cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEEeecCCCCCC
Confidence 037889999998742 11334578888999999999999999999864 677777656554432111
Q ss_pred cccC-cchhhhhcccC---CCCCCCHHHHHHHhhcCCCcEEEEEEecCcc
Q 024096 150 EYRL-SPGFIKEYIFP---GGCLPSLGRVTSAMTSSSGLCVEHLENIGIH 195 (272)
Q Consensus 150 ~~~~-~~~~~~~~~~p---~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~ 195 (272)
.+.. ....+...-.| -..+++.++..+.+. ++||..+...++..-
T Consensus 264 ~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~-~~Gw~~v~~~~~~~~ 312 (695)
T 2zwa_A 264 PFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFN-KLGFAYVNVGDMFQL 312 (695)
T ss_dssp HHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHH-HTTCCEEEEEEHHHH
T ss_pred hHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHH-HCCCCCcceeeHHHH
Confidence 1110 01111111011 123467777776655 599987777766543
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.19 Score=42.59 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=53.1
Q ss_pred CEEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEechhh
Q 024096 36 QEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGMIE 112 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~~~ 112 (272)
++|||+-||.|+++.-+.+. |. .+.++|+++..++.-+.+. .-.++.+|+.++. .-...|+++......
T Consensus 1 mkvidLFsG~GG~~~G~~~a-G~~~v~a~e~d~~a~~ty~~N~-------~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ 72 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-------SAKLIKGDISKISSDEFPKCDGIIGGPPSQ 72 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT-TCEEEEEEECCTTTHHHHHHHC-------CSEEEESCGGGCCGGGSCCCSEEECCCCGG
T ss_pred CeEEEeCcCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-------CCCcccCChhhCCHhhCCcccEEEecCCCC
Confidence 47999999999999888776 54 4669999998777766652 2367889999887 235789998876444
Q ss_pred c
Q 024096 113 H 113 (272)
Q Consensus 113 ~ 113 (272)
.
T Consensus 73 ~ 73 (331)
T 3ubt_Y 73 S 73 (331)
T ss_dssp G
T ss_pred C
Confidence 3
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.054 Score=46.63 Aligned_cols=100 Identities=22% Similarity=0.265 Sum_probs=63.6
Q ss_pred HHHHcCCC-CCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-ccCCCC-CCCC
Q 024096 26 LIEKARVS-KGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-DYRQLP-KANK 101 (272)
Q Consensus 26 l~~~l~~~-~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~~~-~~~~ 101 (272)
.+....+. +|++||-+|+| .|..+..+++..+++|++++.+++..+.+++ ..|.. .++.. +...+. ..+.
T Consensus 171 ~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~---~lGa~---~vi~~~~~~~~~~~~~g 244 (357)
T 2cf5_A 171 PLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQ---DLGAD---DYVIGSDQAKMSELADS 244 (357)
T ss_dssp HHHHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHT---TSCCS---CEEETTCHHHHHHSTTT
T ss_pred HHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH---HcCCc---eeeccccHHHHHHhcCC
Confidence 34556777 99999999987 4667777887778899999998876666552 23432 12211 111111 1246
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|+|+-.-.-. ..++...+.|+++|+++..
T Consensus 245 ~D~vid~~g~~--------~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 245 LDYVIDTVPVH--------HALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp EEEEEECCCSC--------CCSHHHHTTEEEEEEEEEC
T ss_pred CCEEEECCCCh--------HHHHHHHHHhccCCEEEEe
Confidence 89988643211 2344566789999999863
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.25 Score=43.60 Aligned_cols=45 Identities=22% Similarity=0.280 Sum_probs=36.4
Q ss_pred CCEEEEECCCchHHHHHHHHc---c---CCEEEEEcCCHHHHHHHHHHHHH
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ---T---GCKYTGITLSEEQLKYAEIKVRE 79 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~---~---~~~v~gvd~s~~~~~~a~~~~~~ 79 (272)
..+|+|+|.|+|.++..+.+. . ..+++.||+|+...+.-++++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 469999999999988877653 1 24899999999988887777764
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.071 Score=45.58 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=53.2
Q ss_pred CEEEEECCCchHHHHHHHHccC---CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEEEe
Q 024096 36 QEVLDIGCGWGTLAIEIVKQTG---CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRIISC 108 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~~~---~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V~~~ 108 (272)
.+++|+-||.|+++.-+.+. | ..+.++|+++...+..+.|.. ...+..+|+.++. +...+|+++..
T Consensus 4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~~~~~D~l~gg 76 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIKKWNVDTILMS 76 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhccCCCCEEEec
Confidence 48999999999999988876 4 357899999988877776642 3457788998876 12368999977
Q ss_pred chhh
Q 024096 109 GMIE 112 (272)
Q Consensus 109 ~~~~ 112 (272)
....
T Consensus 77 pPCQ 80 (333)
T 4h0n_A 77 PPCQ 80 (333)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6443
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.25 Score=42.73 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=59.3
Q ss_pred CCCCCEEEEEC-CC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEE
Q 024096 32 VSKGQEVLDIG-CG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRI 105 (272)
Q Consensus 32 ~~~~~~vLDiG-~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V 105 (272)
+.+|++||-.| +| .|..+..+++..+++|++++ ++...+.++ ..|.. .++..+-.+.. ....+|+|
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~----~lGa~---~v~~~~~~~~~~~~~~~~g~D~v 252 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVR----KLGAD---DVIDYKSGSVEEQLKSLKPFDFI 252 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHH----HTTCS---EEEETTSSCHHHHHHTSCCBSEE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHH----HcCCC---EEEECCchHHHHHHhhcCCCCEE
Confidence 78899999999 34 67788888887788999998 665555553 33432 22222111111 22469998
Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+-.- +.. ...+....+.|+++|+++.
T Consensus 253 id~~-----g~~--~~~~~~~~~~l~~~G~iv~ 278 (375)
T 2vn8_A 253 LDNV-----GGS--TETWAPDFLKKWSGATYVT 278 (375)
T ss_dssp EESS-----CTT--HHHHGGGGBCSSSCCEEEE
T ss_pred EECC-----CCh--hhhhHHHHHhhcCCcEEEE
Confidence 8642 211 1345667789999999986
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=94.24 E-value=0.049 Score=48.45 Aligned_cols=97 Identities=22% Similarity=0.224 Sum_probs=64.3
Q ss_pred cCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC------------
Q 024096 30 ARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ------------ 95 (272)
Q Consensus 30 l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~------------ 95 (272)
..+.+|++||-.|+ |.|..+..+++..++++++++.+++..+.+++ .|...-+.....|+.+
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~~ 291 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVET 291 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccchh
Confidence 57889999999996 46778888888788999999999988877754 3432111111111100
Q ss_pred -------CC--CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 96 -------LP--KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 96 -------~~--~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+. ....+|+|+-. .+. ..++...+.|+++|++++.
T Consensus 292 ~~~~~~~v~~~~g~g~Dvvid~-----~G~----~~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 292 GRKLAKLVVEKAGREPDIVFEH-----TGR----VTFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHHHHSSCCSEEEEC-----SCH----HHHHHHHHHSCTTCEEEES
T ss_pred hhHHHHHHHHHhCCCceEEEEC-----CCc----hHHHHHHHHHhcCCEEEEE
Confidence 00 12468999864 321 3466777889999999873
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.34 Score=35.26 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=54.4
Q ss_pred CCEEEEECCCc-hH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEE
Q 024096 35 GQEVLDIGCGW-GT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIIS 107 (272)
Q Consensus 35 ~~~vLDiG~G~-G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~ 107 (272)
..+|+=+|+|. |. ++..|.+ .+.+|+++|.+++.++.+++. .+.++.+|..+.. ....+|.|+.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~-~g~~V~~id~~~~~~~~~~~~--------~~~~~~gd~~~~~~l~~~~~~~~d~vi~ 76 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTA-AGKKVLAVDKSKEKIELLEDE--------GFDAVIADPTDESFYRSLDLEGVSAVLI 76 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHT--------TCEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCeEEEEECCHHHHHHHHHC--------CCcEEECCCCCHHHHHhCCcccCCEEEE
Confidence 45799999974 22 2233333 478999999999877666542 4678889987643 2357898887
Q ss_pred echhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 108 CGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
... +......+....+.+. ..+++.
T Consensus 77 ~~~-----~~~~n~~~~~~a~~~~-~~~iia 101 (141)
T 3llv_A 77 TGS-----DDEFNLKILKALRSVS-DVYAIV 101 (141)
T ss_dssp CCS-----CHHHHHHHHHHHHHHC-CCCEEE
T ss_pred ecC-----CHHHHHHHHHHHHHhC-CceEEE
Confidence 532 2222333444444445 555554
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.45 Score=41.26 Aligned_cols=98 Identities=10% Similarity=0.100 Sum_probs=68.3
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEcccCCCCCCCCccEEEEechhh
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD-HIRFYLCDYRQLPKANKYDRIISCGMIE 112 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~-~i~~~~~d~~~~~~~~~fD~V~~~~~~~ 112 (272)
.+.+||.++.+.|.++..++.. + ++.+.=|-......+.|+..++++. ++++... ... ....+|+|+.... .
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~-~--~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~--~~~~~~~v~~~lp-k 110 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH-K--PYSIGDSYISELATRENLRLNGIDESSVKFLDS-TAD--YPQQPGVVLIKVP-K 110 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG-C--CEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSC--CCSSCSEEEEECC-S
T ss_pred CCCCEEEECCCCCHHHHhhccC-C--ceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-ccc--cccCCCEEEEEcC-C
Confidence 5568999999999999888754 3 3444336666667788888888854 3565433 222 2368999987533 2
Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+. ......+..+...|+||+.+++..
T Consensus 111 ~~--~~l~~~L~~l~~~l~~~~~i~~~g 136 (375)
T 4dcm_A 111 TL--ALLEQQLRALRKVVTSDTRIIAGA 136 (375)
T ss_dssp CH--HHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred CH--HHHHHHHHHHHhhCCCCCEEEEEe
Confidence 22 455678889999999999988644
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.025 Score=47.49 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=40.9
Q ss_pred CCeEEEEcccCCC-C--CCCCccEEEEechhhccCh------------------hhHHHHHHHHHhcCccCcEEEEE
Q 024096 84 DHIRFYLCDYRQL-P--KANKYDRIISCGMIEHVGH------------------DYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 84 ~~i~~~~~d~~~~-~--~~~~fD~V~~~~~~~~~~~------------------~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.++.++++|..+. . ++++||+|+++.......+ ..+..+++++.++|||||.+++.
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~ 96 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV 96 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3678999998773 3 4679999999987642210 11345788999999999999885
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.12 Score=44.64 Aligned_cols=100 Identities=25% Similarity=0.272 Sum_probs=62.7
Q ss_pred HHHHcCCC-CCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-cCCCC-CCCC
Q 024096 26 LIEKARVS-KGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD-YRQLP-KANK 101 (272)
Q Consensus 26 l~~~l~~~-~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d-~~~~~-~~~~ 101 (272)
.+....+. +|++||-+|+| .|..+..+++..+++|++++.++...+.+++ ..|.. .++..+ ...+. ..+.
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~---~lGa~---~v~~~~~~~~~~~~~~~ 251 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALK---NFGAD---SFLVSRDQEQMQAAAGT 251 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHH---TSCCS---EEEETTCHHHHHHTTTC
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---hcCCc---eEEeccCHHHHHHhhCC
Confidence 34556777 89999999987 3667777777778899999998877666542 22421 222111 10111 1246
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|+|+..-... ..++...+.|+++|+++..
T Consensus 252 ~D~vid~~g~~--------~~~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 252 LDGIIDTVSAV--------HPLLPLFGLLKSHGKLILV 281 (366)
T ss_dssp EEEEEECCSSC--------CCSHHHHHHEEEEEEEEEC
T ss_pred CCEEEECCCcH--------HHHHHHHHHHhcCCEEEEE
Confidence 99998653221 1234456778999998863
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.14 Score=38.41 Aligned_cols=112 Identities=16% Similarity=0.095 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC
Q 024096 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272)
Q Consensus 17 ~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272)
.+|+.-+++++++....+| -|||+|-|+|..=.+|.+. ++.+|+.+|-.-.. .- . -.|+.-.++.+|+.+
T Consensus 24 taQR~~L~~a~~~v~~~~G-pVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~------hp-~-~~P~~e~~ilGdi~~ 94 (174)
T 3iht_A 24 VSQRACLEHAIAQTAGLSG-PVYELGLGNGRTYHHLRQHVQGREIYVFERAVAS------HP-D-STPPEAQLILGDIRE 94 (174)
T ss_dssp HHHHHHHHHHHHHTTTCCS-CEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCC------CG-G-GCCCGGGEEESCHHH
T ss_pred HHHHHHHHHHHHHhcCCCC-ceEEecCCCChhHHHHHHhCCCCcEEEEEeeecc------CC-C-CCCchHheecccHHH
Confidence 5788888999999886666 6999999999999999998 88999999952100 00 0 012233556666554
Q ss_pred CC-C-----CCCccEEEEechhhccChhh---HHHHHHHHHhcCccCcEEEE
Q 024096 96 LP-K-----ANKYDRIISCGMIEHVGHDY---MEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 96 ~~-~-----~~~fD~V~~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~i 138 (272)
.- . ..+.-++......++- +++ ...+-.-+..+|.|||.++-
T Consensus 95 tL~~~~~r~g~~a~LaHaD~G~g~~-~~d~a~a~~lsplI~~~la~GGi~vS 145 (174)
T 3iht_A 95 TLPATLERFGATASLVHADLGGHNR-EKNDRFARLISPLIEPHLAQGGLMVS 145 (174)
T ss_dssp HHHHHHHHHCSCEEEEEECCCCSCH-HHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHhcCCceEEEEeecCCCCc-chhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 32 1 2233333333222221 111 12233446789999998874
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.21 Score=42.89 Aligned_cols=95 Identities=17% Similarity=0.229 Sum_probs=57.3
Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEE-cCCHH---HHHHHHHHHHHcCCCCCeEEEEc------ccCC
Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGI-TLSEE---QLKYAEIKVREAGLQDHIRFYLC------DYRQ 95 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gv-d~s~~---~~~~a~~~~~~~g~~~~i~~~~~------d~~~ 95 (272)
+...+.+|++||-+|+ |.|..+..+++..|++++++ +.++. ..+.+ +..|.. .++.. ++.+
T Consensus 161 ~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~----~~lGa~---~vi~~~~~~~~~~~~ 233 (357)
T 1zsy_A 161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRL----KSLGAE---HVITEEELRRPEMKN 233 (357)
T ss_dssp HSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHH----HHTTCS---EEEEHHHHHSGGGGG
T ss_pred HHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHH----HhcCCc---EEEecCcchHHHHHH
Confidence 3457889999999996 47888889998778876655 44332 23333 334532 22221 1222
Q ss_pred CCCC-CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 96 LPKA-NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 96 ~~~~-~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.... ..+|+|+-. .+.. .. ....+.|+++|++++
T Consensus 234 ~~~~~~~~Dvvid~-----~g~~---~~-~~~~~~l~~~G~iv~ 268 (357)
T 1zsy_A 234 FFKDMPQPRLALNC-----VGGK---SS-TELLRQLARGGTMVT 268 (357)
T ss_dssp TTSSSCCCSEEEES-----SCHH---HH-HHHHTTSCTTCEEEE
T ss_pred HHhCCCCceEEEEC-----CCcH---HH-HHHHHhhCCCCEEEE
Confidence 2111 248998753 3322 22 356789999999986
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=93.17 E-value=1.6 Score=31.09 Aligned_cols=90 Identities=13% Similarity=0.089 Sum_probs=52.4
Q ss_pred CCEEEEECCCchH--HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEE
Q 024096 35 GQEVLDIGCGWGT--LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIIS 107 (272)
Q Consensus 35 ~~~vLDiG~G~G~--~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~ 107 (272)
+++|+=+|+|.=+ ++..|.+ .+.+|+++|.++...+..++. . .+.++.+|..+.. ....+|+|+.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~-~g~~v~~~d~~~~~~~~~~~~---~----~~~~~~~d~~~~~~l~~~~~~~~d~vi~ 75 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSE-KGHDIVLIDIDKDICKKASAE---I----DALVINGDCTKIKTLEDAGIEDADMYIA 75 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHH---C----SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHh---c----CcEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence 4689999886422 2223333 478999999998766554432 1 3466777765432 1357899988
Q ss_pred echhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 108 CGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.-. .......+..+.+.+.++ .+++
T Consensus 76 ~~~-----~~~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 76 VTG-----KEEVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp CCS-----CHHHHHHHHHHHHHTTCC-CEEE
T ss_pred eeC-----CchHHHHHHHHHHHcCCC-EEEE
Confidence 632 222234455555567775 5544
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.96 E-value=1.1 Score=35.21 Aligned_cols=88 Identities=16% Similarity=0.006 Sum_probs=57.3
Q ss_pred EEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEe
Q 024096 37 EVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIISC 108 (272)
Q Consensus 37 ~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~~ 108 (272)
+|+=+|+ |..+..+++. .+.+|+.+|.+++.++...+. ..+.++.+|..+.. .-..+|+|++.
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~-------~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 72 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK-------LKATIIHGDGSHKEILRDAEVSKNDVVVIL 72 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH-------SSSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-------cCCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence 5777776 4455544443 478999999999877664432 14678999987643 23678999875
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.+++.....+....+.+.|...++.
T Consensus 73 -----~~~d~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 73 -----TPRDEVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp -----CSCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred -----cCCcHHHHHHHHHHHHHcCCCeEEE
Confidence 2333334556666666667766664
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=92.93 E-value=1.4 Score=35.85 Aligned_cols=92 Identities=11% Similarity=0.095 Sum_probs=58.4
Q ss_pred CEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhh
Q 024096 36 QEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIE 112 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~ 112 (272)
++||=.|+ |.++..+++. .+.+|++++-++........ .+++++.+|+.++. ...+|+|+......
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~-~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS-LDGVTHLLISTAPD 74 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC-CTTCCEEEECCCCB
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEecccccc-cCCCCEEEECCCcc
Confidence 68999995 7777776654 47899999988755433321 36899999998876 56789998876544
Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.........+++.+.+.-..-.++++
T Consensus 75 ~~~~~~~~~l~~a~~~~~~~~~~~v~ 100 (286)
T 3ius_A 75 SGGDPVLAALGDQIAARAAQFRWVGY 100 (286)
T ss_dssp TTBCHHHHHHHHHHHHTGGGCSEEEE
T ss_pred ccccHHHHHHHHHHHhhcCCceEEEE
Confidence 33222223444444432122245554
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=92.59 E-value=1.1 Score=33.10 Aligned_cols=92 Identities=20% Similarity=0.200 Sum_probs=57.6
Q ss_pred CCEEEEECCCchHHHHHHHHc---cCCEEEEEcCC-HHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEE
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLS-EEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRI 105 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s-~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V 105 (272)
..+|+=+|+| ..+..+++. .+.+|+.+|.+ ++..+...... +..+.++.+|..+.. .-+..|+|
T Consensus 3 ~~~vlI~G~G--~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a~i~~ad~v 75 (153)
T 1id1_A 3 KDHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKAGIDRCRAI 75 (153)
T ss_dssp CSCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred CCcEEEECCC--HHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHcChhhCCEE
Confidence 4578888875 444444433 47899999997 45444433321 135789999986643 24678998
Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
++.. ++......+....+.+.|..+++.
T Consensus 76 i~~~-----~~d~~n~~~~~~a~~~~~~~~ii~ 103 (153)
T 1id1_A 76 LALS-----DNDADNAFVVLSAKDMSSDVKTVL 103 (153)
T ss_dssp EECS-----SCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred EEec-----CChHHHHHHHHHHHHHCCCCEEEE
Confidence 8753 223345556666666777777765
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.58 E-value=2.1 Score=34.91 Aligned_cols=103 Identities=16% Similarity=0.200 Sum_probs=67.7
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCC------------HHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLS------------EEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s------------~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 98 (272)
.+.+||=.|++.|. ++..|+++ |++|+.+|.+ ....+.+...+...+ .++.++.+|+.+...
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~ 85 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEE-GADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAA 85 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC-CCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHH
Confidence 46789988887653 44455554 8999999987 666666665555544 478999999877540
Q ss_pred -----------CCCccEEEEechhhc----cChhhHHH-----------HHHHHHhcCccCcEEEEE
Q 024096 99 -----------ANKYDRIISCGMIEH----VGHDYMEE-----------FFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 -----------~~~fD~V~~~~~~~~----~~~~~~~~-----------~l~~~~~~LkpgG~l~i~ 139 (272)
-++.|+++.+..+.. .+.+++.. +.+.+...|+.+|.++..
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 152 (287)
T 3pxx_A 86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT 152 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence 137899998765432 22233322 445566777788887764
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=92.46 E-value=0.25 Score=36.79 Aligned_cols=94 Identities=15% Similarity=0.177 Sum_probs=53.2
Q ss_pred CCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---C--CCCccEEE
Q 024096 33 SKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---K--ANKYDRII 106 (272)
Q Consensus 33 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~--~~~fD~V~ 106 (272)
.++.+|+=+|+|. |......+...+.+|+++|.++...+.++. . ....++.+|..+.. . ...+|+|+
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~----~g~~~~~~d~~~~~~l~~~~~~~ad~Vi 89 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---E----FSGFTVVGDAAEFETLKECGMEKADMVF 89 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---T----CCSEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---c----CCCcEEEecCCCHHHHHHcCcccCCEEE
Confidence 4678999999874 332222222357899999998865443321 1 13456667754422 1 24689988
Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
..-. .......+..+.+.+.+...++.
T Consensus 90 ~~~~-----~~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 90 AFTN-----DDSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp ECSS-----CHHHHHHHHHHHHHTSCCSEEEE
T ss_pred EEeC-----CcHHHHHHHHHHHHHCCCCeEEE
Confidence 7532 22233444445555555555554
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.2 Score=42.75 Aligned_cols=97 Identities=12% Similarity=0.160 Sum_probs=60.1
Q ss_pred HHHHcCCCCC-CEEEEE-CCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----
Q 024096 26 LIEKARVSKG-QEVLDI-GCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----- 97 (272)
Q Consensus 26 l~~~l~~~~~-~~vLDi-G~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----- 97 (272)
+++... .++ .+||=. |+| .|..+..+++..|++|++++.+++..+.+++. |.. .++..+-.+..
T Consensus 156 ~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~----Ga~---~~~~~~~~~~~~~v~~ 227 (349)
T 3pi7_A 156 MFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDI----GAA---HVLNEKAPDFEATLRE 227 (349)
T ss_dssp HHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHH----TCS---EEEETTSTTHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCC---EEEECCcHHHHHHHHH
Confidence 444444 455 566654 443 56777777877788999999999888877653 421 23322211111
Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+-. .+. ..+..+.+.|+++|++++.
T Consensus 228 ~~~~~g~D~vid~-----~g~----~~~~~~~~~l~~~G~iv~~ 262 (349)
T 3pi7_A 228 VMKAEQPRIFLDA-----VTG----PLASAIFNAMPKRARWIIY 262 (349)
T ss_dssp HHHHHCCCEEEES-----SCH----HHHHHHHHHSCTTCEEEEC
T ss_pred HhcCCCCcEEEEC-----CCC----hhHHHHHhhhcCCCEEEEE
Confidence 11369999864 222 2236677889999999873
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=92.13 E-value=2.7 Score=34.72 Aligned_cols=104 Identities=17% Similarity=0.124 Sum_probs=67.3
Q ss_pred CCCCEEEEECCCc----hH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----------
Q 024096 33 SKGQEVLDIGCGW----GT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---------- 97 (272)
Q Consensus 33 ~~~~~vLDiG~G~----G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---------- 97 (272)
-.++++|=.|++. |. ++..+++. |++|+.++.++...+.+.+.....+ ++.++.+|+.+..
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~ 104 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREA-GAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLE 104 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHT-TCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHH
Confidence 4577999999663 32 45556664 8899999998766666555555443 6889999987754
Q ss_pred -CCCCccEEEEechhhc----------cChhhHH-----------HHHHHHHhcCccCcEEEEEe
Q 024096 98 -KANKYDRIISCGMIEH----------VGHDYME-----------EFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~----------~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~ 140 (272)
.-++.|+++.+..+.. .+.+++. .+.+.+...|+.+|+++...
T Consensus 105 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 105 KKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp HHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred HhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 1147899998765432 2222222 24455566777788887643
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.48 Score=42.66 Aligned_cols=88 Identities=16% Similarity=0.173 Sum_probs=55.5
Q ss_pred CCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEech
Q 024096 32 VSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGM 110 (272)
Q Consensus 32 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~ 110 (272)
..+|++|+=+|+|. |......++..|.+|+++|.++...+.+++ .|. .+ .++.+. -...|+|+..-.
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~----~Ga----~~--~~l~e~--l~~aDvVi~atg 338 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMM----EGF----DV--VTVEEA--IGDADIVVTATG 338 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTC----EE--CCHHHH--GGGCSEEEECSS
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC----EE--ecHHHH--HhCCCEEEECCC
Confidence 56889999999973 444444444478899999999987666543 232 22 232222 146799988643
Q ss_pred hhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 111 IEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
-.++ +-.+..+.||+||+++.
T Consensus 339 t~~~-------i~~~~l~~mk~ggilvn 359 (494)
T 3ce6_A 339 NKDI-------IMLEHIKAMKDHAILGN 359 (494)
T ss_dssp SSCS-------BCHHHHHHSCTTCEEEE
T ss_pred CHHH-------HHHHHHHhcCCCcEEEE
Confidence 2232 11245566899999875
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=91.88 E-value=2 Score=34.72 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=67.9
Q ss_pred CCCEEEEECCC----chH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC----------
Q 024096 34 KGQEVLDIGCG----WGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK---------- 98 (272)
Q Consensus 34 ~~~~vLDiG~G----~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~---------- 98 (272)
.+.++|=.|++ .|. ++..|+++ |++|+.++.++...+.+.+.....+- .++.++.+|+.+...
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEA-GARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKE 83 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC-CCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHH
Confidence 46789999865 332 45556664 88999998887665666555554432 268999999987640
Q ss_pred -CCCccEEEEechhhc----------cChhhHH-----------HHHHHHHhcCccCcEEEEEe
Q 024096 99 -ANKYDRIISCGMIEH----------VGHDYME-----------EFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 99 -~~~fD~V~~~~~~~~----------~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~ 140 (272)
-+..|.++.+..+.. .+.++.. .+.+.+...++++|+++...
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 137898888754432 2222222 24556677788888887643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.34 E-value=0.14 Score=43.55 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=42.3
Q ss_pred CCeEEEEcccCC-CC--CCCCccEEEEechhhccCh------------hhHHHHHHHHHhcCccCcEEEEEe
Q 024096 84 DHIRFYLCDYRQ-LP--KANKYDRIISCGMIEHVGH------------DYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 84 ~~i~~~~~d~~~-~~--~~~~fD~V~~~~~~~~~~~------------~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+...++++|..+ +. ++++||+|++......... ......++++.++|+|||.+++..
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~ 84 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 84 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEE
Confidence 367889999765 33 5678999999876543210 235678899999999999999853
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=91.28 E-value=0.22 Score=42.73 Aligned_cols=97 Identities=18% Similarity=0.245 Sum_probs=57.9
Q ss_pred cCCCCC-CEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc---CCCC------
Q 024096 30 ARVSKG-QEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY---RQLP------ 97 (272)
Q Consensus 30 l~~~~~-~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~---~~~~------ 97 (272)
..+++| ++||-.|+ |.|..+..+++..+++++++..+++..+..++.++..|.. .++..+- .++.
T Consensus 162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~~i~~~ 238 (364)
T 1gu7_A 162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGPTIKEW 238 (364)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHHHHHHH
T ss_pred hccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCe---EEEecCccchHHHHHHHHHH
Confidence 468899 99999986 4777888888877889888865443311111222333532 2222110 1111
Q ss_pred ---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 98 ---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 98 ---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
....+|+|+-. .+.. ... ...+.|+++|+++.
T Consensus 239 t~~~~~g~Dvvid~-----~G~~---~~~-~~~~~l~~~G~~v~ 273 (364)
T 1gu7_A 239 IKQSGGEAKLALNC-----VGGK---SST-GIARKLNNNGLMLT 273 (364)
T ss_dssp HHHHTCCEEEEEES-----SCHH---HHH-HHHHTSCTTCEEEE
T ss_pred hhccCCCceEEEEC-----CCch---hHH-HHHHHhccCCEEEE
Confidence 12468998853 3322 223 56789999999986
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.92 E-value=0.48 Score=40.44 Aligned_cols=95 Identities=21% Similarity=0.265 Sum_probs=57.7
Q ss_pred HHHHcCCCCCCEEEEECC--CchHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----
Q 024096 26 LIEKARVSKGQEVLDIGC--GWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----- 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----- 97 (272)
+.+...+++|++||=.|+ +.|..+..+++.. +.+|++++ ++...+.++ .|.. .++. +-.+..
T Consensus 134 l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~ga~---~~~~-~~~~~~~~~~~ 203 (349)
T 4a27_A 134 LFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DSVT---HLFD-RNADYVQEVKR 203 (349)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GGSS---EEEE-TTSCHHHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cCCc---EEEc-CCccHHHHHHH
Confidence 345567889999999998 3677888888774 57899988 554444433 2331 2332 111111
Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+.+|+|+-. .+.+ .+..+.+.|+++|++++.
T Consensus 204 ~~~~g~Dvv~d~-----~g~~----~~~~~~~~l~~~G~~v~~ 237 (349)
T 4a27_A 204 ISAEGVDIVLDC-----LCGD----NTGKGLSLLKPLGTYILY 237 (349)
T ss_dssp HCTTCEEEEEEE-----CC-----------CTTEEEEEEEEEE
T ss_pred hcCCCceEEEEC-----CCch----hHHHHHHHhhcCCEEEEE
Confidence 23579999864 2221 236678999999999874
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=90.90 E-value=1.3 Score=35.84 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=65.2
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----------C
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK-----------A 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~-----------~ 99 (272)
.++++|=.|++.|. ++..|+++ |++|+.++.++...+...+.+ + .++.++.+|+.+... -
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEG-GAEVLLTGRNESNIARIREEF---G--PRVHALRSDIADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence 56789988876653 44445554 889999999987766655443 2 478999999877541 1
Q ss_pred CCccEEEEechhhc------cChhhHHH-----------HHHHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGMIEH------VGHDYMEE-----------FFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~~~~------~~~~~~~~-----------~l~~~~~~LkpgG~l~i~ 139 (272)
+..|+++.+..+.. .+.+++.. +.+.+...++++|+++..
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i 137 (255)
T 4eso_A 81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT 137 (255)
T ss_dssp SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 37899888754322 23333322 345556667778887764
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=90.73 E-value=3.3 Score=34.11 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=64.6
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHH-HHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------C
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEE-QLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------K 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~-~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~ 98 (272)
.++++|=.|++.|. ++..|+++ |++|+.++.++. ..+...+.++..+ .++.++.+|+.+.. .
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKE-GANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789988876653 44445554 889999988754 3444444444443 47899999987753 0
Q ss_pred CCCccEEEEechhh-------ccChhhHHH-----------HHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIE-------HVGHDYMEE-----------FFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~-------~~~~~~~~~-----------~l~~~~~~LkpgG~l~i~ 139 (272)
-+..|+++.+.... .++.+++.. +.+.+...|+.+|+++..
T Consensus 123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence 13789998874332 123233322 455666777888887763
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.72 E-value=1.2 Score=36.16 Aligned_cols=105 Identities=11% Similarity=0.094 Sum_probs=65.5
Q ss_pred CCCCCEEEEECCC-chH----HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---------
Q 024096 32 VSKGQEVLDIGCG-WGT----LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--------- 97 (272)
Q Consensus 32 ~~~~~~vLDiG~G-~G~----~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--------- 97 (272)
..++.+||=.|++ +|+ ++..|+++ +++|+.++.+....+.+++.....+ ++.++.+|+.+..
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~ 86 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKRE-GAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASL 86 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHc-CCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHH
Confidence 3467899999964 233 34444554 8899999888655555555544443 5788999987754
Q ss_pred --CCCCccEEEEechhhc-----------cChhhHHH-----------HHHHHHhcCccCcEEEEEe
Q 024096 98 --KANKYDRIISCGMIEH-----------VGHDYMEE-----------FFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~-----------~~~~~~~~-----------~l~~~~~~LkpgG~l~i~~ 140 (272)
.-++.|+++.+..+.. .+.+++.. +.+.+...++++|++++..
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 87 KTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp HHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 1147899998765432 33333322 3455566677788877643
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=90.56 E-value=0.21 Score=44.82 Aligned_cols=76 Identities=9% Similarity=0.044 Sum_probs=53.7
Q ss_pred CCEEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC---------------
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK--------------- 98 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~--------------- 98 (272)
..+++|+-||.|+++.-+.+. |. .+.++|+++..++.-+.+.. ..+...++++|+.++..
T Consensus 88 ~~~viDLFaG~GGlslG~~~a-G~~~v~avE~d~~A~~ty~~N~~---~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i 163 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI-GGQCVFTSEWNKHAVRTYKANHY---CDPATHHFNEDIRDITLSHQEGVSDEAAAEHI 163 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT-TEEEEEEECCCHHHHHHHHHHSC---CCTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHhcc---cCCCcceeccchhhhhhccccccchhhHHhhh
Confidence 468999999999999988776 54 47899999987776665531 11234667788766531
Q ss_pred ---CCCccEEEEechhhcc
Q 024096 99 ---ANKYDRIISCGMIEHV 114 (272)
Q Consensus 99 ---~~~fD~V~~~~~~~~~ 114 (272)
...+|+|+.......+
T Consensus 164 ~~~~~~~Dvl~gGpPCQ~F 182 (482)
T 3me5_A 164 RQHIPEHDVLLAGFPCQPF 182 (482)
T ss_dssp HHHSCCCSEEEEECCCCCC
T ss_pred hhcCCCCCEEEecCCCcch
Confidence 1368999887655443
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=90.46 E-value=1.9 Score=35.10 Aligned_cols=75 Identities=16% Similarity=0.105 Sum_probs=56.1
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.|+++|=-|++.|. .+..+++. |++|+..|.+++..+...+.+...+ .++.++.+|+.+.. .-
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~-Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAA-GARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAEG 84 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 57788888877663 44555654 8999999999998888777777766 47889999987643 23
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
++.|+++.+-.+
T Consensus 85 G~iDiLVNNAG~ 96 (255)
T 4g81_D 85 IHVDILINNAGI 96 (255)
T ss_dssp CCCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 678999887543
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=90.33 E-value=0.19 Score=43.35 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=56.0
Q ss_pred CCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh
Q 024096 34 KGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272)
Q Consensus 34 ~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272)
++.+|+=+|+|. |.....++...|++|+++|.++...+.+.+.... .+.....+..++. .-..+|+|+..-..
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~DvVI~~~~~ 240 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVLV 240 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHHcCCCEEEECCCc
Confidence 348999999973 3344444544688999999999887777654321 2222222211111 11368999875443
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.... .+.-+.+...+.|+|||+++.
T Consensus 241 ~~~~--~~~li~~~~~~~~~~g~~ivd 265 (361)
T 1pjc_A 241 PGRR--APILVPASLVEQMRTGSVIVD 265 (361)
T ss_dssp TTSS--CCCCBCHHHHTTSCTTCEEEE
T ss_pred CCCC--CCeecCHHHHhhCCCCCEEEE
Confidence 2210 000113345677899998775
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=90.31 E-value=0.19 Score=43.69 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=55.1
Q ss_pred CCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh
Q 024096 34 KGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272)
Q Consensus 34 ~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272)
++.+|+=+|+|. |.....+++..|++|+++|.++...+.+++.. |. .+.....+..++. .-...|+|+..-..
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~~~~~l~~~l~~aDvVi~~~~~ 241 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF---CG--RIHTRYSSAYELEGAVKRADLVIGAVLV 241 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc---CC--eeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence 578999999973 33444444447889999999998777665432 21 2222111111111 11357999874322
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
... +...-+.++..+.|||||+++.
T Consensus 242 p~~--~t~~li~~~~l~~mk~g~~iV~ 266 (377)
T 2vhw_A 242 PGA--KAPKLVSNSLVAHMKPGAVLVD 266 (377)
T ss_dssp TTS--CCCCCBCHHHHTTSCTTCEEEE
T ss_pred CCC--CCcceecHHHHhcCCCCcEEEE
Confidence 110 0001123456677899998875
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.19 E-value=0.79 Score=39.22 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=61.4
Q ss_pred cCCCCCCEEEEECCC-chHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC------CCCCCCC
Q 024096 30 ARVSKGQEVLDIGCG-WGTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR------QLPKANK 101 (272)
Q Consensus 30 l~~~~~~~vLDiG~G-~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~------~~~~~~~ 101 (272)
..+++|++||-+|+| .|..+..+++.. +++|+++|.+++..+.+++. |.. .++..+-. ++.....
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~v~~~~~g~g 254 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GAD---HVVDARRDPVKQVMELTRGRG 254 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TCS---EEEETTSCHHHHHHHHTTTCC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCC---EEEeccchHHHHHHHHhCCCC
Confidence 678899999999986 456777788776 99999999999888877642 431 22322111 1112237
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|+|+-. .+... ...++...+. ++|++++.
T Consensus 255 ~Dvvid~-----~G~~~-~~~~~~~~~~--~~G~~v~~ 284 (359)
T 1h2b_A 255 VNVAMDF-----VGSQA-TVDYTPYLLG--RMGRLIIV 284 (359)
T ss_dssp EEEEEES-----SCCHH-HHHHGGGGEE--EEEEEEEC
T ss_pred CcEEEEC-----CCCch-HHHHHHHhhc--CCCEEEEE
Confidence 9999854 32210 1155556666 99998863
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=90.05 E-value=2.8 Score=35.23 Aligned_cols=88 Identities=17% Similarity=0.141 Sum_probs=56.8
Q ss_pred CCEEEEECCCch--HHHHHHHHccCC--EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CCCCCCccEEEEec
Q 024096 35 GQEVLDIGCGWG--TLAIEIVKQTGC--KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-LPKANKYDRIISCG 109 (272)
Q Consensus 35 ~~~vLDiG~G~G--~~~~~l~~~~~~--~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-~~~~~~fD~V~~~~ 109 (272)
..+|.=||+|.= .++..+.+. +. +|+++|.+++.++.+.+ .|.. .-...|..+ .. ...|+|+..
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~-G~~~~V~~~dr~~~~~~~a~~----~G~~---~~~~~~~~~~~~--~~aDvVila- 101 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVD----LGII---DEGTTSIAKVED--FSPDFVMLS- 101 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHH----TTSC---SEEESCTTGGGG--GCCSEEEEC-
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC-CCCCEEEEEECCHHHHHHHHH----CCCc---chhcCCHHHHhh--ccCCEEEEe-
Confidence 368999999843 344455554 65 99999999987776653 2431 112233333 21 457999875
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
++......+++++...++|+..++
T Consensus 102 ----vp~~~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 102 ----SPVRTFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp ----SCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred ----CCHHHHHHHHHHHhhccCCCcEEE
Confidence 444455778889988898886553
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.03 E-value=0.33 Score=41.93 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=54.0
Q ss_pred CCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh
Q 024096 34 KGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272)
Q Consensus 34 ~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272)
++.+|+=+|+| .|.....++...|++|+++|.++...+.+.+.. +. .+.....+..++. .-..+|+|+..-..
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~~l~~~~~~~DvVi~~~g~ 239 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF---GG--RVITLTATEANIKKSVQHADLLIGAVLV 239 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence 46899999986 233334444446889999999998766654422 22 2222222211111 11357999875433
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
... +...-+.+...+.||+||.++.
T Consensus 240 ~~~--~~~~li~~~~l~~mk~gg~iV~ 264 (369)
T 2eez_A 240 PGA--KAPKLVTRDMLSLMKEGAVIVD 264 (369)
T ss_dssp --------CCSCHHHHTTSCTTCEEEE
T ss_pred Ccc--ccchhHHHHHHHhhcCCCEEEE
Confidence 210 0011124566778899998775
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.83 E-value=5.9 Score=32.18 Aligned_cols=112 Identities=13% Similarity=0.171 Sum_probs=68.8
Q ss_pred HHHHHHcCCCCCCEEEEECCCchH---HHHHHHHccCCEEEEEcC-CHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITL-SEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~-s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272)
+.+...+.+ .++++|=.|++.|. ++..|+++ |++|+.++. +....+...+.++..+ .++.++.+|+.+..
T Consensus 21 ~~mm~~~~l-~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v 96 (271)
T 3v2g_A 21 QSMMTSISL-AGKTAFVTGGSRGIGAAIAKRLALE-GAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAI 96 (271)
T ss_dssp HHHHTTTCC-TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHH
T ss_pred hhhccccCC-CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHH
Confidence 334443343 46789999987653 44555554 889988855 4455555555555544 47899999987754
Q ss_pred ---------CCCCccEEEEechhhc------cChhhHH-----------HHHHHHHhcCccCcEEEEE
Q 024096 98 ---------KANKYDRIISCGMIEH------VGHDYME-----------EFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ---------~~~~fD~V~~~~~~~~------~~~~~~~-----------~~l~~~~~~LkpgG~l~i~ 139 (272)
.-++.|+++.+..+.. .+.+++. .+++.+...|+++|+++..
T Consensus 97 ~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i 164 (271)
T 3v2g_A 97 EQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI 164 (271)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 0137899998754322 2222222 2455566777888888764
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=89.69 E-value=0.11 Score=45.14 Aligned_cols=42 Identities=29% Similarity=0.359 Sum_probs=32.5
Q ss_pred CCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHH
Q 024096 34 KGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEI 75 (272)
Q Consensus 34 ~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~ 75 (272)
++.+|+=+|+|. |..+..++...|++|+++|.++...+.+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 678999999994 445555555578999999999987776654
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=89.53 E-value=2.3 Score=34.23 Aligned_cols=103 Identities=16% Similarity=0.071 Sum_probs=63.1
Q ss_pred CCCEEEEECCCchHHHHHH----HHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----------
Q 024096 34 KGQEVLDIGCGWGTLAIEI----VKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK----------- 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l----~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~----------- 98 (272)
.+.+||=.|+. |.++..+ ++..+.+|+.++.++...+...+.+...+ .++.++.+|+.+...
T Consensus 3 ~~k~vlITGas-ggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (276)
T 1wma_A 3 GIHVALVTGGN-KGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE 79 (276)
T ss_dssp CCCEEEESSCS-SHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence 45678877754 4444444 44137899999999877766666665544 468899999877530
Q ss_pred CCCccEEEEechhhccC------hhhHH-----------HHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHVG------HDYME-----------EFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~------~~~~~-----------~~l~~~~~~LkpgG~l~i~ 139 (272)
-+.+|+|+.+....... .++.. .+++.+...++++|++++.
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~ 137 (276)
T 1wma_A 80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 137 (276)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEE
Confidence 12789998765432211 12221 2445556666667777763
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=89.33 E-value=3.8 Score=33.76 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=65.4
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCC--HHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLS--EEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----------- 97 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s--~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----------- 97 (272)
.++++|=.|++.|. ++..|+++ |++|+.++.+ +...+...+.++..+ .++.++.+|+.+..
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 124 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYARE-GADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE 124 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 46789988876553 44445554 8899998876 344555555555544 47899999987753
Q ss_pred CCCCccEEEEechhhc-------cChhhHH-----------HHHHHHHhcCccCcEEEEE
Q 024096 98 KANKYDRIISCGMIEH-------VGHDYME-----------EFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~-------~~~~~~~-----------~~l~~~~~~LkpgG~l~i~ 139 (272)
.-+..|+++.+..... ++.+++. .+.+.+...++++|+++..
T Consensus 125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~i 184 (294)
T 3r3s_A 125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITT 184 (294)
T ss_dssp HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence 0147899988765422 2222222 2455566778888888764
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=89.30 E-value=2.3 Score=34.34 Aligned_cols=103 Identities=12% Similarity=0.098 Sum_probs=64.4
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEE-cCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----------
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGI-TLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK----------- 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gv-d~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~----------- 98 (272)
.+.++|=.|++.|. ++..|+++ |++|+.+ +.++...+...+.+...+ .++.++.+|+.+...
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQE-GANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADK 83 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46789988887663 44555554 8899887 666666665555555444 478999999877540
Q ss_pred CCCccEEEEechhh-------ccChhhHH-----------HHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIE-------HVGHDYME-----------EFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~-------~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~ 139 (272)
-++.|+++.+.... ..+.+++. .+.+.+...|+++|+++..
T Consensus 84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~i 142 (259)
T 3edm_A 84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTF 142 (259)
T ss_dssp HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 13789998765432 22222222 2344555667777887763
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=89.19 E-value=4 Score=33.11 Aligned_cols=105 Identities=20% Similarity=0.227 Sum_probs=66.0
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcC-CHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----------
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITL-SEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK----------- 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~-s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~----------- 98 (272)
.+.++|=.|++.|. ++..|++. |++|+.++. ++...+...+.+...+ .++.++.+|+.+...
T Consensus 17 ~~k~~lVTGas~gIG~aia~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 93 (270)
T 3is3_A 17 DGKVALVTGSGRGIGAAVAVHLGRL-GAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVAH 93 (270)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788888876553 44445554 889988765 4555555555555544 478999999887540
Q ss_pred CCCccEEEEechhhc------cChhhHHH-----------HHHHHHhcCccCcEEEEEee
Q 024096 99 ANKYDRIISCGMIEH------VGHDYMEE-----------FFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~------~~~~~~~~-----------~l~~~~~~LkpgG~l~i~~~ 141 (272)
-++.|+++.+..+.. .+.+++.. +.+.+...|+++|++++...
T Consensus 94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 136899887654432 22233222 44566677788888876433
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=89.13 E-value=2.7 Score=34.23 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=56.8
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.|+.+|=-|.+.|. .+..+++. |++|+.+|.+++..+...+.++..| .++.++.+|+.+.. .-
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~-Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALN-DSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 47788888887774 45556664 8999999999998888888887766 47899999997754 12
Q ss_pred CCccEEEEech
Q 024096 100 NKYDRIISCGM 110 (272)
Q Consensus 100 ~~fD~V~~~~~ 110 (272)
++.|+++.+-.
T Consensus 83 G~iDiLVNNAG 93 (254)
T 4fn4_A 83 SRIDVLCNNAG 93 (254)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCc
Confidence 57899988653
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=88.85 E-value=2.1 Score=36.14 Aligned_cols=88 Identities=9% Similarity=-0.001 Sum_probs=59.5
Q ss_pred CCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEE
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRII 106 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~ 106 (272)
..+|+=+|+ |..+..+++. .+. ++.+|.+++.++ +++ ..+.++.+|..+.. .-+.+|.|+
T Consensus 115 ~~~viI~G~--G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~--------~~~~~i~gd~~~~~~L~~a~i~~a~~vi 182 (336)
T 1lnq_A 115 SRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKK-VLR--------SGANFVHGDPTRVSDLEKANVRGARAVI 182 (336)
T ss_dssp -CEEEEESC--CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH--------TTCEEEESCTTSHHHHHHTCSTTEEEEE
T ss_pred cCCEEEECC--cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh--------CCcEEEEeCCCCHHHHHhcChhhccEEE
Confidence 458888887 5566666654 356 999999998777 543 25789999987654 246789888
Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+.. ++++..-......+.+.|..+++..
T Consensus 183 ~~~-----~~d~~n~~~~~~ar~~~~~~~iiar 210 (336)
T 1lnq_A 183 VDL-----ESDSETIHCILGIRKIDESVRIIAE 210 (336)
T ss_dssp ECC-----SSHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred EcC-----CccHHHHHHHHHHHHHCCCCeEEEE
Confidence 742 3233344555566777888777763
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=88.76 E-value=1.8 Score=34.37 Aligned_cols=88 Identities=10% Similarity=0.019 Sum_probs=57.2
Q ss_pred CCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEE
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRI 105 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V 105 (272)
...+|+=+|+| ..+..+++. .+. |+++|.+++.++.++ . .+.++.+|..+.. .-...|.|
T Consensus 8 ~~~~viI~G~G--~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-----~----~~~~i~gd~~~~~~l~~a~i~~ad~v 75 (234)
T 2aef_A 8 KSRHVVICGWS--ESTLECLRELRGSEV-FVLAEDENVRKKVLR-----S----GANFVHGDPTRVSDLEKANVRGARAV 75 (234)
T ss_dssp --CEEEEESCC--HHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-----T----TCEEEESCTTCHHHHHHTTCTTCSEE
T ss_pred CCCEEEEECCC--hHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-----c----CCeEEEcCCCCHHHHHhcCcchhcEE
Confidence 45689999885 555555554 356 999999987665543 1 4788999987643 23678998
Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
++.. +++.....+....+.+.|+..++.
T Consensus 76 i~~~-----~~d~~n~~~~~~a~~~~~~~~iia 103 (234)
T 2aef_A 76 IVDL-----ESDSETIHCILGIRKIDESVRIIA 103 (234)
T ss_dssp EECC-----SCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred EEcC-----CCcHHHHHHHHHHHHHCCCCeEEE
Confidence 8752 223334455556666778777765
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.70 E-value=5.2 Score=31.75 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=53.6
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.++++|=.|++.|. ++..|+++ |.+|+.++.++...+...+.++..+ .++.++.+|+.+.. ..
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASK-GATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 35678888866552 44445554 8899999999988877777776655 47899999987743 12
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
++.|+++.+..+
T Consensus 81 ~~id~li~~Ag~ 92 (247)
T 3lyl_A 81 LAIDILVNNAGI 92 (247)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 468999887654
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.31 E-value=0.18 Score=44.16 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=32.6
Q ss_pred CCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHH
Q 024096 34 KGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEI 75 (272)
Q Consensus 34 ~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~ 75 (272)
++.+|+=+|+|. |..+..++...|++|+++|.++...+.+++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 578999999994 445555565578999999999987776654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.19 E-value=3.9 Score=33.64 Aligned_cols=100 Identities=18% Similarity=0.133 Sum_probs=67.1
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.|+.+|=-|++.|. .+..|++. |++|+.++.+++.++.+.+.+ + .+...+.+|+.+.. .-
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~-Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 101 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAE-GARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKAEA 101 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence 57788888987774 45556664 899999999988776554433 3 46788899987753 12
Q ss_pred CCccEEEEechh------hccChhhHHH-----------HHHHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGMI------EHVGHDYMEE-----------FFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~~------~~~~~~~~~~-----------~l~~~~~~LkpgG~l~i~ 139 (272)
++.|+++.+-.+ ..++++++.. ..+.+...|+.+|.++..
T Consensus 102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni 158 (273)
T 4fgs_A 102 GRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT 158 (273)
T ss_dssp SCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred CCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 578988877543 2233344333 445556778888887764
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=88.14 E-value=3.8 Score=33.84 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=65.8
Q ss_pred CCCEEEEECCC----chH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC----------
Q 024096 34 KGQEVLDIGCG----WGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK---------- 98 (272)
Q Consensus 34 ~~~~vLDiG~G----~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~---------- 98 (272)
.+.++|=.|++ .|. ++..|++. |++|+.++.++...+...+.....+ ++.++.+|+.+...
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQ-GAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAE 104 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHH
Confidence 46789999874 332 45555654 8999999998765555555554443 46889999877540
Q ss_pred -CCCccEEEEechhhc----------cChhhHHH-----------HHHHHHhcCccCcEEEEEe
Q 024096 99 -ANKYDRIISCGMIEH----------VGHDYMEE-----------FFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 99 -~~~fD~V~~~~~~~~----------~~~~~~~~-----------~l~~~~~~LkpgG~l~i~~ 140 (272)
-+..|+++.+..+.. .+.+++.. +.+.+...|+.+|+++...
T Consensus 105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is 168 (296)
T 3k31_A 105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS 168 (296)
T ss_dssp HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 147899998765432 22222222 4455566777788887643
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=87.98 E-value=2.1 Score=35.66 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=51.2
Q ss_pred CCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-cccCCCCCCCCccEEEEech
Q 024096 33 SKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL-CDYRQLPKANKYDRIISCGM 110 (272)
Q Consensus 33 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~-~d~~~~~~~~~fD~V~~~~~ 110 (272)
-.+.+|+=+|+|. |......+...+.+|+++|.++...+.+.+ .| +.... .+..+. -...|+|+..-.
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~----~g----~~~~~~~~l~~~--l~~aDvVi~~~p 224 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITE----MG----LVPFHTDELKEH--VKDIDICINTIP 224 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TT----CEEEEGGGHHHH--STTCSEEEECCS
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC----CeEEchhhHHHH--hhCCCEEEECCC
Confidence 3678999999874 332233333368899999999865443322 23 23221 222222 256899998766
Q ss_pred hhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 111 IEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
.+.+. + .....+|||+.++
T Consensus 225 ~~~i~-~-------~~~~~mk~g~~li 243 (300)
T 2rir_A 225 SMILN-Q-------TVLSSMTPKTLIL 243 (300)
T ss_dssp SCCBC-H-------HHHTTSCTTCEEE
T ss_pred hhhhC-H-------HHHHhCCCCCEEE
Confidence 54332 1 2346789988765
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=87.84 E-value=2.5 Score=35.01 Aligned_cols=95 Identities=17% Similarity=0.137 Sum_probs=53.5
Q ss_pred HHHHcC-CCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-cccCCCCCCCCc
Q 024096 26 LIEKAR-VSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL-CDYRQLPKANKY 102 (272)
Q Consensus 26 l~~~l~-~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~-~d~~~~~~~~~f 102 (272)
++.... .-.+.+|+=+|+|. |......+...|.+|+++|.++...+.+. ..| +.... .+..+. -...
T Consensus 145 ~l~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~----~~g----~~~~~~~~l~~~--l~~a 214 (293)
T 3d4o_A 145 AIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA----EMG----MEPFHISKAAQE--LRDV 214 (293)
T ss_dssp HHHHCSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTT----SEEEEGGGHHHH--TTTC
T ss_pred HHHhcCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH----HCC----CeecChhhHHHH--hcCC
Confidence 344433 23678999999874 33333333336889999999986544432 223 23221 122221 2568
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
|+|+..-..+.+. .. ....+|||+.++-
T Consensus 215 DvVi~~~p~~~i~----~~----~l~~mk~~~~lin 242 (293)
T 3d4o_A 215 DVCINTIPALVVT----AN----VLAEMPSHTFVID 242 (293)
T ss_dssp SEEEECCSSCCBC----HH----HHHHSCTTCEEEE
T ss_pred CEEEECCChHHhC----HH----HHHhcCCCCEEEE
Confidence 9999865543332 12 3346789887653
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=87.71 E-value=0.25 Score=43.02 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=31.1
Q ss_pred CCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHH
Q 024096 34 KGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEI 75 (272)
Q Consensus 34 ~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~ 75 (272)
++.+|+=+|+|. |..+..+++..|++|+++|.++...+.+++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES 213 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 688999999984 444555555578899999998866655543
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=87.56 E-value=0.62 Score=50.26 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=66.9
Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc---ccC----CCCC
Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC---DYR----QLPK 98 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~---d~~----~~~~ 98 (272)
+...+++|.+||=.|+ |.|..+..+++..|++|++++.+++..+.+++.....|.. +++.. ++. +...
T Consensus 1661 ~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~---~v~~~~~~~~~~~i~~~t~ 1737 (2512)
T 2vz8_A 1661 VRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDET---CFANSRDTSFEQHVLRHTA 1737 (2512)
T ss_dssp TTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCST---TEEESSSSHHHHHHHHTTT
T ss_pred HHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCce---EEecCCCHHHHHHHHHhcC
Confidence 4456789999999964 5788888999888899999999988777776543222221 12211 111 1112
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
...+|+|+-. .+ ...+....+.|+++|+++.
T Consensus 1738 g~GvDvVld~-----~g----~~~l~~~l~~L~~~Gr~V~ 1768 (2512)
T 2vz8_A 1738 GKGVDLVLNS-----LA----EEKLQASVRCLAQHGRFLE 1768 (2512)
T ss_dssp SCCEEEEEEC-----CC----HHHHHHHHTTEEEEEEEEE
T ss_pred CCCceEEEEC-----CC----chHHHHHHHhcCCCcEEEE
Confidence 3469999863 22 3457888899999999886
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=87.39 E-value=6.4 Score=31.93 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=53.4
Q ss_pred EEEEECCCchH--HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhcc
Q 024096 37 EVLDIGCGWGT--LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHV 114 (272)
Q Consensus 37 ~vLDiG~G~G~--~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~ 114 (272)
+|.=||+|.=+ ++..+.+ .+.+|+++|.+++..+.+.+ .|... . ...|..+. ...|+|+.. +
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~-~g~~V~~~~~~~~~~~~~~~----~g~~~--~-~~~~~~~~---~~~D~vi~a-----v 65 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRR-RGHYLIGVSRQQSTCEKAVE----RQLVD--E-AGQDLSLL---QTAKIIFLC-----T 65 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHH----TTSCS--E-EESCGGGG---TTCSEEEEC-----S
T ss_pred EEEEEcCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHh----CCCCc--c-ccCCHHHh---CCCCEEEEE-----C
Confidence 67889988532 3334444 36799999999887766542 34321 1 12333332 468999875 4
Q ss_pred ChhhHHHHHHHHHhcCccCcEEE
Q 024096 115 GHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 115 ~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
+......+++++...++++..++
T Consensus 66 ~~~~~~~~~~~l~~~~~~~~~vv 88 (279)
T 2f1k_A 66 PIQLILPTLEKLIPHLSPTAIVT 88 (279)
T ss_dssp CHHHHHHHHHHHGGGSCTTCEEE
T ss_pred CHHHHHHHHHHHHhhCCCCCEEE
Confidence 44455778888888888876553
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=87.04 E-value=6.6 Score=31.72 Aligned_cols=72 Identities=14% Similarity=0.216 Sum_probs=49.2
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------CCCCccE
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------KANKYDR 104 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------~~~~fD~ 104 (272)
.|+++|=-|.+.|. .+..|++. |++|+..|.+.. +.+.+.++..+ .++.++.+|+.+.. ...+.|+
T Consensus 8 ~GKvalVTGas~GIG~aiA~~la~~-Ga~Vvi~~r~~~--~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iDi 82 (247)
T 4hp8_A 8 EGRKALVTGANTGLGQAIAVGLAAA-GAEVVCAARRAP--DETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFDI 82 (247)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHc-CCEEEEEeCCcH--HHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCCE
Confidence 47778877877764 45566665 899999998743 23334444545 47889999987654 2367899
Q ss_pred EEEech
Q 024096 105 IISCGM 110 (272)
Q Consensus 105 V~~~~~ 110 (272)
++.+-.
T Consensus 83 LVNNAG 88 (247)
T 4hp8_A 83 LVNNAG 88 (247)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 888754
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=86.99 E-value=8.8 Score=29.46 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=53.6
Q ss_pred CEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEech
Q 024096 36 QEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGM 110 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~ 110 (272)
++||=.|+ +|.++..+++. .+.+|++++-++...... . .+++++.+|+.+.. .-..+|+|+....
T Consensus 1 MkvlVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-------~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag 70 (221)
T 3ew7_A 1 MKIGIIGA-TGRAGSRILEEAKNRGHEVTAIVRNAGKITQT-------H--KDINILQKDIFDLTLSDLSDQNVVVDAYG 70 (221)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCSHHHHHH-------C--SSSEEEECCGGGCCHHHHTTCSEEEECCC
T ss_pred CeEEEEcC-CchhHHHHHHHHHhCCCEEEEEEcCchhhhhc-------c--CCCeEEeccccChhhhhhcCCCEEEECCc
Confidence 36787775 34444444332 478999999887543322 1 36899999998765 2246899998765
Q ss_pred hhccChhhHHHHHHHHHhcCcc--CcEEEEE
Q 024096 111 IEHVGHDYMEEFFGCCESLLAT--HGLLVLQ 139 (272)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~~Lkp--gG~l~i~ 139 (272)
...-..+.......++.+.++. .+++++.
T Consensus 71 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~ 101 (221)
T 3ew7_A 71 ISPDEAEKHVTSLDHLISVLNGTVSPRLLVV 101 (221)
T ss_dssp SSTTTTTSHHHHHHHHHHHHCSCCSSEEEEE
T ss_pred CCccccchHHHHHHHHHHHHHhcCCceEEEE
Confidence 4221111122333444444443 3566653
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=86.85 E-value=2.3 Score=29.21 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=42.4
Q ss_pred CCCEEEEECCCchHHHHHHHHc---cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEE
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ---TG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRI 105 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~---~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V 105 (272)
.+.+|+=+|+| ..+..+++. .+ .+|+++|.++...+... . ..+.+...|..+.. .-..+|+|
T Consensus 4 ~~~~v~I~G~G--~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~~~~~d~v 73 (118)
T 3ic5_A 4 MRWNICVVGAG--KIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDEAGLAKALGGFDAV 73 (118)
T ss_dssp TCEEEEEECCS--HHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCHHHHHHHTTTCSEE
T ss_pred CcCeEEEECCC--HHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCHHHHHHHHcCCCEE
Confidence 35689999995 333333322 36 78999999987666554 1 25677888876533 12467888
Q ss_pred EEec
Q 024096 106 ISCG 109 (272)
Q Consensus 106 ~~~~ 109 (272)
+..-
T Consensus 74 i~~~ 77 (118)
T 3ic5_A 74 ISAA 77 (118)
T ss_dssp EECS
T ss_pred EECC
Confidence 8754
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.29 E-value=3 Score=35.70 Aligned_cols=94 Identities=16% Similarity=0.256 Sum_probs=57.6
Q ss_pred CCEEEEECCCc-hH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH------cCCCCCeEEEEcccCCCCCCCCccEEE
Q 024096 35 GQEVLDIGCGW-GT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVRE------AGLQDHIRFYLCDYRQLPKANKYDRII 106 (272)
Q Consensus 35 ~~~vLDiG~G~-G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~------~g~~~~i~~~~~d~~~~~~~~~fD~V~ 106 (272)
.++|.=||+|. |. ++..+++ .+.+|+.++.+++.++..++.-.. ..++.++.+. .|..+. -...|+|+
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~-~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t-~d~~ea--~~~aDvVi 104 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLAR-KGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAY-CDLKAS--LEGVTDIL 104 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHT-TTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE-SCHHHH--HTTCCEEE
T ss_pred CCeEEEECccHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEE-CCHHHH--HhcCCEEE
Confidence 46899999984 33 4444554 377899999999887766553110 0111223221 222111 14578888
Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
.. ++......+++++...++|+..++
T Consensus 105 la-----Vp~~~~~~vl~~i~~~l~~~~ivv 130 (356)
T 3k96_A 105 IV-----VPSFAFHEVITRMKPLIDAKTRIA 130 (356)
T ss_dssp EC-----CCHHHHHHHHHHHGGGCCTTCEEE
T ss_pred EC-----CCHHHHHHHHHHHHHhcCCCCEEE
Confidence 74 444556888999999998887654
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=86.21 E-value=8 Score=31.60 Aligned_cols=88 Identities=22% Similarity=0.228 Sum_probs=54.1
Q ss_pred CEEEEECCCchH--HHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhh
Q 024096 36 QEVLDIGCGWGT--LAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIE 112 (272)
Q Consensus 36 ~~vLDiG~G~G~--~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~ 112 (272)
.+|.=||+|.=+ ++..+++. .+.+|+++|.++...+.+.+ .|... ....|..+.. ...|+|+..
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~---~~~~~~~~~~--~~aDvVila---- 73 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIVD---EATADFKVFA--ALADVIILA---- 73 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSCS---EEESCTTTTG--GGCSEEEEC----
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCcc---cccCCHHHhh--cCCCEEEEc----
Confidence 579999998533 34445544 36799999999887765543 23211 1222332221 457998875
Q ss_pred ccChhhHHHHHHHHHhc-CccCcEEE
Q 024096 113 HVGHDYMEEFFGCCESL-LATHGLLV 137 (272)
Q Consensus 113 ~~~~~~~~~~l~~~~~~-LkpgG~l~ 137 (272)
++......+++++... ++++..++
T Consensus 74 -vp~~~~~~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 74 -VPIKKTIDFIKILADLDLKEDVIIT 98 (290)
T ss_dssp -SCHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred -CCHHHHHHHHHHHHhcCCCCCCEEE
Confidence 4444446778888877 88775554
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=85.71 E-value=1.3 Score=38.97 Aligned_cols=96 Identities=16% Similarity=0.120 Sum_probs=55.3
Q ss_pred HHHHHHcC-CCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 024096 24 SVLIEKAR-VSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272)
Q Consensus 24 ~~l~~~l~-~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272)
+.+.+..+ .-.|.+|+=+|+|. |......++..|++|+++|.++.....+. ..| ..+ .++.+.- ..
T Consensus 208 ~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~----~~G----~~v--~~Leeal--~~ 275 (435)
T 3gvp_A 208 DGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQAC----MDG----FRL--VKLNEVI--RQ 275 (435)
T ss_dssp HHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH----HTT----CEE--CCHHHHT--TT
T ss_pred HHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHH----HcC----CEe--ccHHHHH--hc
Confidence 34444443 34789999999995 33333344447999999999986444332 222 222 2333322 46
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.|+|+....-.++- -++....||+|+.++-
T Consensus 276 ADIVi~atgt~~lI-------~~e~l~~MK~gailIN 305 (435)
T 3gvp_A 276 VDIVITCTGNKNVV-------TREHLDRMKNSCIVCN 305 (435)
T ss_dssp CSEEEECSSCSCSB-------CHHHHHHSCTTEEEEE
T ss_pred CCEEEECCCCcccC-------CHHHHHhcCCCcEEEE
Confidence 79998853323321 1234556899987764
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=85.66 E-value=2.8 Score=37.32 Aligned_cols=90 Identities=11% Similarity=0.057 Sum_probs=58.5
Q ss_pred CCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEE
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRII 106 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~ 106 (272)
.++|+=+|||. .+..+++. .+..|+.+|.+++.++.+.+.+ .+..++||..+.. .-+..|+++
T Consensus 3 ~M~iiI~G~G~--vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~Agi~~ad~~i 73 (461)
T 4g65_A 3 AMKIIILGAGQ--VGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEAGAQDADMLV 73 (461)
T ss_dssp CEEEEEECCSH--HHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHHTTTTCSEEE
T ss_pred cCEEEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhcCCCcCCEEE
Confidence 57888888873 44445543 3678999999999888776542 4788999988765 347899998
Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+.. ++++..-+...+.+.+-+.-+.+.
T Consensus 74 a~t-----~~De~Nl~~~~~Ak~~~~~~~~ia 100 (461)
T 4g65_A 74 AVT-----NTDETNMAACQVAFTLFNTPNRIA 100 (461)
T ss_dssp ECC-----SCHHHHHHHHHHHHHHHCCSSEEE
T ss_pred EEc-----CChHHHHHHHHHHHHhcCCcccee
Confidence 742 112233344445555544444443
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=85.35 E-value=3.7 Score=33.24 Aligned_cols=77 Identities=22% Similarity=0.176 Sum_probs=52.9
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CCCCcc
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------KANKYD 103 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~~~~fD 103 (272)
.++++|=.|++.|. ++..++++ |++|+.++.++...+...+.+...+....+.++.+|+.+.. .-++.|
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id 87 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVAE-GANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD 87 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence 46788888876542 34444554 89999999998877776666655543346788899987643 124789
Q ss_pred EEEEechh
Q 024096 104 RIISCGMI 111 (272)
Q Consensus 104 ~V~~~~~~ 111 (272)
+++.+..+
T Consensus 88 ~lv~nAg~ 95 (267)
T 3t4x_A 88 ILINNLGI 95 (267)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99887544
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=85.09 E-value=8.7 Score=31.19 Aligned_cols=88 Identities=19% Similarity=0.241 Sum_probs=53.4
Q ss_pred CEEEEECCCc-hH-HHHHHHHccCC--EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC-CccEEEEech
Q 024096 36 QEVLDIGCGW-GT-LAIEIVKQTGC--KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN-KYDRIISCGM 110 (272)
Q Consensus 36 ~~vLDiG~G~-G~-~~~~l~~~~~~--~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~-~fD~V~~~~~ 110 (272)
.+|.=||+|. |. ++..+++. +. +|+++|.++...+.+++ .|... . ...|..+.. . ..|+|+..
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~-g~~~~V~~~d~~~~~~~~~~~----~g~~~--~-~~~~~~~~~--~~~aDvVila-- 69 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVD----LGIID--E-GTTSIAKVE--DFSPDFVMLS-- 69 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHH----TTSCS--E-EESCGGGGG--GTCCSEEEEC--
T ss_pred cEEEEEecCHHHHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHH----CCCcc--c-ccCCHHHHh--cCCCCEEEEc--
Confidence 3688899884 32 33344443 55 89999999987766543 34311 1 122332221 3 67999874
Q ss_pred hhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 111 IEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
++......+++++...++++..++.
T Consensus 70 ---vp~~~~~~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 70 ---SPVRTFREIAKKLSYILSEDATVTD 94 (281)
T ss_dssp ---SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred ---CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 4444456788888888888875543
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=84.90 E-value=5.2 Score=33.45 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=55.2
Q ss_pred CCCEEEEECCCc-hH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC---CCeEEE-----EcccCCCCCCCCcc
Q 024096 34 KGQEVLDIGCGW-GT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ---DHIRFY-----LCDYRQLPKANKYD 103 (272)
Q Consensus 34 ~~~~vLDiG~G~-G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~---~~i~~~-----~~d~~~~~~~~~fD 103 (272)
...+|.=||+|. |. ++..|++. +.+|+.+ .+++.++..++. |+. ....+. ..|.. ....+|
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~-G~~V~l~-~~~~~~~~i~~~----g~~~~~~~~~~~~~~~~~~~~~---~~~~~D 88 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARA-GHEVILI-ARPQHVQAIEAT----GLRLETQSFDEQVKVSASSDPS---AVQGAD 88 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHT-TCEEEEE-CCHHHHHHHHHH----CEEEECSSCEEEECCEEESCGG---GGTTCS
T ss_pred cCCcEEEECcCHHHHHHHHHHHHC-CCeEEEE-EcHhHHHHHHhC----CeEEEcCCCcEEEeeeeeCCHH---HcCCCC
Confidence 346899999994 32 44555554 7799999 888777766543 210 001110 11111 125689
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+|+..- +......+++.+...++|+..++.
T Consensus 89 ~vilav-----k~~~~~~~l~~l~~~l~~~~~iv~ 118 (318)
T 3hwr_A 89 LVLFCV-----KSTDTQSAALAMKPALAKSALVLS 118 (318)
T ss_dssp EEEECC-----CGGGHHHHHHHHTTTSCTTCEEEE
T ss_pred EEEEEc-----ccccHHHHHHHHHHhcCCCCEEEE
Confidence 998753 333457889999999998876654
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=84.89 E-value=5.4 Score=32.18 Aligned_cols=103 Identities=12% Similarity=0.101 Sum_probs=61.9
Q ss_pred CCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCC---HHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----------
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLS---EEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---------- 97 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s---~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---------- 97 (272)
.+.++|=.|++.| ++..+++. .|++|+.++.+ ....+...+.+...+ .++.++.+|+.+..
T Consensus 10 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 86 (262)
T 3ksu_A 10 KNKVIVIAGGIKN-LGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFAE 86 (262)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence 4678898887655 33333333 48899988654 344444444444433 47899999988754
Q ss_pred -CCCCccEEEEechhh------ccChhhHHH-----------HHHHHHhcCccCcEEEEE
Q 024096 98 -KANKYDRIISCGMIE------HVGHDYMEE-----------FFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~------~~~~~~~~~-----------~l~~~~~~LkpgG~l~i~ 139 (272)
.-++.|+++.+..+. ..+.+++.. +.+.+...|+++|++++.
T Consensus 87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 146 (262)
T 3ksu_A 87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITI 146 (262)
T ss_dssp HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEE
Confidence 014789998875432 222233222 344555666778887763
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=84.82 E-value=3 Score=35.18 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=63.3
Q ss_pred CCCEEEEECCCchH--HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------CC-CC---------CeEEEEcccC
Q 024096 34 KGQEVLDIGCGWGT--LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA-------GL-QD---------HIRFYLCDYR 94 (272)
Q Consensus 34 ~~~~vLDiG~G~G~--~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~-------g~-~~---------~i~~~~~d~~ 94 (272)
...+|-=||+|+=+ ++..++. .|.+|+.+|++++.++.+.+++++. +. .. ++.+ ..|+.
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~-~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~-~~~l~ 82 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFAS-GGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS-CTNLA 82 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE-ECCHH
T ss_pred CCCeEEEECCcHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc-ccchH
Confidence 34689999999654 4444555 4899999999999988887766432 21 11 1222 12221
Q ss_pred CCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 95 QLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 95 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
+ .-...|+|+ -.+.+.+ +-..++++++..+++|+..|.-++.+.
T Consensus 83 ~--a~~~ad~Vi-Eav~E~l--~iK~~lf~~l~~~~~~~aIlaSNTSsl 126 (319)
T 3ado_A 83 E--AVEGVVHIQ-ECVPENL--DLKRKIFAQLDSIVDDRVVLSSSSSCL 126 (319)
T ss_dssp H--HTTTEEEEE-ECCCSCH--HHHHHHHHHHHTTCCSSSEEEECCSSC
T ss_pred h--HhccCcEEe-eccccHH--HHHHHHHHHHHHHhhhcceeehhhhhc
Confidence 1 113456654 3344544 445789999999999988776544443
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=84.68 E-value=3 Score=40.86 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=52.1
Q ss_pred CCCEEEEECCCchHHHHHHHHccCC--EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC----------------
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGC--KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ---------------- 95 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~--~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~---------------- 95 (272)
...+++|+-||.|+++.-+.+. |. .+.++|+++..++.-+.|. +...++.+|+.+
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~A-G~~~vv~avEid~~A~~ty~~N~------p~~~~~~~DI~~l~~~~~~~di~~~~~~ 611 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQA-GISDTLWAIEMWDPAAQAFRLNN------PGSTVFTEDCNILLKLVMAGETTNSRGQ 611 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHH-TSEEEEEEECSSHHHHHHHHHHC------TTSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred CCCeEEEeccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhC------CCCccccccHHHHhhhccchhhhhhhhh
Confidence 4469999999999999988876 64 5779999998877766553 244566666422
Q ss_pred -CCCCCCccEEEEechhhcc
Q 024096 96 -LPKANKYDRIISCGMIEHV 114 (272)
Q Consensus 96 -~~~~~~fD~V~~~~~~~~~ 114 (272)
++..+.+|+|+....-..+
T Consensus 612 ~lp~~~~vDll~GGpPCQ~F 631 (1002)
T 3swr_A 612 RLPQKGDVEMLCGGPPCQGF 631 (1002)
T ss_dssp BCCCTTTCSEEEECCCCTTC
T ss_pred hcccCCCeeEEEEcCCCcch
Confidence 2223578999987654433
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=84.67 E-value=15 Score=30.04 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=54.3
Q ss_pred CEEEEECCCchH--HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE--------c---ccCCCC-CCCC
Q 024096 36 QEVLDIGCGWGT--LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL--------C---DYRQLP-KANK 101 (272)
Q Consensus 36 ~~vLDiG~G~G~--~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~--------~---d~~~~~-~~~~ 101 (272)
++|.=||+|.-+ ++..|++ .+.+|+.+|.+++..+..++. |. .... . +..+.. .-..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~-~g~~V~~~~r~~~~~~~~~~~----g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQ-GGNDVTLIDQWPAHIEAIRKN----GL----IADFNGEEVVANLPIFSPEEIDHQNEQ 74 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHH----CE----EEEETTEEEEECCCEECGGGCCTTSCC
T ss_pred CeEEEECcCHHHHHHHHHHHh-CCCcEEEEECCHHHHHHHHhC----CE----EEEeCCCeeEecceeecchhhcccCCC
Confidence 479999998433 3344554 377999999998877665543 31 1111 0 111111 1126
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.|+|+..- +......+++.+...++|+..++.
T Consensus 75 ~d~vi~~v-----~~~~~~~v~~~l~~~l~~~~~iv~ 106 (316)
T 2ew2_A 75 VDLIIALT-----KAQQLDAMFKAIQPMITEKTYVLC 106 (316)
T ss_dssp CSEEEECS-----CHHHHHHHHHHHGGGCCTTCEEEE
T ss_pred CCEEEEEe-----ccccHHHHHHHHHHhcCCCCEEEE
Confidence 89998853 334457788888888888766553
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.54 E-value=6.2 Score=31.99 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=52.9
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----------C
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK-----------A 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~-----------~ 99 (272)
.+.+||=.|++.|. ++..|++ .|.+|++++.++...+...+.+...+.+.++.++.+|+.+... .
T Consensus 31 ~~k~vlVTGasggIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 109 (279)
T 1xg5_A 31 RDRLALVTGASGGIGAAVARALVQ-QGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 109 (279)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence 46788888865442 3334444 4889999999988777666666665554578889999876541 1
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
+.+|+|+.+..+
T Consensus 110 g~iD~vi~~Ag~ 121 (279)
T 1xg5_A 110 SGVDICINNAGL 121 (279)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 368999887543
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=84.47 E-value=5.6 Score=32.03 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=43.9
Q ss_pred CCCEEEEECCCc-hHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------C
Q 024096 34 KGQEVLDIGCGW-GTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------K 98 (272)
Q Consensus 34 ~~~~vLDiG~G~-G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~ 98 (272)
.+.++|=.|++. |+++..+++. .+++|+.++.++...+...+.....+ ...++.+|+.+.. .
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG---SDIVLQCDVAEDASIDTMFAELGKV 84 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcC---CcEEEEccCCCHHHHHHHHHHHHHH
Confidence 467888888651 4444444332 48899999887622222222222222 3478889987643 1
Q ss_pred CCCccEEEEechh
Q 024096 99 ANKYDRIISCGMI 111 (272)
Q Consensus 99 ~~~fD~V~~~~~~ 111 (272)
-+..|+++.+..+
T Consensus 85 ~g~iD~lv~~Ag~ 97 (265)
T 1qsg_A 85 WPKFDGFVHSIGF 97 (265)
T ss_dssp CSSEEEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 1378999887654
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=84.37 E-value=0.38 Score=39.35 Aligned_cols=54 Identities=7% Similarity=0.020 Sum_probs=37.1
Q ss_pred eEEEEcccCCCC---CCCCccEEEEechhhcc--------Ch----hhHHHHHHHHHhcCccCcEEEEE
Q 024096 86 IRFYLCDYRQLP---KANKYDRIISCGMIEHV--------GH----DYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 86 i~~~~~d~~~~~---~~~~fD~V~~~~~~~~~--------~~----~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..++++|..+.. ++++||+|++......- .. +.....++++.++|+|+|.+++.
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 456778864432 45689999998765322 01 13456788889999999999886
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=84.35 E-value=6.1 Score=31.45 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=54.2
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----------C
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK-----------A 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~-----------~ 99 (272)
.+.+||=.|++.|. ++..|+++ |.+|+.++.++...+...+.+...+ .++.++.+|+.+... -
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALARE-GAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEF 84 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46789988876552 44455554 8899999999988877777666554 478899999887540 1
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
+..|+++.+..+
T Consensus 85 g~id~li~~Ag~ 96 (253)
T 3qiv_A 85 GGIDYLVNNAAI 96 (253)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 378999987654
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.35 E-value=6.6 Score=31.62 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=54.8
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.++++|=.|++.|. ++..|+++ |++|+.++.++...+...+.+...+ .++.++.+|+.+.. .-
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQ-GADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKAY 86 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 56789988887653 44555554 8899999999988877777776654 47899999988754 12
Q ss_pred CCccEEEEech
Q 024096 100 NKYDRIISCGM 110 (272)
Q Consensus 100 ~~fD~V~~~~~ 110 (272)
++.|+++.+..
T Consensus 87 g~id~lv~nAg 97 (264)
T 3ucx_A 87 GRVDVVINNAF 97 (264)
T ss_dssp SCCSEEEECCC
T ss_pred CCCcEEEECCC
Confidence 47899988753
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=84.26 E-value=9.1 Score=31.12 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=60.8
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHH-HHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----------
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEE-QLKYAEIKVREAGLQDHIRFYLCDYRQLPK----------- 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~-~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~----------- 98 (272)
.+.++|=.|++.|. ++..|++ .|.+|+.++.++. ..+...+.+...+ .++.++.+|+.+...
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 104 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGR-RGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI 104 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35678877775542 3334444 4889999987753 2344334444433 368889999876430
Q ss_pred CCCccEEEEechhhcc------ChhhHHH-----------HHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHV------GHDYMEE-----------FFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~------~~~~~~~-----------~l~~~~~~LkpgG~l~i~ 139 (272)
-+..|+++.+..+... +.+++.. +++.+...|+.+|+++..
T Consensus 105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 162 (283)
T 1g0o_A 105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 162 (283)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEE
Confidence 1368999887654322 2232222 345556666677888764
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=84.26 E-value=5 Score=33.55 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=55.6
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.+.+||=.|++.|. ++..|+++ |.+|++++.++...+.+.+.+...+...++.++.+|+.+.. .-
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~-G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQ-GCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF 85 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 46789999887553 44445554 88999999999888877777766554347899999987753 01
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
+..|+++.+..+
T Consensus 86 g~id~lv~nAg~ 97 (319)
T 3ioy_A 86 GPVSILCNNAGV 97 (319)
T ss_dssp CCEEEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 468999987654
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=83.94 E-value=2 Score=35.50 Aligned_cols=55 Identities=16% Similarity=-0.068 Sum_probs=36.4
Q ss_pred EcccCCCCCCCCccEEEEechhhccChh---------hHHHHHHHHHhcCccCcEEEEEeecCC
Q 024096 90 LCDYRQLPKANKYDRIISCGMIEHVGHD---------YMEEFFGCCESLLATHGLLVLQFISAP 144 (272)
Q Consensus 90 ~~d~~~~~~~~~fD~V~~~~~~~~~~~~---------~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272)
..|+...+..+++|+|++.-.-..-+.. ...-+++...++|+|||.+++-.+...
T Consensus 195 ~lDfg~p~~~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvygga 258 (320)
T 2hwk_A 195 RLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYA 258 (320)
T ss_dssp CGGGCSCTTSCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCC
T ss_pred ccccCCccccCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 6666664444779999998543222222 122356777899999999999766654
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=83.68 E-value=2.9 Score=37.00 Aligned_cols=97 Identities=10% Similarity=0.029 Sum_probs=56.2
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 23 VSVLIEKAR-VSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 23 ~~~l~~~l~-~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
++.+.+..+ .-.|.+|+=+|+|. |......++..|++|+++|.++.....+. ..| +++. ++.+.- .
T Consensus 234 vdgI~Ratg~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~----~~G----~~vv--~LeElL--~ 301 (464)
T 3n58_A 234 VDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAA----MDG----FEVV--TLDDAA--S 301 (464)
T ss_dssp HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH----HTT----CEEC--CHHHHG--G
T ss_pred HHHHHHhcCCcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH----hcC----ceec--cHHHHH--h
Confidence 344444443 34789999999985 44444444447999999999986443332 222 2332 333322 4
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
..|+|+....-.|+ +-++....||||++++-
T Consensus 302 ~ADIVv~atgt~~l-------I~~e~l~~MK~GAILIN 332 (464)
T 3n58_A 302 TADIVVTTTGNKDV-------ITIDHMRKMKDMCIVGN 332 (464)
T ss_dssp GCSEEEECCSSSSS-------BCHHHHHHSCTTEEEEE
T ss_pred hCCEEEECCCCccc-------cCHHHHhcCCCCeEEEE
Confidence 57998875332333 11344566899988764
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.67 E-value=7.2 Score=31.56 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=64.2
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEE-cCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----------
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGI-TLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK----------- 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gv-d~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~----------- 98 (272)
.+.++|=.|++.|. ++..|++. |++|+.+ ..++...+...+.+...+ .++.++.+|+.+...
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~-G~~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 102 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASD-GFTVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEA 102 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHH-TCEEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56789988877663 44555554 8888876 445555555555555544 478999999877540
Q ss_pred CCCccEEEEechhhc------cChhhHH-----------HHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEH------VGHDYME-----------EFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~------~~~~~~~-----------~~l~~~~~~LkpgG~l~i~ 139 (272)
-++.|+++.+..+.. .+.+++. .+++.+...++++|+++..
T Consensus 103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~i 160 (267)
T 3u5t_A 103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINM 160 (267)
T ss_dssp HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEE
Confidence 147899988764432 2222222 2445566667778888764
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=83.58 E-value=8.4 Score=29.75 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=56.2
Q ss_pred CEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEech
Q 024096 36 QEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGM 110 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~ 110 (272)
++||=.|+ +|.++..+++. .+.+|++++-++...... ...+++++.+|+.+.. .-..+|+|+....
T Consensus 1 MkilVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--------~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag 71 (224)
T 3h2s_A 1 MKIAVLGA-TGRAGSAIVAEARRRGHEVLAVVRDPQKAADR--------LGATVATLVKEPLVLTEADLDSVDAVVDALS 71 (224)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH--------TCTTSEEEECCGGGCCHHHHTTCSEEEECCC
T ss_pred CEEEEEcC-CCHHHHHHHHHHHHCCCEEEEEEecccccccc--------cCCCceEEecccccccHhhcccCCEEEECCc
Confidence 36787875 45544444443 478999999987654322 1247899999998765 2246899988765
Q ss_pred hhccC--hhhHHHHHHHHHhcCcc-CcEEEEE
Q 024096 111 IEHVG--HDYMEEFFGCCESLLAT-HGLLVLQ 139 (272)
Q Consensus 111 ~~~~~--~~~~~~~l~~~~~~Lkp-gG~l~i~ 139 (272)
..+-+ .........++.+.++. |+++++.
T Consensus 72 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~ 103 (224)
T 3h2s_A 72 VPWGSGRGYLHLDFATHLVSLLRNSDTLAVFI 103 (224)
T ss_dssp CCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEE
T ss_pred cCCCcchhhHHHHHHHHHHHHHHHcCCcEEEE
Confidence 43111 11123344555555544 4566553
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=83.41 E-value=0.58 Score=39.58 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=40.0
Q ss_pred CeEEE-EcccCCCC---CCCCccEEEEechhhcc------Ch---hhHHHHHHHHHhcCccCcEEEEEe
Q 024096 85 HIRFY-LCDYRQLP---KANKYDRIISCGMIEHV------GH---DYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 85 ~i~~~-~~d~~~~~---~~~~fD~V~~~~~~~~~------~~---~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
...++ ++|..+.. +++++|+|++......- .. ......+.++.++|+|||.+++..
T Consensus 38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~ 106 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 106 (319)
T ss_dssp EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 45777 99976532 45789999998765421 00 134677888999999999999853
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=83.38 E-value=7.2 Score=32.19 Aligned_cols=76 Identities=22% Similarity=0.275 Sum_probs=55.8
Q ss_pred CCCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----------
Q 024096 33 SKGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK----------- 98 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~----------- 98 (272)
-.+.+||=.|++.|. ++..|+++ |.+|+.++.++...+.+.+.+...+ .++.++.+|+.+...
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARR-GARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRL 105 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 357789999987653 44455554 8899999999988887777776654 478999999887540
Q ss_pred CCCccEEEEechh
Q 024096 99 ANKYDRIISCGMI 111 (272)
Q Consensus 99 ~~~fD~V~~~~~~ 111 (272)
.+..|+++.+..+
T Consensus 106 ~g~id~lvnnAg~ 118 (301)
T 3tjr_A 106 LGGVDVVFSNAGI 118 (301)
T ss_dssp HSSCSEEEECCCC
T ss_pred CCCCCEEEECCCc
Confidence 1378999987554
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=83.16 E-value=16 Score=29.73 Aligned_cols=84 Identities=13% Similarity=0.185 Sum_probs=53.4
Q ss_pred CEEEEECC-Cc-hH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhh
Q 024096 36 QEVLDIGC-GW-GT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIE 112 (272)
Q Consensus 36 ~~vLDiG~-G~-G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~ 112 (272)
.+|.=||+ |. |. ++..+++ .+.+|+++|.+++..+.+.+ .|. .. .+..+ .....|+|+..
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~-~g~~V~~~~r~~~~~~~~~~----~g~----~~--~~~~~--~~~~aDvVi~a---- 74 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHD-SAHHLAAIEIAPEGRDRLQG----MGI----PL--TDGDG--WIDEADVVVLA---- 74 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH-SSSEEEEECCSHHHHHHHHH----TTC----CC--CCSSG--GGGTCSEEEEC----
T ss_pred CEEEEECCCCHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHh----cCC----Cc--CCHHH--HhcCCCEEEEc----
Confidence 48999999 84 32 3444554 47799999999887766544 232 11 12221 12468999875
Q ss_pred ccChhhHHHHHHHHHhcCccCcEEE
Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
+++.....+++++...++++..++
T Consensus 75 -v~~~~~~~v~~~l~~~l~~~~ivv 98 (286)
T 3c24_A 75 -LPDNIIEKVAEDIVPRVRPGTIVL 98 (286)
T ss_dssp -SCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred -CCchHHHHHHHHHHHhCCCCCEEE
Confidence 444445778888888888776544
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=82.97 E-value=3.9 Score=32.81 Aligned_cols=75 Identities=19% Similarity=0.088 Sum_probs=54.4
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK----------AN 100 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~----------~~ 100 (272)
.+.++|=.|++.|. ++..++++ |++|+.++.++...+...+.+...+ .++.++.+|+.+... .+
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~g 82 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAE-GFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAHA 82 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHT-TCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence 46788888887663 44555554 8899999999887777777766654 478999999877540 04
Q ss_pred CccEEEEechh
Q 024096 101 KYDRIISCGMI 111 (272)
Q Consensus 101 ~fD~V~~~~~~ 111 (272)
..|+++.+..+
T Consensus 83 ~id~lv~nAg~ 93 (252)
T 3h7a_A 83 PLEVTIFNVGA 93 (252)
T ss_dssp CEEEEEECCCC
T ss_pred CceEEEECCCc
Confidence 78999887654
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=82.95 E-value=6.7 Score=31.44 Aligned_cols=75 Identities=16% Similarity=0.152 Sum_probs=54.2
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----------C
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK-----------A 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~-----------~ 99 (272)
.+.++|=.|++.|. ++..++++ |++|+.++.++...+...+.+...+ .++.++.+|+.+... -
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 87 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKA-GASVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQF 87 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46788888876653 44455554 8899999999988777777666654 478999999877540 1
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
++.|+++.+..+
T Consensus 88 g~id~lv~nAg~ 99 (256)
T 3gaf_A 88 GKITVLVNNAGG 99 (256)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 378999887654
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=82.49 E-value=0.21 Score=47.87 Aligned_cols=93 Identities=15% Similarity=0.187 Sum_probs=58.8
Q ss_pred HcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-------CCC
Q 024096 29 KARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-------PKA 99 (272)
Q Consensus 29 ~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-------~~~ 99 (272)
...+++|++||=.|+ |.|..+..+++..|++|++++.++ ..+..+ .|. -+++...-.++ ...
T Consensus 340 ~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~-k~~~l~-----lga---~~v~~~~~~~~~~~i~~~t~g 410 (795)
T 3slk_A 340 LAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASED-KWQAVE-----LSR---EHLASSRTCDFEQQFLGATGG 410 (795)
T ss_dssp CTCCCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGG-GGGGSC-----SCG---GGEECSSSSTHHHHHHHHSCS
T ss_pred HhCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChH-Hhhhhh-----cCh---hheeecCChhHHHHHHHHcCC
Confidence 345789999999984 578899999998889999998554 211111 221 11121111111 123
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+|+|+-.- +. ..++...+.|+|+|+++..
T Consensus 411 ~GvDvVld~~-----gg----~~~~~~l~~l~~~Gr~v~i 441 (795)
T 3slk_A 411 RGVDVVLNSL-----AG----EFADASLRMLPRGGRFLEL 441 (795)
T ss_dssp SCCSEEEECC-----CT----TTTHHHHTSCTTCEEEEEC
T ss_pred CCeEEEEECC-----Cc----HHHHHHHHHhcCCCEEEEe
Confidence 5799998742 21 2456778899999999863
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=82.11 E-value=2.5 Score=30.20 Aligned_cols=89 Identities=12% Similarity=0.101 Sum_probs=49.3
Q ss_pred CCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---C--CCCccEEE
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---K--ANKYDRII 106 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~--~~~fD~V~ 106 (272)
+.+|+=+|+| ..+..+++. .+.+|+.+|.++...+.+++ . ...++.+|..+.. . ...+|+|+
T Consensus 6 ~~~v~I~G~G--~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----~----~~~~~~~d~~~~~~l~~~~~~~~d~vi 75 (144)
T 2hmt_A 6 NKQFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----Y----ATHAVIANATEENELLSLGIRNFEYVI 75 (144)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT----T----CSEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred CCcEEEECCC--HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----h----CCEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence 4579999985 344333332 47789999998865543321 1 2456777765432 1 24689988
Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
..-.-. ......+....+.+.+. .++.
T Consensus 76 ~~~~~~----~~~~~~~~~~~~~~~~~-~ii~ 102 (144)
T 2hmt_A 76 VAIGAN----IQASTLTTLLLKELDIP-NIWV 102 (144)
T ss_dssp ECCCSC----HHHHHHHHHHHHHTTCS-EEEE
T ss_pred ECCCCc----hHHHHHHHHHHHHcCCC-eEEE
Confidence 753221 11222344444445665 5554
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=82.10 E-value=6.7 Score=31.52 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=54.0
Q ss_pred CCCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----------
Q 024096 33 SKGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK----------- 98 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~----------- 98 (272)
-.+.+||=.|++.|. ++..|++ .|.+|+.++.++...+...+.+...+ .++.++.+|+.+...
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~ 103 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGS-LGARVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAA 103 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHh
Confidence 356788888876542 3344444 48899999999988877777776654 478999999877540
Q ss_pred CCCccEEEEechh
Q 024096 99 ANKYDRIISCGMI 111 (272)
Q Consensus 99 ~~~fD~V~~~~~~ 111 (272)
-++.|+++.+..+
T Consensus 104 ~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 104 HGRCDVLVNNAGV 116 (262)
T ss_dssp HSCCSEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 1468999987654
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=81.60 E-value=7.8 Score=31.55 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=53.1
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.+.++|=.|++.|. ++..|+++ |++|+.++.++...+...+.+...+ .++.++.+|+.+.. .-
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAAR-GIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVERF 99 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46789989876653 44455554 8999999999988777776666544 47899999987753 01
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
++.|+++.+..+
T Consensus 100 g~id~lv~nAg~ 111 (279)
T 3sju_A 100 GPIGILVNSAGR 111 (279)
T ss_dssp CSCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 478999887544
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=81.59 E-value=15 Score=29.49 Aligned_cols=87 Identities=18% Similarity=0.204 Sum_probs=53.4
Q ss_pred CCEEEEECCCc-hH-HHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh
Q 024096 35 GQEVLDIGCGW-GT-LAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272)
Q Consensus 35 ~~~vLDiG~G~-G~-~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272)
+.+|.=||+|. |. ++..+++. +.+ |+.+|.+++..+...+.. + +.. ..|..+.. ...|+|+..
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~-g~~~v~~~~~~~~~~~~~~~~~---g----~~~-~~~~~~~~--~~~Dvvi~a--- 75 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRK-GFRIVQVYSRTEESARELAQKV---E----AEY-TTDLAEVN--PYAKLYIVS--- 75 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSHHHHHHHHHHT---T----CEE-ESCGGGSC--SCCSEEEEC---
T ss_pred CCeEEEEcCCHHHHHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHc---C----Cce-eCCHHHHh--cCCCEEEEe---
Confidence 45799999984 32 33444443 566 899999988776554431 2 232 23433322 457999875
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEE
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
+++.....+++.+...+++|..++
T Consensus 76 --v~~~~~~~v~~~l~~~~~~~~ivv 99 (266)
T 3d1l_A 76 --LKDSAFAELLQGIVEGKREEALMV 99 (266)
T ss_dssp --CCHHHHHHHHHHHHTTCCTTCEEE
T ss_pred --cCHHHHHHHHHHHHhhcCCCcEEE
Confidence 343444677788887787775544
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.42 E-value=8.8 Score=30.38 Aligned_cols=73 Identities=23% Similarity=0.267 Sum_probs=50.1
Q ss_pred CCCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CCCCc
Q 024096 33 SKGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------KANKY 102 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~~~~f 102 (272)
.++.+||=.|++.|. ++..|+++ |.+|+.++.++...+...+.+ ..++.+..+|+.+.. .....
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~i 85 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKL-GSKVIISGSNEEKLKSLGNAL-----KDNYTIEVCNLANKEECSNLISKTSNL 85 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHHTCSCC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHh-----ccCccEEEcCCCCHHHHHHHHHhcCCC
Confidence 467889988876552 34444554 889999999987766655443 247889999987643 22478
Q ss_pred cEEEEechh
Q 024096 103 DRIISCGMI 111 (272)
Q Consensus 103 D~V~~~~~~ 111 (272)
|+++.+..+
T Consensus 86 d~li~~Ag~ 94 (249)
T 3f9i_A 86 DILVCNAGI 94 (249)
T ss_dssp SEEEECCC-
T ss_pred CEEEECCCC
Confidence 999887654
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=81.29 E-value=9.5 Score=30.44 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=54.2
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC-----------C
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYRQLP-----------K 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~-----------~ 98 (272)
.+.++|=.|++.|. ++..|+++ |++|+.++.++...+...+.+...... .++.++.+|+.+.. .
T Consensus 6 ~~k~~lVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (250)
T 3nyw_A 6 QKGLAIITGASQGIGAVIAAGLATD-GYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK 84 (250)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence 46788888887653 44555554 889999999998877776666554221 46889999988754 0
Q ss_pred CCCccEEEEechh
Q 024096 99 ANKYDRIISCGMI 111 (272)
Q Consensus 99 ~~~fD~V~~~~~~ 111 (272)
-++.|+++.+..+
T Consensus 85 ~g~iD~lvnnAg~ 97 (250)
T 3nyw_A 85 YGAVDILVNAAAM 97 (250)
T ss_dssp HCCEEEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 1478999887654
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.09 E-value=7.5 Score=31.48 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=53.1
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.+.++|=.|++.|. ++..|++. |++|+.++.++...+...+.+...+ .++.++.+|+.+.. .-
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVA-GAKILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTW 79 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35678888876553 34445554 8999999999988877777776654 46888999987753 01
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
+..|+++.+..+
T Consensus 80 g~iD~lVnnAG~ 91 (264)
T 3tfo_A 80 GRIDVLVNNAGV 91 (264)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 478999887543
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=81.08 E-value=22 Score=33.61 Aligned_cols=152 Identities=15% Similarity=0.157 Sum_probs=86.5
Q ss_pred CEEEEECCCchHHH--HHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-----------C---CCCCeEEEEcccCCCCCC
Q 024096 36 QEVLDIGCGWGTLA--IEIVKQTGCKYTGITLSEEQLKYAEIKVREA-----------G---LQDHIRFYLCDYRQLPKA 99 (272)
Q Consensus 36 ~~vLDiG~G~G~~~--~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~-----------g---~~~~i~~~~~d~~~~~~~ 99 (272)
.+|-=||+|+-+.. ..++. .|..|+.+|++++.++.+++.+... . ...++. ...|...+
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~-aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l--- 391 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFAR-VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLR-FSSSTKEL--- 391 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHT-TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEE-EESCGGGG---
T ss_pred cEEEEEcccHHHHHHHHHHHh-CCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhc-ccCcHHHH---
Confidence 69999999976544 44444 5899999999999998887765432 0 001111 22223222
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCc-cccccCcchhhhhccc-CCCCCC--------
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQC-YDEYRLSPGFIKEYIF-PGGCLP-------- 169 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~~~~~~~-p~~~~~-------- 169 (272)
...|+|+= .+++.+ +-..++++++..+++|+..|.-.+.+.+-.. .....+...++..++| |-..++
T Consensus 392 ~~aDlVIE-AV~E~l--~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVEvi~g~ 468 (742)
T 3zwc_A 392 STVDLVVE-AVFEDM--NLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSR 468 (742)
T ss_dssp GSCSEEEE-CCCSCH--HHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEEEEEECS
T ss_pred hhCCEEEE-eccccH--HHHHHHHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceEEEecCC
Confidence 34677663 455655 4557899999999999987765444433221 1111233445555444 333222
Q ss_pred --CH---HHHHHHhhcCCCcEEEEEEecCccH
Q 024096 170 --SL---GRVTSAMTSSSGLCVEHLENIGIHY 196 (272)
Q Consensus 170 --~~---~~~~~~l~~~~Gf~v~~~~~~~~~~ 196 (272)
+. +... .+.++-|-..+.+.+....+
T Consensus 469 ~Ts~e~~~~~~-~~~~~lgK~pV~vkd~pGFi 499 (742)
T 3zwc_A 469 YSSPTTIATVM-SLSKKIGKIGVVVGNCYGFV 499 (742)
T ss_dssp SCCHHHHHHHH-HHHHHTTCEEEECCCSTTTT
T ss_pred CCCHHHHHHHH-HHHHHhCCCCcccCCCCCcc
Confidence 11 2222 34445676666666654433
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=81.08 E-value=24 Score=31.23 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=58.0
Q ss_pred CEEEEECCCchH--HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-------cC-C------CCCeEEEEcccCCCCCC
Q 024096 36 QEVLDIGCGWGT--LAIEIVKQTGCKYTGITLSEEQLKYAEIKVRE-------AG-L------QDHIRFYLCDYRQLPKA 99 (272)
Q Consensus 36 ~~vLDiG~G~G~--~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~-------~g-~------~~~i~~~~~d~~~~~~~ 99 (272)
.+|.=||+|.-+ ++..+++ .|.+|+++|.+++.++.+++.+.. .| + .....+ ..|...+
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~-~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~~--- 112 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFAR-VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKEL--- 112 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHT-TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGGG---
T ss_pred CEEEEECcCHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHHH---
Confidence 579999999633 4444555 478999999999988877664321 11 0 011222 3444222
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
...|+|+..-. +.. +....+++++...++|+..++-
T Consensus 113 ~~aDlVIeaVp-e~~--~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 113 STVDLVVEAVF-EDM--NLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp TTCSEEEECCC-SCH--HHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCCCEEEEcCC-CCH--HHHHHHHHHHHhhCCCCeEEEe
Confidence 45798887432 111 2236788888888888866543
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=80.96 E-value=11 Score=30.36 Aligned_cols=77 Identities=13% Similarity=0.059 Sum_probs=53.6
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.+.++|=.|++.|. ++..++++ |++|+.++.++...+...+.+....-..++.++.+|+.+.. .-
T Consensus 7 ~~k~~lVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGLATVELLLEA-GAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL 85 (265)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 46788988887653 44555554 88999999998887777666655221235899999987753 01
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
++.|+++.+..+
T Consensus 86 g~id~lvnnAg~ 97 (265)
T 3lf2_A 86 GCASILVNNAGQ 97 (265)
T ss_dssp CSCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 478999887654
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.66 E-value=9.6 Score=31.22 Aligned_cols=77 Identities=16% Similarity=0.099 Sum_probs=53.3
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCC---EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----------
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGC---KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---------- 97 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---------- 97 (272)
.+.++|=.|++.|. ++..+++. ++ +|+.++.++...+...+.+.......++.++.+|+.+..
T Consensus 32 ~~k~~lVTGas~GIG~aia~~l~~~-G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 110 (287)
T 3rku_A 32 AKKTVLITGASAGIGKATALEYLEA-SNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP 110 (287)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred CCCEEEEecCCChHHHHHHHHHHHc-CCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 46789999876553 33444444 44 999999998888777766655432347899999987754
Q ss_pred -CCCCccEEEEechh
Q 024096 98 -KANKYDRIISCGMI 111 (272)
Q Consensus 98 -~~~~fD~V~~~~~~ 111 (272)
.-+..|+++.+..+
T Consensus 111 ~~~g~iD~lVnnAG~ 125 (287)
T 3rku_A 111 QEFKDIDILVNNAGK 125 (287)
T ss_dssp GGGCSCCEEEECCCC
T ss_pred HhcCCCCEEEECCCc
Confidence 11478999987654
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=80.61 E-value=13 Score=30.10 Aligned_cols=75 Identities=17% Similarity=0.120 Sum_probs=45.2
Q ss_pred CCCEEEEECCCc-hHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------C
Q 024096 34 KGQEVLDIGCGW-GTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------K 98 (272)
Q Consensus 34 ~~~~vLDiG~G~-G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~ 98 (272)
.+.++|=.|++. |+++..+++. .|++|+.++.++...+...+.....+ ++.++.+|+.+.. .
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~~ 96 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFG---SDLVVKCDVSLDEDIKNLKKFLEEN 96 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899888752 4444443332 48899999987742222222222222 3678889987643 0
Q ss_pred CCCccEEEEechh
Q 024096 99 ANKYDRIISCGMI 111 (272)
Q Consensus 99 ~~~fD~V~~~~~~ 111 (272)
-+..|+++.+..+
T Consensus 97 ~g~iD~lv~~Ag~ 109 (285)
T 2p91_A 97 WGSLDIIVHSIAY 109 (285)
T ss_dssp TSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 1478999887654
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=80.57 E-value=19 Score=29.84 Aligned_cols=96 Identities=14% Similarity=0.077 Sum_probs=56.2
Q ss_pred CCCEEEEECCCchH--HHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEec-
Q 024096 34 KGQEVLDIGCGWGT--LAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCG- 109 (272)
Q Consensus 34 ~~~~vLDiG~G~G~--~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~- 109 (272)
+..+|.=+|+|..+ ++..++.. ...++..+|++++....+.+.... .. .++... .|...+ ...|+|+...
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~-~~-~~i~~t-~d~~~l---~~aD~Vi~aag 86 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIF-NL-PNVEIS-KDLSAS---AHSKVVIFTVN 86 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHH-TC-TTEEEE-SCGGGG---TTCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhh-cC-CCeEEe-CCHHHH---CCCCEEEEcCC
Confidence 34689999999633 55555554 334899999998644455544432 22 256553 555333 4679998864
Q ss_pred -----------hhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 110 -----------MIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 110 -----------~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
....+ +-..++++++.+.- |++.+++
T Consensus 87 ~~~pG~tR~dl~~~n~--~i~~~i~~~i~~~~-p~a~iiv 123 (303)
T 2i6t_A 87 SLGSSQSYLDVVQSNV--DMFRALVPALGHYS-QHSVLLV 123 (303)
T ss_dssp C----CCHHHHHHHHH--HHHHHHHHHHHHHT-TTCEEEE
T ss_pred CCCCCCCHHHHHHHHH--HHHHHHHHHHHHhC-CCeEEEE
Confidence 22333 23456777777764 9999876
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=80.54 E-value=8.2 Score=30.97 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=54.5
Q ss_pred CCCEEEEECC-CchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----------
Q 024096 34 KGQEVLDIGC-GWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK----------- 98 (272)
Q Consensus 34 ~~~~vLDiG~-G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~----------- 98 (272)
.+.++|=.|+ |.|. ++..++++ +.+|+.++.++...+...+.+...+ ..++.++.+|+.+...
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 98 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLE-GADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVEK 98 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHC-CCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 4678998887 5442 45556665 8999999999888777776665443 2479999999987540
Q ss_pred CCCccEEEEechh
Q 024096 99 ANKYDRIISCGMI 111 (272)
Q Consensus 99 ~~~fD~V~~~~~~ 111 (272)
-++.|+++.+..+
T Consensus 99 ~g~id~li~~Ag~ 111 (266)
T 3o38_A 99 AGRLDVLVNNAGL 111 (266)
T ss_dssp HSCCCEEEECCCC
T ss_pred hCCCcEEEECCCc
Confidence 1378999887654
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=80.43 E-value=11 Score=29.80 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=50.6
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----------C
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK-----------A 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~-----------~ 99 (272)
.+.+||=.|++.|. ++..|++ .+.+|++++.++...+...+.++..+ .++.++.+|+.+... .
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAE-AGARVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQE 88 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 46789988875442 3334444 38899999999877666555555443 468999999877540 1
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
+..|+|+.+..+
T Consensus 89 ~~id~vi~~Ag~ 100 (260)
T 3awd_A 89 GRVDILVACAGI 100 (260)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 368999887543
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=80.43 E-value=4.9 Score=35.38 Aligned_cols=96 Identities=9% Similarity=0.062 Sum_probs=54.9
Q ss_pred HHHHHHHcCC-CCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 23 VSVLIEKARV-SKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 23 ~~~l~~~l~~-~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
++.+.+..+. -.|.+|.=+|.|. |.....+++..|++|+++|+++.....+.. .| ..+ .++.+.- .
T Consensus 198 ldgi~ratg~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~----~G----~~~--~sL~eal--~ 265 (436)
T 3h9u_A 198 VDGIKRATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAM----EG----YQV--LLVEDVV--E 265 (436)
T ss_dssp HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TT----CEE--CCHHHHT--T
T ss_pred HHHHHHhcCCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHH----hC----Cee--cCHHHHH--h
Confidence 3444444443 3688999999885 333333344478999999999865544432 22 222 2333322 4
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
..|+|+....-.++-. ++....||||..++
T Consensus 266 ~ADVVilt~gt~~iI~-------~e~l~~MK~gAIVI 295 (436)
T 3h9u_A 266 EAHIFVTTTGNDDIIT-------SEHFPRMRDDAIVC 295 (436)
T ss_dssp TCSEEEECSSCSCSBC-------TTTGGGCCTTEEEE
T ss_pred hCCEEEECCCCcCccC-------HHHHhhcCCCcEEE
Confidence 5798887443333311 13456678887665
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.26 E-value=11 Score=30.29 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=51.7
Q ss_pred CCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.+.+||=.|++.| ++..+++. .|.+|++++.++...+...+.+...+ .++.++.+|+.+.. .-
T Consensus 30 ~~k~vlITGasgg-IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 106 (272)
T 1yb1_A 30 TGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI 106 (272)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 5678998887544 44444332 48899999999877766666665544 47899999987643 01
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
+.+|+|+.+..+
T Consensus 107 g~iD~li~~Ag~ 118 (272)
T 1yb1_A 107 GDVSILVNNAGV 118 (272)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCcEEEECCCc
Confidence 368999887654
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=80.25 E-value=8.9 Score=31.01 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=59.0
Q ss_pred CCCEEEEECCC-chHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------C
Q 024096 34 KGQEVLDIGCG-WGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------K 98 (272)
Q Consensus 34 ~~~~vLDiG~G-~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~ 98 (272)
.+.++|=.|++ +|+++..+++. .|++|+.++.++...+...+.....+ ++.++.+|+.+.. .
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN---SPYVYELDVSKEEHFKSLYNSVKKD 81 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46789999875 24444444433 48899999887652222222222222 4688899987643 0
Q ss_pred CCCccEEEEechhh----------ccChhhHHH-----------HHHHHHhcCccCcEEEEEe
Q 024096 99 ANKYDRIISCGMIE----------HVGHDYMEE-----------FFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 99 ~~~fD~V~~~~~~~----------~~~~~~~~~-----------~l~~~~~~LkpgG~l~i~~ 140 (272)
-++.|+++.+..+. ..+.+++.. +.+.+...|+++|+++...
T Consensus 82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 144 (275)
T 2pd4_A 82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLS 144 (275)
T ss_dssp TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 13789998876433 222222222 3344556666678877643
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=80.07 E-value=6.7 Score=31.92 Aligned_cols=83 Identities=14% Similarity=-0.058 Sum_probs=49.3
Q ss_pred EEEEECCCc-hH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhcc
Q 024096 37 EVLDIGCGW-GT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHV 114 (272)
Q Consensus 37 ~vLDiG~G~-G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~ 114 (272)
+|.=||+|. |. ++..++ . +.+|+.+|.++...+...+. |. ... +..+. -...|+|+..-.-.
T Consensus 3 ~i~iiG~G~~G~~~a~~l~-~-g~~V~~~~~~~~~~~~~~~~----g~----~~~--~~~~~--~~~~D~vi~~v~~~-- 66 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLA-R-RFPTLVWNRTFEKALRHQEE----FG----SEA--VPLER--VAEARVIFTCLPTT-- 66 (289)
T ss_dssp CEEEECCSTTHHHHHHHHH-T-TSCEEEECSSTHHHHHHHHH----HC----CEE--CCGGG--GGGCSEEEECCSSH--
T ss_pred eEEEEcccHHHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHC----CC----ccc--CHHHH--HhCCCEEEEeCCCh--
Confidence 577889985 43 333444 3 77899999998776655443 22 111 11111 13579998753211
Q ss_pred ChhhHHHHHHHHHhcCccCcEEE
Q 024096 115 GHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 115 ~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
.....+++.+...+++|..++
T Consensus 67 --~~~~~v~~~l~~~l~~~~~vv 87 (289)
T 2cvz_A 67 --REVYEVAEALYPYLREGTYWV 87 (289)
T ss_dssp --HHHHHHHHHHTTTCCTTEEEE
T ss_pred --HHHHHHHHHHHhhCCCCCEEE
Confidence 124567777878888876554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 272 | ||||
| d2fk8a1 | 280 | c.66.1.18 (A:22-301) Methoxy mycolic acid synthase | 5e-53 | |
| d1kpia_ | 291 | c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [ | 3e-52 | |
| d1kpga_ | 285 | c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [ | 2e-51 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 2e-27 | |
| d2o57a1 | 282 | c.66.1.18 (A:16-297) Putative sarcosine dimethylgl | 4e-16 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 2e-15 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 3e-15 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 3e-14 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 3e-13 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 4e-12 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 1e-11 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 2e-11 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 5e-11 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 8e-11 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 2e-10 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-10 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 1e-09 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 7e-09 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 8e-09 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 3e-08 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 9e-08 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 1e-07 | |
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 2e-07 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 2e-07 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 2e-07 | |
| d1dusa_ | 194 | c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeo | 6e-07 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 9e-07 | |
| d1wy7a1 | 201 | c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A | 2e-06 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 2e-06 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 3e-06 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 9e-06 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 1e-05 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 2e-05 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 5e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 5e-05 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 5e-05 | |
| d1im8a_ | 225 | c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) | 9e-05 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 1e-04 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 1e-04 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 2e-04 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 6e-04 | |
| d2nxca1 | 254 | c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT | 0.001 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 0.001 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 0.002 | |
| d2fcaa1 | 204 | c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr | 0.002 | |
| d1zq9a1 | 278 | c.66.1.24 (A:36-313) Probable dimethyladenosine tr | 0.002 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 0.004 |
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 172 bits (435), Expect = 5e-53
Identities = 69/266 (25%), Positives = 108/266 (40%), Gaps = 13/266 (4%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
TYSCA F+ LE Q KV + ++K + G +LDIGCGWGT V++
Sbjct: 19 RTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNV 78
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
G+TLS+ Q E + + L + DRI+S EH GH+ +
Sbjct: 79 IGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPVDRIVSIEAFEHFGHENYD 136
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSP---------GFIKEYIFPGGCLPSL 171
+FF C +++ G + +Q + R FI IFPGG LPS
Sbjct: 137 DFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPST 196
Query: 172 GRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYF 231
+ +G V ++ HY +TLR W + + + + E+ + Y
Sbjct: 197 -EMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTS-EEVYNRYMKYL 254
Query: 232 DYCAASFKSRIIGDYQIVFSRPGKVA 257
C F ++ + + +PG A
Sbjct: 255 RGCEHYFTDEMLDCSLVTYLKPGAAA 280
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 170 bits (430), Expect = 3e-52
Identities = 71/268 (26%), Positives = 109/268 (40%), Gaps = 20/268 (7%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYSCA F+ LE Q K + ++K + G +LDIGCGWG+ V +
Sbjct: 28 MTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNV 87
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
G+TLSE Q + + E + + + DRI+S G EH +
Sbjct: 88 IGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFD--EPVDRIVSLGAFEHFADGAGD 145
Query: 121 E-------FFGCCESLLATHGLLVLQFISAPDQCYDE---------YRLSPGFIKEYIFP 164
FF +L G ++L I+ PD+ + FI IFP
Sbjct: 146 AGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFP 205
Query: 165 GGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFI 224
GG LP + +V +S++G VE IG +Y TL W + E +AL ++
Sbjct: 206 GGRLPRISQVD-YYSSNAGWKVERYHRIGANYVPTLNAWADALQAHKDEAIALKG-QETC 263
Query: 225 RTWEYYFDYCAASFKSRIIGDYQIVFSR 252
+ +Y C+ F+ + Q +
Sbjct: 264 DIYMHYLRGCSDLFRDKYTDVCQFTLVK 291
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 167 bits (424), Expect = 2e-51
Identities = 73/261 (27%), Positives = 115/261 (44%), Gaps = 13/261 (4%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
TYSCA F+ + L+ Q+ K+ + + K + G +LD+GCGWG + V++
Sbjct: 29 QTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNV 88
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME 120
G+TLS+ Q + + V + R L + Q DRI+S G EH GH+ +
Sbjct: 89 VGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAFEHFGHERYD 146
Query: 121 EFFGCCESLLATHGLLVLQFISAPDQCYD---------EYRLSPGFIKEYIFPGGCLPSL 171
FF LL G+++L I+ + FI IFPGG LPS+
Sbjct: 147 AFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSI 206
Query: 172 GRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYF 231
V S++G V ++++ HY +TL W + + +AL E + R + Y
Sbjct: 207 PMVQECA-SANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQAIALQSEEVYER-YMKYL 264
Query: 232 DYCAASFKSRIIGDYQIVFSR 252
CA F+ I Q +
Sbjct: 265 TGCAEMFRIGYIDVNQFTCQK 285
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 104 bits (259), Expect = 2e-27
Identities = 38/240 (15%), Positives = 66/240 (27%), Gaps = 10/240 (4%)
Query: 7 IFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS 66
I +SEH K + L R+ G +LD+G G G + + G TGI +S
Sbjct: 6 ISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMS 65
Query: 67 EEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCC 126
A+ + E G+ + + F D K D G G
Sbjct: 66 SLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGG--FAGAEELL 123
Query: 127 ESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSS----S 182
L G++++ E + +L + A
Sbjct: 124 AQSLKPGGIMLIGEPYWRQLPATEEIAQAC----GVSSTSDFLTLPGLVGAFDDLGYDVV 179
Query: 183 GLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKSRI 242
+ + E + R+ + A + + Y Y F +
Sbjct: 180 EMVLADQEGWDRYEAAKWLTMRRWLEANPDDDFAAEVRAELNIAPKRYVTYARECFGWGV 239
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Score = 74.0 bits (180), Expect = 4e-16
Identities = 38/250 (15%), Positives = 81/250 (32%), Gaps = 11/250 (4%)
Query: 11 EHEDLEVGQMRKVSVLIEK----ARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS 66
+ +++ +R L + + + + LD+G G+G A +V++ G + ++
Sbjct: 40 DQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIA 99
Query: 67 EEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCC 126
Q K E +AGL D+I + ++P + I D + F C
Sbjct: 100 PVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPD-KLKVFQEC 158
Query: 127 ESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCV 186
+L G++ + D + + SLG S GL
Sbjct: 159 ARVLKPRGVMAITDPMKEDGIDKSSI--QPILDRIKLHD--MGSLGLYRSLAK-ECGLVT 213
Query: 187 EHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKSRIIGDY 246
+ + + + SEI + E + ++ +
Sbjct: 214 LRTFSRPDSLVHHYSKVKAELIKRSSEIASFCSPEFQANMKRGLEHWIEG-GRAGKLTWG 272
Query: 247 QIVFSRPGKV 256
++F + K+
Sbjct: 273 GMLFRKSDKI 282
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 70.6 bits (172), Expect = 2e-15
Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 12/157 (7%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL 82
+++ A K +D+GCG G + +E+ + I + E + E+ ++ GL
Sbjct: 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLEL-AGRVRRVYAIDRNPEAISTTEMNLQRHGL 80
Query: 83 QDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141
D++ D + K D + G + +E + L G +++ I
Sbjct: 81 GDNVTLMEGDAPEALCKIPDIDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAI 135
Query: 142 SAPD-----QCYDEYRLSPGFIKEYIFPGGCLPSLGR 173
+C + + I G L
Sbjct: 136 LLETKFEAMECLRDLGFDVNITELNIARGRALDRGTM 172
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 70.8 bits (172), Expect = 3e-15
Identities = 38/227 (16%), Positives = 74/227 (32%), Gaps = 5/227 (2%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH 85
L++ A + +EVLD+ G G +A K L+E+ LK A + G Q
Sbjct: 7 LMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQQV 65
Query: 86 IRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145
+ ++ + H F +L G L+L SAP+
Sbjct: 66 EYVQGDAEQMPFTDERFHIVTCRIAAHH--FPNPASFVSEAYRVLKKGGQLLLVDNSAPE 123
Query: 146 QCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRK 205
D + + ++++ M +G +E L + C R
Sbjct: 124 --NDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFEDWCDRM 181
Query: 206 NFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKSRIIGDYQIVFSR 252
N ++ + L+ K ++ + G+ ++ +R
Sbjct: 182 NVTTEKKQELSDFIKSKPTEYYQKFKIVVEDGRVYSFRGESILMKAR 228
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.6 bits (166), Expect = 3e-14
Identities = 29/248 (11%), Positives = 56/248 (22%), Gaps = 51/248 (20%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVL----IEKARVSKGQEVLDIGCGWGTLAIEIVKQT 56
Y + + +M K ++ +G ++DIG G + +
Sbjct: 14 RDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDS 73
Query: 57 GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-------------------- 96
T ++ + E +++ + +L
Sbjct: 74 FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKR 133
Query: 97 --------------PKANKYDRIISCGMIEHVG--HDYMEEFFGCCESLLATHGLLVLQF 140
D +++ +E D SLL G LV
Sbjct: 134 VLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 193
Query: 141 ISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTL 200
Y + G V A+ +G +E L + Y T
Sbjct: 194 T----LRLPSYMVGKREFSCVAL------EKGEVEQAVL-DAGFDIEQLLHSPQSYSVTN 242
Query: 201 RCWRKNFM 208
Sbjct: 243 AANNGVCC 250
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 65.7 bits (159), Expect = 3e-13
Identities = 33/237 (13%), Positives = 69/237 (29%), Gaps = 22/237 (9%)
Query: 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ 83
+ LI +G VLD+GCG G ++ + +Y G+ ++E + A ++ R +
Sbjct: 15 ACLIRL-YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR 73
Query: 84 DHIRFYLCD--YRQLPKANKYDRIISCGMIEHVGHDYM--EEFFGCCESLLATHGLL--- 136
+ F D R + ++D I S + + L G
Sbjct: 74 FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133
Query: 137 ------VLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLC----- 185
+L+ D Y++ +++ + S
Sbjct: 134 VPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRM 193
Query: 186 VEHLENIG---IHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFK 239
V+ + +G + + + +G E Y F+
Sbjct: 194 VDGFKRLGLSLVERKGFIDFYEDEGRRNPELSKKMGLGCLTREESEVVGIYEVVVFR 250
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 62.5 bits (151), Expect = 4e-12
Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 6/119 (5%)
Query: 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC 91
+ V+D+ G G L++ I K I K+ + ++D + Y
Sbjct: 105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 164
Query: 92 DYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDE 150
D R P N DRI+ + EF S+ ++ E
Sbjct: 165 DNRDFPGENIADRILMGYV------VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPRE 217
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.5 bits (148), Expect = 1e-11
Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 3/132 (2%)
Query: 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ 83
+ + + K + VLD+GCG G L++ K K G+ S E L A +R L+
Sbjct: 25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQS-EILYQAMDIIRLNKLE 83
Query: 84 DHIRFYLCDYRQLPKANKYDRIISCGMIEHVGH--DYMEEFFGCCESLLATHGLLVLQFI 141
D I ++ + +I + + ++ LA G +
Sbjct: 84 DTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDIC 143
Query: 142 SAPDQCYDEYRL 153
+ +
Sbjct: 144 TISLVAVSDVNK 155
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 60.0 bits (144), Expect = 2e-11
Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 3/124 (2%)
Query: 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAG 81
+ ++I+ A VLDIG G G A+ + G+ ++E ++ A +E G
Sbjct: 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKG 62
Query: 82 LQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141
+++ + +D I H + + +L G +L
Sbjct: 63 VENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDH 120
Query: 142 SAPD 145
AP+
Sbjct: 121 YAPE 124
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 58.6 bits (140), Expect = 5e-11
Identities = 30/190 (15%), Positives = 55/190 (28%), Gaps = 17/190 (8%)
Query: 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD-- 84
V G VL CG + Q G G LSE ++ + E
Sbjct: 13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQ 71
Query: 85 ---------HIRFYLCDYRQLPKA--NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH 133
I + D+ L + + D E + E+L+
Sbjct: 72 GDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA 131
Query: 134 GLLVLQFISAPDQCYD--EYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLEN 191
+L + + + + ++ + + +G + +S+ GL LE
Sbjct: 132 CSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGGQDTLHSSARGL-KAGLER 190
Query: 192 IGIHYYQTLR 201
+ H Y R
Sbjct: 191 MDEHVYVLER 200
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.3 bits (143), Expect = 8e-11
Identities = 17/135 (12%), Positives = 48/135 (35%), Gaps = 14/135 (10%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAG 81
+S + ++ ++ KG +D+G G G ++ + GC G + ++ ++ E
Sbjct: 205 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELK 264
Query: 82 LQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141
+ + + N + + ++ ++ + E C+ +L + L
Sbjct: 265 KRCKLYG--------MRLNNVEFSLKKSFVD---NNRVAELIPQCDVILVNNFLFDEDLN 313
Query: 142 SAPDQCYDEYRLSPG 156
++ G
Sbjct: 314 KKVEKILQT--AKVG 326
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 56.9 bits (136), Expect = 2e-10
Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 6/148 (4%)
Query: 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKV 77
G R S ++ A+V LD+GCG G ++ + T + + E ++
Sbjct: 14 GLTRTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANG-YDVTAWDKNPASMANLE-RI 71
Query: 78 REAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137
+ A D+++ L D L +YD I+S ++ + + + G +
Sbjct: 72 KAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNL 131
Query: 138 LQFISAPDQCYDE----YRLSPGFIKEY 161
+ + G ++ Y
Sbjct: 132 IVAAMDTPDFPCTVGFPFAFKEGELRRY 159
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (139), Expect = 2e-10
Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 18/155 (11%)
Query: 1 MTYSCAI---------FKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIE 51
Y+ ++ E V+ +I++ +++ +D+G G G + ++
Sbjct: 109 QVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQ 168
Query: 52 IVKQTGC-KYTGITLSEEQLKYAEIKVREAGL--------QDHIRFYLCDYRQLPKANKY 102
+ T C + G+ ++ KYAE RE D+ +
Sbjct: 169 VAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI 228
Query: 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137
+ ++ + + G +V
Sbjct: 229 ANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIV 263
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.6 bits (133), Expect = 1e-09
Identities = 21/143 (14%), Positives = 41/143 (28%), Gaps = 6/143 (4%)
Query: 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ 83
+ + + K + VLD+G G G L + K K GI S +I L
Sbjct: 23 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKAN-KLD 81
Query: 84 DHIRFYLCDYRQLPKANKYDRIISCGMIEHVGH--DYMEEFFGCCESLLATHGLLVLQFI 141
+ ++ + II + + + + LA GL+
Sbjct: 82 HVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRA 141
Query: 142 S---APDQCYDEYRLSPGFIKEY 161
+ + + +
Sbjct: 142 TLYVTAIEDRQYKDYKIHWWENV 164
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.4 bits (127), Expect = 7e-09
Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 14/129 (10%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ-- 83
L+ R VLD+ CG G +I +V++ G T + S++ LKYA + +
Sbjct: 48 LLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPA 106
Query: 84 ------DHIRFYLCDYRQLPKANKYDRIISCGMIEHV-----GHDYMEEFFGCCESLLAT 132
+ + D I H+ S++
Sbjct: 107 FDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP 166
Query: 133 HGLLVLQFI 141
GLLV+
Sbjct: 167 GGLLVIDHR 175
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.3 bits (127), Expect = 8e-09
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 1/102 (0%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH 85
+I+ + K + VLD+GCG G L++ K G+ +S ++ A+ V G D
Sbjct: 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDK 88
Query: 86 IRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCE 127
I + II + +
Sbjct: 89 ITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYA 130
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.1 bits (121), Expect = 3e-08
Identities = 27/183 (14%), Positives = 66/183 (36%), Gaps = 20/183 (10%)
Query: 10 SEHEDLEVGQMRKVSVLIEK-ARVSKGQEVLDIGCGWGTLAIEIVKQT-------GCKYT 61
+EH+ ++ +K+ +I + ++L IG G G + ++I+ +
Sbjct: 15 TEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNE 74
Query: 62 GITLSEEQLKYAEIKVREAGL---------QDHIRFYLCDYRQLPKANKYDRIISCGMIE 112
+ S EQ+ + V + ++ Y + + K+D I M+
Sbjct: 75 VVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLY 134
Query: 113 HVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYR-LSPGFIKEYIFPGGCLPSL 171
+V + SLL T+ +++ +S ++ F ++ + L
Sbjct: 135 YV--KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDL 192
Query: 172 GRV 174
++
Sbjct: 193 TQM 195
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 49.7 bits (117), Expect = 9e-08
Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 2/181 (1%)
Query: 12 HEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLK 71
L Q + + VLD+G G G A I ++ + +
Sbjct: 58 DSLLACDQDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVD 117
Query: 72 YAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLA 131
A +++ GL D + D+ + I+S ++ HD + C E+L
Sbjct: 118 TARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEP 177
Query: 132 THGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLEN 191
+L+ + + ++E +F GG L + + S+GL VE +
Sbjct: 178 GGRILIHERDDLHENSFNEQFTELDLRM-LVFLGGALRTREKWDGLAA-SAGLVVEEVRQ 235
Query: 192 I 192
+
Sbjct: 236 L 236
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 1e-07
Identities = 21/141 (14%), Positives = 38/141 (26%), Gaps = 5/141 (3%)
Query: 29 KARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRF 88
A SKG VL++G G A ++ + ++ I ++ + +
Sbjct: 48 AAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLK 107
Query: 89 Y-LCDYRQLPKANKYDRIISCGMIEHVGH---DYMEEFFGCCESLLATHGLLVL-QFISA 143
D +D I+ LL G+L S
Sbjct: 108 GLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSW 167
Query: 144 PDQCYDEYRLSPGFIKEYIFP 164
+ +Y +E P
Sbjct: 168 GELMKSKYSDITIMFEETQVP 188
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (114), Expect = 2e-07
Identities = 25/174 (14%), Positives = 49/174 (28%), Gaps = 21/174 (12%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL 82
L + G V CG + G G+ +SE ++ + +
Sbjct: 34 KKHLDTFLKGKSGLRVFFPLCGKAVEM-KWFADRGHSVVGVEISELGIQEFFTEQNLSYS 92
Query: 83 Q----------------DHIRFYLCDYRQLPKANKYDR--IISCGMIEHVGHDYMEEFFG 124
+ +I Y C LP+ N I G + + + +
Sbjct: 93 EEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYAD 152
Query: 125 CCESLLATHGLLVLQFISAPDQCYDE--YRLSPGFIKEYIFPGGCLPSLGRVTS 176
SLL +L +S + + + I+ + L +V +
Sbjct: 153 TMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGKICNIRCLEKVDA 206
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 48.5 bits (115), Expect = 2e-07
Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 9/117 (7%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYAEIKVREA 80
S +I + + G ++L++G G G ++ I+ T + E+ LK A + E
Sbjct: 74 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF 133
Query: 81 GLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137
++R D D++ + + S++ +
Sbjct: 134 YDIGNVRTSRSDIADFI----SDQMYDAVIADIPDPWNH---VQKIASMMKPGSVAT 183
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 48.7 bits (115), Expect = 2e-07
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 3/117 (2%)
Query: 23 VSVLIEKA-RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAG 81
VS L+ +++K ++D GCG+G L + ++ + + AE +
Sbjct: 15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 74
Query: 82 LQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138
L F D ++ +KYD I + H E + G ++
Sbjct: 75 LPYDSEFLEGDATEIELNDKYDIAICHAFLLH--MTTPETMLQKMIHSVKKGGKIIC 129
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 46.6 bits (109), Expect = 6e-07
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 1/114 (0%)
Query: 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD 84
+L+E V K ++LD+GCG+G + I + + E
Sbjct: 43 ILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNY 102
Query: 85 HIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138
IR D + K KY++II+ I G + + + LL +G + +
Sbjct: 103 DIRVVHSDLYENVKDRKYNKIITNPPI-RAGKEVLHRIIEEGKELLKDNGEIWV 155
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 46.6 bits (110), Expect = 9e-07
Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 9/121 (7%)
Query: 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYAEIK 76
+ S + V +G ++D G G G + + + G K EE K AE
Sbjct: 88 YPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESN 147
Query: 77 VREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLL 136
+ + GL + + + D + +D + V + C L G
Sbjct: 148 LTKWGLIERVTIKVRDISE-----GFDEKDVDALFLDVPD--PWNYIDKCWEALKGGGRF 200
Query: 137 V 137
Sbjct: 201 A 201
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.2 bits (106), Expect = 2e-06
Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93
+G+ V D+G G G L+ + + + + +E + + E + + ++ D
Sbjct: 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKF--KVFIGDV 103
Query: 94 RQLPKANKYDRIISCGMIEHVGHDYMEEFF 123
+ + D +I F
Sbjct: 104 SEFNS--RVDIVIMNPPFGSQRKHADRPFL 131
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 45.3 bits (106), Expect = 2e-06
Identities = 36/211 (17%), Positives = 72/211 (34%), Gaps = 17/211 (8%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93
+ +L++G G + ++ T + SEE + +A+ ++ +D I + +
Sbjct: 20 RPGNLLELGSFKGDFTSRL-QEHFNDITCVEASEEAISHAQGRL-----KDGITYIHSRF 73
Query: 94 RQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA--PDQCYDEY 151
+YD I+ ++EH+ D + + LA G L L +A +
Sbjct: 74 EDAQLPRRYDNIVLTHVLEHI-DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVK 132
Query: 152 RLSPGFIKEYIFPGGCLPSLGRVT----SAMTSSSGLCVEHLENIGIHYYQTLRCWRKNF 207
S +GL V + I W +
Sbjct: 133 MGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGIFFKAL-ANFQWDQIL 191
Query: 208 MGKQSEILALGFNEKFIRTWEYYFDYCAASF 238
Q++IL+ + + + + Y D CA+ F
Sbjct: 192 ---QTDILSKEYLDGCYQLGQQYPDLCASIF 219
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 45.0 bits (105), Expect = 3e-06
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 1/130 (0%)
Query: 13 EDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKY 72
D++ + + + LD+ CG G L + + + LS+E L
Sbjct: 16 ADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSE 74
Query: 73 AEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLAT 132
AE K R GL+ + + + + D ++++F + L
Sbjct: 75 AENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKE 134
Query: 133 HGLLVLQFIS 142
G+ + S
Sbjct: 135 GGVFIFDINS 144
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.8 bits (103), Expect = 9e-06
Identities = 22/148 (14%), Positives = 53/148 (35%), Gaps = 14/148 (9%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC--KYTGITLSEEQLKYAEIKVREA 80
+ ++ + + G VL+ G G G L + +++ G + + ++A V
Sbjct: 85 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGC 144
Query: 81 GLQ--DHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137
Q D+ R + D DR + M+ + ++ LL G+L+
Sbjct: 145 YGQPPDNWRLVVSDLADSELPDGSVDRAV-LDMLAP--WEVLDA----VSRLLVAGGVLM 197
Query: 138 --LQFISAPDQCYDEYRLSPGFIKEYIF 163
+ ++ + + R + + +
Sbjct: 198 VYVATVTQLSRIVEALRAKQCWTEPRAW 225
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 1e-05
Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 22/127 (17%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC--KYTGITLSEEQLKYAEIKVREAGLQ 83
++ ++ G VL+ G G G +++ + K G + + ++ A+ +
Sbjct: 90 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 149
Query: 84 ----------DHIRFYLCDYRQLP---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLL 130
D++ F D K+ +D + M+ H + F+ L
Sbjct: 150 WKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVA-LDMLNP--HVTLPVFY----PHL 202
Query: 131 ATHGLLV 137
G+
Sbjct: 203 KHGGVCA 209
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 42.0 bits (97), Expect = 2e-05
Identities = 24/202 (11%), Positives = 55/202 (27%), Gaps = 13/202 (6%)
Query: 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC 91
+ K +VLD+ CG G + + + K E +
Sbjct: 35 MKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGD 92
Query: 92 DYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEY 151
+ + +D +I I H + + F +L G ++ F +
Sbjct: 93 ARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLK 152
Query: 152 RLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQ 211
+ + + +P T ++ + W K +
Sbjct: 153 ESL--VVGQKYWISKVIPDQEERTVV---------IEFKSEQDSFRVRFNVWGKTGVELL 201
Query: 212 SEILALGFNEKFIRTWEYYFDY 233
+++ E+ + + Y Y
Sbjct: 202 AKLYFTKEAEEKVGNYSYLTVY 223
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 41.5 bits (96), Expect = 5e-05
Identities = 23/127 (18%), Positives = 42/127 (33%)
Query: 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVR 78
+ + S + VLD+G G G + I + + + A +
Sbjct: 66 EDLAYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFA 125
Query: 79 EAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138
+AGL D + D+ + ++S ++ D + GC +L LLVL
Sbjct: 126 DAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVL 185
Query: 139 QFISAPD 145
Sbjct: 186 DRADVEG 192
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 41.6 bits (96), Expect = 5e-05
Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 4/123 (3%)
Query: 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVR 78
++ V + ++ + + VLD+ CG G +E+ ++ + G+ L EE L+ A K +
Sbjct: 26 EIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAK 84
Query: 79 EAGLQDHIRFYLCDYRQLPKANKYD-RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137
E L+ N++D + I + + + + F L G+ +
Sbjct: 85 ERNLKIEFLQGDVLEIAFK--NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142
Query: 138 LQF 140
F
Sbjct: 143 TDF 145
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 41.3 bits (96), Expect = 5e-05
Identities = 12/120 (10%), Positives = 35/120 (29%), Gaps = 4/120 (3%)
Query: 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDH 85
++ + + ++L +G GT + I + ++ E +++
Sbjct: 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE---REN 123
Query: 86 IRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145
I L D + + + + + E + L G ++ +
Sbjct: 124 IIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSI 183
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Score = 40.5 bits (93), Expect = 9e-05
Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 4/138 (2%)
Query: 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEI---VKQTGCKYTGITLSEEQLKYAEI 75
+ ++ + V+ V D+GC G + + Q K GI S+ ++
Sbjct: 24 NIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQ 83
Query: 76 KVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGL 135
+ + + D R + N +I ++ + + L +G+
Sbjct: 84 HIAAYHSEIPVEILCNDIRHVEIKNASM-VILNFTLQFLPPEDRIALLTKIYEGLNPNGV 142
Query: 136 LVLQFISAPDQCYDEYRL 153
LVL + + L
Sbjct: 143 LVLSEKFRFEDTKINHLL 160
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 40.3 bits (93), Expect = 1e-04
Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 14/126 (11%)
Query: 38 VLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL 96
+++G G G + KQ Y GI + + L YA + +I+ D L
Sbjct: 35 HVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYA-LDKVLEVGVPNIKLLWVDGSDL 93
Query: 97 PKANKYDRIISCGMIEHVGH---------DYMEEFFGCCESLLATHGLLVLQFISAPDQC 147
+ I + + F + +L +G + ++
Sbjct: 94 TDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEI---HFKTDNRG 150
Query: 148 YDEYRL 153
EY L
Sbjct: 151 LFEYSL 156
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 39.7 bits (92), Expect = 1e-04
Identities = 15/112 (13%), Positives = 34/112 (30%), Gaps = 4/112 (3%)
Query: 32 VSKGQEVLDIGCGWGTLAIEIVK-QTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90
+ + VL +G GT + + S + + +++I L
Sbjct: 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL---ELVRERNNIIPLL 110
Query: 91 CDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142
D + K + + + + +E E L G +V+ +
Sbjct: 111 FDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKA 162
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 38.9 bits (90), Expect = 2e-04
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93
G+ V+D G G G LA T + + ++ A+ + F + D
Sbjct: 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC------GGVNFMVADV 101
Query: 94 RQLPKANKYDRIIS 107
++ KYD I
Sbjct: 102 SEISG--KYDTWIM 113
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 6e-04
Identities = 27/135 (20%), Positives = 54/135 (40%)
Query: 14 DLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYA 73
D+ + L E + LD G G G + ++ + + ++E+ L A
Sbjct: 40 DINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQA 99
Query: 74 EIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH 133
+ + E G + F P+ + YD I +I H+ ++ EF C+ L +
Sbjct: 100 KTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN 159
Query: 134 GLLVLQFISAPDQCY 148
G++V++ A +
Sbjct: 160 GIIVIKDNMAQEGVI 174
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Score = 37.2 bits (85), Expect = 0.001
Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 8/115 (6%)
Query: 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90
+ G +VLD+G G G LAI K G K G+ + L AE + G+ RF
Sbjct: 117 HLRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGV--RPRFLE 173
Query: 91 CDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145
+D +++ E L G +L I
Sbjct: 174 GSLEAALPFGPFDLLVANLYAEL-----HAALAPRYREALVPGGRALLTGILKDR 223
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 36.6 bits (84), Expect = 0.001
Identities = 22/115 (19%), Positives = 34/115 (29%), Gaps = 7/115 (6%)
Query: 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC--KYTGITLSEEQLKYAEIKVREAGLQD 84
++ + G+ VL +G GT A + G K GI S L+ V E
Sbjct: 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIV 125
Query: 85 HIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138
I + K D I ++ E L G ++
Sbjct: 126 PILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDN----AEVYLKRGGYGMI 176
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 36.5 bits (83), Expect = 0.002
Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 2/136 (1%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH 85
I LD G G G + ++ + + + L+ A+ ++ +
Sbjct: 85 FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKF 144
Query: 86 IRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145
I + P N YD I+ ++ +FF C+ L +G + + +
Sbjct: 145 ILASMETATLPP--NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTG 202
Query: 146 QCYDEYRLSPGFIKEY 161
+ + +
Sbjct: 203 DRFLVDKEDSSLTRSD 218
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Score = 36.0 bits (82), Expect = 0.002
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 9/111 (8%)
Query: 38 VLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL 96
+++G G G + KQ Y GI L + + A KV+++ Q+ +
Sbjct: 33 HIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT 92
Query: 97 PKANKYDRIISC--------GMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139
+ F E ++ G + +
Sbjct: 93 DVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.002
Identities = 12/102 (11%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH 85
+I+KA + VL++G G G + ++++++ K L + +V+ +
Sbjct: 13 IIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASK 71
Query: 86 IRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCE 127
++ + D + + + + ++ +
Sbjct: 72 LQVLVGDVLKTDLPFFDTCVANLPY--QISSPFVFKLLLHRP 111
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.6 bits (81), Expect = 0.004
Identities = 24/177 (13%), Positives = 44/177 (24%), Gaps = 44/177 (24%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL---QDHIRFYL 90
G+ ++DIG G + T E + ++E +
Sbjct: 54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHA 113
Query: 91 CD---------------------------------YRQLPKANKYDRIISCGMIEHVGHD 117
C P D ++S +E V D
Sbjct: 114 CLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPD 173
Query: 118 Y--MEEFFGCCESLLATHGLLVLQ------FISAPDQCYDEYRLSPGFIKEYIFPGG 166
+ +LL G L+L + A + +S ++E + G
Sbjct: 174 LASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSG 230
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 272 | |||
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 100.0 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 100.0 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 100.0 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 100.0 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.95 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.94 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.93 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.9 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.89 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.88 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.88 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.87 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.86 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.86 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.86 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.85 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.84 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.83 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.83 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.81 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.81 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.81 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.8 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.8 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.79 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.79 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.77 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.77 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.75 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.75 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.73 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.73 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.72 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.71 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.71 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.71 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.69 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.69 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.69 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.68 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.68 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.66 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.65 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.64 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.64 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.63 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.62 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.61 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.61 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.61 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.61 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.59 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.57 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.55 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.52 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.5 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.5 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.49 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.44 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.44 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.43 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.43 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.36 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.35 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.32 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.32 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.32 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.29 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.28 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.28 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.23 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.21 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.2 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.14 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 99.09 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 99.06 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.98 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.95 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.93 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.92 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.91 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.88 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.86 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.85 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.84 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.83 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.81 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.76 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.75 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.75 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.73 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.73 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.73 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.67 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.62 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.58 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.41 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.35 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.25 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.24 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 98.23 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.08 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 98.07 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.94 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.84 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.8 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.79 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.77 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.75 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.72 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.68 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.6 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.53 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.49 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.33 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 97.2 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 97.2 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.18 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.18 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.15 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 97.09 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.02 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.0 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.95 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.92 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.88 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.78 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.68 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.63 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.53 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.44 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.3 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.29 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 96.23 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.1 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.09 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 96.02 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 96.0 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.5 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.5 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.38 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 95.33 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.24 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 94.99 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 94.53 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 94.31 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 94.12 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 94.05 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 93.78 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 92.64 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 92.18 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 91.54 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 91.24 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 90.99 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 90.95 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 90.79 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 90.79 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 90.46 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 90.28 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.09 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 90.09 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 89.85 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 89.67 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 89.65 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 89.47 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 88.89 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 88.5 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 88.33 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 87.93 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 87.88 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 87.62 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 87.29 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 86.97 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 86.55 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 86.0 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 85.97 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 85.86 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 83.48 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 83.28 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 83.13 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 82.57 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 82.14 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 82.07 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 80.54 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 80.24 |
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=3.7e-53 Score=357.55 Aligned_cols=252 Identities=27% Similarity=0.461 Sum_probs=228.5
Q ss_pred CcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 024096 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272)
Q Consensus 1 ~~y~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272)
|+||||+|++++++|++||.++++.+++++++++|++|||||||+|+++..++++.+++|+|+|+|+.+++.|++++++.
T Consensus 19 m~YS~~~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~ 98 (280)
T d2fk8a1 19 RTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASI 98 (280)
T ss_dssp CCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTS
T ss_pred CcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999887899999999999999999999999
Q ss_pred CCCCCeEEEEcccCCCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCcccc---------c
Q 024096 81 GLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDE---------Y 151 (272)
Q Consensus 81 g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---------~ 151 (272)
++..++.+...|..+.+ ++||.|++.++++|+++++...++++++++|||||++++++++..+..... .
T Consensus 99 ~l~~~~~~~~~d~~~~~--~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~ 176 (280)
T d2fk8a1 99 DTNRSRQVLLQGWEDFA--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFET 176 (280)
T ss_dssp CCSSCEEEEESCGGGCC--CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHH
T ss_pred ccccchhhhhhhhhhhc--cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhccccccccc
Confidence 99888999999987765 789999999999999988899999999999999999999887654432111 1
Q ss_pred cCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHH
Q 024096 152 RLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYF 231 (272)
Q Consensus 152 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~ 231 (272)
.....|+.+|++|++.+|+.+++.+.+ +++||++.++++++.||.+|+..|+++|.++++++..+++ +.+.++|+.||
T Consensus 177 ~~~~dfI~kyifPgg~lPS~~~l~~~~-e~aGf~v~~~~~~~~hYa~TL~~W~~~f~~~~~~i~~~~~-~~~~r~w~~yl 254 (280)
T d2fk8a1 177 ARFIKFIVTEIFPGGRLPSTEMMVEHG-EKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTS-EEVYNRYMKYL 254 (280)
T ss_dssp HHHHHHHHHHTSTTCCCCCHHHHHHHH-HHTTCBCCCCEECHHHHHHHHHHHHHHHHHTHHHHHHHSC-HHHHHHHHHHH
T ss_pred ccccchhhhhccCCCcccchHhhhhhH-HhhccccceeeecccCHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence 123478999999999999999998654 5699999999999999999999999999999999999866 55667899999
Q ss_pred HHHHHHHhcCCccEEEEEEEeCCCC
Q 024096 232 DYCAASFKSRIIGDYQIVFSRPGKV 256 (272)
Q Consensus 232 ~~~~~~f~~g~~~~~~~~~~k~~~~ 256 (272)
.+|+++|+.|.++++|+++.|||..
T Consensus 255 ~~c~~~F~~~~~~~~q~~~~kpg~~ 279 (280)
T d2fk8a1 255 RGCEHYFTDEMLDCSLVTYLKPGAA 279 (280)
T ss_dssp HHHHHHHHTTSCEEEEEEEECTTCC
T ss_pred HHHHHHHhCCCccEEEEEEEcCCcC
Confidence 9999999999999999999999864
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=3e-52 Score=351.89 Aligned_cols=248 Identities=29% Similarity=0.522 Sum_probs=227.2
Q ss_pred CcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 024096 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272)
Q Consensus 1 ~~y~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272)
|+||||||++++++|++||.++++.+++++++++|++|||||||+|+++.++++..+++|+|+++|+.+++.|++++...
T Consensus 29 ~~YS~g~~~~~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~ 108 (285)
T d1kpga_ 29 QTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANS 108 (285)
T ss_dssp CCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTC
T ss_pred CcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred CCCCCeEEEEcccCCCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccc---------cc
Q 024096 81 GLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYD---------EY 151 (272)
Q Consensus 81 g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---------~~ 151 (272)
|+.+++++..+|..+++ ++||.|++.++++|++.++...+++++.++|||||++++++++....... ..
T Consensus 109 g~~~~v~~~~~d~~~~~--~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~ 186 (285)
T d1kpga_ 109 ENLRSKRVLLAGWEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTF 186 (285)
T ss_dssp CCCSCEEEEESCGGGCC--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHH
T ss_pred hhhhhhHHHHhhhhccc--ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhh
Confidence 99999999999998876 78999999999999998888999999999999999999998875432111 11
Q ss_pred cCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHH
Q 024096 152 RLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYF 231 (272)
Q Consensus 152 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~ 231 (272)
.....|+.+|+||++.+|+.+++.. +++++||.|.++++++.||.+|+..|+++|.++++++.+++ ++.+.++|..|+
T Consensus 187 ~~~~~fi~kyiFpgg~lPsl~~~~~-~~e~agf~v~~~~~~~~hYarTl~~W~~~f~~~~~ei~~~~-~~~~~rrw~~Yl 264 (285)
T d1kpga_ 187 ARFLKFIVTEIFPGGRLPSIPMVQE-CASANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQAIALQ-SEEVYERYMKYL 264 (285)
T ss_dssp HHHHHHHHHHTSTTCCCCCHHHHHH-HHHTTTCEEEEEEECHHHHHHHHHHHHHHHHHTHHHHHHHS-CHHHHHHHHHHH
T ss_pred hchhhHHHHHhccCCCCCChhhHHH-HHHHhchhhcccccchhhHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 2245789999999999999999875 45679999999999999999999999999999999999884 577778999999
Q ss_pred HHHHHHHhcCCccEEEEEEEe
Q 024096 232 DYCAASFKSRIIGDYQIVFSR 252 (272)
Q Consensus 232 ~~~~~~f~~g~~~~~~~~~~k 252 (272)
.+|+++|+.|.++++|++++|
T Consensus 265 ~~c~~~F~~g~~~v~q~~~~k 285 (285)
T d1kpga_ 265 TGCAEMFRIGYIDVNQFTCQK 285 (285)
T ss_dssp HHHHHHHHTTSEEEEEEEEEC
T ss_pred HHHHHHHHCCCCeEEEEEEEC
Confidence 999999999999999999997
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=2.8e-52 Score=352.99 Aligned_cols=248 Identities=29% Similarity=0.486 Sum_probs=226.3
Q ss_pred CcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 024096 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272)
Q Consensus 1 ~~y~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272)
|+||||+|++++++|++||.++++.+++++++++|++|||||||+|+++.+++++.+++|+|+++|+++++.+++++...
T Consensus 28 ~~YS~~~~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~ 107 (291)
T d1kpia_ 28 MTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEV 107 (291)
T ss_dssp CCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHS
T ss_pred CCeeeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999887899999999999999999999999
Q ss_pred CCCCCeEEEEcccCCCCCCCCccEEEEechhhccCh-------hhHHHHHHHHHhcCccCcEEEEEeecCCCCcccc---
Q 024096 81 GLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGH-------DYMEEFFGCCESLLATHGLLVLQFISAPDQCYDE--- 150 (272)
Q Consensus 81 g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--- 150 (272)
|+.+++.+...|.... +++||.|+|.++++|+++ ++.+.+++++.++|||||++++++++.++..+..
T Consensus 108 ~l~~~v~~~~~d~~~~--~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~ 185 (291)
T d1kpia_ 108 DSPRRKEVRIQGWEEF--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELG 185 (291)
T ss_dssp CCSSCEEEEECCGGGC--CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHT
T ss_pred ccchhhhhhhhccccc--ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhcc
Confidence 9999999999987644 478999999999999975 5678999999999999999999999876653221
Q ss_pred ------ccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHH
Q 024096 151 ------YRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFI 224 (272)
Q Consensus 151 ------~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 224 (272)
......|+.+|+||++.+|+..++... .+++||+|.++++++.||.+|+..|+++|.++++++.++ +++.+.
T Consensus 186 ~~~p~~~~~~~~fi~kyiFpgg~lps~~~~~~~-~e~~gl~v~~~~~~~~hYa~TL~~W~~~f~~~~~ei~~l-~g~~~~ 263 (291)
T d1kpia_ 186 LTSPMSLLRFIKFILTEIFPGGRLPRISQVDYY-SSNAGWKVERYHRIGANYVPTLNAWADALQAHKDEAIAL-KGQETC 263 (291)
T ss_dssp CCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHH-HHHHTCEEEEEEECGGGHHHHHHHHHHHHHHTHHHHHHH-HHHHHH
T ss_pred CCCchhhcccchHHHHHhcCCCCCCCHHHHHhh-hcccccccceeeeccccHHHHHHHHHHHHHHHHHHHHHh-cChHHH
Confidence 122346899999999999999998754 556999999999999999999999999999999999988 457899
Q ss_pred HHHHHHHHHHHHHHhcCCccEEEEEEEe
Q 024096 225 RTWEYYFDYCAASFKSRIIGDYQIVFSR 252 (272)
Q Consensus 225 ~~w~~~~~~~~~~f~~g~~~~~~~~~~k 252 (272)
|+|+.|+.+|+++|+.|.++.+|++++|
T Consensus 264 r~W~~yl~~ce~~F~~~~~~v~q~~l~K 291 (291)
T d1kpia_ 264 DIYMHYLRGCSDLFRDKYTDVCQFTLVK 291 (291)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 9999999999999999999999999987
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=100.00 E-value=2e-31 Score=225.02 Aligned_cols=242 Identities=17% Similarity=0.234 Sum_probs=194.0
Q ss_pred cccCCC--CCCHHHHHHHHHHHHHHHc----CCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH
Q 024096 6 AIFKSE--HEDLEVGQMRKVSVLIEKA----RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVRE 79 (272)
Q Consensus 6 ~~~~~~--~~~l~~aq~~~~~~l~~~l----~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~ 79 (272)
|+|.++ ..++.+++.+..+.+++.+ ++.++.+|||||||+|.++..++++++++|+|+|+|+.+++.|+++...
T Consensus 33 G~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~ 112 (282)
T d2o57a1 33 GLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQ 112 (282)
T ss_dssp CCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH
T ss_pred eecCCCCCCcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccc
Confidence 677644 4577888877776666554 6889999999999999999999987788999999999999999999999
Q ss_pred cCCCCCeEEEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhh
Q 024096 80 AGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFI 158 (272)
Q Consensus 80 ~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 158 (272)
.|+.++++++++|+.+++ ++++||+|++..+++|++ ++..+++++.++|||||++++.++...+..... ....+.
T Consensus 113 ~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~ 188 (282)
T d2o57a1 113 AGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSP--DKLKVFQECARVLKPRGVMAITDPMKEDGIDKS--SIQPIL 188 (282)
T ss_dssp HTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG--GGHHHH
T ss_pred ccccccccccccccccccccccccchhhccchhhhcc--CHHHHHHHHHHhcCCCcEEEEEEeecCCCCchh--HHHHHH
Confidence 999889999999999999 778999999999999995 568999999999999999999887755432211 112233
Q ss_pred hhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHHHHHHHHH
Q 024096 159 KEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASF 238 (272)
Q Consensus 159 ~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~f 238 (272)
..+.. ..+.+.+++. .+++++||..+.+.+.+.++..++..|...+..+..++... ....+...+...+..+....
T Consensus 189 ~~~~~--~~~~s~~~~~-~~l~~~Gf~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~ 264 (282)
T d2o57a1 189 DRIKL--HDMGSLGLYR-SLAKECGLVTLRTFSRPDSLVHHYSKVKAELIKRSSEIASF-CSPEFQANMKRGLEHWIEGG 264 (282)
T ss_dssp HHHTC--SSCCCHHHHH-HHHHHTTEEEEEEEECHHHHHHHHHHHHHHHHHTHHHHTTT-SCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcc--CCCCCHHHHH-HHHHHcCCceEEEEECcHhHHHHHHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHH
Confidence 33322 2456777776 45567999999999988888778888888887777766554 56666666666666667778
Q ss_pred hcCCccEEEEEEEeCCC
Q 024096 239 KSRIIGDYQIVFSRPGK 255 (272)
Q Consensus 239 ~~g~~~~~~~~~~k~~~ 255 (272)
..|.++++.++++||..
T Consensus 265 ~~g~~~~g~~varK~~~ 281 (282)
T d2o57a1 265 RAGKLTWGGMLFRKSDK 281 (282)
T ss_dssp HTTSEEEEEEEEEESSC
T ss_pred hCCeeEEEEEEEEcCCC
Confidence 89999999999999964
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.95 E-value=1.5e-27 Score=194.94 Aligned_cols=177 Identities=19% Similarity=0.231 Sum_probs=134.8
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANK 101 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~ 101 (272)
+..+++.++++++++|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...+. ++++++++|+.+++ ++++
T Consensus 4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~~~~~~ 81 (231)
T d1vl5a_ 4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDER 81 (231)
T ss_dssp HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTC
T ss_pred HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhccccccc-ccccccccccccccccccc
Confidence 567889999999999999999999999999986 78999999999999999999998887 48999999999998 7789
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhc-ccCCCCCCCHHHHHHHhhc
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEY-IFPGGCLPSLGRVTSAMTS 180 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~l~~ 180 (272)
||+|++..+++|+ +++..+++++.++|||||++++.++..+..... ......+... ........+..++.+ +.+
T Consensus 82 fD~v~~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 156 (231)
T d1vl5a_ 82 FHIVTCRIAAHHF--PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAF--DVFYNYVEKERDYSHHRAWKKSDWLK-MLE 156 (231)
T ss_dssp EEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHH--HHHHHHHHHHHCTTCCCCCBHHHHHH-HHH
T ss_pred ccccccccccccc--CCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhcccCcccCCCHHHHHH-HHH
Confidence 9999999999999 456899999999999999999988776543211 1111112121 122234456677764 455
Q ss_pred CCCcEEEEEEecCccHHHHHHHHHHHHH
Q 024096 181 SSGLCVEHLENIGIHYYQTLRCWRKNFM 208 (272)
Q Consensus 181 ~~Gf~v~~~~~~~~~~~~~~~~~~~~~~ 208 (272)
++||.+++++.+...+ .+..|..++.
T Consensus 157 ~aGf~~~~~~~~~~~~--~~~~~~~~~~ 182 (231)
T d1vl5a_ 157 EAGFELEELHCFHKTF--IFEDWCDRMN 182 (231)
T ss_dssp HHTCEEEEEEEEEEEE--EHHHHHHHTT
T ss_pred HCCCEEEEEEEeecCC--chHHHHHHhc
Confidence 6999988766543221 2344655544
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1.1e-26 Score=191.72 Aligned_cols=170 Identities=17% Similarity=0.115 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC
Q 024096 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL 96 (272)
Q Consensus 17 ~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 96 (272)
..+..+++.+.+.+.+.||++|||||||+|..+..++++.+++|+|+|+|+.+++.|+++....|+.++++++++|+.++
T Consensus 16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~ 95 (245)
T d1nkva_ 16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 95 (245)
T ss_dssp SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence 45666788899999999999999999999999999998777899999999999999999999999988999999999998
Q ss_pred CCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHH
Q 024096 97 PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTS 176 (272)
Q Consensus 97 ~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 176 (272)
.++++||+|++..+++|++ ++..++++++++|||||++++.+........... ..... ...+...+.+...+..
T Consensus 96 ~~~~~fD~v~~~~~~~~~~--d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~ 169 (245)
T d1nkva_ 96 VANEKCDVAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEE--IAQAC--GVSSTSDFLTLPGLVG 169 (245)
T ss_dssp CCSSCEEEEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH--HHHTT--TCSCGGGSCCHHHHHH
T ss_pred cccCceeEEEEEehhhccC--CHHHHHHHHHHHcCcCcEEEEEeccccCCCChHH--HHHHh--ccCCCcccCCHHHHHH
Confidence 7778999999999999995 4589999999999999999998766433211100 00000 1112223456677764
Q ss_pred HhhcCCCcEEEEEEecC
Q 024096 177 AMTSSSGLCVEHLENIG 193 (272)
Q Consensus 177 ~l~~~~Gf~v~~~~~~~ 193 (272)
+.+++||.++......
T Consensus 170 -~~~~aG~~~v~~~~~~ 185 (245)
T d1nkva_ 170 -AFDDLGYDVVEMVLAD 185 (245)
T ss_dssp -HHHTTTBCCCEEEECC
T ss_pred -HHHHcCCEEEEEEeCC
Confidence 4556999887766554
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.93 E-value=1e-25 Score=184.66 Aligned_cols=179 Identities=20% Similarity=0.243 Sum_probs=136.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KA 99 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~ 99 (272)
..++.+++.++++||.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...+++ ++.++++|+++++ ++
T Consensus 3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~d~~~~~~~~ 80 (234)
T d1xxla_ 3 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFPD 80 (234)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSCT
T ss_pred hHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhcccccc-cccccccccccccccc
Confidence 45677899999999999999999999999999986 679999999999999999999988874 7999999999998 77
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCC-CCCCCHHHHHHHh
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPG-GCLPSLGRVTSAM 178 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~l 178 (272)
++||+|++..+++|+ .++..+++++.++|||||++++.++..+..... ......+.....+. ....+..++. .+
T Consensus 81 ~~fD~v~~~~~l~~~--~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 155 (234)
T d1xxla_ 81 DSFDIITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPEDPVL--DEFVNHLNRLRDPSHVRESSLSEWQ-AM 155 (234)
T ss_dssp TCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHH--HHHHHHHHHHHCTTCCCCCBHHHHH-HH
T ss_pred cccceeeeeceeecc--cCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHH--HHHHHHHHhhCCCcccccCCHHHHH-HH
Confidence 899999999999999 456899999999999999999987765543210 11111122222222 2233555665 45
Q ss_pred hcCCCcEEEEEEecCccHHHHHHHHHHHHH
Q 024096 179 TSSSGLCVEHLENIGIHYYQTLRCWRKNFM 208 (272)
Q Consensus 179 ~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~ 208 (272)
.+++||.+.++..+... ..+..|..+..
T Consensus 156 ~~~~gf~~~~~~~~~~~--~~~~~w~~~~~ 183 (234)
T d1xxla_ 156 FSANQLAYQDIQKWNLP--IQYDSWIKRGG 183 (234)
T ss_dssp HHHTTEEEEEEEEEEEE--EEHHHHHHHHT
T ss_pred HHHCCCceeEEEEeeCc--cCHHHHHHHcC
Confidence 55799998877664332 13456665543
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.90 E-value=4e-23 Score=170.96 Aligned_cols=167 Identities=18% Similarity=0.242 Sum_probs=132.0
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKY 102 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~f 102 (272)
+.+++.+++.+..+|||||||+|.++..++++ ++.+++++|+ +.+++.+++++...++.++++++.+|+.+.. +.+|
T Consensus 70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~-~~~~ 147 (253)
T d1tw3a2 70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL-PRKA 147 (253)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC-SSCE
T ss_pred HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc-ccch
Confidence 56778888888899999999999999999998 7899999998 6789999999999999889999999986533 3579
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCC
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSS 182 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~ 182 (272)
|+|++..++||+++++...++++++++|||||++++.+...+...........-.+......++...+.+++. .+++++
T Consensus 148 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~-~ll~~A 226 (253)
T d1tw3a2 148 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWD-GLAASA 226 (253)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHH-HHHHHT
T ss_pred hheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHH-HHHHHC
Confidence 9999999999999888889999999999999999998766443321111000111122233456667888887 456679
Q ss_pred CcEEEEEEecC
Q 024096 183 GLCVEHLENIG 193 (272)
Q Consensus 183 Gf~v~~~~~~~ 193 (272)
||+++++..+.
T Consensus 227 Gf~~~~v~~~~ 237 (253)
T d1tw3a2 227 GLVVEEVRQLP 237 (253)
T ss_dssp TEEEEEEEEEE
T ss_pred CCeEEEEEECC
Confidence 99998887753
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.89 E-value=2.8e-22 Score=162.41 Aligned_cols=130 Identities=20% Similarity=0.357 Sum_probs=109.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEE
Q 024096 9 KSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRF 88 (272)
Q Consensus 9 ~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~ 88 (272)
.+......+.+...+..++++. ++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....+. ++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~ 88 (226)
T d1ve3a1 13 TDINSQEYRSRIETLEPLLMKY-MKKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRES--NVEF 88 (226)
T ss_dssp TCTTSHHHHHHHHHHHHHHHHS-CCSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEE
T ss_pred HHhhHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhccccc--cccc
Confidence 3333444445555566666652 457789999999999999999986 88999999999999999999888764 6788
Q ss_pred EEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 89 YLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 89 ~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+++|+.+++ ++++||+|++..+++|++++++..+++++.++|||||++++...+
T Consensus 89 ~~~d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 89 IVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccccccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 999999998 778999999999999998888899999999999999999987654
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=5.6e-23 Score=166.83 Aligned_cols=148 Identities=20% Similarity=0.293 Sum_probs=117.8
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEec
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCG 109 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~ 109 (272)
...++.+|||||||+|.++..+++....+|+|+|+|+.+++.|++++...+. .+++++++|+++++ ++++||+|++..
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-ccccccccccccccccccccccccccc
Confidence 4567789999999999999988766567999999999999999999877665 37899999999988 678999999999
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEE
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHL 189 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~ 189 (272)
+++|+++++...++++++++|||||.+++.+...+....... . ......+.+.+. .+.+++||+++..
T Consensus 136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~--~---------~~~~~~~~~~~~-~l~~~aGf~ii~~ 203 (222)
T d2ex4a1 136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD--V---------DSSVCRDLDVVR-RIICSAGLSLLAE 203 (222)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEET--T---------TTEEEEBHHHHH-HHHHHTTCCEEEE
T ss_pred ccccchhhhhhhHHHHHHHhcCCcceEEEEEccccccccccc--C---------CceeeCCHHHHH-HHHHHcCCEEEEE
Confidence 999999887789999999999999999998876544321100 0 011223566665 5566799998877
Q ss_pred Ee
Q 024096 190 EN 191 (272)
Q Consensus 190 ~~ 191 (272)
+.
T Consensus 204 ~~ 205 (222)
T d2ex4a1 204 ER 205 (222)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.88 E-value=3.1e-22 Score=165.55 Aligned_cols=163 Identities=14% Similarity=0.127 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC
Q 024096 15 LEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR 94 (272)
Q Consensus 15 l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~ 94 (272)
+..++......+++.+...++.+|||+|||+|.++..++.....+|+++|+|+.+++.|+++.... ++++++++|++
T Consensus 74 ~~~~d~~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~ 150 (254)
T d1xtpa_ 74 VHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASME 150 (254)
T ss_dssp GHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGG
T ss_pred cchhhHHHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEcccc
Confidence 345666667788889888888999999999999999888764568999999999999999886543 46899999999
Q ss_pred CCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHH
Q 024096 95 QLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGR 173 (272)
Q Consensus 95 ~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 173 (272)
+++ ++++||+|++..+++|+++++...+++++.++|+|||++++.+............. ......+...
T Consensus 151 ~~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~----------d~~~~rs~~~ 220 (254)
T d1xtpa_ 151 TATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKE----------DSSLTRSDIH 220 (254)
T ss_dssp GCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETT----------TTEEEBCHHH
T ss_pred ccccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceeccc----------CCceeCCHHH
Confidence 998 56899999999999999988888999999999999999999877654332111000 0111235555
Q ss_pred HHHHhhcCCCcEEEEEEe
Q 024096 174 VTSAMTSSSGLCVEHLEN 191 (272)
Q Consensus 174 ~~~~l~~~~Gf~v~~~~~ 191 (272)
+. .+.+++||++++.+.
T Consensus 221 ~~-~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 221 YK-RLFNESGVRVVKEAF 237 (254)
T ss_dssp HH-HHHHHHTCCEEEEEE
T ss_pred HH-HHHHHcCCEEEEEEe
Confidence 65 556679998876554
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.87 E-value=1.9e-21 Score=160.92 Aligned_cols=167 Identities=19% Similarity=0.210 Sum_probs=129.5
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKY 102 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~f 102 (272)
..+++.+++.+..+|||||||+|.++..++++ ++.+++++|+ |.+++.+++++...++.+++.+..+|+.+ +.+..|
T Consensus 71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p~~~ 148 (256)
T d1qzza2 71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPVTA 148 (256)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCCE
T ss_pred HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-cccccc
Confidence 45677788888899999999999999999998 8899999997 88999999999999998899999999876 333569
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCC-ccccccCcchhhhhcccCCCCCCCHHHHHHHhhcC
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQ-CYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSS 181 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 181 (272)
|+|++..++||+++++...+++++++.|||||+++|.+...+.. ...........+......++...+.+++. .++++
T Consensus 149 D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~-~ll~~ 227 (256)
T d1qzza2 149 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVV-DLAGS 227 (256)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHH-HHHHT
T ss_pred hhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHH-HHHHH
Confidence 99999999999998888899999999999999999988754332 11111000011111123345556788886 56678
Q ss_pred CCcEEEEEEecC
Q 024096 182 SGLCVEHLENIG 193 (272)
Q Consensus 182 ~Gf~v~~~~~~~ 193 (272)
+||+++++...+
T Consensus 228 AGf~~~~~~~~~ 239 (256)
T d1qzza2 228 AGLALASERTSG 239 (256)
T ss_dssp TTEEEEEEEEEC
T ss_pred CCCceeEEEEeC
Confidence 999999887754
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.86 E-value=9e-21 Score=150.93 Aligned_cols=116 Identities=18% Similarity=0.263 Sum_probs=102.9
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRI 105 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V 105 (272)
++..+....+.+|||||||+|..+..++++ +.+|+|+|+|+.+++.++++....+++ ++++...|+.+.+++++||+|
T Consensus 22 ~~~~~~~~~~grvLDiGcG~G~~~~~la~~-g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~I 99 (198)
T d2i6ga1 22 VLAAAKVVAPGRTLDLGCGNGRNSLYLAAN-GYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTFDGEYDFI 99 (198)
T ss_dssp HHHHHTTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCCCCCEEEE
T ss_pred HHHHcccCCCCcEEEECCCCCHHHHHHHHH-hhhhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccccccccEE
Confidence 344444434459999999999999999997 889999999999999999999988885 799999999998888899999
Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
++..+++|+++++...+++++.++|+|||++++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 100 LSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp EEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred EEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 99999999988888999999999999999999976653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.86 E-value=3.9e-21 Score=158.32 Aligned_cols=121 Identities=23% Similarity=0.422 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272)
Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272)
++...+..++......++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|++++...++ ++.+.++|+++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~-~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~ 101 (251)
T d1wzna1 25 AEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA 101 (251)
T ss_dssp HHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc-ceEEEEEeeccccccccccccccccc--cchheehhhhhcc
Confidence 34555677788888888899999999999999999996 78999999999999999999988775 6999999999999
Q ss_pred CCCCccEEEEe-chhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 98 KANKYDRIISC-GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 98 ~~~~fD~V~~~-~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
.+++||+|++. .+++|++.+++..++++++++|||||++++...
T Consensus 102 ~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 102 FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 66899999996 578888777888999999999999999998543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.86 E-value=5.3e-21 Score=155.30 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=102.1
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEe
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISC 108 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~ 108 (272)
.+++.+|||+|||+|..+..+++. ++++|+|+|+|+.|++.|++++...+...++++..+|+.+.+ .+.+|+|++.
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~-~~~~d~i~~~ 115 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-IKNASMVILN 115 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC-CCSEEEEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc-cccceeeEEe
Confidence 468889999999999999999974 678999999999999999999988877778899999988776 3678999999
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCC
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272)
.+++|++.+++..++++++++|||||.+++.+...+..
T Consensus 116 ~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~ 153 (225)
T d1im8a_ 116 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFED 153 (225)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSS
T ss_pred eeccccChhhHHHHHHHHHHhCCCCceeeccccccccc
Confidence 99999988889999999999999999999988876554
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.85 E-value=1e-20 Score=149.93 Aligned_cols=153 Identities=16% Similarity=0.104 Sum_probs=119.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC-----------CCCeEEEEc
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL-----------QDHIRFYLC 91 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~-----------~~~i~~~~~ 91 (272)
+...+..+.+.++.+|||+|||+|..+..|+++ |.+|+|+|+|+.+++.|+++++..+. ...+.++++
T Consensus 9 ~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T d1pjza_ 9 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 87 (201)
T ss_dssp HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence 455677888999999999999999999999997 89999999999999999998855422 134688999
Q ss_pred ccCCCC--CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCC
Q 024096 92 DYRQLP--KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLP 169 (272)
Q Consensus 92 d~~~~~--~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 169 (272)
|+.+++ ....||+|++..+++|+++++...+++++.+.|||||++++........... .| ....
T Consensus 88 d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~-------------~p-~~~~ 153 (201)
T d1pjza_ 88 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLE-------------GP-PFSV 153 (201)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSS-------------SC-CCCC
T ss_pred cccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCC-------------Cc-cccC
Confidence 998887 4478999999999999998888999999999999999998876654332211 01 1123
Q ss_pred CHHHHHHHhhcCCCcEEEEEEec
Q 024096 170 SLGRVTSAMTSSSGLCVEHLENI 192 (272)
Q Consensus 170 ~~~~~~~~l~~~~Gf~v~~~~~~ 192 (272)
+.+++. .+.. .+|++..++..
T Consensus 154 ~~~el~-~l~~-~~~~i~~~~~~ 174 (201)
T d1pjza_ 154 PQTWLH-RVMS-GNWEVTKVGGQ 174 (201)
T ss_dssp CHHHHH-HTSC-SSEEEEEEEES
T ss_pred CHHHHH-HHhC-CCcEEEEEEEe
Confidence 455554 4553 68888666554
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.84 E-value=2.8e-20 Score=150.95 Aligned_cols=151 Identities=20% Similarity=0.250 Sum_probs=110.6
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIE 112 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~ 112 (272)
..+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++. .+++.+.++|+.+.+.+++||+|++..+++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~-g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~~~~~fD~I~~~~vle 92 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQLPRRYDNIVLTHVLE 92 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCCCSSCEEEEEEESCGG
T ss_pred CCCCcEEEEeCCCcHHHHHHHHc-CCeEEEEeCcHHHhhhhhccc-----ccccccccccccccccccccccccccceeE
Confidence 34668999999999999999886 779999999999999998763 247999999999988778999999999999
Q ss_pred ccChhhHHHHHHHHH-hcCccCcEEEEEeecCCCCcc------ccccCcchhh-hhcccCCCCCCCHHHHHHHhhcCCCc
Q 024096 113 HVGHDYMEEFFGCCE-SLLATHGLLVLQFISAPDQCY------DEYRLSPGFI-KEYIFPGGCLPSLGRVTSAMTSSSGL 184 (272)
Q Consensus 113 ~~~~~~~~~~l~~~~-~~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~l~~~~Gf 184 (272)
|+ +++..+++++. ++|||||.+++..+....... ........+. .....+.....+..++. .+.+++||
T Consensus 93 h~--~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~-~~l~~~Gf 169 (225)
T d2p7ia1 93 HI--DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLE-RDASRAGL 169 (225)
T ss_dssp GC--SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHH-HHHHHTTC
T ss_pred ec--CCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHH-HHHHHCCC
Confidence 99 56689999998 799999999997654221100 0000000000 11112223345667776 45557999
Q ss_pred EEEEEEec
Q 024096 185 CVEHLENI 192 (272)
Q Consensus 185 ~v~~~~~~ 192 (272)
++++.+.+
T Consensus 170 ~i~~~~~~ 177 (225)
T d2p7ia1 170 QVTYRSGI 177 (225)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99887653
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=1.6e-20 Score=150.39 Aligned_cols=141 Identities=17% Similarity=0.187 Sum_probs=106.2
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272)
.++.+|||||||+|.++..+. +++|+|+|+.+++.++++ ++.+.++|+++++ ++++||+|++..++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~~l 101 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTI 101 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc--------cccccccccccccccccccccccccccc
Confidence 356689999999999887764 368999999999998864 6899999999998 77899999999999
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEe
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLEN 191 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~ 191 (272)
+|++ ++..+++++.++|+|||++++.++.......... ...........+..+++.+++.+ +++++||+++++..
T Consensus 102 ~h~~--d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~l~~-~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 102 CFVD--DPERALKEAYRILKKGGYLIVGIVDRESFLGREY--EKNKEKSVFYKNARFFSTEELMD-LMRKAGFEEFKVVQ 176 (208)
T ss_dssp GGSS--CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHH--HHTTTC-CCSTTCCCCCHHHHHH-HHHHTTCEEEEEEE
T ss_pred cccc--ccccchhhhhhcCCCCceEEEEecCCcchhHHhh--hhccccccccccccCCCHHHHHH-HHHHcCCeEEEEEE
Confidence 9994 5689999999999999999998765432211100 01111122233445678888875 45569998877655
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.83 E-value=2.6e-20 Score=156.14 Aligned_cols=116 Identities=25% Similarity=0.355 Sum_probs=100.8
Q ss_pred HHHHHHHHc-CCCCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC
Q 024096 22 KVSVLIEKA-RVSKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK 98 (272)
Q Consensus 22 ~~~~l~~~l-~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 98 (272)
.++.+++.+ .+..+.+|||+|||+|.++..+++. + +.+|+|+|+|+.+++.|+++....+. ++++.++|+.+++.
T Consensus 14 ~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~~ 91 (281)
T d2gh1a1 14 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL 91 (281)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC
T ss_pred HHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccccccc
Confidence 345566654 4667889999999999999999986 3 57999999999999999999987764 79999999999886
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
+++||+|++..+++|++ ++..+++++.++|||||.+++.++
T Consensus 92 ~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 92 NDKYDIAICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp SSCEEEEEEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCCceEEEEehhhhcCC--CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 67899999999999994 568999999999999999998764
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.81 E-value=3.9e-20 Score=145.80 Aligned_cols=112 Identities=20% Similarity=0.321 Sum_probs=100.3
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCc
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKY 102 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~f 102 (272)
..++..+.+.++++|||+|||+|.++..+++. ..+|+++|+++.+++.|+++++.+|+.++++++++|+.+.. ..+.|
T Consensus 23 ~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~ 101 (186)
T d1l3ia_ 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (186)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCc
Confidence 45677889999999999999999999999886 67999999999999999999999999889999999988776 55899
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
|.|++....+++ ..+++.+.+.|||||++++...
T Consensus 102 D~v~~~~~~~~~-----~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 102 DIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp EEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEEC
T ss_pred CEEEEeCccccc-----hHHHHHHHHHhCcCCEEEEEee
Confidence 999998876665 6889999999999999988644
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.81 E-value=1.2e-19 Score=149.67 Aligned_cols=110 Identities=18% Similarity=0.235 Sum_probs=96.0
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEec
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCG 109 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~ 109 (272)
.+++.+|||+|||+|..+..+++....+|+|+|+|+.+++.|+++....+...++.+.++|+...+ ..++||+|++..
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 467899999999999999999887456899999999999999999988777678999999987665 467899999999
Q ss_pred hhhccC--hhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 110 MIEHVG--HDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 110 ~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
+++|+. .++...+++++.++|||||++++..+
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 999973 35678899999999999999998644
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.81 E-value=1.4e-19 Score=148.60 Aligned_cols=119 Identities=23% Similarity=0.309 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC
Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK 98 (272)
Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 98 (272)
..+.+..++..... ++.+|||+|||+|..+..++++ +.+|+|+|+|+.|++.|++++...++ +++++++|+.+++.
T Consensus 23 ~~~~~~~~~~~~~~-~~~~vLDiGCG~G~~~~~l~~~-g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~ 98 (246)
T d1y8ca_ 23 WSDFIIEKCVENNL-VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI 98 (246)
T ss_dssp HHHHHHHHHHTTTC-CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC
T ss_pred HHHHHHHHHHHhCC-CCCeEEEEeCcCCHHHHHHHHh-CCccEeeccchhhhhhccccccccCc--cceeeccchhhhcc
Confidence 34445555555443 4579999999999999999987 77999999999999999999988775 69999999999886
Q ss_pred CCCccEEEEe-chhhccC-hhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 99 ANKYDRIISC-GMIEHVG-HDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 99 ~~~fD~V~~~-~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
+++||+|+|. .+++|+. .+++..++++++++|||||.+++...
T Consensus 99 ~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 99 NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 7899999986 6777774 45778899999999999999997543
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=7.2e-19 Score=142.94 Aligned_cols=155 Identities=17% Similarity=0.117 Sum_probs=119.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcC----------------CC
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAG----------------LQ 83 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g----------------~~ 83 (272)
....+.+.+.+.+.++.+|||+|||+|..+..|++. |.+|+|+|+|+.+++.++++....+ ..
T Consensus 31 ~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~-G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (229)
T d2bzga1 31 QLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR-GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSS 109 (229)
T ss_dssp HHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETT
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecC
Confidence 334455666677889999999999999999999996 8999999999999999988764321 12
Q ss_pred CCeEEEEcccCCCC--CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhc
Q 024096 84 DHIRFYLCDYRQLP--KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEY 161 (272)
Q Consensus 84 ~~i~~~~~d~~~~~--~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 161 (272)
.++.++++|+.+++ ..+.||+|+...+++|++.++...+++++.++|||||++++...........
T Consensus 110 ~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~------------ 177 (229)
T d2bzga1 110 GNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP------------ 177 (229)
T ss_dssp SSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCC------------
T ss_pred CcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCC------------
Confidence 47899999998876 5679999999999999998889999999999999999998876664332110
Q ss_pred ccCCCCCCCHHHHHHHhhcCCCcEEEEEEe
Q 024096 162 IFPGGCLPSLGRVTSAMTSSSGLCVEHLEN 191 (272)
Q Consensus 162 ~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~ 191 (272)
-| -...+.+++. .+.. .+|.+..++.
T Consensus 178 -gp-p~~~~~~el~-~lf~-~~~~i~~le~ 203 (229)
T d2bzga1 178 -GP-PFYVPHAEIE-RLFG-KICNIRCLEK 203 (229)
T ss_dssp -CS-SCCCCHHHHH-HHHT-TTEEEEEEEE
T ss_pred -CC-CCCCCHHHHH-HHhc-CCCEEEEEEE
Confidence 00 0224566665 4453 5788766554
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=9.4e-20 Score=149.74 Aligned_cols=128 Identities=23% Similarity=0.245 Sum_probs=101.8
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272)
..+|.+|||+|||+|.+++.+++. +++|+|+|+|+.+++.|+++++.+++ ++++.++|+.+..+.++||+|+++...
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~-g~~V~gvDis~~av~~A~~na~~n~~--~~~~~~~d~~~~~~~~~fD~V~ani~~ 194 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGV--RPRFLEGSLEAALPFGPFDLLVANLYA 194 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTC--CCEEEESCHHHHGGGCCEEEEEEECCH
T ss_pred cCccCEEEEcccchhHHHHHHHhc-CCEEEEEECChHHHHHHHHHHHHcCC--ceeEEeccccccccccccchhhhcccc
Confidence 368899999999999999988875 88999999999999999999999987 467899998765456899999997554
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEe
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLEN 191 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~ 191 (272)
+. ...+++++.++|||||+++++.+... ..+.+. ..++++||.+.+...
T Consensus 195 ~~-----l~~l~~~~~~~LkpGG~lilSgil~~-------------------------~~~~v~-~~~~~~Gf~~~~~~~ 243 (254)
T d2nxca1 195 EL-----HAALAPRYREALVPGGRALLTGILKD-------------------------RAPLVR-EAMAGAGFRPLEEAA 243 (254)
T ss_dssp HH-----HHHHHHHHHHHEEEEEEEEEEEEEGG-------------------------GHHHHH-HHHHHTTCEEEEEEE
T ss_pred cc-----HHHHHHHHHHhcCCCcEEEEEecchh-------------------------hHHHHH-HHHHHCCCEEEEEEE
Confidence 43 47889999999999999999755310 123333 344568999887665
Q ss_pred cC
Q 024096 192 IG 193 (272)
Q Consensus 192 ~~ 193 (272)
.+
T Consensus 244 ~~ 245 (254)
T d2nxca1 244 EG 245 (254)
T ss_dssp ET
T ss_pred EC
Confidence 43
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=3.4e-19 Score=145.81 Aligned_cols=114 Identities=20% Similarity=0.305 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272)
Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272)
.....+..++.... .++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.|+++ +. ..++.+|+++++
T Consensus 27 ~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~----~~---~~~~~~~~~~l~ 97 (246)
T d2avna1 27 LYHRLIGSFLEEYL-KNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREK----GV---KNVVEAKAEDLP 97 (246)
T ss_dssp HHHHHHHHHHHHHC-CSCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHH----TC---SCEEECCTTSCC
T ss_pred HHHHHHHHHHHHhc-CCCCEEEEECCCCchhccccccc-ceEEEEeecccccccccccc----cc---cccccccccccc
Confidence 33444445454433 46779999999999999999986 88999999999999999876 22 246789999998
Q ss_pred -CCCCccEEEEe-chhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 98 -KANKYDRIISC-GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 98 -~~~~fD~V~~~-~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
++++||+|++. .+++|++ ++..+++++.++|||||.++++.+.
T Consensus 98 ~~~~~fD~ii~~~~~~~~~~--d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 98 FPSGAFEAVLALGDVLSYVE--NKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp SCTTCEEEEEECSSHHHHCS--CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred cccccccceeeecchhhhhh--hHHHHHHHHHhhcCcCcEEEEEECC
Confidence 67899999985 6899995 4588999999999999999997643
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2.2e-19 Score=148.21 Aligned_cols=183 Identities=17% Similarity=0.140 Sum_probs=121.1
Q ss_pred ccccccCCCCCCHHHHHH--HHHHHHHHHcC--CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH
Q 024096 3 YSCAIFKSEHEDLEVGQM--RKVSVLIEKAR--VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVR 78 (272)
Q Consensus 3 y~~~~~~~~~~~l~~aq~--~~~~~l~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~ 78 (272)
|...+|..........+. ...+.+.+.+. ..++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++++
T Consensus 16 Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~ 95 (257)
T d2a14a1 16 YLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLK 95 (257)
T ss_dssp HHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHh
Confidence 566777766554444322 22234444433 35678999999999998887776544579999999999999999987
Q ss_pred HcCCCCC----------------------------e-EEEEcccC----CCC-CCCCccEEEEechhhccCh--hhHHHH
Q 024096 79 EAGLQDH----------------------------I-RFYLCDYR----QLP-KANKYDRIISCGMIEHVGH--DYMEEF 122 (272)
Q Consensus 79 ~~g~~~~----------------------------i-~~~~~d~~----~~~-~~~~fD~V~~~~~~~~~~~--~~~~~~ 122 (272)
....... + .....+.. ..+ +.++||+|++..+++|++. +++..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~ 175 (257)
T d2a14a1 96 KEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAA 175 (257)
T ss_dssp TCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHH
T ss_pred hccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHH
Confidence 6542110 0 11112211 122 4678999999999999963 467789
Q ss_pred HHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccH
Q 024096 123 FGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHY 196 (272)
Q Consensus 123 l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~ 196 (272)
++++.++|||||++++.++..... +... ...+ .....+.+++.+ +++++||++++++....+|
T Consensus 176 l~~i~~~LkpGG~li~~~~~~~~~-~~~~--------~~~~-~~~~~~~~~~~~-~l~~aGf~v~~~~~~~~~~ 238 (257)
T d2a14a1 176 LCNLASLLKPGGHLVTTVTLRLPS-YMVG--------KREF-SCVALEKGEVEQ-AVLDAGFDIEQLLHSPQSY 238 (257)
T ss_dssp HHHHHTTEEEEEEEEEEEESSCCE-EEET--------TEEE-ECCCCCHHHHHH-HHHHTTEEEEEEEEECCCC
T ss_pred HHHHHhccCCCcEEEEEEeccccc-ceec--------cccc-cccCCCHHHHHH-HHHHCCCEEEEEEEecccc
Confidence 999999999999999987753322 1100 0011 123456777765 4556999999987765544
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.77 E-value=9.7e-19 Score=141.79 Aligned_cols=145 Identities=10% Similarity=0.057 Sum_probs=110.7
Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCcc
Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYD 103 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD 103 (272)
++.++++||++|||+|||+|..+..+++. ++.+|+|+|+|+.+++.+++++... +++..+.+|....+ .+..+|
T Consensus 67 l~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~ 143 (230)
T d1g8sa_ 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEK 143 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTCCC
T ss_pred HHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCcccccccce
Confidence 35667899999999999999999999998 6789999999999999999887654 47888898887765 556788
Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCC
Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSG 183 (272)
Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~G 183 (272)
++++...++|. ++...+++++.+.|||||.+++.+........... . ...++..+ .++++|
T Consensus 144 v~~i~~~~~~~--~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~----~------------~~~~e~~~-~L~~aG 204 (230)
T d1g8sa_ 144 VDVIYEDVAQP--NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP----K------------EIFKEQKE-ILEAGG 204 (230)
T ss_dssp EEEEEECCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH----H------------HHHHHHHH-HHHHHT
T ss_pred eEEeeccccch--HHHHHHHHHHHHhcccCceEEEEeeccccCCCCCH----H------------HHHHHHHH-HHHHcC
Confidence 88888777877 56688999999999999999987654322210000 0 01233443 344689
Q ss_pred cEEEEEEecC
Q 024096 184 LCVEHLENIG 193 (272)
Q Consensus 184 f~v~~~~~~~ 193 (272)
|++.+..++.
T Consensus 205 F~ive~idL~ 214 (230)
T d1g8sa_ 205 FKIVDEVDIE 214 (230)
T ss_dssp EEEEEEEECT
T ss_pred CEEEEEecCC
Confidence 9999887764
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.77 E-value=3.5e-18 Score=135.31 Aligned_cols=128 Identities=23% Similarity=0.421 Sum_probs=105.4
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 024096 5 CAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD 84 (272)
Q Consensus 5 ~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~ 84 (272)
.++|..+..+. + .+.+++.+...++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.++++++.+++..
T Consensus 29 ~gvF~~~~~d~--~----t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i~~a~~n~~~~~l~~ 101 (194)
T d1dusa_ 29 SGVFSYGKVDK--G----TKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDN 101 (194)
T ss_dssp TTSTTTTSCCH--H----HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred CCccCCCCcCH--H----HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhh-ccccceeeeccccchhHHHHHHHhCCcc
Confidence 46665554332 2 234778888899999999999999999999886 6799999999999999999999988753
Q ss_pred -CeEEEEcccCCCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 85 -HIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 85 -~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
++++..+|+.+..++++||+|+++.++++. .+....+++++.+.|||||.+++..
T Consensus 102 ~~i~~~~~d~~~~~~~~~fD~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 102 YDIRVVHSDLYENVKDRKYNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp SCEEEEECSTTTTCTTSCEEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEEcchhhhhccCCceEEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEEE
Confidence 689999998875567899999999887665 3345789999999999999998743
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.75 E-value=4.4e-18 Score=139.07 Aligned_cols=109 Identities=18% Similarity=0.207 Sum_probs=92.0
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272)
..++.+++++||++|||+|||+|.++..+++. ++.+|+++|.++.+++.|+++++..+...++++.++|+.+..+++.
T Consensus 75 ~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~ 154 (250)
T d1yb2a1 75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 154 (250)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccce
Confidence 56788999999999999999999999999987 5679999999999999999999987666799999999988777789
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
||.|++. ++ ++..+++++.++|||||++++.
T Consensus 155 fD~V~ld-----~p--~p~~~l~~~~~~LKpGG~lv~~ 185 (250)
T d1yb2a1 155 YDAVIAD-----IP--DPWNHVQKIASMMKPGSVATFY 185 (250)
T ss_dssp EEEEEEC-----CS--CGGGSHHHHHHTEEEEEEEEEE
T ss_pred eeeeeec-----CC--chHHHHHHHHHhcCCCceEEEE
Confidence 9999863 43 3367899999999999999874
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=4.9e-18 Score=136.23 Aligned_cols=110 Identities=20% Similarity=0.232 Sum_probs=96.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
..+..+++.+++++|++|||||||+|..+..+++. +..+|+++|+++.+++.|+++++..++ +++.++++|..+..
T Consensus 62 ~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~~~~~~ 140 (213)
T d1dl5a1 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYGVP 140 (213)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCG
T ss_pred hhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCchHHccc
Confidence 45677899999999999999999999999999987 457999999999999999999999887 48899999988766
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+++||+|++..+++++++ ++.+.|||||++++.
T Consensus 141 ~~~~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 141 EFSPYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp GGCCEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEE
T ss_pred cccchhhhhhhccHHHhHH--------HHHHhcCCCcEEEEE
Confidence 5678999999999999863 256679999999874
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.73 E-value=2.6e-17 Score=131.41 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=89.1
Q ss_pred HHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEE
Q 024096 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRI 105 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V 105 (272)
..++++||++|||+|||+|..+..+++. +..+|+|+|+|+.+++.++++++.. +++.++.+|....+ ....+|.+
T Consensus 50 ~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~v 126 (209)
T d1nt2a_ 50 HRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKV 126 (209)
T ss_dssp CCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCE
T ss_pred ccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc---CCceEEEeeccCccccccccceE
Confidence 3578899999999999999999999988 6679999999999999999998876 38999999988866 33333333
Q ss_pred E-EechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 106 I-SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 106 ~-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
. +...+.|. .+...+++++.++|||||++++.+..
T Consensus 127 d~v~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 127 DLIYQDIAQK--NQIEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp EEEEECCCST--THHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred EEEEecccCh--hhHHHHHHHHHHHhccCCeEEEEEEc
Confidence 2 22334555 45688999999999999999987644
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.73 E-value=1.2e-17 Score=137.24 Aligned_cols=111 Identities=17% Similarity=0.280 Sum_probs=97.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHc--CCCCCeEEEEcccCCCC-
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREA--GLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~--g~~~~i~~~~~d~~~~~- 97 (272)
+..++..+++.||++|||+|||+|.++..|++. +..+|+++|+++++++.|+++++.. +..+++.+.++|+.+.+
T Consensus 85 ~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~ 164 (264)
T d1i9ga_ 85 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 164 (264)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc
Confidence 367889999999999999999999999999998 6789999999999999999998764 44579999999998877
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+++.||.|+. +++ ++..+++++.++|||||++++..
T Consensus 165 ~~~~fDaV~l-----dlp--~P~~~l~~~~~~LkpGG~lv~~~ 200 (264)
T d1i9ga_ 165 PDGSVDRAVL-----DML--APWEVLDAVSRLLVAGGVLMVYV 200 (264)
T ss_dssp CTTCEEEEEE-----ESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred cCCCcceEEE-----ecC--CHHHHHHHHHhccCCCCEEEEEe
Confidence 6789999986 464 34789999999999999998743
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=2.1e-17 Score=136.54 Aligned_cols=111 Identities=19% Similarity=0.232 Sum_probs=97.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
...++..+++.||++|||+|||+|.++..+++. ++++|+++|+++++++.|+++++..++.+++.+...|+.......
T Consensus 92 ~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~ 171 (266)
T d1o54a_ 92 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 171 (266)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccccc
Confidence 357899999999999999999999999999987 568999999999999999999999998889999999976655567
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
.||.|+. +++ ++..+++++.++|||||++++..
T Consensus 172 ~~D~V~~-----d~p--~p~~~l~~~~~~LKpGG~lv~~~ 204 (266)
T d1o54a_ 172 DVDALFL-----DVP--DPWNYIDKCWEALKGGGRFATVC 204 (266)
T ss_dssp SEEEEEE-----CCS--CGGGTHHHHHHHEEEEEEEEEEE
T ss_pred ceeeeEe-----cCC--CHHHHHHHHHhhcCCCCEEEEEe
Confidence 8998875 564 44789999999999999999743
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.4e-17 Score=139.12 Aligned_cols=163 Identities=17% Similarity=0.163 Sum_probs=106.3
Q ss_pred HHHHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc-----c--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE--EEE
Q 024096 21 RKVSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ-----T--GCKYTGITLSEEQLKYAEIKVREAGLQDHIR--FYL 90 (272)
Q Consensus 21 ~~~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~-----~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~--~~~ 90 (272)
+.+..++.++. .++..+|||||||+|.++..++.. + ..+++|+|+|+.+++.++++........++. +..
T Consensus 26 ~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 105 (280)
T d1jqea_ 26 KKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHK 105 (280)
T ss_dssp HTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEEC
T ss_pred HHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchh
Confidence 33344444443 345568999999999998877653 1 2478999999999999999886543323444 444
Q ss_pred cccCCC------C-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhccc
Q 024096 91 CDYRQL------P-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIF 163 (272)
Q Consensus 91 ~d~~~~------~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (272)
.++++. + ++++||+|++..+++|+ +++..+++++.++|+|||.+++............ ...+...+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~--~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l---~~~~~~~~~~ 180 (280)
T d1jqea_ 106 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKL---WKKYGSRFPQ 180 (280)
T ss_dssp SCHHHHHHHHTTSSSCCCEEEEEEESCGGGC--SCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHH---HHHHGGGSCC
T ss_pred hhhhhhcchhcccCCCCceeEEEEccceecC--CCHHHHHHHHHhhCCCCCEEEEEEecCcchHHHH---HHHHHHhcCC
Confidence 444321 2 56899999999999999 4568999999999999999998765432211110 0111111111
Q ss_pred C-CCCCCCHHHHHHHhhcCCCcEEEEE
Q 024096 164 P-GGCLPSLGRVTSAMTSSSGLCVEHL 189 (272)
Q Consensus 164 p-~~~~~~~~~~~~~l~~~~Gf~v~~~ 189 (272)
+ .....+..++.+ ++++.||.....
T Consensus 181 ~~~~~~~~~~~~~~-~L~~~G~~~~~~ 206 (280)
T d1jqea_ 181 DDLCQYITSDDLTQ-MLDNLGLKYECY 206 (280)
T ss_dssp CTTSCCCCHHHHHH-HHHHHTCCEEEE
T ss_pred CcccccCCHHHHHH-HHHHCCCceEEE
Confidence 1 123456666664 455689976543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=3.1e-17 Score=136.20 Aligned_cols=102 Identities=22% Similarity=0.295 Sum_probs=86.7
Q ss_pred HHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCc
Q 024096 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKY 102 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~f 102 (272)
.+.+.+. .++.+|||+|||+|.++..+++. ++.+++|+|+|+.+++.|+++. .++.+.++|+.+++ ++++|
T Consensus 76 ~l~~~~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~~sf 148 (268)
T d1p91a_ 76 QLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSM 148 (268)
T ss_dssp HHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCE
T ss_pred HHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCCCCE
Confidence 3344444 56679999999999999999998 7889999999999999998752 47899999999999 78999
Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
|+|++..+.+|+ +++.|+|||||+++++.+.
T Consensus 149 D~v~~~~~~~~~---------~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 149 DAIIRIYAPCKA---------EELARVVKPGGWVITATPG 179 (268)
T ss_dssp EEEEEESCCCCH---------HHHHHHEEEEEEEEEEEEC
T ss_pred EEEeecCCHHHH---------HHHHHHhCCCcEEEEEeeC
Confidence 999998877764 4688999999999997765
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=2.9e-17 Score=138.11 Aligned_cols=117 Identities=24% Similarity=0.347 Sum_probs=93.0
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC---CCeEEEEcccCCC----
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ---DHIRFYLCDYRQL---- 96 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~---~~i~~~~~d~~~~---- 96 (272)
+++.+.+...++.+|||+|||+|..+..|++. +.+|+|+|+|+.|++.|+++....+.. ....+..+++..+
T Consensus 46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T d1xvaa_ 46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV 124 (292)
T ss_dssp HHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred HHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccccc
Confidence 44555565567789999999999999999997 889999999999999999998776542 1245566665433
Q ss_pred CCCCCccEEEEe-chhhccCh-----hhHHHHHHHHHhcCccCcEEEEEee
Q 024096 97 PKANKYDRIISC-GMIEHVGH-----DYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 97 ~~~~~fD~V~~~-~~~~~~~~-----~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
+..++||+|++. .+++|+++ ++...++++++++|||||++++...
T Consensus 125 ~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 125 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp CCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 345789999986 48899864 4577899999999999999998654
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=6.7e-17 Score=133.82 Aligned_cols=150 Identities=18% Similarity=0.051 Sum_probs=104.5
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC---------------------------
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD--------------------------- 84 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~--------------------------- 84 (272)
...|.+|||+|||+|..+...+.....+|+|+|+|+.+++.+++++++....-
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 34688999999999988766565545699999999999999998775432100
Q ss_pred --CeEEEEcccCCCC-------CCCCccEEEEechhhccCh--hhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccC
Q 024096 85 --HIRFYLCDYRQLP-------KANKYDRIISCGMIEHVGH--DYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRL 153 (272)
Q Consensus 85 --~i~~~~~d~~~~~-------~~~~fD~V~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 153 (272)
...+..+|+.+.. ..++||+|++..+++|++. +++..+++++.++|||||++++.++.......
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~----- 206 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYL----- 206 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEE-----
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccc-----
Confidence 1234556654422 2457999999999999963 36789999999999999999998765332110
Q ss_pred cchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEec
Q 024096 154 SPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENI 192 (272)
Q Consensus 154 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~ 192 (272)
.....++ ....+.+++.+ +.+++||++++++..
T Consensus 207 ----~~~~~~~-~~~~t~e~v~~-~l~~aGf~v~~~~~~ 239 (263)
T d2g72a1 207 ----AGEARLT-VVPVSEEEVRE-ALVRSGYKVRDLRTY 239 (263)
T ss_dssp ----ETTEEEE-CCCCCHHHHHH-HHHHTTEEEEEEEEE
T ss_pred ----cCCcccc-cCCCCHHHHHH-HHHHCCCeEEEEEEe
Confidence 0111111 12357777765 455699999877654
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=9.1e-17 Score=129.60 Aligned_cols=110 Identities=22% Similarity=0.244 Sum_probs=93.7
Q ss_pred HHHHHHHHc--CCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEEEccc
Q 024096 22 KVSVLIEKA--RVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGL----QDHIRFYLCDY 93 (272)
Q Consensus 22 ~~~~l~~~l--~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~----~~~i~~~~~d~ 93 (272)
....+++.| .+++|++|||||||+|..+..+++. +..+|+++|+++++++.|++++++.++ ..++.+.++|.
T Consensus 62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~ 141 (224)
T d1i1na_ 62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 141 (224)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence 346778877 6789999999999999999999987 467999999999999999999987654 24789999998
Q ss_pred CCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 94 RQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 94 ~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.... ...+||+|++..+++++++ .+.+.|||||++++.
T Consensus 142 ~~~~~~~~~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 142 RMGYAEEAPYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILP 180 (224)
T ss_dssp GGCCGGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred ccccchhhhhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEE
Confidence 8766 5678999999999998853 256789999999984
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=3.4e-17 Score=139.72 Aligned_cols=129 Identities=15% Similarity=0.144 Sum_probs=104.2
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc-------CC
Q 024096 11 EHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA-------GL 82 (272)
Q Consensus 11 ~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~-------g~ 82 (272)
.+....+++...++.+++.+.++++++|||+|||+|..+..+++. +..+++|+|+++.+++.|+++.+.. |.
T Consensus 128 ~~~~~~e~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~ 207 (328)
T d1nw3a_ 128 SPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK 207 (328)
T ss_dssp STTCCCCCCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCchhhhHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccc
Confidence 455667788888999999999999999999999999999999987 4458999999999999998876542 22
Q ss_pred -CCCeEEEEcccCCCC-CCCC--ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 83 -QDHIRFYLCDYRQLP-KANK--YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 83 -~~~i~~~~~d~~~~~-~~~~--fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
..++.++++|+.+.+ .+.. +|+|+++ .+.|. .++...++++.+.|||||+++.....
T Consensus 208 ~~~~i~~~~gd~~~~~~~~~~~~advi~~~-~~~f~--~~~~~~l~e~~r~LKpGg~iv~~~~~ 268 (328)
T d1nw3a_ 208 KHAEYTLERGDFLSEEWRERIANTSVIFVN-NFAFG--PEVDHQLKERFANMKEGGRIVSSKPF 268 (328)
T ss_dssp CCCCEEEEECCTTSHHHHHHHHHCSEEEEC-CTTTC--HHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred cCCceEEEECcccccccccccCcceEEEEc-ceecc--hHHHHHHHHHHHhCCCCcEEEEeccc
Confidence 357999999999877 3333 4677765 45555 56788999999999999999875443
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.3e-17 Score=133.93 Aligned_cols=111 Identities=16% Similarity=0.120 Sum_probs=90.0
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KAN 100 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~ 100 (272)
..+.+.+. .+|.+|||||||+|..+..+++..+.+++|+|+|+.+++.|+++....+ .++.++..++.... +++
T Consensus 44 ~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 120 (229)
T d1zx0a1 44 HALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDG 120 (229)
T ss_dssp HHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTT
T ss_pred HHHHHhhc-cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccccc
Confidence 44444444 5788999999999999999998755789999999999999999987654 46788888866543 567
Q ss_pred CccEEE-----EechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 101 KYDRII-----SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 101 ~fD~V~-----~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+||.|+ +...++|+ .+...++++++++|||||++++.
T Consensus 121 ~fD~i~fD~~~~~~~~~~~--~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 121 HFDGILYDTYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CEEEEEECCCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccceeecccccccccccc--cCHHHHHHHHHHHcCCCcEEEEE
Confidence 899887 45667777 56789999999999999999873
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.68 E-value=1.3e-16 Score=126.67 Aligned_cols=105 Identities=18% Similarity=0.254 Sum_probs=91.9
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEec
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCG 109 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~ 109 (272)
++..|||||||+|..+..+|+. ++..++|+|+++.++..+.+++...++. |+.++++|+..+. +++++|.|++..
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-CchhcccchhhhhcccCchhhhcccccc
Confidence 4568999999999999999998 8999999999999999999999999984 8999999998765 678999999998
Q ss_pred hhhccChhh------HHHHHHHHHhcCccCcEEEEE
Q 024096 110 MIEHVGHDY------MEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 110 ~~~~~~~~~------~~~~l~~~~~~LkpgG~l~i~ 139 (272)
...|...+. ...+++.++++|||||.|++.
T Consensus 108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~ 143 (204)
T d2fcaa1 108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 877653221 157999999999999999885
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.66 E-value=3.4e-16 Score=125.78 Aligned_cols=106 Identities=22% Similarity=0.294 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KAN 100 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~ 100 (272)
....+++.++++++++|||||||+|.++..|++. ..+|+++|+++.+++.|+++.... .++.++++|..... ...
T Consensus 58 ~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~~~ 133 (224)
T d1vbfa_ 58 LGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEEEK 133 (224)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGGGC
T ss_pred hHHHHHHHhhhcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcc---cccccccCchhhcchhhh
Confidence 4456889999999999999999999999999986 779999999999999999887643 58999999977644 557
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+||+|++..+++++++. +.+.|||||++++-
T Consensus 134 pfD~Iiv~~a~~~ip~~--------l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 134 PYDRVVVWATAPTLLCK--------PYEQLKEGGIMILP 164 (224)
T ss_dssp CEEEEEESSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred hHHHHHhhcchhhhhHH--------HHHhcCCCCEEEEE
Confidence 89999999999888532 45679999999873
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.65 E-value=1.3e-15 Score=124.17 Aligned_cols=159 Identities=15% Similarity=0.131 Sum_probs=117.6
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 024096 22 KVSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA 99 (272)
Q Consensus 22 ~~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~ 99 (272)
..+.+++.++ .....+|||||||+|.++..++++ |+.+++.+|+ |..++ ..+..++++++.+|+.+..+
T Consensus 68 ~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~ri~~~~gd~~~~~p- 138 (244)
T d1fp1d2 68 EMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAPPLSGIEHVGGDMFASVP- 138 (244)
T ss_dssp HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCCTTEEEEECCTTTCCC-
T ss_pred HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccCCCCCeEEecCCcccccc-
Confidence 3456777787 466789999999999999999998 8999999997 44432 33445799999999865333
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccC-cchh--hhhcccCCCCCCCHHHHHH
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRL-SPGF--IKEYIFPGGCLPSLGRVTS 176 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-~~~~--~~~~~~p~~~~~~~~~~~~ 176 (272)
..|+++...++|++++++...+++++++.|+|||++++.+...++........ .... +......++.-.+.+++.
T Consensus 139 -~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~- 216 (244)
T d1fp1d2 139 -QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYE- 216 (244)
T ss_dssp -CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHH-
T ss_pred -cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHH-
Confidence 45999999999999999999999999999999999999998866543211110 0001 111112345556788887
Q ss_pred HhhcCCCcEEEEEEe
Q 024096 177 AMTSSSGLCVEHLEN 191 (272)
Q Consensus 177 ~l~~~~Gf~v~~~~~ 191 (272)
.+++++||+.+++..
T Consensus 217 ~ll~~AGF~~v~v~~ 231 (244)
T d1fp1d2 217 KLSKLSGFSKFQVAC 231 (244)
T ss_dssp HHHHHTTCSEEEEEE
T ss_pred HHHHHcCCCceEEEe
Confidence 456679998877643
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.64 E-value=6.7e-16 Score=123.23 Aligned_cols=109 Identities=22% Similarity=0.278 Sum_probs=96.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KAN 100 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~ 100 (272)
.+..+++.++++++.+|||||||+|..+..+++..+.+|+++|.++.+++.+++++...++ +++.++++|..+.. ...
T Consensus 66 ~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~~~~ 144 (215)
T d1jg1a_ 66 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPPKA 144 (215)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGC
T ss_pred hHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCcccC
Confidence 4567899999999999999999999999999987677899999999999999999999988 48999999987755 668
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+||.|++..++.++|.. +.+.|+|||++++.
T Consensus 145 pfD~Iiv~~a~~~ip~~--------l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 145 PYDVIIVTAGAPKIPEP--------LIEQLKIGGKLIIP 175 (215)
T ss_dssp CEEEEEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred cceeEEeecccccCCHH--------HHHhcCCCCEEEEE
Confidence 99999999999988642 45678999999873
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.64 E-value=1.7e-15 Score=120.17 Aligned_cols=105 Identities=22% Similarity=0.340 Sum_probs=90.4
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEec
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCG 109 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~ 109 (272)
....|||||||+|..+..+|+. ++..++|+|+++.++..|.+++...+++ |+.++.+|+..+. ++.++|.|++..
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhhhccCCceehhcccc
Confidence 4568999999999999999998 8999999999999999999999999985 8999999998875 668999999887
Q ss_pred hhhccChhh------HHHHHHHHHhcCccCcEEEEE
Q 024096 110 MIEHVGHDY------MEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 110 ~~~~~~~~~------~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.-.+...+. ...+++.+.++|||||.+++.
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~ 145 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 655442111 168999999999999999885
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=8.8e-16 Score=129.86 Aligned_cols=109 Identities=14% Similarity=0.235 Sum_probs=91.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHc----------CCCCCeEEEE
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREA----------GLQDHIRFYL 90 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~----------g~~~~i~~~~ 90 (272)
+..++..+++.||++|||+|||+|.++..|++. ++.+|+++|+++++++.|+++++.. +..+++.+.+
T Consensus 87 ~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 357889999999999999999999999999997 5679999999999999999998753 3457899999
Q ss_pred cccCCCC---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 91 CDYRQLP---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 91 ~d~~~~~---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+|+.+.. .+..||.|+. .++ ++..++.++.++|||||++++
T Consensus 167 ~di~~~~~~~~~~~fD~V~L-----D~p--~P~~~l~~~~~~LKpGG~lv~ 210 (324)
T d2b25a1 167 KDISGATEDIKSLTFDAVAL-----DML--NPHVTLPVFYPHLKHGGVCAV 210 (324)
T ss_dssp SCTTCCC-------EEEEEE-----CSS--STTTTHHHHGGGEEEEEEEEE
T ss_pred cchhhcccccCCCCcceEee-----cCc--CHHHHHHHHHHhccCCCEEEE
Confidence 9998765 4568999986 343 235689999999999999987
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=1.1e-15 Score=130.35 Aligned_cols=111 Identities=25% Similarity=0.325 Sum_probs=94.0
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccE
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDR 104 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~ 104 (272)
+.+.....++.+|||||||+|.++..+++....+|+++|.|+ ++..++++.+.+++.+++.++++|+.+++ ++++||+
T Consensus 30 I~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~ 108 (328)
T d1g6q1_ 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDI 108 (328)
T ss_dssp HHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEE
T ss_pred HHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeE
Confidence 334444567899999999999999998887446999999986 67889999999999889999999999998 6789999
Q ss_pred EEEechhhccCh-hhHHHHHHHHHhcCccCcEEE
Q 024096 105 IISCGMIEHVGH-DYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 105 V~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~ 137 (272)
|++..+.+++.. .....++..+.++|||||.++
T Consensus 109 i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 999887776654 346788888999999999986
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=2.3e-15 Score=123.75 Aligned_cols=109 Identities=19% Similarity=0.252 Sum_probs=92.7
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRI 105 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V 105 (272)
+.+. ..+|.+|||+|||+|.++..+++...++|+++|+++.+++.++++++.+++.++++++++|+.+++..+.||.|
T Consensus 101 i~~~--~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~I 178 (260)
T d2frna1 101 MAKV--AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRI 178 (260)
T ss_dssp HHHH--CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEE
T ss_pred HHhh--cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEE
Confidence 4444 45899999999999999999998755799999999999999999999999998999999999998877899999
Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
++...-. ...+++.+.+.|+|||.+.+....
T Consensus 179 i~~~p~~------~~~~l~~a~~~l~~gG~lh~~~~~ 209 (260)
T d2frna1 179 LMGYVVR------THEFIPKALSIAKDGAIIHYHNTV 209 (260)
T ss_dssp EECCCSS------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred EECCCCc------hHHHHHHHHhhcCCCCEEEEEecc
Confidence 9864321 145777788899999999876554
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=5.3e-15 Score=119.07 Aligned_cols=109 Identities=22% Similarity=0.183 Sum_probs=89.0
Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCC
Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KAN 100 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~ 100 (272)
++.+.++||++|||+|||+|.++..+++. +..+|+++|+++.+++.++++++.. .++..+..|..... ..+
T Consensus 66 l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~~~~~i~~d~~~~~~~~~~~~ 142 (227)
T d1g8aa_ 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCC
T ss_pred ccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---CCceEEEEECCCccccccccc
Confidence 35567899999999999999999999998 5679999999999999999987655 36788888876543 346
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
.+|+|++. +.|. ++...+++++.+.|||||+++++...
T Consensus 143 ~vD~i~~d--~~~~--~~~~~~l~~~~~~LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 143 KVDVIFED--VAQP--TQAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp CEEEEEEC--CCST--THHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ceEEEEEE--cccc--chHHHHHHHHHHhcccCCeEEEEEEC
Confidence 78888764 3444 45678999999999999999986544
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=1.1e-15 Score=129.68 Aligned_cols=107 Identities=25% Similarity=0.258 Sum_probs=91.3
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEec
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCG 109 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~ 109 (272)
.+.++++|||||||+|.++..+++....+|+++|.|+. ...++++++.+++.+++.++++|+.+++ +.++||+|++..
T Consensus 30 ~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~ 108 (316)
T d1oria_ 30 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW 108 (316)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred ccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeee
Confidence 34578999999999999999999873368999999975 5777888888999889999999999998 668999999987
Q ss_pred hhhccChh-hHHHHHHHHHhcCccCcEEEE
Q 024096 110 MIEHVGHD-YMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 110 ~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i 138 (272)
+.+++..+ .++.++..+.++|||||.++-
T Consensus 109 ~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 109 MGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 76666443 568899999999999999873
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=2.8e-15 Score=123.72 Aligned_cols=115 Identities=15% Similarity=0.287 Sum_probs=93.6
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272)
++.++.... ..+.+|||+|||+|..+..++.. +.++|+++|+|+..++.|++|+..+++ .+++++++|+.+..++++
T Consensus 98 v~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~~~~~~~~ 175 (274)
T d2b3ta1 98 VEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSALAGQQ 175 (274)
T ss_dssp HHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTGGGTTCC
T ss_pred hhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-ccceeeecccccccCCCc
Confidence 345555544 45678999999999999999987 889999999999999999999999998 479999999877546679
Q ss_pred ccEEEEechhhc-------------cC----------hhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEH-------------VG----------HDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~-------------~~----------~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
||+|+|+...-. -| .+....+++++.+.|+|||.+++.
T Consensus 176 fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE 236 (274)
T d2b3ta1 176 FAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 236 (274)
T ss_dssp EEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred eeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence 999999864321 11 133467889999999999999983
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=6.6e-15 Score=124.53 Aligned_cols=112 Identities=25% Similarity=0.269 Sum_probs=92.2
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccE
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDR 104 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~ 104 (272)
+.+.....++.+|||||||+|.++..+++....+|+++|.|+.+. .+++....++..+++.++++|+.+++ +.++||+
T Consensus 27 i~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~ 105 (311)
T d2fyta1 27 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDV 105 (311)
T ss_dssp HHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEE
T ss_pred HHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcCccccceE
Confidence 334445668899999999999999999987335999999999875 46667777888889999999999998 6689999
Q ss_pred EEEechhhccChh-hHHHHHHHHHhcCccCcEEEE
Q 024096 105 IISCGMIEHVGHD-YMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 105 V~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i 138 (272)
|++..+.++...+ .+..++....++|||||+++-
T Consensus 106 Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 106 IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp EEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 9998777776544 456777778899999999874
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.4e-14 Score=125.44 Aligned_cols=121 Identities=11% Similarity=0.135 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcC-------C-CCCeEE-
Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAG-------L-QDHIRF- 88 (272)
Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~g-------~-~~~i~~- 88 (272)
.-..+..++++++++++++|||||||+|..+..+|...+ .+++|+|+++.+++.|+++.+..+ . ...+.+
T Consensus 201 ~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~ 280 (406)
T d1u2za_ 201 LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS 280 (406)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred CHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceee
Confidence 344578899999999999999999999999999998844 589999999999999999886532 1 122333
Q ss_pred EEcccCCCC----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 89 YLCDYRQLP----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 89 ~~~d~~~~~----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
..+++...+ .-..+|+|+++. +.|. .++...++++.+.|||||+++..+..
T Consensus 281 ~~~~f~~~~~~d~~~~~adVV~inn-~~f~--~~l~~~L~ei~r~LKPGGrIVs~~~~ 335 (406)
T d1u2za_ 281 LKKSFVDNNRVAELIPQCDVILVNN-FLFD--EDLNKKVEKILQTAKVGCKIISLKSL 335 (406)
T ss_dssp ESSCSTTCHHHHHHGGGCSEEEECC-TTCC--HHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred eeechhhccccccccccceEEEEec-ccCc--hHHHHHHHHHHHhcCCCcEEEEeccc
Confidence 345554443 124678888754 4454 67789999999999999999875543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.55 E-value=2.4e-14 Score=116.67 Aligned_cols=150 Identities=9% Similarity=0.064 Sum_probs=111.3
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272)
....+|||||||+|..+..++++ ++.++++.|+ |..++ ..+..++++++.+|+.+.. ..+|+++...++
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~rv~~~~gD~f~~~--p~aD~~~l~~vL 148 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVE-------NLSGSNNLTYVGGDMFTSI--PNADAVLLKYIL 148 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCBTTEEEEECCTTTCC--CCCSEEEEESCG
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHH-------hCcccCceEEEecCcccCC--CCCcEEEEEeec
Confidence 34578999999999999999998 8999999998 54443 3345579999999987643 368999999999
Q ss_pred hccChhhHHHHHHHHHhcCccC---cEEEEEeecCCCCccccccCcch-hhhh-cccCCCCCCCHHHHHHHhhcCCCcEE
Q 024096 112 EHVGHDYMEEFFGCCESLLATH---GLLVLQFISAPDQCYDEYRLSPG-FIKE-YIFPGGCLPSLGRVTSAMTSSSGLCV 186 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~Lkpg---G~l~i~~~~~~~~~~~~~~~~~~-~~~~-~~~p~~~~~~~~~~~~~l~~~~Gf~v 186 (272)
|++++++...+|+++++.|+|| |++++.+...++........... .+.- ....++.-.+.+++.+ +++++||++
T Consensus 149 Hdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~-ll~~AGf~~ 227 (244)
T d1fp2a2 149 HNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKK-LFIEAGFQH 227 (244)
T ss_dssp GGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHH-HHHHTTCCE
T ss_pred ccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHH-HHHHcCCce
Confidence 9999999999999999999999 78888887765543221111111 1100 1123456667888874 566799999
Q ss_pred EEEEecC
Q 024096 187 EHLENIG 193 (272)
Q Consensus 187 ~~~~~~~ 193 (272)
.++...+
T Consensus 228 ~~i~~~~ 234 (244)
T d1fp2a2 228 YKISPLT 234 (244)
T ss_dssp EEEEEEE
T ss_pred EEEEECC
Confidence 8877654
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.52 E-value=1.2e-14 Score=116.75 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=89.4
Q ss_pred HHHHHHHHc--CCCCCCEEEEECCCchHHHHHHHHcc-------CCEEEEEcCCHHHHHHHHHHHHHc-----CCCCCeE
Q 024096 22 KVSVLIEKA--RVSKGQEVLDIGCGWGTLAIEIVKQT-------GCKYTGITLSEEQLKYAEIKVREA-----GLQDHIR 87 (272)
Q Consensus 22 ~~~~l~~~l--~~~~~~~vLDiG~G~G~~~~~l~~~~-------~~~v~gvd~s~~~~~~a~~~~~~~-----g~~~~i~ 87 (272)
....+++.| .++++++|||||||+|..+..+++.. +.+|+++|.++++++.+++++... +. .++.
T Consensus 66 ~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~-~nv~ 144 (223)
T d1r18a_ 66 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS-GQLL 144 (223)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH-TSEE
T ss_pred hHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCc-cEEE
Confidence 346778877 68899999999999999998888751 248999999999999999886543 22 4799
Q ss_pred EEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 88 FYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 88 ~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+.++|..+.. +..+||+|++..++.++++ .+.+.|||||++++.
T Consensus 145 ~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 145 IVEGDGRKGYPPNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVP 189 (223)
T ss_dssp EEESCGGGCCGGGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred EEecccccccccccceeeEEEEeechhchH--------HHHHhcCCCcEEEEE
Confidence 9999987765 5678999999999988853 256789999999873
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.50 E-value=7.2e-14 Score=113.84 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=114.7
Q ss_pred HHHHHHHcCCCC-CCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 23 VSVLIEKARVSK-GQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 23 ~~~l~~~l~~~~-~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
...+++.++..+ ..+|||||||+|..+..++++ |+.+++++|+.+ .++ .....+++++..+|+.+..+
T Consensus 69 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~-------~~~~~~r~~~~~~d~~~~~P-- 138 (243)
T d1kyza2 69 MKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIE-------DAPSYPGVEHVGGDMFVSIP-- 138 (243)
T ss_dssp HHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTT-------TCCCCTTEEEEECCTTTCCC--
T ss_pred HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhh-------hcccCCceEEecccccccCC--
Confidence 356667776544 579999999999999999999 899999999854 332 23344689999999865323
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCc----chhhhhcccCCCCCCCHHHHHH
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLS----PGFIKEYIFPGGCLPSLGRVTS 176 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~~~~~~ 176 (272)
..|+++...++|++++++...+++++++.|+|||++++.+...++......... ......-..+++.-.+.+++.
T Consensus 139 ~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~- 217 (243)
T d1kyza2 139 KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFE- 217 (243)
T ss_dssp CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHH-
T ss_pred CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHH-
Confidence 367888899999999999999999999999999999998877654322111100 011111123455556778886
Q ss_pred HhhcCCCcEEEEEEec
Q 024096 177 AMTSSSGLCVEHLENI 192 (272)
Q Consensus 177 ~l~~~~Gf~v~~~~~~ 192 (272)
.+++++||+.+++...
T Consensus 218 ~ll~~AGf~~vkv~~~ 233 (243)
T d1kyza2 218 DLAKGAGFQGFKVHCN 233 (243)
T ss_dssp HHHHHHCCSCEEEEEE
T ss_pred HHHHHcCCCcEEEEEe
Confidence 5666799988877643
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.50 E-value=4e-14 Score=120.18 Aligned_cols=111 Identities=21% Similarity=0.161 Sum_probs=91.3
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEE
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRII 106 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~ 106 (272)
+.+|.+|||+|||+|.++..++.....+|+++|+|+..++.++++++.+|+.++++++++|+.+.. ...+||+|+
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 367899999999999999999987445899999999999999999999999889999999976532 457899999
Q ss_pred EechhhccCh-------hhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 107 SCGMIEHVGH-------DYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 107 ~~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+......-.. +....++..+.++|+|||.+++++.+
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9765332221 23456888899999999999986544
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.49 E-value=8.4e-14 Score=105.29 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=86.1
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEechh
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGMI 111 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~~ 111 (272)
.|.+|||+|||+|.++..++.+...+|+++|.++.+++.+++++...++.++++++++|+.... ..++||+|++....
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy 93 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 93 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence 6889999999999999988887335999999999999999999999999889999999987753 56889999998654
Q ss_pred hccChhhHHHHHHHHH--hcCccCcEEEEEe
Q 024096 112 EHVGHDYMEEFFGCCE--SLLATHGLLVLQF 140 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~ 140 (272)
.. ......++.+. ++|+|+|.+++..
T Consensus 94 ~~---~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 94 AK---ETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp HH---HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cc---chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 32 23345555553 5799999999854
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=1.3e-13 Score=116.65 Aligned_cols=108 Identities=21% Similarity=0.198 Sum_probs=88.7
Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIIS 107 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~ 107 (272)
.+|.+|||++||+|+++..++.. +.+|+++|+|+.+++.++++++.+|+. +++++++|..+.. ..++||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 36889999999999999998864 779999999999999999999999984 7999999987642 4579999999
Q ss_pred echhhccCh-------hhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 108 CGMIEHVGH-------DYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 108 ~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
.......+. +....++..+.++|||||.+++++.+
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 764332221 33457888999999999999886543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=3.1e-13 Score=105.71 Aligned_cols=118 Identities=26% Similarity=0.403 Sum_probs=97.9
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---- 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---- 97 (272)
++.+++.+...++..+||++||+|+.+..+++. ++++++|+|.++.+++.+++++...+ +++.++++++.++.
T Consensus 12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~ 89 (192)
T d1m6ya2 12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLK 89 (192)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHH
T ss_pred HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHH
Confidence 467788889999999999999999999999998 78999999999999999999987654 58999999998754
Q ss_pred --CCCCccEEEEechhhc--c-----ChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 98 --KANKYDRIISCGMIEH--V-----GHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~--~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
..++||.|+....+.- + ........+..+.++|+|||++++.++.
T Consensus 90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 3578999988654311 1 1145578899999999999999986654
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.43 E-value=3.9e-13 Score=103.48 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=78.7
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC--CC-CCCCccEEEEe
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ--LP-KANKYDRIISC 108 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~--~~-~~~~fD~V~~~ 108 (272)
+..|.+|||+|||+|.++..++.+ +++++++|.++.+++.++++++.+++..++....+|... .. ..++||+|++.
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccCCCeEEEeccccchhhhhhhhc-cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 457789999999999999998886 789999999999999999999999986655555554321 11 55789999998
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
..+..--.+....+++ ..+|+|||.+++..
T Consensus 118 PPY~~~~~~~l~~l~~--~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 118 PPYAMDLAALFGELLA--SGLVEAGGLYVLQH 147 (171)
T ss_dssp CCTTSCTTHHHHHHHH--HTCEEEEEEEEEEE
T ss_pred cccccCHHHHHHHHHH--cCCcCCCeEEEEEe
Confidence 7654311122222322 35899999998854
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.43 E-value=1.3e-12 Score=108.97 Aligned_cols=110 Identities=19% Similarity=0.242 Sum_probs=88.1
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEcccCCCC-----CCCCccEE
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD-HIRFYLCDYRQLP-----KANKYDRI 105 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~-~i~~~~~d~~~~~-----~~~~fD~V 105 (272)
...+.+|||++||+|.++..++.. +++|++||.|+.+++.|++|++.+++.+ +++++++|+.+.- ..++||+|
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~-GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC-CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 346789999999999999999885 8899999999999999999999998864 6999999987653 35789999
Q ss_pred EEechhhccC--------hhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 106 ISCGMIEHVG--------HDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 106 ~~~~~~~~~~--------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
++...-...+ .++...+++.+..+|+|||.+++.+.+
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 9865421110 134466778889999999987775544
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.36 E-value=2.2e-12 Score=102.73 Aligned_cols=123 Identities=14% Similarity=0.163 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 024096 15 LEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD 92 (272)
Q Consensus 15 l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d 92 (272)
+...+-+.+..+++... +.+|||+|||+|..+..+++. .+.+++++|+++...+.|+++++..|+.++++++.+|
T Consensus 40 i~~~~G~lL~~lv~~~k---pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd 116 (214)
T d2cl5a1 40 VGDAKGQIMDAVIREYS---PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGA 116 (214)
T ss_dssp CHHHHHHHHHHHHHHHC---CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred cCHHHHHHHHHHHHhhC---CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecc
Confidence 34445555556665543 469999999999999999986 4689999999999999999999999998899999999
Q ss_pred cCCCC-------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 93 YRQLP-------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 93 ~~~~~-------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
..+.- ..+.||+|+....-.. ......+.+..++|||||.+++.++..
T Consensus 117 ~~e~l~~l~~~~~~~~~D~ifiD~~~~~---~~~~~~l~~~~~lLkpGGvIv~Ddvl~ 171 (214)
T d2cl5a1 117 SQDLIPQLKKKYDVDTLDMVFLDHWKDR---YLPDTLLLEKCGLLRKGTVLLADNVIV 171 (214)
T ss_dssp HHHHGGGHHHHSCCCCEEEEEECSCGGG---HHHHHHHHHHTTCEEEEEEEEESCCCC
T ss_pred ccccccchhhcccccccceeeecccccc---cccHHHHHHHhCccCCCcEEEEeCcCC
Confidence 87642 2368999998632111 112345777889999999988755443
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.35 E-value=1.6e-12 Score=109.49 Aligned_cols=116 Identities=14% Similarity=0.100 Sum_probs=90.8
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC-----
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYRQLP----- 97 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~----- 97 (272)
..+.+. ..+|.+|||++||+|+++..++.....+|+++|+|+..++.++++++.+++. .+++++++|+.+.-
T Consensus 136 ~~l~~~--~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~ 213 (317)
T d2b78a2 136 NELING--SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR 213 (317)
T ss_dssp HHHHHT--TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH
T ss_pred HHHHHH--hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHh
Confidence 344444 3478999999999999999888753348999999999999999999999984 57999999986542
Q ss_pred CCCCccEEEEechhhcc-------ChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 98 KANKYDRIISCGMIEHV-------GHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~-------~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
..++||+|++...-..- ..++...+++.+.++|+|||.++++..
T Consensus 214 ~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 214 HHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp TTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 45789999997542110 013456789999999999999998654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.32 E-value=9.8e-12 Score=98.00 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=71.6
Q ss_pred HHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccE
Q 024096 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDR 104 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~ 104 (272)
.+....+.-.|.+|||+|||+|.++..++.+...+|+|+|+++.+++.++++++..+. +..+..+|..+++ ++||+
T Consensus 37 ~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~~--~~fD~ 112 (201)
T d1wy7a1 37 WLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN--SRVDI 112 (201)
T ss_dssp HHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC--CCCSE
T ss_pred HHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhhC--CcCcE
Confidence 3445555557889999999999999988876446999999999999999999988774 6899999988765 78999
Q ss_pred EEEechhhcc
Q 024096 105 IISCGMIEHV 114 (272)
Q Consensus 105 V~~~~~~~~~ 114 (272)
|+++..+...
T Consensus 113 Vi~nPP~~~~ 122 (201)
T d1wy7a1 113 VIMNPPFGSQ 122 (201)
T ss_dssp EEECCCCSSS
T ss_pred EEEcCccccc
Confidence 9999876543
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=3e-11 Score=98.30 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=69.3
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CCCCccEE
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------KANKYDRI 105 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~~~~fD~V 105 (272)
+..++||+|||+|..+..++.+ ++++++|+|+|+.+++.|+++++.+++.+++.+++.+..... .+++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 4469999999999999999988 899999999999999999999999999999999987654422 24689999
Q ss_pred EEechhhcc
Q 024096 106 ISCGMIEHV 114 (272)
Q Consensus 106 ~~~~~~~~~ 114 (272)
+|+..+...
T Consensus 141 vsNPPY~~~ 149 (250)
T d2h00a1 141 MCNPPFFAN 149 (250)
T ss_dssp EECCCCC--
T ss_pred EecCccccc
Confidence 999887643
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=5.7e-12 Score=100.50 Aligned_cols=118 Identities=15% Similarity=0.194 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC
Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272)
Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272)
.+-..+..+++.. ...+|||+|||+|..+.++++. .+.+++.+|.++...+.|+++++..|+.++++++.+|+.+
T Consensus 46 ~~g~lL~~L~~~~---~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e 122 (219)
T d2avda1 46 EQAQLLANLARLI---QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE 122 (219)
T ss_dssp HHHHHHHHHHHHT---TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHHHcc---CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhh
Confidence 3444444555443 4569999999999999999987 3689999999999999999999999999999999999755
Q ss_pred CC-------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 96 LP-------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 96 ~~-------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
.. ..++||+|+... ..+.....++.+.+.|+|||.+++.+...
T Consensus 123 ~l~~~~~~~~~~~fD~ifiD~-----dk~~y~~~~~~~~~lL~~GGvii~Dn~l~ 172 (219)
T d2avda1 123 TLDELLAAGEAGTFDVAVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLW 172 (219)
T ss_dssp HHHHHHHTTCTTCEEEEEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred cchhhhhhcccCCccEEEEeC-----CHHHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 32 246899999852 22455788899999999999999976653
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.29 E-value=7.8e-12 Score=102.58 Aligned_cols=116 Identities=15% Similarity=0.189 Sum_probs=86.3
Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCC
Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANK 101 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~ 101 (272)
+.+++.....+..+|+|+|||+|..+..+++.++++|+++|+|+..++.|++|++.+++.+++.+..+|+.+.. ..++
T Consensus 100 ~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~ 179 (271)
T d1nv8a_ 100 ELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFAS 179 (271)
T ss_dssp HHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTT
T ss_pred hhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCc
Confidence 44444433334568999999999999998877889999999999999999999999999888999999987754 3478
Q ss_pred ccEEEEechhh----cc-------Ch------hh-HHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIE----HV-------GH------DY-MEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~----~~-------~~------~~-~~~~l~~~~~~LkpgG~l~i~ 139 (272)
||+|+++...- .. |. ++ +.-+-+-+.+.|+|||.+++.
T Consensus 180 fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~E 235 (271)
T d1nv8a_ 180 IEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 235 (271)
T ss_dssp CCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred ccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEE
Confidence 99999996411 00 00 00 111122245789999999884
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.28 E-value=1.1e-11 Score=96.84 Aligned_cols=78 Identities=22% Similarity=0.286 Sum_probs=64.3
Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEE
Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRII 106 (272)
Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~ 106 (272)
+...+--.|.+|||+|||+|.++..++.....+|+|+|+++.+++.|++++ .++.++++|+.+++ ++||+|+
T Consensus 41 ~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~l~--~~fD~Vi 112 (197)
T d1ne2a_ 41 IYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC------GGVNFMVADVSEIS--GKYDTWI 112 (197)
T ss_dssp HHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC------TTSEEEECCGGGCC--CCEEEEE
T ss_pred HHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc------ccccEEEEehhhcC--CcceEEE
Confidence 333444468999999999999998888764468999999999999999874 36899999998876 7899999
Q ss_pred Eechhh
Q 024096 107 SCGMIE 112 (272)
Q Consensus 107 ~~~~~~ 112 (272)
++..+.
T Consensus 113 ~NPPfg 118 (197)
T d1ne2a_ 113 MNPPFG 118 (197)
T ss_dssp ECCCC-
T ss_pred eCcccc
Confidence 987753
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.28 E-value=1.1e-11 Score=96.12 Aligned_cols=112 Identities=17% Similarity=0.116 Sum_probs=89.6
Q ss_pred HHHHcC-CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CC
Q 024096 26 LIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KA 99 (272)
Q Consensus 26 l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~ 99 (272)
+.+.+. ...+.+|||++||+|.++..++.+...+|+++|.++..++.+++++...+..++++++++|+.+.- ..
T Consensus 32 lFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~ 111 (182)
T d2fhpa1 32 IFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEK 111 (182)
T ss_dssp HHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccC
Confidence 344443 347899999999999999999987445899999999999999999999888889999999986632 44
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHH--hcCccCcEEEEEe
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCE--SLLATHGLLVLQF 140 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~ 140 (272)
.+||+|++...... ......++.+. .+|+|+|.+++..
T Consensus 112 ~~fDlIflDPPY~~---~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 112 LQFDLVLLDPPYAK---QEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp CCEEEEEECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CCcceEEechhhhh---hHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 68999999887543 23456677764 4799999998753
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.23 E-value=2.5e-11 Score=97.07 Aligned_cols=116 Identities=15% Similarity=0.182 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC
Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL 96 (272)
Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 96 (272)
+-+.+..+++.. ...+|||+|+++|..+.++++. .+++++.+|.+++..+.|++++.+.|+.++++++.+++.+.
T Consensus 47 ~g~~L~~L~~~~---~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~ 123 (227)
T d1susa1 47 EGQFLSMLLKLI---NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV 123 (227)
T ss_dssp HHHHHHHHHHHH---TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHHHhc---CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHH
Confidence 334444555543 4569999999999999999987 36899999999999999999999999988999999998654
Q ss_pred C--------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 97 P--------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 97 ~--------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
- ..++||+|+... ........++.+.++|+|||.+++.+..
T Consensus 124 L~~l~~~~~~~~~fD~iFiDa-----~k~~y~~~~e~~~~ll~~gGiii~DNvl 172 (227)
T d1susa1 124 LDEMIKDEKNHGSYDFIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGYDNTL 172 (227)
T ss_dssp HHHHHHCGGGTTCBSEEEECS-----CSTTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred HHHHHhccccCCceeEEEecc-----chhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence 2 146899999863 2245678999999999999999986554
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=2.6e-11 Score=94.15 Aligned_cols=103 Identities=16% Similarity=0.128 Sum_probs=84.2
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEechh
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGMI 111 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~~ 111 (272)
.+.+|||++||+|.++..++.+...+|+.+|.++..++.+++++...+. .++.++.+|+.+.. ...+||+|++....
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeeecccccccccccccCEEEEcCcc
Confidence 5679999999999999998887445899999999999999999998776 47899999976643 45789999999875
Q ss_pred hccChhhHHHHHHHHH--hcCccCcEEEEEe
Q 024096 112 EHVGHDYMEEFFGCCE--SLLATHGLLVLQF 140 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~ 140 (272)
.. ......+..+. .+|+++|.+++..
T Consensus 122 ~~---~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 122 RR---GLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp ST---TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cc---chHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 43 23456666665 4699999999853
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.20 E-value=1.5e-10 Score=90.53 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=78.7
Q ss_pred CCCCEEEEECCCchH----HHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHH--------------HH----cCC---
Q 024096 33 SKGQEVLDIGCGWGT----LAIEIVKQ-----TGCKYTGITLSEEQLKYAEIKV--------------RE----AGL--- 82 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~----~~~~l~~~-----~~~~v~gvd~s~~~~~~a~~~~--------------~~----~g~--- 82 (272)
.+..+|+++|||+|. ++..+.+. ...+++|+|+++..++.|++-. .. .+.
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 455699999999997 44444443 1247999999999999997421 00 010
Q ss_pred ---------CCCeEEEEcccCCCC--CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 83 ---------QDHIRFYLCDYRQLP--KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 83 ---------~~~i~~~~~d~~~~~--~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
...+.+...+..... +.++||+|+|.+++.+++++....+++++++.|+|||+|++
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~l 169 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 169 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 012455556655433 45789999999999999988889999999999999999987
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=9.7e-10 Score=93.98 Aligned_cols=115 Identities=17% Similarity=0.251 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC
Q 024096 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL 96 (272)
Q Consensus 17 ~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 96 (272)
.+....++.+++.+...++.+|||+-||.|.++..|++. ..+|+|+|.++.+++.|+++++.+++. ++.++.+|..+.
T Consensus 195 ~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~-n~~~~~~~~~~~ 272 (358)
T d1uwva2 195 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEED 272 (358)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSC
T ss_pred hhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhcccc-cceeeecchhhh
Confidence 344455677888888888999999999999999999986 779999999999999999999999985 899999998764
Q ss_pred C-----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 97 P-----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 97 ~-----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
. ....+|+|+....=.-+ ...++.+.+. +|.-.++++
T Consensus 273 ~~~~~~~~~~~d~vilDPPR~G~-----~~~~~~l~~~-~~~~ivYVS 314 (358)
T d1uwva2 273 VTKQPWAKNGFDKVLLDPARAGA-----AGVMQQIIKL-EPIRIVYVS 314 (358)
T ss_dssp CSSSGGGTTCCSEEEECCCTTCC-----HHHHHHHHHH-CCSEEEEEE
T ss_pred hhhhhhhhccCceEEeCCCCccH-----HHHHHHHHHc-CCCEEEEEe
Confidence 3 24679999998765544 2345555543 677677775
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=99.09 E-value=8.3e-10 Score=88.63 Aligned_cols=87 Identities=20% Similarity=0.300 Sum_probs=71.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-K 98 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~ 98 (272)
...++.+++.+++.++++|||||||+|.++..|++. +.+++++|+++.+++..+++.... +++.++++|+.+.+ +
T Consensus 7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~~ 82 (235)
T d1qama_ 7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFP 82 (235)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCC
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhcccc
Confidence 345688899999999999999999999999999986 789999999999999998876433 58999999999987 3
Q ss_pred CCCccEEEEech
Q 024096 99 ANKYDRIISCGM 110 (272)
Q Consensus 99 ~~~fD~V~~~~~ 110 (272)
......|+++-.
T Consensus 83 ~~~~~~vv~NLP 94 (235)
T d1qama_ 83 KNQSYKIFGNIP 94 (235)
T ss_dssp SSCCCEEEEECC
T ss_pred ccccceeeeeeh
Confidence 333445666544
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=8.4e-10 Score=86.67 Aligned_cols=100 Identities=17% Similarity=0.321 Sum_probs=88.0
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272)
-++.+|+|+|||.|-.+..+|-. |+.+++.+|.+..-+...+......++. ++++++..+++.....+||+|++..+
T Consensus 64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fD~V~sRA~- 141 (207)
T d1jsxa_ 64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPSEPPFDGVISRAF- 141 (207)
T ss_dssp CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCCCSCEEEEECSCS-
T ss_pred hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhccccccceehhhhh-
Confidence 35679999999999999999876 8899999999999999999999999984 89999999999877778999998643
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.....+++-+...++++|++++.
T Consensus 142 -----~~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 142 -----ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp -----SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred -----cCHHHHHHHHHHhcCCCcEEEEE
Confidence 33478999999999999999873
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.98 E-value=3e-09 Score=89.76 Aligned_cols=112 Identities=15% Similarity=0.119 Sum_probs=86.9
Q ss_pred HHcCCCCCCEEEEECCCchHHHHHHHHc------cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC
Q 024096 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQ------TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272)
Q Consensus 28 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~------~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272)
..+...++.+|||.|||+|++...+.++ ...+++|+|+++.++..|+.++...+. ...+.++|........+
T Consensus 111 ~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~ 188 (328)
T d2f8la1 111 KVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANLLVDP 188 (328)
T ss_dssp HHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCCCCCC
T ss_pred HHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhhhcccccccccccc
Confidence 3345677889999999999999887653 234799999999999999998887764 56788888777666789
Q ss_pred ccEEEEechhhccChhh----------------HHHHHHHHHhcCccCcEEEEEee
Q 024096 102 YDRIISCGMIEHVGHDY----------------MEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
||+|+++..+......+ ...++..+.+.|+|||++++..+
T Consensus 189 fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 189 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 99999998764332111 12379999999999999887443
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.95 E-value=5.6e-09 Score=87.34 Aligned_cols=119 Identities=12% Similarity=0.120 Sum_probs=94.2
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCc
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKY 102 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~f 102 (272)
....+...+|.+|||++||.|+-+..++.. ....++++|+++..+...+.+++..|.. ++.....|....+ ....|
T Consensus 108 ~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-~i~~~~~d~~~~~~~~~~f 186 (313)
T d1ixka_ 108 PPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEF 186 (313)
T ss_dssp HHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCE
T ss_pred hhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-ccccccccccccccccccc
Confidence 445567889999999999999999999876 4568999999999999999999999884 7888888887776 56789
Q ss_pred cEEEEechhhcc------C-------h-------hhHHHHHHHHHhcCccCcEEEEEeecCCC
Q 024096 103 DRIISCGMIEHV------G-------H-------DYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272)
Q Consensus 103 D~V~~~~~~~~~------~-------~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272)
|.|++....... + . +-...++.+....|||||+++.++.+...
T Consensus 187 D~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~ 249 (313)
T d1ixka_ 187 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP 249 (313)
T ss_dssp EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred cEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence 999986432111 1 1 22346888999999999999998777443
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.93 E-value=6.7e-10 Score=91.41 Aligned_cols=111 Identities=20% Similarity=0.220 Sum_probs=84.1
Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc---------CCCCCeEEEEcccCCCC-CCCC
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA---------GLQDHIRFYLCDYRQLP-KANK 101 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~---------g~~~~i~~~~~d~~~~~-~~~~ 101 (272)
.....+||.+|+|.|..+..+.+.+..+|+.+|+++..++.+++..... ...++++++.+|+...- ..++
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 3566799999999999999888775679999999999999999865321 22468999999987654 4578
Q ss_pred ccEEEEechhhccChh--hHHHHHHHHHhcCccCcEEEEEeec
Q 024096 102 YDRIISCGMIEHVGHD--YMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
||+|++...-..-+.. .-.++++.+.+.|+|||.+++...+
T Consensus 150 yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s 192 (276)
T d1mjfa_ 150 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 192 (276)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence 9999986432211111 1157999999999999999986543
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.92 E-value=3.2e-09 Score=82.00 Aligned_cols=104 Identities=14% Similarity=0.146 Sum_probs=82.6
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEcccCCC---C-CCCCccEEEEe
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD-HIRFYLCDYRQL---P-KANKYDRIISC 108 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~-~i~~~~~d~~~~---~-~~~~fD~V~~~ 108 (272)
.+.+|||+.||+|.++...+++...+|+.+|.++..+...+++++..+..+ ...+...|..+. . ...+||+|++.
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 567999999999999999999844599999999999999999999888754 467777765432 2 34579999999
Q ss_pred chhhccChhhHHHHHHHHH--hcCccCcEEEEEe
Q 024096 109 GMIEHVGHDYMEEFFGCCE--SLLATHGLLVLQF 140 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~ 140 (272)
..... ......++.+. .+|+++|.+++..
T Consensus 123 PPY~~---~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 123 PPFHF---NLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp CCSSS---CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhHhh---hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 88654 23456777765 4799999999854
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.91 E-value=1.1e-09 Score=91.45 Aligned_cols=110 Identities=22% Similarity=0.205 Sum_probs=84.9
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc--C--CCCCeEEEEcccCCCC--CCCCccE
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA--G--LQDHIRFYLCDYRQLP--KANKYDR 104 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~--g--~~~~i~~~~~d~~~~~--~~~~fD~ 104 (272)
.+...+||.||.|.|..+..+.+. +..+|+++|+++..++.+++.+... + -.++++++.+|+.+.- .+++||+
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 345679999999999999999887 5679999999999999999987431 1 1358999999988754 5578999
Q ss_pred EEEechhhcc---Chh--hHHHHHHHHHhcCccCcEEEEEee
Q 024096 105 IISCGMIEHV---GHD--YMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 105 V~~~~~~~~~---~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
|++...-.+. +.. .-.++++.+.+.|+|||.+++...
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence 9976421111 111 126799999999999999988643
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.88 E-value=1.5e-10 Score=93.58 Aligned_cols=91 Identities=18% Similarity=0.267 Sum_probs=74.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KAN 100 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~ 100 (272)
.++.+++.+.+.++++|||||||+|.++..|++. +.+++++|+++.+++.++++... .++++++++|+.+.+ +..
T Consensus 17 ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~~~l~~~~~~---~~n~~ii~~D~l~~~~~~~ 92 (245)
T d1yuba_ 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh-cCceeEeeecccchhhhhhhhhh---ccchhhhhhhhhccccccc
Confidence 3567899999999999999999999999999997 78999999999998888766532 258999999999988 556
Q ss_pred CccEEEEechhhccChh
Q 024096 101 KYDRIISCGMIEHVGHD 117 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~ 117 (272)
.++.|+++.. .|++.+
T Consensus 93 ~~~~vv~NLP-Y~Ist~ 108 (245)
T d1yuba_ 93 QRYKIVGNIP-YHLSTQ 108 (245)
T ss_dssp SEEEEEEECC-SSSCHH
T ss_pred eeeeEeeeee-hhhhHH
Confidence 6677777665 456543
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=1.4e-08 Score=83.74 Aligned_cols=120 Identities=15% Similarity=0.146 Sum_probs=91.1
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCc
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKY 102 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~f 102 (272)
....+...++.+|||+++|.|+-+..+++. .+.+++++|+++..+...+++++..|.. ++.....|..... ....|
T Consensus 94 ~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~~~~~~~~f 172 (284)
T d1sqga2 94 CMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQF 172 (284)
T ss_dssp HHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHHTTCCE
T ss_pred cccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccchhcccccc
Confidence 445667889999999999999999999887 5579999999999999999999999974 4555444433222 45789
Q ss_pred cEEEEechh------hccCh--------------hhHHHHHHHHHhcCccCcEEEEEeecCCCC
Q 024096 103 DRIISCGMI------EHVGH--------------DYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272)
Q Consensus 103 D~V~~~~~~------~~~~~--------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272)
|.|++.... ..-++ +-...+++++.+.|||||+++.++.+....
T Consensus 173 d~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ 236 (284)
T d1sqga2 173 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE 236 (284)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG
T ss_pred cEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh
Confidence 999986422 11111 223568999999999999999988775443
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.85 E-value=4e-09 Score=83.67 Aligned_cols=110 Identities=20% Similarity=0.345 Sum_probs=83.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA 99 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~ 99 (272)
..+.|++.+...++.+|||.|||+|.++..+.+. ....++|+|+++..+.. ..+..+.++|.......
T Consensus 7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~~~~~ 76 (223)
T d2ih2a1 7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLLWEPG 76 (223)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGGCCCS
T ss_pred HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhccccc
Confidence 3466888888889999999999999998888765 34689999999864332 23568889998887777
Q ss_pred CCccEEEEechhhccCh---------------------------hhHHHHHHHHHhcCccCcEEEEEee
Q 024096 100 NKYDRIISCGMIEHVGH---------------------------DYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~---------------------------~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
..||+|+++..+..... .-...++.+..+.|+|||++++..+
T Consensus 77 ~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 77 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 89999999976543210 0123567888999999999987543
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=3.5e-08 Score=80.70 Aligned_cols=89 Identities=15% Similarity=0.240 Sum_probs=75.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272)
+.++.+++.+.+.+++.|||||+|+|.++..|++. +.+++++|+++.+++..++........+++.++.+|+...+.+
T Consensus 8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~- 85 (278)
T d1zq9a1 8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP- 85 (278)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc-CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh-
Confidence 45678889999999999999999999999999997 7899999999999999999887665556899999999887633
Q ss_pred CccEEEEechh
Q 024096 101 KYDRIISCGMI 111 (272)
Q Consensus 101 ~fD~V~~~~~~ 111 (272)
.++.|+++-..
T Consensus 86 ~~~~vV~NLPY 96 (278)
T d1zq9a1 86 FFDTCVANLPY 96 (278)
T ss_dssp CCSEEEEECCG
T ss_pred hhhhhhcchHH
Confidence 35677776554
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.83 E-value=2.4e-09 Score=88.52 Aligned_cols=109 Identities=19% Similarity=0.255 Sum_probs=83.5
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEcccCCCC--CCCCccEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAG--L-QDHIRFYLCDYRQLP--KANKYDRII 106 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g--~-~~~i~~~~~d~~~~~--~~~~fD~V~ 106 (272)
+...+||-||.|.|..+..+.+. +..+|+++|+++..++.+++...... + .++++++.+|..+.- .+++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 45679999999999999999987 45799999999999999999765431 1 368999999987755 457899999
Q ss_pred EechhhccCh-h--hHHHHHHHHHhcCccCcEEEEEee
Q 024096 107 SCGMIEHVGH-D--YMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 107 ~~~~~~~~~~-~--~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
+...-...+. . .-.++++.+.+.|+|||.+++...
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 8643221111 1 126899999999999999998643
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.81 E-value=1.7e-08 Score=77.47 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=90.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----- 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----- 97 (272)
++.+++.+.+.+|..++|..+|.|+.+..+.+. +.+|+|+|.++.++..+++. ..+++.+++.++.++.
T Consensus 7 l~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~ 80 (182)
T d1wg8a2 7 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAA 80 (182)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHH
Confidence 567788888999999999999999999999986 77999999999999888764 2358999999988865
Q ss_pred -CCCCccEEEEechhhcc--C--h---hhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 98 -KANKYDRIISCGMIEHV--G--H---DYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~--~--~---~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
..+.+|.|+....+... . . ......+......|+|||++++..+.
T Consensus 81 ~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 81 LGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp TTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred cCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 24689999986543221 0 0 22345788889999999999986554
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.76 E-value=1.1e-08 Score=81.68 Aligned_cols=100 Identities=16% Similarity=0.222 Sum_probs=85.8
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRIIS 107 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V~~ 107 (272)
..+.+|+|+|+|.|-.++.++-. ++.+++.+|.+..-+...+......++. ++.+++..++++. ..++||+|++
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccccccccceEEEE
Confidence 35679999999999999998875 8899999999999999999999999995 8999998887765 2368999999
Q ss_pred echhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 108 CGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+ ..+..+++-+...+++||.+++.
T Consensus 148 RAv------a~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 148 RAV------ARLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp ECC------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred hhh------hCHHHHHHHHhhhcccCCEEEEE
Confidence 743 34578999999999999999873
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=6.5e-09 Score=85.57 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=84.5
Q ss_pred CCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc---CCCCCeEEEEcccCCCC--CCCCccE
Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA---GLQDHIRFYLCDYRQLP--KANKYDR 104 (272)
Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~---g~~~~i~~~~~d~~~~~--~~~~fD~ 104 (272)
......+||-+|.|.|..+..+.+. +..+++.+|+++..++.+++..... --.++++++.+|+...- ..++||+
T Consensus 75 ~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (285)
T d2o07a1 75 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV 154 (285)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred hCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCE
Confidence 3455689999999999999999987 5679999999999999999986432 12469999999977654 4578999
Q ss_pred EEEechhhccChh--hHHHHHHHHHhcCccCcEEEEEeec
Q 024096 105 IISCGMIEHVGHD--YMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 105 V~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
|++...-..-+.. .-.++++.+.+.|+|||.+++....
T Consensus 155 Ii~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 155 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp EEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 9986422111111 1247899999999999999987543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.75 E-value=5.5e-09 Score=86.73 Aligned_cols=108 Identities=19% Similarity=0.216 Sum_probs=81.3
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEcccCCCC--CCCCccEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAG--L-QDHIRFYLCDYRQLP--KANKYDRII 106 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g--~-~~~i~~~~~d~~~~~--~~~~fD~V~ 106 (272)
....+||-||.|.|..+..+.+. +..+|+.+|+++..++.+++...... . .++++++.+|..+.- ..++||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 45679999999999999999987 44699999999999999999864321 1 358999999987755 567899999
Q ss_pred EechhhccChh--hHHHHHHHHHhcCccCcEEEEEe
Q 024096 107 SCGMIEHVGHD--YMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 107 ~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+...-..-+.. .-.++++.+.+.|+|||.++...
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 86432221111 22678999999999999999864
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=9.5e-08 Score=78.97 Aligned_cols=119 Identities=12% Similarity=0.046 Sum_probs=89.0
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC----C
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK----A 99 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~----~ 99 (272)
....+...+|.+|||+++|.|+-+.++++. ...+++++|+++.-++..+++++..|+. ++.+...|...+.+ .
T Consensus 86 ~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~~~~ 164 (293)
T d2b9ea1 86 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRY 164 (293)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGG
T ss_pred cccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhccccccc
Confidence 445567789999999999999999998876 4579999999999999999999999984 79999999887652 2
Q ss_pred CCccEEEEechhh------ccC---------h-------hhHHHHHHHHHhcCccCcEEEEEeecCCCC
Q 024096 100 NKYDRIISCGMIE------HVG---------H-------DYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272)
Q Consensus 100 ~~fD~V~~~~~~~------~~~---------~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272)
+.||.|+...... ..+ + .....++..+. .++|||.++.++.+....
T Consensus 165 ~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ 232 (293)
T d2b9ea1 165 HEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQE 232 (293)
T ss_dssp TTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGG
T ss_pred ceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChh
Confidence 5799999874311 110 0 01123455555 479999999887765433
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.73 E-value=1.1e-08 Score=84.47 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=83.7
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc---CCCCCeEEEEcccCCCC---CCCCccEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA---GLQDHIRFYLCDYRQLP---KANKYDRI 105 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~---g~~~~i~~~~~d~~~~~---~~~~fD~V 105 (272)
....+||-||-|.|..+..+.+. +..+++++|+++..++.+++..... .-.++++++.+|..+.- .+++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 45679999999999999999988 4468999999999999999976432 12468999999976543 34689999
Q ss_pred EEechhhccChh--hHHHHHHHHHhcCccCcEEEEEee
Q 024096 106 ISCGMIEHVGHD--YMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 106 ~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
++...-..-+.. .-.++++.+.+.|+|||.+++...
T Consensus 159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 985432111111 126799999999999999998654
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.73 E-value=1e-08 Score=83.94 Aligned_cols=108 Identities=20% Similarity=0.226 Sum_probs=84.3
Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc-C--CCCCeEEEEcccCCCC--CCCCccEEE
Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA-G--LQDHIRFYLCDYRQLP--KANKYDRII 106 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~-g--~~~~i~~~~~d~~~~~--~~~~fD~V~ 106 (272)
....+||-||.|.|..+..+.+. +..+++.+|+++..++.+++..... + -.++++++.+|....- .+++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 45679999999999999999987 4579999999999999999986432 1 1458999999987644 457899999
Q ss_pred EechhhccChh--hHHHHHHHHHhcCccCcEEEEEe
Q 024096 107 SCGMIEHVGHD--YMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 107 ~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+...-..-+.. .-.++++.+.+.|+|+|.++...
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 87432211101 12689999999999999999864
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=1.2e-07 Score=72.59 Aligned_cols=109 Identities=19% Similarity=0.256 Sum_probs=81.0
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 22 KVSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 22 ~~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
++..+.++.. ++++.+|||+||++|+++..+.+. ....++++|+.+- ... +++.++++|+.+..
T Consensus 9 KL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i-~~~~~~~~d~~~~~~ 76 (180)
T d1ej0a_ 9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPI-VGVDFLQGDFRDELV 76 (180)
T ss_dssp HHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCC-TTEEEEESCTTSHHH
T ss_pred HHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------ccc-CCceEeecccccchh
Confidence 3455666766 478999999999999999999886 4578999998661 122 47899999987643
Q ss_pred --------CCCCccEEEEechhhccChhhH---------HHHHHHHHhcCccCcEEEEEeec
Q 024096 98 --------KANKYDRIISCGMIEHVGHDYM---------EEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 98 --------~~~~fD~V~~~~~~~~~~~~~~---------~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
...++|+|+|..+....+..+. ...+.-+.++|++||.+++-.+.
T Consensus 77 ~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 77 MKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred hhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 3468999999877654433222 23556667999999999986554
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.62 E-value=1.1e-07 Score=82.72 Aligned_cols=120 Identities=14% Similarity=0.156 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-c-------------CCEEEEEcCCHHHHHHHHHHHHHcCCC-CCe
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-T-------------GCKYTGITLSEEQLKYAEIKVREAGLQ-DHI 86 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~-------------~~~v~gvd~s~~~~~~a~~~~~~~g~~-~~i 86 (272)
..+.|++.+...++.+|+|.+||+|++...+.++ . ...+.|+|+++.....|+.++...|.. ...
T Consensus 150 Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~ 229 (425)
T d2okca1 150 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 229 (425)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred hhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence 3456777777788899999999999999887664 1 135899999999999999998877764 346
Q ss_pred EEEEcccCCCCCCCCccEEEEechhhccCh---------------hhHHHHHHHHHhcCccCcEEEEEee
Q 024096 87 RFYLCDYRQLPKANKYDRIISCGMIEHVGH---------------DYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 87 ~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~---------------~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
.+...|........+||+|+++..+..... ..-..++..+...|++||++++..+
T Consensus 230 ~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 230 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 788888877667789999999988743211 1123589999999999999887544
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=2.7e-08 Score=80.33 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272)
+.++.+++.+...+++.|||||||.|.++..|++. +.+++++|+++.+++..++.... .+++.++.+|+.+.+
T Consensus 8 ~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~D~l~~~ 80 (252)
T d1qyra_ 8 FVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPFL---GPKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTTT---GGGEEEECSCGGGCC
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhhh---ccchhHHhhhhhhhc
Confidence 45678899999999999999999999999999986 78999999999999998775432 258999999999876
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.41 E-value=2.9e-07 Score=73.16 Aligned_cols=109 Identities=11% Similarity=0.085 Sum_probs=73.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-----TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-----~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272)
..+..++..+. +.+|||||++.|+.+..+++. ..++++++|+++....... ...++++++++|..+
T Consensus 70 ~~~~eli~~~K---Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~------~~~~~I~~i~gDs~~ 140 (232)
T d2bm8a1 70 AVYHDMLWELR---PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSD 140 (232)
T ss_dssp HHHHHHHHHHC---CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSC
T ss_pred HHHHHHHHHhC---CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh------ccccceeeeeccccc
Confidence 34566676654 459999999999988776642 3679999999775433221 113589999999766
Q ss_pred CC-----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 96 LP-----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 96 ~~-----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
.. ....+|.|+.... |+. ... ...+ +...+|++||++++.|..
T Consensus 141 ~~~~~~l~~~~~dlIfID~~-H~~-~~v-~~~~-~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 141 LTTFEHLREMAHPLIFIDNA-HAN-TFN-IMKW-AVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp SGGGGGGSSSCSSEEEEESS-CSS-HHH-HHHH-HHHHTCCTTCEEEECSCH
T ss_pred HHHHHHHHhcCCCEEEEcCC-cch-HHH-HHHH-HHhcccCcCCEEEEEcCC
Confidence 44 3456898887654 433 222 2223 356899999999997653
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.35 E-value=5.6e-07 Score=76.55 Aligned_cols=101 Identities=17% Similarity=0.052 Sum_probs=80.6
Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC--------------CeEEEEcccCCCC-
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQD--------------HIRFYLCDYRQLP- 97 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~--------------~i~~~~~d~~~~~- 97 (272)
.+.+|||..||+|..++..+.+ ...+|+..|+|+..++.+++|++.++..+ .+.+.+.|+..+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 5679999999999999987776 55699999999999999999999887632 3566777765444
Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
..+.||+|.... .+ ....+++...+.++.||.+.++.
T Consensus 125 ~~~~~fDvIDiDP----fG--s~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLDP----FG--SPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEECC----SS--CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCcCCcccCCC----CC--CcHHHHHHHHHHhccCCEEEEEe
Confidence 446899998865 22 22578888999999999999953
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.25 E-value=5.2e-06 Score=65.59 Aligned_cols=120 Identities=15% Similarity=0.174 Sum_probs=73.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK 98 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 98 (272)
..++.++.++.-+.++.+|+|+|||.|+++..++.. ....+.|+++--...+.- ......+. +-+.+...+-....+
T Consensus 52 ~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P-~~~~~~~~-ni~~~~~~~dv~~l~ 129 (257)
T d2p41a1 52 SAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEP-IPMSTYGW-NLVRLQSGVDVFFIP 129 (257)
T ss_dssp HHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCSTTG-GGEEEECSCCTTTSC
T ss_pred HHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCC-cccccccc-ccccchhhhhHHhcC
Confidence 345677778877889999999999999999999987 345788888732110000 00000011 123444443222224
Q ss_pred CCCccEEEEechhhccChhh-----HHHHHHHHHhcCccCcEEEEEeec
Q 024096 99 ANKYDRIISCGMIEHVGHDY-----MEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
+...|+|+|.-+ ++.+... ...+++-+.++|+|||.+++-.+.
T Consensus 130 ~~~~D~vlcDm~-ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 130 PERCDTLLCDIG-ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp CCCCSEEEECCC-CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred CCcCCEEEeeCC-CCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 578999999753 2222211 125677778999999998875443
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=9.1e-07 Score=78.86 Aligned_cols=120 Identities=12% Similarity=0.045 Sum_probs=85.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-c------------------CCEEEEEcCCHHHHHHHHHHHHHcCC
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-T------------------GCKYTGITLSEEQLKYAEIKVREAGL 82 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~------------------~~~v~gvd~s~~~~~~a~~~~~~~g~ 82 (272)
.++.|++.+...++.+|+|.+||+|++...+.+. . ...++|+|+++.....|+.++-..+.
T Consensus 152 Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~ 231 (524)
T d2ar0a1 152 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 231 (524)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred hhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcc
Confidence 3466777788888999999999999998776553 0 12589999999999999988876664
Q ss_pred CCC----eEEEEcccCCCC--CCCCccEEEEechhhccCh------------hhHHHHHHHHHhcCccCcEEEEEee
Q 024096 83 QDH----IRFYLCDYRQLP--KANKYDRIISCGMIEHVGH------------DYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 83 ~~~----i~~~~~d~~~~~--~~~~fD~V~~~~~~~~~~~------------~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
..+ ..+..++....+ ...+||+|+++..+..... ..--.++..+.+.|+|||++.+..+
T Consensus 232 ~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 232 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence 322 133444443322 3468999999987742211 1123589999999999999887544
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=98.23 E-value=6.6e-05 Score=62.81 Aligned_cols=211 Identities=13% Similarity=0.152 Sum_probs=125.8
Q ss_pred CEEEEECCCchHHHHHHHH---------------c--cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCC--eEEEEcccCC
Q 024096 36 QEVLDIGCGWGTLAIEIVK---------------Q--TGCKYTGITLSEEQLKYAEIKVREA-GLQDH--IRFYLCDYRQ 95 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~---------------~--~~~~v~gvd~s~~~~~~a~~~~~~~-g~~~~--i~~~~~d~~~ 95 (272)
-+|.|+||.+|..+..+.+ . +..+|.--|+-.+-....=+.+... ....+ +..+.+.+-.
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 5799999999988753321 1 2346666676332211111111111 11111 3445566554
Q ss_pred CC-CCCCccEEEEechhhccCh-------------------------------hhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 96 LP-KANKYDRIISCGMIEHVGH-------------------------------DYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 96 ~~-~~~~fD~V~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
-- |+++.++++|..++||++. +|+..+|+.=++-|+|||++++.....
T Consensus 133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr 212 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR 212 (359)
T ss_dssp CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 43 7899999999999999742 356678888889999999999988776
Q ss_pred CCCccccccC--------------------cchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecC----------
Q 024096 144 PDQCYDEYRL--------------------SPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIG---------- 193 (272)
Q Consensus 144 ~~~~~~~~~~--------------------~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~---------- 193 (272)
++........ ....+..+-+| -+.|+.+++...+.++..|.+..++.+.
T Consensus 213 ~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P-~Y~ps~eEv~~~ie~~gsF~i~~~e~~~~~~~~~~~~~ 291 (359)
T d1m6ex_ 213 RSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIP-QYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDG 291 (359)
T ss_dssp SSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCC-CBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCT
T ss_pred CCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCc-cccCCHHHHHHHhccCCCeeeeeeEeeecccccccccc
Confidence 5432111000 00111222223 3468899998888888889888876432
Q ss_pred ----------ccHHHHHHHHHHHHHhhHHHHHhccCChHHH-HHHHHHHHHHHHHHhcCCccEEEEEE--EeCC
Q 024096 194 ----------IHYYQTLRCWRKNFMGKQSEILALGFNEKFI-RTWEYYFDYCAASFKSRIIGDYQIVF--SRPG 254 (272)
Q Consensus 194 ----------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~w~~~~~~~~~~f~~g~~~~~~~~~--~k~~ 254 (272)
..+..+++.|.+.+. ...|++... ..|..|-...++........+.++++ +|++
T Consensus 292 ~~~~d~~~~~~~~a~~~RA~~e~~l-------~~hfg~~i~D~lF~r~~~~v~~~~~~~~~~~~~~~~sL~rK~ 358 (359)
T d1m6ex_ 292 DGGGSVEEEGYNVARCMRAVAEPLL-------LDHFGEAIIEDVFHRYKLLIIERMSKEKTKFINVIVSLIRKS 358 (359)
T ss_dssp TCCSSTTTTTTHHHHHHHHHHHHHH-------HHHHCHHHHHHHHHHHHHHHHHHHHSSCCEEEEEEEEEEBCC
T ss_pred cccccHHHHHHHHHHHHHHHHHHHH-------HHHcChHHHHHHHHHHHHHHHhhHhhcCCceEEEEEEEEecC
Confidence 235556666665443 233554433 45777877777777777776665554 5543
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.08 E-value=1.8e-06 Score=68.86 Aligned_cols=90 Identities=12% Similarity=0.151 Sum_probs=70.3
Q ss_pred HHHHHHcCCCCC--CEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcC--------CCCCeEEEEccc
Q 024096 24 SVLIEKARVSKG--QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAG--------LQDHIRFYLCDY 93 (272)
Q Consensus 24 ~~l~~~l~~~~~--~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g--------~~~~i~~~~~d~ 93 (272)
+.+.+.++++.+ .+|||.-||.|..+..++.. +++|+++|-++......++.++... ...+++++++|.
T Consensus 76 ~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~-G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds 154 (250)
T d2oyra1 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred hHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC-CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence 456777776655 48999999999999999986 8999999999988777666554321 113789999997
Q ss_pred CCCC--CCCCccEEEEechhhcc
Q 024096 94 RQLP--KANKYDRIISCGMIEHV 114 (272)
Q Consensus 94 ~~~~--~~~~fD~V~~~~~~~~~ 114 (272)
.+.. ..++||+|+...++.+-
T Consensus 155 ~~~L~~~~~~~DvIYlDPMFp~~ 177 (250)
T d2oyra1 155 LTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_dssp HHHSTTCSSCCSEEEECCCCCCC
T ss_pred HHHHhccCCCCCEEEECCCCccc
Confidence 6644 34679999999998765
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.07 E-value=5.8e-06 Score=62.15 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=71.1
Q ss_pred HHHHHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-cCCCC--CCC
Q 024096 25 VLIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD-YRQLP--KAN 100 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d-~~~~~--~~~ 100 (272)
..+++..+++|++||-+|+| .|..+..+++..|++++++|.++..++.+++. |.. +++... -.+.. ..+
T Consensus 18 ~al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~~~~ 90 (168)
T d1piwa2 18 SPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYFD 90 (168)
T ss_dssp HHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSCS
T ss_pred HHHHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc----CCc---EEeeccchHHHHHhhhc
Confidence 34556788999999999999 67788888877899999999999988888765 432 333221 11111 346
Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+|.|+......+ ...+....+.|+|+|++++.
T Consensus 91 ~~d~vi~~~~~~~------~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 91 TFDLIVVCASSLT------DIDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp CEEEEEECCSCST------TCCTTTGGGGEEEEEEEEEC
T ss_pred ccceEEEEecCCc------cchHHHHHHHhhccceEEEe
Confidence 7998886432221 11244578899999999874
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.94 E-value=7.5e-05 Score=55.78 Aligned_cols=99 Identities=24% Similarity=0.266 Sum_probs=70.8
Q ss_pred HHHHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------
Q 024096 26 LIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------- 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------- 97 (272)
.+++..++++++||-+||| .|.++..+++..+++|+++|.++...+.+++. |. . ..+..+.....
T Consensus 18 a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga--~-~~~~~~~~~~~~~~~~~~ 90 (170)
T d1e3ja2 18 ACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GA--D-VTLVVDPAKEEESSIIER 90 (170)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC--S-EEEECCTTTSCHHHHHHH
T ss_pred HHHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CC--c-EEEeccccccccchhhhh
Confidence 4567788999999999999 66677777877889999999999998888765 32 1 22222221111
Q ss_pred ----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 ----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+-. .+. ...++.+.+.++|+|++++.
T Consensus 91 ~~~~~g~g~D~vid~-----~g~---~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 91 IRSAIGDLPNVTIDC-----SGN---EKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp HHHHSSSCCSEEEEC-----SCC---HHHHHHHHHHSCTTCEEEEC
T ss_pred hhcccccCCceeeec-----CCC---hHHHHHHHHHHhcCCceEEE
Confidence 13568988753 221 45677788899999999874
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.84 E-value=1.4e-05 Score=60.74 Aligned_cols=100 Identities=21% Similarity=0.182 Sum_probs=68.9
Q ss_pred HHHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC--------
Q 024096 26 LIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-------- 95 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-------- 95 (272)
+.+...+++|++||-+|+| .|..+..+++..|+ +|+++|.+++..+.+++. |. ..++...-.+
T Consensus 20 l~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga---~~vi~~~~~~~~~~~~~i 92 (182)
T d1vj0a2 20 FDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GA---DLTLNRRETSVEERRKAI 92 (182)
T ss_dssp HHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TC---SEEEETTTSCHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cc---eEEEeccccchHHHHHHH
Confidence 3344567899999999998 47788888888776 899999999999888764 42 1233221111
Q ss_pred --CCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe
Q 024096 96 --LPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 96 --~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
......+|+|+-. .+. ...++...+.|+|||++++.-
T Consensus 93 ~~~~~~~g~Dvvid~-----vG~---~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 93 MDITHGRGADFILEA-----TGD---SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp HHHTTTSCEEEEEEC-----SSC---TTHHHHHHHHEEEEEEEEECC
T ss_pred HHhhCCCCceEEeec-----CCc---hhHHHHHHHHhcCCCEEEEEe
Confidence 1123469998853 221 245677888999999998743
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.80 E-value=4.7e-05 Score=57.37 Aligned_cols=101 Identities=20% Similarity=0.236 Sum_probs=71.5
Q ss_pred HHHHcCCCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------
Q 024096 26 LIEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------ 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------ 97 (272)
.++...+++|++||=+|||. |..+..+++..++ +|+++|.++.-.+.+++. |. .+++.-.-.+..
T Consensus 19 a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga---~~~i~~~~~~~~~~v~~~ 91 (174)
T d1jqba2 19 GAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GA---TDILNYKNGHIEDQVMKL 91 (174)
T ss_dssp HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TC---SEEECGGGSCHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Cc---cccccccchhHHHHHHHH
Confidence 45777899999999999996 7888888888665 799999999988888764 42 233322211111
Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
....+|+|+-. .+. ...+++..+.++|+|++++.-.
T Consensus 92 t~g~G~D~vid~-----~g~---~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 92 TNGKGVDRVIMA-----GGG---SETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp TTTSCEEEEEEC-----SSC---TTHHHHHHHHEEEEEEEEECCC
T ss_pred hhccCcceEEEc-----cCC---HHHHHHHHHHHhcCCEEEEEee
Confidence 23469998754 221 2456777888999999998433
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=0.00011 Score=55.05 Aligned_cols=100 Identities=26% Similarity=0.260 Sum_probs=70.6
Q ss_pred HHHHHHHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---
Q 024096 23 VSVLIEKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--- 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--- 97 (272)
+..+.+..++++|++||-.|+ |.|..+..+++..++++++++.+++..+.+++ .|.. +++.-.-.++.
T Consensus 17 ~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~---~vi~~~~~~~~~~i 89 (174)
T d1yb5a2 17 YRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH---EVFNHREVNYIDKI 89 (174)
T ss_dssp HHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEEETTSTTHHHHH
T ss_pred HHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCcc---cccccccccHHHHh
Confidence 344556677899999999996 47788888898889999999988877776654 3542 33322111111
Q ss_pred ----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 98 ----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 98 ----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
....+|+|+.. .+ ...++...+.|+|+|+++.
T Consensus 90 ~~~t~~~g~d~v~d~-----~g----~~~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 90 KKYVGEKGIDIIIEM-----LA----NVNLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp HHHHCTTCEEEEEES-----CH----HHHHHHHHHHEEEEEEEEE
T ss_pred hhhhccCCceEEeec-----cc----HHHHHHHHhccCCCCEEEE
Confidence 35679999864 22 2457777889999999987
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.77 E-value=0.00013 Score=54.84 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCCc-hHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc
Q 024096 16 EVGQMRKVSVLIEKARVSKGQEVLDIGCGW-GTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93 (272)
Q Consensus 16 ~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~ 93 (272)
..+-.-.+..+++...+++|++||=+|||. |..+..+++.. ...++++|.++...+.+++. |. .+++..+-
T Consensus 10 ~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga---~~~i~~~~ 82 (174)
T d1f8fa2 10 GCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA---THVINSKT 82 (174)
T ss_dssp GTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC---SEEEETTT
T ss_pred hhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CC---eEEEeCCC
Confidence 334444456677888899999999999984 44566677664 45788999999988888765 43 24443332
Q ss_pred CCCC------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 94 RQLP------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 94 ~~~~------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+.. .++.+|+|+-. .+. ...++.+.+.++|+|++++.
T Consensus 83 ~~~~~~i~~~t~gg~D~vid~-----~G~---~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 83 QDPVAAIKEITDGGVNFALES-----TGS---PEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp SCHHHHHHHHTTSCEEEEEEC-----SCC---HHHHHHHHHTEEEEEEEEEC
T ss_pred cCHHHHHHHHcCCCCcEEEEc-----CCc---HHHHHHHHhcccCceEEEEE
Confidence 2211 24579988853 322 46778888999999999874
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=0.00015 Score=54.22 Aligned_cols=100 Identities=22% Similarity=0.203 Sum_probs=70.1
Q ss_pred HHHHHcCCCCCCEEEEECCCch-HHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----
Q 024096 25 VLIEKARVSKGQEVLDIGCGWG-TLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----- 97 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G-~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----- 97 (272)
+.+++.+++++++||=+|+|.. ..+..+++..++ +|+++|.++..++.+++. |.. .++..+-.+..
T Consensus 17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~~~~~~~~~~~~ 89 (171)
T d1pl8a2 17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD---LVLQISKESPQEIARK 89 (171)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEECSSCCHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc---cccccccccccccccc
Confidence 4567778999999999999854 455666666666 899999999999888764 431 23332222211
Q ss_pred ----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 ----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+-. .+. ...++...+.+++||++++.
T Consensus 90 ~~~~~g~g~Dvvid~-----~G~---~~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 90 VEGQLGCKPEVTIEC-----TGA---EASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp HHHHHTSCCSEEEEC-----SCC---HHHHHHHHHHSCTTCEEEEC
T ss_pred ccccCCCCceEEEec-----cCC---chhHHHHHHHhcCCCEEEEE
Confidence 13568988863 322 45788888999999999884
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.72 E-value=8.2e-05 Score=57.09 Aligned_cols=109 Identities=17% Similarity=0.072 Sum_probs=72.3
Q ss_pred HHHHcCCCCCCEEEEECCCc-hHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------
Q 024096 26 LIEKARVSKGQEVLDIGCGW-GTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------ 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------ 97 (272)
.++..++++|++||-+|||. |..+..+++. ...+|+++|.++..++.+++. |. .+++...-.+..
T Consensus 17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga---~~~~~~~~~~~~~~i~~~ 89 (195)
T d1kola2 17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF---EIADLSLDTPLHEQIAAL 89 (195)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC---EEEETTSSSCHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cc---cEEEeCCCcCHHHHHHHH
Confidence 35677899999999999997 5566777766 445999999999999888765 32 222221111110
Q ss_pred -CCCCccEEEEechhhc-------cChhhHHHHHHHHHhcCccCcEEEEEee
Q 024096 98 -KANKYDRIISCGMIEH-------VGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272)
Q Consensus 98 -~~~~fD~V~~~~~~~~-------~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272)
....+|+++-.-.... +........++.+.+.++|+|++++.-.
T Consensus 90 t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 90 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred hCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 2356899885432110 0001124689999999999999998543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.68 E-value=9.7e-05 Score=54.92 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=66.5
Q ss_pred HHHHHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----C
Q 024096 25 VLIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----K 98 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~ 98 (272)
+.+++..+++|++||=+|+| .|..+..+++..+++|+++|.++...+.+++. |. ..++..+-.+.. .
T Consensus 18 ~al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~----Ga---~~~i~~~~~~~~~~~~~~ 90 (166)
T d1llua2 18 KGLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL----GA---SLTVNARQEDPVEAIQRD 90 (166)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC---SEEEETTTSCHHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc----Cc---cccccccchhHHHHHHHh
Confidence 34566788999999999998 45666777777789999999999988887754 43 233433222211 1
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
...+|.++.. ... ...++...+.|+|+|++++.
T Consensus 91 ~~g~~~~i~~----~~~----~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 91 IGGAHGVLVT----AVS----NSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp HSSEEEEEEC----CSC----HHHHHHHHTTEEEEEEEEEC
T ss_pred hcCCcccccc----ccc----chHHHHHHHHhcCCcEEEEE
Confidence 1233443332 111 34677788999999999873
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.60 E-value=0.0003 Score=52.73 Aligned_cols=103 Identities=20% Similarity=0.231 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272)
.+..+++...+++|++||=+|||. |..+..+++..++ +|+.+|.++...+.+++. |. ..++...-.+..
T Consensus 16 ~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga---~~~i~~~~~~~~~~ 88 (174)
T d1e3ia2 16 GYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GA---TDCLNPRELDKPVQ 88 (174)
T ss_dssp HHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---SEEECGGGCSSCHH
T ss_pred HHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CC---CcccCCccchhhhh
Confidence 344566777899999999999996 7788888888665 899999999888777765 43 233332211111
Q ss_pred ------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEE
Q 024096 98 ------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQ 139 (272)
Q Consensus 98 ------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 139 (272)
....+|+|+-. .+. +..+++..+.+++| |++++.
T Consensus 89 ~~~~~~~~~G~d~vie~-----~G~---~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 89 DVITELTAGGVDYSLDC-----AGT---AQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp HHHHHHHTSCBSEEEES-----SCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred hhHhhhhcCCCcEEEEe-----ccc---chHHHHHHHHhhcCCeEEEec
Confidence 23578998753 332 46788899999996 999874
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.53 E-value=0.00013 Score=60.44 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCC------CCCEEEEECCCchHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc
Q 024096 21 RKVSVLIEKARVS------KGQEVLDIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93 (272)
Q Consensus 21 ~~~~~l~~~l~~~------~~~~vLDiG~G~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~ 93 (272)
+.++.+++.+++. .+.+|||||.|.|.++..|.+.. ..+++++|+++...+..++... .+++.++++|+
T Consensus 24 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~ 99 (322)
T d1i4wa_ 24 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDP 99 (322)
T ss_dssp HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCT
T ss_pred HHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCch
Confidence 3456677766543 56789999999999999998863 3589999999999998887643 24789999998
Q ss_pred CCC
Q 024096 94 RQL 96 (272)
Q Consensus 94 ~~~ 96 (272)
...
T Consensus 100 l~~ 102 (322)
T d1i4wa_ 100 YDW 102 (322)
T ss_dssp TCH
T ss_pred hhc
Confidence 643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=0.00022 Score=53.03 Aligned_cols=100 Identities=18% Similarity=0.219 Sum_probs=69.8
Q ss_pred HHHHHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCC
Q 024096 25 VLIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANK 101 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~ 101 (272)
..+++.++++|++||=+|+| .|.++.++++..+++++++|.+++..+.+++. |. ..++...-.... ....
T Consensus 21 ~al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l----Ga---d~~i~~~~~~~~~~~~~~ 93 (168)
T d1uufa2 21 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GA---DEVVNSRNADEMAAHLKS 93 (168)
T ss_dssp HHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TC---SEEEETTCHHHHHTTTTC
T ss_pred HHHHHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc----CC---cEEEECchhhHHHHhcCC
Confidence 34567889999999999998 56788888887899999999998877777654 43 233332211111 3357
Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+|.++-.-.. ...++...+.++++|++++.
T Consensus 94 ~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 94 FDFILNTVAA--------PHNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp EEEEEECCSS--------CCCHHHHHTTEEEEEEEEEC
T ss_pred Cceeeeeeec--------chhHHHHHHHHhcCCEEEEe
Confidence 9988864221 13456677899999999974
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.33 E-value=0.00049 Score=51.14 Aligned_cols=99 Identities=23% Similarity=0.374 Sum_probs=69.6
Q ss_pred HHHHcCCCCCCEEEEECC-C-chHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----
Q 024096 26 LIEKARVSKGQEVLDIGC-G-WGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----- 97 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~-G-~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----- 97 (272)
.+++.+++++++||=+|+ | .|.++..+++. ...+|+++|.++...+.+++. |.. .++..+-.+..
T Consensus 19 al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~ 91 (170)
T d1jvba2 19 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRR 91 (170)
T ss_dssp HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred HHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc---eeeccCCcCHHHHHHH
Confidence 457788999999999996 4 55666777776 446999999999988888765 431 33333322221
Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+-. .+. ...++...+.++|+|++++.
T Consensus 92 ~~~~~~~d~vid~-----~g~---~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 92 ITESKGVDAVIDL-----NNS---EKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp HTTTSCEEEEEES-----CCC---HHHHTTGGGGEEEEEEEEEC
T ss_pred Hhhcccchhhhcc-----ccc---chHHHhhhhhcccCCEEEEe
Confidence 24569988864 221 45677788999999999874
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=97.20 E-value=0.00067 Score=53.60 Aligned_cols=114 Identities=12% Similarity=0.044 Sum_probs=82.6
Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHc-----------------------------------------cCCEEEEEc
Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-----------------------------------------TGCKYTGIT 64 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-----------------------------------------~~~~v~gvd 64 (272)
++.......+..++|--||+|.+.+..+.. ...+++|.|
T Consensus 42 al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D 121 (249)
T d1o9ga_ 42 ALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKP 121 (249)
T ss_dssp HHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCH
T ss_pred HhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccc
Confidence 333344456678999999999998876531 013567899
Q ss_pred CCHHHHHHH---HHHHHHcCCCCCeEEEEcccCCCC------CCCCccEEEEechhhcc-------ChhhHHHHHHHHHh
Q 024096 65 LSEEQLKYA---EIKVREAGLQDHIRFYLCDYRQLP------KANKYDRIISCGMIEHV-------GHDYMEEFFGCCES 128 (272)
Q Consensus 65 ~s~~~~~~a---~~~~~~~g~~~~i~~~~~d~~~~~------~~~~fD~V~~~~~~~~~-------~~~~~~~~l~~~~~ 128 (272)
+++.+++.| +++++..|+.+.+++.+.|+.+.. .+...++|+++...-.- +.+...++...+.+
T Consensus 122 ~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~ 201 (249)
T d1o9ga_ 122 SYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLAS 201 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHc
Confidence 999888888 468888999889999999986644 34668999999754332 22456778888888
Q ss_pred cCccCcEEEEE
Q 024096 129 LLATHGLLVLQ 139 (272)
Q Consensus 129 ~LkpgG~l~i~ 139 (272)
.+.....++++
T Consensus 202 ~~p~~s~~~it 212 (249)
T d1o9ga_ 202 ALPAHAVIAVT 212 (249)
T ss_dssp HSCTTCEEEEE
T ss_pred cCCCCcEEEEe
Confidence 88766666664
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.20 E-value=0.00078 Score=49.74 Aligned_cols=99 Identities=18% Similarity=0.199 Sum_probs=64.4
Q ss_pred HHHHcCCCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CC
Q 024096 26 LIEKARVSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KA 99 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~ 99 (272)
.+....++++++||=.|+|. |..+..+++..+++|++++.++...+.+++. |.. .++...-.+.. ..
T Consensus 19 al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~----Ga~---~~~~~~~~~~~~~~~~~~ 91 (168)
T d1rjwa2 19 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----GAD---LVVNPLKEDAAKFMKEKV 91 (168)
T ss_dssp HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TCS---EEECTTTSCHHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc----Ccc---eecccccchhhhhccccc
Confidence 45566889999999999985 4455666666788999999999988877653 431 22211111111 11
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
..+|.++.. ... ...++...+.|+|+|++++.
T Consensus 92 ~~~~~~v~~----~~~----~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 92 GGVHAAVVT----AVS----KPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp SSEEEEEES----SCC----HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCceEEee----cCC----HHHHHHHHHHhccCCceEec
Confidence 334444432 121 35677888899999999984
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.18 E-value=0.0019 Score=48.34 Aligned_cols=100 Identities=25% Similarity=0.357 Sum_probs=71.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCC--chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---
Q 024096 23 VSVLIEKARVSKGQEVLDIGCG--WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--- 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--- 97 (272)
+..+.+..++++|++||=.|++ .|..+..+++..+++|+++.-+++..+.+++. |. -+++.-+-.+..
T Consensus 18 ~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga---~~vi~~~~~~~~~~~ 90 (182)
T d1v3va2 18 YFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GF---DAAFNYKTVNSLEEA 90 (182)
T ss_dssp HHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC---SEEEETTSCSCHHHH
T ss_pred HHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hh---hhhcccccccHHHHH
Confidence 3455667788999999988875 46677888888899999999998877666654 43 233332222221
Q ss_pred ----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 98 ----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 98 ----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
....+|+|+- .++ .+.++...+.|+|+|++++
T Consensus 91 ~~~~~~~Gvd~v~D-----~vG----~~~~~~~~~~l~~~G~~v~ 126 (182)
T d1v3va2 91 LKKASPDGYDCYFD-----NVG----GEFLNTVLSQMKDFGKIAI 126 (182)
T ss_dssp HHHHCTTCEEEEEE-----SSC----HHHHHHHGGGEEEEEEEEE
T ss_pred HHHhhcCCCceeEE-----ecC----chhhhhhhhhccCCCeEEe
Confidence 3467999885 343 3467788999999999987
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.18 E-value=0.00052 Score=51.52 Aligned_cols=100 Identities=20% Similarity=0.177 Sum_probs=68.8
Q ss_pred HHHHHHHcCCCCCCEEEEEC--CCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---
Q 024096 23 VSVLIEKARVSKGQEVLDIG--CGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--- 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG--~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--- 97 (272)
+..+.+...+++|++||=.| .|.|..+..+++..++++++++-+++..+.+++ .|.. .++...-.++.
T Consensus 14 ~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v 86 (183)
T d1pqwa_ 14 WHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE---YVGDSRSVDFADEI 86 (183)
T ss_dssp HHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS---EEEETTCSTHHHHH
T ss_pred HHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----cccc---ccccCCccCHHHHH
Confidence 34455666789999999977 347788888998888999999888877776654 3532 33322222211
Q ss_pred ----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 98 ----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 98 ----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
....+|+|+..- + ...++.+.+.|+++|+++.
T Consensus 87 ~~~t~~~g~d~v~d~~-----g----~~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 87 LELTDGYGVDVVLNSL-----A----GEAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp HHHTTTCCEEEEEECC-----C----THHHHHHHHTEEEEEEEEE
T ss_pred HHHhCCCCEEEEEecc-----c----chHHHHHHHHhcCCCEEEE
Confidence 246799999743 2 2355667789999999986
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=0.0017 Score=48.32 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=68.4
Q ss_pred HHHHHcCCCCCCEEEEECCC--chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----
Q 024096 25 VLIEKARVSKGQEVLDIGCG--WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----- 97 (272)
Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----- 97 (272)
.+.+..++++|++||=.|+| .|..+..+++..+++|++++.+++-.+.+++. |.. +++...-.++.
T Consensus 19 al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l----Ga~---~vi~~~~~d~~~~v~~ 91 (179)
T d1qora2 19 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW---QVINYREEDLVERLKE 91 (179)
T ss_dssp HHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc----CCe---EEEECCCCCHHHHHHH
Confidence 34455678999999999655 56788888888899999999999988888754 432 33322222211
Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
....+|+|+-.- +. +.+......++++|++++
T Consensus 92 ~t~g~g~d~v~d~~-----g~----~~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 92 ITGGKKVRVVYDSV-----GR----DTWERSLDCLQRRGLMVS 125 (179)
T ss_dssp HTTTCCEEEEEECS-----CG----GGHHHHHHTEEEEEEEEE
T ss_pred HhCCCCeEEEEeCc-----cH----HHHHHHHHHHhcCCeeee
Confidence 246789887643 21 245667889999999876
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.09 E-value=0.0012 Score=49.06 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=67.7
Q ss_pred HHHHHHHc-CCCCCCEEEEECCCch-HHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 024096 23 VSVLIEKA-RVSKGQEVLDIGCGWG-TLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272)
Q Consensus 23 ~~~l~~~l-~~~~~~~vLDiG~G~G-~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272)
+..+.+.. .++++++||-+|+|.. ..+..+++. ...+++++|.++...+.+++. |. .+++..+-....
T Consensus 20 ~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga---~~~i~~~~~~~~~~ 92 (172)
T d1h2ba2 20 YRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA---DHVVDARRDPVKQV 92 (172)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC---SEEEETTSCHHHHH
T ss_pred HHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc---ceeecCcccHHHHH
Confidence 34444443 3689999999999854 455677766 446899999999888777754 32 244433321111
Q ss_pred ----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 ----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+-. .+. ...++...+.|+++|++++.
T Consensus 93 ~~~~~~~g~d~vid~-----~g~---~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 93 MELTRGRGVNVAMDF-----VGS---QATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp HHHTTTCCEEEEEES-----SCC---HHHHHHGGGGEEEEEEEEEC
T ss_pred HHhhCCCCceEEEEe-----cCc---chHHHHHHHHHhCCCEEEEE
Confidence 23568988853 322 35678889999999999974
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.02 E-value=0.0052 Score=45.60 Aligned_cols=109 Identities=18% Similarity=0.167 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchH-HHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC
Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGT-LAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272)
Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~-~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272)
+-.-.+..+++..++++|++||=+|||..+ .+..+++..+ .+|+++|.+++-++.+++. |. ..++...-.+
T Consensus 11 a~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga---~~~i~~~~~d 83 (174)
T d1p0fa2 11 GFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GA---TECLNPKDYD 83 (174)
T ss_dssp HHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TC---SEEECGGGCS
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CC---cEEEcCCCch
Confidence 333445566777789999999999999554 5555666645 5899999999988888764 43 2444322222
Q ss_pred CC--------CCCCccEEEEechhhccChhhHHHHHHHHHhcCc-cCcEEEEEee
Q 024096 96 LP--------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLA-THGLLVLQFI 141 (272)
Q Consensus 96 ~~--------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~ 141 (272)
.. ....+|.|+-. .+. ...+.+....++ ++|.+++.-.
T Consensus 84 ~~~~~~~~~~~~~G~d~vid~-----~g~---~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 84 KPIYEVICEKTNGGVDYAVEC-----AGR---IETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp SCHHHHHHHHTTSCBSEEEEC-----SCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred hHHHHHHHHhcCCCCcEEEEc-----CCC---chHHHHHHHHHHHhcCceEEEEE
Confidence 11 23578988853 221 345555555554 5689887443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.00 E-value=0.00026 Score=53.19 Aligned_cols=102 Identities=17% Similarity=0.221 Sum_probs=67.7
Q ss_pred HHHHHHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C--C
Q 024096 24 SVLIEKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P--K 98 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~--~ 98 (272)
..+.+.....+|++||=-|. |.|..+.++++..+++|+++.-+++-.+.+++. |...-+. +..+..+. . .
T Consensus 21 ~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l----Ga~~vi~-~~~~~~~~~~~~~ 95 (176)
T d1xa0a2 21 HRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL----GAKEVLA-REDVMAERIRPLD 95 (176)
T ss_dssp HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT----TCSEEEE-CC---------CC
T ss_pred HHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc----ccceeee-cchhHHHHHHHhh
Confidence 33555566778999999985 466788999988899999999888877777654 4321111 11111111 1 3
Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.+.+|+|+-. ++ ...+.+..+.|+|+|+++..
T Consensus 96 ~~gvD~vid~-----vg----g~~~~~~l~~l~~~Griv~~ 127 (176)
T d1xa0a2 96 KQRWAAAVDP-----VG----GRTLATVLSRMRYGGAVAVS 127 (176)
T ss_dssp SCCEEEEEEC-----ST----TTTHHHHHHTEEEEEEEEEC
T ss_pred ccCcCEEEEc-----CC----chhHHHHHHHhCCCceEEEe
Confidence 4689988753 33 23567788899999999874
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.95 E-value=0.0058 Score=45.14 Aligned_cols=103 Identities=15% Similarity=0.177 Sum_probs=69.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCC-chHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272)
.+..+.+..++++|++||=.||| .|.++..+++..+ ..|+++|.++...+.+++. |. .+++..+-....
T Consensus 16 ay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga---~~~i~~~~~~~~~~ 88 (176)
T d2fzwa2 16 GYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GA---TECINPQDFSKPIQ 88 (176)
T ss_dssp HHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TC---SEEECGGGCSSCHH
T ss_pred HHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CC---cEEEeCCchhhHHH
Confidence 34456677789999999999987 4456667777644 6899999999888888765 43 233322211111
Q ss_pred ------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 98 ------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 98 ------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
....+|+|+-. .+. ...++.+...+++||.+++.
T Consensus 89 ~~~~~~~~~g~D~vid~-----~G~---~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 89 EVLIEMTDGGVDYSFEC-----IGN---VKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp HHHHHHTTSCBSEEEEC-----SCC---HHHHHHHHHTBCTTTCEEEE
T ss_pred HHHHHHcCCCCcEeeec-----CCC---HHHHHHHHHhhcCCceeEEE
Confidence 23579999864 322 36777888899999887653
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.92 E-value=0.0013 Score=51.78 Aligned_cols=57 Identities=25% Similarity=0.294 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH
Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVR 78 (272)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~ 78 (272)
...++.+++... .+|+.|||.-||+|..+....+ .+.+.+|+|+++..++.|+++++
T Consensus 199 ~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~-~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 199 RDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKK-LGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHc
Confidence 345677777765 6889999999999999987666 48999999999999999999875
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.88 E-value=0.0064 Score=45.21 Aligned_cols=103 Identities=19% Similarity=0.157 Sum_probs=66.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCch-HHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-ccCCCC-
Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWG-TLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-DYRQLP- 97 (272)
Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G-~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~~~- 97 (272)
.+..+.+..++++|++||=+|||.. ..+..+++..+ .+|+++|.+++-++.|++. |- ..++.- |.....
T Consensus 17 ~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~----GA---~~~in~~~~~~~~~ 89 (176)
T d1d1ta2 17 GYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV----GA---TECISPKDSTKPIS 89 (176)
T ss_dssp HHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH----TC---SEEECGGGCSSCHH
T ss_pred HHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc----CC---cEEECccccchHHH
Confidence 3445667778899999999999954 45566666655 6999999999999999877 42 233321 111110
Q ss_pred ------CCCCccEEEEechhhccChhhHHHHHHH-HHhcCccCcEEEEE
Q 024096 98 ------KANKYDRIISCGMIEHVGHDYMEEFFGC-CESLLATHGLLVLQ 139 (272)
Q Consensus 98 ------~~~~fD~V~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~i~ 139 (272)
....+|.|+-.- +. ...+.+ +..+++++|++++.
T Consensus 90 ~~~~~~~g~G~d~vi~~~-----g~---~~~~~~a~~~~~~~~G~~v~v 130 (176)
T d1d1ta2 90 EVLSEMTGNNVGYTFEVI-----GH---LETMIDALASCHMNYGTSVVV 130 (176)
T ss_dssp HHHHHHHTSCCCEEEECS-----CC---HHHHHHHHTTSCTTTCEEEEC
T ss_pred HHHHHhccccceEEEEeC-----Cc---hHHHHHHHHHhhcCCeEEEEE
Confidence 235789887642 11 233333 44455666898874
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.78 E-value=0.00036 Score=52.09 Aligned_cols=94 Identities=23% Similarity=0.341 Sum_probs=65.9
Q ss_pred HHHHcCCCCCCEEEEECC-C-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CC
Q 024096 26 LIEKARVSKGQEVLDIGC-G-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KA 99 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~-G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~ 99 (272)
.++..++++|++||=.|. | .|..+..+++..|++|++++.+++..+.+++ .|.. .++ |..+.. ..
T Consensus 19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~----lGa~---~~i--~~~~~~~~~~~~ 89 (171)
T d1iz0a2 19 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE---EAA--TYAEVPERAKAW 89 (171)
T ss_dssp HHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS---EEE--EGGGHHHHHHHT
T ss_pred HHHHhCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc----cccc---eee--ehhhhhhhhhcc
Confidence 456678899999999884 4 5678888888889999999998877777664 3542 222 222221 34
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
..+|+|+-. .+ + .++...+.|+|+|+++.
T Consensus 90 ~g~D~v~d~-----~G-~----~~~~~~~~l~~~G~~v~ 118 (171)
T d1iz0a2 90 GGLDLVLEV-----RG-K----EVEESLGLLAHGGRLVY 118 (171)
T ss_dssp TSEEEEEEC-----SC-T----THHHHHTTEEEEEEEEE
T ss_pred ccccccccc-----cc-h----hHHHHHHHHhcCCcEEE
Confidence 679998853 22 1 24566789999999986
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.68 E-value=0.019 Score=46.26 Aligned_cols=119 Identities=15% Similarity=0.143 Sum_probs=84.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--CCCeEEEEcccCCCC---
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL--QDHIRFYLCDYRQLP--- 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~~~--- 97 (272)
++..+...-......|+.+|||.=.-...+....+.+++=+|. |..++.-++.+.+.+. ..+.+.+..|+.+.-
T Consensus 78 ~D~~~~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~ 156 (297)
T d2uyoa1 78 FDTYFNNAVIDGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPA 156 (297)
T ss_dssp HHHHHHHHHHTTCCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHHHHhhCCCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHH
Confidence 3444433222334577789999877666553225678888884 8888888888887764 345678888876521
Q ss_pred -C-----CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec
Q 024096 98 -K-----ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272)
Q Consensus 98 -~-----~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272)
. .+.--++++.+++.+++.++...+++.+.+...||+.+++....
T Consensus 157 L~~~g~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~ 207 (297)
T d2uyoa1 157 LRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 207 (297)
T ss_dssp HHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred HHhcCCCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 1 23445777788899999999999999999999999999885443
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.63 E-value=0.00064 Score=50.17 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=68.5
Q ss_pred CCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh
Q 024096 34 KGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272)
Q Consensus 34 ~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272)
++.+|+=||+|. |..+...+...+++|+.+|.+++.++..+.... .++.....+-..+. .-...|+|+..-.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~l~~~~~~aDivI~aali 105 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG-----SRVELLYSNSAEIETAVAEADLLIGAVLV 105 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhhHHHhhccCcEEEEeeec
Confidence 568999999995 556666666689999999999998888776653 24566555544443 22568999987544
Q ss_pred hccChhhHHHHHHHHHhcCccCcEEE
Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
.-- +.+.-+-+++.+.+|||..++
T Consensus 106 pG~--~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 106 PGR--RAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp TTS--SCCCCBCHHHHTTSCTTCEEE
T ss_pred CCc--ccCeeecHHHHhhcCCCcEEE
Confidence 322 233445667888999999876
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.53 E-value=0.0032 Score=50.10 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272)
Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272)
....+..+++... .+|+.|||.-||+|..+....+. +.+.+|+|+++...+.|++++...
T Consensus 193 P~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~l-gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 193 PAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp CHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred chhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 3455677777764 68999999999999998877764 889999999999999999998764
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.44 E-value=0.0025 Score=51.72 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH
Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVRE 79 (272)
Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~ 79 (272)
..++++++... .+|+.|||.-||+|..+....+. +.+.+|+|++++.++.+++++.+
T Consensus 238 ~L~~rlI~~~s-~~gdiVlDpF~GSGTT~~AA~~l-gR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 238 KLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERE-SRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHHhhhhcc-cCCCEEEecCCCCcHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHHHh
Confidence 45667777654 68899999999999999887764 89999999999999999887643
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.30 E-value=0.025 Score=41.15 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=57.6
Q ss_pred CEEEEECCCc--hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhc
Q 024096 36 QEVLDIGCGW--GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH 113 (272)
Q Consensus 36 ~~vLDiG~G~--G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~ 113 (272)
++|.=||+|. +.++..+.+ .+.+|+++|.+++.++.+++. +. +.....+.+.+ ...|+|+..
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~-~g~~V~~~d~~~~~~~~a~~~----~~---~~~~~~~~~~~---~~~DiIila----- 64 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRR-RGHYLIGVSRQQSTCEKAVER----QL---VDEAGQDLSLL---QTAKIIFLC----- 64 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGG---TTCSEEEEC-----
T ss_pred CEEEEEeecHHHHHHHHHHHH-CCCEEEEEECCchHHHHHHHh----hc---cceeeeecccc---ccccccccc-----
Confidence 4678889983 335555655 488999999999887776653 32 21222222222 567999874
Q ss_pred cChhhHHHHHHHHHhcCccCcEEE
Q 024096 114 VGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
+|......+++++...++++-.++
T Consensus 65 vp~~~~~~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 65 TPIQLILPTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp SCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred CcHhhhhhhhhhhhhhccccccee
Confidence 444566889999999988887664
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.29 E-value=0.002 Score=47.69 Aligned_cols=99 Identities=18% Similarity=0.260 Sum_probs=66.3
Q ss_pred HHHHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc--CCCC--CC
Q 024096 26 LIEKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY--RQLP--KA 99 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~--~~~~--~~ 99 (272)
+.+....+++.+||=-|+ |.|..+.++++..|++|+++.-+++-.+.+++. |.. .+ +...|. .... ..
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l----Gad-~v-i~~~~~~~~~~~~~~~ 88 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GAS-EV-ISREDVYDGTLKALSK 88 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCS-EE-EEHHHHCSSCCCSSCC
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh----ccc-ce-EeccchhchhhhcccC
Confidence 444444556777887764 467888999998899999999988777777655 542 12 221221 1111 34
Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE
Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+.+|+|+- +++ ...+.+..+.|+|+|++++.
T Consensus 89 ~gvd~vid-----~vg----g~~~~~~~~~l~~~G~iv~~ 119 (167)
T d1tt7a2 89 QQWQGAVD-----PVG----GKQLASLLSKIQYGGSVAVS 119 (167)
T ss_dssp CCEEEEEE-----SCC----THHHHHHHTTEEEEEEEEEC
T ss_pred CCceEEEe-----cCc----HHHHHHHHHHhccCceEEEe
Confidence 67998874 343 34667788999999999873
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=96.23 E-value=0.0035 Score=47.20 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=65.4
Q ss_pred HHHHHHcCCCCCCEEEEE--CCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc---ccCCCC
Q 024096 24 SVLIEKARVSKGQEVLDI--GCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC---DYRQLP 97 (272)
Q Consensus 24 ~~l~~~l~~~~~~~vLDi--G~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~---d~~~~~ 97 (272)
..+.+...+++|.+||=+ |.| .|..+..+++..|++++++--++...+...+.+++.|.. .++.- |..+..
T Consensus 18 ~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad---~vi~~~~~~~~~~~ 94 (189)
T d1gu7a2 18 LMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFG 94 (189)
T ss_dssp HHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGH
T ss_pred HHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc---EEEeccccchhHHH
Confidence 344455678899888887 333 567888888888999998865555555555555555643 33332 222211
Q ss_pred ---------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 98 ---------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 98 ---------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
....+|+|+- .++. ..+....+.|+|+|+++.
T Consensus 95 ~~v~~~~~~~g~~vdvv~D-----~vg~----~~~~~~~~~l~~~G~~v~ 135 (189)
T d1gu7a2 95 PTIKEWIKQSGGEAKLALN-----CVGG----KSSTGIARKLNNNGLMLT 135 (189)
T ss_dssp HHHHHHHHHHTCCEEEEEE-----SSCH----HHHHHHHHTSCTTCEEEE
T ss_pred HHHHHHHhhccCCceEEEE-----CCCc----chhhhhhhhhcCCcEEEE
Confidence 1346888874 3432 345667789999999986
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.10 E-value=0.02 Score=41.87 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=57.8
Q ss_pred EEEEECCCc-h-HHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhc
Q 024096 37 EVLDIGCGW-G-TLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH 113 (272)
Q Consensus 37 ~vLDiG~G~-G-~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~ 113 (272)
+|+=||||. | .++..|.+. ...+|+++|.+++..+.+++. +. +.....+.... .....|+|+..
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~~~~~~-~~~~~dlIila----- 69 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKV-EDFSPDFVMLS----- 69 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGG-GGTCCSEEEEC-----
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc---chhhhhhhhhh-hcccccccccc-----
Confidence 588899995 3 345556555 456999999999999888765 22 22222222211 22457999875
Q ss_pred cChhhHHHHHHHHHhcCccCcEEE
Q 024096 114 VGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
.+.+....+++++...++++..+.
T Consensus 70 ~p~~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 70 SPVRTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp SCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred CCchhhhhhhhhhhcccccccccc
Confidence 444556788899999998886554
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.09 E-value=0.043 Score=40.22 Aligned_cols=101 Identities=16% Similarity=0.131 Sum_probs=65.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchH-HHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-cccCCCC--
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGT-LAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL-CDYRQLP-- 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~-~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~-~d~~~~~-- 97 (272)
+..+.+...+++|++||=+|+|.+. .+..+++.. ..+|+++|.++.-.+.+++. |. ..++. .+..+..
T Consensus 17 y~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga---~~~i~~~~~~~~~~~ 89 (176)
T d2jhfa2 17 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GA---TECVNPQDYKKPIQE 89 (176)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---SEEECGGGCSSCHHH
T ss_pred HHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CC---eeEEecCCchhHHHH
Confidence 4456677789999999999997554 455555554 46999999999988888765 42 23332 2222211
Q ss_pred -----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEE
Q 024096 98 -----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVL 138 (272)
Q Consensus 98 -----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i 138 (272)
..+.+|+|+-.... ...++.....++++ |.+++
T Consensus 90 ~~~~~~~~G~D~vid~~G~--------~~~~~~a~~~~~~~~g~~~~ 128 (176)
T d2jhfa2 90 VLTEMSNGGVDFSFEVIGR--------LDTMVTALSCCQEAYGVSVI 128 (176)
T ss_dssp HHHHHTTSCBSEEEECSCC--------HHHHHHHHHHBCTTTCEEEE
T ss_pred HHHHHhcCCCCEEEecCCc--------hhHHHHHHHHHhcCCcceEE
Confidence 34679998864322 34555666677776 55554
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=96.02 E-value=0.033 Score=40.83 Aligned_cols=101 Identities=19% Similarity=0.239 Sum_probs=63.6
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHH-HHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLA-IEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--- 97 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~-~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--- 97 (272)
+..+.+...++++++||=+|+|.+..+ ..+++. ...+|+++|.+++..+.+++. |. .+++..+-.+..
T Consensus 17 y~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~----GA---d~~in~~~~~~~~~~ 89 (175)
T d1cdoa2 17 FGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----GA---TDFVNPNDHSEPISQ 89 (175)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---CEEECGGGCSSCHHH
T ss_pred HHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc----CC---cEEEcCCCcchhHHH
Confidence 445567778999999999999986544 444444 556899999999888887764 43 344433222111
Q ss_pred -----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEE
Q 024096 98 -----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVL 138 (272)
Q Consensus 98 -----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i 138 (272)
....+|+|+-. .+. ...+......++++ |.+++
T Consensus 90 ~~~~~~~~G~d~vid~-----~G~---~~~~~~a~~~~~~g~~~~~~ 128 (175)
T d1cdoa2 90 VLSKMTNGGVDFSLEC-----VGN---VGVMRNALESCLKGWGVSVL 128 (175)
T ss_dssp HHHHHHTSCBSEEEEC-----SCC---HHHHHHHHHTBCTTTCEEEE
T ss_pred HHHhhccCCcceeeee-----cCC---HHHHHHHHHHhhCCCcceeE
Confidence 23568988753 322 34455566666665 44443
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=96.00 E-value=0.03 Score=46.52 Aligned_cols=86 Identities=10% Similarity=0.198 Sum_probs=56.2
Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--------cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC
Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--------TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR 94 (272)
Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--------~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~ 94 (272)
+..+.+.++..+...|+|+|+|.|.++..+.+. ...+++.+|+|+...+.-++++... .+++++ .++.
T Consensus 68 ~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~---~~i~w~-~~~~ 143 (365)
T d1zkda1 68 SASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI---RNIHWH-DSFE 143 (365)
T ss_dssp HHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC---SSEEEE-SSGG
T ss_pred HHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc---ccceec-cChh
Confidence 344445566556678999999999998877553 1357899999999887777665432 245443 3444
Q ss_pred CCCCCCCccEEEEechhhcc
Q 024096 95 QLPKANKYDRIISCGMIEHV 114 (272)
Q Consensus 95 ~~~~~~~fD~V~~~~~~~~~ 114 (272)
..+ ...-+|++++.+..+
T Consensus 144 ~~~--~~~g~iiaNE~fDAl 161 (365)
T d1zkda1 144 DVP--EGPAVILANEYFDVL 161 (365)
T ss_dssp GSC--CSSEEEEEESSGGGS
T ss_pred hcc--cCCeEEEecccCccc
Confidence 444 223567777766555
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.099 Score=40.87 Aligned_cols=77 Identities=21% Similarity=0.285 Sum_probs=59.8
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
+++.+|=.|++.|. ++..|++. |++|+.++.++..++.+.+.++..+.+.++.++.+|+.+.. .-
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~-G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQ-GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 46789999988774 44555554 89999999999999998888888776668899999997743 12
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
+..|+++.+...
T Consensus 88 g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 88 SGVDICINNAGL 99 (257)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCCEEEecccc
Confidence 578998877543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.50 E-value=0.14 Score=35.41 Aligned_cols=87 Identities=13% Similarity=0.151 Sum_probs=57.0
Q ss_pred CEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEE
Q 024096 36 QEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIIS 107 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~ 107 (272)
++|+=+|+| ..+..+++. .+.+|+.+|.+++.++.+++.. .+.++.+|..+.. .-+..|.+++
T Consensus 1 M~IvI~G~G--~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 1 MYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAGIEDADMYIA 71 (132)
T ss_dssp CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred CEEEEECCC--HHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhcChhhhhhhcc
Confidence 467777775 455444443 4789999999999888765531 4688999988755 3467898888
Q ss_pred echhhccChhhHHHHHHHHHhcCccCcEE
Q 024096 108 CGMIEHVGHDYMEEFFGCCESLLATHGLL 136 (272)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 136 (272)
.. ++++..-+.....+.+.+.-.+
T Consensus 72 ~t-----~~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 72 VT-----GKEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp CC-----SCHHHHHHHHHHHHHTTCCCEE
T ss_pred cC-----CcHHHHHHHHHHHHHcCCceEE
Confidence 42 2223334455556667777443
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.046 Score=40.36 Aligned_cols=91 Identities=16% Similarity=0.260 Sum_probs=61.1
Q ss_pred CCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEE
Q 024096 32 VSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRII 106 (272)
Q Consensus 32 ~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~ 106 (272)
..++.+||=.|. |.|..+.++++..|++|+++.-+++..+.+++. |. ..++.-+-.+.. ....+|.|+
T Consensus 29 ~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l----Ga---d~vi~~~~~~~~~~l~~~~~~~vv 101 (177)
T d1o89a2 29 RPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL----GA---SRVLPRDEFAESRPLEKQVWAGAI 101 (177)
T ss_dssp CGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TE---EEEEEGGGSSSCCSSCCCCEEEEE
T ss_pred CCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh----cc---ccccccccHHHHHHHHhhcCCeeE
Confidence 334457886653 367788899988999999999998888777654 32 233333322222 335678764
Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
..+. ...+.+..+.|+++|+++.
T Consensus 102 -----D~Vg----g~~~~~~l~~l~~~Griv~ 124 (177)
T d1o89a2 102 -----DTVG----DKVLAKVLAQMNYGGCVAA 124 (177)
T ss_dssp -----ESSC----HHHHHHHHHTEEEEEEEEE
T ss_pred -----EEcc----hHHHHHHHHHhccccceEe
Confidence 3443 2467788889999999987
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.33 E-value=0.083 Score=39.13 Aligned_cols=100 Identities=22% Similarity=0.276 Sum_probs=64.4
Q ss_pred HHHHHHcCCCCC--CEEEEEC--CCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-
Q 024096 24 SVLIEKARVSKG--QEVLDIG--CGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272)
Q Consensus 24 ~~l~~~l~~~~~--~~vLDiG--~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272)
..+.+..++++| .+||=.| .|.|..+.++++..++ .|+++..+++....... ..|. ..++...-.+..
T Consensus 18 ~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~---~~ga---d~vi~~~~~~~~~ 91 (187)
T d1vj1a2 18 IGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTS---ELGF---DAAVNYKTGNVAE 91 (187)
T ss_dssp HHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHH---HSCC---SEEEETTSSCHHH
T ss_pred HHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhh---cccc---eEEeeccchhHHH
Confidence 345566667766 7899877 4688999999998665 57777777655444332 2242 233333222221
Q ss_pred -----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 98 -----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 98 -----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.++.+|+|+- .++ ...++...+.|+|+|+++.
T Consensus 92 ~~~~~~~~GvDvv~D-----~vG----g~~~~~~~~~l~~~G~iv~ 128 (187)
T d1vj1a2 92 QLREACPGGVDVYFD-----NVG----GDISNTVISQMNENSHIIL 128 (187)
T ss_dssp HHHHHCTTCEEEEEE-----SSC----HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHhccCceEEEe-----cCC----chhHHHHhhhccccccEEE
Confidence 2457999974 343 2467788999999999986
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.24 E-value=0.0094 Score=44.34 Aligned_cols=102 Identities=13% Similarity=0.016 Sum_probs=59.7
Q ss_pred CCCEEEEECCCchH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcC-C----CCCeEEEEcccCCCC----------
Q 024096 34 KGQEVLDIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAG-L----QDHIRFYLCDYRQLP---------- 97 (272)
Q Consensus 34 ~~~~vLDiG~G~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g-~----~~~i~~~~~d~~~~~---------- 97 (272)
++.+||=||+|.-+ .+...|...|++|+.+|.++...+..+....+.- . ....+-..+...++.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~ 107 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA 107 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence 56799999999654 5566666689999999999988777765421110 0 000000000011110
Q ss_pred ---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEE
Q 024096 98 ---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272)
Q Consensus 98 ---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272)
.-...|+|+..-.+.-- +.+.-+-+++.+.||||..++
T Consensus 108 l~~~l~~aDlVI~talipG~--~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 108 VLKELVKTDIAITTALIPGK--PAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHTTCSEEEECCCCTTS--CCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHhhhhheeeeecCCc--ccceeehHHHHHhcCCCcEEE
Confidence 01368999987554432 222335567788899999876
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.99 E-value=0.48 Score=38.24 Aligned_cols=168 Identities=14% Similarity=0.197 Sum_probs=100.1
Q ss_pred HHHHHHH-cCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC-------------------
Q 024096 23 VSVLIEK-ARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAG------------------- 81 (272)
Q Consensus 23 ~~~l~~~-l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g------------------- 81 (272)
++.++++ +...+...|+-+|||.=.....+.+. ++.+++=+|. |+.++.=++.+++..
T Consensus 84 id~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~ 162 (328)
T d1rjda_ 84 IDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFL 162 (328)
T ss_dssp HHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEE
T ss_pred HHHHHHHHHHHCCCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhcccccccccccccc
Confidence 3444443 22345568999999988777777654 5555666665 555555444443310
Q ss_pred -CCCCeEEEEcccCCCC----------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC---CCCc
Q 024096 82 -LQDHIRFYLCDYRQLP----------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA---PDQC 147 (272)
Q Consensus 82 -~~~~i~~~~~d~~~~~----------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~ 147 (272)
..++.+.+.+|+.+.. ..+..-++++-.++.+++.+...++++.+.+.... +.+++-+... |++.
T Consensus 163 ~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~-~~~i~YE~i~~~~p~D~ 241 (328)
T d1rjda_ 163 IDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH-GLWISYDPIGGSQPNDR 241 (328)
T ss_dssp EECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS-EEEEEEEECCCCSTTCC
T ss_pred CCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC-ceEEEeccCCCCCCCCh
Confidence 1246788889987753 12345589999999999998889999999887754 5555556653 4444
Q ss_pred cccccCcchhh--hhcccCC-CCCCCHHHHHHHhhcCCCcEEEEEEecCccH
Q 024096 148 YDEYRLSPGFI--KEYIFPG-GCLPSLGRVTSAMTSSSGLCVEHLENIGIHY 196 (272)
Q Consensus 148 ~~~~~~~~~~~--~~~~~p~-~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~ 196 (272)
++... ...+. +.-..++ ..+++.+...... .|+.-....++..-|
T Consensus 242 FG~~M-~~nl~~~r~~~l~~~~~~~t~~~~~~r~---~~~~~~~~~dm~~~~ 289 (328)
T d1rjda_ 242 FGAIM-QSNLKESRNLEMPTLMTYNSKEKYASRW---SAAPNVIVNDMWEIF 289 (328)
T ss_dssp HHHHH-HHHHHHHHCCCCTTTTTTCSHHHHHGGG---TTSSEEEEEEHHHHH
T ss_pred HHHHH-HHHHHHhcCCCCCccccCCCHHHHHHHH---hcCCccchhhHHHHH
Confidence 43321 11111 1111122 3456676655433 477777777765433
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=94.53 E-value=0.091 Score=42.02 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=53.1
Q ss_pred CEEEEECCCchHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEechhh
Q 024096 36 QEVLDIGCGWGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGMIE 112 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~~~ 112 (272)
++|||+-||.|+++.-+-+. |.+ +.++|+++...+..+.+. .-.+..+|+.++. .-...|+++......
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~~~~~~N~-------~~~~~~~Di~~~~~~~~~~~dll~~g~PCq 72 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-------SAKLIKGDISKISSDEFPKCDGIIGGPPCQ 72 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHHHHHHHHC-------CSEEEESCTTTSCGGGSCCCSEEEECCCCT
T ss_pred CeEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-------CCCCccCChhhCCHhHcccccEEeeccccc
Confidence 47999999999998877765 555 459999998777766653 2356789999987 335789999876544
Q ss_pred cc
Q 024096 113 HV 114 (272)
Q Consensus 113 ~~ 114 (272)
.+
T Consensus 73 ~f 74 (324)
T d1dcta_ 73 SW 74 (324)
T ss_dssp TT
T ss_pred cc
Confidence 33
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=94.31 E-value=0.047 Score=37.87 Aligned_cols=83 Identities=13% Similarity=0.116 Sum_probs=58.0
Q ss_pred CCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEechhhccCh
Q 024096 43 CGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIISCGMIEHVGH 116 (272)
Q Consensus 43 ~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~~~~~~~~~~ 116 (272)
||.|..+..+++. .+..++.+|.++...+..+.. .+.++.+|..+.. .-++.+.+++.. ++
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~--------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----~~ 72 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS--------GANFVHGDPTRVSDLEKANVRGARAVIVNL-----ES 72 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT--------TCEEEESCTTSHHHHHHTTCTTCSEEEECC-----SS
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc--------CccccccccCCHHHHHHhhhhcCcEEEEec-----cc
Confidence 5677788888887 556788999999887765432 5789999987754 346788888742 22
Q ss_pred hhHHHHHHHHHhcCccCcEEEE
Q 024096 117 DYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 117 ~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+.....+-...+.+.|...++.
T Consensus 73 d~~n~~~~~~~r~~~~~~~iia 94 (129)
T d2fy8a1 73 DSETIHCILGIRKIDESVRIIA 94 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEE
T ss_pred hhhhHHHHHHHHHHCCCceEEE
Confidence 3334445556677888887776
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=94.12 E-value=0.084 Score=44.12 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=47.3
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-c--CCEEEEEcCCHHHHHHHHHHHHHcCCC---CCeEEEEc
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-T--GCKYTGITLSEEQLKYAEIKVREAGLQ---DHIRFYLC 91 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~--~~~v~gvd~s~~~~~~a~~~~~~~g~~---~~i~~~~~ 91 (272)
+.++..++|+|+-.|..+..+++. . ..+|+++|+++...+..+++++.+... .++.....
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~~ 275 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGC 275 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECS
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEEE
Confidence 567889999999999998877765 3 369999999999999999999877543 23555443
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=94.05 E-value=0.055 Score=43.69 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=53.3
Q ss_pred CCCEEEEECCCchHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEech
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGM 110 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~ 110 (272)
.+.+|||+-||.|+++.-+.+. |.+ +.++|+++..++..+.+... ..++|+.++. ....+|+++....
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a-G~~~v~a~e~d~~a~~~~~~N~~~--------~~~~Di~~~~~~~~~~~Dll~ggpP 80 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGE--------KPEGDITQVNEKTIPDHDILCAGFP 80 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSC--------CCBSCGGGSCGGGSCCCSEEEEECC
T ss_pred CCCeEEEECccccHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHCCC--------CCcCchhcCchhhcceeeeeecccc
Confidence 5789999999999999988775 555 56799999988888777521 1357888876 2357999998765
Q ss_pred hh
Q 024096 111 IE 112 (272)
Q Consensus 111 ~~ 112 (272)
..
T Consensus 81 Cq 82 (327)
T d2c7pa1 81 CQ 82 (327)
T ss_dssp CT
T ss_pred cc
Confidence 43
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=93.78 E-value=0.075 Score=36.87 Aligned_cols=87 Identities=13% Similarity=0.143 Sum_probs=52.6
Q ss_pred EEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEe
Q 024096 37 EVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIISC 108 (272)
Q Consensus 37 ~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~~ 108 (272)
+++=+|+| .++..+++. .+.+|+.+|.+++.++.++.. ...++.+|..+.. .-...|.|++.
T Consensus 2 ~~iIiG~G--~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~--------~~~~~~gd~~~~~~l~~a~i~~a~~vi~~ 71 (134)
T d2hmva1 2 QFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYASY--------ATHAVIANATEENELLSLGIRNFEYVIVA 71 (134)
T ss_dssp CEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT--------CSEEEECCTTCTTHHHHHTGGGCSEEEEC
T ss_pred EEEEECCC--HHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh--------CCcceeeecccchhhhccCCccccEEEEE
Confidence 34556665 444444443 588999999999888876532 3467889987765 23567877764
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
+++.+....+-...+.+.+...++.
T Consensus 72 -----~~~~~~~~~~~~~~~~~~~~~~iia 96 (134)
T d2hmva1 72 -----IGANIQASTLTTLLLKELDIPNIWV 96 (134)
T ss_dssp -----CCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred -----cCchHHhHHHHHHHHHHcCCCcEEe
Confidence 2222223333334444456667665
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=92.64 E-value=0.23 Score=35.18 Aligned_cols=91 Identities=18% Similarity=0.097 Sum_probs=56.6
Q ss_pred EEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEe
Q 024096 37 EVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIISC 108 (272)
Q Consensus 37 ~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~~ 108 (272)
+|+=+|+| ..+..+++. .+.+++.+|.+++......+.... .++.++.||..+.. .-+..|.|++.
T Consensus 5 HiII~G~g--~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~ 78 (153)
T d1id1a_ 5 HFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp CEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred EEEEECCC--HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence 56666665 444444443 478899999988654333333222 36899999987754 34678888875
Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
. +++.....+....+.+.|.-+++.
T Consensus 79 ~-----~~d~~n~~~~~~~r~~~~~~~iia 103 (153)
T d1id1a_ 79 S-----DNDADNAFVVLSAKDMSSDVKTVL 103 (153)
T ss_dssp S-----SCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred c-----ccHHHHHHHHHHHHHhCCCCceEE
Confidence 2 223333444455666778877776
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.18 E-value=0.077 Score=42.90 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=51.9
Q ss_pred CCEEEEECCCchHHHHHHHHc-cCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEEEe
Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ-TGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRIISC 108 (272)
Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~-~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V~~~ 108 (272)
..+|+|+-||.|+++.-+.+. ...+ +.++|+++..++..+.+. +...++++|+.++. +...+|+++..
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~------~~~~~~~~di~~~~~~~~~~~~~Dll~gg 75 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF------PHTQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC------TTSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC------CCCCcccCchhhCCHhHcCCCCccEEEee
Confidence 468999999999998877665 2224 679999998877776653 24567888988876 12368999987
Q ss_pred chhhcc
Q 024096 109 GMIEHV 114 (272)
Q Consensus 109 ~~~~~~ 114 (272)
.....+
T Consensus 76 pPCq~f 81 (343)
T d1g55a_ 76 PPCQPF 81 (343)
T ss_dssp CC----
T ss_pred cccccc
Confidence 765544
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.54 E-value=0.34 Score=37.45 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=57.2
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.|+.+|=-|++.|. .+..++++ |++|+.++.+++..+.+.+.+....-..++.++.+|+.+.. .-
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLK-GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 46788888887663 44555554 89999999999888877776654433357899999997753 12
Q ss_pred CCccEEEEechhhcc
Q 024096 100 NKYDRIISCGMIEHV 114 (272)
Q Consensus 100 ~~fD~V~~~~~~~~~ 114 (272)
++.|+++.+......
T Consensus 81 G~iDilVnnAg~~~~ 95 (254)
T d2gdza1 81 GRLDILVNNAGVNNE 95 (254)
T ss_dssp SCCCEEEECCCCCCS
T ss_pred CCcCeeccccccccc
Confidence 578998887655443
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.24 E-value=0.7 Score=35.94 Aligned_cols=104 Identities=16% Similarity=0.115 Sum_probs=70.1
Q ss_pred CCCEEEEE-CCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------C
Q 024096 34 KGQEVLDI-GCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------K 98 (272)
Q Consensus 34 ~~~~vLDi-G~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~ 98 (272)
+|++|.=| |++.|. ++..|++..+.+|+..+.+++..+.+.+.++..+ .++.++.+|+.+.. .
T Consensus 1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dvs~~~sv~~~~~~~~~~ 78 (275)
T d1wmaa1 1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE 78 (275)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEEecCCHHHHHHHHHHHHHh
Confidence 36677555 555443 3344554457899999999999988888887766 36899999997754 1
Q ss_pred CCCccEEEEechhhccC------hhhHH-----------HHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHVG------HDYME-----------EFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~------~~~~~-----------~~l~~~~~~LkpgG~l~i~ 139 (272)
-++.|+++.+-.+.+.. +++.. .+.+.+...|+++|+++..
T Consensus 79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni 136 (275)
T d1wmaa1 79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 136 (275)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 25899999886543221 11111 2456667788899998763
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=90.99 E-value=0.17 Score=31.69 Aligned_cols=51 Identities=18% Similarity=0.321 Sum_probs=39.4
Q ss_pred HHHHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHH
Q 024096 26 LIEKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIK 76 (272)
Q Consensus 26 l~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~ 76 (272)
+.+....+++.+||=.|. |.|..+.++++..+++|+++.-|++..+++++.
T Consensus 23 ~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~l 75 (77)
T d1o8ca2 23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL 75 (77)
T ss_dssp HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH
T ss_pred HHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHC
Confidence 334445678889998875 366788888888899999999999888887653
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.95 E-value=0.72 Score=35.38 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=58.9
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.|..+|=-|++.|. ++..+++. |++|+.+|.+++.++...+.+...+ .++.++.+|+.+.. .-
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~-G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKL-KSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 57788888988874 56666665 8999999999998888888887665 47899999998753 23
Q ss_pred CCccEEEEechhh
Q 024096 100 NKYDRIISCGMIE 112 (272)
Q Consensus 100 ~~fD~V~~~~~~~ 112 (272)
+..|+++.+..+.
T Consensus 83 g~idilinnag~~ 95 (244)
T d1yb1a_ 83 GDVSILVNNAGVV 95 (244)
T ss_dssp CCCSEEEECCCCC
T ss_pred CCCceeEeecccc
Confidence 5788888776543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.79 E-value=1.1 Score=34.12 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=51.2
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CCCCcc
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------KANKYD 103 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~~~~fD 103 (272)
.|+++|=.|++.|. .+..+++. |++|+.+|.+++.++...+.+ .++..++.|+.+.. .-++.|
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~-G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~iD 78 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHAT-GARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPVD 78 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCCce
Confidence 67899999988773 55566664 899999999987766554332 25788899987643 236899
Q ss_pred EEEEechh
Q 024096 104 RIISCGMI 111 (272)
Q Consensus 104 ~V~~~~~~ 111 (272)
+++.+..+
T Consensus 79 ilVnnAg~ 86 (244)
T d1pr9a_ 79 LLVNNAAV 86 (244)
T ss_dssp EEEECCCC
T ss_pred EEEecccc
Confidence 98876543
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=90.79 E-value=0.75 Score=35.53 Aligned_cols=76 Identities=20% Similarity=0.249 Sum_probs=57.6
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.|+++|=-|++.|. .+..+++. |++|..+|.+++.++...+.+...+...++.++.+|+.+.. .-
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAE-GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 46788888987774 55666665 89999999999988888777766555557889999987754 12
Q ss_pred CCccEEEEech
Q 024096 100 NKYDRIISCGM 110 (272)
Q Consensus 100 ~~fD~V~~~~~ 110 (272)
++.|+++.+-.
T Consensus 82 G~iDiLVnnAG 92 (258)
T d1iy8a_ 82 GRIDGFFNNAG 92 (258)
T ss_dssp SCCSEEEECCC
T ss_pred CCCCEEEECCc
Confidence 57899887643
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=90.46 E-value=0.73 Score=33.10 Aligned_cols=97 Identities=13% Similarity=0.080 Sum_probs=57.3
Q ss_pred CEEEEECCCchH--HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEE-Ecc-c-CCCC-CCCCccEEEEec
Q 024096 36 QEVLDIGCGWGT--LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFY-LCD-Y-RQLP-KANKYDRIISCG 109 (272)
Q Consensus 36 ~~vLDiG~G~G~--~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~-~~d-~-~~~~-~~~~fD~V~~~~ 109 (272)
++|-=||+|..+ ++..|++ .|.+|+.+|.++..++..++.-......+..... ... . .+.. .-...|+|+..
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~- 79 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLAL-KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV- 79 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC-
T ss_pred CEEEEECccHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE-
Confidence 578889999655 3444555 4889999999998877766542100000000001 000 0 0111 11568998874
Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEE
Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
++......+++++...|+++-.+++
T Consensus 80 ----v~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 80 ----VPAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp ----SCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred ----EchhHHHHHHHHhhhccCCCCEEEE
Confidence 2334557899999999999886654
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=90.28 E-value=0.73 Score=35.53 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=68.0
Q ss_pred CCCEEEEECCCch---HHHHHHHHccCCEEEE-EcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------C
Q 024096 34 KGQEVLDIGCGWG---TLAIEIVKQTGCKYTG-ITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------K 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~g-vd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~ 98 (272)
.|++||=.|++.| ..+..|++. |++|+. ...++...+.+.+.++..| .++.++.+|+.+.. .
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~-G~~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 5 AGKVALTTGAGRGIGRGIAIELGRR-GASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHHH
Confidence 5788997786655 355555654 888876 4667777888888888776 47899999997643 1
Q ss_pred CCCccEEEEechhhccC------hhhH-----------HHHHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEHVG------HDYM-----------EEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~~~------~~~~-----------~~~l~~~~~~LkpgG~l~i~ 139 (272)
-+..|+++.+..+.+.. .+++ -.+.+.+...|+.+|.+++.
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence 25789888876544332 1222 12455556667777776654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=90.09 E-value=0.93 Score=34.96 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=56.5
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------------C
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------------K 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------------~ 98 (272)
.|+++|=.|+..|. .+..+++. |++|+.++.++...+.+.+.++..+ .++.++.+|+.+.. .
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~-G~~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGL-GARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 57899999987663 45555664 8999999999998888888887776 46888999987643 1
Q ss_pred CCCccEEEEechh
Q 024096 99 ANKYDRIISCGMI 111 (272)
Q Consensus 99 ~~~fD~V~~~~~~ 111 (272)
....|+++.+..+
T Consensus 82 ~g~idilinnag~ 94 (258)
T d1ae1a_ 82 DGKLNILVNNAGV 94 (258)
T ss_dssp TSCCCEEEECCCC
T ss_pred CCCcEEEeccccc
Confidence 2567888876443
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=90.09 E-value=1.6 Score=33.76 Aligned_cols=103 Identities=19% Similarity=0.240 Sum_probs=68.7
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCC-HHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------C
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLS-EEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------K 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s-~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~ 98 (272)
.|+++|=.|++.|. ++..|+++ |++|+..+.+ ++..+...+.++..+ .++.++.+|+.+.. .
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~-Ga~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRR-GCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI 93 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHHHHH
Confidence 47788888887763 55566665 8999998876 566666666666665 37899999987743 1
Q ss_pred CCCccEEEEechhhc------cChhhHHH-----------HHHHHHhcCccCcEEEEE
Q 024096 99 ANKYDRIISCGMIEH------VGHDYMEE-----------FFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 99 ~~~fD~V~~~~~~~~------~~~~~~~~-----------~l~~~~~~LkpgG~l~i~ 139 (272)
.+..|+++.+..... .+.++... +.+.+...|+.+|.+++.
T Consensus 94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i 151 (272)
T d1g0oa_ 94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 151 (272)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence 257898887754332 22222222 455666777888877764
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.85 E-value=0.22 Score=38.81 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=38.0
Q ss_pred EEEEcccCCCC---CCCCccEEEEechhhcc--------C-hhhHHHHHHHHHhcCccCcEEEEE
Q 024096 87 RFYLCDYRQLP---KANKYDRIISCGMIEHV--------G-HDYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 87 ~~~~~d~~~~~---~~~~fD~V~~~~~~~~~--------~-~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
.++++|..+.- +++++|+|+.......- . .+.....++++.++|||+|.+++.
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~ 70 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 70 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence 56777865532 67899999998764210 0 023467889999999999999984
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=89.67 E-value=0.39 Score=35.35 Aligned_cols=83 Identities=10% Similarity=0.064 Sum_probs=56.2
Q ss_pred HHHHHHcC-CCCCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--
Q 024096 24 SVLIEKAR-VSKGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272)
Q Consensus 24 ~~l~~~l~-~~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272)
..+.+... .-++++||=.|++.|. ++..++++ |++|+.++.+++..+...+.+.... ++.+...|..+..
T Consensus 11 ~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~ 86 (191)
T d1luaa1 11 ALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASR 86 (191)
T ss_dssp HHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHH
T ss_pred HHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhh-ccchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHH
Confidence 44555544 3378899999976653 44555664 8999999999988888777776542 4455666665433
Q ss_pred --CCCCccEEEEech
Q 024096 98 --KANKYDRIISCGM 110 (272)
Q Consensus 98 --~~~~fD~V~~~~~ 110 (272)
.-+..|+++.+..
T Consensus 87 ~~~~~~iDilin~Ag 101 (191)
T d1luaa1 87 AEAVKGAHFVFTAGA 101 (191)
T ss_dssp HHHTTTCSEEEECCC
T ss_pred HHHhcCcCeeeecCc
Confidence 2357899887654
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=89.65 E-value=1.9 Score=32.97 Aligned_cols=69 Identities=22% Similarity=0.315 Sum_probs=51.3
Q ss_pred EEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CCCCcc
Q 024096 38 VLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KANKYD 103 (272)
Q Consensus 38 vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~~~fD 103 (272)
+|=-|++.|. .+..+++. |++|+.++.+++.++...+.++..+ .++.++.+|+.+.. .-++.|
T Consensus 4 alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKD-GFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred EEEcCCccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 4666776553 44555554 8999999999999888888887765 47889999997753 125799
Q ss_pred EEEEec
Q 024096 104 RIISCG 109 (272)
Q Consensus 104 ~V~~~~ 109 (272)
+++.+-
T Consensus 81 ilVnnA 86 (255)
T d1gega_ 81 VIVNNA 86 (255)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 988764
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=89.47 E-value=0.97 Score=34.86 Aligned_cols=73 Identities=27% Similarity=0.416 Sum_probs=55.9
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.|+++|=-|.+.|. .+..|++. |++|+.+|.+++.++.+.+.++..+ .++..+.+|+.+.. .-
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEE-GTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57789988877663 45566665 8999999999999988888887665 47889999987643 12
Q ss_pred CCccEEEEec
Q 024096 100 NKYDRIISCG 109 (272)
Q Consensus 100 ~~fD~V~~~~ 109 (272)
+..|+++.+.
T Consensus 81 g~iDilVnna 90 (260)
T d1zema1 81 GKIDFLFNNA 90 (260)
T ss_dssp SCCCEEEECC
T ss_pred CCCCeehhhh
Confidence 5789888764
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=88.89 E-value=1.2 Score=34.38 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=56.7
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------------C
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------------K 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------------~ 98 (272)
.|+++|=-|++.|. ++..|++. |++|+.+|.+++.++.+.+.+...+ .++.++.+|+.+.. .
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASL-GASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF 83 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 57889988987663 45556664 8999999999999988888887765 47888999987632 1
Q ss_pred CCCccEEEEechh
Q 024096 99 ANKYDRIISCGMI 111 (272)
Q Consensus 99 ~~~fD~V~~~~~~ 111 (272)
..+.|+++.+..+
T Consensus 84 ~~~idilvnnAG~ 96 (259)
T d2ae2a_ 84 HGKLNILVNNAGI 96 (259)
T ss_dssp TTCCCEEEECCCC
T ss_pred CCCceEEEECCce
Confidence 2478999887543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=88.50 E-value=0.57 Score=30.37 Aligned_cols=70 Identities=16% Similarity=0.324 Sum_probs=41.3
Q ss_pred CCCCEEEEECCC---chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEec
Q 024096 33 SKGQEVLDIGCG---WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCG 109 (272)
Q Consensus 33 ~~~~~vLDiG~G---~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~ 109 (272)
....+|.=+|.| .+.++..|.++ |.+|+|.|...... . +.+.+.| +.+..+...+.- ...|+|+...
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~-G~~VsGSD~~~~~~--~-~~L~~~G----i~v~~g~~~~~i--~~~d~vV~S~ 75 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNE-GYQISGSDIADGVV--T-QRLAQAG----AKIYIGHAEEHI--EGASVVVVSS 75 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHH-TCEEEEEESCCSHH--H-HHHHHTT----CEEEESCCGGGG--TTCSEEEECT
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhC-CCEEEEEeCCCChh--h-hHHHHCC----CeEEECCccccC--CCCCEEEECC
Confidence 345677777543 44566667775 89999999863211 1 2223334 455555543322 4579998886
Q ss_pred hhh
Q 024096 110 MIE 112 (272)
Q Consensus 110 ~~~ 112 (272)
.+.
T Consensus 76 AI~ 78 (96)
T d1p3da1 76 AIK 78 (96)
T ss_dssp TSC
T ss_pred CcC
Confidence 654
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.33 E-value=1.1 Score=34.83 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=57.5
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC-----------C
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYRQLP-----------K 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~-----------~ 98 (272)
.|+++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.+...+.+ .++.++.+|+.+.. .
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKE-GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 81 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 47788888887763 45556664 899999999999888888888777653 47899999987753 1
Q ss_pred CCCccEEEEech
Q 024096 99 ANKYDRIISCGM 110 (272)
Q Consensus 99 ~~~fD~V~~~~~ 110 (272)
-++.|+++.+..
T Consensus 82 ~G~iDilVnnAG 93 (274)
T d1xhla_ 82 FGKIDILVNNAG 93 (274)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCceEEEeecc
Confidence 247899988743
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=87.93 E-value=1.1 Score=34.49 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=55.2
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.|+++|=-|++.|. .+..+++ .|++|+.++.+++.++.+.+.++..+ .++.++.+|+.+.. .-
T Consensus 10 ~gK~alITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFAT-AGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHT-TTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57788877776653 3344555 48999999999998888888887765 47889999997743 12
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
++.|+++.+..+
T Consensus 87 g~iDilvnnAG~ 98 (255)
T d1fmca_ 87 GKVDILVNNAGG 98 (255)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEeeeCCcC
Confidence 578988887543
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.88 E-value=2.5 Score=31.99 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=49.3
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CCCCcc
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------KANKYD 103 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~~~~fD 103 (272)
.|+++|=.|++.|. .+..+++. |++|+.++.+++.++...+. . .++..+.+|+.+.. .-++.|
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~---~---~~~~~~~~Dv~~~~~v~~~~~~~g~iD 76 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHAS-GAKVVAVTRTNSDLVSLAKE---C---PGIEPVCVDLGDWDATEKALGGIGPVD 76 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH---S---TTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh---c---CCCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence 57899988987663 45555554 89999999998765544433 2 25788899987654 236899
Q ss_pred EEEEech
Q 024096 104 RIISCGM 110 (272)
Q Consensus 104 ~V~~~~~ 110 (272)
+++.+-.
T Consensus 77 ilVnnAg 83 (242)
T d1cyda_ 77 LLVNNAA 83 (242)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9887643
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=87.62 E-value=0.99 Score=34.94 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=53.4
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.|+.+|=.|++.|. .+..|++. |++|+.+|.+++..+.+.+.+.. ..++.++.+|+.+.. .-
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRY-GAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57889999987764 44555554 89999999999877776666543 346888999987643 12
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
++.|+++.+..+
T Consensus 81 g~iD~lVnnAG~ 92 (268)
T d2bgka1 81 GKLDIMFGNVGV 92 (268)
T ss_dssp SCCCEEEECCCC
T ss_pred CCcceecccccc
Confidence 578999876543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=87.29 E-value=1.9 Score=32.96 Aligned_cols=73 Identities=25% Similarity=0.296 Sum_probs=54.1
Q ss_pred CCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CCC
Q 024096 35 GQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KAN 100 (272)
Q Consensus 35 ~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~~ 100 (272)
|+.+|=-|++.|. ++..|++. |++|+.++.+++.++...+.++..+ .++.++.+|+.+.. .-+
T Consensus 2 gKValITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKE-GLRVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 5556777876653 44555654 8999999999999888888887765 47899999997754 125
Q ss_pred CccEEEEech
Q 024096 101 KYDRIISCGM 110 (272)
Q Consensus 101 ~fD~V~~~~~ 110 (272)
+.|+++.+-.
T Consensus 79 ~iDilVnnAG 88 (257)
T d2rhca1 79 PVDVLVNNAG 88 (257)
T ss_dssp SCSEEEECCC
T ss_pred CCCEEEeccc
Confidence 7898887643
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.97 E-value=1.3 Score=34.28 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=57.1
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC-----------C
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYRQLP-----------K 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~-----------~ 98 (272)
.|+++|=.|++.|. .+..|++. |++|+.++.+++.++.+.+.+.+.+.. .++.++.+|+.+.. .
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~-Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 82 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQE-GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 82 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 56788888877663 45556664 899999999999998888888776543 46899999987743 1
Q ss_pred CCCccEEEEech
Q 024096 99 ANKYDRIISCGM 110 (272)
Q Consensus 99 ~~~fD~V~~~~~ 110 (272)
-++.|+++.+..
T Consensus 83 ~g~iDilvnnAG 94 (272)
T d1xkqa_ 83 FGKIDVLVNNAG 94 (272)
T ss_dssp HSCCCEEEECCC
T ss_pred hCCceEEEeCCc
Confidence 257899888743
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=86.55 E-value=1.6 Score=33.55 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=55.9
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC-----------C
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYRQLP-----------K 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~-----------~ 98 (272)
.|+.+|=-|++.|. .+..|++. |++|+.++.+++.++.+.+.+...+.+ .++.++.+|+.+.. .
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFARE-GAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 82 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 46677877877663 44555554 899999999999988888888776543 46899999997653 1
Q ss_pred CCCccEEEEech
Q 024096 99 ANKYDRIISCGM 110 (272)
Q Consensus 99 ~~~fD~V~~~~~ 110 (272)
-++.|+++.+..
T Consensus 83 ~g~iDilvnnAG 94 (264)
T d1spxa_ 83 FGKLDILVNNAG 94 (264)
T ss_dssp HSCCCEEEECCC
T ss_pred hCCCCEeecccc
Confidence 257898887643
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=86.00 E-value=1.5 Score=33.53 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=54.7
Q ss_pred CCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.++.+|=.|++.| ++..+++. .|++|+.++.+++.++.+.+.++..+ .++.++.+|+.+.. .-
T Consensus 9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 85 (251)
T d2c07a1 9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEH 85 (251)
T ss_dssp SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4677888887665 33333332 48899999999999888888887665 47899999997743 12
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
++.|+++.+...
T Consensus 86 g~iDilvnnag~ 97 (251)
T d2c07a1 86 KNVDILVNNAGI 97 (251)
T ss_dssp SCCCEEEECCCC
T ss_pred CCceeeeecccc
Confidence 689988887543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=85.97 E-value=2.7 Score=30.42 Aligned_cols=100 Identities=13% Similarity=0.202 Sum_probs=62.5
Q ss_pred CEEEEECCCchHHHH--HHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------C-CC--------CCeEEEEcccCCCC
Q 024096 36 QEVLDIGCGWGTLAI--EIVKQTGCKYTGITLSEEQLKYAEIKVREA-------G-LQ--------DHIRFYLCDYRQLP 97 (272)
Q Consensus 36 ~~vLDiG~G~G~~~~--~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~-------g-~~--------~~i~~~~~d~~~~~ 97 (272)
.+|-=||+|+=+.++ .++. .|.+|+.+|++++.++.+.+++... + .. .++.. ..+...+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~-~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~- 81 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSAS-KGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSYGDF- 81 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSSTTG-
T ss_pred CEEEEECcCHHHHHHHHHHHh-CCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-ccccccc-
Confidence 468889998655443 4455 4889999999999988877765422 1 00 01221 2222222
Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC
Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272)
Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272)
...|+|+= .+.+.+ +...++++++.+.++|+-.+.-.+...
T Consensus 82 --~~adlViE-av~E~l--~~K~~lf~~l~~~~~~~~IiaSnTS~l 122 (186)
T d1wdka3 82 --GNVDLVVE-AVVENP--KVKQAVLAEVENHVREDAILASNTSTI 122 (186)
T ss_dssp --GGCSEEEE-CCCSCH--HHHHHHHHHHHTTSCTTCEEEECCSSS
T ss_pred --cccceeee-eecchH--HHHHHHHHHHHhhcCCCeeEEeccccc
Confidence 45677774 344444 445789999999999987776544433
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.86 E-value=1.9 Score=33.15 Aligned_cols=76 Identities=22% Similarity=0.166 Sum_probs=56.7
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------------C
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------------K 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------------~ 98 (272)
.|+++|=-|++.|. .+..+++. |++|+.++.+++.++.+.+.+...+ .++..+.+|+.+.. .
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGF-GAVIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSMF 83 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHHHh
Confidence 47788888887764 55556664 8999999999988888877777665 37899999987643 1
Q ss_pred CCCccEEEEechhh
Q 024096 99 ANKYDRIISCGMIE 112 (272)
Q Consensus 99 ~~~fD~V~~~~~~~ 112 (272)
.+..|+++.+..+.
T Consensus 84 ~g~idilvnnAG~~ 97 (259)
T d1xq1a_ 84 GGKLDILINNLGAI 97 (259)
T ss_dssp TTCCSEEEEECCC-
T ss_pred CCCccccccccccc
Confidence 25789998875443
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=83.48 E-value=0.13 Score=36.84 Aligned_cols=93 Identities=13% Similarity=0.059 Sum_probs=52.4
Q ss_pred CEEEEECCCc-hH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhc
Q 024096 36 QEVLDIGCGW-GT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH 113 (272)
Q Consensus 36 ~~vLDiG~G~-G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~ 113 (272)
++|+=+|+|. |. ++..|++ .+.+|+.++.++...+..+ ..+....................+|+|+..---
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~-~G~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-- 73 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCK-QGHEVQGWLRVPQPYCSVN----LVETDGSIFNESLTANDPDFLATSDLLLVTLKA-- 73 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCCSEEEEE----EECTTSCEEEEEEEESCHHHHHTCSEEEECSCG--
T ss_pred CEEEEECcCHHHHHHHHHHHH-CCCceEEEEcCHHHhhhhc----cccCCccccccccccchhhhhcccceEEEeecc--
Confidence 5789999985 43 4455555 4889999987663221100 001111111111000111122578999985433
Q ss_pred cChhhHHHHHHHHHhcCccCcEEEE
Q 024096 114 VGHDYMEEFFGCCESLLATHGLLVL 138 (272)
Q Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272)
.+....++.+...++++..++.
T Consensus 74 ---~~~~~~~~~l~~~~~~~~~Iv~ 95 (167)
T d1ks9a2 74 ---WQVSDAVKSLASTLPVTTPILL 95 (167)
T ss_dssp ---GGHHHHHHHHHTTSCTTSCEEE
T ss_pred ---cchHHHHHhhccccCcccEEee
Confidence 3447889999999999887765
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=83.28 E-value=0.34 Score=38.28 Aligned_cols=56 Identities=16% Similarity=0.263 Sum_probs=40.5
Q ss_pred CeEEEEcccCCCC---CCCCccEEEEechhhcc--------Ch----hhHHHHHHHHHhcCccCcEEEEEe
Q 024096 85 HIRFYLCDYRQLP---KANKYDRIISCGMIEHV--------GH----DYMEEFFGCCESLLATHGLLVLQF 140 (272)
Q Consensus 85 ~i~~~~~d~~~~~---~~~~fD~V~~~~~~~~~--------~~----~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272)
+-.++++|..+.. +++++|+|+........ .. +.+...++++.++|+|+|.+++..
T Consensus 12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~ 82 (320)
T d1booa_ 12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 82 (320)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccc
Confidence 3488999966533 67899999998764211 11 224567999999999999999853
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=83.13 E-value=0.85 Score=29.07 Aligned_cols=57 Identities=14% Similarity=0.238 Sum_probs=34.0
Q ss_pred chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-ccCCCCCCCCccEEEEechhh
Q 024096 45 WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-DYRQLPKANKYDRIISCGMIE 112 (272)
Q Consensus 45 ~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~~~~~~~fD~V~~~~~~~ 112 (272)
...++..|.++ |..|+|.|..+... .+.++..|. .+..+ +...+ ...|+|+....+.
T Consensus 14 Ms~LA~~L~~~-G~~VsGSD~~~~~~---t~~L~~~Gi----~i~~gh~~~~i---~~~d~vV~SsAI~ 71 (89)
T d1j6ua1 14 MSAVALHEFSN-GNDVYGSNIEETER---TAYLRKLGI----PIFVPHSADNW---YDPDLVIKTPAVR 71 (89)
T ss_dssp HHHHHHHHHHT-TCEEEEECSSCCHH---HHHHHHTTC----CEESSCCTTSC---CCCSEEEECTTCC
T ss_pred HHHHHHHHHhC-CCeEEEEeCCCChh---HHHHHHCCC----eEEeeeccccc---CCCCEEEEecCcC
Confidence 33455666664 99999999975322 223556554 44333 23333 3579999887654
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=82.57 E-value=2.8 Score=32.47 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=53.1
Q ss_pred CCCEEEEECCCch---HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH-HcCCCCCeEEEEcccCCCC-----------C
Q 024096 34 KGQEVLDIGCGWG---TLAIEIVKQTGCKYTGITLSEEQLKYAEIKVR-EAGLQDHIRFYLCDYRQLP-----------K 98 (272)
Q Consensus 34 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~-~~g~~~~i~~~~~d~~~~~-----------~ 98 (272)
.|+++|=-|+..| ..+..|++. |++|+.+|.++...+...+.+. ..+ .++.++.+|+.+.. .
T Consensus 24 ~gK~alITGas~GIG~aiA~~la~~-Ga~Vii~~r~~~~l~~~~~~l~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~ 100 (294)
T d1w6ua_ 24 QGKVAFITGGGTGLGKGMTTLLSSL-GAQCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELIKV 100 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhcC--CceEEEEecccChHHHHHHhhhhhhh
Confidence 5688999998766 345555554 8999999999887766555443 333 46888999987643 2
Q ss_pred CCCccEEEEechh
Q 024096 99 ANKYDRIISCGMI 111 (272)
Q Consensus 99 ~~~fD~V~~~~~~ 111 (272)
.+..|+++.+...
T Consensus 101 ~g~iDilvnnAg~ 113 (294)
T d1w6ua_ 101 AGHPNIVINNAAG 113 (294)
T ss_dssp TCSCSEEEECCCC
T ss_pred ccccchhhhhhhh
Confidence 3678988887543
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=82.14 E-value=6.5 Score=28.15 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=48.4
Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCH-------------------HHHHHHHHHHHHcCCCCCeEEEEc
Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSE-------------------EQLKYAEIKVREAGLQDHIRFYLC 91 (272)
Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~-------------------~~~~~a~~~~~~~g~~~~i~~~~~ 91 (272)
...+.+|+=||.|..+++..+.-. .+.+|+.+|-++ +.+++..+.++..+ +++...
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~g----V~i~l~ 115 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTG----VTLKLN 115 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHT----CEEEES
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCC----eEEEeC
Confidence 345689999999998876544332 588999999764 23444555555554 555554
Q ss_pred ccCCCCCCCCccEEEEechh
Q 024096 92 DYRQLPKANKYDRIISCGMI 111 (272)
Q Consensus 92 d~~~~~~~~~fD~V~~~~~~ 111 (272)
..-.......||.|+.....
T Consensus 116 ~~Vt~~~~~~~d~vilAtG~ 135 (179)
T d1ps9a3 116 HTVTADQLQAFDETILASGI 135 (179)
T ss_dssp CCCCSSSSCCSSEEEECCCE
T ss_pred CEEcccccccceeEEEeecC
Confidence 43333334678888775543
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=82.07 E-value=2 Score=32.80 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=52.6
Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC
Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272)
Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272)
.|+++|=-|++.|. .+..|++. |++|+.++.+++..+.+.+.+. .+.++.++.+|+.+.. .-
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEE-GAKVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 47788888876663 44555554 8999999999987777666553 3457999999997753 12
Q ss_pred CCccEEEEechh
Q 024096 100 NKYDRIISCGMI 111 (272)
Q Consensus 100 ~~fD~V~~~~~~ 111 (272)
++.|+++.+...
T Consensus 81 G~iDiLVnnAg~ 92 (251)
T d1zk4a1 81 GPVSTLVNNAGI 92 (251)
T ss_dssp SSCCEEEECCCC
T ss_pred CCceEEEecccc
Confidence 578988876543
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.54 E-value=5.6 Score=30.95 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=54.8
Q ss_pred CCCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcC---CCCCeEEEEcccCCCC---------
Q 024096 33 SKGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAG---LQDHIRFYLCDYRQLP--------- 97 (272)
Q Consensus 33 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g---~~~~i~~~~~d~~~~~--------- 97 (272)
-.|+++|=-|++.|. .+..|++. |++|+.++.+++.++.+.+.+.... ...++.++.+|+.+..
T Consensus 10 L~gKvalITGas~GIG~aia~~la~~-Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 88 (297)
T d1yxma1 10 LQGQVAIVTGGATGIGKAIVKELLEL-GSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 88 (297)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence 367899988987764 34455554 8999999999988877766665431 1247889999987754
Q ss_pred --CCCCccEEEEech
Q 024096 98 --KANKYDRIISCGM 110 (272)
Q Consensus 98 --~~~~fD~V~~~~~ 110 (272)
.-++.|+++.+..
T Consensus 89 ~~~~G~iDiLVnnAg 103 (297)
T d1yxma1 89 LDTFGKINFLVNNGG 103 (297)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCeEEEEeecc
Confidence 1257899887754
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=80.24 E-value=0.29 Score=37.43 Aligned_cols=53 Identities=8% Similarity=0.048 Sum_probs=36.8
Q ss_pred EEEEcccCCC-C--CCCCccEEEEechhhcc--------Ch----hhHHHHHHHHHhcCccCcEEEEE
Q 024096 87 RFYLCDYRQL-P--KANKYDRIISCGMIEHV--------GH----DYMEEFFGCCESLLATHGLLVLQ 139 (272)
Q Consensus 87 ~~~~~d~~~~-~--~~~~fD~V~~~~~~~~~--------~~----~~~~~~l~~~~~~LkpgG~l~i~ 139 (272)
+++++|..+. . +++++|+|++......- +. +.....++++.++|+|+|.+++.
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~ 73 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence 5788886553 2 67889999998764211 11 12345788999999999998763
|