Citrus Sinensis ID: 024109
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 272 | ||||||
| 255576737 | 272 | ER lumen protein retaining receptor, put | 1.0 | 1.0 | 0.966 | 1e-152 | |
| 224103251 | 272 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.937 | 1e-149 | |
| 224080568 | 272 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.933 | 1e-147 | |
| 388500700 | 272 | unknown [Medicago truncatula] | 1.0 | 1.0 | 0.933 | 1e-147 | |
| 356508031 | 272 | PREDICTED: ER lumen protein retaining re | 1.0 | 1.0 | 0.933 | 1e-147 | |
| 356544080 | 272 | PREDICTED: ER lumen protein retaining re | 1.0 | 1.0 | 0.933 | 1e-146 | |
| 356516732 | 272 | PREDICTED: ER lumen protein retaining re | 1.0 | 1.0 | 0.922 | 1e-146 | |
| 356538534 | 272 | PREDICTED: ER lumen protein retaining re | 1.0 | 1.0 | 0.926 | 1e-145 | |
| 225427894 | 272 | PREDICTED: ER lumen protein retaining re | 1.0 | 1.0 | 0.922 | 1e-144 | |
| 255645423 | 272 | unknown [Glycine max] | 1.0 | 1.0 | 0.911 | 1e-144 |
| >gi|255576737|ref|XP_002529256.1| ER lumen protein retaining receptor, putative [Ricinus communis] gi|223531292|gb|EEF33134.1| ER lumen protein retaining receptor, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust.
Identities = 263/272 (96%), Positives = 269/272 (98%)
Query: 1 MRAPKRPIHAVSTWVRRQPPKVKAFLAVVSGMAALVLLRFIVHDHDNLFVAAEAVHSIGI 60
MRAPKRPIHAVSTWVRRQPPKVKAFLAVV+GMAALV LRFIVHDHDNLFVAAEAVHSIGI
Sbjct: 1 MRAPKRPIHAVSTWVRRQPPKVKAFLAVVAGMAALVFLRFIVHDHDNLFVAAEAVHSIGI 60
Query: 61 SVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHTLLDLATLATTLWVIYM 120
VLIYKLMKEKTCAGLSLKSQELTA+FLAVRLYCSFVMEYDIHTLLDLATL TTLWVIYM
Sbjct: 61 IVLIYKLMKEKTCAGLSLKSQELTAMFLAVRLYCSFVMEYDIHTLLDLATLGTTLWVIYM 120
Query: 121 IRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQ 180
IRFNL+SSYMEDKDNFAIYYVVVPCA+LALLIHPSTSHNI+NRIFWAFCVYLEAVSVLPQ
Sbjct: 121 IRFNLKSSYMEDKDNFAIYYVVVPCAILALLIHPSTSHNIVNRIFWAFCVYLEAVSVLPQ 180
Query: 181 LRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISE 240
LRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLD+RGHLLVALGYGLWPSMVLISE
Sbjct: 181 LRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTRGHLLVALGYGLWPSMVLISE 240
Query: 241 IVQTFILADFCYYYVKSVFGGQLVLRLPSGVV 272
IVQTFILADFCYYYVKSVFGGQLVLRLPSGVV
Sbjct: 241 IVQTFILADFCYYYVKSVFGGQLVLRLPSGVV 272
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103251|ref|XP_002312984.1| predicted protein [Populus trichocarpa] gi|222849392|gb|EEE86939.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224080568|ref|XP_002306165.1| predicted protein [Populus trichocarpa] gi|222849129|gb|EEE86676.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|388500700|gb|AFK38416.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356508031|ref|XP_003522766.1| PREDICTED: ER lumen protein retaining receptor-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356544080|ref|XP_003540483.1| PREDICTED: ER lumen protein retaining receptor-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356516732|ref|XP_003527047.1| PREDICTED: ER lumen protein retaining receptor-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356538534|ref|XP_003537758.1| PREDICTED: ER lumen protein retaining receptor-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|225427894|ref|XP_002273333.1| PREDICTED: ER lumen protein retaining receptor [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255645423|gb|ACU23207.1| unknown [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 272 | ||||||
| TAIR|locus:2047052 | 269 | AT2G21190 "AT2G21190" [Arabido | 0.985 | 0.996 | 0.869 | 2.4e-124 | |
| TAIR|locus:2141796 | 273 | AT4G38790 "AT4G38790" [Arabido | 1.0 | 0.996 | 0.857 | 5.7e-123 | |
| TAIR|locus:2005619 | 272 | AT1G75760 "AT1G75760" [Arabido | 1.0 | 1.0 | 0.819 | 8.5e-120 | |
| TAIR|locus:2198601 | 272 | AT1G19970 "AT1G19970" [Arabido | 1.0 | 1.0 | 0.779 | 7.1e-116 | |
| TAIR|locus:2090255 | 272 | AT3G25160 "AT3G25160" [Arabido | 0.959 | 0.959 | 0.587 | 3.9e-83 | |
| WB|WBGene00016195 | 213 | C28H8.4 [Caenorhabditis elegan | 0.764 | 0.976 | 0.328 | 5e-28 | |
| DICTYBASE|DDB_G0272124 | 218 | kdelr "ER lumen protein retain | 0.757 | 0.944 | 0.315 | 8.4e-26 | |
| FB|FBgn0022268 | 212 | KdelR "KDEL receptor" [Drosoph | 0.757 | 0.971 | 0.324 | 2.2e-25 | |
| TAIR|locus:2013683 | 215 | ERD2 "AT1G29330" [Arabidopsis | 0.764 | 0.967 | 0.344 | 2.9e-25 | |
| WB|WBGene00001331 | 213 | erd-2 [Caenorhabditis elegans | 0.727 | 0.929 | 0.320 | 2.9e-25 |
| TAIR|locus:2047052 AT2G21190 "AT2G21190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1222 (435.2 bits), Expect = 2.4e-124, P = 2.4e-124
Identities = 233/268 (86%), Positives = 245/268 (91%)
Query: 5 KRPIHAVSTWVRRQPPKVKAFLAVVSGMAALVLLRFIVHDHDNLFVAAEAVHSIGISVLI 64
K PIHAVSTWVRRQPPKVKAFLAVVSGMAALVLL+ IVHDHDNLFVAAEAVHSIGISVLI
Sbjct: 2 KTPIHAVSTWVRRQPPKVKAFLAVVSGMAALVLLKLIVHDHDNLFVAAEAVHSIGISVLI 61
Query: 65 YKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFN 124
YKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIH WVIYMIRFN
Sbjct: 62 YKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHTILDLATLGTTLWVIYMIRFN 121
Query: 125 LRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVM 184
L+++YME+KDNFA+YYV+ PC VLA+ IHPSTSHNILNRI W FCVYLEAVSVLPQLRVM
Sbjct: 122 LKTTYMEEKDNFALYYVLAPCVVLAVWIHPSTSHNILNRISWGFCVYLEAVSVLPQLRVM 181
Query: 185 QNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQT 244
QNTKIVEPFTAHYVFALGVARF SCAHWVLQ++D+ G LLV LGYGLWPSMV+ISEIVQT
Sbjct: 182 QNTKIVEPFTAHYVFALGVARFFSCAHWVLQMMDTHGRLLVVLGYGLWPSMVIISEIVQT 241
Query: 245 FILADFCYYYVKSVFGGQLVLRLPSGVV 272
FILADFCYYYVKSVFGGQLVLRLPSGVV
Sbjct: 242 FILADFCYYYVKSVFGGQLVLRLPSGVV 269
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| TAIR|locus:2141796 AT4G38790 "AT4G38790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2005619 AT1G75760 "AT1G75760" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2198601 AT1G19970 "AT1G19970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2090255 AT3G25160 "AT3G25160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| WB|WBGene00016195 C28H8.4 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0272124 kdelr "ER lumen protein retaining receptor" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| FB|FBgn0022268 KdelR "KDEL receptor" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| TAIR|locus:2013683 ERD2 "AT1G29330" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| WB|WBGene00001331 erd-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 272 | |||
| pfam00810 | 143 | pfam00810, ER_lumen_recept, ER lumen protein retai | 1e-48 | |
| COG5196 | 214 | COG5196, ERD2, ER lumen protein retaining receptor | 7e-30 |
| >gnl|CDD|144416 pfam00810, ER_lumen_recept, ER lumen protein retaining receptor | Back alignment and domain information |
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Score = 157 bits (399), Expect = 1e-48
Identities = 55/146 (37%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
Query: 72 TCAGLSLKSQELTAIFLAVRLYCSFVMEYDIH-TLLDLATLATTLWVIYMIRFNLRSSYM 130
+C+GLSLK+Q L AI R F ++ T++ + + ++++ IY+++F +++Y
Sbjct: 1 SCSGLSLKTQILYAIVFLTRYLDLFEGYISLYNTIMKILFIVSSVYTIYLMKFKYKATYD 60
Query: 131 EDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIV 190
D D F I Y++VPC VLAL+ H I W F +YLE+V++LPQL ++Q T V
Sbjct: 61 RDIDTFKIEYLIVPCLVLALIFH---HSYSFLEILWTFSIYLESVAILPQLFMLQKTGEV 117
Query: 191 EPFTAHYVFALGVARFLSCAHWVLQV 216
E T+HY+FALG+ R L +W+ +
Sbjct: 118 ENLTSHYLFALGLYRALYILNWIYRY 143
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Length = 143 |
| >gnl|CDD|227523 COG5196, ERD2, ER lumen protein retaining receptor [Intracellular trafficking and secretion] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 272 | |||
| KOG3106 | 212 | consensus ER lumen protein retaining receptor [Int | 100.0 | |
| COG5196 | 214 | ERD2 ER lumen protein retaining receptor [Intracel | 100.0 | |
| PF00810 | 147 | ER_lumen_recept: ER lumen protein retaining recept | 100.0 | |
| TIGR00951 | 220 | 2A43 Lysosomal Cystine Transporter. | 96.18 | |
| KOG3211 | 230 | consensus Predicted endoplasmic reticulum membrane | 95.84 | |
| PF04193 | 61 | PQ-loop: PQ loop repeat | 93.47 | |
| PF04193 | 61 | PQ-loop: PQ loop repeat | 92.22 | |
| smart00679 | 32 | CTNS Repeated motif present between transmembrane | 84.2 |
| >KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
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Probab=100.00 E-value=8.8e-84 Score=560.94 Aligned_cols=211 Identities=45% Similarity=0.791 Sum_probs=203.9
Q ss_pred ChhHHHHhhHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHhhhhccee-eehhHHHHHHHHHHHHHHHHHHHhhc
Q 024109 45 HDNLFVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFV-MEYDIHTLLDLATLATTLWVIYMIRF 123 (272)
Q Consensus 45 ~~~~~llgdl~hl~s~~iLl~KI~~~KS~~GiSlkTQ~Ly~lVf~~Rl~~~~~-~~y~~~~~~k~~~l~~s~~iiyli~~ 123 (272)
+|.||++||++|++|+++|++||+|+|||+|||+|||+|||+||++||+|.|. .++++|++||++++++|.+++|+|++
T Consensus 1 mn~fr~~gd~~H~~~i~vLi~Ki~ktrsCaGiSlKSQ~L~Alvf~~Ryldlf~~~~s~ynt~mki~fl~~t~~ivymi~~ 80 (212)
T KOG3106|consen 1 MNNFRFAGDLSHLAAIIVLILKIWKTKSCAGISLKSQELFALVFATRYLDLFTFYESLYNTIMKIAFLASTLWIVYMIRF 80 (212)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999886 56778999999999999999999999
Q ss_pred ccccccccccccchhhhhHHHHHHHHHHhCCCCCcchhhhHHHHHHHHHHHhhhhhHHHHHHhcCCccchhHHHHHHHHH
Q 024109 124 NLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGV 203 (272)
Q Consensus 124 kyk~Tyd~~~Dtf~~~~liiP~~vLali~~~~~~~~~~~eilWtFSiyLEsVAILPQL~mlqktg~ve~lTshYv~~LG~ 203 (272)
|+|+|||+|+|||+++|+++||+++|+++||+. .+.|++||||+|||||||||||+|+||+||+|++|+||+||||+
T Consensus 81 k~~~tYd~~~DtFri~~llvp~~vlsl~i~~~~---t~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~ 157 (212)
T KOG3106|consen 81 KLRATYDKEKDTFRIEYLLVPSAVLSLLINHSF---TILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGL 157 (212)
T ss_pred HHHHHHhcccCceeEEEEehhheeeeeeecCCc---cHHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHH
Confidence 999999999999999999999999999999984 48999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccchhhccCCCcchHHHHHHHHHHHHHhhhhhhhhhhhcCCceeeecCC
Q 024109 204 ARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQLVLRLPS 269 (272)
Q Consensus 204 yR~lyl~nWi~ry~~~~~~~~~~~g~g~~~~~~ii~givQt~ly~DFfy~Y~~~v~~G~~~~~LP~ 269 (272)
||++|++|||+|+.+|+ +||++++++|+|||++|+||||+|++++++|++ ++||+
T Consensus 158 yR~ly~~~WI~r~~~e~----------~~~~iai~agiVQT~ly~DFfy~Y~~~v~~g~~-~~LP~ 212 (212)
T KOG3106|consen 158 YRALYIANWIYRYVTED----------FWDPIAIVAGIVQTVLYADFFYLYVTKVLQGKK-LKLPA 212 (212)
T ss_pred HHHHHHHHHHHHHHhhc----------cccchHHHHHHHHHHHHHhHHHHHHHHHHcCCc-CCCCC
Confidence 99999999999998873 799999999999999999999999999999999 99995
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| >COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion] | Back alignment and domain information |
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| >PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway | Back alignment and domain information |
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| >TIGR00951 2A43 Lysosomal Cystine Transporter | Back alignment and domain information |
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| >KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only] | Back alignment and domain information |
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| >PF04193 PQ-loop: PQ loop repeat | Back alignment and domain information |
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| >PF04193 PQ-loop: PQ loop repeat | Back alignment and domain information |
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| >smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00