Citrus Sinensis ID: 024121
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 272 | 2.2.26 [Sep-21-2011] | |||||||
| P17817 | 274 | Pyrroline-5-carboxylate r | yes | no | 1.0 | 0.992 | 0.773 | 1e-120 | |
| Q04708 | 273 | Pyrroline-5-carboxylate r | N/A | no | 0.996 | 0.992 | 0.777 | 1e-119 | |
| P54904 | 276 | Pyrroline-5-carboxylate r | yes | no | 1.0 | 0.985 | 0.762 | 1e-118 | |
| O04016 | 278 | Pyrroline-5-carboxylate r | N/A | no | 0.977 | 0.956 | 0.784 | 1e-117 | |
| Q9HH99 | 270 | Pyrroline-5-carboxylate r | yes | no | 0.966 | 0.974 | 0.439 | 9e-56 | |
| Q5R9X6 | 319 | Pyrroline-5-carboxylate r | yes | no | 0.952 | 0.811 | 0.458 | 2e-55 | |
| P32322 | 319 | Pyrroline-5-carboxylate r | no | no | 0.952 | 0.811 | 0.458 | 2e-55 | |
| Q96C36 | 320 | Pyrroline-5-carboxylate r | no | no | 0.952 | 0.809 | 0.443 | 7e-55 | |
| Q5RAQ3 | 320 | Pyrroline-5-carboxylate r | no | no | 0.952 | 0.809 | 0.443 | 2e-54 | |
| Q17QJ7 | 320 | Pyrroline-5-carboxylate r | yes | no | 0.952 | 0.809 | 0.443 | 3e-54 |
| >sp|P17817|P5CR_SOYBN Pyrroline-5-carboxylate reductase OS=Glycine max PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 429 bits (1104), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/274 (77%), Positives = 239/274 (87%), Gaps = 2/274 (0%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ FPIPAES+ LGFIGAGKMAESIA+G +SGVLPP RI TAVH NL RR AFES GV
Sbjct: 1 MEIFPIPAESYTLGFIGAGKMAESIARGAVRSGVLPPSRIRTAVHFNLARRGAFESFGVT 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
VL N+ VV SDVVV SVKPQ+VKDV ++ PLL++ KLLVSVAAG KLKDLQEW G+
Sbjct: 61 VLPSNDDVVRESDVVVLSVKPQLVKDVVSKLTPLLTKHKLLVSVAAGTKLKDLQEWAGND 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL-- 178
RFIRVMPNTP+AVG+AA+VMSLGG+ATEEDG +I +LFGS+GKIW+A+EK FDAITGL
Sbjct: 121 RFIRVMPNTPAAVGQAASVMSLGGSATEEDGNIIAQLFGSIGKIWKAEEKYFDAITGLSG 180
Query: 179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 238
SGPAY++LAIEALADGGVAAGLPR+L+L LASQTVLGAASMV+++GKHPGQLKDDV SPG
Sbjct: 181 SGPAYVYLAIEALADGGVAAGLPRDLSLSLASQTVLGAASMVSQTGKHPGQLKDDVTSPG 240
Query: 239 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 272
GTTI GIHELE GFRG LMNAVVAAAKRSRELS
Sbjct: 241 GTTITGIHELENGGFRGTLMNAVVAAAKRSRELS 274
|
Glycine max (taxid: 3847) EC: 1EC: .EC: 5EC: .EC: 1EC: .EC: 2 |
| >sp|Q04708|P5CR_PEA Pyrroline-5-carboxylate reductase OS=Pisum sativum GN=PROC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 427 bits (1097), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/274 (77%), Positives = 240/274 (87%), Gaps = 3/274 (1%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PI ++S+ LGFIGAGKMAESIAKG ++SGVLP RI TA HSN RR AFESIG+
Sbjct: 1 MEILPILSDSYTLGFIGAGKMAESIAKGASRSGVLPSSRIVTA-HSNPSRRAAFESIGIT 59
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
VLS N+ VV S+VVVFSVKPQ+VKDV ++++PLL++ KLLVSVAAG+KLKDLQEW GH
Sbjct: 60 VLSSNDDVVRASNVVVFSVKPQLVKDVVLKLKPLLTKDKLLVSVAAGIKLKDLQEWAGHE 119
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL-- 178
RFIRVMPNTP+AVG+AA+VMSLGG ATEED LI +LFGS+GKIW+AD+K FDAITGL
Sbjct: 120 RFIRVMPNTPAAVGQAASVMSLGGAATEEDANLISQLFGSIGKIWKADDKFFDAITGLSG 179
Query: 179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 238
SGPAYI+LAIEALADGGVAAGLPR+LAL LASQTVLGAASM T SGKHPGQLKDDV SPG
Sbjct: 180 SGPAYIYLAIEALADGGVAAGLPRDLALSLASQTVLGAASMATLSGKHPGQLKDDVTSPG 239
Query: 239 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 272
GTTIAG+HELEK GFRG LMNAVVAAAKRSRELS
Sbjct: 240 GTTIAGVHELEKGGFRGTLMNAVVAAAKRSRELS 273
|
Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|P54904|P5CR1_ARATH Pyrroline-5-carboxylate reductase OS=Arabidopsis thaliana GN=PROC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 422 bits (1086), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/274 (76%), Positives = 235/274 (85%), Gaps = 2/274 (0%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PIPAESF +GFIGAGKMAESIA+GV SGVLPP+RICTAVHSNL RRD FES GV
Sbjct: 1 MEILPIPAESFKVGFIGAGKMAESIARGVVASGVLPPNRICTAVHSNLNRRDVFESFGVN 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
V S + VV+ SDVV+FSVKPQVVK +++ LS+ K+LVSVAAG+KL DLQEW+G
Sbjct: 61 VFSTSEEVVKESDVVIFSVKPQVVKKAVTELKSKLSKNKILVSVAAGIKLNDLQEWSGQD 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL-- 178
RFIRVMPNTP+AVGEAA+VMSLG ATEEDG ++ LFG+VGKI +ADEK+FDA+TGL
Sbjct: 121 RFIRVMPNTPAAVGEAASVMSLGTGATEEDGAIVAMLFGAVGKILKADEKMFDAVTGLSG 180
Query: 179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 238
SGPAYIFLAIEALADGGVAAGLPRELAL LASQTVLGAA+MV+K+GKHPG LKDDV SPG
Sbjct: 181 SGPAYIFLAIEALADGGVAAGLPRELALSLASQTVLGAATMVSKTGKHPGVLKDDVTSPG 240
Query: 239 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 272
GTTIAG+HELEK FR LMNAVVAAAKRSRELS
Sbjct: 241 GTTIAGVHELEKGSFRATLMNAVVAAAKRSRELS 274
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|O04016|P5CR_ACTCH Pyrroline-5-carboxylate reductase OS=Actinidia chinensis PE=2 SV=1 | Back alignment and function description |
|---|
Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/269 (78%), Positives = 238/269 (88%), Gaps = 3/269 (1%)
Query: 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD 64
PIP +++ LGFIGAGKMAESIA+GV KSGVLP RI TA H RR+AFES GVKVL
Sbjct: 8 PIPTDTYKLGFIGAGKMAESIARGVVKSGVLPASRIRTA-HLGSARREAFESFGVKVLDR 66
Query: 65 NNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIR 124
N+ VVE SDV++FSVKPQ+VK+V +Q+RPLLS K+LLVS+ AGVKLK+L++W GHSRFIR
Sbjct: 67 NDQVVEDSDVIIFSVKPQIVKEVVLQLRPLLSEKQLLVSIVAGVKLKELEDWAGHSRFIR 126
Query: 125 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL--SGPA 182
VMPNTP+AVGEAA+VMSLG TAT EDGELI KLFG++GKIW+ADEKLFDA+TGL SGPA
Sbjct: 127 VMPNTPAAVGEAASVMSLGATATGEDGELITKLFGAIGKIWKADEKLFDAVTGLSGSGPA 186
Query: 183 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 242
YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMV + GKHPGQLKDDVAS GGTTI
Sbjct: 187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVARGGKHPGQLKDDVASAGGTTI 246
Query: 243 AGIHELEKSGFRGILMNAVVAAAKRSREL 271
AGIHELEK GFRG LMNAVV+A KRS+E+
Sbjct: 247 AGIHELEKGGFRGTLMNAVVSATKRSQEI 275
|
Actinidia chinensis (taxid: 3625) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q9HH99|P5CR_METAC Pyrroline-5-carboxylate reductase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=proC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (552), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 117/266 (43%), Positives = 174/266 (65%), Gaps = 3/266 (1%)
Query: 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAV 68
E+ +GFIGAGKM ++ +G K+G++ P+ I + +D +G++V +DN +
Sbjct: 2 ENQKIGFIGAGKMGSALMQGTIKAGIVTPENIGASDVYEPFLKDLQAKLGIRVSTDNAVI 61
Query: 69 VEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE-WTGHSRFIRVMP 127
V SD+++ +VKPQ + V ++ ++ +KL++S+AAGV L ++ +R +RVMP
Sbjct: 62 VRESDILILAVKPQTLSSVLSNLKNEITSEKLVISIAAGVPLSTYEDALLEGTRVVRVMP 121
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIF 185
N + V EAA+ ++ G AT ED + ++F +VG + E L DA+TGLSG PA+IF
Sbjct: 122 NIAATVSEAASGIAPGKNATPEDLKAALEIFSAVGTAVQVPESLMDAVTGLSGSGPAFIF 181
Query: 186 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245
IEA+ADG V G+ R+ AL LA+QTVLGAA M ++G HPG+LKD V SP GTTI GI
Sbjct: 182 PVIEAMADGAVLEGMDRKSALTLAAQTVLGAAKMALETGMHPGELKDMVTSPAGTTIQGI 241
Query: 246 HELEKSGFRGILMNAVVAAAKRSREL 271
H LE++G R MNAV+ A++RS+EL
Sbjct: 242 HSLEEAGIRAAFMNAVIRASERSKEL 267
|
Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q5R9X6|P5CR1_PONAB Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Pongo abelii GN=PYCR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 215 bits (548), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/266 (45%), Positives = 167/266 (62%), Gaps = 7/266 (2%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEY 71
+GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N V++
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 62
Query: 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
SDV+ +VKP ++ + +I + + ++VS AAGV + K L + R IR M
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMT 122
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIF 185
NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSG PAY F
Sbjct: 123 NTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 186 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245
A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPGG TI +
Sbjct: 183 TALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHAL 242
Query: 246 HELEKSGFRGILMNAVVAAAKRSREL 271
H LE GFR +L+NAV A+ R+REL
Sbjct: 243 HVLESGGFRSLLINAVEASCIRTREL 268
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. Can utilize both NAD and NADP, but has higher affinity for NAD. Involved in the cellular response to oxidative stress. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|P32322|P5CR1_HUMAN Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Homo sapiens GN=PYCR1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 215 bits (548), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/266 (45%), Positives = 167/266 (62%), Gaps = 7/266 (2%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEY 71
+GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N V++
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 62
Query: 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
SDV+ +VKP ++ + +I + + ++VS AAGV + K L + R IR M
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMT 122
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIF 185
NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSG PAY F
Sbjct: 123 NTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 186 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245
A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPGG TI +
Sbjct: 183 TALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHAL 242
Query: 246 HELEKSGFRGILMNAVVAAAKRSREL 271
H LE GFR +L+NAV A+ R+REL
Sbjct: 243 HVLESGGFRSLLINAVEASCIRTREL 268
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. Can utilize both NAD and NADP, but has higher affinity for NAD. Involved in the cellular response to oxidative stress. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q96C36|P5CR2_HUMAN Pyrroline-5-carboxylate reductase 2 OS=Homo sapiens GN=PYCR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (544), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 166/266 (62%), Gaps = 7/266 (2%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEY 71
+GFIGAG++A ++A+G +G+L +I ++ NL A +GV + N V++
Sbjct: 3 VGFIGAGQLAYALARGFTAAGILSAHKIIASSPEMNLPTVSALRKMGVNLTRSNKETVKH 62
Query: 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
SDV+ +VKP ++ + +I + + ++VS AAGV + K L + + IR M
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKKLMAFQPAPKVIRCMT 122
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIF 185
NTP V E ATV + G A EDG+L+ +L SVG +E L DA+TGLSG PAY F
Sbjct: 123 NTPVVVQEGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 186 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245
+A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HP QLKD+V SPGG TI +
Sbjct: 183 MALDALADGGVKMGLPRRLAIQLGAQALLGAAKMLLDSEQHPCQLKDNVCSPGGATIHAL 242
Query: 246 HELEKSGFRGILMNAVVAAAKRSREL 271
H LE GFR +L+NAV A+ R+REL
Sbjct: 243 HFLESGGFRSLLINAVEASCIRTREL 268
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. In some cell types, such as erythrocytes, its primary function may be the generation of NADP(+). Can utilize both NAD and NADP. Has higher affinity for NADP, but higher catalytic efficiency with NADH. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q5RAQ3|P5CR2_PONAB Pyrroline-5-carboxylate reductase 2 OS=Pongo abelii GN=PYCR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (539), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 165/266 (62%), Gaps = 7/266 (2%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEY 71
+GFIGAG++A ++A+G +G+L +I ++ NL A +GV + N V++
Sbjct: 3 VGFIGAGQLAYALARGFTAAGILSAHKIIASSPEMNLPTVSALRKMGVNLTRSNKETVKH 62
Query: 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
SDV+ +VKP ++ + +I + ++VS AAGV + K L + + IR M
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADVQAGHIVVSCAAGVTISSVEKKLMAFQPAPKVIRCMT 122
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIF 185
NTP V E ATV + G A EDG+L+ +L SVG +E L DA+TGLSG PAY F
Sbjct: 123 NTPVVVQEGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 186 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245
+A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HP QLKD+V SPGG TI +
Sbjct: 183 MALDALADGGVKMGLPRRLAIQLGAQALLGAAKMLLDSEQHPCQLKDNVCSPGGATIHAL 242
Query: 246 HELEKSGFRGILMNAVVAAAKRSREL 271
H LE GFR +L+NAV A+ R+REL
Sbjct: 243 HFLESGGFRSLLINAVEASCIRTREL 268
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. In some cell types, such as erythrocytes, its primary function may be the generation of NADP(+). Can utilize both NAD and NADP. Has higher affinity for NADP, but higher catalytic efficiency with NADH. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q17QJ7|P5CR2_BOVIN Pyrroline-5-carboxylate reductase 2 OS=Bos taurus GN=PYCR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 166/266 (62%), Gaps = 7/266 (2%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEY 71
+GFIGAG++A ++A+G +G+L +I ++ +L A +GV + N V +
Sbjct: 3 VGFIGAGQLACALARGFTAAGILSAHKIIASSPEMDLPTVSALRKMGVNLTRSNKETVRH 62
Query: 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
SDV+ +VKP ++ + +I + + ++VS AAGV + K L + + IR M
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKKLMAFQPAPKVIRCMT 122
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIF 185
NTP V E ATV + G A EDG+L+ +L SVG +E L DA+TGLSG PAY F
Sbjct: 123 NTPVLVREGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 186 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245
+A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V SPGG TI +
Sbjct: 183 MALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPGQLKDNVCSPGGATIHAL 242
Query: 246 HELEKSGFRGILMNAVVAAAKRSREL 271
H LE GFR +L+NAV A+ R+REL
Sbjct: 243 HFLESGGFRSLLINAVEASCIRTREL 268
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. In some cell types, such as erythrocytes, its primary function may be the generation of NADP(+). Can utilize both NAD and NADP. Has higher affinity for NADP, but higher catalytic efficiency with NADH. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 272 | ||||||
| 224086867 | 279 | predicted protein [Populus trichocarpa] | 0.981 | 0.956 | 0.810 | 1e-121 | |
| 357509475 | 274 | Pyrroline-5-carboxylate reductase [Medic | 1.0 | 0.992 | 0.773 | 1e-119 | |
| 351720961 | 274 | pyrroline-5-carboxylate reductase [Glyci | 1.0 | 0.992 | 0.773 | 1e-118 | |
| 296882319 | 276 | pyrroline-5-carboxylate reductase [Arabi | 1.0 | 0.985 | 0.777 | 1e-118 | |
| 449449789 | 276 | PREDICTED: pyrroline-5-carboxylate reduc | 1.0 | 0.985 | 0.781 | 1e-118 | |
| 417540 | 273 | RecName: Full=Pyrroline-5-carboxylate re | 0.996 | 0.992 | 0.777 | 1e-117 | |
| 13161407 | 274 | VuP5CR [Vigna unguiculata] | 1.0 | 0.992 | 0.770 | 1e-117 | |
| 356504710 | 274 | PREDICTED: pyrroline-5-carboxylate reduc | 1.0 | 0.992 | 0.766 | 1e-116 | |
| 15241505 | 276 | Pyrroline-5-carboxylate reductase [Arabi | 1.0 | 0.985 | 0.762 | 1e-116 | |
| 312283283 | 276 | unnamed protein product [Thellungiella h | 1.0 | 0.985 | 0.773 | 1e-116 |
| >gi|224086867|ref|XP_002307988.1| predicted protein [Populus trichocarpa] gi|222853964|gb|EEE91511.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/269 (81%), Positives = 240/269 (89%), Gaps = 2/269 (0%)
Query: 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN 65
I E++ LGFIGAGKMAESIAKG +SG LPP RI T++HSN RR AF+S+GVKVL N
Sbjct: 9 IQTETYKLGFIGAGKMAESIAKGAVQSGFLPPPRISTSIHSNPARRLAFDSLGVKVLPQN 68
Query: 66 NAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRV 125
VVE SDVV+FSVKPQVV+DV +++RPLL++ KLLVS+AAG KLKDLQEW GHSRFIRV
Sbjct: 69 RNVVEESDVVIFSVKPQVVRDVVLELRPLLTKDKLLVSIAAGTKLKDLQEWAGHSRFIRV 128
Query: 126 MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL--SGPAY 183
+PNTPSAVGEAA+VM LGG ATEEDGEL+ KLFGSVGKIWRADEKLFDAI GL SGPAY
Sbjct: 129 VPNTPSAVGEAASVMCLGGAATEEDGELVAKLFGSVGKIWRADEKLFDAIVGLSGSGPAY 188
Query: 184 IFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIA 243
I+LAIEALADGGVAAGLPRELA+GLASQTVLGAASM +K+GKHPGQLKDDVASPGGTTIA
Sbjct: 189 IYLAIEALADGGVAAGLPRELAMGLASQTVLGAASMASKTGKHPGQLKDDVASPGGTTIA 248
Query: 244 GIHELEKSGFRGILMNAVVAAAKRSRELS 272
GIHELEK GFRG LMNAVVAAAKRSRELS
Sbjct: 249 GIHELEKGGFRGTLMNAVVAAAKRSRELS 277
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357509475|ref|XP_003625026.1| Pyrroline-5-carboxylate reductase [Medicago truncatula] gi|355500041|gb|AES81244.1| Pyrroline-5-carboxylate reductase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/274 (77%), Positives = 242/274 (88%), Gaps = 2/274 (0%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PIPA+S+ LGFIGAGKMAESIAKG +SGVL P RI TA+HSN RR AFESIG+
Sbjct: 1 MEIIPIPADSYTLGFIGAGKMAESIAKGAVRSGVLSPSRIKTAIHSNPARRTAFESIGIT 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
VLS N+ VV S+VVVFSVKPQ++KDV ++++PLL++ KLLVSVAAG+K+KDLQEW GH
Sbjct: 61 VLSSNDDVVRDSNVVVFSVKPQLLKDVVLKLKPLLTKDKLLVSVAAGIKMKDLQEWAGHE 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL-- 178
RFIRVMPNT + VGEAA+VMSLGG ATEED LI +LFGS+GKIW+AD+K FDAITGL
Sbjct: 121 RFIRVMPNTAATVGEAASVMSLGGAATEEDANLISQLFGSIGKIWKADDKYFDAITGLSG 180
Query: 179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 238
SGPAYI+LAIEALADGGVAAGLPR+LAL LASQTVLGAASM T+SGKHPGQLKDDV SPG
Sbjct: 181 SGPAYIYLAIEALADGGVAAGLPRDLALSLASQTVLGAASMATQSGKHPGQLKDDVTSPG 240
Query: 239 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 272
GTTIAG+HELEK+GFRGILMNAVVAAAKRS+ELS
Sbjct: 241 GTTIAGVHELEKAGFRGILMNAVVAAAKRSQELS 274
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351720961|ref|NP_001235914.1| pyrroline-5-carboxylate reductase [Glycine max] gi|130972|sp|P17817.1|P5CR_SOYBN RecName: Full=Pyrroline-5-carboxylate reductase; Short=P5C reductase; Short=P5CR gi|18724|emb|CAA34401.1| unnamed protein product [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/274 (77%), Positives = 239/274 (87%), Gaps = 2/274 (0%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ FPIPAES+ LGFIGAGKMAESIA+G +SGVLPP RI TAVH NL RR AFES GV
Sbjct: 1 MEIFPIPAESYTLGFIGAGKMAESIARGAVRSGVLPPSRIRTAVHFNLARRGAFESFGVT 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
VL N+ VV SDVVV SVKPQ+VKDV ++ PLL++ KLLVSVAAG KLKDLQEW G+
Sbjct: 61 VLPSNDDVVRESDVVVLSVKPQLVKDVVSKLTPLLTKHKLLVSVAAGTKLKDLQEWAGND 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL-- 178
RFIRVMPNTP+AVG+AA+VMSLGG+ATEEDG +I +LFGS+GKIW+A+EK FDAITGL
Sbjct: 121 RFIRVMPNTPAAVGQAASVMSLGGSATEEDGNIIAQLFGSIGKIWKAEEKYFDAITGLSG 180
Query: 179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 238
SGPAY++LAIEALADGGVAAGLPR+L+L LASQTVLGAASMV+++GKHPGQLKDDV SPG
Sbjct: 181 SGPAYVYLAIEALADGGVAAGLPRDLSLSLASQTVLGAASMVSQTGKHPGQLKDDVTSPG 240
Query: 239 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 272
GTTI GIHELE GFRG LMNAVVAAAKRSRELS
Sbjct: 241 GTTITGIHELENGGFRGTLMNAVVAAAKRSRELS 274
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296882319|gb|ADH83382.1| pyrroline-5-carboxylate reductase [Arabis stelleri] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/274 (77%), Positives = 236/274 (86%), Gaps = 2/274 (0%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PIPAESF +GF+GAGKMAESIA+GV SGVLPP+RICTAVHSNL RRD FES GV
Sbjct: 1 MEILPIPAESFKVGFVGAGKMAESIARGVVASGVLPPNRICTAVHSNLNRRDVFESFGVN 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
V S + VV+ SDVV+FSVKPQVVK ++ +S+ KLLVSVAAG+KLKDLQEW+G
Sbjct: 61 VFSSSEEVVKESDVVIFSVKPQVVKKAVTELSSKVSKNKLLVSVAAGIKLKDLQEWSGQD 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL-- 178
RFIRVMPNTP+AVGEAATVMSLG ATEEDGEL+ KLFGSVGKI RADEK+FDA+TGL
Sbjct: 121 RFIRVMPNTPAAVGEAATVMSLGTAATEEDGELVAKLFGSVGKILRADEKMFDAVTGLSG 180
Query: 179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 238
SGPAYI+LAIEALADGGVAAGL RELALGLASQTVLGAA+MV+K+GKHPG LKDDV SPG
Sbjct: 181 SGPAYIYLAIEALADGGVAAGLHRELALGLASQTVLGAATMVSKAGKHPGVLKDDVTSPG 240
Query: 239 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 272
GTTIAG+HELEK FR LMNAVVAAA RSRELS
Sbjct: 241 GTTIAGVHELEKGSFRATLMNAVVAAANRSRELS 274
|
Source: Arabis stelleri Species: Arabis stelleri Genus: Arabis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449789|ref|XP_004142647.1| PREDICTED: pyrroline-5-carboxylate reductase-like [Cucumis sativus] gi|449527143|ref|XP_004170572.1| PREDICTED: pyrroline-5-carboxylate reductase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/274 (78%), Positives = 241/274 (87%), Gaps = 2/274 (0%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PI +++ LGFIGAGKMAESIAKG+ +SG+LPP RI TAVHSN RR AFES GV+
Sbjct: 1 MEVLPISIDAYRLGFIGAGKMAESIAKGIVQSGLLPPSRISTAVHSNPSRRIAFESFGVR 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
VL N+ VVE SDVV+ SVKPQVVK+V +++RPLLS KKLLVSVAAGVKLKDLQ+W GH+
Sbjct: 61 VLPKNDNVVEESDVVILSVKPQVVKNVVLKLRPLLSGKKLLVSVAAGVKLKDLQDWAGHN 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL-- 178
RFIRVMPNTP+AVGEAA+VMSLG A +EDG+L+ KLFGSVGKIW A+EK FDA+TGL
Sbjct: 121 RFIRVMPNTPAAVGEAASVMSLGEGAIKEDGQLVAKLFGSVGKIWEAEEKYFDAVTGLSG 180
Query: 179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 238
SGPAYIFLAIEALADGGVAAGLPRELA+GLASQTVLGAASMVTK+GKHPGQLKDDV SPG
Sbjct: 181 SGPAYIFLAIEALADGGVAAGLPRELAMGLASQTVLGAASMVTKTGKHPGQLKDDVTSPG 240
Query: 239 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 272
GTTIAGIHELEK G RG+ MNAVVAAAKR +ELS
Sbjct: 241 GTTIAGIHELEKGGLRGMFMNAVVAAAKRGQELS 274
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|417540|sp|Q04708.1|P5CR_PEA RecName: Full=Pyrroline-5-carboxylate reductase; Short=P5C reductase; Short=P5CR gi|20851|emb|CAA44646.1| pyrroline carboxylate reductase [Pisum sativum] gi|445614|prf||1909360A pyrroline carboxylate reductase | Back alignment and taxonomy information |
|---|
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/274 (77%), Positives = 240/274 (87%), Gaps = 3/274 (1%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PI ++S+ LGFIGAGKMAESIAKG ++SGVLP RI TA HSN RR AFESIG+
Sbjct: 1 MEILPILSDSYTLGFIGAGKMAESIAKGASRSGVLPSSRIVTA-HSNPSRRAAFESIGIT 59
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
VLS N+ VV S+VVVFSVKPQ+VKDV ++++PLL++ KLLVSVAAG+KLKDLQEW GH
Sbjct: 60 VLSSNDDVVRASNVVVFSVKPQLVKDVVLKLKPLLTKDKLLVSVAAGIKLKDLQEWAGHE 119
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL-- 178
RFIRVMPNTP+AVG+AA+VMSLGG ATEED LI +LFGS+GKIW+AD+K FDAITGL
Sbjct: 120 RFIRVMPNTPAAVGQAASVMSLGGAATEEDANLISQLFGSIGKIWKADDKFFDAITGLSG 179
Query: 179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 238
SGPAYI+LAIEALADGGVAAGLPR+LAL LASQTVLGAASM T SGKHPGQLKDDV SPG
Sbjct: 180 SGPAYIYLAIEALADGGVAAGLPRDLALSLASQTVLGAASMATLSGKHPGQLKDDVTSPG 239
Query: 239 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 272
GTTIAG+HELEK GFRG LMNAVVAAAKRSRELS
Sbjct: 240 GTTIAGVHELEKGGFRGTLMNAVVAAAKRSRELS 273
|
Source: Pisum sativum Species: Pisum sativum Genus: Pisum Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|13161407|dbj|BAB33038.1| VuP5CR [Vigna unguiculata] | Back alignment and taxonomy information |
|---|
Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/274 (77%), Positives = 236/274 (86%), Gaps = 2/274 (0%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PIP +++ LGFIGAGKMAESIA+G +SGVLPP RI TAVHSN RR AFES GV
Sbjct: 1 MEIAPIPVDTYTLGFIGAGKMAESIARGAVRSGVLPPSRIRTAVHSNPARRTAFESFGVT 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
VLS N+ VV S+VVV SVKPQ+VKDV +++P++++ KLLVSVAAGVKLKDLQEW G
Sbjct: 61 VLSSNDEVVRQSNVVVLSVKPQLVKDVVSKLKPIITKDKLLVSVAAGVKLKDLQEWAGSD 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL-- 178
RFIRVMPNTP+AVGEAA+VMSLG ATEEDG +I KLFGS+GKIWRA+EK FD ITGL
Sbjct: 121 RFIRVMPNTPAAVGEAASVMSLGAAATEEDGNVIAKLFGSIGKIWRAEEKYFDGITGLSG 180
Query: 179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 238
SGPAYI+LAIEALADGGVAAGLPR+L+L LASQTVLGAASMVT+SGKHPGQLKDDV SPG
Sbjct: 181 SGPAYIYLAIEALADGGVAAGLPRDLSLSLASQTVLGAASMVTQSGKHPGQLKDDVTSPG 240
Query: 239 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 272
GTTI GIHELE GFRG LMNAVVAAAKRSRELS
Sbjct: 241 GTTITGIHELENGGFRGTLMNAVVAAAKRSRELS 274
|
Source: Vigna unguiculata Species: Vigna unguiculata Genus: Vigna Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504710|ref|XP_003521138.1| PREDICTED: pyrroline-5-carboxylate reductase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/274 (76%), Positives = 236/274 (86%), Gaps = 2/274 (0%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PIPA+S+ LGFIGAGKMAESIA+G +SGVLPP RI TAVHSN RRD FES GV
Sbjct: 1 MEIVPIPADSYNLGFIGAGKMAESIARGAVRSGVLPPSRIRTAVHSNPARRDTFESFGVT 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
VL N+ VV S+VVVFSVKPQ+VKDV ++ PLL++ KLLVSVAAG KLKDLQEW G+
Sbjct: 61 VLPSNDDVVRESNVVVFSVKPQLVKDVVFKLTPLLTKNKLLVSVAAGTKLKDLQEWAGND 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL-- 178
RFIRVMPNTP+AVGEAA+VMSLGG+ATEEDG +I KL GS+GKIW+A+EK FDAITGL
Sbjct: 121 RFIRVMPNTPAAVGEAASVMSLGGSATEEDGNIIAKLLGSIGKIWKAEEKYFDAITGLSG 180
Query: 179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 238
SGPAY++LAIEALADGGVAAGLPR+L+L LASQTVLGAASMV ++GKHPGQLKDDV SPG
Sbjct: 181 SGPAYVYLAIEALADGGVAAGLPRDLSLSLASQTVLGAASMVIQTGKHPGQLKDDVTSPG 240
Query: 239 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 272
GTTI GIHELE GFRG LMNAVVAA KRSRELS
Sbjct: 241 GTTITGIHELENGGFRGTLMNAVVAATKRSRELS 274
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241505|ref|NP_196984.1| Pyrroline-5-carboxylate reductase [Arabidopsis thaliana] gi|1709786|sp|P54904.1|P5CR1_ARATH RecName: Full=Pyrroline-5-carboxylate reductase; Short=P5C reductase; Short=P5CR; AltName: Full=Protein EMBRYO DEFECTIVE 2772 gi|15294224|gb|AAK95289.1|AF410303_1 AT5g14800/T9L3_100 [Arabidopsis thaliana] gi|166815|gb|AAA61346.1| pyrroline carboxylate reductase [Arabidopsis thaliana] gi|1632776|emb|CAA70148.1| T5r protein [Arabidopsis thaliana] gi|9755748|emb|CAC01879.1| pyrroline-5-carboxylate reductase [Arabidopsis thaliana] gi|20453291|gb|AAM19884.1| AT5g14800/T9L3_100 [Arabidopsis thaliana] gi|21593123|gb|AAM65072.1| pyrroline-5-carboxylate reductase [Arabidopsis thaliana] gi|332004695|gb|AED92078.1| Pyrroline-5-carboxylate reductase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/274 (76%), Positives = 235/274 (85%), Gaps = 2/274 (0%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PIPAESF +GFIGAGKMAESIA+GV SGVLPP+RICTAVHSNL RRD FES GV
Sbjct: 1 MEILPIPAESFKVGFIGAGKMAESIARGVVASGVLPPNRICTAVHSNLNRRDVFESFGVN 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
V S + VV+ SDVV+FSVKPQVVK +++ LS+ K+LVSVAAG+KL DLQEW+G
Sbjct: 61 VFSTSEEVVKESDVVIFSVKPQVVKKAVTELKSKLSKNKILVSVAAGIKLNDLQEWSGQD 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL-- 178
RFIRVMPNTP+AVGEAA+VMSLG ATEEDG ++ LFG+VGKI +ADEK+FDA+TGL
Sbjct: 121 RFIRVMPNTPAAVGEAASVMSLGTGATEEDGAIVAMLFGAVGKILKADEKMFDAVTGLSG 180
Query: 179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 238
SGPAYIFLAIEALADGGVAAGLPRELAL LASQTVLGAA+MV+K+GKHPG LKDDV SPG
Sbjct: 181 SGPAYIFLAIEALADGGVAAGLPRELALSLASQTVLGAATMVSKTGKHPGVLKDDVTSPG 240
Query: 239 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 272
GTTIAG+HELEK FR LMNAVVAAAKRSRELS
Sbjct: 241 GTTIAGVHELEKGSFRATLMNAVVAAAKRSRELS 274
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312283283|dbj|BAJ34507.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/274 (77%), Positives = 233/274 (85%), Gaps = 2/274 (0%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PI AESF +GFIGAGKMAESIA+GV SG+LPP RI TAVHSNL RR FES GV
Sbjct: 1 MEILPISAESFKVGFIGAGKMAESIARGVVASGMLPPHRISTAVHSNLNRRQVFESFGVN 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
V S + VV+ SDVV+FSVKPQVVK ++R LS+ KLLVSVAAG+KLKDLQEW+G
Sbjct: 61 VFSSSEEVVKESDVVIFSVKPQVVKKAVTELRTKLSKDKLLVSVAAGIKLKDLQEWSGQD 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL-- 178
RFIRVMPNTP+AVGEAA+VMSLG ATEEDG L+ KLFGSVGKI RADEK+FDA+TGL
Sbjct: 121 RFIRVMPNTPAAVGEAASVMSLGTAATEEDGALVAKLFGSVGKILRADEKMFDAVTGLSG 180
Query: 179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 238
SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAA+MV+K+GKHPG LKDDV SPG
Sbjct: 181 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAATMVSKTGKHPGVLKDDVTSPG 240
Query: 239 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 272
GTTIAG+HELEK FR LMNAVVAAA RSRELS
Sbjct: 241 GTTIAGVHELEKGSFRATLMNAVVAAANRSRELS 274
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 272 | ||||||
| TAIR|locus:2185435 | 276 | P5CR "pyrroline-5- carboxylate | 1.0 | 0.985 | 0.708 | 2.9e-96 | |
| WB|WBGene00010924 | 279 | M153.1 [Caenorhabditis elegans | 0.933 | 0.910 | 0.424 | 4.1e-49 | |
| TIGR_CMR|GSU_2541 | 270 | GSU_2541 "pyrroline-5-carboxyl | 0.948 | 0.955 | 0.435 | 1.4e-46 | |
| UNIPROTKB|B4DMU0 | 346 | PYCR1 "Pyrroline-5-carboxylate | 0.966 | 0.760 | 0.429 | 4.8e-46 | |
| ZFIN|ZDB-GENE-040426-1675 | 320 | pycr1 "pyrroline-5-carboxylate | 0.952 | 0.809 | 0.421 | 4.8e-46 | |
| FB|FBgn0038516 | 273 | CG5840 [Drosophila melanogaste | 0.952 | 0.948 | 0.420 | 7.9e-46 | |
| ZFIN|ZDB-GENE-050522-26 | 362 | zgc:110655 "zgc:110655" [Danio | 0.952 | 0.715 | 0.417 | 1e-45 | |
| UNIPROTKB|P32322 | 319 | PYCR1 "Pyrroline-5-carboxylate | 0.952 | 0.811 | 0.432 | 1.3e-45 | |
| UNIPROTKB|Q5R9X6 | 319 | PYCR1 "Pyrroline-5-carboxylate | 0.952 | 0.811 | 0.432 | 1.3e-45 | |
| UNIPROTKB|F1S8R2 | 320 | LOC100524702 "Pyrroline-5-carb | 0.952 | 0.809 | 0.421 | 3.4e-45 |
| TAIR|locus:2185435 P5CR "pyrroline-5- carboxylate (P5C) reductase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
Identities = 194/274 (70%), Positives = 218/274 (79%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PIPAESF +GFIGAGKMAESIA+GV SGVLPP+RICTAVHSNL RRD FES GV
Sbjct: 1 MEILPIPAESFKVGFIGAGKMAESIARGVVASGVLPPNRICTAVHSNLNRRDVFESFGVN 60
Query: 61 VLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
V S + +++ LS+ K+LVSVAAG+KL DLQEW+G
Sbjct: 61 VFSTSEEVVKESDVVIFSVKPQVVKKAVTELKSKLSKNKILVSVAAGIKLNDLQEWSGQD 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG 180
RFIRVMPNTP+AVGEAA+VMSLG ATEEDG ++ LFG+VGKI +ADEK+FDA+TGLSG
Sbjct: 121 RFIRVMPNTPAAVGEAASVMSLGTGATEEDGAIVAMLFGAVGKILKADEKMFDAVTGLSG 180
Query: 181 --PAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 238
PAYIFLAIEALADGGVAAGLPRELAL LASQTVLGAA+MV+K+GKHPG LKDDV SPG
Sbjct: 181 SGPAYIFLAIEALADGGVAAGLPRELALSLASQTVLGAATMVSKTGKHPGVLKDDVTSPG 240
Query: 239 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 272
GTTIAG+HELEK FR LMNAVVAAAKRSRELS
Sbjct: 241 GTTIAGVHELEKGSFRATLMNAVVAAAKRSRELS 274
|
|
| WB|WBGene00010924 M153.1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 112/264 (42%), Positives = 160/264 (60%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF----ESIGVKVLSDNNAX 68
+GFIGAGKMA+++A+G+ SG + D I + S+ KR + F +++G+ DN
Sbjct: 3 IGFIGAGKMAQALARGLINSGRITADNI---IASSPKRDEVFLDQCKALGLNTTHDNAEV 59
Query: 69 XXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMP 127
A +I P LS++ L+VS+A G+ +++++ SR +RVMP
Sbjct: 60 VQKSDVVFLAVKPVHVSKVASEIAPALSKEHLVVSIALGITIRNIESLLPTKSRVVRVMP 119
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIF 185
NTPS V A+ ++G + D E + KL +VG E D +TGLSG P+Y+F
Sbjct: 120 NTPSVVRAGASAFAMGSACRDGDAETVEKLLSTVGFAVEVPEIHIDPVTGLSGSGPSYMF 179
Query: 186 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245
IE LADGGV GLPR+LAL LA+ T+LGAA MV ++G HP QLKDDV SP G+++ G+
Sbjct: 180 AVIEGLADGGVKVGLPRDLALKLAAYTLLGAAKMVLETGIHPAQLKDDVQSPAGSSVYGM 239
Query: 246 HELEKSGFRGILMNAVVAAAKRSR 269
H+LE G +G+LM+AV AA RSR
Sbjct: 240 HKLESGGLKGVLMDAVEAATNRSR 263
|
|
| TIGR_CMR|GSU_2541 GSU_2541 "pyrroline-5-carboxylate reductase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 114/262 (43%), Positives = 151/262 (57%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXX 72
LGFIG G MAE+I KG+ GV D + A +R + G+ V +DN
Sbjct: 7 LGFIGGGNMAEAIIKGLLAGGVAAAD-VMVAEPVAARREYLHGTYGIDVCADNGRVAAAA 65
Query: 73 XXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS-RFIRVMPNTPS 131
+ P KLL+S+ AG+ D++E G + R IRVMPNTP+
Sbjct: 66 DALVMAVKPQVFRGMVAALGPAGLDGKLLISIMAGITTADMEEVCGSAARVIRVMPNTPA 125
Query: 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIFLAIE 189
V E A+ + G AT++D +F VG +EKL DA+TG+SG PAY+FL +E
Sbjct: 126 LVLEGASTLCRGRNATDDDLFFATGIFDLVGTTCVVEEKLMDAVTGVSGCGPAYVFLFME 185
Query: 190 ALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELE 249
AL+D GV GLPR++A LA+QTVLGAA ++ ++G HPG LK+ V SPGG+TIAGI LE
Sbjct: 186 ALSDAGVKNGLPRDVATRLAAQTVLGAARLLLETGDHPGVLKEKVTSPGGSTIAGIASLE 245
Query: 250 KSGFRGILMNAVVAAAKRSREL 271
+ FRG +M AV AA RS EL
Sbjct: 246 RDAFRGAVMAAVDAATARSAEL 267
|
|
| UNIPROTKB|B4DMU0 PYCR1 "Pyrroline-5-carboxylate reductase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 116/270 (42%), Positives = 155/270 (57%)
Query: 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNA 67
+S +GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N
Sbjct: 26 DSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKE 85
Query: 68 XXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFI 123
+I + + ++VS AAGV + K L + R I
Sbjct: 86 TVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVI 145
Query: 124 RVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--P 181
R M NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSG P
Sbjct: 146 RCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGP 205
Query: 182 AYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTT 241
AY F A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPGG T
Sbjct: 206 AYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGAT 265
Query: 242 IAGIHELEKSGFRGILMNAVVAAAKRSREL 271
I +H LE GFR +L+NAV A+ R+REL
Sbjct: 266 IHALHVLESGGFRSLLINAVEASCIRTREL 295
|
|
| ZFIN|ZDB-GENE-040426-1675 pycr1 "pyrroline-5-carboxylate reductase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 112/266 (42%), Positives = 154/266 (57%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
+GFIGAG++A ++ KG +GV+ RI ++ ++L +G + N
Sbjct: 3 VGFIGAGQLAHALVKGFTAAGVIATHRITASSPDTDLPTVIGLRKMGAFFTTSNKETVSK 62
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
+I P + + L+VS AAGV + K L ++ + IR M
Sbjct: 63 SDVLFLAVKPHIIPFVLDEIGPDIEDRHLIVSCAAGVTISSIEKKLLQYRSAPKVIRCMT 122
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIF 185
NTP V E ATV + G A EDG+L+ +L SVG +E L DA+TGLSG PAY F
Sbjct: 123 NTPVVVREGATVYATGTHAEVEDGKLLEQLMASVGYCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 186 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245
A++ALADGGV GLPR LA+ L +Q +LGAA M+ +S +HPGQLKD+VASPGG TI +
Sbjct: 183 TAVDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLESEQHPGQLKDNVASPGGATIHAL 242
Query: 246 HELEKSGFRGILMNAVVAAAKRSREL 271
H +E GFR +L+NAV A+ R+REL
Sbjct: 243 HVMESGGFRSLLINAVEASCIRTREL 268
|
|
| FB|FBgn0038516 CG5840 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 111/264 (42%), Positives = 150/264 (56%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-DAFESIGVKVLSDNNAXXXX 71
+GF+G G MA+++AKG +G+ P+ + +VH K +F+S+GV+ + N
Sbjct: 7 IGFLGGGNMAKALAKGFLAAGLAKPNTLIASVHPADKLSLQSFQSLGVETVIKNAPVVQQ 66
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQE-WTGHSRFIRVMPNTP 130
+I+PL S KL +SVA G+ L ++ + +R IRVMPN P
Sbjct: 67 SDVVFVSVKPQVVPSVLSEIQPL-SSGKLFLSVAMGITLSTIESSLSPQARVIRVMPNLP 125
Query: 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIFLAI 188
+ V +V G AT+ D ++ KL SVG DE D +T LSG PAY+F+ I
Sbjct: 126 AVVCSGCSVFVRGSKATDADADITQKLLQSVGTCEPVDESQLDVVTALSGSGPAYVFVMI 185
Query: 189 EALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL 248
EALADG V G+PR+LA LASQTVLGA MV SG HPGQLKD V SP G+T A + +L
Sbjct: 186 EALADGAVHMGMPRDLAYRLASQTVLGAGHMVRDSGMHPGQLKDGVTSPAGSTAAALRQL 245
Query: 249 EKSGFRGILMNAVVAAAKRSRELS 272
E SGFR + AV A R R++S
Sbjct: 246 ELSGFRAAVSGAVEQATLRCRQIS 269
|
|
| ZFIN|ZDB-GENE-050522-26 zgc:110655 "zgc:110655" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 111/266 (41%), Positives = 154/266 (57%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
+GFIGAG++A ++ KG +GV+ +RI ++ + L +GV + + N
Sbjct: 48 VGFIGAGQLAHAMVKGFTAAGVIAANRITASSPDTELPTVSGLRKMGVNLTTSNKEATHR 107
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
+I P + + L+VS AAGV + K L ++ + +R M
Sbjct: 108 SDVLFLAVKPHIIPFVLDEIGPDIEDRHLIVSCAAGVTISSIEKKLLQYRESPKVMRCMT 167
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIF 185
NTP V E ATV + G A EDG+L+ +L SVG +E L DA+TGLSG PAY F
Sbjct: 168 NTPVVVREGATVYATGTHAHLEDGKLLEQLMASVGFCTEVEEDLIDAVTGLSGSGPAYAF 227
Query: 186 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245
A++ALADGGV GLPR LA+ L +Q ++GAA M+ S +HPGQLKD+V SPGG TI +
Sbjct: 228 TALDALADGGVKMGLPRRLAVRLGAQALMGAAKMLLDSEQHPGQLKDNVCSPGGATIHAL 287
Query: 246 HELEKSGFRGILMNAVVAAAKRSREL 271
H LE GFR +L+NAV A+ R+REL
Sbjct: 288 HFLESGGFRSLLINAVEASCIRTREL 313
|
|
| UNIPROTKB|P32322 PYCR1 "Pyrroline-5-carboxylate reductase 1, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 115/266 (43%), Positives = 153/266 (57%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
+GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 62
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
+I + + ++VS AAGV + K L + R IR M
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMT 122
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIF 185
NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSG PAY F
Sbjct: 123 NTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 186 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245
A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPGG TI +
Sbjct: 183 TALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHAL 242
Query: 246 HELEKSGFRGILMNAVVAAAKRSREL 271
H LE GFR +L+NAV A+ R+REL
Sbjct: 243 HVLESGGFRSLLINAVEASCIRTREL 268
|
|
| UNIPROTKB|Q5R9X6 PYCR1 "Pyrroline-5-carboxylate reductase 1, mitochondrial" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 115/266 (43%), Positives = 153/266 (57%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
+GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 62
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
+I + + ++VS AAGV + K L + R IR M
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMT 122
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIF 185
NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSG PAY F
Sbjct: 123 NTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 186 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245
A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPGG TI +
Sbjct: 183 TALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHAL 242
Query: 246 HELEKSGFRGILMNAVVAAAKRSREL 271
H LE GFR +L+NAV A+ R+REL
Sbjct: 243 HVLESGGFRSLLINAVEASCIRTREL 268
|
|
| UNIPROTKB|F1S8R2 LOC100524702 "Pyrroline-5-carboxylate reductase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 112/266 (42%), Positives = 154/266 (57%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
+GFIGAG++A ++A+G +G+L +I ++ +L A +GV + N
Sbjct: 3 VGFIGAGQLACALARGFTAAGILSAHKIIASSPEMDLPTVAALRKMGVNLTRSNKETVRH 62
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
+I + + ++VS AAGV + K LQ + + IR M
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKKLQAFQPAPKVIRCMT 122
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIF 185
NTP V E ATV + G A EDG+L+ +L SVG +E L DA+TGLSG PAY F
Sbjct: 123 NTPVVVREGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 186 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245
+A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V SPGG TI +
Sbjct: 183 MALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPGQLKDNVCSPGGATIHAL 242
Query: 246 HELEKSGFRGILMNAVVAAAKRSREL 271
H LE GFR +L+NAV A+ R+REL
Sbjct: 243 HFLESGGFRSLLINAVEASCIRTREL 268
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P54904 | P5CR1_ARATH | 1, ., 5, ., 1, ., 2 | 0.7627 | 1.0 | 0.9855 | yes | no |
| Q9CPE8 | P5CR_PASMU | 1, ., 5, ., 1, ., 2 | 0.3246 | 0.9448 | 0.9345 | yes | no |
| P43869 | P5CR_HAEIN | 1, ., 5, ., 1, ., 2 | 0.3207 | 0.9485 | 0.9520 | yes | no |
| Q9P7Y7 | P5CR_SCHPO | 1, ., 5, ., 1, ., 2 | 0.3333 | 0.9338 | 0.9007 | yes | no |
| Q5HFR9 | P5CR_STAAC | 1, ., 5, ., 1, ., 2 | 0.3045 | 0.9485 | 0.9520 | yes | no |
| Q5R9X6 | P5CR1_PONAB | 1, ., 5, ., 1, ., 2 | 0.4586 | 0.9522 | 0.8119 | yes | no |
| Q922Q4 | P5CR2_MOUSE | 1, ., 5, ., 1, ., 2 | 0.4473 | 0.9522 | 0.8093 | yes | no |
| Q7A5G8 | P5CR_STAAN | 1, ., 5, ., 1, ., 2 | 0.3045 | 0.9485 | 0.9520 | yes | no |
| Q04708 | P5CR_PEA | 1, ., 5, ., 1, ., 2 | 0.7773 | 0.9963 | 0.9926 | N/A | no |
| Q49XV0 | P5CR_STAS1 | 1, ., 5, ., 1, ., 2 | 0.3007 | 0.9485 | 0.9520 | yes | no |
| Q6G961 | P5CR_STAAS | 1, ., 5, ., 1, ., 2 | 0.3045 | 0.9485 | 0.9520 | yes | no |
| E0TY11 | P5CR1_BACPZ | 1, ., 5, ., 1, ., 2 | 0.3522 | 0.9558 | 0.8754 | yes | no |
| Q5HP48 | P5CR_STAEQ | 1, ., 5, ., 1, ., 2 | 0.3045 | 0.9485 | 0.9520 | yes | no |
| O04016 | P5CR_ACTCH | 1, ., 5, ., 1, ., 2 | 0.7843 | 0.9779 | 0.9568 | N/A | no |
| Q6GGJ5 | P5CR_STAAR | 1, ., 5, ., 1, ., 2 | 0.3045 | 0.9485 | 0.9520 | yes | no |
| Q7A0U1 | P5CR_STAAW | 1, ., 5, ., 1, ., 2 | 0.3045 | 0.9485 | 0.9520 | yes | no |
| P32263 | P5CR_YEAST | 1, ., 5, ., 1, ., 2 | 0.3215 | 0.9522 | 0.9055 | yes | no |
| Q9HH99 | P5CR_METAC | 1, ., 5, ., 1, ., 2 | 0.4398 | 0.9669 | 0.9740 | yes | no |
| Q8CP51 | P5CR_STAES | 1, ., 5, ., 1, ., 2 | 0.3045 | 0.9485 | 0.9520 | yes | no |
| P54893 | P5CR_THET2 | 1, ., 5, ., 1, ., 2 | 0.3726 | 0.9227 | 0.9616 | yes | no |
| P0CI77 | P5CR1_BACSU | 1, ., 5, ., 1, ., 2 | 0.3522 | 0.9558 | 0.8754 | yes | no |
| Q17QJ7 | P5CR2_BOVIN | 1, ., 5, ., 1, ., 2 | 0.4436 | 0.9522 | 0.8093 | yes | no |
| P0A9L9 | P5CR_SHIFL | 1, ., 5, ., 1, ., 2 | 0.3726 | 0.9558 | 0.9665 | yes | no |
| Q99TZ0 | P5CR_STAAM | 1, ., 5, ., 1, ., 2 | 0.3045 | 0.9485 | 0.9520 | yes | no |
| P22008 | P5CR_PSEAE | 1, ., 5, ., 1, ., 2 | 0.3825 | 0.9522 | 0.9487 | yes | no |
| P27771 | P5CR_TREPA | 1, ., 5, ., 1, ., 2 | 0.3030 | 0.9301 | 0.9619 | yes | no |
| P17817 | P5CR_SOYBN | 1, ., 5, ., 1, ., 2 | 0.7737 | 1.0 | 0.9927 | yes | no |
| O66553 | P5CR_AQUAE | 1, ., 5, ., 1, ., 2 | 0.3345 | 0.9154 | 0.9396 | yes | no |
| P0C1E4 | P5CR_CORGL | 1, ., 5, ., 1, ., 2 | 0.3584 | 0.9485 | 0.9555 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | LOW CONFIDENCE prediction! |
| 4th Layer | 1.5.1.2 | 0.979 |
| 3rd Layer | 1.5.1 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 272 | |||
| PLN02688 | 266 | PLN02688, PLN02688, pyrroline-5-carboxylate reduct | 1e-153 | |
| PRK11880 | 267 | PRK11880, PRK11880, pyrroline-5-carboxylate reduct | 2e-99 | |
| COG0345 | 266 | COG0345, ProC, Pyrroline-5-carboxylate reductase [ | 1e-97 | |
| TIGR00112 | 245 | TIGR00112, proC, pyrroline-5-carboxylate reductase | 2e-94 | |
| PRK12491 | 272 | PRK12491, PRK12491, pyrroline-5-carboxylate reduct | 8e-57 | |
| PTZ00431 | 260 | PTZ00431, PTZ00431, pyrroline carboxylate reductas | 2e-56 | |
| PRK07679 | 279 | PRK07679, PRK07679, pyrroline-5-carboxylate reduct | 5e-50 | |
| PRK07634 | 245 | PRK07634, PRK07634, pyrroline-5-carboxylate reduct | 2e-33 | |
| PRK06928 | 277 | PRK06928, PRK06928, pyrroline-5-carboxylate reduct | 1e-20 | |
| PRK07680 | 273 | PRK07680, PRK07680, late competence protein ComER; | 1e-19 | |
| pfam03807 | 93 | pfam03807, F420_oxidored, NADP oxidoreductase coen | 1e-15 | |
| PRK06476 | 258 | PRK06476, PRK06476, pyrroline-5-carboxylate reduct | 1e-15 | |
| pfam01210 | 157 | pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol- | 0.003 |
| >gnl|CDD|178291 PLN02688, PLN02688, pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Score = 427 bits (1099), Expect = e-153
Identities = 187/262 (71%), Positives = 216/262 (82%), Gaps = 2/262 (0%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+GFIGAGKMAE+IA+G+ SGV+PP RI TA SN RRD F+S+GVK + N VV+ S
Sbjct: 3 VGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSS 62
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSA 132
DV++ +VKPQVVKDV ++RPLLS+ KLLVSVAAG+ L DLQEW G R +RVMPNTP
Sbjct: 63 DVIILAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGRRVVRVMPNTPCL 122
Query: 133 VGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL--SGPAYIFLAIEA 190
VGEAA+VMSLG AT +D +L+ LFG+VGKIW DEKL DA+TGL SGPAYIFLAIEA
Sbjct: 123 VGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVDEKLLDAVTGLSGSGPAYIFLAIEA 182
Query: 191 LADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEK 250
LADGGVAAGLPR++AL LA+QTVLGAA MV ++GKHPGQLKD V SPGGTTIAG+HELEK
Sbjct: 183 LADGGVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMVTSPGGTTIAGVHELEK 242
Query: 251 SGFRGILMNAVVAAAKRSRELS 272
GFR LMNAVVAAAKRSRELS
Sbjct: 243 GGFRAALMNAVVAAAKRSRELS 264
|
Length = 266 |
| >gnl|CDD|237008 PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 291 bits (747), Expect = 2e-99
Identities = 125/266 (46%), Positives = 169/266 (63%), Gaps = 9/266 (3%)
Query: 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLSDNNAVVE 70
+GFIG G MA +I G+ SGV P I + ++R A E GV+ +DN +
Sbjct: 4 KIGFIGGGNMASAIIGGLLASGV-PAKDII-VSDPSPEKRAALAEEYGVRAATDNQEAAQ 61
Query: 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS-RFIRVMPNT 129
+DVVV +VKPQV+++V +++ L KL+VS+AAGV L L+ G +R MPNT
Sbjct: 62 EADVVVLAVKPQVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNT 119
Query: 130 PSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLSG--PAYIFL 186
P+ VG T ++ + ED EL+ L + GK +W DEK DA+T +SG PAY+FL
Sbjct: 120 PALVGAGMTALTANALVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFL 179
Query: 187 AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 246
IEALAD GV GLPRE A LA+QTVLGAA ++ +SG+HP +L+D+V SPGGTTIA +
Sbjct: 180 FIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDNVTSPGGTTIAALR 239
Query: 247 ELEKSGFRGILMNAVVAAAKRSRELS 272
LE+ G R ++ AV AAAKRS+EL
Sbjct: 240 VLEEKGLRAAVIEAVQAAAKRSKELG 265
|
Length = 267 |
| >gnl|CDD|223422 COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 286 bits (735), Expect = 1e-97
Identities = 130/262 (49%), Positives = 172/262 (65%), Gaps = 3/262 (1%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+GFIGAG M E+I G+ KSG LPP+ I S KR GV +DN VE +
Sbjct: 4 IGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEA 63
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSA 132
DVV +VKPQ +++V +++PL ++ KL++S+AAGV ++ L+ G R +RVMPNTP+
Sbjct: 64 DVVFLAVKPQDLEEVLSKLKPL-TKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPAL 122
Query: 133 VGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL--SGPAYIFLAIEA 190
VG T +S +EED + L +VGK+ +E L DA+T L SGPAY+FL IEA
Sbjct: 123 VGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVEESLMDAVTALSGSGPAYVFLFIEA 182
Query: 191 LADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEK 250
LAD GV GLPRE A LA+QTV GAA ++ +SG+HP +L+D V SPGGTTIAG+ LE+
Sbjct: 183 LADAGVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQVTSPGGTTIAGLRVLEE 242
Query: 251 SGFRGILMNAVVAAAKRSRELS 272
GFRG ++ AV AA KRS EL
Sbjct: 243 DGFRGAVIEAVEAAYKRSEELG 264
|
Length = 266 |
| >gnl|CDD|232829 TIGR00112, proC, pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Score = 277 bits (712), Expect = 2e-94
Identities = 115/243 (47%), Positives = 154/243 (63%), Gaps = 3/243 (1%)
Query: 31 KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQ 90
K+G L I S K + +G+ SD V+ +DVV +VKPQ +++V +
Sbjct: 3 KAGALAAYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVKPQDLEEVLSE 62
Query: 91 IRPLLSRKKLLVSVAAGVKLKDLQEWTGH-SRFIRVMPNTPSAVGEAATVMSLGGTATEE 149
++ + KLL+S+AAGV L+ L + G R +RVMPNTP+ VG T ++ +EE
Sbjct: 63 LKSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEE 122
Query: 150 DGELIGKLFGSVGKIWRADEKLFDAITGL--SGPAYIFLAIEALADGGVAAGLPRELALG 207
D L+ LF +VG++ E L DA+T L SGPAY+FL IEALAD GV GLPRELAL
Sbjct: 123 DRALVLALFKAVGEVVELPEALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALE 182
Query: 208 LASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKR 267
LA+QTV GAA ++ +SG+HP LKD V SPGGTTIAG+ LE+ G RG ++ AV AA +R
Sbjct: 183 LAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTTIAGLAVLEEKGVRGAVIEAVEAAVRR 242
Query: 268 SRE 270
SRE
Sbjct: 243 SRE 245
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs [Amino acid biosynthesis, Glutamate family]. Length = 245 |
| >gnl|CDD|105695 PRK12491, PRK12491, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 8e-57
Identities = 100/265 (37%), Positives = 162/265 (61%), Gaps = 7/265 (2%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVH-SNLKRRDAFESIGVKVLSDNNAVVE 70
+GFIG G M ++ G+ ++ PD+I C+ ++ SNLK +A + G+ + ++NN V
Sbjct: 5 IGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLK--NASDKYGITITTNNNEVAN 62
Query: 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQ-EWTGHSRFIRVMPNT 129
+D+++ S+KP + V QI+ + ++V++AAG +K + E+ + IRVMPNT
Sbjct: 63 SADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNT 122
Query: 130 PSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIFLA 187
P VGE + + TE+D + + +F G+ +EKL D +T +SG PAY+++
Sbjct: 123 PVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEVVNEKLMDVVTSISGSSPAYVYMF 182
Query: 188 IEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHE 247
IEA+AD V G+PR+ A A+Q VLG+A MV ++G HPG+LKD V SPGGTTI +
Sbjct: 183 IEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGTTIEAVAT 242
Query: 248 LEKSGFRGILMNAVVAAAKRSRELS 272
LE+ G R +++A+ ++S E+S
Sbjct: 243 LEEKGLRTAIISAMKRCTQKSMEMS 267
|
Length = 272 |
| >gnl|CDD|173621 PTZ00431, PTZ00431, pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 2e-56
Identities = 101/266 (37%), Positives = 152/266 (57%), Gaps = 11/266 (4%)
Query: 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAV 68
E+ +GFIG GKM ++A G+ S ++ + I H+ K+ F L N +
Sbjct: 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENI--YYHTPSKKNTPF-----VYLQSNEEL 54
Query: 69 VEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMP 127
+ D++V +VKP + V ++I+P L KLL+S+ G+ LK L+E G ++ +RVMP
Sbjct: 55 AKTCDIIVLAVKPDLAGKVLLEIKPYLG-SKLLISICGGLNLKTLEEMVGVEAKIVRVMP 113
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIF 185
NTPS VG+ + V D + + +F + G I EK D T +SG PAY+F
Sbjct: 114 NTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQEIKEKDMDIATAISGCGPAYVF 173
Query: 186 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245
L IE+L D GV GL R+++ L QT+LG+ MV S + QLKDDV SPGG TI G+
Sbjct: 174 LFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCSPGGITIVGL 233
Query: 246 HELEKSGFRGILMNAVVAAAKRSREL 271
+ LEK F+ +M+AV +A ++S+ +
Sbjct: 234 YTLEKHAFKYTVMDAVESACQKSKSM 259
|
Length = 260 |
| >gnl|CDD|181079 PRK07679, PRK07679, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 5e-50
Identities = 83/261 (31%), Positives = 145/261 (55%), Gaps = 4/261 (1%)
Query: 15 FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEYSD 73
F+GAG +AE+I G+ + V+ ++I + SN R ++ + GVK + ++ ++
Sbjct: 8 FLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDAN 67
Query: 74 VVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS-RFIRVMPNTPSA 132
++ ++KP+ V + + + + +L++S+ AGV ++ IR MPNT +A
Sbjct: 68 ILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAA 127
Query: 133 VGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIFLAIEA 190
+ ++AT +S AT E + LF ++G + +E+ A+T LSG PAYI+ +EA
Sbjct: 128 ILKSATAISPSKHATAEHIQTAKALFETIGLVSVVEEEDMHAVTALSGSGPAYIYYVVEA 187
Query: 191 LADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEK 250
+ GL ++A L QT++GAA M+ S KHP L+ ++ SPGGTT AGI L++
Sbjct: 188 MEKAAKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSILRKEITSPGGTTEAGIEVLQE 247
Query: 251 SGFRGILMNAVVAAAKRSREL 271
F+ L++ + A +RS L
Sbjct: 248 HRFQQALISCITQATQRSHNL 268
|
Length = 279 |
| >gnl|CDD|181063 PRK07634, PRK07634, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-33
Identities = 70/248 (28%), Positives = 127/248 (51%), Gaps = 24/248 (9%)
Query: 15 FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSD 73
FIGAG+MAE+I G+ K+ + I + SN+++ D ++ V +D V D
Sbjct: 9 FIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVD 68
Query: 74 VVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE---------WTGHSRFIR 124
+V ++ P +++ ++ PLLS +L+V+VAAG+ L+E W
Sbjct: 69 TIVLAMPPSAHEELLAELSPLLSN-QLVVTVAAGIGPSYLEERLPKGTPVAW-------- 119
Query: 125 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEK---LFDAITGLSGP 181
+MPNT + +G++ ++ ++G + E E + + +G E+ A+TG S P
Sbjct: 120 IMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQLCTEEEVHQLTAVTG-SAP 178
Query: 182 AYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTT 241
A+++ E+L + + G+ E A L Q + G+ASM+ + + P L++ V +PGG+T
Sbjct: 179 AFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASML-EQTQDPANLREQVTTPGGST 237
Query: 242 IAGIHELE 249
G+ L
Sbjct: 238 AEGLKALY 245
|
Length = 245 |
| >gnl|CDD|235888 PRK06928, PRK06928, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 1e-20
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 5/244 (2%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSDNNA-VVE 70
+GFIG G MA+ IA + ++ V P+ I S + + V L+DN A +
Sbjct: 4 IGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFT 63
Query: 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTP 130
D V P V + P+L+ + +VS+AAGV L DL E T + R++P+
Sbjct: 64 KCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLT 123
Query: 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL--SGPAYIFLAI 188
SAVG ++++ T E + + + + E+ D + L S P +I
Sbjct: 124 SAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMTIREENMDIASNLTSSSPGFIAAIF 183
Query: 189 EALADGGVA-AGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHE 247
E A+ V + L E A + + G ++ + + VA+ GG T G
Sbjct: 184 EEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLLVEEDYTFSGTIERVATKGGITAEGAEV 243
Query: 248 LEKS 251
++
Sbjct: 244 IQAQ 247
|
Length = 277 |
| >gnl|CDD|181080 PRK07680, PRK07680, late competence protein ComER; Validated | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 1e-19
Identities = 59/249 (23%), Positives = 113/249 (45%), Gaps = 21/249 (8%)
Query: 14 GFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-----NLKRRDAFESIGVKVLSDNNAV 68
GFIG G M + + +SG + P ++ + ++K R G+ V V
Sbjct: 4 GFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP----GIHVAKTIEEV 59
Query: 69 VEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPN 128
+ SD++ VKP + + ++ P L+ + LVS+ + + ++ L+ + R++P+
Sbjct: 60 ISQSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET-LVPCQVARIIPS 118
Query: 129 TPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLS------GPA 182
+ A++ + G +EED + + +LF ++ +E IT +S GPA
Sbjct: 119 ITNRALSGASLFTFGSRCSEEDQQKLERLFSNISTPLVIEED----ITRVSSDIVSCGPA 174
Query: 183 YIFLAIEALADGGVA-AGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTT 241
+ ++ D V + +E A LAS+ ++G ++ K L++ V GG T
Sbjct: 175 FFSYLLQRFIDAAVEETNISKEEATTLASEMLIGMGKLLEKGLYTLPTLQEKVCVKGGIT 234
Query: 242 IAGIHELEK 250
GI LE+
Sbjct: 235 GEGIKVLEE 243
|
Length = 273 |
| >gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme F420-dependent | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 1e-15
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 7/97 (7%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVL-SDNNAVVE 70
+G IGAG M E++A+G+A +G + A N ++ A E +GVK N VE
Sbjct: 2 IGIIGAGNMGEALARGLAAAG----HEVVIANSRNPEKAAALAEELGVKATAVSNEEAVE 57
Query: 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107
+DVV +VKP+ +V ++ LL + KL++S+ G
Sbjct: 58 EADVVFLAVKPEDAPEVLAELADLL-KGKLVISITNG 93
|
Length = 93 |
| >gnl|CDD|235812 PRK06476, PRK06476, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 1e-15
Identities = 64/255 (25%), Positives = 107/255 (41%), Gaps = 19/255 (7%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+GFIG G + E++ G+ S + I + ++ + R A V++ DN AVV+ S
Sbjct: 3 IGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRS 62
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRK-KLLVSVAAGVKLKDLQEWTGHS-RFIRVMPNTP 130
DVV +V+PQ+ ++V +R L R + ++SV A L EW GH + +R +P
Sbjct: 63 DVVFLAVRPQIAEEV---LRALRFRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPF 119
Query: 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEK----LFDAITGLSGPAYIFL 186
A + G TA + LF ++G D + L A + L + L
Sbjct: 120 VAERK-------GVTAIYPPDPFVAALFDALGTAVECDSEEEYDLLAAASALMATYFGIL 172
Query: 187 AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHP-GQLKDDVASPGGTTIAGI 245
E GL R+ A + A +S K L + ++ GG +
Sbjct: 173 --ETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKGGLNEQVL 230
Query: 246 HELEKSGFRGILMNA 260
++ + G L +A
Sbjct: 231 NDFSRQGGYAALTDA 245
|
Length = 258 |
| >gnl|CDD|201664 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.003
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 59 VKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109
++ +D ++ +D++V +V Q +++V Q++ LLS +LVS+ G++
Sbjct: 57 LRATTDLEEAIKGADIIVLAVPSQALREVLKQLKGLLSPGAILVSLTKGIE 107
|
NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain. Length = 157 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 272 | |||
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 100.0 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 100.0 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 100.0 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 100.0 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 100.0 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 100.0 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.98 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.97 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 99.95 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.95 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.95 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.95 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.94 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.94 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.94 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.94 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.93 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.93 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.92 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.92 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.92 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.91 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.91 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.91 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.91 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.91 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.91 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.91 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.9 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.89 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.89 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.88 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.88 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.88 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.87 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.87 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.87 | |
| PF14748 | 107 | P5CR_dimer: Pyrroline-5-carboxylate reductase dime | 99.86 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.86 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.84 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.83 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.83 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.83 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.82 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.82 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.81 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.81 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.8 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.8 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.8 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.79 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.78 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.77 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.76 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.76 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.76 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.75 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.75 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.75 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.73 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.73 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.72 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.72 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.72 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.71 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.71 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.71 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.7 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.68 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.68 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.65 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.64 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.64 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.63 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 99.63 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.62 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.61 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.61 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.58 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 99.56 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.52 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.52 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.51 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.51 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.51 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.51 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.5 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.48 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 99.46 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 99.45 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 99.45 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 99.43 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 99.39 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.38 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 99.36 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.36 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.32 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.22 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 99.2 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.16 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.16 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 99.15 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.15 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 99.11 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 99.11 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.1 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.09 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.07 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 99.05 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 99.04 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.03 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 99.02 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 98.99 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.99 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.92 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.9 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.89 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.88 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.86 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.81 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.77 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.76 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.75 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.74 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.74 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.73 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.7 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.69 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.69 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 98.69 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.68 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 98.66 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.66 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.65 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.63 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.61 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.57 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.56 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 98.54 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.53 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.53 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 98.52 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.48 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.48 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 98.47 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.46 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.43 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 98.43 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 98.4 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.39 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 98.37 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.37 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.37 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 98.36 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 98.36 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 98.36 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 98.35 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 98.35 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 98.34 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 98.34 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 98.33 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 98.33 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 98.31 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 98.31 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 98.3 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 98.3 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 98.3 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 98.29 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.29 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 98.28 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 98.28 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 98.28 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 98.28 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.27 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.27 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.25 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 98.25 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.23 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 98.21 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.2 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 98.2 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 98.2 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 98.16 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.15 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 98.15 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 98.15 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 98.14 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 98.12 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.1 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 98.09 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 98.08 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 98.08 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 98.05 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 98.04 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 98.04 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 98.04 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 98.04 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.02 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 98.02 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 98.01 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.99 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.99 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 97.97 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.95 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.92 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.92 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.9 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.88 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.87 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.85 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.85 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.83 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.82 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.8 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.79 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.78 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 97.76 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 97.74 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.74 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.72 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.72 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.72 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.71 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 97.7 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 97.69 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.69 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 97.68 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.68 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.68 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.67 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.66 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 97.65 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.64 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 97.63 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.63 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.63 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 97.63 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 97.63 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.58 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.58 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.55 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.54 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.54 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.53 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.52 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.52 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 97.52 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.5 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.5 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.48 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.47 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 97.46 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.46 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.45 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 97.44 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 97.43 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 97.42 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 97.41 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 97.41 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.4 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.35 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 97.34 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 97.32 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 97.31 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 97.29 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 97.28 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 97.27 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.27 | |
| PLN00106 | 323 | malate dehydrogenase | 97.26 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.25 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.25 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.25 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 97.22 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.22 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.21 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 97.21 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 97.2 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.19 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 97.18 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.17 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 97.17 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.17 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.16 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.15 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.15 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 97.15 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.12 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.12 | |
| PF10728 | 132 | DUF2520: Domain of unknown function (DUF2520); Int | 97.09 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 97.08 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 97.08 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 97.06 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 97.05 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 97.01 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.0 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 97.0 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.99 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.99 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 96.96 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 96.95 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.93 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.93 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.91 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.89 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.88 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.88 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.86 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.84 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.84 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 96.84 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.84 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.83 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.83 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.81 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 96.79 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.78 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.76 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 96.75 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 96.75 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 96.7 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.69 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.68 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 96.67 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.66 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 96.63 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 96.63 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.63 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.62 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.62 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.58 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 96.57 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.57 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.53 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.51 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.49 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.46 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.35 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 96.33 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.31 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 96.26 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 96.26 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.25 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 96.24 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.24 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 96.2 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 96.19 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.18 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 96.17 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.17 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 96.15 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 96.15 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 96.15 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 96.14 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.13 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 96.13 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 96.12 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 96.11 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 96.1 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.1 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.09 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 96.08 | |
| PRK07411 | 390 | hypothetical protein; Validated | 96.08 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 96.06 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.04 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 96.03 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 96.02 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 96.01 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.99 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.99 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 95.98 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.96 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.95 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 95.95 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.95 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.87 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.86 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 95.85 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.84 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 95.83 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 95.83 | |
| PLN02477 | 410 | glutamate dehydrogenase | 95.83 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.83 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 95.83 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 95.81 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.8 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 95.8 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 95.78 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 95.77 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 95.77 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 95.77 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 95.76 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.71 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 95.7 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 95.69 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 95.63 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 95.61 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.61 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 95.6 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 95.6 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 95.6 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 95.59 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.59 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 95.58 | |
| PRK05717 | 255 | oxidoreductase; Validated | 95.58 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 95.57 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.54 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 95.53 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 95.52 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 95.52 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 95.52 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 95.52 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 95.48 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 95.44 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.43 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 95.42 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.42 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.4 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 95.39 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 95.38 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 95.37 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 95.36 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 95.35 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 95.35 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 95.35 | |
| PRK08955 | 334 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 95.32 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 95.31 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.31 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 95.3 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 95.29 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 95.25 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 95.22 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.21 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 95.21 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 95.18 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 95.18 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.17 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 95.16 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 95.16 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 95.11 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 95.1 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 95.09 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 95.09 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 95.08 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 95.08 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.08 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 95.06 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 95.06 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 95.06 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 95.05 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 95.05 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 95.0 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 94.96 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 94.95 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 94.92 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 94.92 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 94.91 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.9 | |
| smart00846 | 149 | Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, | 94.9 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 94.89 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 94.89 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 94.88 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 94.87 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 94.87 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 94.86 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.84 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 94.83 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 94.82 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.81 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 94.79 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 94.78 | |
| COG1832 | 140 | Predicted CoA-binding protein [General function pr | 94.77 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 94.75 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 94.74 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 94.74 | |
| COG0057 | 335 | GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt | 94.74 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.73 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 94.72 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 94.72 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 94.72 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 94.71 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 94.66 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 94.66 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 94.63 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.62 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 94.61 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 94.61 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.6 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 94.58 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 94.58 | |
| COG0773 | 459 | MurC UDP-N-acetylmuramate-alanine ligase [Cell env | 94.57 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 94.57 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 94.57 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 94.56 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 94.55 |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-53 Score=348.81 Aligned_cols=261 Identities=49% Similarity=0.801 Sum_probs=246.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
++||||||+|+||++|+.+|+++|.+++.+|++. +|++++.+.+.+ +|+..+.++.+++.++|+||+||+|+++++++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~-~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~~~~vl 79 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVT-NRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQDLEEVL 79 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEe-CCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHhHHHHH
Confidence 4789999999999999999999995577799999 999999875655 77776677788899999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEcC
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 168 (272)
.++.+ +.++++|||+.+|++.+.+++++++.+++|+|||+|..++.|.+.++.+...++++.+.+.++|+.+|++++++
T Consensus 80 ~~l~~-~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v~ 158 (266)
T COG0345 80 SKLKP-LTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVE 158 (266)
T ss_pred HHhhc-ccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCeEEec
Confidence 99998 77999999999999999999999878999999999999999999999998899999999999999999998888
Q ss_pred cccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHHH
Q 024121 169 EKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 246 (272)
Q Consensus 169 e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l~ 246 (272)
|+.+|.+++++ +|+|++.++|+|.+++.+.|++++++++++.+++.|+..++.+++.+|..|+++|+||||+|++||+
T Consensus 159 E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~VtSPGGtTiagl~ 238 (266)
T COG0345 159 ESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQVTSPGGTTIAGLR 238 (266)
T ss_pred hHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCcCCCchHHHHHH
Confidence 99999999999 9999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 247 ELEKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
.|++.+|+..+.++++++++|++||+
T Consensus 239 ~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 239 VLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999985
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=353.97 Aligned_cols=262 Identities=35% Similarity=0.618 Sum_probs=247.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
.+||+|||+|+||.+|+++|.++|+..+.+|++| +|++++++.+.+ .|+..+.++.+++++||+||+||||+++.+++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~-~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl 80 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICS-DLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVI 80 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEE-CCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHH
Confidence 4689999999999999999999987566689999 999999988876 78877778888899999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEc
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRA 167 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 167 (272)
+++.++++++++|||+++|++++.++++++ ..+++|+|||.|..+++|.+.++++++.++++.+.++.+|+.+|.++++
T Consensus 81 ~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~~ 160 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEVV 160 (272)
T ss_pred HHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCEEEE
Confidence 999988888899999999999999999987 4589999999999999999999998888999999999999999999888
Q ss_pred CcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHH
Q 024121 168 DEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245 (272)
Q Consensus 168 ~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l 245 (272)
+|+++|.+++++ +|+|++.+++++.+++.+.|++++++.+++.+++.|+..++.+++.+|..++++++||||+|++|+
T Consensus 161 ~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~V~sPGGtT~~gl 240 (272)
T PRK12491 161 NEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGTTIEAV 240 (272)
T ss_pred cHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCchHHHHHH
Confidence 999999999998 999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 246 HELEKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
+.|++++|+..+.++++++++|++||+
T Consensus 241 ~~le~~~~~~~~~~av~aa~~r~~el~ 267 (272)
T PRK12491 241 ATLEEKGLRTAIISAMKRCTQKSMEMS 267 (272)
T ss_pred HHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999974
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=321.35 Aligned_cols=257 Identities=39% Similarity=0.643 Sum_probs=235.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
|+.|||+|||+|+||++|+.+|.+++..++.+++++ +|++++. +.....++.++++++|+||+|+||+++.++
T Consensus 1 ~~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~-~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp~~~~~v 73 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYH-TPSKKNT------PFVYLQSNEELAKTCDIIVLAVKPDLAGKV 73 (260)
T ss_pred CCCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEE-CCChhcC------CeEEeCChHHHHHhCCEEEEEeCHHHHHHH
Confidence 456899999999999999999999886555579999 9987542 444556777888899999999999999999
Q ss_pred HHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 024121 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR 166 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~ 166 (272)
+.++.+++. +++|||+++|++.+.+++.++ ..+++|+|||+|..++.|.+.+++.++.+++..+.++.+|+.+|.+++
T Consensus 74 l~~i~~~l~-~~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~~~ 152 (260)
T PTZ00431 74 LLEIKPYLG-SKLLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQE 152 (260)
T ss_pred HHHHHhhcc-CCEEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcEEE
Confidence 999998875 468899999999999999887 346899999999999999999998888888999999999999999988
Q ss_pred cCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHH
Q 024121 167 ADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 244 (272)
Q Consensus 167 ~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~ 244 (272)
++|+++|.+++++ +|+|++.+++++.+++.+.|++++++++++.+++.|+..++.+++.+|..++++++||||+|++|
T Consensus 153 v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~spgG~T~~g 232 (260)
T PTZ00431 153 IKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCSPGGITIVG 232 (260)
T ss_pred EChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChHHHHH
Confidence 8999999999998 89999999999999999999999999999999999999999888899999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 245 IHELEKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 245 l~~l~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
++.|+++||+..+.++++++++|++||+
T Consensus 233 l~~le~~g~~~~~~~a~~aa~~r~~~l~ 260 (260)
T PTZ00431 233 LYTLEKHAFKYTVMDAVESACQKSKSMH 260 (260)
T ss_pred HHHHHHCChHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999985
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=319.31 Aligned_cols=262 Identities=72% Similarity=1.090 Sum_probs=242.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQ 90 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~~ 90 (272)
|||+|||+|+||++|+++|.++|++++.+|++|.+|++++.+.+.+.|+.+..++.++++++|+||+||||+++++++.+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~ 80 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTE 80 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHH
Confidence 78999999999999999999999766667777658999998888888998888888889999999999999999999999
Q ss_pred hchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEcCcc
Q 024121 91 IRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 91 l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~ 170 (272)
+.+.++++++|||++++++.+.+++.++..+++|.||+.|...+.+.+.++.+...+++.++.++++|+.+|..++++|+
T Consensus 81 l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~~~~~~e~ 160 (266)
T PLN02688 81 LRPLLSKDKLLVSVAAGITLADLQEWAGGRRVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVDEK 160 (266)
T ss_pred HHhhcCCCCEEEEecCCCcHHHHHHHcCCCCEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHH
Confidence 98888889999999999999999987774479999999999999999999888778899999999999999997778999
Q ss_pred cchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHHHHH
Q 024121 171 LFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL 248 (272)
Q Consensus 171 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l~~l 248 (272)
.+|.+++++ +|+|++.+++++.+++.+.|++++++++++.+++.|+..++.+++.+|..+++++++|+|+|+++++.|
T Consensus 161 ~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l~~~v~spgG~t~~~l~~l 240 (266)
T PLN02688 161 LLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMVTSPGGTTIAGVHEL 240 (266)
T ss_pred HcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCchHHHHHHHHH
Confidence 999999987 899999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 249 EKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
+++||+..+.++++++++|++|++
T Consensus 241 ~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 241 EKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred HHCChHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999975
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-47 Score=320.95 Aligned_cols=260 Identities=22% Similarity=0.328 Sum_probs=236.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHH-c-CceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-I-GVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~-~-g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
|+||+|||+|+||.+++.+|.++|.+++.+|.+| +|++ ++.+.+.. . ++.+..+..++++++|+||+|+||+++.+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~-~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~ 79 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILY-SSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLP 79 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEE-eCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHH
Confidence 3689999999999999999999983334489999 7754 44555544 3 35556777788899999999999999999
Q ss_pred HHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR 166 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~ 166 (272)
++.++.++++++++|||+++|++.+.+++.++..+++|.|||.|..++.|.+.++.+++.++++.+.++.+|+.+|+.++
T Consensus 80 vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~ 159 (277)
T PRK06928 80 LLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMT 159 (277)
T ss_pred HHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 99999988888889999999999999999988668999999999999999999998888899999999999999999988
Q ss_pred cCcccchhHHHch--HHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHH
Q 024121 167 ADEKLFDAITGLS--GPAYIFLAIEALADGGVAA-GLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIA 243 (272)
Q Consensus 167 ~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~-Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~ 243 (272)
++|+++|.+++++ +|+|++.+++++.+++.+. |++++++++++.+++.|+.+++.+++.+|..++++++||||+|++
T Consensus 160 v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~~G~a~l~~~~~~~p~~l~~~v~spgGtT~~ 239 (277)
T PRK06928 160 IREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLLVEEDYTFSGTIERVATKGGITAE 239 (277)
T ss_pred EchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHhCCCCChHHHH
Confidence 8999999999998 9999999999999999998 799999999999999999999988889999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 244 GIHELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 244 ~l~~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
||+.|++ +|++.+.++++++.+|++++
T Consensus 240 gl~~le~-~~~~~~~~~~~~a~~r~~~~ 266 (277)
T PRK06928 240 GAEVIQA-QLPQFFDELLDRTQKKYASS 266 (277)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999997 99999999999999999986
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=319.15 Aligned_cols=264 Identities=31% Similarity=0.517 Sum_probs=241.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
|+.|||+|||+|+||.+|+++|.++|...+.+|++| +|++ ++.+.+.. .|+....++.++++++|+||+||||+++.
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~-~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~ 79 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVS-NRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVA 79 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEE-CCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHH
Confidence 466899999999999999999999983344589999 9976 46677766 58888888888889999999999999999
Q ss_pred HHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCe
Q 024121 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI 164 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~ 164 (272)
+++.++.+.++++++|||+++|++.+.++++++ +.+++|.|||.|...+.+.+++++++..+++..+.++++|+.+|..
T Consensus 80 ~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~~ 159 (279)
T PRK07679 80 EALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLV 159 (279)
T ss_pred HHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCcE
Confidence 999999888888999999999999999998886 4689999999999999999999888878889999999999999998
Q ss_pred EEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHH
Q 024121 165 WRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 242 (272)
Q Consensus 165 ~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~ 242 (272)
++++|+.++.+++++ +|+|++.+++++.+++++.|+|++++++++.+++.|+..++.+++.+|..+.+++++|+|+|+
T Consensus 160 ~~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~l~~~v~spgg~t~ 239 (279)
T PRK07679 160 SVVEEEDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSILRKEITSPGGTTE 239 (279)
T ss_pred EEeCHHHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCchHHH
Confidence 888899888888887 999999999999999999999999999999999999999988778899999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 243 AGIHELEKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 243 ~~l~~l~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
++|+.|++++|+..+.++++++++|++||+
T Consensus 240 ~gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 240 AGIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999974
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=303.73 Aligned_cols=259 Identities=47% Similarity=0.746 Sum_probs=237.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
+|||+|||+|+||++++..|.++|+ .+.+|.+| +|++++.+.+.+ .|+.+..+..+++.++|+||+|+|++++.+++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~-~~~~v~v~-~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~~~~v~ 79 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGV-PAKDIIVS-DPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQVMEEVL 79 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCC-CcceEEEE-cCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHHHHHHH
Confidence 5789999999999999999999983 23389999 999999888877 48887778888889999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEc
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRA 167 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 167 (272)
+++.+++ +++|||+++|++.+.+++.++ +.+++++||++|...+.+.+.++++...+++..+.++.+|+.+|..+++
T Consensus 80 ~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~~~~~ 157 (267)
T PRK11880 80 SELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANALVSAEDRELVENLLSAFGKVVWV 157 (267)
T ss_pred HHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCeEEEE
Confidence 9998876 579999999999999998887 5789999999999999999988888888999999999999999987555
Q ss_pred -CcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHH
Q 024121 168 -DEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 244 (272)
Q Consensus 168 -~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~ 244 (272)
+|+.+|.+++++ +|+|++.+++++.+++.+.|++++++.+++.+++.|+.+++.+.+.+|..+++++++|||+|+++
T Consensus 158 ~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~tpgG~t~~g 237 (267)
T PRK11880 158 DDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDNVTSPGGTTIAA 237 (267)
T ss_pred CChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCcHHHHHH
Confidence 588999999887 89999999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 245 IHELEKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 245 l~~l~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
++.|+++|++..+.++++++++|++||+
T Consensus 238 l~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 238 LRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999985
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-43 Score=296.72 Aligned_cols=257 Identities=21% Similarity=0.401 Sum_probs=234.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c-CceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-GVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~-g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
|+|+|||+|+||++++.+|.++|++.+.+|.+| +|++++.+.+.+ . |+....++.+++.++|+||+||||+++.+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~-~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTIT-NRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEE-CCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHH
Confidence 589999999999999999999985455589999 999998888776 3 7777778888889999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEcC
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 168 (272)
+++.++++++++|||+++|++.+.+++.++ .+++++||+.+...+.|.+.++.++..+++..+.++++|+.+|..++++
T Consensus 80 ~~l~~~l~~~~~iis~~ag~~~~~L~~~~~-~~~~r~~p~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~~~~i~ 158 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSPISVEQLETLVP-CQVARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFSNISTPLVIE 158 (273)
T ss_pred HHHHhhcCCCCEEEEECCCCCHHHHHHHcC-CCEEEECCChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCCEEEEC
Confidence 999998888999999999999999998887 5789999999987888988877777778888899999999999888888
Q ss_pred cccchhHHHch--HHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHH
Q 024121 169 EKLFDAITGLS--GPAYIFLAIEALADGGVA-AGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245 (272)
Q Consensus 169 e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~-~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l 245 (272)
|+.++.+++++ +|+|++.+++++.+++.+ .|++++++++++.+++.|+.+++.+++.+|..++++++||||+|++|+
T Consensus 159 e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~l~~~v~spgG~T~~gl 238 (273)
T PRK07680 159 EDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASEMLIGMGKLLEKGLYTLPTLQEKVCVKGGITGEGI 238 (273)
T ss_pred hHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChhHHHHH
Confidence 98899988887 899999999999998887 899999999999999999999998888899999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhh
Q 024121 246 HELEKSGFRGILMNAVVAAAKRSRE 270 (272)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~~~r~~~ 270 (272)
+.|++ +|++.|.++++++.+|.++
T Consensus 239 ~~le~-~~~~~~~~~~~~~~~~~~~ 262 (273)
T PRK07680 239 KVLEE-EVGDMFHRLFQRTHEKFDE 262 (273)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999 7999999999999999765
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=289.59 Aligned_cols=239 Identities=48% Similarity=0.736 Sum_probs=223.0
Q ss_pred hCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 31 KSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 31 ~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
+.|.+++.+|.+| +|++++++++.+ .|+.+..++.++++++|+||+||||+++.++++++.+.+.++++|||+++|++
T Consensus 3 ~~~~~~~~~I~v~-~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~ 81 (245)
T TIGR00112 3 KAGALAAYDIIVI-NRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVT 81 (245)
T ss_pred CCCCCCCCeEEEE-cCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCC
Confidence 3454566799999 999999888866 68888888889899999999999999999999999887778899999999999
Q ss_pred HHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEcCcccchhHHHch--HHHHHHH
Q 024121 110 LKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLS--GPAYIFL 186 (272)
Q Consensus 110 ~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~~~~--~~~~~~~ 186 (272)
.+.++++++ +.+++|+|||.|..+++|.+.+++++..+++..+.++++|+.+|.+++++|++++.+++++ +|+|++.
T Consensus 82 ~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsgsgPA~~~~ 161 (245)
T TIGR00112 82 LEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPAYVFL 161 (245)
T ss_pred HHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhccCcHHHHHH
Confidence 999999987 3689999999999999999999998888899999999999999999888899999999998 9999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 024121 187 AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAK 266 (272)
Q Consensus 187 ~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l~~l~~~~~~~~~~~~~~~~~~ 266 (272)
+++++.+++.+.|++++++.+++.+++.|+.+++.+++.+|+.++++++||||+|++|++.|+++||++.+.++++++++
T Consensus 162 ~~~al~~~~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGtT~~gl~~Le~~~~~~~~~~a~~aa~~ 241 (245)
T TIGR00112 162 FIEALADAGVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTTIAGLAVLEEKGVRGAVIEAVEAAVR 241 (245)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHHHHHHHHHHHHCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 024121 267 RSRE 270 (272)
Q Consensus 267 r~~~ 270 (272)
|++|
T Consensus 242 r~~e 245 (245)
T TIGR00112 242 RSRE 245 (245)
T ss_pred HhcC
Confidence 9976
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=285.42 Aligned_cols=248 Identities=23% Similarity=0.347 Sum_probs=221.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c-CceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-GVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~-g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
|||||||+|+||++|+++|.+.|+ ....+.+| +|++++.+++.+ . ++.++.++.++++++|+||+|+||+++.+++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~-~~~~i~v~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl 78 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPA-DVSEIIVS-PRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVL 78 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-ChheEEEE-CCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHH
Confidence 589999999999999999999986 44467899 999999888877 3 5777788888889999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeE-E
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIW-R 166 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~-~ 166 (272)
.++. +.++++|||++++++.+.+++.++ +.++++.||++|...+.|.+.++++ .+.++++|+.+|..+ .
T Consensus 79 ~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~-------~~~~~~l~~~lG~~~~~ 149 (258)
T PRK06476 79 RALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP-------DPFVAALFDALGTAVEC 149 (258)
T ss_pred HHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC-------HHHHHHHHHhcCCcEEE
Confidence 8873 468899999999999999999887 4689999999999988888887653 258999999999774 4
Q ss_pred cCcccchhHHHch-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHhcCCCcchHHHH
Q 024121 167 ADEKLFDAITGLS-GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASM-VTKSGKHPGQLKDDVASPGGTTIAG 244 (272)
Q Consensus 167 ~~e~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~-~~~~~~~~~~l~~~~~~~~g~t~~~ 244 (272)
.+|+.++.+++++ +++|++.+++.+.+++++.|+|++++++++.+++.|+.++ +.+++.+|..|+++++||||+|++|
T Consensus 150 ~~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v~spgGtT~~g 229 (258)
T PRK06476 150 DSEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKGGLNEQV 229 (258)
T ss_pred CChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCCCchHHHH
Confidence 5688899998887 7888888999999999999999999999999999999999 5677789999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHh
Q 024121 245 IHELEKSGFRGILMNAVVAAAKRSR 269 (272)
Q Consensus 245 l~~l~~~~~~~~~~~~~~~~~~r~~ 269 (272)
|+.|+++||+..+.++++++++|++
T Consensus 230 l~~le~~~~~~~~~~a~~aa~~r~~ 254 (258)
T PRK06476 230 LNDFSRQGGYAALTDALDRVLRRIN 254 (258)
T ss_pred HHHHHHCChHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999986
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=272.95 Aligned_cols=261 Identities=55% Similarity=0.824 Sum_probs=242.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-HHHcCceeecCchhhhccCCEEEEeeCcccHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-FESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~ 89 (272)
|++||||.|+|..++++++..+|.+.+++++.+ ..+...... +...|+..+.++.++++.+|++|++++|+.+.+++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s-~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls 79 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWAS-VQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVKPQVIESVLS 79 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeee-cCchhhhhhhhhcCCceeeechHHHHhhccceeEeecchhHHHHhh
Confidence 689999999999999999999999888899988 664433333 566898887777999999999999999999999999
Q ss_pred HhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEcC
Q 024121 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168 (272)
Q Consensus 90 ~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 168 (272)
++.+.+..+++++|+..|++++.++..++ ..+++|+|||.|..+++|..++..+.+...++.+.++++++.+|....++
T Consensus 80 ~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~evp 159 (267)
T KOG3124|consen 80 EIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEEVP 159 (267)
T ss_pred cCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCcceeCc
Confidence 99887778999999999999999998887 56899999999999999999888888888889999999999999999999
Q ss_pred cccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHHH
Q 024121 169 EKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 246 (272)
Q Consensus 169 e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l~ 246 (272)
|..+|.+|+++ +|+|.+..+|+|.+.+.+.|++++.++++..+++.|+.+|++.++.+|..|+|+++||+|+|+.++.
T Consensus 160 E~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~Lkd~V~SPgG~TI~glh 239 (267)
T KOG3124|consen 160 EKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQLKDDVCSPGGTTIYGLH 239 (267)
T ss_pred HHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHHhCCCCCCCcchHHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 247 ELEKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
.||+++|+..+.++++++..|++||+
T Consensus 240 ~LE~ggfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124|consen 240 ALEKGGFRSGLINAVEAATKRARELG 265 (267)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999985
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=272.58 Aligned_cols=240 Identities=27% Similarity=0.467 Sum_probs=214.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~ 84 (272)
||..+||+|||+|+||.+++..|.++|+....+++++ +| ++++.+.+.+ .++..+.+.+++++++|+||+|+|++.+
T Consensus 1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~~ 79 (245)
T PRK07634 1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVS-NRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAH 79 (245)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEE-CCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHHH
Confidence 4567899999999999999999998874223347788 77 5778877776 6777777888889999999999999999
Q ss_pred HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK 163 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~ 163 (272)
++++.++.++++ +++|||+++|++.+.+++.++ +.+++|.|||.+..++.|.+.++...+.+++..+.++++|+.+|.
T Consensus 80 ~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~ 158 (245)
T PRK07634 80 EELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGT 158 (245)
T ss_pred HHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCC
Confidence 999999988774 689999999999999999887 357899999999999999988887777889999999999999999
Q ss_pred eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchH
Q 024121 164 IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTT 241 (272)
Q Consensus 164 ~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t 241 (272)
.++++|++++.+++++ +|+|++.+++++.+++.+.|++++++++++.+++.|+..++.+ +.+|+.++++++||||+|
T Consensus 159 ~~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~-~~~~~~l~~~v~spgG~T 237 (245)
T PRK07634 159 SQLCTEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASMLEQ-TQDPANLREQVTTPGGST 237 (245)
T ss_pred EEEECHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHhCCCCChHH
Confidence 8778899999999887 9999999999999999999999999999999999999999875 578999999999999999
Q ss_pred HHHHHHHH
Q 024121 242 IAGIHELE 249 (272)
Q Consensus 242 ~~~l~~l~ 249 (272)
++|++.|+
T Consensus 238 ~~gl~~l~ 245 (245)
T PRK07634 238 AEGLKALY 245 (245)
T ss_pred HHHHHHhC
Confidence 99999885
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-30 Score=222.10 Aligned_cols=218 Identities=17% Similarity=0.210 Sum_probs=185.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v 87 (272)
+.+||+|||+|+||.+++++|.++|+ +|.++.+++.++.+++.+.|+.+. ++.+++++||+|++++||+ +...+
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG~----~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v 76 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSGL----NVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVY 76 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCCC----eEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHH
Confidence 46899999999999999999999998 887652555556666667788764 5778889999999999999 77777
Q ss_pred HHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhh-h------cCCceEEE-eCCCCCHHHHHHHHHHh
Q 024121 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSA-V------GEAATVMS-LGGTATEEDGELIGKLF 158 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~-~------~~g~~~~~-~~~~~~~~~~~~v~~ll 158 (272)
++++.+.++++ .+|+++.|+++..++..++ +.+++|+|||.|.. + +.|.+.++ .+.+.+.+..+.+..+|
T Consensus 77 ~~ei~~~l~~g-~iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~ 155 (314)
T TIGR00465 77 EAEIQPLLKEG-KTLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYA 155 (314)
T ss_pred HHHHHhhCCCC-cEEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHH
Confidence 77788888777 4899999999999988777 56899999999998 4 99998885 77778889999999999
Q ss_pred hhcCCe-------E---EcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024121 159 GSVGKI-------W---RADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKH 226 (272)
Q Consensus 159 ~~~G~~-------~---~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~ 226 (272)
+.+|.. . ++.|+.++..++++ +|+|++.+++++ .+.|++++.|+.++.+++.++.+++.+++.
T Consensus 156 ~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal----v~~G~~~e~A~~~~~~~~~g~~~l~~e~g~- 230 (314)
T TIGR00465 156 KAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL----VEAGYQPELAYFETVHELKLIVDLIYEGGI- 230 (314)
T ss_pred HHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHHHHhcH-
Confidence 999966 3 56788999999999 899999888776 589999999999999999999999987665
Q ss_pred HHHHHHhcCCCc
Q 024121 227 PGQLKDDVASPG 238 (272)
Q Consensus 227 ~~~l~~~~~~~~ 238 (272)
..+++.+++..
T Consensus 231 -~~l~~~Vssta 241 (314)
T TIGR00465 231 -TGMRDRISNTA 241 (314)
T ss_pred -HHHHHHcCCHH
Confidence 68999998753
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=210.88 Aligned_cols=247 Identities=18% Similarity=0.208 Sum_probs=185.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCceeecCchhhhccCCEEEEeeCc-ccHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDVA 88 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~~~v~ 88 (272)
+||+|||+|.||.+||.+|.++|| +|++| ||++++ .+.+++.|+..+.++.|+++.+|+||+||++ +++++|+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~----~v~v~-~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~ 75 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH----EVTVY-NRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVL 75 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC----EEEEE-eCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHH
Confidence 589999999999999999999999 99999 999999 5556668999999999999999999999975 4789999
Q ss_pred H---HhchhcCCCCEEEEEcCCCCHHH---HHHHhC--CCCEEEE--ccCchhhhcCCc-eEEEeCCCCCHHHHHHHHHH
Q 024121 89 M---QIRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRV--MPNTPSAVGEAA-TVMSLGGTATEEDGELIGKL 157 (272)
Q Consensus 89 ~---~l~~~l~~~~~iis~~~~~~~~~---l~~~~~--~~~~~~~--~p~~~~~~~~g~-~~~~~~~~~~~~~~~~v~~l 157 (272)
. .+.+.+++++++|++ ++++++. +.+.+. +..++.. ..+.+. ...|. ++++.| +++.+++++|+
T Consensus 76 ~g~~g~~~~~~~G~i~IDm-STisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~-A~~GtLtimvGG---~~~~f~r~~pv 150 (286)
T COG2084 76 FGENGLLEGLKPGAIVIDM-STISPETARELAAALAAKGLEFLDAPVSGGVPG-AAAGTLTIMVGG---DAEAFERAKPV 150 (286)
T ss_pred hCccchhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHhcCCcEEecCccCCchh-hhhCceEEEeCC---CHHHHHHHHHH
Confidence 4 577778899999987 4566543 333332 2333321 112222 23444 445544 79999999999
Q ss_pred hhhcCC-eEEcCcccchhHHHchHHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Q 024121 158 FGSVGK-IWRADEKLFDAITGLSGPAYIFLAIEALAD---GGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDD 233 (272)
Q Consensus 158 l~~~G~-~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 233 (272)
|+.+|+ .+++++......++++.+.++...+.++.| .+++.|+|++.+++++..+..+++.+-. ..+.+.+.
T Consensus 151 l~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~----~~~~m~~~ 226 (286)
T COG2084 151 LEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILEN----YGPRMLEG 226 (286)
T ss_pred HHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHh----hcchhhcC
Confidence 999996 589999999999998844444444444444 4689999999999999998887776543 22456677
Q ss_pred cCCCcchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhhc
Q 024121 234 VASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 234 ~~~~~g~t~~~l~~l-------~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
.++|++.....++.| ++.++.-.+.....+.|+.....
T Consensus 227 ~~~p~F~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~ 271 (286)
T COG2084 227 DFSPGFAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAA 271 (286)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhc
Confidence 789998887777765 33467667777777777776543
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=190.40 Aligned_cols=249 Identities=19% Similarity=0.183 Sum_probs=184.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~~~v 87 (272)
+.++|||||+|+||++|+.+|+++|| .|++| ||+.++.+.+++.|.++.+++.|+++++|+||.|||. .+++++
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~----kVtV~-dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v 108 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGY----KVTVY-DRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDV 108 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCC----EEEEE-eCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHH
Confidence 46799999999999999999999999 99999 9999999999999999999999999999999999974 578888
Q ss_pred HHH---hchhcCCCCEE-EEEcCCCCHH---HHHHHhC--CCCEEEEc--cCchhhhcCCceEEEeCCCCCHHHHHHHHH
Q 024121 88 AMQ---IRPLLSRKKLL-VSVAAGVKLK---DLQEWTG--HSRFIRVM--PNTPSAVGEAATVMSLGGTATEEDGELIGK 156 (272)
Q Consensus 88 ~~~---l~~~l~~~~~i-is~~~~~~~~---~l~~~~~--~~~~~~~~--p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ 156 (272)
+.. +...+++++.. |++ ++++++ ++++.+. +++++... .+.. ...+|...++.| .+++.++++.+
T Consensus 109 ~~g~~Gvl~g~~~g~~~~vDm-STidp~~s~ei~~~i~~~~~~~vDAPVSGg~~-~A~~G~Ltimag--Gde~~~~~~~~ 184 (327)
T KOG0409|consen 109 LLGKSGVLSGIRPGKKATVDM-STIDPDTSLEIAKAISNKGGRFVDAPVSGGVK-GAEEGTLTIMAG--GDEALFEAASP 184 (327)
T ss_pred hcCCCcceeeccCCCceEEec-cccCHHHHHHHHHHHHhCCCeEEeccccCCch-hhhcCeEEEEec--CcHHHHHHHHH
Confidence 854 44445677766 665 556554 4444433 34455321 1111 124566555555 48999999999
Q ss_pred HhhhcCC-eEEcCcccchhHHHchHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 024121 157 LFGSVGK-IWRADEKLFDAITGLSGP----AYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 231 (272)
Q Consensus 157 ll~~~G~-~~~~~e~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~ 231 (272)
+|+.+|+ .++++...-....+++.+ ..+..+.|++. .+.+.|+|.....+++..+-.+++.+.. ..+.+.
T Consensus 185 ~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~-la~r~GLd~~~l~eiln~G~~~S~~~~~----~~p~m~ 259 (327)
T KOG0409|consen 185 VFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALA-LADRLGLDAKKLLEILNTGRCWSSMFYN----PVPGML 259 (327)
T ss_pred HHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCcccHHHhC----cCchhh
Confidence 9999995 588999888888888722 23344566665 5789999999999999986666654432 345666
Q ss_pred HhcCCCcchHHHHHHHHH-------hCCHHHHHHHHHHHHHHHHhhc
Q 024121 232 DDVASPGGTTIAGIHELE-------KSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 232 ~~~~~~~g~t~~~l~~l~-------~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
+.++.|++.+....+.|. +.+....+....++.|++.++.
T Consensus 260 k~dy~p~f~~~~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~ 306 (327)
T KOG0409|consen 260 KGDYNPGFALKLMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKAL 306 (327)
T ss_pred cCCCCCcchHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhc
Confidence 777899998887766652 2244555666677777776653
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.5e-26 Score=191.97 Aligned_cols=246 Identities=17% Similarity=0.233 Sum_probs=182.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-eecCchhhhccCCEEEEeeCcccHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDivil~v~~~~~~~v~~ 89 (272)
|||+|||+|+||++|+.+|.++|+ ..+|++| +|++++.+.+.+.|+. ...+..++. ++|+||+|||++.+.+++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~--~~~v~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~ 76 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGL--ISKVYGY-DHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILP 76 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC--CCEEEEE-cCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHH
Confidence 589999999999999999999985 2268899 9999988888777753 344556654 5999999999999999999
Q ss_pred HhchhcCCCCEEEEEcCCCCHHHHHHHhC---CCCEEEEccCc------hhhh----cCC-ceEEEeCCCCCHHHHHHHH
Q 024121 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG---HSRFIRVMPNT------PSAV----GEA-ATVMSLGGTATEEDGELIG 155 (272)
Q Consensus 90 ~l~~~l~~~~~iis~~~~~~~~~l~~~~~---~~~~~~~~p~~------~~~~----~~g-~~~~~~~~~~~~~~~~~v~ 155 (272)
++.+ ++++++|+++ ++++.. +.+.+. ..++++.||+. |... ..| .+++++.+..+++.++.++
T Consensus 77 ~l~~-l~~~~iv~d~-gs~k~~-i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~ 153 (275)
T PRK08507 77 KLLD-IKENTTIIDL-GSTKAK-IIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAK 153 (275)
T ss_pred HHhc-cCCCCEEEEC-ccchHH-HHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHH
Confidence 9988 8889988874 444333 333222 24689999974 3221 234 3456666666788899999
Q ss_pred HHhhhcCC-eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 024121 156 KLFGSVGK-IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKD 232 (272)
Q Consensus 156 ~ll~~~G~-~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~ 232 (272)
++|+.+|. ++++++++||..++++ .|+++. .++++... .+.+.+....+..++|+++++++. .+|++|.+
T Consensus 154 ~l~~~~G~~~~~~~~~~hD~~~a~vs~lph~~a---~~l~~~~~-~~~~~~~~~~~~~~gfrd~tria~---~~p~l~~~ 226 (275)
T PRK08507 154 EIFSGLGMRIVYMDAKEHDLHAAYISHLPHIIS---FALANTVL-KEEDERNIFDLAGGGFRSMSRLAK---SSPAMWSD 226 (275)
T ss_pred HHHHHhCCEEEEeCHHHHHHHHHHHhHHHHHHH---HHHHHHHH-hcCChHHHHhhcccchhhhhhccc---CCHHHHHH
Confidence 99999994 5889999999999988 555433 35554443 466777788999999999998864 58999999
Q ss_pred hcCCCcchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024121 233 DVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 233 ~~~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~~~r~~~ 270 (272)
.+..+.....+.++.+.+. .+...+. +.+.+.++++++
T Consensus 227 i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~~~~~~~~ 270 (275)
T PRK08507 227 IFKQNKENVLEAIDEFIKELEQFKQLIENEDWEELEEWMEQANK 270 (275)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999887777777766554 4444442 355555555543
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=195.10 Aligned_cols=248 Identities=16% Similarity=0.203 Sum_probs=182.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-eecCchhhhccCCEEEEeeCcccHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDivil~v~~~~~~~v~~ 89 (272)
|||+|||+|.||.+++..|.++|+ +|++| +|++++.+++.+.|.. ...+..+.++++|+||+|+|++.+.++++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~----~V~~~-d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~ 75 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGH----TVYGV-SRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSE 75 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHH
Confidence 589999999999999999999999 99999 9999988888777642 23333456789999999999999999999
Q ss_pred HhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhh-----------hcCCceEEEeCCCCCHHHHHHHHHH
Q 024121 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSA-----------VGEAATVMSLGGTATEEDGELIGKL 157 (272)
Q Consensus 90 ~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~-----------~~~g~~~~~~~~~~~~~~~~~v~~l 157 (272)
++.++++++.+|+ .+++++...++.... ..++++.||..... ......++++.+..+++.++.++++
T Consensus 76 ~l~~~l~~~~ii~-d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l 154 (279)
T PRK07417 76 QLIPALPPEAIVT-DVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEEL 154 (279)
T ss_pred HHHHhCCCCcEEE-eCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHH
Confidence 9988887776555 457777776665443 24688888843211 1223455677777788999999999
Q ss_pred hhhcCCe-EEcCcccchhHHHch--HHHHHHHHHHHHHHHHHH-cCCCH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 024121 158 FGSVGKI-WRADEKLFDAITGLS--GPAYIFLAIEALADGGVA-AGLPR-ELALGLASQTVLGAASMVTKSGKHPGQLKD 232 (272)
Q Consensus 158 l~~~G~~-~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~-~Gl~~-~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~ 232 (272)
++.+|.. +++++++||..++++ .|++++. ++...... ..-+. +.+..+..++|+++++++. .+|.+|.+
T Consensus 155 ~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~---~l~~~~~~~~~~~~~~~~~~~~~~gfrd~tRia~---~~p~~w~~ 228 (279)
T PRK07417 155 AVSLGSKIYTADPEEHDRAVALISHLPVMVSA---ALIQTCGTEKDPSVLKLAQNLASSGFADTSRVGG---GNPELGVM 228 (279)
T ss_pred HHHcCCEEEEcCHHHHHHHHHHHcchHHHHHH---HHHHHHhhcccchhhHHhhhhccCcccccccccC---CChHHHHH
Confidence 9999965 789999999999988 7777653 33322211 11111 2235788899999988864 58999999
Q ss_pred hcCCCcchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024121 233 DVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 233 ~~~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~~~r~~~ 270 (272)
.+.++.....+.|+.+++. .++..+. +.+.+.++++++
T Consensus 229 i~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 272 (279)
T PRK07417 229 MAEYNRAALLRSLASYRQSLDQLEELIEQENWSALEQKLEQTQE 272 (279)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999887777777776554 4444443 455566665554
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=201.32 Aligned_cols=245 Identities=17% Similarity=0.191 Sum_probs=186.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce----eecCchhhhccCCEEEEeeCcccHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK----VLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~----~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
++|+|||+|.||.+|+.+|.++|+ ++.+| +++++..+.....+.. ...+..+++++||+||+|||++.+.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~----~v~i~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~ 75 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP----DVFII-GYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAA 75 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC----CeEEE-EeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHH
Confidence 479999999999999999999998 88888 8877654443333332 23455677899999999999999999
Q ss_pred HHHHhch-hcCCCCEEEEEcCCCCHHHH---HHHhC-CCCEEEEccCchh-----------hhcCCceEEEeCCCCCHHH
Q 024121 87 VAMQIRP-LLSRKKLLVSVAAGVKLKDL---QEWTG-HSRFIRVMPNTPS-----------AVGEAATVMSLGGTATEED 150 (272)
Q Consensus 87 v~~~l~~-~l~~~~~iis~~~~~~~~~l---~~~~~-~~~~~~~~p~~~~-----------~~~~g~~~~~~~~~~~~~~ 150 (272)
++.++.+ .++++.+|. ..++++...+ ++.++ ..++++.||.... .+....+++++++..+++.
T Consensus 76 vl~~l~~~~l~~~~ivt-Dv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~ 154 (359)
T PRK06545 76 LLAELADLELKPGVIVT-DVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDA 154 (359)
T ss_pred HHHHHhhcCCCCCcEEE-eCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHH
Confidence 9999987 477775554 4567765443 33333 3567887774321 1233456778777778999
Q ss_pred HHHHHHHhhhcCCe-EEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 024121 151 GELIGKLFGSVGKI-WRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHP 227 (272)
Q Consensus 151 ~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~ 227 (272)
++.++++|+.+|.. +++++++||.+++++ +|+|++. +| +...+.+.+.+..+..++|+++++++. .+|
T Consensus 155 ~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~---al---~~~~~~~~~~~~~la~~gfrd~tRia~---~~p 225 (359)
T PRK06545 155 VAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILAS---SL---AARLAGEHPLALRLAAGGFRDITRIAS---SDP 225 (359)
T ss_pred HHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHH---HH---HHhhccCchHHHhhhcccccCCccccC---CCH
Confidence 99999999999965 679999999999988 8988764 33 344566778888999999999999974 689
Q ss_pred HHHHHhcCCCcchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024121 228 GQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 228 ~~l~~~~~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~~~r~~~ 270 (272)
.+|.+.+.+|++.+.+.|+.+.+. .+...+. +.+.+.++++++
T Consensus 226 ~~w~di~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 274 (359)
T PRK06545 226 GMWRDILESNAEALLDALDEWIEDLDRARDALESGDAEAIAELFDAGKA 274 (359)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988888665 5555554 356666666554
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=189.48 Aligned_cols=249 Identities=20% Similarity=0.177 Sum_probs=179.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v~~ 89 (272)
+||+|||+|+||.+|+.+|.++|+ +|++| ||++++.+++.+.|+..+.++.++++++|+||+|||++ ++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~----~V~v~-d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~ 76 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH----QLQVF-DVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLF 76 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHc
Confidence 589999999999999999999999 99999 99999999998888887788888899999999999987 4788874
Q ss_pred ---HhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEEc-cCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhc
Q 024121 90 ---QIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (272)
Q Consensus 90 ---~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~ 161 (272)
.+.+.+++++++|++++..+. ..+.+.+. +..++.+. .+.+.....|...++.| .+++.+++++++|+.+
T Consensus 77 ~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~g--g~~~~~~~~~p~l~~~ 154 (296)
T PRK15461 77 GENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAG--GTAEQVERATPILMAM 154 (296)
T ss_pred CcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEEC--CCHHHHHHHHHHHHHH
Confidence 355667889999987554432 34444332 33444321 12233334565544444 3789999999999999
Q ss_pred CC-eEEcCcccchhHHHchHHHHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCC
Q 024121 162 GK-IWRADEKLFDAITGLSGPAYI----FLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 236 (272)
Q Consensus 162 G~-~~~~~e~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~ 236 (272)
|+ .+++++......++++.+.+. ..+.|++. .+++.|+|++.+.+++..+..++..+.. ..+..+.+..++
T Consensus 155 g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~-l~~~~Gld~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~ 230 (296)
T PRK15461 155 GNELINAGGPGMGIRVKLINNYMSIALNALSAEAAV-LCEALGLSFDVALKVMSGTAAGKGHFTT---TWPNKVLKGDLS 230 (296)
T ss_pred cCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCcccChHHHc---cccchhccCCCC
Confidence 95 588888766777777632222 23344443 5689999999999999877666554432 234355566678
Q ss_pred CcchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhh
Q 024121 237 PGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRE 270 (272)
Q Consensus 237 ~~g~t~~~l~~l-------~~~~~~~~~~~~~~~~~~r~~~ 270 (272)
|+++.....+.+ ++.++...+.++..+.|+++.+
T Consensus 231 ~~f~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~ 271 (296)
T PRK15461 231 PAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARA 271 (296)
T ss_pred CCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence 877655555543 5568888888888888888765
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-26 Score=218.23 Aligned_cols=248 Identities=17% Similarity=0.217 Sum_probs=194.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce--eecCchhhhccCCEEEEeeCcccHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
.+||+|||+|+||.++++.|.+.|+ ..+|++| +|++++.+.+.+.|+. ...+..++++++|+||+|||++.+.++
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~--~~~V~~~-d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~v 79 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGL--AREVVAV-DRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKV 79 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCC--CCEEEEE-ECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHH
Confidence 4789999999999999999999883 1279999 9999888877777764 344566778899999999999999999
Q ss_pred HHHhchhcCCCCEEEEEcCCCC---HHHHHHHhCCCCEEEEccCchhhh--------------cCCceEEEeCCCCCHHH
Q 024121 88 AMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTGHSRFIRVMPNTPSAV--------------GEAATVMSLGGTATEED 150 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~~---~~~l~~~~~~~~~~~~~p~~~~~~--------------~~g~~~~~~~~~~~~~~ 150 (272)
++++.++++++.+|+ ..++++ .+.+++.++. ..++++|++|... ..+.+++++....+++.
T Consensus 80 l~~l~~~~~~~~ii~-d~~svk~~~~~~l~~~~~~-~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~ 157 (735)
T PRK14806 80 LADLKPLLSEHAIVT-DVGSTKGNVVDAARAVFGE-LPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAA 157 (735)
T ss_pred HHHHHHhcCCCcEEE-EcCCCchHHHHHHHHhccc-cCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHH
Confidence 999998887776554 456666 4566666553 3567888888542 12234667777778889
Q ss_pred HHHHHHHhhhcCCe-EEcCcccchhHHHch--HHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024121 151 GELIGKLFGSVGKI-WRADEKLFDAITGLS--GPA-YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKH 226 (272)
Q Consensus 151 ~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~--~~~-~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~ 226 (272)
.+.++++|+.+|.. +++++++||.+++++ +|+ |.+.+++++. +.|. ...++++..++|+++++++. .+
T Consensus 158 ~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~----~~~~-~~~~~~~a~~~f~~~tRia~---~~ 229 (735)
T PRK14806 158 LARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQLA----NRED-NLDIFRYAAGGFRDFTRIAA---SD 229 (735)
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHHh----hcCC-hhHHHhhhccchhccccccc---CC
Confidence 99999999999964 788999999999998 887 5666666554 3443 33577899999999999873 68
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHh--CCHHHHHH----HHHHHHHHHHhh
Q 024121 227 PGQLKDDVASPGGTTIAGIHELEK--SGFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 227 ~~~l~~~~~~~~g~t~~~l~~l~~--~~~~~~~~----~~~~~~~~r~~~ 270 (272)
|++|.+.+.+|++++.++++.|++ ++|...+. +.+.+.++++++
T Consensus 230 p~~~~di~~~n~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~~~~~~~~ 279 (735)
T PRK14806 230 PVMWHDIFLANKEAVLRALDHFRDDLDALRAAIEAGDGHALLGVFTRARA 279 (735)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999988 57777776 466666666554
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=186.59 Aligned_cols=245 Identities=16% Similarity=0.160 Sum_probs=175.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v~~ 89 (272)
|||||||+|+||.+|+++|.++|+ +|++| +|++. .+.+.+.|+..+.++.++++++|+||+|||++ ++++++.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~----~v~v~-~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~ 74 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGH----QLHVT-TIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLF 74 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC----eEEEE-eCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHc
Confidence 589999999999999999999999 99999 99874 56777788888888889899999999999876 6788873
Q ss_pred H---hchhcCCCCEEEEEcCCCCHHH---HHHHhC--CCCEEEEccC--chhhhcCCceEEEeCCCCCHHHHHHHHHHhh
Q 024121 90 Q---IRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDGELIGKLFG 159 (272)
Q Consensus 90 ~---l~~~l~~~~~iis~~~~~~~~~---l~~~~~--~~~~~~~~p~--~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~ 159 (272)
+ +.+.+.++++||++ ++++++. +.+.+. +..++.. |. .+.....|...++.+ .+++.+++++++|+
T Consensus 75 ~~~g~~~~~~~g~ivvd~-sT~~p~~~~~~~~~~~~~G~~~vda-PVsGg~~~a~~g~l~~~~g--G~~~~~~~~~p~l~ 150 (292)
T PRK15059 75 GENGCTKASLKGKTIVDM-SSISPIETKRFARQVNELGGDYLDA-PVSGGEIGAREGTLSIMVG--GDEAVFERVKPLFE 150 (292)
T ss_pred CCcchhccCCCCCEEEEC-CCCCHHHHHHHHHHHHHcCCCEEEe-cCCCCHHHHhcCcEEEEEc--CCHHHHHHHHHHHH
Confidence 2 55566789999987 4555543 333332 3455553 32 233334565444333 27889999999999
Q ss_pred hcCC-eEEcCcccchhHHHchHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhc
Q 024121 160 SVGK-IWRADEKLFDAITGLSGPAYIF----LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDV 234 (272)
Q Consensus 160 ~~G~-~~~~~e~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~ 234 (272)
.+|+ .+++++......++++.+.+.. .+.|++. .+++.|+|++.+.+++..+...+..+ .. ....+.+..
T Consensus 151 ~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~-la~~~Gld~~~~~~~l~~~~~~s~~~-~~---~~~~~~~~~ 225 (292)
T PRK15059 151 LLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALL-FASKAGADPVRVRQALMGGFASSRIL-EV---HGERMIKRT 225 (292)
T ss_pred HHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHcCcccCHHH-Hh---hchhhhcCC
Confidence 9995 5889998888888877333333 3444444 46899999999999987665444433 21 223455566
Q ss_pred CCCcchHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHhh
Q 024121 235 ASPGGTTIAGIHE-------LEKSGFRGILMNAVVAAAKRSRE 270 (272)
Q Consensus 235 ~~~~g~t~~~l~~-------l~~~~~~~~~~~~~~~~~~r~~~ 270 (272)
++|+++.....+. .++.++...+.++..+.|+.+.+
T Consensus 226 ~~~~f~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~ 268 (292)
T PRK15059 226 FNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAA 268 (292)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence 6787766555444 35568888888888888887764
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-25 Score=197.48 Aligned_cols=246 Identities=15% Similarity=0.214 Sum_probs=187.1
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
|||+||| +|.||.+++..|.+.|+ +|++| +|++++..++.. .|+....+..+.+.++|+||+|+|++.+.+++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~----~V~v~-~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl 75 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF----EVIVT-GRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVI 75 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC----EEEEE-ECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHH
Confidence 6899997 89999999999999999 99999 999887655444 68777777778889999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcC--CCCHHHHHHHhC-CCCEEEEccCc----hhhhcCCceEEEeCCCCCHHHHHHHHHHhhhc
Q 024121 89 MQIRPLLSRKKLLVSVAA--GVKLKDLQEWTG-HSRFIRVMPNT----PSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~--~~~~~~l~~~~~-~~~~~~~~p~~----~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~ 161 (272)
.++.+.++++++|+++++ +...+.+++.++ +.++++.||.. |. ......++++++..+++..+.++++|+.+
T Consensus 76 ~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~-~~g~~~il~p~~~~~~~~~~~v~~ll~~~ 154 (437)
T PRK08655 76 KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPS-LKGQVVILTPTEKRSNPWFDKVKNFLEKE 154 (437)
T ss_pred HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcc-cCCCEEEEecCCCCCHHHHHHHHHHHHHc
Confidence 999999999999998765 223455666665 35788888642 22 22223456666666788899999999999
Q ss_pred CCe-EEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH----HHHHHhcCCCHHHHHHhc
Q 024121 162 GKI-WRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA----ASMVTKSGKHPGQLKDDV 234 (272)
Q Consensus 162 G~~-~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~----~~~~~~~~~~~~~l~~~~ 234 (272)
|.. +++++++||.+++.+ .|++++. +++.++.+.|++.+++..+..++|+.. ++.+ +.+|.+|.+..
T Consensus 155 G~~v~~~~~e~HD~~~a~vs~lph~~a~---al~~~l~~~g~~~~~~~~~a~~~frd~~~~~tRIa---~~~p~lw~dI~ 228 (437)
T PRK08655 155 GARVIVTSPEEHDRIMSVVQGLTHFAYI---SIASTLKRLGVDIKESRKFASPIYELMIDIIGRIL---GQNPYLYASIQ 228 (437)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHhhcChhhHHHHHHHHHHh---cCCHHHHHHHH
Confidence 954 778999999999887 6666543 455566778999999999999999986 5554 36899999998
Q ss_pred CCCcchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHh
Q 024121 235 ASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSR 269 (272)
Q Consensus 235 ~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~~~r~~ 269 (272)
.++. ...+.++.+.+. .++..+. +.+.+.+++++
T Consensus 229 ~~N~-~~~~~l~~~~~~l~~l~~~l~~~D~~~l~~~~~~a~ 268 (437)
T PRK08655 229 MNNP-QIPEIHETFIKECEELSELVKNGDREEFVERMKEAA 268 (437)
T ss_pred HhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8876 566777766544 4444443 44444444444
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=184.03 Aligned_cols=255 Identities=15% Similarity=0.216 Sum_probs=182.5
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc--eeecCchhhhccCCEEEEeeCcc
Q 024121 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~aDivil~v~~~ 82 (272)
+.+ ..++|+|||+|.||.+++..|.+.|+ ..+|++| +|++++.+.+.+.|+ ....+..++++++|+||+|+|+.
T Consensus 2 ~~~-~~~~I~IIG~G~mG~sla~~l~~~g~--~~~V~~~-dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 2 SAP-LFDRVALIGIGLIGSSLARAIRRLGL--AGEIVGA-DRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred Ccc-CCcEEEEEeeCHHHHHHHHHHHhcCC--CcEEEEE-ECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH
Confidence 444 45799999999999999999999884 1279999 999998888777764 34456677789999999999999
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHH---hC-CCCEEEEccCchhh-----------hcCCceEEEeCCCCC
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW---TG-HSRFIRVMPNTPSA-----------VGEAATVMSLGGTAT 147 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~---~~-~~~~~~~~p~~~~~-----------~~~g~~~~~~~~~~~ 147 (272)
...+++.++.+.++++++|+++ ++++...++.. ++ +.+++..||..... ......++++....+
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dv-gs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~ 156 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDV-GSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTD 156 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeC-ccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCC
Confidence 9999998888888888777654 66665544433 33 23456656543211 011234466655667
Q ss_pred HHHHHHHHHHhhhcCCe-EEcCcccchhHHHch--HHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhc
Q 024121 148 EEDGELIGKLFGSVGKI-WRADEKLFDAITGLS--GPAYIFLAIEALADGGV-AAGLPRELALGLASQTVLGAASMVTKS 223 (272)
Q Consensus 148 ~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~-~~Gl~~~~a~~~~~~~~~g~~~~~~~~ 223 (272)
++.++.++++|+.+|.. ++++++.||..++++ +|++++..+ +.... ....+.+....+...+|++++++..
T Consensus 157 ~~~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l---~~~~~~~~~~~~~~~~~~~~~gfrd~tRia~-- 231 (307)
T PRK07502 157 PAAVARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTI---VGTADDLERVTESEVIKYSASGFRDFTRIAA-- 231 (307)
T ss_pred HHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHH---HHHHhhhcccchHHHHHhccccccccccccc--
Confidence 88899999999999965 788999999999988 888876543 22221 1233445566788888988887764
Q ss_pred CCCHHHHHHhcCCCcchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024121 224 GKHPGQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 224 ~~~~~~l~~~~~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~~~r~~~ 270 (272)
.+|++|.+.+..+.....+.|+.+++. .++..+. +.+.+.++++++
T Consensus 232 -~~~~~w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 283 (307)
T PRK07502 232 -SDPTMWRDVFLHNKDAVLEMLGRFTEDLAALQRAIRWGDGDALFDLFTRTRA 283 (307)
T ss_pred -CChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 589999999988887777777777664 4555553 355555555543
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-24 Score=181.28 Aligned_cols=243 Identities=16% Similarity=0.144 Sum_probs=179.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhh-ccCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV-EYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~aDivil~v~~~~~~~ 86 (272)
+..++|+|||+|.||.+++..|.+.|+ +|++| ++++.. +...+.|+....+..+++ .++|+||+|||++.+.+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~----~V~~~-d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~ 107 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGH----TVLAT-SRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEA 107 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCC----EEEEE-ECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHH
Confidence 456899999999999999999999998 99999 888642 334447777666777765 47999999999999999
Q ss_pred HHHHh-chhcCCCCEEEEEcC--CCCHHHHHHHhC-CCCEEEEccCchhhhcC----CceEEEeC-----CCCCHHHHHH
Q 024121 87 VAMQI-RPLLSRKKLLVSVAA--GVKLKDLQEWTG-HSRFIRVMPNTPSAVGE----AATVMSLG-----GTATEEDGEL 153 (272)
Q Consensus 87 v~~~l-~~~l~~~~~iis~~~--~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~----g~~~~~~~-----~~~~~~~~~~ 153 (272)
++.++ .++++++++|+|+.+ +...+.+++.++ +.++++.||+.+.+.+. +...+... +..+++..+.
T Consensus 108 vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 187 (304)
T PLN02256 108 VLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCER 187 (304)
T ss_pred HHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHH
Confidence 99988 577889999998866 344566777665 45799999987765432 22222221 3446788899
Q ss_pred HHHHhhhcCC-eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-cCCCHHH
Q 024121 154 IGKLFGSVGK-IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTK-SGKHPGQ 229 (272)
Q Consensus 154 v~~ll~~~G~-~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~-~~~~~~~ 229 (272)
++++|+.+|. .++++.++||.+++.+ .|+.++ .++.. ...+ ...+...+|++.++++.+ ...+|.+
T Consensus 188 l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la---~~L~~----~~~~---~~~~~~~gfrd~tria~r~~~~~p~l 257 (304)
T PLN02256 188 FLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTVG---RILGK----MELE---STPINTKGYETLLRLVENTSSDSFDL 257 (304)
T ss_pred HHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHH---HHHHH----cCCc---ccccccccHHHHHHHHHhhcCCCHHH
Confidence 9999999995 5889999999998876 555433 23332 2222 146778889998888741 2358999
Q ss_pred HHHhcCCCcchHHHHHHHHHhC--CHHHHHHHHHHHHHHH
Q 024121 230 LKDDVASPGGTTIAGIHELEKS--GFRGILMNAVVAAAKR 267 (272)
Q Consensus 230 l~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~~~~~~~~r 267 (272)
|.+.+..+.... +.++.+.+. .|+..+..-+...++|
T Consensus 258 w~dI~~~N~~~~-~~i~~~~~~l~~~~~~l~~~~~~~~~~ 296 (304)
T PLN02256 258 YYGLFMYNPNAT-EELERLELAFDSVKKQLFGRLHDVLRK 296 (304)
T ss_pred HHHHHHHChHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999998887776 888888775 6666666666555544
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=178.03 Aligned_cols=245 Identities=18% Similarity=0.205 Sum_probs=176.9
Q ss_pred EEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccHHHHH---HH
Q 024121 15 FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDVA---MQ 90 (272)
Q Consensus 15 iIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~~~v~---~~ 90 (272)
|||+|+||.+|+++|.++|+ +|++| ||++++.+.+.+.|+..+.++.++++++|+||+|||+ +++++++ ++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~----~V~v~-dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~ 75 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH----PVRVF-DLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEG 75 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcch
Confidence 68999999999999999999 99999 9999999999888988888889999999999999987 5688888 67
Q ss_pred hchhcCCCCEEEEEcCCCCHHH---HHHHhC--CCCEEEEcc--CchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCC
Q 024121 91 IRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRVMP--NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK 163 (272)
Q Consensus 91 l~~~l~~~~~iis~~~~~~~~~---l~~~~~--~~~~~~~~p--~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~ 163 (272)
+.+.+++++++|+++ +++.+. +.+.+. +..++.. | +.+.....|...++.|. +++.++.++++|+.+|+
T Consensus 76 l~~~~~~g~~vid~s-t~~p~~~~~~~~~~~~~g~~~vda-Pv~Gg~~~a~~g~l~~~~gg--~~~~~~~~~~~l~~~g~ 151 (288)
T TIGR01692 76 ILPKVAKGSLLIDCS-TIDPDSARKLAELAAAHGAVFMDA-PVSGGVGGARAGTLTFMVGG--VAEEFAAAEPVLGPMGR 151 (288)
T ss_pred HhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHcCCcEEEC-CCCCCHHHHhhCcEEEEECC--CHHHHHHHHHHHHHhcC
Confidence 877888999999875 666543 333332 3445543 2 22333345554444342 67889999999999995
Q ss_pred -eEEcCcccchhHHHchHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHhc
Q 024121 164 -IWRADEKLFDAITGLSGPAYIFL----AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPG----QLKDDV 234 (272)
Q Consensus 164 -~~~~~e~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~----~l~~~~ 234 (272)
.+++++...+..++++.+.+... +.|++. .+++.|+|+++..+++..+...+..+... ...+. .+.++.
T Consensus 152 ~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~-la~~~Gld~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~~~~ 229 (288)
T TIGR01692 152 NIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMA-LGEKLGLDPKVLFEIANTSSGRCWSSDTY-NPVPGVMPQAPASNG 229 (288)
T ss_pred CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCccCcHHHHh-CCCccccccccccCC
Confidence 58888877778888773333333 344443 56899999999999998765444322211 11111 234456
Q ss_pred CCCcchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhh
Q 024121 235 ASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRE 270 (272)
Q Consensus 235 ~~~~g~t~~~l~~l-------~~~~~~~~~~~~~~~~~~r~~~ 270 (272)
++|++.....++.+ ++.++...+.++..+.|+++.+
T Consensus 230 ~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 272 (288)
T TIGR01692 230 YQGGFGTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDD 272 (288)
T ss_pred CCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence 67877666555544 5558888888888888888765
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-23 Score=173.97 Aligned_cols=250 Identities=19% Similarity=0.259 Sum_probs=180.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC--HHHHHHHHHcCcee--ecCc-hhhhccCCEEEEeeCccc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRDAFESIGVKV--LSDN-NAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~--~~~~~~l~~~g~~~--~~~~-~~~~~~aDivil~v~~~~ 83 (272)
..++|+|+|+|.||.++++.|.++|+ .+.++ +++ .+..+...+.|+.- ..+. .+.+.++|+||+|||...
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~----~v~i~-g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~ 76 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGL----VVRII-GRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEA 76 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCC----eEEEE-eecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHH
Confidence 46899999999999999999999999 77666 554 44444444456532 1222 566778999999999999
Q ss_pred HHHHHHHhchhcCCCCEEEEEcCCCCHH---HHHHHhCC-CCEEEEccCchh-----hhcCCceEEEeCCCCCHHHHHHH
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTGH-SRFIRVMPNTPS-----AVGEAATVMSLGGTATEEDGELI 154 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~~~~~~---~l~~~~~~-~~~~~~~p~~~~-----~~~~g~~~~~~~~~~~~~~~~~v 154 (272)
+.++++++.++++++.+|++. ++++.. .+++..++ .+++..||.... .......++++.+..+.+.++.+
T Consensus 77 ~~~~l~~l~~~l~~g~iv~Dv-~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~ 155 (279)
T COG0287 77 TEEVLKELAPHLKKGAIVTDV-GSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEV 155 (279)
T ss_pred HHHHHHHhcccCCCCCEEEec-ccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHH
Confidence 999999999999999998886 445544 44455542 368888886433 12334566788776778899999
Q ss_pred HHHhhhcCC-eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 024121 155 GKLFGSVGK-IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 231 (272)
Q Consensus 155 ~~ll~~~G~-~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~ 231 (272)
+.+|+.+|. .++++.++||..++.+ .|++++. ++.....+.+.......++...+|+..++++. .+|.+|.
T Consensus 156 ~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~---al~~~~~~~~~~~~~~~~~as~~frd~tRia~---~~P~m~~ 229 (279)
T COG0287 156 KRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAAL---ALANALAKLETEELLVLKLASGGFRDITRIAS---SDPEMYA 229 (279)
T ss_pred HHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHH---HHHHHHHhcCcchhHHHhccccchhhHHHHHc---CChHHHH
Confidence 999999994 5889999999999987 5665443 55544555555455578899999998888875 5899999
Q ss_pred HhcCCCcchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024121 232 DDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 232 ~~~~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~~~r~~~ 270 (272)
+....+.....+.++.+.+. .+...+. +.+.+.++++++
T Consensus 230 dI~~~N~~~~l~~i~~~~~~l~~l~~~i~~~d~~~l~~~~~~a~~ 274 (279)
T COG0287 230 DIQLSNKEALLEAIERFAKSLDELKELIENGDAEALADLFEEAKK 274 (279)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99988887666666665443 2222222 455555555554
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=186.88 Aligned_cols=194 Identities=12% Similarity=0.112 Sum_probs=146.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----Cce---eecCchhhhcc---CCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVK---VLSDNNAVVEY---SDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g~~---~~~~~~~~~~~---aDivil~ 78 (272)
+.++|||||+|.||++|+++|+++|| +|++| ||++++.+.+.+. |.. .+.++.++++. +|+||+|
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~----~V~V~-NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGF----PISVY-NRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCC----eEEEE-CCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEE
Confidence 56789999999999999999999999 99999 9999999988763 543 56788888875 9999999
Q ss_pred eCcc-cHHHHHHHhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEE-ccCchhhhcCCceEEEeCCCCCHHHHH
Q 024121 79 VKPQ-VVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGE 152 (272)
Q Consensus 79 v~~~-~~~~v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~ 152 (272)
||+. ++++|++++.+.+.++++||++++..+. ..+.+.+. +.+++.+ +.+.|.....|.++++.| +++.++
T Consensus 80 v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG---~~~a~~ 156 (493)
T PLN02350 80 VKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGG---SFEAYK 156 (493)
T ss_pred CCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecC---CHHHHH
Confidence 9865 6889999999999999999998554332 23333332 3455543 123344456677555444 789999
Q ss_pred HHHHHhhhcC-C------eEEcCcccchhHHHchHHHHHHHHHHHHHHH---HHH-cCCCHHHHHHHHH
Q 024121 153 LIGKLFGSVG-K------IWRADEKLFDAITGLSGPAYIFLAIEALADG---GVA-AGLPRELALGLAS 210 (272)
Q Consensus 153 ~v~~ll~~~G-~------~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~~-~Gl~~~~a~~~~~ 210 (272)
+++++|+.+| + ++++++.....+++++.+.+.+..+.+++|+ +++ .|+++++..+++.
T Consensus 157 ~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~ 225 (493)
T PLN02350 157 NIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFA 225 (493)
T ss_pred HHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 9999999998 3 5788988878888887554555555555554 456 5999999988854
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=174.78 Aligned_cols=199 Identities=16% Similarity=0.146 Sum_probs=149.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhcc---CCEEEEeeCcc-cHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY---SDVVVFSVKPQ-VVKD 86 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---aDivil~v~~~-~~~~ 86 (272)
|+|||||+|+||.+|+++|.++|+ +|.+| ||++++.+.+.+.|+..+.++++++++ +|+||+|||++ ++++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~----~v~v~-dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~ 75 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGH----EVVGY-DVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTES 75 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHH
Confidence 589999999999999999999999 99999 999999999888888888888888776 69999999987 8899
Q ss_pred HHHHhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEE-ccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhc
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~ 161 (272)
+++++.+.+++++++|++++..+. ..+.+.+. +..++.. +.+.|.....|.+++..| +++.+++++++|+.+
T Consensus 76 v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG---~~~~~~~~~~~l~~~ 152 (299)
T PRK12490 76 VIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGG---DKEIYDRLEPVFKAL 152 (299)
T ss_pred HHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecC---CHHHHHHHHHHHHHh
Confidence 999998888899999988554432 33334332 3344432 123344445666555544 788999999999999
Q ss_pred CC----eEEcCcccchhHHHchHHHHHHHHHHHHHH---HHHHcC--CCHHHHHHHHHH-HHHHHH
Q 024121 162 GK----IWRADEKLFDAITGLSGPAYIFLAIEALAD---GGVAAG--LPRELALGLASQ-TVLGAA 217 (272)
Q Consensus 162 G~----~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~G--l~~~~a~~~~~~-~~~g~~ 217 (272)
|. .+++++......++++.+.+.+..+.++.| .+++.| +|++++++++.. +...+.
T Consensus 153 ~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~ 218 (299)
T PRK12490 153 APEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSW 218 (299)
T ss_pred cCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHH
Confidence 95 478888777777777744444444444444 467888 999999999985 334443
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=172.69 Aligned_cols=248 Identities=18% Similarity=0.173 Sum_probs=172.6
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHHH--
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVA-- 88 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v~-- 88 (272)
||||||+|.||.+|+.+|.+.|+ +|++| ||++++.+.+.+.|.....+..++++++|+||+|+|+. +++.++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~ 75 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY----QLHVT-TIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFG 75 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcC
Confidence 59999999999999999999999 99999 99999999988888877778888899999999999875 567776
Q ss_pred -HHhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEEccC--chhhhcCCceEEEeCCCCCHHHHHHHHHHhhhc
Q 024121 89 -MQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (272)
Q Consensus 89 -~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~~p~--~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~ 161 (272)
..+.+.+++++++|++++..+. ..+.+.+. +.+++. .|. .+.....+...++.+ .+++.++.++++|+.+
T Consensus 76 ~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~-~pv~g~~~~a~~g~l~i~~g--g~~~~~~~~~~ll~~l 152 (291)
T TIGR01505 76 ENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD-APVSGGEIGAIEGTLSIMVG--GDQAVFDRVKPLFEAL 152 (291)
T ss_pred cchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe-cCCCCCHHHHhcCCEEEEec--CCHHHHHHHHHHHHHh
Confidence 3455667889999986543332 24544443 344554 232 222233454333333 2688999999999999
Q ss_pred CC-eEEcCcccchhHHHchHHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCC
Q 024121 162 GK-IWRADEKLFDAITGLSGPAYIFLAIEALAD---GGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASP 237 (272)
Q Consensus 162 G~-~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~ 237 (272)
|. .+++++......++++.+.+....++++.| .+++.|+|++++.+++..+..++..+.. ....+.+..++|
T Consensus 153 g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~----~~~~~~~~~~~~ 228 (291)
T TIGR01505 153 GKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEV----KGERVIDRTFKP 228 (291)
T ss_pred cCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHh----hChhhhcCCCCC
Confidence 95 578887666666666533333333333333 4679999999999999877665543322 123445555677
Q ss_pred cchHHH-------HHHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 238 GGTTIA-------GIHELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 238 ~g~t~~-------~l~~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
++.... .++..++.|+...+.++..+.++++.+.
T Consensus 229 ~f~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 269 (291)
T TIGR01505 229 GFRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRAN 269 (291)
T ss_pred CcchHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHhc
Confidence 655533 3344466688888888888888877653
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=202.40 Aligned_cols=249 Identities=12% Similarity=0.094 Sum_probs=184.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~~~v 87 (272)
...||||||+|+||.+|+++|+++|| +|++| ||++++.+++.+.|+..+.++.+++++||+||+|||+ ++++++
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~----~v~v~-dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V 77 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGF----KVQAF-EISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDV 77 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHH
Confidence 45789999999999999999999999 99999 9999999999999999999999999999999999986 467888
Q ss_pred H---HHhchhcCCCCEEEEEcCCCCHHH---HHHHhC--C--CCEEEE-ccCchhhhcCCceEEEeCCCCCHHHHHHHHH
Q 024121 88 A---MQIRPLLSRKKLLVSVAAGVKLKD---LQEWTG--H--SRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGK 156 (272)
Q Consensus 88 ~---~~l~~~l~~~~~iis~~~~~~~~~---l~~~~~--~--~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ 156 (272)
+ .++.+.++++++||++ ++++++. +.+.+. + ..++.+ +.+.|.....|...++.| ++++.++++++
T Consensus 78 ~~g~~g~~~~l~~g~iivd~-STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvG--G~~~~~~~~~p 154 (1378)
T PLN02858 78 FFGDEGAAKGLQKGAVILIR-STILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIAS--GRSDAITRAQP 154 (1378)
T ss_pred HhchhhHHhcCCCcCEEEEC-CCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEc--CCHHHHHHHHH
Confidence 7 4577778899999987 4555543 333332 2 234432 123344445565554444 27889999999
Q ss_pred HhhhcCCe-EE-cCcccchhHHHchHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 024121 157 LFGSVGKI-WR-ADEKLFDAITGLSGPAYIF----LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQL 230 (272)
Q Consensus 157 ll~~~G~~-~~-~~e~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l 230 (272)
+|+.+|+. ++ .++......++++.+.+.. .+.|++. .+++.|++++.+++++..+..++..+.. ....+
T Consensus 155 ~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~-la~~~Gld~~~l~~vl~~s~g~s~~~~~----~~~~~ 229 (1378)
T PLN02858 155 FLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMA-LGVRAGIHPWIIYDIISNAAGSSWIFKN----HVPLL 229 (1378)
T ss_pred HHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCccCHHHHh----hhhHh
Confidence 99999964 54 4887777778877333333 3444444 4789999999999999988766554432 23456
Q ss_pred HHhcCCCcchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhh
Q 024121 231 KDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRE 270 (272)
Q Consensus 231 ~~~~~~~~g~t~~~l~~l-------~~~~~~~~~~~~~~~~~~r~~~ 270 (272)
.+..++|+++...+.+.+ ++.++.-.+.++..+.|+++.+
T Consensus 230 ~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~ 276 (1378)
T PLN02858 230 LKDDYIEGRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSS 276 (1378)
T ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence 666778887766665554 4557887788888888877765
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-22 Score=171.35 Aligned_cols=194 Identities=20% Similarity=0.181 Sum_probs=152.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-HHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-DAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~-~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
..+.++|+|||+|+||.+++.+|.+.|+ +|.++ +|+.++. +...+.|+... +..+++++||+|+++||++...
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~----~Vvv~-~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~~ 87 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGV----DVVVG-LREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQA 87 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCC----EEEEE-ECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHHH
Confidence 3456899999999999999999999999 99988 7764443 33344677765 7889999999999999999889
Q ss_pred HHH-HHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhh-------hcCCceEEE-eCCCCCHHHHHHHH
Q 024121 86 DVA-MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSA-------VGEAATVMS-LGGTATEEDGELIG 155 (272)
Q Consensus 86 ~v~-~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~-------~~~g~~~~~-~~~~~~~~~~~~v~ 155 (272)
+++ +++.+++++++++ +.+.|+++..++...+ +.++++++|+.|.. .+.|.+.++ ...+.+.++.+.+.
T Consensus 88 ~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~ 166 (330)
T PRK05479 88 EVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLAL 166 (330)
T ss_pred HHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHH
Confidence 998 7799999889877 6789999988776655 57899999999998 789998887 56667789999999
Q ss_pred HHhhhcCCe-E-----EcC-cccchhHHHch-HHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 024121 156 KLFGSVGKI-W-----RAD-EKLFDAITGLS-GPAYIFLAIEALADGGVAAGLPRELALG 207 (272)
Q Consensus 156 ~ll~~~G~~-~-----~~~-e~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~Gl~~~~a~~ 207 (272)
.++..+|.. . ... |.+-+.+..-+ ...++..++.+-.+..++.|++|+.|+-
T Consensus 167 ~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~ 226 (330)
T PRK05479 167 AYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAYF 226 (330)
T ss_pred HHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999999943 2 222 33345554432 3344555666666778899999999863
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-22 Score=170.84 Aligned_cols=248 Identities=19% Similarity=0.204 Sum_probs=171.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v~ 88 (272)
+|||+|||+|.||.+++.+|.+.|+ +|.+| ||++++.+.+.+.|+..+.+..++++++|+||+|+|+. +++.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~----~v~~~-d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~ 76 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGY----SLVVY-DRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVA 76 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHH
Confidence 4689999999999999999999999 99999 99999998888888887788888899999999999854 567776
Q ss_pred ---HHhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEEcc--CchhhhcCCc-eEEEeCCCCCHHHHHHHHHHh
Q 024121 89 ---MQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVMP--NTPSAVGEAA-TVMSLGGTATEEDGELIGKLF 158 (272)
Q Consensus 89 ---~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~~p--~~~~~~~~g~-~~~~~~~~~~~~~~~~v~~ll 158 (272)
+++.+.++++++|+++++..+. ..+.+.+. +.+++.. | ..+.....+. .++..+ +++.++.++++|
T Consensus 77 ~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~-pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~~l 152 (296)
T PRK11559 77 LGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDA-PVSGGEPKAIDGTLSVMVGG---DKAIFDKYYDLM 152 (296)
T ss_pred cCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEc-CCCCCHHHHhhCcEEEEECC---CHHHHHHHHHHH
Confidence 4567778889999977544332 24544443 2334332 2 1122223343 444433 688899999999
Q ss_pred hhcCC-eEEcCcccchhHHHchHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Q 024121 159 GSVGK-IWRADEKLFDAITGLSGPAYIF----LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDD 233 (272)
Q Consensus 159 ~~~G~-~~~~~e~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 233 (272)
+.+|. .+++++......++++.+.+.. .+.|++. .+++.|+++++..+++..+..++..+-. ..+ .+.+.
T Consensus 153 ~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~-l~~~~Gi~~~~~~~~l~~~~~~s~~~~~---~~~-~~~~~ 227 (296)
T PRK11559 153 KAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALV-LATKAGVNPDLVYQAIRGGLAGSTVLDA---KAP-MVMDR 227 (296)
T ss_pred HHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCcccCHHHHh---hch-HhhcC
Confidence 99995 5777766555666666333333 2344443 5678999999999888766555443321 123 34455
Q ss_pred cCCCcchHHHHHH-------HHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 234 VASPGGTTIAGIH-------ELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 234 ~~~~~g~t~~~l~-------~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
.+.|+++.....+ ..++.++...+.++..+.++.+.+.
T Consensus 228 d~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 272 (296)
T PRK11559 228 NFKPGFRIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKAD 272 (296)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence 5677655433333 3456688888888888888877653
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-22 Score=176.10 Aligned_cols=234 Identities=15% Similarity=0.138 Sum_probs=171.1
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
...++|+||| +|.||.+++..|.++|+ +|++| +|++. .+..+++.+||+||+|+|+....+
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~----~V~~~-d~~~~-------------~~~~~~~~~aDlVilavP~~~~~~ 157 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSGY----QVRIL-EQDDW-------------DRAEDILADAGMVIVSVPIHLTEE 157 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCCC----eEEEe-CCCcc-------------hhHHHHHhcCCEEEEeCcHHHHHH
Confidence 3568999998 99999999999999999 99999 98631 244567889999999999999999
Q ss_pred HHHHhchhcCCCCEEEEEcCCCCHH---HHHHHhCCCCEEEEccCchhhh--cCCceEEEeCCCCCHHHHHHHHHHhhhc
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTGHSRFIRVMPNTPSAV--GEAATVMSLGGTATEEDGELIGKLFGSV 161 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~~~---~l~~~~~~~~~~~~~p~~~~~~--~~g~~~~~~~~~~~~~~~~~v~~ll~~~ 161 (272)
++.++.+ ++++++|+|+ ++++.. .+.+..+ .++++.||..+... ..+..++. .+..+++.++.+.++++.+
T Consensus 158 ~~~~l~~-l~~~~iv~Dv-~SvK~~~~~~~~~~~~-~~fvg~HPm~G~~~~~~~~~~vv~-~~~~~~~~~~~~~~l~~~l 233 (374)
T PRK11199 158 VIARLPP-LPEDCILVDL-TSVKNAPLQAMLAAHS-GPVLGLHPMFGPDVGSLAKQVVVV-CDGRQPEAYQWLLEQIQVW 233 (374)
T ss_pred HHHHHhC-CCCCcEEEEC-CCccHHHHHHHHHhCC-CCEEeeCCCCCCCCcccCCCEEEE-cCCCCchHHHHHHHHHHHC
Confidence 9999888 8899998887 444443 3444333 36899998654322 12222332 3334677889999999999
Q ss_pred CC-eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH----HHHHHHhcCCCHHHHHHhc
Q 024121 162 GK-IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG----AASMVTKSGKHPGQLKDDV 234 (272)
Q Consensus 162 G~-~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g----~~~~~~~~~~~~~~l~~~~ 234 (272)
|. ++++++++||..++++ .|++++. +++....+.+.+.+...++..++|.. +++++. .+|.+|.+..
T Consensus 234 G~~v~~~~~~~HD~~~a~vshLpH~~a~---al~~~l~~~~~~~~~~~~~~~~~fr~~la~~tRia~---~~p~lw~dI~ 307 (374)
T PRK11199 234 GARLHRISAVEHDQNMAFIQALRHFATF---AYGLHLAKENVDLEQLLALSSPIYRLELAMVGRLFA---QDPQLYADII 307 (374)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHHhcChHHHHHHHHHHHHHc---CCHHHHHHHH
Confidence 95 5889999999999987 5555432 33333344788888888888888888 777764 5899999999
Q ss_pred CCCcchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024121 235 ASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 235 ~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~~~r~~~ 270 (272)
.++.... +.++.+.++ .+...+. +.+.+.++++++
T Consensus 308 ~~N~~~~-~~l~~~~~~l~~l~~~l~~~d~~~l~~~~~~a~~ 348 (374)
T PRK11199 308 MSSPENL-ALIKRYYQRFGEALELLEQGDKQAFIDSFRKVEH 348 (374)
T ss_pred HhChhHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8887666 777776654 4444443 455555555543
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=163.75 Aligned_cols=151 Identities=25% Similarity=0.418 Sum_probs=113.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~~~v~ 88 (272)
|+||||||+|+||++|+++|.++|| +|++| ||++++.+++.+.|+..+.++.|+++++|+||+|||+ +++++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~----~v~~~-d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~ 75 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGY----EVTVY-DRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVL 75 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTT----EEEEE-ESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCC----eEEee-ccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhh
Confidence 5899999999999999999999999 99999 9999999999999999999999999999999999987 5789999
Q ss_pred HH--hchhcCCCCEEEEEcCCCCHH---HHHHHhC--CCCEEEE-ccCchhhhcCCc-eEEEeCCCCCHHHHHHHHHHhh
Q 024121 89 MQ--IRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRV-MPNTPSAVGEAA-TVMSLGGTATEEDGELIGKLFG 159 (272)
Q Consensus 89 ~~--l~~~l~~~~~iis~~~~~~~~---~l~~~~~--~~~~~~~-~p~~~~~~~~g~-~~~~~~~~~~~~~~~~v~~ll~ 159 (272)
.+ +.+.+.+++++|+++ +++++ .+++.+. +..++.. +.+.|.....|. +++..| +++.+++++++|+
T Consensus 76 ~~~~i~~~l~~g~iiid~s-T~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG---~~~~~~~~~~~l~ 151 (163)
T PF03446_consen 76 FGENILAGLRPGKIIIDMS-TISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGG---DEEAFERVRPLLE 151 (163)
T ss_dssp HCTTHGGGS-TTEEEEE-S-S--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES----HHHHHHHHHHHH
T ss_pred hhhHHhhccccceEEEecC-CcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccC---CHHHHHHHHHHHH
Confidence 88 889999999999874 45544 3444442 3444432 223444455565 555554 7899999999999
Q ss_pred hcCCe-E-EcCc
Q 024121 160 SVGKI-W-RADE 169 (272)
Q Consensus 160 ~~G~~-~-~~~e 169 (272)
.+|.. + +++|
T Consensus 152 ~~~~~v~~~~G~ 163 (163)
T PF03446_consen 152 AMGKNVYHYVGP 163 (163)
T ss_dssp HHEEEEEEE-ES
T ss_pred HHhCCceeeeCc
Confidence 99964 5 4454
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=168.91 Aligned_cols=193 Identities=16% Similarity=0.157 Sum_probs=147.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhcc---CCEEEEeeCcc-cHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY---SDVVVFSVKPQ-VVKD 86 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---aDivil~v~~~-~~~~ 86 (272)
|||||||+|+||++|+++|.++|+ +|.+| ||++++.+.+.+.|+..+.++.++++. +|+||+|+|+. ++++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~----~v~v~-dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~ 75 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGH----EVVGY-DRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDA 75 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHH
Confidence 589999999999999999999999 99999 999999999988899888888888775 69999999987 7899
Q ss_pred HHHHhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEEcc--CchhhhcCCceEEEeCCCCCHHHHHHHHHHhhh
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVMP--NTPSAVGEAATVMSLGGTATEEDGELIGKLFGS 160 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~~p--~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~ 160 (272)
+++++.+.+++++++|+++++.+. ..+.+.+. +..++. .| +.+.....|.+++..| +++.++.++++|+.
T Consensus 76 v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~d-apvsG~~~~a~~g~~~~~gG---~~~~~~~~~~~l~~ 151 (301)
T PRK09599 76 TIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVD-VGTSGGVWGLERGYCLMIGG---DKEAVERLEPIFKA 151 (301)
T ss_pred HHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEe-CCCCcCHHHHhcCCeEEecC---CHHHHHHHHHHHHH
Confidence 998888888899999988655442 23333332 344554 22 2344445666555443 78999999999999
Q ss_pred cCC----e-EEcCcccchhHHHchHHHHHHHHHHHHHH---HHHH--cCCCHHHHHHHHHHH
Q 024121 161 VGK----I-WRADEKLFDAITGLSGPAYIFLAIEALAD---GGVA--AGLPRELALGLASQT 212 (272)
Q Consensus 161 ~G~----~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~--~Gl~~~~a~~~~~~~ 212 (272)
++. . +++++......++++.+.+.+..+.++.| .+++ .|+|+++..+++..+
T Consensus 152 ~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~ 213 (301)
T PRK09599 152 LAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRG 213 (301)
T ss_pred HcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCC
Confidence 997 4 78888777777777644444443444433 3567 999999999999865
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-21 Score=164.12 Aligned_cols=195 Identities=13% Similarity=0.083 Sum_probs=144.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhh---ccCCEEEEeeCcccHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV---EYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~---~~aDivil~v~~~~~~~v 87 (272)
|||||||+|+||.+|+.+|.++|+ +|.+| ||++++.+.+.+.|+....++.++. .++|+||+|||++.++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~----~V~~~-dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v 75 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGH----DCVGY-DHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAV 75 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHH
Confidence 589999999999999999999999 99999 9999999999887776666665543 468999999999999999
Q ss_pred HHHhchhcCCCCEEEEEcCCCCHH--HHHHHhC--CCCEEEEcc-CchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcC
Q 024121 88 AMQIRPLLSRKKLLVSVAAGVKLK--DLQEWTG--HSRFIRVMP-NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVG 162 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~~~~--~l~~~~~--~~~~~~~~p-~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G 162 (272)
++++.+.++++++||+++++.+.. .+.+.+. +.+++.+.. +.+.....|..++..| +++.++.++++|+.++
T Consensus 76 ~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG---~~~~~~~~~~~l~~~~ 152 (298)
T TIGR00872 76 LEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG---DGEAFARAEPLFADVA 152 (298)
T ss_pred HHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC---CHHHHHHHHHHHHHhc
Confidence 999999999999999987665433 2222332 345555432 2233345566555544 7899999999999998
Q ss_pred C----eEEcCcccchhHHHchHHHHHHHHHHHHHH---HHHHc--CCCHHHHHHHHHHHH
Q 024121 163 K----IWRADEKLFDAITGLSGPAYIFLAIEALAD---GGVAA--GLPRELALGLASQTV 213 (272)
Q Consensus 163 ~----~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~--Gl~~~~a~~~~~~~~ 213 (272)
. .+++++......++++.+.+.+..+.++.| .+++. |+|+++..+++..+.
T Consensus 153 ~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~ 212 (298)
T TIGR00872 153 PEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGS 212 (298)
T ss_pred CcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCc
Confidence 4 477888777777777644444444444444 34565 579999999887653
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=170.08 Aligned_cols=192 Identities=13% Similarity=0.192 Sum_probs=144.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----C--ceeecCchhhhc---cCCEEEEeeCc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----G--VKVLSDNNAVVE---YSDVVVFSVKP 81 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~---~aDivil~v~~ 81 (272)
.+|||||+|+||++||.+|.++|| +|++| ||++++.+.+.+. | +..+.++.++++ ++|+||+||++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~----~V~v~-dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF----KISVY-NRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 589999999999999999999999 99999 9999999888763 5 446778888876 58999999865
Q ss_pred -ccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHH--HHhC--CCCEEEEc-cCchhhhcCCceEEEeCCCCCHHHHHHHH
Q 024121 82 -QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQ--EWTG--HSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELIG 155 (272)
Q Consensus 82 -~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~--~~~~--~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~~~~~~~v~ 155 (272)
+.++++++++.+++.++++||+++++...+..+ +.+. +.+++.+. .+.+.....|.+++..| +++.++.++
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG---~~~a~~~~~ 153 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGG---NKEAYDHVK 153 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeC---CHHHHHHHH
Confidence 578999999999999999999987776554322 2221 34454421 22344445677655554 789999999
Q ss_pred HHhhhcC-C------eEEcCcccchhHHHchHHHHHHHHHHHHHHH---HH-HcCCCHHHHHHHHH
Q 024121 156 KLFGSVG-K------IWRADEKLFDAITGLSGPAYIFLAIEALADG---GV-AAGLPRELALGLAS 210 (272)
Q Consensus 156 ~ll~~~G-~------~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~-~~Gl~~~~a~~~~~ 210 (272)
++|+.++ + ++++++.....+++++.+.+.+..++++.|+ ++ +.|+++++..+++.
T Consensus 154 piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 154 DILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred HHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 9999998 5 4778988777788877444444444555443 44 69999999988874
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-21 Score=164.73 Aligned_cols=194 Identities=18% Similarity=0.177 Sum_probs=147.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC--------------ceeecCchhhh
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG--------------VKVLSDNNAVV 69 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g--------------~~~~~~~~~~~ 69 (272)
..+||+|||+|.||.+|+..|.++|+ +|++| ++++++.+++.+ .+ +..+.+..+++
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGL----QVVLI-DVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHh
Confidence 35789999999999999999999999 99999 999988766543 12 24456677778
Q ss_pred ccCCEEEEeeCccc--HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCC
Q 024121 70 EYSDVVVFSVKPQV--VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTA 146 (272)
Q Consensus 70 ~~aDivil~v~~~~--~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 146 (272)
++||+||+|||++. ..+++.++.+.++++++|+|.+++++...+++.++ ..++++.||+.|..... ...+++++..
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~-l~~i~~g~~t 156 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIP-LVEVVRGDKT 156 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCc-eEEEeCCCCC
Confidence 99999999998874 67788888887777778878889999988888775 36799999998877655 4456677778
Q ss_pred CHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 024121 147 TEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQT 212 (272)
Q Consensus 147 ~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~ 212 (272)
+++.++.++++|+.+|+. ++++.+.... +....+...+.|++. .+.+.|+++++..+++..+
T Consensus 157 ~~~~~~~v~~l~~~~G~~~v~~~~d~~G~---i~nr~~~~~~~Ea~~-l~~~g~~~~~~id~~~~~~ 219 (311)
T PRK06130 157 SPQTVATTMALLRSIGKRPVLVKKDIPGF---IANRIQHALAREAIS-LLEKGVASAEDIDEVVKWS 219 (311)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEcCCCCCc---HHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHhc
Confidence 999999999999999975 6665432222 112223334445544 4567778999988887644
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=188.02 Aligned_cols=248 Identities=17% Similarity=0.131 Sum_probs=177.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~~~v 87 (272)
..++|||||+|+||.+|+.+|+++|+ +|++| ||++++.+.+.+.|+....++.+++++||+||+||| +++++++
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~----~V~v~-dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~V 397 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNF----SVCGY-DVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENV 397 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHH
Confidence 35789999999999999999999999 99999 999999999988888777888999999999999998 6778888
Q ss_pred HH---HhchhcCCCCEEEEEcCCCCHH---HHHHHhC----CCCEEEE-ccCchhhhcCCc-eEEEeCCCCCHHHHHHHH
Q 024121 88 AM---QIRPLLSRKKLLVSVAAGVKLK---DLQEWTG----HSRFIRV-MPNTPSAVGEAA-TVMSLGGTATEEDGELIG 155 (272)
Q Consensus 88 ~~---~l~~~l~~~~~iis~~~~~~~~---~l~~~~~----~~~~~~~-~p~~~~~~~~g~-~~~~~~~~~~~~~~~~v~ 155 (272)
+. ++.+.+++++++|+++ +++++ .+.+.+. +..++.. +.+.|.....|. ++++.| +++.+++++
T Consensus 398 l~g~~g~~~~l~~g~ivVd~S-TvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG---~~~~~~~~~ 473 (1378)
T PLN02858 398 LFGDLGAVSALPAGASIVLSS-TVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASG---TDEALKSAG 473 (1378)
T ss_pred HhchhhHHhcCCCCCEEEECC-CCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEEC---CHHHHHHHH
Confidence 73 4666678999999874 45544 3433332 2233332 123344445554 445554 688999999
Q ss_pred HHhhhcCCe-EE-cCcccchhHHHchHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 024121 156 KLFGSVGKI-WR-ADEKLFDAITGLSGPAYIF----LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQ 229 (272)
Q Consensus 156 ~ll~~~G~~-~~-~~e~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~ 229 (272)
++|+.+|+. ++ .++......++++.+.+.. .+.|++. .+++.|+|++.+++++..+...+..+ .. ..+ .
T Consensus 474 plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~-la~k~Gld~~~l~evl~~s~g~s~~~-~~--~~~-~ 548 (1378)
T PLN02858 474 SVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMA-FGARLGLNTRKLFDIISNAGGTSWMF-EN--RVP-H 548 (1378)
T ss_pred HHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHhhcccChhh-hh--ccc-h
Confidence 999999954 55 4566667777776333333 3344443 46799999999999998876655433 21 233 4
Q ss_pred HHHhcCCCcchHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHhh
Q 024121 230 LKDDVASPGGTTIAGIHE-------LEKSGFRGILMNAVVAAAKRSRE 270 (272)
Q Consensus 230 l~~~~~~~~g~t~~~l~~-------l~~~~~~~~~~~~~~~~~~r~~~ 270 (272)
+.+..++|++......+. .++.++...+.++..+.|+.+.+
T Consensus 549 ~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~ 596 (1378)
T PLN02858 549 MLDNDYTPYSALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSA 596 (1378)
T ss_pred hhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence 555667787766555444 35557777788888888877654
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-20 Score=169.70 Aligned_cols=193 Identities=17% Similarity=0.131 Sum_probs=147.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cC-ceeecCchhh
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAV 68 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~ 68 (272)
..|||+|||+|.||++||.+|+++|+ +|++| |+++++.+.+.+ .| +..++++.++
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~----~V~v~-D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea 77 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGI----DVAVF-DPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEA 77 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHH
Confidence 45799999999999999999999999 99999 999988765421 12 5667788888
Q ss_pred hccCCEEEEeeCccc-H-HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCC
Q 024121 69 VEYSDVVVFSVKPQV-V-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGT 145 (272)
Q Consensus 69 ~~~aDivil~v~~~~-~-~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~ 145 (272)
+++||+||.|+|++. + ..++.++.+.++++.+|.|.+++++...+++.+. ..+++..||+.|..... ...+++++.
T Consensus 78 ~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~-Lvevv~g~~ 156 (495)
T PRK07531 78 VAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLP-LVELVGGGK 156 (495)
T ss_pred hcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCc-eEEEcCCCC
Confidence 999999999998774 4 4566778777778878888888998888887765 35788899988876543 445677878
Q ss_pred CCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 024121 146 ATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFL-AIEALADGGVAAGLPRELALGLASQT 212 (272)
Q Consensus 146 ~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~Gl~~~~a~~~~~~~ 212 (272)
++++.++.++++++.+|+. ++++. ..+.+.+ +.++.. +.|++. .+.+.|+++++..+++..+
T Consensus 157 t~~e~~~~~~~~~~~lG~~~v~~~k-~~~gfi~---nrl~~a~~~EA~~-L~~~g~~s~~~id~~~~~g 220 (495)
T PRK07531 157 TSPETIRRAKEILREIGMKPVHIAK-EIDAFVG---DRLLEALWREALW-LVKDGIATTEEIDDVIRYS 220 (495)
T ss_pred CCHHHHHHHHHHHHHcCCEEEeecC-CCcchhH---HHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhhc
Confidence 8899999999999999976 66543 2333332 222233 355554 4567889999998888766
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=176.24 Aligned_cols=243 Identities=13% Similarity=0.113 Sum_probs=171.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhc-cCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDivil~v~~~~~~~ 86 (272)
.+.|||||||+|+||.+++++|.+.|+ +|++| +|+... +...+.|+....+..+++. .+|+||+|||+..+.+
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~G~----~V~~~-dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~ 440 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQGH----TVLAY-SRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEK 440 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHCcC----EEEEE-ECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHH
Confidence 356899999999999999999999998 99999 998653 4455578776667777665 5899999999999999
Q ss_pred HHHHhch-hcCCCCEEEEEcCC--CCHHHHHHHhC-CCCEEEEccCchhhhc-CC---ce-----EEEeCCCCCHHHHHH
Q 024121 87 VAMQIRP-LLSRKKLLVSVAAG--VKLKDLQEWTG-HSRFIRVMPNTPSAVG-EA---AT-----VMSLGGTATEEDGEL 153 (272)
Q Consensus 87 v~~~l~~-~l~~~~~iis~~~~--~~~~~l~~~~~-~~~~~~~~p~~~~~~~-~g---~~-----~~~~~~~~~~~~~~~ 153 (272)
++.++.. .++++++|+|++++ ...+.+++.++ +.++++.||+.+...+ .| .. .++.++....+..+.
T Consensus 441 vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~ 520 (667)
T PLN02712 441 VLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDS 520 (667)
T ss_pred HHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHH
Confidence 9988865 57789999988554 34456666665 4579999998765543 22 11 112222223445566
Q ss_pred HHHHhhhcCC-eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-hcCCCHHH
Q 024121 154 IGKLFGSVGK-IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVT-KSGKHPGQ 229 (272)
Q Consensus 154 v~~ll~~~G~-~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~-~~~~~~~~ 229 (272)
+.++|+.+|. .++++.++||.+++.+ .|+.+. ....+.|++. ..+...+|.....++. ..+.+|..
T Consensus 521 l~~l~~~lGa~vv~ms~eeHD~~~A~vShLpHlla-------~~L~~~~~~~---~~~~~~gfr~l~~Li~Ria~~~p~l 590 (667)
T PLN02712 521 FLDIFAREGCRMVEMSCAEHDWHAAGSQFITHTMG-------RLLEKLGLES---TPINTKGYETLLNLVENTAGDSFDL 590 (667)
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHH-------HHHHHCCCcc---cccccHHHHHHHHHHHhhcCCCHHH
Confidence 7799999994 5889999999988876 444322 2334566542 3445566666654432 23468999
Q ss_pred HHHhcCCCcchHHHHHHHHHhC--CHHHHHHHHHHHHHHH
Q 024121 230 LKDDVASPGGTTIAGIHELEKS--GFRGILMNAVVAAAKR 267 (272)
Q Consensus 230 l~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~~~~~~~~r 267 (272)
|.+....+... .+.++.+++. .++..+..-+...+++
T Consensus 591 ~~dI~~~N~~a-~~~l~~f~~~l~~~~~~l~~~~~~~~~~ 629 (667)
T PLN02712 591 YYGLFMYNVNA-MEQLERLDLAFESLKKQLFGRLHGVLRK 629 (667)
T ss_pred HHHHHHHChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887666 6777777664 6666666666666443
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=162.83 Aligned_cols=237 Identities=12% Similarity=0.107 Sum_probs=162.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
...+||+|||+ |.||.++++.|.+. ++ +|++| |++.+ ...++.+.+.+||+||+|||...+.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~----~V~g~-D~~d~-----------~~~~~~~~v~~aDlVilavPv~~~~ 65 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQL----EVIGH-DPADP-----------GSLDPATLLQRADVLIFSAPIRHTA 65 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCC----EEEEE-cCCcc-----------ccCCHHHHhcCCCEEEEeCCHHHHH
Confidence 34689999999 99999999999974 66 89999 88521 1235567789999999999999999
Q ss_pred HHHHHhchh---cCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhh---cCCc-eEEEeCCCCCHHHHHHHHHH
Q 024121 86 DVAMQIRPL---LSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAV---GEAA-TVMSLGGTATEEDGELIGKL 157 (272)
Q Consensus 86 ~v~~~l~~~---l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~---~~g~-~~~~~~~~~~~~~~~~v~~l 157 (272)
++++++.++ ++++++|+|+ ++++...++...+ +.++++.||....+. .++. .++++. ...+..+.++++
T Consensus 66 ~~l~~l~~~~~~l~~~~iVtDV-gSvK~~i~~~~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~--~~~~~~~~v~~l 142 (370)
T PRK08818 66 ALIEEYVALAGGRAAGQLWLDV-TSIKQAPVAAMLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEA--RLQHWSPWVQSL 142 (370)
T ss_pred HHHHHHhhhhcCCCCCeEEEEC-CCCcHHHHHHHHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCC--CchhHHHHHHHH
Confidence 999998875 6888877776 5666665555544 357999998753321 1333 445544 244557889999
Q ss_pred hhhcCC-eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHH-HH---HHHHHhcCCCH
Q 024121 158 FGSVGK-IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGL---PRELALGLASQTVL-GA---ASMVTKSGKHP 227 (272)
Q Consensus 158 l~~~G~-~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl---~~~~a~~~~~~~~~-g~---~~~~~~~~~~~ 227 (272)
++.+|. +++++.++||.+++.+ .+++.+..+..+.. .... +......+...+|+ ++ ++++. .+|
T Consensus 143 ~~~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~---~~~~~~~~~~~~~~f~~~gFr~d~t~iTRIAs---s~P 216 (370)
T PRK08818 143 CSALQAECVYATPEHHDRVMALVQAMVHATHLAQAGVLR---DYAPLLGELRALMPYRSASFELDTAVIARILS---LNP 216 (370)
T ss_pred HHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccchhhhhhhccccchhhHHHhhhcchhhc---CCH
Confidence 999994 5889999999999987 56655443333321 1111 11111245556666 33 45553 589
Q ss_pred HHHHHhcCCCcchHHHHHHHHHhC--CHHHHHH----HHHHHH---HHHHhh
Q 024121 228 GQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAA---AKRSRE 270 (272)
Q Consensus 228 ~~l~~~~~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~---~~r~~~ 270 (272)
.+|.+...++. ...+.++.+.+. .+...+. +++... ++++++
T Consensus 217 ~mW~dI~~~N~-~i~~~l~~~~~~L~~l~~~i~~~D~~~~~~~~~~f~~a~~ 267 (370)
T PRK08818 217 SIYEDIQFGNP-YVGEMLDRLLAQLQELRALVAQGDDAARARFRAQFLHANA 267 (370)
T ss_pred HHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99999999988 777777777664 4444443 344555 555554
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-20 Score=165.38 Aligned_cols=191 Identities=15% Similarity=0.168 Sum_probs=142.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----CceeecCchhhh---ccCCEEEEeeCc-c
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GVKVLSDNNAVV---EYSDVVVFSVKP-Q 82 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----g~~~~~~~~~~~---~~aDivil~v~~-~ 82 (272)
+|||||+|+||.+|+++|.++|+ +|++| ||++++.+.+.+. ++..+.++.+++ +++|+||+|||+ .
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~----~V~v~-drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~ 75 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF----TVSVY-NRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGA 75 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcH
Confidence 48999999999999999999999 99999 9999999988864 255666777765 468999999987 5
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcCCCCHHHH--HHHhC--CCCEEEEc-cCchhhhcCCceEEEeCCCCCHHHHHHHHHH
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDL--QEWTG--HSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELIGKL 157 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l--~~~~~--~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~l 157 (272)
.++++++++.+++.++++||+++++...+.. .+.+. +.+++.+. .+.+.....|.+++..| +++.++.++++
T Consensus 76 ~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG---~~~a~~~~~p~ 152 (467)
T TIGR00873 76 PVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGG---SAEAWPLVAPI 152 (467)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCC---CHHHHHHHHHH
Confidence 7899999999999999999998765544322 22222 34455432 12334445676555433 78999999999
Q ss_pred hhhcC-C------eEEcCcccchhHHHchHHHHHHHHHHHHHHH---H-HHcCCCHHHHHHHHH
Q 024121 158 FGSVG-K------IWRADEKLFDAITGLSGPAYIFLAIEALADG---G-VAAGLPRELALGLAS 210 (272)
Q Consensus 158 l~~~G-~------~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~---~-~~~Gl~~~~a~~~~~ 210 (272)
|+.++ + .+++++.....+++++.+.+.+..++++.|+ + .+.|+++++..+++.
T Consensus 153 L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~ 216 (467)
T TIGR00873 153 FQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFT 216 (467)
T ss_pred HHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99998 4 2678988888888887444445555555554 3 369999999988883
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-21 Score=138.03 Aligned_cols=105 Identities=57% Similarity=0.896 Sum_probs=97.1
Q ss_pred cCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHH
Q 024121 167 ADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 244 (272)
Q Consensus 167 ~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~ 244 (272)
++|++++.+++++ +|+|++.+++++.+++.+.|++++++++++.+++.|+..++.+++.+|..+++.+++|||+|+++
T Consensus 1 V~E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G~a~ll~~~~~~~~~l~~~v~tPgG~T~~g 80 (107)
T PF14748_consen 1 VDEDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIGAAKLLEESGRSPAELRDEVTTPGGTTIAG 80 (107)
T ss_dssp -SGGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHCSS-HHHHHHHHS-TTSHHHHH
T ss_pred CCHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHhhhccCCCCcHHHH
Confidence 4688999999988 99999999999999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 245 IHELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 245 l~~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
++.|++++|+..+.++++++++|++||
T Consensus 81 l~~L~~~~~~~~~~~a~~aa~~R~~el 107 (107)
T PF14748_consen 81 LEVLEKGGLRAAIMEALEAAVERAKEL 107 (107)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999986
|
... |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=155.41 Aligned_cols=216 Identities=15% Similarity=0.087 Sum_probs=153.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH-----------HHcC-------------ceeecCch
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLSDNN 66 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~ 66 (272)
|+|+|||+|.||++|+..|.++|+ +|++| +|+++..+.. .+.| +..+.+..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~----~V~v~-d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~ 77 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH----EVRLW-DADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLA 77 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC----eeEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHH
Confidence 689999999999999999999999 99999 9998766542 2334 25667777
Q ss_pred hhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeC
Q 024121 67 AVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLG 143 (272)
Q Consensus 67 ~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~ 143 (272)
++++++|+|+.|+|.+ ....++.++.+..+++.++.+.+++.....+++.+. ...++..||..|.... ....++++
T Consensus 78 ~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~-~lveiv~~ 156 (308)
T PRK06129 78 DAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLI-PVVEVVPA 156 (308)
T ss_pred HhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccC-ceEEEeCC
Confidence 8889999999999876 345666777666666666667667777777887765 2457788887665332 24456777
Q ss_pred CCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Q 024121 144 GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTK 222 (272)
Q Consensus 144 ~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~ 222 (272)
..++++.++.++++++.+|+. ++++++..+.+ +...+...+.|++. .+.+.|+++++..+++..++..++.+
T Consensus 157 ~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i---~nrl~~a~~~EA~~-l~~~g~~~~~~id~~~~~~~g~~~~~--- 229 (308)
T PRK06129 157 PWTAPATLARAEALYRAAGQSPVRLRREIDGFV---LNRLQGALLREAFR-LVADGVASVDDIDAVIRDGLGLRWSF--- 229 (308)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEecCCCccHH---HHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHhccCCCccC---
Confidence 778999999999999999965 77776554432 12223344556654 56788899999998887665443222
Q ss_pred cCCCHHHHHHhcCCCcchHH
Q 024121 223 SGKHPGQLKDDVASPGGTTI 242 (272)
Q Consensus 223 ~~~~~~~l~~~~~~~~g~t~ 242 (272)
..|-.+.+. ++|+|...
T Consensus 230 --~gp~~~~d~-~~~~g~~~ 246 (308)
T PRK06129 230 --MGPFETIDL-NAPGGVAD 246 (308)
T ss_pred --cCHHHHHhc-cccccHHH
Confidence 235455553 45655443
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=148.33 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=127.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH-----------HHHHcC-------------ceeecC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-----------AFESIG-------------VKVLSD 64 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~-----------~l~~~g-------------~~~~~~ 64 (272)
+++||+|||+|.||.+++..+.++|+ +|++| |+++++++ .+.+.| +..+.+
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~----~V~~~-d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~ 76 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGY----DVVMV-DISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTD 76 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCC----ceEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 45789999999999999999999999 99999 99998774 233333 344555
Q ss_pred chhhhccCCEEEEeeCcccH--HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEE
Q 024121 65 NNAVVEYSDVVVFSVKPQVV--KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~~~--~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~ 141 (272)
.+ .+++||+||+|+|++.. .+++.++.++++++++++|.+++++...+++.++ ..++++.||+.|.....+.. ++
T Consensus 77 ~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~ve-v~ 154 (282)
T PRK05808 77 LD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVE-II 154 (282)
T ss_pred HH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEE-Ee
Confidence 54 47899999999987643 5888999998989998889899999999988875 35899999999988877775 66
Q ss_pred eCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024121 142 LGGTATEEDGELIGKLFGSVGKI-WRADE 169 (272)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 169 (272)
++..++++..+.+.++++.+|+. +++.+
T Consensus 155 ~g~~t~~e~~~~~~~l~~~lGk~pv~~~d 183 (282)
T PRK05808 155 RGLATSDATHEAVEALAKKIGKTPVEVKN 183 (282)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeeEEecC
Confidence 78889999999999999999976 65543
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-18 Score=149.29 Aligned_cols=208 Identities=21% Similarity=0.196 Sum_probs=145.0
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhCCCCCCCcEEEEeCCCHH-----HHHHHHHcCceeecCc
Q 024121 11 FILGFIGAGKM--------------------AESIAKGVAKSGVLPPDRICTAVHSNLK-----RRDAFESIGVKVLSDN 65 (272)
Q Consensus 11 ~~IgiIG~G~m--------------------G~~la~~l~~~g~~~~~~V~v~~~r~~~-----~~~~l~~~g~~~~~~~ 65 (272)
|||.+.|+||- |.+||.+|.++|| +|++| +|+++ +.+.+.+.|+.++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~----~V~v~-Dr~~~~l~~~~~~~l~~~Gi~~asd~ 75 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGH----DVVLA-EPNRSILSEELWKKVEDAGVKVVSDD 75 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCC----eEEEE-ECCHHHhhHHHHHHHHHCCCEEeCCH
Confidence 68889998874 7899999999999 99999 99987 4455666888888888
Q ss_pred hhhhccCCEEEEeeCccc-HHHHHHHhchhcCCCCEEEEEcCCCCHH----HHHHHhC-CCCEEEEccCchhhh----cC
Q 024121 66 NAVVEYSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVKLK----DLQEWTG-HSRFIRVMPNTPSAV----GE 135 (272)
Q Consensus 66 ~~~~~~aDivil~v~~~~-~~~v~~~l~~~l~~~~~iis~~~~~~~~----~l~~~~~-~~~~~~~~p~~~~~~----~~ 135 (272)
.++++++|+||+|+|+.. +++++.++.++++++++|++++++ +.. .+++.++ ..+.+++++.+|..+ ..
T Consensus 76 ~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~-~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g 154 (342)
T PRK12557 76 AEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTV-SPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQH 154 (342)
T ss_pred HHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCC-CHHHHHHHHHHHhcccccccCeeecCCccccccccc
Confidence 888999999999999887 899999999999899999987554 443 3444443 123344444444322 33
Q ss_pred CceEEEeC-----CCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHH---HHHHcCCCHH-HH
Q 024121 136 AATVMSLG-----GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALAD---GGVAAGLPRE-LA 205 (272)
Q Consensus 136 g~~~~~~~-----~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~Gl~~~-~a 205 (272)
+.++++.+ ...+++.+++++++|+.+|.. +++++ .....+++..+.+......++.+ .+++.|.+++ .+
T Consensus 155 ~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~-g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~ 233 (342)
T PRK12557 155 GHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPA-DVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMI 233 (342)
T ss_pred hheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 44555422 234788899999999999964 66665 33333333322222222333333 3567776654 45
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 024121 206 LGLASQTVLGAASMVTKSGK 225 (272)
Q Consensus 206 ~~~~~~~~~g~~~~~~~~~~ 225 (272)
.+++.+++.+++.++.+++.
T Consensus 234 ~~~~~~~~~~~a~l~~~~~~ 253 (342)
T PRK12557 234 EKQILMTLQTMASLVETSGV 253 (342)
T ss_pred HHHHHHHHHHHHHHHHHhCh
Confidence 66889999999999876543
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-18 Score=161.97 Aligned_cols=236 Identities=16% Similarity=0.154 Sum_probs=159.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhh-ccCCEEEEeeCcccHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV-EYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~aDivil~v~~~~~~~v~ 88 (272)
.|+|+|||+|+||.+++++|.+.|+ +|++| +|+... +...+.|+....+..+++ .++|+||+|||++.+.+++
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~----~V~~~-dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl 125 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGH----TVLAH-SRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVL 125 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-eCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHH
Confidence 4799999999999999999999998 99999 998543 445557887777777755 5699999999999999999
Q ss_pred HHhc-hhcCCCCEEEEEcCCCCH---HHHHHHhC-CCCEEEEccCchhhhc----CCceEEEe----CC-CCCHHHHHHH
Q 024121 89 MQIR-PLLSRKKLLVSVAAGVKL---KDLQEWTG-HSRFIRVMPNTPSAVG----EAATVMSL----GG-TATEEDGELI 154 (272)
Q Consensus 89 ~~l~-~~l~~~~~iis~~~~~~~---~~l~~~~~-~~~~~~~~p~~~~~~~----~g~~~~~~----~~-~~~~~~~~~v 154 (272)
.++. ++++++++|+|+. +++. +.+.+.++ +.++++.||....... .+...++. +. ....+..+.+
T Consensus 126 ~~l~~~~l~~g~iVvDv~-SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (667)
T PLN02712 126 KSLPLQRLKRNTLFVDVL-SVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSF 204 (667)
T ss_pred HhhhhhcCCCCeEEEECC-CCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHH
Confidence 9886 5678899888874 4443 34555555 4579999997533211 22223332 11 1123446677
Q ss_pred HHHhhhcCC-eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 024121 155 GKLFGSVGK-IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLP---RELALGLASQTVLGAASMVTKSGKHPG 228 (272)
Q Consensus 155 ~~ll~~~G~-~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~---~~~a~~~~~~~~~g~~~~~~~~~~~~~ 228 (272)
+++|+.+|. .+.++.++||.+++.+ .|+++...+..+.. ....+. .+..++++ .+++ +.+|.
T Consensus 205 ~~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~la~~L~~~~~--~~~~~~~~~~~~~l~l~-------~Ria---~~~p~ 272 (667)
T PLN02712 205 LEVFEREGCKMVEMSCTEHDKYAAESQFITHTVGRVLEMLKL--ESTPINTKGYESLLDLV-------ENTC---GDSFD 272 (667)
T ss_pred HHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccccCCccHHHHHHHH-------HHHh---cCCHH
Confidence 899999994 5889999999999887 67665543321110 001111 22222222 4444 35899
Q ss_pred HHHHhcCCCcchHHHHHHHHHhC--CHHHHHHHHHHHHH
Q 024121 229 QLKDDVASPGGTTIAGIHELEKS--GFRGILMNAVVAAA 265 (272)
Q Consensus 229 ~l~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~~~~~~~ 265 (272)
.|.+.+..+. ...+.++.+++. .++..|..-++.-+
T Consensus 273 L~~dI~~~N~-~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 310 (667)
T PLN02712 273 LYYGLFMYNK-NSLEMLERLDLAFEALRKQLFGRLHGVV 310 (667)
T ss_pred HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887 777788887765 55555554444433
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-18 Score=147.64 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=123.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-----------HHHcC------------ceeecC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIG------------VKVLSD 64 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-----------l~~~g------------~~~~~~ 64 (272)
+..+||+|||+|.||.+|+..|+++|+ +|++| |+++++++. +.+.| .....+
T Consensus 2 ~~~~~V~vIG~G~mG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 2 AEIKKVGVVGAGQMGSGIAQLAAAAGM----DVWLL-DSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred CCcCEEEEECCCHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 456789999999999999999999999 99999 999987653 22222 122334
Q ss_pred chhhhccCCEEEEeeC--cccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCC-CCEEEEccCchhhhcCCceEEE
Q 024121 65 NNAVVEYSDVVVFSVK--PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGH-SRFIRVMPNTPSAVGEAATVMS 141 (272)
Q Consensus 65 ~~~~~~~aDivil~v~--~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~-~~~~~~~p~~~~~~~~g~~~~~ 141 (272)
..+.+++||+||+|+| ++....++.++.+.++++++|+|.++++++..+++.+.+ .++++.|+..|..... .+.++
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~-lveiv 155 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMK-LVEII 155 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCc-eEEEe
Confidence 4567899999999998 556677788888888888888888899999998887763 6789998877665443 34566
Q ss_pred eCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024121 142 LGGTATEEDGELIGKLFGSVGKI-WRADE 169 (272)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 169 (272)
++..++++..+.++++|+.+|+. +++.+
T Consensus 156 ~g~~t~~e~~~~~~~ll~~lG~~~~~~~d 184 (295)
T PLN02545 156 RGADTSDEVFDATKALAERFGKTVVCSQD 184 (295)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeeEEecC
Confidence 77788999999999999999976 55544
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-18 Score=149.16 Aligned_cols=148 Identities=19% Similarity=0.254 Sum_probs=114.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------------CceeecCchhhhccCCEE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYSDVV 75 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~aDiv 75 (272)
||||+|||+|.||++|+..|.++|+ +|++| +|++++.+.+.+. ++....+..++++++|+|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 75 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGH----DVTLW-ARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLI 75 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEE
Confidence 3699999999999999999999999 99999 9999888887764 355566777788899999
Q ss_pred EEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-------HHHHHHhCC--CCEEEEccCchhhhcCCc--eEEEeCC
Q 024121 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-------KDLQEWTGH--SRFIRVMPNTPSAVGEAA--TVMSLGG 144 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-------~~l~~~~~~--~~~~~~~p~~~~~~~~g~--~~~~~~~ 144 (272)
|+|||++++++++.++.+.+.+++++|++++|++. +.+++.++. ...+...|+.+.....+. ..+..+
T Consensus 76 i~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~- 154 (325)
T PRK00094 76 LVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIAS- 154 (325)
T ss_pred EEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEe-
Confidence 99999999999999999888889999999888765 334444442 123445677665544442 223333
Q ss_pred CCCHHHHHHHHHHhhhcCCe
Q 024121 145 TATEEDGELIGKLFGSVGKI 164 (272)
Q Consensus 145 ~~~~~~~~~v~~ll~~~G~~ 164 (272)
.+.+..+.+.++|+..|..
T Consensus 155 -~~~~~~~~~~~~l~~~~~~ 173 (325)
T PRK00094 155 -TDEELAERVQELFHSPYFR 173 (325)
T ss_pred -CCHHHHHHHHHHhCCCCEE
Confidence 3678899999999998854
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-19 Score=149.11 Aligned_cols=224 Identities=21% Similarity=0.240 Sum_probs=157.9
Q ss_pred HHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCchhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEE
Q 024121 25 IAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 25 la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis 103 (272)
+|+.|.++|+ ..+|+.| |++++..+...+.|+.-. .+..+.+.++|+||+|||+..+.+++.++.++++++++|++
T Consensus 1 ~A~aL~~~g~--~~~v~g~-d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~D 77 (258)
T PF02153_consen 1 IALALRKAGP--DVEVYGY-DRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTD 77 (258)
T ss_dssp HHHHHHHTTT--TSEEEEE--SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE
T ss_pred ChHHHHhCCC--CeEEEEE-eCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEE
Confidence 5788999983 1288999 999999888877776422 22257789999999999999999999999999999998888
Q ss_pred EcCCCCHH---HHHHHhC-CCCEEEEccCchh-----------hhcCCceEEEeCCCCCHHHHHHHHHHhhhcC-CeEEc
Q 024121 104 VAAGVKLK---DLQEWTG-HSRFIRVMPNTPS-----------AVGEAATVMSLGGTATEEDGELIGKLFGSVG-KIWRA 167 (272)
Q Consensus 104 ~~~~~~~~---~l~~~~~-~~~~~~~~p~~~~-----------~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G-~~~~~ 167 (272)
+ ++++.. .+++.++ +.++++.||.... .......++++....+++..+.++.+++.+| +.+++
T Consensus 78 v-~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 78 V-GSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEM 156 (258)
T ss_dssp ---S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE-
T ss_pred e-CCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEc
Confidence 7 455543 4555555 5789999986432 1123345677777777889999999999999 45889
Q ss_pred CcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHH
Q 024121 168 DEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245 (272)
Q Consensus 168 ~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l 245 (272)
+.+.||..++.+ .|+++.. ++.....+.+.+......+...+|+.+++++. .+|..|.+....+.....+.+
T Consensus 157 ~~eeHD~~~A~vshlpH~~a~---al~~~~~~~~~~~~~~~~~a~~~frd~tRia~---~~p~l~~~I~~~N~~~~~~~l 230 (258)
T PF02153_consen 157 DAEEHDRIMAYVSHLPHLLAS---ALANTLAELSSDDPDILRLAGGGFRDMTRIAS---SDPELWADIFLSNPENLLEAL 230 (258)
T ss_dssp -HHHHHHHHHHHTHHHHHHHH---HHHHHHHHHHHHHHHHHHHGTHHHHHHHGGGG---S-HHHHHHHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCChHHHHhhcchhHHhhccccc---CChHHHHHHHHHCHHHHHHHH
Confidence 999999999987 7776554 33333333444456677888888998887754 589999999888877677888
Q ss_pred HHHHhC--CHHHHHH
Q 024121 246 HELEKS--GFRGILM 258 (272)
Q Consensus 246 ~~l~~~--~~~~~~~ 258 (272)
+.+.+. .++..+.
T Consensus 231 ~~~~~~L~~l~~~l~ 245 (258)
T PF02153_consen 231 DEFIKELNELREALE 245 (258)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 877665 4444443
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-18 Score=145.54 Aligned_cols=156 Identities=21% Similarity=0.258 Sum_probs=122.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------cC-------------ceee
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-------------VKVL 62 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~g-------------~~~~ 62 (272)
+++.+||+|||+|.||.+|+..|.++|+ +|++| ++++++++.+.+ .| +...
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 75 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAGY----DVLLN-DVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA 75 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee
Confidence 3567899999999999999999999999 99999 999987765332 12 3445
Q ss_pred cCchhhhccCCEEEEeeCcc-c-HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceE
Q 024121 63 SDNNAVVEYSDVVVFSVKPQ-V-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATV 139 (272)
Q Consensus 63 ~~~~~~~~~aDivil~v~~~-~-~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~ 139 (272)
.+. +.+++||+||.|+|.+ + .+.++.++.+.++++++++|.+++++...+++.+. ..++++.|+..|.....+. .
T Consensus 76 ~~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~v-e 153 (292)
T PRK07530 76 TDL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLV-E 153 (292)
T ss_pred CCH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceE-E
Confidence 555 4578999999999865 3 45777888888889999998888898888887664 3567888876666555444 4
Q ss_pred EEeCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024121 140 MSLGGTATEEDGELIGKLFGSVGKI-WRADE 169 (272)
Q Consensus 140 ~~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 169 (272)
+..+..++++.++.+.++++.+|+. ++..+
T Consensus 154 i~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d 184 (292)
T PRK07530 154 LIRGIATDEATFEAAKEFVTKLGKTITVAED 184 (292)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 5667778999999999999999975 65544
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=142.45 Aligned_cols=190 Identities=14% Similarity=0.086 Sum_probs=138.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------------cCceeec
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------------IGVKVLS 63 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------------~g~~~~~ 63 (272)
..+||+|||+|.||.+||..|..+|+ +|++| ++++++++++.+ .++..+.
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGF----DVTIY-DISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTT 76 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeC
Confidence 45799999999999999999999999 99999 999876554432 1334567
Q ss_pred CchhhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEE
Q 024121 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~ 140 (272)
+..++++++|+||.|+|.+ ...+++.++.+.+++++++++.+++++...+.+.+. ..++++.||..|... .....+
T Consensus 77 d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~-~~lvev 155 (287)
T PRK08293 77 DLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWK-NNTAEI 155 (287)
T ss_pred CHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCc-CCeEEE
Confidence 7778889999999999865 567888888888888888878778888877777665 357899998777542 344556
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHH
Q 024121 141 SLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALADGGVAAGL-PRELALGLA 209 (272)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl-~~~~a~~~~ 209 (272)
++++.++++.++.+.++++.+|+. +.+..+.++.+..-. +...+.|++. ....|+ ++++...++
T Consensus 156 v~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi---~~~~~~ea~~--l~~~g~a~~~~iD~a~ 221 (287)
T PRK08293 156 MGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSL---LVPFLSAALA--LWAKGVADPETIDKTW 221 (287)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHH---HHHHHHHHHH--HHHcCCCCHHHHHHHH
Confidence 677888999999999999999975 666655444443211 1112223332 334564 566655444
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=142.14 Aligned_cols=151 Identities=24% Similarity=0.341 Sum_probs=119.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------Cc--ee-ecCchhhhccCCEEEEe
Q 024121 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------GV--KV-LSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------g~--~~-~~~~~~~~~~aDivil~ 78 (272)
|||+||| +|+||++++..|.++|+ +|.+| +|++++.+.+.+. |+ .+ ..+..++++++|+||+|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~----~V~v~-~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVila 75 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN----KIIIG-SRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILA 75 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC----EEEEE-EcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEE
Confidence 6899997 89999999999999999 99999 9999887766541 22 12 23556778999999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-----------------HHHHHHhCC-CCEEEEccCchhhhcC-----
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-----------------KDLQEWTGH-SRFIRVMPNTPSAVGE----- 135 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-----------------~~l~~~~~~-~~~~~~~p~~~~~~~~----- 135 (272)
+|++++.+++.++.+.+. +++|||+++|++. +.+++.+++ .++++++|+.+.....
T Consensus 76 vp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~~~~ 154 (219)
T TIGR01915 76 VPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDVDDE 154 (219)
T ss_pred CCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCCCCC
Confidence 999999999998877664 5899999999876 557788876 7899999988765432
Q ss_pred -CceEEEeCCCCCHHHHHHHHHHhhhc-CC-eEEcCc
Q 024121 136 -AATVMSLGGTATEEDGELIGKLFGSV-GK-IWRADE 169 (272)
Q Consensus 136 -g~~~~~~~~~~~~~~~~~v~~ll~~~-G~-~~~~~e 169 (272)
+...+++|+ +++..+.+..+.+.+ |. .+..+.
T Consensus 155 ~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 155 VDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred CCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 233455664 577889999999999 84 465554
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-17 Score=142.59 Aligned_cols=154 Identities=18% Similarity=0.271 Sum_probs=124.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------------cC-------------cee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------------IG-------------VKV 61 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------------~g-------------~~~ 61 (272)
+.+||+|||+|.||.+|+..|.++|+ +|++| |++++.+++..+ .| +..
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 76 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGY----DVTIV-DVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT 76 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe
Confidence 45789999999999999999999999 99999 999987654221 12 123
Q ss_pred ecCchhhhccCCEEEEeeCccc--HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCce
Q 024121 62 LSDNNAVVEYSDVVVFSVKPQV--VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAAT 138 (272)
Q Consensus 62 ~~~~~~~~~~aDivil~v~~~~--~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~ 138 (272)
..+. +.+++||+||+|+|++. ..+++.++.+.++++++++|.+++++...+++.+. ..++++.|+..|.....+..
T Consensus 77 ~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE 155 (291)
T PRK06035 77 STSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIE 155 (291)
T ss_pred eCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEE
Confidence 3343 56789999999998774 57788888888888999999999999999988775 36799999998887766655
Q ss_pred EEEeCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024121 139 VMSLGGTATEEDGELIGKLFGSVGKI-WRADE 169 (272)
Q Consensus 139 ~~~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 169 (272)
+ ..+..++++.++.+.++++.+|+. +++.+
T Consensus 156 v-~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d 186 (291)
T PRK06035 156 V-VRAALTSEETFNTTVELSKKIGKIPIEVAD 186 (291)
T ss_pred E-eCCCCCCHHHHHHHHHHHHHcCCeEEEeCC
Confidence 4 478888999999999999999976 66654
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-17 Score=144.67 Aligned_cols=191 Identities=18% Similarity=0.204 Sum_probs=132.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------C------ceeecCchhhhccCCE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------G------VKVLSDNNAVVEYSDV 74 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------g------~~~~~~~~~~~~~aDi 74 (272)
++|||+|||+|+||++|+..|.++|+ +|++| +|++++.+.+.+. | +..+.++.++++++|+
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G~----~V~~~-~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKGV----PVRLW-ARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 46799999999999999999999999 99999 9999888777653 3 3455677788899999
Q ss_pred EEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCC-----HHHHHHHhCC---CC-EEEEccCchhhhcCCc--eEEEeC
Q 024121 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK-----LKDLQEWTGH---SR-FIRVMPNTPSAVGEAA--TVMSLG 143 (272)
Q Consensus 75 vil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~-----~~~l~~~~~~---~~-~~~~~p~~~~~~~~g~--~~~~~~ 143 (272)
||+|||+++++++++.+ +++.++|++++|+. ...+.+.++. .. .+...|+.+...+.+. ..+..+
T Consensus 78 Vi~~v~~~~~~~v~~~l----~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~ 153 (328)
T PRK14618 78 AVVAVPSKALRETLAGL----PRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVAS 153 (328)
T ss_pred EEEECchHHHHHHHHhc----CcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEe
Confidence 99999999988888654 46778999988875 3455555421 22 3456788777765543 222223
Q ss_pred CCCCHHHHHHHHHHhhhcCCeEEcCcccch----------------hHHHch--HHHHHHHHHHHHHH---HHHHcCCCH
Q 024121 144 GTATEEDGELIGKLFGSVGKIWRADEKLFD----------------AITGLS--GPAYIFLAIEALAD---GGVAAGLPR 202 (272)
Q Consensus 144 ~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~----------------~~~~~~--~~~~~~~~~~~l~~---~~~~~Gl~~ 202 (272)
.+++..+.++++|+..|..++.+++... ....+. .+.....+..++.| .+++.|+++
T Consensus 154 --~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~ 231 (328)
T PRK14618 154 --PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEE 231 (328)
T ss_pred --CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3788899999999999965444433221 111111 11222223333333 467899999
Q ss_pred HHHHHHHH
Q 024121 203 ELALGLAS 210 (272)
Q Consensus 203 ~~a~~~~~ 210 (272)
++++++..
T Consensus 232 ~~~~~~~~ 239 (328)
T PRK14618 232 ATFYGLSG 239 (328)
T ss_pred cchhcCcc
Confidence 99988754
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.2e-19 Score=126.22 Aligned_cols=93 Identities=34% Similarity=0.637 Sum_probs=80.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cCceeec-CchhhhccCCEEEEeeCcccHHHHH
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLS-DNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~-~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
||||||+|+||++|+++|.++|+ .+.+|. ++ +|++++.+++.+ .++.+.. ++.++++++|+||+||||+++.+++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~-~~~~v~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~ 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI-KPHEVIIVS-SRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVL 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS--GGEEEEEE-ESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CceeEEeec-cCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHH
Confidence 79999999999999999999994 444998 55 999999999876 6777665 7899999999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCC
Q 024121 89 MQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~ 107 (272)
.++ +...+++++||+++|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 999 667899999999875
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.8e-17 Score=137.80 Aligned_cols=153 Identities=18% Similarity=0.163 Sum_probs=122.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------c-----------------CceeecCch
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------I-----------------GVKVLSDNN 66 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------~-----------------g~~~~~~~~ 66 (272)
+||+|||+|.||.+||..|.++|+ +|++| |+++++++++.+ . ++..+.+..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 76 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF----QTTLV-DIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLK 76 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHH
Confidence 589999999999999999999999 99999 999988776542 1 234566777
Q ss_pred hhhccCCEEEEeeCccc-H-HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCC-CCEEEEccCchhhhcCCceEEEeC
Q 024121 67 AVVEYSDVVVFSVKPQV-V-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGH-SRFIRVMPNTPSAVGEAATVMSLG 143 (272)
Q Consensus 67 ~~~~~aDivil~v~~~~-~-~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~-~~~~~~~p~~~~~~~~g~~~~~~~ 143 (272)
+++++||+||.|+|.+. + ..++.++.+.+++++++++.++++++..+.+.+.. .++++.|+..|.... ....++++
T Consensus 77 ~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~-~Lve~v~g 155 (288)
T PRK09260 77 AAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKM-KLVELIRG 155 (288)
T ss_pred HhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccC-ceEEEeCC
Confidence 88999999999998764 3 46677788888888877777788999888877653 457788877676543 35556778
Q ss_pred CCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024121 144 GTATEEDGELIGKLFGSVGKI-WRADE 169 (272)
Q Consensus 144 ~~~~~~~~~~v~~ll~~~G~~-~~~~e 169 (272)
+.++++.++.++++++.+|+. +++++
T Consensus 156 ~~t~~~~~~~~~~~l~~lg~~~v~v~d 182 (288)
T PRK09260 156 LETSDETVQVAKEVAEQMGKETVVVNE 182 (288)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 888999999999999999965 66664
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-16 Score=142.50 Aligned_cols=182 Identities=15% Similarity=0.190 Sum_probs=138.4
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----CceeecCchhhhcc---CCEEEEeeCcc-cHHHHHHHh
Q 024121 21 MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GVKVLSDNNAVVEY---SDVVVFSVKPQ-VVKDVAMQI 91 (272)
Q Consensus 21 mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~---aDivil~v~~~-~~~~v~~~l 91 (272)
||+.|+++|+++|| +|.+| ||++++.+.+.+. |+..+.++.++++. +|+||+|||.. .+++|++++
T Consensus 1 MG~~mA~nL~~~G~----~V~v~-nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l 75 (459)
T PRK09287 1 MGKNLALNIASHGY----TVAVY-NRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQL 75 (459)
T ss_pred CcHHHHHHHHhCCC----eEEEE-CCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHH
Confidence 89999999999999 99999 9999999999873 47888899998874 89999999865 689999999
Q ss_pred chhcCCCCEEEEEcCCCCHHHH--HHHhC--CCCEEEE-ccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcC-Ce-
Q 024121 92 RPLLSRKKLLVSVAAGVKLKDL--QEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVG-KI- 164 (272)
Q Consensus 92 ~~~l~~~~~iis~~~~~~~~~l--~~~~~--~~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G-~~- 164 (272)
.+++.++.+||++++....+.. .+.+. +.+++.+ +.+.+.....|.+++..| +++.++.++++|+.++ +.
T Consensus 76 ~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG---~~~a~~~~~piL~~ia~~~~ 152 (459)
T PRK09287 76 LPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGG---QKEAYELVAPILEKIAAKVE 152 (459)
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeC---CHHHHHHHHHHHHHHhhhhc
Confidence 9999999999998665544332 22332 3445543 123344456677655544 7899999999999998 44
Q ss_pred ------EEcCcccchhHHHchHHHHHHHHHHHHHHH---HH-HcCCCHHHHHHHHH
Q 024121 165 ------WRADEKLFDAITGLSGPAYIFLAIEALADG---GV-AAGLPRELALGLAS 210 (272)
Q Consensus 165 ------~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~-~~Gl~~~~a~~~~~ 210 (272)
+++++.....+++++.+.+.+..++++.|+ ++ +.|+++++..+++.
T Consensus 153 ~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 153 DGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred CCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 788988888888887444445555555554 35 48999999988884
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.4e-19 Score=130.15 Aligned_cols=115 Identities=17% Similarity=0.319 Sum_probs=82.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
..+||+|||+|++|.++++.|.++|| .|..+++|++++.+++.. .+.....+..+++.++|+||++|||+.+.++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~----~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~v 84 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH----EVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEV 84 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS----EEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC----eEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHH
Confidence 45899999999999999999999999 886544999888887776 3444445678889999999999999999999
Q ss_pred HHHhchh--cCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEcc
Q 024121 88 AMQIRPL--LSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMP 127 (272)
Q Consensus 88 ~~~l~~~--l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p 127 (272)
.++|... ++++++|+++++..+.+.|+.... ++.+..+||
T Consensus 85 a~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 85 AEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp HHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred HHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 9999876 789999999998888887766443 466667776
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=145.45 Aligned_cols=192 Identities=17% Similarity=0.126 Sum_probs=140.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH-----------HHcC-------------ceeecC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLSD 64 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-----------~~~g-------------~~~~~~ 64 (272)
..++|||||+|.||..||..++.+|+ +|++| |++++.+++. .+.| +..+.+
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~----~V~l~-D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~ 80 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGH----TVLLY-DARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEA 80 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 45789999999999999999999999 99999 9999987663 3344 466667
Q ss_pred chhhhccCCEEEEeeCcc-cHHH-HHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEE
Q 024121 65 NNAVVEYSDVVVFSVKPQ-VVKD-VAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~-~~~~-v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~ 141 (272)
..+ +.+||+||.|++.+ +++. ++.++....++++++.+.++++++..++..+. ..++++.|...|..+. .+..++
T Consensus 81 ~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~-~LvEvv 158 (507)
T PRK08268 81 LAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLM-KLVEVV 158 (507)
T ss_pred HHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccC-eeEEEe
Confidence 655 56999999999865 4554 45667776778888877788999988887665 3568888876666544 355667
Q ss_pred eCCCCCHHHHHHHHHHhhhcCCe-EEcCcc-cchhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 024121 142 LGGTATEEDGELIGKLFGSVGKI-WRADEK-LFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQTV 213 (272)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~ 213 (272)
.+..++++.++.+.++++.+|+. +++++. .+ +....+...+.|++. .+.+.|.++++..+++...+
T Consensus 159 ~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pGf-----i~Nrll~~~~~Ea~~-l~~~g~~~~~~iD~al~~~~ 226 (507)
T PRK08268 159 SGLATDPAVADALYALARAWGKTPVRAKDTPGF-----IVNRAARPYYTEALR-VLEEGVADPATIDAILREAA 226 (507)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceEEecCCCCh-----HHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHhcC
Confidence 77788999999999999999975 666642 21 111112223445543 44566688888887776533
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-16 Score=135.74 Aligned_cols=157 Identities=12% Similarity=0.145 Sum_probs=123.8
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------c---------CceeecCc
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I---------GVKVLSDN 65 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~---------g~~~~~~~ 65 (272)
.+++.+||+|||+|.||+.||..++.+|+ +|.+| |++++..+.+.+ . .+..+.+.
T Consensus 3 ~~~~i~~VaVIGaG~MG~giA~~~a~aG~----~V~l~-D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l 77 (321)
T PRK07066 3 VITDIKTFAAIGSGVIGSGWVARALAHGL----DVVAW-DPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATI 77 (321)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCH
Confidence 34567899999999999999999999999 99999 999876543221 1 12455677
Q ss_pred hhhhccCCEEEEeeCcc-cH-HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEe
Q 024121 66 NAVVEYSDVVVFSVKPQ-VV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSL 142 (272)
Q Consensus 66 ~~~~~~aDivil~v~~~-~~-~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~ 142 (272)
++++++||+|+.|+|.+ ++ .+++.++....+++.++.|.+++++...+++.+. ..+++..||..|...-. ..-+++
T Consensus 78 ~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~p-LVEVv~ 156 (321)
T PRK07066 78 EACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLP-LVEVLG 156 (321)
T ss_pred HHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCc-eEEEeC
Confidence 78889999999999854 34 4667788888888887777778888888888776 36899999877765433 333567
Q ss_pred CCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024121 143 GGTATEEDGELIGKLFGSVGKI-WRAD 168 (272)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~G~~-~~~~ 168 (272)
++.++++..+.+..+++.+|+. +.+.
T Consensus 157 g~~T~~e~~~~~~~f~~~lGk~pV~v~ 183 (321)
T PRK07066 157 GERTAPEAVDAAMGIYRALGMRPLHVR 183 (321)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEeEecC
Confidence 8889999999999999999965 6653
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=138.03 Aligned_cols=136 Identities=20% Similarity=0.243 Sum_probs=101.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
+.|||+|||+|+||++|+..|.++|| +|++| +|++. .++.++++++|+||+|+|++++++++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~----~V~~~-~r~~~-------------~~~~~~~~~advvi~~vp~~~~~~v~ 64 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGH----RVRVW-SRRSG-------------LSLAAVLADADVIVSAVSMKGVRPVA 64 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC----EEEEE-eCCCC-------------CCHHHHHhcCCEEEEECChHHHHHHH
Confidence 46899999999999999999999999 99999 99853 35677888999999999999999999
Q ss_pred HHhchh-cCCCCEEEEEcCCCCHH-------HHHHHhCCCCEEEE-ccCchhhhcCC--ceEEEeCCCCCHHHHHHHHHH
Q 024121 89 MQIRPL-LSRKKLLVSVAAGVKLK-------DLQEWTGHSRFIRV-MPNTPSAVGEA--ATVMSLGGTATEEDGELIGKL 157 (272)
Q Consensus 89 ~~l~~~-l~~~~~iis~~~~~~~~-------~l~~~~~~~~~~~~-~p~~~~~~~~g--~~~~~~~~~~~~~~~~~v~~l 157 (272)
+++.++ +++++++|++++|+..+ .++..+.+.+++.. .|+.+..+..+ ...+..+ .+.+..+.++++
T Consensus 65 ~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag--~~~~~~~~v~~l 142 (308)
T PRK14619 65 EQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSKEIQQGLPAATVVAS--RDLAAAETVQQI 142 (308)
T ss_pred HHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHHHHhcCCCeEEEEEe--CCHHHHHHHHHH
Confidence 988764 67888999988766533 23334444565532 24444443322 2333333 268889999999
Q ss_pred hhhcCCe
Q 024121 158 FGSVGKI 164 (272)
Q Consensus 158 l~~~G~~ 164 (272)
|+..|..
T Consensus 143 l~~~~~~ 149 (308)
T PRK14619 143 FSSERFR 149 (308)
T ss_pred hCCCcEE
Confidence 9999854
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-16 Score=143.27 Aligned_cols=190 Identities=16% Similarity=0.116 Sum_probs=138.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH-----------HHcC-------------ceeecC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLSD 64 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-----------~~~g-------------~~~~~~ 64 (272)
+.+||+|||+|.||..||..++++|+ +|++| |++++.+++. .+.| ++.+.+
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~----~V~l~-d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~ 78 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGH----QVLLY-DIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTD 78 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCC
Confidence 56789999999999999999999999 99999 9999887643 2233 345667
Q ss_pred chhhhccCCEEEEeeCcc-cHH-HHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEE
Q 024121 65 NNAVVEYSDVVVFSVKPQ-VVK-DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~-~~~-~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~ 141 (272)
+++ +.+||+||.|+|.+ +++ .++.++....+++.++.+.++++++..+.+.+. ..++++.|...|..+. ....+.
T Consensus 79 ~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~-~LvEvv 156 (503)
T TIGR02279 79 LHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVM-ALVEVV 156 (503)
T ss_pred HHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccC-ceEEEe
Confidence 655 57999999999864 454 556677777788888877888889888877765 3578888877666543 456677
Q ss_pred eCCCCCHHHHHHHHHHhhhcCCe-EEcCcc-cchhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 024121 142 LGGTATEEDGELIGKLFGSVGKI-WRADEK-LFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQ 211 (272)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~ 211 (272)
.|..++++.++.+.++++.+|+. +++++. .+ +....+...+.|++. .+.+.+.++++..+++..
T Consensus 157 ~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~Nrl~~~~~~EA~~-l~e~g~a~~~~ID~al~~ 222 (503)
T TIGR02279 157 SGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVNRVARPYYAEALR-ALEEQVAAPAVLDAALRD 222 (503)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHh
Confidence 78888999999999999999975 666542 21 111122223344443 345555788877776654
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-15 Score=127.43 Aligned_cols=206 Identities=21% Similarity=0.205 Sum_probs=140.7
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-----HHHHHcCceeecCc
Q 024121 11 FILGFIGAGKM--------------------AESIAKGVAKSGVLPPDRICTAVHSNLKRR-----DAFESIGVKVLSDN 65 (272)
Q Consensus 11 ~~IgiIG~G~m--------------------G~~la~~l~~~g~~~~~~V~v~~~r~~~~~-----~~l~~~g~~~~~~~ 65 (272)
|||.+.|+||- |++||++|.++|| +|++| ||++++. +.+.+.|+..+.++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh----eV~V~-Drnrsa~e~e~~e~LaeaGA~~AaS~ 75 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH----DVVLA-EPNREFMSDDLWKKVEDAGVKVVSDD 75 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC----EEEEE-eCChhhhhhhhhHHHHHCCCeecCCH
Confidence 68899999874 7899999999999 99999 9987654 35777899998899
Q ss_pred hhhhccCCEEEEeeCcc-cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC--------CCCEEEEccC-chhhhcC
Q 024121 66 NAVVEYSDVVVFSVKPQ-VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG--------HSRFIRVMPN-TPSAVGE 135 (272)
Q Consensus 66 ~~~~~~aDivil~v~~~-~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~--------~~~~~~~~p~-~~~~~~~ 135 (272)
.++++++|+||+|+|.. ++++++.++.+++++|++||++ ++++++.+.+.+. +..+..+||. .|..-++
T Consensus 76 aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~-STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~ 154 (341)
T TIGR01724 76 KEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNT-CTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQH 154 (341)
T ss_pred HHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEEC-CCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCC
Confidence 99999999999999876 4789988888889999999986 5677665544332 2456677774 3444445
Q ss_pred CceEEEe----C-CCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHH---HH-HHcCCCHHHH
Q 024121 136 AATVMSL----G-GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALAD---GG-VAAGLPRELA 205 (272)
Q Consensus 136 g~~~~~~----~-~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~-~~~Gl~~~~a 205 (272)
+..++.. + .-.++++.+.+-++.+..++. +.++.+....+.-++ ....+....++.+ .+ +-.|-|.+.+
T Consensus 155 ~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~-s~vta~~~~gil~y~~~~t~i~~ap~~~~ 233 (341)
T TIGR01724 155 GHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMG-SLVTAVALAGVLDYYYVGTQIINAPKEMI 233 (341)
T ss_pred ceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHH-HHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4444321 1 124788999999999999965 777765433332111 1111111112111 22 3466677777
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 024121 206 LGLASQTVLGAASMVTKS 223 (272)
Q Consensus 206 ~~~~~~~~~g~~~~~~~~ 223 (272)
.+.+..++...+.++.++
T Consensus 234 ~~~~~~~l~~~a~l~~~~ 251 (341)
T TIGR01724 234 EKQILMTLQTMASLVETS 251 (341)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 777766666666666543
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-16 Score=140.56 Aligned_cols=189 Identities=18% Similarity=0.224 Sum_probs=130.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cC-ceeecCchhhhc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE 70 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~ 70 (272)
|||+|||+|.||.++|..|.++|| +|++| |+++++.+.+.+ .| +..+.+..++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~----~V~~~-d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~ 75 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGH----EVTGV-DIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR 75 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCC----eEEEE-ECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence 589999999999999999999999 99999 999998877664 13 456667778889
Q ss_pred cCCEEEEeeCcc----------cHHHHHHHhchhcCCCCEEEEEcCCCCH---HHHH-HHhC---CC----C-EEEEccC
Q 024121 71 YSDVVVFSVKPQ----------VVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQ-EWTG---HS----R-FIRVMPN 128 (272)
Q Consensus 71 ~aDivil~v~~~----------~~~~v~~~l~~~l~~~~~iis~~~~~~~---~~l~-~~~~---~~----~-~~~~~p~ 128 (272)
++|+||+|||.. .+.++++++.+.++++++||+.+ +++. +.+. ..+. +. . .+...|.
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S-Tv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe 154 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES-TVPPGTTEEVVKPILERASGLKLGEDFYLAYNPE 154 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC-cCCCCchHHHHHHHHHhhcCCCCCCCceEEECCC
Confidence 999999999854 37777888888888999988754 4432 2332 2221 11 1 1223332
Q ss_pred chhhhcCCce--------EEEeCCCCCHHHHHHHHHHhhhcC-C-eEEcCcccchhHHHchHHHHHHHHH---HHHHHHH
Q 024121 129 TPSAVGEAAT--------VMSLGGTATEEDGELIGKLFGSVG-K-IWRADEKLFDAITGLSGPAYIFLAI---EALADGG 195 (272)
Q Consensus 129 ~~~~~~~g~~--------~~~~~~~~~~~~~~~v~~ll~~~G-~-~~~~~e~~~~~~~~~~~~~~~~~~~---~~l~~~~ 195 (272)
....|.. .++.| .+++..+.++++++.++ . .++.++......+++..+.|....+ ..+...+
T Consensus 155 ---~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la 229 (411)
T TIGR03026 155 ---FLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARIC 229 (411)
T ss_pred ---cCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223321 33334 37889999999999997 3 4666666656667766444433322 2333356
Q ss_pred HHcCCCHHHHHHHHH
Q 024121 196 VAAGLPRELALGLAS 210 (272)
Q Consensus 196 ~~~Gl~~~~a~~~~~ 210 (272)
++.|+|.++..+++.
T Consensus 230 ~~~GiD~~~v~~~~~ 244 (411)
T TIGR03026 230 EALGIDVYEVIEAAG 244 (411)
T ss_pred HHhCCCHHHHHHHhC
Confidence 799999998877765
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-15 Score=131.89 Aligned_cols=155 Identities=16% Similarity=0.144 Sum_probs=119.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc---------C------ceeecCchhhhccC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---------G------VKVLSDNNAVVEYS 72 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~---------g------~~~~~~~~~~~~~a 72 (272)
..+|||+|||+|+||++++..|.++| .+.+| .|+++..+.+.+. + +....+..++++++
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-----~v~l~-~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~a 78 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-----PTLQW-VRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCA 78 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-----CEEEE-eCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcC
Confidence 34589999999999999999999987 47889 8999888777652 1 23455666778899
Q ss_pred CEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-------HHHHHHhCCCC-EEEEccCchhhhcCCceE--EEe
Q 024121 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-------KDLQEWTGHSR-FIRVMPNTPSAVGEAATV--MSL 142 (272)
Q Consensus 73 Divil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-------~~l~~~~~~~~-~~~~~p~~~~~~~~g~~~--~~~ 142 (272)
|+||+|||+++++++++++.+++++++.+|++++|+.. +.+++.+++.+ .+...|+.+..+..|... +..
T Consensus 79 DlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via 158 (341)
T PRK12439 79 DVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLA 158 (341)
T ss_pred CEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEE
Confidence 99999999999999999999999888899999999975 46666666333 456679988887777632 222
Q ss_pred CCCCCHHHHHHHHHHhhhcCCeEEcCcc
Q 024121 143 GGTATEEDGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~G~~~~~~e~ 170 (272)
. .+++..+.++.+|+.-+-.++.+++
T Consensus 159 ~--~~~~~~~~v~~lf~~~~~~v~~s~D 184 (341)
T PRK12439 159 M--PDQHLATRLSPLFRTRRFRVYTTDD 184 (341)
T ss_pred e--CCHHHHHHHHHHhCCCCEEEEEcCc
Confidence 2 2567778899999887744454544
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-15 Score=127.56 Aligned_cols=154 Identities=19% Similarity=0.272 Sum_probs=118.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------------CceeecCchhhhccCCEE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYSDVV 75 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~aDiv 75 (272)
++||+|||.|+||+++|.-|.++|| +|.+| .|+++..+++... ++..+.|..++++++|+|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~----~V~lw-~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~i 75 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGH----EVRLW-GRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADII 75 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCC----eeEEE-ecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEE
Confidence 4789999999999999999999999 99999 9999888777651 234567888999999999
Q ss_pred EEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-------HHHHHHhCCCCEE-EEccCchhhhcCCceE-E-EeCCC
Q 024121 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-------KDLQEWTGHSRFI-RVMPNTPSAVGEAATV-M-SLGGT 145 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-------~~l~~~~~~~~~~-~~~p~~~~~~~~g~~~-~-~~~~~ 145 (272)
+++||.+.+++++.++.++++++..++++++|+.. +.+++.++..++. -.-|++..++.++... + ..+
T Consensus 76 v~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas-- 153 (329)
T COG0240 76 VIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVAS-- 153 (329)
T ss_pred EEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEec--
Confidence 99999999999999999899999999999999854 3345556643332 2347887777776532 2 222
Q ss_pred CCHHHHHHHHHHhhhcCCeEEcCcc
Q 024121 146 ATEEDGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 146 ~~~~~~~~v~~ll~~~G~~~~~~e~ 170 (272)
.+++..+.++.+|+.=--.++.+++
T Consensus 154 ~d~~~a~~v~~~f~~~~Frvy~~~D 178 (329)
T COG0240 154 NDQEAAEKVQALFSSPYFRVYTSTD 178 (329)
T ss_pred CCHHHHHHHHHHhCCCcEEEEecCc
Confidence 3778888888988762222444554
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-15 Score=128.31 Aligned_cols=153 Identities=20% Similarity=0.225 Sum_probs=119.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-----------HHHcC-------------ceeecCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIG-------------VKVLSDN 65 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-----------l~~~g-------------~~~~~~~ 65 (272)
+.||+|||+|.||..||..++.+|+ +|++| |++++.+++ +.+.| ++.+.+.
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~ 79 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGV----DVLVF-ETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL 79 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH
Confidence 3589999999999999999999999 99999 999988765 33333 2355666
Q ss_pred hhhhccCCEEEEeeCcc-cHH-HHHHHhchhc-CCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEE
Q 024121 66 NAVVEYSDVVVFSVKPQ-VVK-DVAMQIRPLL-SRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (272)
Q Consensus 66 ~~~~~~aDivil~v~~~-~~~-~v~~~l~~~l-~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~ 141 (272)
+.+++||+||.|+|.+ +++ +++..+.... +++++++|.+++++...++.... ..++++.|+..|....... -+.
T Consensus 80 -~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lv-Elv 157 (286)
T PRK07819 80 -GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLV-ELV 157 (286)
T ss_pred -HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceE-EEe
Confidence 5589999999999865 454 5556666666 78999999999999998887665 3578888887776655444 445
Q ss_pred eCCCCCHHHHHHHHHHhh-hcCCe-EEcCc
Q 024121 142 LGGTATEEDGELIGKLFG-SVGKI-WRADE 169 (272)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~-~~G~~-~~~~e 169 (272)
++..++++.++.+.+++. .+|+. +.+.+
T Consensus 158 ~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d 187 (286)
T PRK07819 158 PTLVTSEATVARAEEFASDVLGKQVVRAQD 187 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCceEecC
Confidence 677889999999999988 69965 66654
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-15 Score=133.72 Aligned_cols=148 Identities=18% Similarity=0.221 Sum_probs=105.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-----------------ecCchhhhccC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----------------LSDNNAVVEYS 72 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----------------~~~~~~~~~~a 72 (272)
+|||+|||+|.||++++..|.++|+ +|++| +|++. .+.+.+.|..+ ..+ .+.+.++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~----~V~~~-~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 74 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGA----DVTLI-GRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTD-PAALATA 74 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCC----cEEEE-ecHHH-HHHHHhcCceeecCCCcceecccceeEeccC-hhhccCC
Confidence 4789999999999999999999999 99999 99753 45555545432 223 3557899
Q ss_pred CEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-HHHHHHhCCCCEEEE-cc-----Cchhh---hcCCceEEEe
Q 024121 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRV-MP-----NTPSA---VGEAATVMSL 142 (272)
Q Consensus 73 Divil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-~~l~~~~~~~~~~~~-~p-----~~~~~---~~~g~~~~~~ 142 (272)
|+||+|||+++..++++++.+.++++++|+++++|+.. +.+++.++..+++.. .| ..|.. ...|...+
T Consensus 75 D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~-- 152 (341)
T PRK08229 75 DLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALAI-- 152 (341)
T ss_pred CEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceEe--
Confidence 99999999999999999999988899999999999874 667777764333322 11 11211 12333322
Q ss_pred CCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024121 143 GGTATEEDGELIGKLFGSVGKI-WRADE 169 (272)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~G~~-~~~~e 169 (272)
+. .+..+.+.++|+..|.. .+.++
T Consensus 153 ~~---~~~~~~~~~~l~~~g~~~~~~~d 177 (341)
T PRK08229 153 EA---SPALRPFAAAFARAGLPLVTHED 177 (341)
T ss_pred cC---CchHHHHHHHHHhcCCCceecch
Confidence 22 24568899999998844 54444
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-14 Score=116.40 Aligned_cols=218 Identities=16% Similarity=0.190 Sum_probs=150.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhc---cCCEEEEeeCcc-cHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE---YSDVVVFSVKPQ-VVKD 86 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~---~aDivil~v~~~-~~~~ 86 (272)
|+||.||+|+||..|+++|++.|| +|++| |+|++..+.++..|+..+.++.+.+. ...+|.++||.. .+.+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~gh----dvV~y-D~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~ 75 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGH----DVVGY-DVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDA 75 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCC----eEEEE-cCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHH
Confidence 789999999999999999999999 99999 99999999999989887777766544 678999999987 6789
Q ss_pred HHHHhchhcCCCCEEEEEcCCCCHHHHHH--HhC--CCCEEEEccC-chhhhcCCceEEEeCCCCCHHHHHHHHHHhhhc
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVKLKDLQE--WTG--HSRFIRVMPN-TPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~~~~l~~--~~~--~~~~~~~~p~-~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~ 161 (272)
+++++.+.+.++.+||+--++.-.+.+++ .+. +.+++.+-.. .+.-...|...+..| +.+.++.+.|+|+.+
T Consensus 76 vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG---~~~a~~~~~pif~~l 152 (300)
T COG1023 76 VIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGG---DEEAVERLEPIFKAL 152 (300)
T ss_pred HHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecC---cHHHHHHHHHHHHhh
Confidence 99999999999999998655443444443 222 3455544222 222235677777765 789999999999998
Q ss_pred CC--e--EEcCcccchhHHHch--HHHHHHHHHHHHHH---HHHH--cCCCHHHHHHHHHHH-HHHHH-----HHHHhcC
Q 024121 162 GK--I--WRADEKLFDAITGLS--GPAYIFLAIEALAD---GGVA--AGLPRELALGLASQT-VLGAA-----SMVTKSG 224 (272)
Q Consensus 162 G~--~--~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~---~~~~--~Gl~~~~a~~~~~~~-~~g~~-----~~~~~~~ 224 (272)
.. . .++++..-..+.+.+ +.-| .++++++| ..++ ..+|.++..++...+ ..+++ .-+.+..
T Consensus 153 A~ge~Gyl~~Gp~GsGHfvKMVHNGIEY--GmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d 230 (300)
T COG1023 153 APGEDGYLYCGPSGSGHFVKMVHNGIEY--GMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKD 230 (300)
T ss_pred CcCcCccccccCCCcchhHHHHhccHHH--HHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhC
Confidence 63 2 467888777777776 3322 33444443 2333 345566555544422 22232 2222333
Q ss_pred CCHHHHHHhcCCCc
Q 024121 225 KHPGQLKDDVASPG 238 (272)
Q Consensus 225 ~~~~~l~~~~~~~~ 238 (272)
-+.+.+.+.+.+.+
T Consensus 231 ~~L~q~~g~v~dSG 244 (300)
T COG1023 231 PDLDQISGRVSDSG 244 (300)
T ss_pred CCHHHhcCeeccCC
Confidence 45667777776644
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-16 Score=137.93 Aligned_cols=191 Identities=15% Similarity=0.112 Sum_probs=126.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-------------------CceeecCchhhh
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-------------------GVKVLSDNNAVV 69 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-------------------g~~~~~~~~~~~ 69 (272)
.+|||+|||+|.||.+||.+|.++|| +|++| |+++++.+.+..- |.....+ .+
T Consensus 2 ~~~kI~VIGlG~~G~~~A~~La~~G~----~V~~~-D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~---~~ 73 (415)
T PRK11064 2 SFETISVIGLGYIGLPTAAAFASRQK----QVIGV-DINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT---TP 73 (415)
T ss_pred CccEEEEECcchhhHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec---cc
Confidence 46899999999999999999999999 99999 9999998876431 2111111 13
Q ss_pred ccCCEEEEeeCc----------ccHHHHHHHhchhcCCCCEEEEEcCCCC---HHHHHHHhC----C--CC---------
Q 024121 70 EYSDVVVFSVKP----------QVVKDVAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTG----H--SR--------- 121 (272)
Q Consensus 70 ~~aDivil~v~~----------~~~~~v~~~l~~~l~~~~~iis~~~~~~---~~~l~~~~~----~--~~--------- 121 (272)
++||+||+|||. ..+.++++++.++++++++||..+ +++ .+.+...+. + .+
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~S-Tv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILES-TSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeC-CCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 489999999986 467778888999999999988653 333 333433221 0 01
Q ss_pred EEEEcc-----CchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCC-eEEcCcccchhHHHchHHHHHHHH---HHHHH
Q 024121 122 FIRVMP-----NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLSGPAYIFLA---IEALA 192 (272)
Q Consensus 122 ~~~~~p-----~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~-~~~~~e~~~~~~~~~~~~~~~~~~---~~~l~ 192 (272)
.+...| +.......-...+..| .+++..+.++++++.++. .+++++......++++.+.|...- +..+.
T Consensus 153 ~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~ 230 (415)
T PRK11064 153 NIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELS 230 (415)
T ss_pred EEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011222 1111111112233444 378889999999999985 466666666677777644444333 33334
Q ss_pred HHHHHcCCCHHHHHHHHH
Q 024121 193 DGGVAAGLPRELALGLAS 210 (272)
Q Consensus 193 ~~~~~~Gl~~~~a~~~~~ 210 (272)
..+++.|+|.++..+.+.
T Consensus 231 ~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 231 LICADQGINVWELIRLAN 248 (415)
T ss_pred HHHHHhCCCHHHHHHHhc
Confidence 456799999998877654
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-15 Score=129.42 Aligned_cols=153 Identities=17% Similarity=0.274 Sum_probs=110.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-----------ecCchhhhccCCEEEEee
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----------LSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----------~~~~~~~~~~aDivil~v 79 (272)
|||+|||+|+||+.++..|.++|+ +|+++ +|++++.+.+.+.|..+ ..+..++ +++|+||+||
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH----DVTLV-ARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEec
Confidence 689999999999999999999999 99999 99888888777756532 2334443 8899999999
Q ss_pred CcccHHHHHHHhchhcCCCCEEEEEcCCCCH-HHHHHHhCCCCEEE---------EccCchhhhcCCceEEEeCCCCCHH
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIR---------VMPNTPSAVGEAATVMSLGGTATEE 149 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-~~l~~~~~~~~~~~---------~~p~~~~~~~~g~~~~~~~~~~~~~ 149 (272)
|+.+++++++++.+++.++++||++.+|+.. +.+.+.++...++. ..|+.....+.+...+...+. +.+
T Consensus 75 k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~-~~~ 153 (304)
T PRK06522 75 KAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDG-ESA 153 (304)
T ss_pred ccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCC-CcH
Confidence 9999999999999988888899999999974 66777666333332 223333333444444432221 224
Q ss_pred HHHHHHHHhhhcCCeEEcCcc
Q 024121 150 DGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 150 ~~~~v~~ll~~~G~~~~~~e~ 170 (272)
..+.+.++|+..|..+...++
T Consensus 154 ~~~~l~~~l~~~~~~~~~~~d 174 (304)
T PRK06522 154 AAEALADLLNAAGLDVEWSPD 174 (304)
T ss_pred HHHHHHHHHHhcCCCCCCChH
Confidence 467788888887755444443
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.8e-15 Score=128.35 Aligned_cols=153 Identities=13% Similarity=0.215 Sum_probs=106.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--C------------ceeecCchhhh-ccCCEE
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--G------------VKVLSDNNAVV-EYSDVV 75 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--g------------~~~~~~~~~~~-~~aDiv 75 (272)
|||+|||+|+||++++..|.++|+ +|.+| +|+++..+.+.+. + +....+..+.+ .++|+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~----~V~l~-~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dli 75 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKI----SVNLW-GRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCI 75 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC----eEEEE-ecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEE
Confidence 589999999999999999999999 99999 9998887777652 1 22334555555 589999
Q ss_pred EEeeCcccHHHHHHHhch-hcCCCCEEEEEcCCCCH-------HHHHHHhCCCCEEE-EccCchhhhcCCc-e-EEEeCC
Q 024121 76 VFSVKPQVVKDVAMQIRP-LLSRKKLLVSVAAGVKL-------KDLQEWTGHSRFIR-VMPNTPSAVGEAA-T-VMSLGG 144 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~-~l~~~~~iis~~~~~~~-------~~l~~~~~~~~~~~-~~p~~~~~~~~g~-~-~~~~~~ 144 (272)
|+|||+++++++++++.+ ++.+++.+++.++|+.. +.+.+.++..++.. .-|+.......+. + +...+
T Consensus 76 iiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~- 154 (326)
T PRK14620 76 ILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAG- 154 (326)
T ss_pred EEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEec-
Confidence 999999999999999998 88888888888899854 55666666444432 2344333333332 2 22233
Q ss_pred CCCHHHHHHHHHHhhhcCCeEEcCcc
Q 024121 145 TATEEDGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 145 ~~~~~~~~~v~~ll~~~G~~~~~~e~ 170 (272)
.+.+..+.+.++|+.-+-..+.+++
T Consensus 155 -~~~~~~~~l~~~l~~~~~~~~~~~D 179 (326)
T PRK14620 155 -QNETLGSSLISKLSNENLKIIYSQD 179 (326)
T ss_pred -CCHHHHHHHHHHHCCCCeEEEecCc
Confidence 2444556666666655544444554
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=120.40 Aligned_cols=151 Identities=21% Similarity=0.337 Sum_probs=112.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHHHHH-cCce-eecCchhhhccCCEEEEeeCcccHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFES-IGVK-VLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~~-~g~~-~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
+|+|+|+|+|+||++++++|.++|| +|.+- +|+ +++.+.+.+ .+.. ...+++++++.+|+||++||-+.+.+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~----eV~ig-s~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~ 75 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGH----EVIIG-SSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPD 75 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCC----eEEEe-cCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHh
Confidence 5899999999999999999999999 99988 554 444444444 3332 23567888999999999999999999
Q ss_pred HHHHhchhcCCCCEEEEEcCCCC-----------------HHHHHHHhCCCCEEEEccCchhhh------c-CCceEEEe
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVK-----------------LKDLQEWTGHSRFIRVMPNTPSAV------G-EAATVMSL 142 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~-----------------~~~l~~~~~~~~~~~~~p~~~~~~------~-~g~~~~~~ 142 (272)
++.++...+. +++|||.++++. .+.+++.+++.++++.+-+.+... . ....++++
T Consensus 76 v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~va 154 (211)
T COG2085 76 VLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVA 154 (211)
T ss_pred HHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEe
Confidence 9999988774 899999888631 235667777777877655544322 1 12334455
Q ss_pred CCCCCHHHHHHHHHHhhhcCC-eEEcC
Q 024121 143 GGTATEEDGELIGKLFGSVGK-IWRAD 168 (272)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~G~-~~~~~ 168 (272)
|+ |.+..+.+..+.+.+|- .+-.+
T Consensus 155 gD--D~~Ak~~v~~L~~~iG~~~ld~G 179 (211)
T COG2085 155 GD--DAEAKAVVAELAEDIGFRPLDAG 179 (211)
T ss_pred cC--cHHHHHHHHHHHHhcCcceeecc
Confidence 64 78889999999999994 45554
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=120.10 Aligned_cols=149 Identities=17% Similarity=0.248 Sum_probs=109.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH------------------------cCceeecCchh
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES------------------------IGVKVLSDNNA 67 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~------------------------~g~~~~~~~~~ 67 (272)
||+|||+|.||..||..++.+|+ +|.+| +++++.++...+ ..+....+.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~----~V~l~-d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~ 75 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY----EVTLY-DRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEE 75 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS----EEEEE--SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGG
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC----cEEEE-ECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHH
Confidence 69999999999999999999999 99999 999986543221 13456678777
Q ss_pred hhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCC
Q 024121 68 VVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGG 144 (272)
Q Consensus 68 ~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~ 144 (272)
+. +||+||-|+|.+ .-++++.++....++++++.|.++++++..+...++ ..+++++|+..|..... ..=+++++
T Consensus 76 ~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~-lVEvv~~~ 153 (180)
T PF02737_consen 76 AV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMP-LVEVVPGP 153 (180)
T ss_dssp GC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT---EEEEEE-T
T ss_pred Hh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCc-eEEEeCCC
Confidence 66 999999999754 346788999988899999999999999999988776 36899999877765333 33356778
Q ss_pred CCCHHHHHHHHHHhhhcCCe-EEc
Q 024121 145 TATEEDGELIGKLFGSVGKI-WRA 167 (272)
Q Consensus 145 ~~~~~~~~~v~~ll~~~G~~-~~~ 167 (272)
.++++..+.+..+++.+|+. +.+
T Consensus 154 ~T~~~~~~~~~~~~~~~gk~pv~v 177 (180)
T PF02737_consen 154 KTSPETVDRVRALLRSLGKTPVVV 177 (180)
T ss_dssp TS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 89999999999999999975 443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=117.40 Aligned_cols=121 Identities=19% Similarity=0.336 Sum_probs=92.7
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------------CceeecCchhhhccCCEEEE
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYSDVVVF 77 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~aDivil 77 (272)
||+|||+|+||.++|..|.++|+ +|++| .|+++..+.+.+. ++.++.|.+++++++|+|++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~----~V~l~-~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH----EVTLW-GRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIII 75 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE----EEEEE-TSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCC----EEEEE-eccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEe
Confidence 79999999999999999999999 99999 9999988888761 23467788899999999999
Q ss_pred eeCcccHHHHHHHhchhcCCCCEEEEEcCCCC-------HHHHHHHhCCCCEEE-EccCchhhhcCCc
Q 024121 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK-------LKDLQEWTGHSRFIR-VMPNTPSAVGEAA 137 (272)
Q Consensus 78 ~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~-------~~~l~~~~~~~~~~~-~~p~~~~~~~~g~ 137 (272)
+||.+.++++++++.+++++++.++++++|+. .+.+++.++..++.- .-|+.+.++..+.
T Consensus 76 avPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~ 143 (157)
T PF01210_consen 76 AVPSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGK 143 (157)
T ss_dssp -S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT-
T ss_pred cccHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCC
Confidence 99999999999999999999999999988872 245566666433332 3477777665553
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-13 Score=119.33 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=106.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-------------cCchhhhccCC
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------------SDNNAVVEYSD 73 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------------~~~~~~~~~aD 73 (272)
+++.|||+|||+|.||+.+|..|.++|+ +|+++ .|++. +.+.+.|+... .+..+....+|
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~----~V~~~-~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D 74 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAGF----DVHFL-LRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCD 74 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCCC----eEEEE-EeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCC
Confidence 3466899999999999999999999999 99999 88763 33444443221 11223456899
Q ss_pred EEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-HHHHHHhCCCCEEEEc------cCchhhh---cCCceEEEeC
Q 024121 74 VVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRVM------PNTPSAV---GEAATVMSLG 143 (272)
Q Consensus 74 ivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-~~l~~~~~~~~~~~~~------p~~~~~~---~~g~~~~~~~ 143 (272)
+||+|||..++.++++.+.+.+.+++.|+++.+|+.. +.+++.++..+++... ...|..+ +.|.+.+...
T Consensus 75 ~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~ 154 (313)
T PRK06249 75 WVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYH 154 (313)
T ss_pred EEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecC
Confidence 9999999999999999999988889999999999975 5677788754554321 1122211 2233333221
Q ss_pred CCCC-----HHHHHHHHHHhhhcCCeEEcCc
Q 024121 144 GTAT-----EEDGELIGKLFGSVGKIWRADE 169 (272)
Q Consensus 144 ~~~~-----~~~~~~v~~ll~~~G~~~~~~e 169 (272)
.+.+ .+..+.+..+|+..|-.....+
T Consensus 155 ~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~ 185 (313)
T PRK06249 155 SGPAADDGITARVEEGAALFRAAGIDSQAMP 185 (313)
T ss_pred CCCcccchHHHHHHHHHHHHHhCCCCceeCc
Confidence 1112 3556677888888885544444
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.5e-14 Score=120.03 Aligned_cols=154 Identities=15% Similarity=0.269 Sum_probs=106.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-------------ecCchhhhccCCEEEE
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-------------LSDNNAVVEYSDVVVF 77 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-------------~~~~~~~~~~aDivil 77 (272)
|||+|||+|.||+.++..|.++|+ +|++| +| +++.+.+.+.|+.+ ..+.++....+|+||+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~----~V~~~-~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR----DVTFL-VR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC----ceEEE-ec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence 689999999999999999999999 99999 99 77777777655432 2334455578999999
Q ss_pred eeCcccHHHHHHHhchhcCCCCEEEEEcCCCC-HHHHHHHhCCCCEEEE---ccC---chhhhc---CCceEEEeCCCCC
Q 024121 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK-LKDLQEWTGHSRFIRV---MPN---TPSAVG---EAATVMSLGGTAT 147 (272)
Q Consensus 78 ~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~-~~~l~~~~~~~~~~~~---~p~---~~~~~~---~g~~~~~~~~~~~ 147 (272)
|+|..+++++++++.+.+.++++|+++.+|+. .+.+.+.++..+++.. ++. .|..+. .+...+..-+...
T Consensus 75 avk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 75 AVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred EecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 99999999999999998888889999999987 4667777764344322 111 122111 1122221111223
Q ss_pred HHHHHHHHHHhhhcCCeEEcCcc
Q 024121 148 EEDGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 148 ~~~~~~v~~ll~~~G~~~~~~e~ 170 (272)
.+..+.+.++|+..|..+...++
T Consensus 155 ~~~~~~l~~~l~~~g~~~~~~~d 177 (305)
T PRK12921 155 SERTRAVRDALAGARLEVVLSEN 177 (305)
T ss_pred CHHHHHHHHHHHhCCCCceecHH
Confidence 45566777888887754343443
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.4e-14 Score=121.62 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=111.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC-------CCCCCcEEEEeCCCHH-----HHHHHHH--------------cCceee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSG-------VLPPDRICTAVHSNLK-----RRDAFES--------------IGVKVL 62 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g-------~~~~~~V~v~~~r~~~-----~~~~l~~--------------~g~~~~ 62 (272)
+.+||+|||+|+||+++|..|.++| + +|.+| .|+++ ..+.+.+ .++..+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~----~V~lw-~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~t 84 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHN----EVRMW-VLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAV 84 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCC----eEEEE-EecccccchHHHHHHHhcCCCcccCCCCcCCCceEEe
Confidence 3579999999999999999999987 6 99999 88875 2444443 134456
Q ss_pred cCchhhhccCCEEEEeeCcccHHHHHHHhch--hcCCCCEEEEEcCCCCHH---------HHHHHhCCCCEE-EEccCch
Q 024121 63 SDNNAVVEYSDVVVFSVKPQVVKDVAMQIRP--LLSRKKLLVSVAAGVKLK---------DLQEWTGHSRFI-RVMPNTP 130 (272)
Q Consensus 63 ~~~~~~~~~aDivil~v~~~~~~~v~~~l~~--~l~~~~~iis~~~~~~~~---------~l~~~~~~~~~~-~~~p~~~ 130 (272)
+|..++++++|+|+++||++.+++++.++.+ ++.+++++||+++|+..+ .+++.++ .++. -.-|+++
T Consensus 85 sdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~-~~~~~LsGPs~A 163 (365)
T PTZ00345 85 SDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELG-IPCCALSGANVA 163 (365)
T ss_pred cCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhC-CCeEEEECCCHH
Confidence 7778889999999999999999999999998 777777999999988642 2334444 3443 2348888
Q ss_pred hhhcCCce--EEEeCCCCCHHHHHHHHHHhhhcCCeEEcCcc
Q 024121 131 SAVGEAAT--VMSLGGTATEEDGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 131 ~~~~~g~~--~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~ 170 (272)
.++..+.. +...+ .+.+..+.++.+|+.=.-.++.+++
T Consensus 164 ~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~D 203 (365)
T PTZ00345 164 NDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPD 203 (365)
T ss_pred HHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCC
Confidence 77766542 22222 2677888888888753322444443
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-13 Score=117.22 Aligned_cols=192 Identities=17% Similarity=0.160 Sum_probs=130.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
.....++|||||+|+||.++|++|...|+ +|.+| +|.....+.....|+.+. +..+++++||+|++++|+....
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~----~ViV~-~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd~~t~ 85 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGV----EVVVG-VRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPDEQQA 85 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcC----EEEEE-ECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCChHHH
Confidence 34466899999999999999999999999 99999 876544444555687764 7899999999999999986667
Q ss_pred HHHH-HhchhcCCCCEEEEEcCCCCHHHHHHHhC--CCCEEEEccCchhhh-------cCCceEEE-eCCCCCHHHHHHH
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAGVKLKDLQEWTG--HSRFIRVMPNTPSAV-------GEAATVMS-LGGTATEEDGELI 154 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~~~~~~l~~~~~--~~~~~~~~p~~~~~~-------~~g~~~~~-~~~~~~~~~~~~v 154 (272)
.++. ++.+.++++.+++ .+-|..+.. ....| +..++-+-|-.|.+. +.|+..++ .-.+.+..+.+..
T Consensus 86 ~V~~~eil~~MK~GaiL~-f~hgfni~~-~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~a 163 (335)
T PRK13403 86 HVYKAEVEENLREGQMLL-FSHGFNIHF-GQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVA 163 (335)
T ss_pred HHHHHHHHhcCCCCCEEE-ECCCcceec-CceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHH
Confidence 7874 6888899998766 456666532 12233 456676667666532 45665443 2233456678888
Q ss_pred HHHhhhcCC--e-EE-c---CcccchhH---HHchHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 024121 155 GKLFGSVGK--I-WR-A---DEKLFDAI---TGLSGPAYIFLAIEALADGGVAAGLPRELALG 207 (272)
Q Consensus 155 ~~ll~~~G~--~-~~-~---~e~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~ 207 (272)
..+...+|. . +. . .|..-|.+ ..++ .-+..++.+-.+...++|.+|+.|+-
T Consensus 164 la~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~--Gg~~~li~~gfe~lveaGy~pe~Ayf 224 (335)
T PRK13403 164 LAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLC--GGVTALVKAGFETLTEGGYRPEIAYF 224 (335)
T ss_pred HHHHHHcCCCceeEEecchHHHHhhhhcccchhhH--HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 888999983 2 22 1 23233333 3333 12233444555567889999998864
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7e-14 Score=125.42 Aligned_cols=190 Identities=15% Similarity=0.165 Sum_probs=123.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc----------------eeecCchhhhccCC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV----------------KVLSDNNAVVEYSD 73 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~----------------~~~~~~~~~~~~aD 73 (272)
.|||||||+|.||..||.+|.+ || +|++| |+++++.+.+.+ |. ..+++..+++++||
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~----~V~g~-D~~~~~ve~l~~-G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~ad 78 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SR----QVVGF-DVNKKRILELKN-GVDVNLETTEEELREARYLKFTSEIEKIKECN 78 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CC----EEEEE-eCCHHHHHHHHC-cCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCC
Confidence 4899999999999999999877 68 99999 999999998873 22 13344456789999
Q ss_pred EEEEeeCcc-------c---HHHHHHHhchhcCCCCEEEEEcCCCCH---H-HHHHHhC---C-----CCEEEEccC--c
Q 024121 74 VVVFSVKPQ-------V---VKDVAMQIRPLLSRKKLLVSVAAGVKL---K-DLQEWTG---H-----SRFIRVMPN--T 129 (272)
Q Consensus 74 ivil~v~~~-------~---~~~v~~~l~~~l~~~~~iis~~~~~~~---~-~l~~~~~---~-----~~~~~~~p~--~ 129 (272)
++|+|||.. + +....+++.++++++++||..+ ++++ + .++..+. + ...+...|- .
T Consensus 79 vvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~S-Tv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~ 157 (425)
T PRK15182 79 FYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYES-TVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERIN 157 (425)
T ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEec-CCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCC
Confidence 999999732 3 3344467888888999988653 3332 2 2222221 1 122332232 1
Q ss_pred hhhh---cCCceEEEeCCCCCHHHHHHHHHHhhhcC--CeEEcCcccchhHHHchHHHHHHH---HHHHHHHHHHHcCCC
Q 024121 130 PSAV---GEAATVMSLGGTATEEDGELIGKLFGSVG--KIWRADEKLFDAITGLSGPAYIFL---AIEALADGGVAAGLP 201 (272)
Q Consensus 130 ~~~~---~~g~~~~~~~~~~~~~~~~~v~~ll~~~G--~~~~~~e~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~Gl~ 201 (272)
+... .....-+..|. +++..+.++++++.+. ..++++...-...++++.+.|... ++..+...+++.|+|
T Consensus 158 ~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD 235 (425)
T PRK15182 158 PGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNID 235 (425)
T ss_pred CCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 1111 11122244453 5777889999999885 346666666677777774444433 333444467899999
Q ss_pred HHHHHHHH
Q 024121 202 RELALGLA 209 (272)
Q Consensus 202 ~~~a~~~~ 209 (272)
.++..+.+
T Consensus 236 ~~~v~~a~ 243 (425)
T PRK15182 236 TEAVLRAA 243 (425)
T ss_pred HHHHHHHh
Confidence 99888774
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-13 Score=119.52 Aligned_cols=143 Identities=15% Similarity=0.185 Sum_probs=105.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCC--------CCCCCcEEEEeCC-----CHHHHHHHHH--------------cCceeecC
Q 024121 12 ILGFIGAGKMAESIAKGVAKSG--------VLPPDRICTAVHS-----NLKRRDAFES--------------IGVKVLSD 64 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g--------~~~~~~V~v~~~r-----~~~~~~~l~~--------------~g~~~~~~ 64 (272)
||+|||+|+||+++|..|.++| + +|.+| .| +++-.+.+.+ .++..+.|
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~----~V~lw-~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~d 75 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEE----SVRMW-VFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPD 75 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCc----eEEEE-EeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECC
Confidence 6999999999999999999998 7 99999 88 4444444332 12345677
Q ss_pred chhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCHH---------HHHHHhCCCCEE-EEccCchhhhc
Q 024121 65 NNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK---------DLQEWTGHSRFI-RVMPNTPSAVG 134 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~---------~l~~~~~~~~~~-~~~p~~~~~~~ 134 (272)
.+++++++|+||++||++.+++++.++.+++++++++|++++|+..+ .+++.++ .++. -.-|+.+..+.
T Consensus 76 l~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~-~~~~~lsGP~~A~Eva 154 (342)
T TIGR03376 76 LVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELG-IPCGVLSGANLANEVA 154 (342)
T ss_pred HHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhC-CCeEEeeCcchHHHHH
Confidence 78889999999999999999999999999998899999999998654 2344443 3443 23478887776
Q ss_pred CCc--eEEEeCCCCC--HHHHHHHHHHhhh
Q 024121 135 EAA--TVMSLGGTAT--EEDGELIGKLFGS 160 (272)
Q Consensus 135 ~g~--~~~~~~~~~~--~~~~~~v~~ll~~ 160 (272)
.+. .....+.+.+ .+..+.++.+|+.
T Consensus 155 ~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~ 184 (342)
T TIGR03376 155 KEKFSETTVGYRDPADFDVDARVLKALFHR 184 (342)
T ss_pred cCCCceEEEEeCCCcchHHHHHHHHHHhCC
Confidence 665 2222222111 6778888888874
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=122.57 Aligned_cols=186 Identities=14% Similarity=0.136 Sum_probs=121.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----------------cCcee--ecCchhhhccC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----------------IGVKV--LSDNNAVVEYS 72 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----------------~g~~~--~~~~~~~~~~a 72 (272)
|||+|||+|.||..+|..+. .|| +|++| |+++++.+.+.+ .+... +.+..+++.++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~----~Vigv-D~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~a 74 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNH----EVVAL-DILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDA 74 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCC----cEEEE-ECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCC
Confidence 58999999999999997766 589 99999 999999888765 22333 23356778899
Q ss_pred CEEEEeeCcc-----------cHHHHHHHhchhcCCCCEEEEEcCCCC---HHHHHHHhCCCCEEEEccCchhhhcCCce
Q 024121 73 DVVVFSVKPQ-----------VVKDVAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTGHSRFIRVMPNTPSAVGEAAT 138 (272)
Q Consensus 73 Divil~v~~~-----------~~~~v~~~l~~~l~~~~~iis~~~~~~---~~~l~~~~~~~~~~~~~p~~~~~~~~g~~ 138 (272)
|+||+|||.. .++++++++.. ++++++||.. ++++ .+.+.+.+.. ..+... |.-...|..
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~-STv~pgtt~~l~~~~~~-~~v~~~---PE~l~~G~a 148 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIK-STVPVGFTAAMHKKYRT-ENIIFS---PEFLREGKA 148 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEe-eecCCchHHHHHHHhhc-CcEEEC---cccccCCcc
Confidence 9999999743 56777788876 5888888854 3333 3455544432 222232 332333332
Q ss_pred --------EEEeCCCCCHHHHHHHHHHhhh--cCC-e-EEcCcccchhHHHchHHHHHHH---HHHHHHHHHHHcCCCHH
Q 024121 139 --------VMSLGGTATEEDGELIGKLFGS--VGK-I-WRADEKLFDAITGLSGPAYIFL---AIEALADGGVAAGLPRE 203 (272)
Q Consensus 139 --------~~~~~~~~~~~~~~~v~~ll~~--~G~-~-~~~~e~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~Gl~~~ 203 (272)
-+..|. +++..+.+.+++.. ++. . ++++......++++..+.|... ++..+...+++.|+|..
T Consensus 149 ~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~ 226 (388)
T PRK15057 149 LYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTR 226 (388)
T ss_pred cccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHH
Confidence 233332 45667778888854 554 3 3456655666777764444433 33444556789999999
Q ss_pred HHHHHHH
Q 024121 204 LALGLAS 210 (272)
Q Consensus 204 ~a~~~~~ 210 (272)
+..+.+.
T Consensus 227 eV~~a~~ 233 (388)
T PRK15057 227 QIIEGVC 233 (388)
T ss_pred HHHHHhc
Confidence 8877664
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-12 Score=111.49 Aligned_cols=153 Identities=16% Similarity=0.265 Sum_probs=109.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeec------------CchhhhccCCEEEEe
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS------------DNNAVVEYSDVVVFS 78 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~------------~~~~~~~~aDivil~ 78 (272)
|||+|+|+|.||+.++..|.++|+ +|+++ .|++. .+++++.|+.+.. +..+....+|+||++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~----~V~~~-~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~ 74 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGH----DVTLL-VRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVT 74 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC----eEEEE-ecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEE
Confidence 799999999999999999999998 99999 88865 7888876654321 223456689999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCCCCHH-HHHHHhCCCCEEE-Ecc--------CchhhhcCCceEEEeCCCCCH
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK-DLQEWTGHSRFIR-VMP--------NTPSAVGEAATVMSLGGTATE 148 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~-~l~~~~~~~~~~~-~~p--------~~~~~~~~g~~~~~~~~~~~~ 148 (272)
|+..+.+++++.+.+.+++++.|+.+.+|+... .+++.++..++.. +.+ +.-...+.|.+.+..-....+
T Consensus 75 vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 75 VKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred eccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 999999999999999999999999999999874 5666666433332 211 111112223333332222344
Q ss_pred HHHHHHHHHhhhcCCeEEcCc
Q 024121 149 EDGELIGKLFGSVGKIWRADE 169 (272)
Q Consensus 149 ~~~~~v~~ll~~~G~~~~~~e 169 (272)
+..+.+.++|+..|-..+..+
T Consensus 155 ~~~~~i~~~~~~a~~~~~~~~ 175 (307)
T COG1893 155 ELVKALAELFKEAGLEVELHP 175 (307)
T ss_pred HHHHHHHHHHHhCCCCeEEcH
Confidence 678888888888885544444
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=109.53 Aligned_cols=181 Identities=13% Similarity=0.188 Sum_probs=126.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~ 89 (272)
|||+|||. |.||+.+++.|.++|+ .|+ +.+||+||+|+|...+.++++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~----~v~---------------------------~~~~DlVilavPv~~~~~~i~ 49 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGL----GVY---------------------------IKKADHAFLSVPIDAALNYIE 49 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCC----EEE---------------------------ECCCCEEEEeCCHHHHHHHHH
Confidence 68999988 9999999999999999 764 258999999999999999998
Q ss_pred HhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCch-hhhcC---CceEEEeCCCCCHHHHHHHHHHhhhcC-Ce
Q 024121 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTP-SAVGE---AATVMSLGGTATEEDGELIGKLFGSVG-KI 164 (272)
Q Consensus 90 ~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~~-~~~~~---g~~~~~~~~~~~~~~~~~v~~ll~~~G-~~ 164 (272)
++. .+++|+ ++++.. +.+. ..++++.||... ..... +..+++ .+..+++..+.++++|+ | +.
T Consensus 50 ~~~------~~v~Dv-~SvK~~-i~~~--~~~~vg~HPMfGp~~a~~~lf~~~iv~-~~~~~~~~~~~~~~l~~--G~~~ 116 (197)
T PRK06444 50 SYD------NNFVEI-SSVKWP-FKKY--SGKIVSIHPLFGPMSYNDGVHRTVIFI-NDISRDNYLNEINEMFR--GYHF 116 (197)
T ss_pred HhC------CeEEec-cccCHH-HHHh--cCCEEecCCCCCCCcCcccccceEEEE-CCCCCHHHHHHHHHHHc--CCEE
Confidence 764 256665 555554 3333 247899998643 22222 223333 45567777889999998 6 45
Q ss_pred EEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHhcCCCcchH
Q 024121 165 WRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKS-GKHPGQLKDDVASPGGTT 241 (272)
Q Consensus 165 ~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~-~~~~~~l~~~~~~~~g~t 241 (272)
+++++++||..++.+ .|+.++. ++.+ . + .++...+|+...+++.+. +.+|+.|.+.+..+...
T Consensus 117 ~~~t~eeHD~~~A~ishLpH~ia~---al~~----~--~----~~~~t~~fr~l~ria~~~~~~~p~lw~dI~~~N~~a- 182 (197)
T PRK06444 117 VEMTADEHDLLMSEIMVKPYIISM---ILKD----I--K----SDIKTGSFDKLLEVSEIKEKENWEVFNDTIIYNPYT- 182 (197)
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHH---HHcc----C--C----CCCCCccHHHHHHHHHHhccCCHHHHHHHHHHCchH-
Confidence 789999999999887 5554332 3322 1 1 245667788877776432 56899999988777544
Q ss_pred HHHHHHHHh
Q 024121 242 IAGIHELEK 250 (272)
Q Consensus 242 ~~~l~~l~~ 250 (272)
+.++.+.+
T Consensus 183 -~~~~~~~~ 190 (197)
T PRK06444 183 -NVINDLIE 190 (197)
T ss_pred -HHHHHHHH
Confidence 55555543
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-12 Score=110.25 Aligned_cols=150 Identities=21% Similarity=0.232 Sum_probs=117.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH-----------HcC-------------ceeec
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-----------SIG-------------VKVLS 63 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~g-------------~~~~~ 63 (272)
+..+||++||+|.||+.||..+..+|+ +|.++ |++++.+++.. +.| +....
T Consensus 1 ~~i~kv~ViGaG~MG~gIA~~~A~~G~----~V~l~-D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~ 75 (307)
T COG1250 1 MEIKKVAVIGAGVMGAGIAAVFALAGY----DVVLK-DISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTT 75 (307)
T ss_pred CCccEEEEEcccchhHHHHHHHhhcCC----ceEEE-eCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccC
Confidence 357899999999999999999999889 99999 99976543322 111 11122
Q ss_pred CchhhhccCCEEEEeeCcc-c-HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEE
Q 024121 64 DNNAVVEYSDVVVFSVKPQ-V-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~-~-~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~ 140 (272)
+.. .+++||+||-+++-+ . -++++.++..+.+++.++-|.+|++++..+++.+. ..++++.|+..|.....- .-+
T Consensus 76 ~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~L-VEv 153 (307)
T COG1250 76 DLA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPL-VEV 153 (307)
T ss_pred chh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCccee-EEE
Confidence 222 578999999999754 3 46788888888889999999999999999988775 367999998777765442 334
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCCe
Q 024121 141 SLGGTATEEDGELIGKLFGSVGKI 164 (272)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~G~~ 164 (272)
..|..++++.++.+.++.+.+|+.
T Consensus 154 I~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 154 IRGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCC
Confidence 567888999999999999999965
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-12 Score=122.59 Aligned_cols=154 Identities=18% Similarity=0.143 Sum_probs=123.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------c-------------Cceeec
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I-------------GVKVLS 63 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~-------------g~~~~~ 63 (272)
...++|+|||+|.||..||..++.+|+ +|+++ |++++.+++..+ . .++.+.
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~----~V~l~-d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 385 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKGT----PIVMK-DINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL 385 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC
Confidence 456789999999999999999999999 99999 999886543211 1 233444
Q ss_pred CchhhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEE
Q 024121 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~ 140 (272)
+. +.+++||+||-|++-+ .-++++.++.+..++++++.|.++++++..++..+. ..++++.|+..|...-.- .=+
T Consensus 386 ~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~l-vEv 463 (714)
T TIGR02437 386 SY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPL-VEV 463 (714)
T ss_pred CH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCce-Eee
Confidence 54 4578999999999754 346888999998999999999999999999988776 368999998877765433 334
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024121 141 SLGGTATEEDGELIGKLFGSVGKI-WRAD 168 (272)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~G~~-~~~~ 168 (272)
..++.+++++.+.+..++..+|+. +.+.
T Consensus 464 v~g~~Ts~~~~~~~~~~~~~lgk~pv~v~ 492 (714)
T TIGR02437 464 IRGEKSSDETIATVVAYASKMGKTPIVVN 492 (714)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 568889999999999999999976 5554
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-12 Score=121.90 Aligned_cols=153 Identities=20% Similarity=0.147 Sum_probs=121.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH-----------Hc-------------CceeecC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-----------SI-------------GVKVLSD 64 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~-------------g~~~~~~ 64 (272)
..+||+|||+|.||..||..++.+|+ +|+++ |++++.+++.. +. .++.+.+
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 386 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGV----PVIMK-DINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLD 386 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCC
Confidence 45789999999999999999999999 99999 99988654321 11 2344455
Q ss_pred chhhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEE
Q 024121 65 NNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~ 141 (272)
. +.+++||+||-|+|-+ .-.+++.++.+++++++++.|.++++++..+.+.+. ..++++.|+..|.....- .-+.
T Consensus 387 ~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~l-VEvv 464 (715)
T PRK11730 387 Y-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPL-VEVI 464 (715)
T ss_pred H-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccce-EEee
Confidence 5 4578999999999754 346888999998999999999999999999988776 367999998777764433 3345
Q ss_pred eCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024121 142 LGGTATEEDGELIGKLFGSVGKI-WRAD 168 (272)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~G~~-~~~~ 168 (272)
.++.++++.++.+..+++.+|+. +.+.
T Consensus 465 ~g~~T~~~~~~~~~~~~~~lgk~pv~v~ 492 (715)
T PRK11730 465 RGEKTSDETIATVVAYASKMGKTPIVVN 492 (715)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCceEEec
Confidence 68888999999999999999975 5553
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-12 Score=122.27 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=123.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------c-------------Cceeec
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I-------------GVKVLS 63 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~-------------g~~~~~ 63 (272)
...++|+|||+|.||..||..++.+|+ +|+++ |++++.+++..+ . .++.+.
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~G~----~V~l~-d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 407 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDKGL----KTVLK-DATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL 407 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhCCC----cEEEe-cCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 456789999999999999999999999 99999 999987544211 1 233445
Q ss_pred CchhhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEE
Q 024121 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~ 140 (272)
+. +.+++||+||-+|+-+ .-.+++.++.+..++++++.|.++++++..+++.+. ..++++.|+..|...-. ..-+
T Consensus 408 ~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~-LvEv 485 (737)
T TIGR02441 408 DY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQ-LLEI 485 (737)
T ss_pred CH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCc-eEEE
Confidence 55 4578999999999754 345888999998999999999999999999988776 36799999887776543 3335
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024121 141 SLGGTATEEDGELIGKLFGSVGKI-WRAD 168 (272)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~G~~-~~~~ 168 (272)
..++.++++.++.+..++..+|+. +.+.
T Consensus 486 v~g~~Ts~~~~~~~~~~~~~lgk~pv~v~ 514 (737)
T TIGR02441 486 ITHDGTSKDTLASAVAVGLKQGKVVIVVK 514 (737)
T ss_pred eCCCCCCHHHHHHHHHHHHHCCCeEEEEC
Confidence 567889999999999999999976 5554
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-12 Score=110.73 Aligned_cols=154 Identities=14% Similarity=0.151 Sum_probs=106.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-Cceeec-----------CchhhhccCCEEEE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-GVKVLS-----------DNNAVVEYSDVVVF 77 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-g~~~~~-----------~~~~~~~~aDivil 77 (272)
.|||+|||+|.||+.++..|.++|+ +|+++ .|+.++.+.+.+. |+.+.. ...+.....|+||+
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~----~V~lv-~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv 76 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL----PVRLI-LRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLL 76 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC----CeEEE-EechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEE
Confidence 5799999999999999999999999 99999 9988888877753 443311 11122357899999
Q ss_pred eeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-HHHHHHhCCCCEEEEcc------Cchhhhc-CCceEEEeCCCCCHH
Q 024121 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRVMP------NTPSAVG-EAATVMSLGGTATEE 149 (272)
Q Consensus 78 ~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-~~l~~~~~~~~~~~~~p------~~~~~~~-~g~~~~~~~~~~~~~ 149 (272)
|||..+..++++++.+.+.+++.|+++.+|+.. +.+++.++..+++.... ..|..+. .+...+..|.. +.+
T Consensus 77 ~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~-~~~ 155 (305)
T PRK05708 77 ACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDP-RNP 155 (305)
T ss_pred ECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCC-CCc
Confidence 999999999999999999999999999999986 56777777444443211 1222221 11111222322 234
Q ss_pred HHHHHHHHhhhcCCeEEcCc
Q 024121 150 DGELIGKLFGSVGKIWRADE 169 (272)
Q Consensus 150 ~~~~v~~ll~~~G~~~~~~e 169 (272)
..+.+.++|+..|......+
T Consensus 156 ~~~~l~~~l~~ag~~~~~~~ 175 (305)
T PRK05708 156 TAPAWLDDLREAGIPHEWTV 175 (305)
T ss_pred chHHHHHHHHhcCCCCccCH
Confidence 45667778887775444443
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-12 Score=111.55 Aligned_cols=194 Identities=16% Similarity=0.192 Sum_probs=134.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----CceeecCchhh---hccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GVKVLSDNNAV---VEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----g~~~~~~~~~~---~~~aDivil~v~ 80 (272)
+...||+||+|.||+.++.++.++|| .|.+| ||++++.+++.+. .+..+.+.+|. +++..-|+++|+
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~----~Vavy-NRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVk 76 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGY----TVAVY-NRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVK 76 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCc----eEEEE-eCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEe
Confidence 45679999999999999999999999 99999 9999999988772 24455666654 568899999998
Q ss_pred c-ccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHH--h-C-CCCEEEEcc-CchhhhcCCceEEEeCCCCCHHHHHHH
Q 024121 81 P-QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW--T-G-HSRFIRVMP-NTPSAVGEAATVMSLGGTATEEDGELI 154 (272)
Q Consensus 81 ~-~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~--~-~-~~~~~~~~p-~~~~~~~~g~~~~~~~~~~~~~~~~~v 154 (272)
. ..++.++++|.|+|.++.++|+--++.-.+++++. + . +..+++.-- +.-.-...|.+++. | ++++..+.+
T Consensus 77 AG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMp-G--G~~eay~~v 153 (473)
T COG0362 77 AGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMP-G--GQKEAYELV 153 (473)
T ss_pred cCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCC-C--CCHHHHHHH
Confidence 7 45789999999999999999986555444544432 2 2 344554311 11111234555553 3 389999999
Q ss_pred HHHhhhcC-----C-e-EEcCcccchhHHHch--HHHHH--HHHHHHHHHHHH-HcCCCHHHHHHHHHH
Q 024121 155 GKLFGSVG-----K-I-WRADEKLFDAITGLS--GPAYI--FLAIEALADGGV-AAGLPRELALGLASQ 211 (272)
Q Consensus 155 ~~ll~~~G-----~-~-~~~~e~~~~~~~~~~--~~~~~--~~~~~~l~~~~~-~~Gl~~~~a~~~~~~ 211 (272)
.++|+.+. . + .+++++..+.+.+.+ |.-|. ..+.|+.. ..+ ..|++.++..++...
T Consensus 154 ~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~-ilk~~lgls~~ei~~vF~~ 221 (473)
T COG0362 154 APILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYD-ILKDGLGLSAEEIAEVFEE 221 (473)
T ss_pred HHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHH
Confidence 99998773 2 2 568888777777766 33331 22333332 222 377887776665543
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.8e-12 Score=120.36 Aligned_cols=153 Identities=14% Similarity=0.103 Sum_probs=121.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHH-----------Hc-------------Cceeec
Q 024121 9 ESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFE-----------SI-------------GVKVLS 63 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~-------------g~~~~~ 63 (272)
..++|+|||+|.||+.||..+. .+|+ +|+++ |++++.+++.. +. .++.++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 377 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGI----PVRIK-DINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTT 377 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeC
Confidence 4578999999999999999988 5899 99999 99987543321 11 234445
Q ss_pred CchhhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEE
Q 024121 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~ 140 (272)
+. +.+++||+||-|+|-+ .-.+++.++..+.++++++.|.++++++..+++.+. ..++++.|+..|..... ..-+
T Consensus 378 ~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~-lVEv 455 (699)
T TIGR02440 378 DY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMP-LVEV 455 (699)
T ss_pred Ch-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCc-eEEE
Confidence 55 4678999999999755 345888999988999999999999999999988775 36799999877775443 3335
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024121 141 SLGGTATEEDGELIGKLFGSVGKI-WRAD 168 (272)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~G~~-~~~~ 168 (272)
+.++.++++.++.+..+++.+|+. +++.
T Consensus 456 v~g~~T~~~~~~~~~~~~~~~gk~pv~v~ 484 (699)
T TIGR02440 456 IPHAGTSEQTIATTVALAKKQGKTPIVVA 484 (699)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 568889999999999999999975 6554
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.8e-12 Score=118.82 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=121.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHH-----------Hc-------------Cceeec
Q 024121 9 ESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFE-----------SI-------------GVKVLS 63 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~-------------g~~~~~ 63 (272)
..+||+|||+|.||..||..++ .+|+ +|+++ |++++.+++.. +. .++.+.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 382 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGL----PVRIK-DINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT 382 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC
Confidence 4678999999999999999999 8899 99999 99987544321 11 234445
Q ss_pred CchhhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEE
Q 024121 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~ 140 (272)
+. +.+++||+||-|++-+ .-.+++.++.++.+|++++.|.++++++..+++.+. ..++++.|+..|..... ..-+
T Consensus 383 ~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~-lVEv 460 (708)
T PRK11154 383 DY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMP-LVEV 460 (708)
T ss_pred Ch-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCc-eEEE
Confidence 55 5678999999999754 346888999998999999999999999999988765 36899999887776543 3335
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024121 141 SLGGTATEEDGELIGKLFGSVGKI-WRAD 168 (272)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~G~~-~~~~ 168 (272)
.+++.++++..+.+..+++.+|+. +.+.
T Consensus 461 v~g~~Ts~~~~~~~~~~~~~~gk~pv~v~ 489 (708)
T PRK11154 461 IPHAKTSAETIATTVALAKKQGKTPIVVR 489 (708)
T ss_pred ECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 578889999999999999999975 5553
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.3e-12 Score=105.29 Aligned_cols=164 Identities=18% Similarity=0.209 Sum_probs=123.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhc-cCCEEEEeeCcccHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDivil~v~~~~~~~v~ 88 (272)
..+|||||.|+||.-+|..|.++|| .+..+ +|.. .-+...+.|....+.+.++++ +.|+|++||....++.++
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh----~li~h-sRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlctsilsiekil 125 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGH----GLICH-SRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKIL 125 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCc----eeEec-Ccch-hHHHHHHhcccccccHHHHHhcCCCEEEEEehhhhHHHHH
Confidence 4689999999999999999999999 99999 9875 333333367666666656554 799999999999999999
Q ss_pred HHhchh-cCCCCEEEEEcCC--CCHHHHHHHhC-CCCEEEEccCc-hhhh---cCCceEEEeCCC-----CCHHHHHHHH
Q 024121 89 MQIRPL-LSRKKLLVSVAAG--VKLKDLQEWTG-HSRFIRVMPNT-PSAV---GEAATVMSLGGT-----ATEEDGELIG 155 (272)
Q Consensus 89 ~~l~~~-l~~~~~iis~~~~--~~~~~l~~~~~-~~~~~~~~p~~-~~~~---~~g~~~~~~~~~-----~~~~~~~~v~ 155 (272)
...-+. ++.++++++..+- ...+.+.+++| +..++.+||.+ |.++ .+|...++-... .-++..+.+.
T Consensus 126 atypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fl 205 (480)
T KOG2380|consen 126 ATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFL 205 (480)
T ss_pred HhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHH
Confidence 877665 7888888865432 33456778888 68899999874 3323 345555543221 2378899999
Q ss_pred HHhhhcC-CeEEcCcccchhHHHch
Q 024121 156 KLFGSVG-KIWRADEKLFDAITGLS 179 (272)
Q Consensus 156 ~ll~~~G-~~~~~~e~~~~~~~~~~ 179 (272)
.+|...| +.++++-++||.++|=+
T Consensus 206 eIf~cegckmVemS~eeHDkiaAds 230 (480)
T KOG2380|consen 206 EIFACEGCKMVEMSYEEHDKIAADS 230 (480)
T ss_pred HHHHhcCCeEEEEEeecccccccch
Confidence 9999999 55899999999888754
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-11 Score=100.20 Aligned_cols=206 Identities=19% Similarity=0.161 Sum_probs=139.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
..+.++|+|||+|+-|.+-+.+|.++|. +|.+- -|. ....++..+.|..+ .+..|+++++|+|++.+|+..-.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGl----nViiG-lr~g~~s~~kA~~dGf~V-~~v~ea~k~ADvim~L~PDe~q~ 88 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGL----NVIIG-LRKGSSSWKKAKEDGFKV-YTVEEAAKRADVVMILLPDEQQK 88 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCC----cEEEE-ecCCchhHHHHHhcCCEe-ecHHHHhhcCCEEEEeCchhhHH
Confidence 4466899999999999999999999999 88776 453 33466777789887 47899999999999999999999
Q ss_pred HHHH-HhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhh-------cCCceEEE-eCCCCCHHHHHHHH
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAV-------GEAATVMS-LGGTATEEDGELIG 155 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~-------~~g~~~~~-~~~~~~~~~~~~v~ 155 (272)
+|++ +|.|.++.++.+. .+.|..+..-.-..| +..++-+-|-.|.+. +.|+..++ .....+....+...
T Consensus 89 ~vy~~~I~p~Lk~G~aL~-FaHGfNihf~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Al 167 (338)
T COG0059 89 EVYEKEIAPNLKEGAALG-FAHGFNIHFGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIAL 167 (338)
T ss_pred HHHHHHhhhhhcCCceEE-eccccceecceecCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHHH
Confidence 9997 7999999998554 566766532111112 455666667666542 45665443 22344566788888
Q ss_pred HHhhhcC--Ce-EEc----Cccc---chhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Q 024121 156 KLFGSVG--KI-WRA----DEKL---FDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVT 221 (272)
Q Consensus 156 ~ll~~~G--~~-~~~----~e~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~ 221 (272)
.+...+| +. +.. .|.. ++.-+.+|| .+..++.+-.+.+.++|.+|+.|+--...-+.-..+++.
T Consensus 168 a~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcG--gl~~li~agfetLvEaGy~PE~AyfE~lhE~klIvdLiy 241 (338)
T COG0059 168 AYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCG--GLQALIKAGFETLVEAGYQPELAYFECLHELKLIVDLIY 241 (338)
T ss_pred HHHHhcCCCccceEeeeeHHhhhcccccchhhhhh--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999998 22 321 2323 333344441 222333444456778999999987655444444444443
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.9e-13 Score=101.25 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=81.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
+.++|+|||+|..|.+.|.+|.++|+ +|.+. .|..+ ..++.++.|.++. +..|+++++|+|++.+|+....++
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~----~V~Vg-lr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD~~q~~v 76 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGV----NVIVG-LREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPDEVQPEV 76 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-----EEEEE-E-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-HHHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCC----CEEEE-ecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCChHHHHHH
Confidence 56899999999999999999999999 99988 67655 6677777898874 678999999999999999999999
Q ss_pred H-HHhchhcCCCCEEEEEcCCCCHHHHHHHhC--CCCEEEEccCchh
Q 024121 88 A-MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG--HSRFIRVMPNTPS 131 (272)
Q Consensus 88 ~-~~l~~~l~~~~~iis~~~~~~~~~l~~~~~--~~~~~~~~p~~~~ 131 (272)
+ +++.|+++++++++ ++.|..+.. ....+ +..++-+.|..|.
T Consensus 77 y~~~I~p~l~~G~~L~-fahGfni~~-~~i~pp~~vdV~mvAPKgpG 121 (165)
T PF07991_consen 77 YEEEIAPNLKPGATLV-FAHGFNIHY-GLIKPPKDVDVIMVAPKGPG 121 (165)
T ss_dssp HHHHHHHHS-TT-EEE-ESSSHHHHC-TTS---TTSEEEEEEESSSC
T ss_pred HHHHHHhhCCCCCEEE-eCCcchhhc-CcccCCCCCeEEEEecCCCC
Confidence 8 77999999998877 456654421 11111 3455656666554
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-11 Score=106.22 Aligned_cols=207 Identities=17% Similarity=0.158 Sum_probs=139.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC------HHHHHHHHHcCceeecCchhhhccCCEEEEeeCc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN------LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~------~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~ 81 (272)
...++|+|||+|.+|.+.|.+|...|+ +|.+- -|. .+..+++.+.|..+ .+..|++++||+|++.+|+
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGv----nVvvg-lr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPD 107 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGL----DISYA-LRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPD 107 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccc----eeEEe-ccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCCh
Confidence 456899999999999999999999999 88855 333 33455555678766 5788999999999999999
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhh-------cCCceEEE-eC--CCCCHHH
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAV-------GEAATVMS-LG--GTATEED 150 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~-------~~g~~~~~-~~--~~~~~~~ 150 (272)
..-..+.+++.++++++.++. .+-|..+..-.-..+ +..++-+-|-.|... +.|+..++ .- .+.+...
T Consensus 108 t~q~~v~~~i~p~LK~Ga~L~-fsHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~a 186 (487)
T PRK05225 108 KQHSDVVRAVQPLMKQGAALG-YSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEG 186 (487)
T ss_pred HHHHHHHHHHHhhCCCCCEEE-ecCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCCchH
Confidence 876677788999999998766 456665532211122 466777767655432 45655433 22 3456667
Q ss_pred HHHHHHHhhhcCCe---EE-c---Ccc---cchhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q 024121 151 GELIGKLFGSVGKI---WR-A---DEK---LFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMV 220 (272)
Q Consensus 151 ~~~v~~ll~~~G~~---~~-~---~e~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~ 220 (272)
.+.+..+-..+|.. +. . .|. .++.-+.++| .+....++..+...+.|.+++.|+..+..+.....+++
T Consensus 187 ~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG--~~~~~~~~~Fe~lve~G~~pe~A~k~~~~~~E~I~e~i 264 (487)
T PRK05225 187 MAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCG--MLQAGSLLCFDKLVAEGTDPAYAEKLIQFGWETITEAL 264 (487)
T ss_pred HHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHh--HHHHHHHHHHHHHHHcCCCHHHHHHHHhhhHHHHHHHH
Confidence 88888888898832 22 1 222 2333334441 12233345555677899999999987777766666665
Q ss_pred Hhc
Q 024121 221 TKS 223 (272)
Q Consensus 221 ~~~ 223 (272)
.+.
T Consensus 265 ~e~ 267 (487)
T PRK05225 265 KQG 267 (487)
T ss_pred Hhc
Confidence 443
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.8e-12 Score=97.59 Aligned_cols=108 Identities=21% Similarity=0.333 Sum_probs=87.3
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCc--------------hhhhccCCEEEEe
Q 024121 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN--------------NAVVEYSDVVVFS 78 (272)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~--------------~~~~~~aDivil~ 78 (272)
|+|+|+|.||..+|..|.+.|+ +|.++ .|++ +.+.+.+.|+.+.... .+....+|+||+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~----~V~l~-~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~ 74 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH----DVTLV-SRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVA 74 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC----EEEEE-ESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-
T ss_pred CEEECcCHHHHHHHHHHHHCCC----ceEEE-Eccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEE
Confidence 7899999999999999999999 99999 8988 7777777665432211 1346789999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-HHHHHHhCCCCEEEEc
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRVM 126 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-~~l~~~~~~~~~~~~~ 126 (272)
|+..+.+++++.+.+++.+++.|+.+.+|+.. +.+++.++..++...+
T Consensus 75 vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 75 VKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTGSGEEEEE
T ss_pred ecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCCCcEEEEE
Confidence 99999999999999999999899999999985 5677777644554433
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.1e-11 Score=101.77 Aligned_cols=181 Identities=14% Similarity=0.092 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-------HH-----------HHHHc-------------CceeecC--chh
Q 024121 21 MAESIAKGVAKSGVLPPDRICTAVHSNLKR-------RD-----------AFESI-------------GVKVLSD--NNA 67 (272)
Q Consensus 21 mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-------~~-----------~l~~~-------------g~~~~~~--~~~ 67 (272)
||..||..++.+|+ +|.+| |++++. ++ .+.+. .++.+.+ ..+
T Consensus 1 MG~giA~~~a~~G~----~V~l~-d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 75 (314)
T PRK08269 1 MGQGIALAFAFAGH----DVTLI-DFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAAD 75 (314)
T ss_pred CcHHHHHHHHhCCC----eEEEE-eCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHH
Confidence 79999999999999 99999 998842 11 11111 1333333 457
Q ss_pred hhccCCEEEEeeCcc-cH-HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCC
Q 024121 68 VVEYSDVVVFSVKPQ-VV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGG 144 (272)
Q Consensus 68 ~~~~aDivil~v~~~-~~-~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~ 144 (272)
++++||+||.|||.+ ++ ..++.++.+.+++++++.|.++++++..+++.+. ..++++.|+..|..... ..-+..++
T Consensus 76 a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~-lvEVv~g~ 154 (314)
T PRK08269 76 ALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMP-LVEVSPSD 154 (314)
T ss_pred HhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCc-eEEEeCCC
Confidence 789999999999855 44 4566778888899999999999999999988775 35788888876665433 23345677
Q ss_pred CCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 024121 145 TATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQT 212 (272)
Q Consensus 145 ~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~ 212 (272)
.++++.++.+.++++.+|+. +++++.. +.+ ..-.+...+.|++. .+.+.|+++++...++..+
T Consensus 155 ~t~~e~~~~~~~ll~~lGk~~v~v~d~~-Gfi---~nri~~~~l~EAl~-l~e~g~~~~e~iD~a~~~g 218 (314)
T PRK08269 155 ATDPAVVDRLAALLERIGKVPVVCGPSP-GYI---VPRIQALAMNEAAR-MVEEGVASAEDIDKAIRTG 218 (314)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEecCCC-Ccc---hHHHHHHHHHHHHH-HHHhCCCCHHHHHHHHHhC
Confidence 88999999999999999965 6666542 111 11222334445554 4567778888888777544
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=117.16 Aligned_cols=188 Identities=13% Similarity=0.157 Sum_probs=136.9
Q ss_pred EEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCHHHH---HHHhCC--CCEEEEccCchhh-----------hcCCce
Q 024121 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDL---QEWTGH--SRFIRVMPNTPSA-----------VGEAAT 138 (272)
Q Consensus 75 vil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l---~~~~~~--~~~~~~~p~~~~~-----------~~~g~~ 138 (272)
||+|+|+..+.+++.++.++++++++|.|+ ++++...+ .+.++. .++++.||....+ +.....
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv-~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDA-GSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEec-CcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 689999999999999999999888777765 55665443 344442 3588888863221 223346
Q ss_pred EEEeCCCCCHHHHHHHHHHhhhcCC-eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 024121 139 VMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG 215 (272)
Q Consensus 139 ~~~~~~~~~~~~~~~v~~ll~~~G~-~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g 215 (272)
++++.+..+++.++.++++++.+|. .+.+++++||.+++++ .|++++. +++....+.- +.+....+...+|++
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~---~l~~~~~~~~-~~~~~~~~a~~gfrd 155 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSF---ALVEQILGES-DAELKFSYAAGGFRD 155 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHH---HHHHHHhhcc-ChhHHHHhcccchhc
Confidence 6787777788899999999999995 5889999999999987 7777654 4443332221 455566889999999
Q ss_pred HHHHHHhcCCCHHHHHHhcCCCcchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024121 216 AASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~~~r~~~ 270 (272)
+++++. .+|.+|.+.+.++.....+.|+.+.+. .++..+. +.+.+.++++++
T Consensus 156 ~tRia~---~~p~lw~di~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 213 (673)
T PRK11861 156 FTRIAA---SSPEMWRDVCLANRAALLDELDAYTAVLARLRAAIDAGDGAALEAVFARSRA 213 (673)
T ss_pred cccccc---CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 998874 589999999999988877877777664 4555553 456666655543
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-10 Score=105.02 Aligned_cols=196 Identities=15% Similarity=0.120 Sum_probs=122.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC--CCCCCcEEEEeCCCHHHHHHHHHc-------------------CceeecCchhh
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSG--VLPPDRICTAVHSNLKRRDAFESI-------------------GVKVLSDNNAV 68 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g--~~~~~~V~v~~~r~~~~~~~l~~~-------------------g~~~~~~~~~~ 68 (272)
+|||+|||+|.+|..+|..|.+.| + +|+++ |+++++.+.+.+. .+..+++..++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~----~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~ 75 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDI----EVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKH 75 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCC----eEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHH
Confidence 589999999999999999999885 6 79999 9999998876541 13345556677
Q ss_pred hccCCEEEEeeC-cc--------------cHHHHHHHhchhcCCCCEEEEE--cCCCCHHHHHHHhC----CCC-EEEEc
Q 024121 69 VEYSDVVVFSVK-PQ--------------VVKDVAMQIRPLLSRKKLLVSV--AAGVKLKDLQEWTG----HSR-FIRVM 126 (272)
Q Consensus 69 ~~~aDivil~v~-~~--------------~~~~v~~~l~~~l~~~~~iis~--~~~~~~~~l~~~~~----~~~-~~~~~ 126 (272)
+++||++|+||| |. .+.+++.+|.++++++++||-- ..+-+.+.+.+.+. +.. .+...
T Consensus 76 i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~ 155 (473)
T PLN02353 76 VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSN 155 (473)
T ss_pred HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEEC
Confidence 899999999994 21 4677888899999889888732 22222344444332 111 12222
Q ss_pred cC-----chhhhcCCc-eEEEeCCC--CCHHHHHHHHHHhhhcC--CeEEcCcccchhHHHchHHHH---HHHHHHHHHH
Q 024121 127 PN-----TPSAVGEAA-TVMSLGGT--ATEEDGELIGKLFGSVG--KIWRADEKLFDAITGLSGPAY---IFLAIEALAD 193 (272)
Q Consensus 127 p~-----~~~~~~~g~-~~~~~~~~--~~~~~~~~v~~ll~~~G--~~~~~~e~~~~~~~~~~~~~~---~~~~~~~l~~ 193 (272)
|- ....-.... -++..+.+ ..++..+.++.+++.+- ..+....-....++++..+.| -..+++.++.
T Consensus 156 PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~ 235 (473)
T PLN02353 156 PEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (473)
T ss_pred CCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 111111111 12323321 11445788888888774 234444333455556553333 2346677777
Q ss_pred HHHHcCCCHHHHHHHHH
Q 024121 194 GGVAAGLPRELALGLAS 210 (272)
Q Consensus 194 ~~~~~Gl~~~~a~~~~~ 210 (272)
.+.+.|+|..+..+.+.
T Consensus 236 lce~~giD~~eV~~~~~ 252 (473)
T PLN02353 236 LCEATGADVSQVSHAVG 252 (473)
T ss_pred HHHHhCCCHHHHHHHhC
Confidence 88899999887765544
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.5e-10 Score=95.46 Aligned_cols=245 Identities=18% Similarity=0.225 Sum_probs=148.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cC-ceeecCchhhhc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE 70 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~ 70 (272)
|||+|||+|-.|...+.+|.+.|| +|... |.++++.+.+.+ .| +..++|..++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GH----eVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~ 75 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGH----EVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVK 75 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHh
Confidence 899999999999999999999999 99999 999999876654 12 456778888899
Q ss_pred cCCEEEEeeC--cc--------cHHHHHHHhchhcCCCCEEEEEcCCCC---HHHHHHHhC-C--CCEEEEccCchhhhc
Q 024121 71 YSDVVVFSVK--PQ--------VVKDVAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTG-H--SRFIRVMPNTPSAVG 134 (272)
Q Consensus 71 ~aDivil~v~--~~--------~~~~v~~~l~~~l~~~~~iis~~~~~~---~~~l~~~~~-~--~~~~~~~p~~~~~~~ 134 (272)
++|++|+||+ ++ .++.+.+.+.++++..++||. -|+++ .+.+++.+. . .+-..+.. .|.-.+
T Consensus 76 ~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~-KSTVPvGt~~~v~~~i~~~~~~~~f~v~~-NPEFLR 153 (414)
T COG1004 76 DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVI-KSTVPVGTTEEVRAKIREENSGKDFEVAS-NPEFLR 153 (414)
T ss_pred cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEE-cCCCCCCchHHHHHHHHhhcccCCceEec-ChHHhc
Confidence 9999999994 32 356777888888866666663 23444 345555443 1 11111111 244344
Q ss_pred CCceE--------EEeCCCCCHHHHHHHHHHhhhc---CCeEEcCcccchhHHHchHHHHHH---HHHHHHHHHHHHcCC
Q 024121 135 EAATV--------MSLGGTATEEDGELIGKLFGSV---GKIWRADEKLFDAITGLSGPAYIF---LAIEALADGGVAAGL 200 (272)
Q Consensus 135 ~g~~~--------~~~~~~~~~~~~~~v~~ll~~~---G~~~~~~e~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~Gl 200 (272)
+|..+ +..|. .++.+.+.+++++..+ ...+......-..+.+...++|++ .+++.+.+.+++.|+
T Consensus 154 EG~Av~D~~~PdRIViG~-~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~ 232 (414)
T COG1004 154 EGSAVYDFLYPDRIVIGV-RSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGA 232 (414)
T ss_pred CcchhhhccCCCeEEEcc-CChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44321 12232 1334567777787665 333333322223444444556654 366777788899999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 024121 201 PRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSR 269 (272)
Q Consensus 201 ~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l~~l~~~~~~~~~~~~~~~~~~r~~ 269 (272)
|-.+..+.+..--+=...+ .+.|.. -..-|-|+ =|.+.++..++.+....+.+++.+..++-+
T Consensus 233 D~~~V~~gIGlD~RIG~~f-l~aG~G----yGGsCfPK-D~~AL~~~a~~~~~~~~ll~avv~vN~~qk 295 (414)
T COG1004 233 DVKQVAEGIGLDPRIGNHF-LNAGFG----YGGSCFPK-DTKALIANAEELGYDPNLLEAVVEVNERRK 295 (414)
T ss_pred CHHHHHHHcCCCchhhHhh-CCCCCC----CCCcCCcH-hHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 9877655443211111111 111111 01122232 255667777888888888888877776644
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.7e-11 Score=94.16 Aligned_cols=94 Identities=20% Similarity=0.313 Sum_probs=67.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------------------cCceeecCchhhhc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------------------IGVKVLSDNNAVVE 70 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------------------~g~~~~~~~~~~~~ 70 (272)
|||+|||+|.+|..+|..|.++|| +|+++ |.++++.+.+.+ .++..+.+..+++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~----~V~g~-D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~ 75 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH----QVIGV-DIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK 75 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS----EEEEE--S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCC----EEEEE-eCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh
Confidence 899999999999999999999999 99999 999998877654 12345667778899
Q ss_pred cCCEEEEeeCcc----------cHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 71 YSDVVVFSVKPQ----------VVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 71 ~aDivil~v~~~----------~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
++|++|+|||.. .+.++++++.++++++++||- -+++++
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~-~STvpp 124 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI-ESTVPP 124 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE-SSSSST
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE-ccEEEE
Confidence 999999999621 267788899999999888773 344443
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-09 Score=86.79 Aligned_cols=240 Identities=14% Similarity=0.086 Sum_probs=145.6
Q ss_pred CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEe
Q 024121 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~ 78 (272)
|.++......+.++|||+|..|.+...+-.+.++ ... +. .|++++++.|.+ .+... .+.+...+-.+++|.-
T Consensus 1 ~~s~~~~~~~v~~~~vgtgrl~ra~~~ra~h~~~----~cs~i~-srS~~~a~~LaE~~~a~p-~d~~~~ael~~~vfv~ 74 (289)
T COG5495 1 MVSDGLRPARVVVGIVGTGRLGRAALLRADHVVV----ACSAIS-SRSRDRAQNLAETYVAPP-LDVAKSAELLLLVFVD 74 (289)
T ss_pred CcCcCccceeeEEEEeecchHHHHHHHHhcchhe----eehhhh-hcCHHHHhhchhccCCCc-cchhhChhhhceEEec
Confidence 5566666667899999999999996555555554 433 44 888888888776 33322 2333445567888888
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCch-----hhhc--CCceEEEeCCCCCHHH
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTP-----SAVG--EAATVMSLGGTATEED 150 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~-----~~~~--~g~~~~~~~~~~~~~~ 150 (272)
+|+..+..+...-. .+|++++++|++....+.+.+.-. ++--..+||+.. .... .+.. + .....|+-.
T Consensus 75 vpd~~~s~vaa~~~--~rpg~iv~HcSga~~~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~-~-~i~eaD~~g 150 (289)
T COG5495 75 VPDALYSGVAATSL--NRPGTIVAHCSGANGSGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTI-F-GITEADDVG 150 (289)
T ss_pred chHHHHHHHHHhcc--cCCCeEEEEccCCCchhhhhhhhhcCCcceeecccccccCCHHHHHhCcccE-E-Eeecccccc
Confidence 88886666654433 479999999977666666655322 344456677532 1111 1221 1 222345666
Q ss_pred HHHHHHHhhhcC-CeEEcCcccchhHHHch--HHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024121 151 GELIGKLFGSVG-KIWRADEKLFDAITGLS--GPAYIF-LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKH 226 (272)
Q Consensus 151 ~~~v~~ll~~~G-~~~~~~e~~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~ 226 (272)
...++++...+| ..+.+.+++.-.+.+.. ..+|+. .+.+++ +..+..|+|..++.--+.+.+.|+.+..++++..
T Consensus 151 ~ai~q~la~emgg~~f~V~~~~r~lYHaaa~~asnf~v~~l~~a~-~i~~aag~Dq~e~iv~~~pL~~g~~~n~~qrg~a 229 (289)
T COG5495 151 YAIVQSLALEMGGEPFCVREEARILYHAAAVHASNFIVTVLADAL-EIYRAAGDDQPELIVEVGPLARGALENTLQRGQA 229 (289)
T ss_pred cHHHHHHHHHhCCCceeechhHHHHHHHHHHHhhccHHHHHHHHH-HHHHHhcCCCcceeeeehHHHHHHHHHHHHhhhh
Confidence 788999999998 45777776544443322 333333 333332 3456788886665544566788888777664432
Q ss_pred HHHHHHhcCCC-cchHHHHHHHHHhCC
Q 024121 227 PGQLKDDVASP-GGTTIAGIHELEKSG 252 (272)
Q Consensus 227 ~~~l~~~~~~~-~g~t~~~l~~l~~~~ 252 (272)
-.+..-+.-- ++..++.+..|++-+
T Consensus 230 -~aLTgpVaRGD~~vve~hl~al~~ig 255 (289)
T COG5495 230 -CALTGPVARGDWQVVEEHLRALEKIG 255 (289)
T ss_pred -hcccCCcccCcHHHHHHHHHHHHHhh
Confidence 1344444332 246677788887753
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-10 Score=97.33 Aligned_cols=104 Identities=17% Similarity=0.254 Sum_probs=79.7
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-H
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~ 84 (272)
.....++|||||+|+||+++|+.|...|+ +|.+| +|+++..... .....+..+++++||+|++++|... .
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~----~V~~~-d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t 212 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA----TITAY-DAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKES 212 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-eCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHH
Confidence 34566899999999999999999999999 99999 9987653321 2234578899999999999998653 3
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
..++ .++.+.++++.++|+++-|. ..+.+.+.+.
T Consensus 213 ~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 4444 56777789999999987664 3455666665
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.2e-11 Score=95.43 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=117.3
Q ss_pred CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------c------------
Q 024121 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I------------ 57 (272)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~------------ 57 (272)
|++-.++..++.++|||.|.||+.||+--+.+|+ +|+++ ++++..+.+..+ .
T Consensus 2 ~s~s~~~~~~~~V~ivGaG~MGSGIAQv~a~sg~----~V~l~-d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~ 76 (298)
T KOG2304|consen 2 MSASANMAEIKNVAIVGAGQMGSGIAQVAATSGL----NVWLV-DANEDALSRATKAISSSLKRVAKKKKADDPVALEEF 76 (298)
T ss_pred cccccccccccceEEEcccccchhHHHHHHhcCC----ceEEe-cCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHH
Confidence 4555667677889999999999999999999999 99999 999876544322 0
Q ss_pred ------CceeecCchhhhccCCEEEEeeC--cccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccC
Q 024121 58 ------GVKVLSDNNAVVEYSDVVVFSVK--PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPN 128 (272)
Q Consensus 58 ------g~~~~~~~~~~~~~aDivil~v~--~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~ 128 (272)
-++.+++..+++.++|+||-++- -+.-++++.++....++++++.+.++++.+.++...+. ..++.+.|..
T Consensus 77 v~~~l~ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFf 156 (298)
T KOG2304|consen 77 VDDTLDRIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFF 156 (298)
T ss_pred HHHHHHHHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeecc
Confidence 01234566778889999998862 23345777777776778888888888888888877665 3567777755
Q ss_pred chhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeE
Q 024121 129 TPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIW 165 (272)
Q Consensus 129 ~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~ 165 (272)
.|..+-.-+.++ .++..+++++..+..+-+++|+..
T Consensus 157 NPvPvMKLvEVi-r~~~TS~eTf~~l~~f~k~~gKtt 192 (298)
T KOG2304|consen 157 NPVPVMKLVEVI-RTDDTSDETFNALVDFGKAVGKTT 192 (298)
T ss_pred CCchhHHHhhhh-cCCCCCHHHHHHHHHHHHHhCCCc
Confidence 555443333333 456678999999999999999763
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-09 Score=92.69 Aligned_cols=151 Identities=19% Similarity=0.228 Sum_probs=97.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC--C-CCCCcEEEEeCCCHHH---HHHHHH------------------cCceeec
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSG--V-LPPDRICTAVHSNLKR---RDAFES------------------IGVKVLS 63 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g--~-~~~~~V~v~~~r~~~~---~~~l~~------------------~g~~~~~ 63 (272)
++..||+|||.|+||+++++.+.++- + .-..+|..| -+..+. .+.|-+ .++.+.+
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmw-v~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMW-VFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEE-EeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence 34579999999999999999887642 1 012367777 332211 112211 2345667
Q ss_pred CchhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCHH-----------HHHHHhCCCCEEEE-ccCchh
Q 024121 64 DNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK-----------DLQEWTGHSRFIRV-MPNTPS 131 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~-----------~l~~~~~~~~~~~~-~p~~~~ 131 (272)
|..+++.+||+++..+|++.+..++++|..+++++...||+..|+... .+.+.++ .++.-. -||...
T Consensus 98 dl~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lg-I~~~vL~GaNiA~ 176 (372)
T KOG2711|consen 98 DLVEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALG-IPCSVLMGANIAS 176 (372)
T ss_pred hHHHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhC-CCceeecCCchHH
Confidence 889999999999999999999999999999999999999999887642 2334444 232222 256555
Q ss_pred hhcCCc---eEEEeCCCCCHHHHHHHHHHhhhcC
Q 024121 132 AVGEAA---TVMSLGGTATEEDGELIGKLFGSVG 162 (272)
Q Consensus 132 ~~~~g~---~~~~~~~~~~~~~~~~v~~ll~~~G 162 (272)
++.+.. +.+.+.+ +.+.-..+..+|+.-.
T Consensus 177 EVa~~~f~e~tIg~~~--~~~~~~~l~~lf~~p~ 208 (372)
T KOG2711|consen 177 EVANEKFCETTIGYKD--KKEAGILLKKLFRTPY 208 (372)
T ss_pred HHHhccccceeEeccc--hhhcchHHHHHhCCCc
Confidence 553322 2333221 2333345788887655
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.2e-09 Score=88.89 Aligned_cols=192 Identities=19% Similarity=0.252 Sum_probs=122.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cC-ceeecCchhhhc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE 70 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~ 70 (272)
++||+||+|-+|.++|..+.++|+ +|..+ |.++.+.+.+.+ .| ++.+++.++ ++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~----~ViG~-DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~ 83 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF----KVIGV-DINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LK 83 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC----ceEeE-eCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cc
Confidence 899999999999999999999999 99999 999988766543 12 455666655 56
Q ss_pred cCCEEEEeeCcc----------cHHHHHHHhchhcCCCCEEE--EEcCCCCHHHHHHHh-C---C----CCE-E-----E
Q 024121 71 YSDVVVFSVKPQ----------VVKDVAMQIRPLLSRKKLLV--SVAAGVKLKDLQEWT-G---H----SRF-I-----R 124 (272)
Q Consensus 71 ~aDivil~v~~~----------~~~~v~~~l~~~l~~~~~ii--s~~~~~~~~~l~~~~-~---~----~~~-~-----~ 124 (272)
.||++++|||.. .+.+..+.|.+.|++|.+|| |++-.-+.+.+...+ . + ..+ + |
T Consensus 84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPER 163 (436)
T COG0677 84 ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPER 163 (436)
T ss_pred cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccc
Confidence 999999999631 24556677899999999988 333322344433222 1 1 122 1 3
Q ss_pred EccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCC-eEEcCcccchhHHHchHHHH---HHHHHHHHHHHHHHcCC
Q 024121 125 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLSGPAY---IFLAIEALADGGVAAGL 200 (272)
Q Consensus 125 ~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~-~~~~~e~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~Gl 200 (272)
.+|+.....-....=+..| .+++..+.+..+.+.+=. .+.++......+.++.-+.| -..+++.|+-.+.+.|+
T Consensus 164 v~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GI 241 (436)
T COG0677 164 VLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGI 241 (436)
T ss_pred cCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCC
Confidence 3343322111111113334 367788888888888753 45555554445555541111 12345566667789999
Q ss_pred CHHHHHHHHH
Q 024121 201 PRELALGLAS 210 (272)
Q Consensus 201 ~~~~a~~~~~ 210 (272)
+.-++.+++.
T Consensus 242 dvwevIeaAn 251 (436)
T COG0677 242 DVWEVIEAAN 251 (436)
T ss_pred cHHHHHHHhc
Confidence 9877766654
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.2e-08 Score=79.33 Aligned_cols=156 Identities=20% Similarity=0.202 Sum_probs=111.8
Q ss_pred CCeEEEEcccHH--------------------HHHHHHHHHhCCCCCCCcEEEEeCCCH-----HHHHHHHHcCceeecC
Q 024121 10 SFILGFIGAGKM--------------------AESIAKGVAKSGVLPPDRICTAVHSNL-----KRRDAFESIGVKVLSD 64 (272)
Q Consensus 10 ~~~IgiIG~G~m--------------------G~~la~~l~~~g~~~~~~V~v~~~r~~-----~~~~~l~~~g~~~~~~ 64 (272)
+|||++.|+||- |+.||-.+.++|| +|.+. +.|. +..++....|+.+.+|
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGH----DVVLa-ePn~d~~dd~~w~~vedAGV~vv~d 75 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGH----DVVLA-EPNRDIMDDEHWKRVEDAGVEVVSD 75 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCC----cEEee-cCCccccCHHHHHHHHhcCcEEecC
Confidence 478999999974 7889999999999 99998 7654 3456666689999999
Q ss_pred chhhhccCCEEEEeeCcc-cHHHHHHHhchhcCCCCEEEEEcCCCCHH---HHHHHhC----CCCEEEEccC-chhhhcC
Q 024121 65 NNAVVEYSDVVVFSVKPQ-VVKDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG----HSRFIRVMPN-TPSAVGE 135 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~-~~~~v~~~l~~~l~~~~~iis~~~~~~~~---~l~~~~~----~~~~~~~~p~-~~~~~~~ 135 (272)
..++++++++.++-+|-. ..-.+...|.+++..+.+|++++...+.. .++..+. +..+...||. .|..-.+
T Consensus 76 D~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h 155 (340)
T COG4007 76 DAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQH 155 (340)
T ss_pred chhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCC
Confidence 899999999999999966 67788889999998998888765543332 2333332 2334455542 2333345
Q ss_pred CceEEEeC-----CCCCHHHHHHHHHHhhhcCCe-EEcCcc
Q 024121 136 AATVMSLG-----GTATEEDGELIGKLFGSVGKI-WRADEK 170 (272)
Q Consensus 136 g~~~~~~~-----~~~~~~~~~~v~~ll~~~G~~-~~~~e~ 170 (272)
+..++... +-.++++.+++.++.+..|+. +.++.+
T Consensus 156 ~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~pad 196 (340)
T COG4007 156 GHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPAD 196 (340)
T ss_pred ceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHH
Confidence 55554411 114678999999999999987 555543
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-10 Score=89.96 Aligned_cols=93 Identities=17% Similarity=0.283 Sum_probs=69.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHH-cCc----eeecCchhhhccCCEEEEeeCc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES-IGV----KVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~-~g~----~~~~~~~~~~~~aDivil~v~~ 81 (272)
.+.++|+|||+|.||.++++.|.+.| + +|++| +|++++.+++.+ .+. ....+..++++++|+||.|+|+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~----~v~v~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~ 91 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAA----KIVIV-NRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPV 91 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCC----EEEEE-cCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCC
Confidence 45689999999999999999999986 5 89999 999988877665 332 1334566778899999999988
Q ss_pred ccH--HHHHHHhchhcCCCCEEEEEcC
Q 024121 82 QVV--KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 82 ~~~--~~v~~~l~~~l~~~~~iis~~~ 106 (272)
... ..+... ...+++++++++++.
T Consensus 92 ~~~~~~~~~~~-~~~~~~~~~v~D~~~ 117 (155)
T cd01065 92 GMKPGDELPLP-PSLLKPGGVVYDVVY 117 (155)
T ss_pred CCCCCCCCCCC-HHHcCCCCEEEEcCc
Confidence 764 222111 123578888888743
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.1e-10 Score=97.56 Aligned_cols=107 Identities=15% Similarity=0.235 Sum_probs=82.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|+||+.+++.|..-|. +|.+| +|+....+.....|+....+.++++++||+|++++|.. +.+
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~----~V~~~-dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~ 263 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV----KLHYT-DRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETE 263 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHH
Confidence 3566899999999999999999999999 99999 99864333333467765678899999999999999854 566
Q ss_pred HHHH-HhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.++. +....++++.++|++.-|- ..+.|.+.+.
T Consensus 264 ~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 264 HLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALE 299 (385)
T ss_pred HHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHH
Confidence 7764 4666789999999886553 3355655554
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=96.76 Aligned_cols=107 Identities=16% Similarity=0.195 Sum_probs=83.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~~ 85 (272)
....++|||||+|+||..+++.|..-|. +|.+| +|+....+...+.|+....+.++++++||+|++++|. ...+
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~----~V~~~-d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~ 270 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNC----NLLYH-DRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTR 270 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCC----EEEEE-CCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHH
Confidence 4567899999999999999999999998 99999 9875444444446776666889999999999999985 4566
Q ss_pred HHHH-HhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.++. ++...++++.++|++.-|- ..+.+.+.+.
T Consensus 271 ~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 306 (386)
T PLN03139 271 GMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACS 306 (386)
T ss_pred HHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHH
Confidence 6663 4666789999999886553 3455666664
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=94.34 Aligned_cols=105 Identities=21% Similarity=0.244 Sum_probs=79.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|+||+.+|+.|...|+ +|.+| +|++... .....++.. .+.++++++||+|++++|.. ..+
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~----~V~~~-d~~~~~~-~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~ 219 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM----RILYY-SRTRKPE-AEKELGAEY-RPLEELLRESDFVSLHVPLTKETY 219 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCCChh-hHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHHh
Confidence 4567899999999999999999999998 99999 9986443 222345543 47889999999999999854 455
Q ss_pred HHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 86 DVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 86 ~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.++ .+....++++.++|+++-|- ..+.+.+.+.
T Consensus 220 ~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 220 HMINEERLKLMKPTAILVNTARGKVVDTKALVKALK 255 (333)
T ss_pred hccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH
Confidence 555 35666788999999886553 3456666665
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=92.52 Aligned_cols=89 Identities=15% Similarity=0.268 Sum_probs=69.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEE-EEeCCCHHHHHHHHH-cCc-eeecCchhhhccCCEEEEeeCcc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~--g~~~~~~V~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~~aDivil~v~~~ 82 (272)
|+.+||||||+|.||..++..|.+. ++ ++. +| +|++++.+.+.+ .|. ..+.+.++++.++|+|++|+|++
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~----el~aV~-dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~ 78 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGL----TLSAVA-VRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS 78 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCe----EEEEEE-CCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH
Confidence 3568999999999999999999873 55 665 77 999998877766 453 45678888889999999999998
Q ss_pred cHHHHHHHhchhcCCCCEEEEE
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~ 104 (272)
...++..+.. ..++.++..
T Consensus 79 ~h~e~~~~aL---~aGk~Vi~~ 97 (271)
T PRK13302 79 VLRAIVEPVL---AAGKKAIVL 97 (271)
T ss_pred HHHHHHHHHH---HcCCcEEEe
Confidence 8877776554 345544533
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-09 Score=91.26 Aligned_cols=81 Identities=22% Similarity=0.324 Sum_probs=65.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCc-EEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~-V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
+|||||||+|+||..++..+.+.+. . .+ +.+| +|++++.+.+.+ .+.....+.++++.++|+|++|+|++...++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~-~-~elv~v~-d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~~ 77 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRI-N-AELYAFY-DRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEEV 77 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCC-C-eEEEEEE-CCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHHH
Confidence 3799999999999999999987641 1 14 5578 999998888766 5677778888888899999999999888887
Q ss_pred HHHhch
Q 024121 88 AMQIRP 93 (272)
Q Consensus 88 ~~~l~~ 93 (272)
..++..
T Consensus 78 ~~~al~ 83 (265)
T PRK13304 78 VPKSLE 83 (265)
T ss_pred HHHHHH
Confidence 776553
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.8e-09 Score=88.07 Aligned_cols=193 Identities=16% Similarity=0.216 Sum_probs=127.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---cC--ceeecCchhh---hccCCEEEEeeCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---IG--VKVLSDNNAV---VEYSDVVVFSVKP 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~g--~~~~~~~~~~---~~~aDivil~v~~ 81 (272)
.+.||.||++.||+.++.+..++|| .|.+| ||+..+.+++.+ .| +....++++. +++...|++.|+.
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf----~v~~y-NRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkA 80 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGF----TVCAY-NRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKA 80 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCc----eEEEe-ccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeC
Confidence 3689999999999999999999999 99999 999999988776 23 3334666665 4578899999976
Q ss_pred c-cHHHHHHHhchhcCCCCEEEEEcCCCCHHH---HHHHhC-CCCEEEEc-cCchhhhcCCceEEEeCCCCCHHHHHHHH
Q 024121 82 Q-VVKDVAMQIRPLLSRKKLLVSVAAGVKLKD---LQEWTG-HSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELIG 155 (272)
Q Consensus 82 ~-~~~~v~~~l~~~l~~~~~iis~~~~~~~~~---l~~~~~-~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~~~~~~~v~ 155 (272)
. .+...+++|.|++.++.+||+--+..-.+. .++... +.-++++- .+.-.-.+.|..++ +| ++++..+.++
T Consensus 81 G~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlM-pG--g~~~Awp~ik 157 (487)
T KOG2653|consen 81 GAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLM-PG--GSKEAWPHIK 157 (487)
T ss_pred CCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccC-CC--CChHHHHHHH
Confidence 5 578888999999999999998544332222 222222 22244321 11111113344544 34 4789999999
Q ss_pred HHhhhcC-------Ce-EEcCcccchhHHHch--HHHH--HHHHHHHHHHHHHH-cCCCHHHHHHHHHH
Q 024121 156 KLFGSVG-------KI-WRADEKLFDAITGLS--GPAY--IFLAIEALADGGVA-AGLPRELALGLASQ 211 (272)
Q Consensus 156 ~ll~~~G-------~~-~~~~e~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~-~Gl~~~~a~~~~~~ 211 (272)
++|+.+. .+ .++++...+.+.+.+ +.-| +..+.|+.- ..++ .|++.++..++...
T Consensus 158 ~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~-vlk~~~gls~~eia~vF~~ 225 (487)
T KOG2653|consen 158 DIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYD-VLKSVLGLSNDEIAEVFDD 225 (487)
T ss_pred HHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHH-HHHHhcCCcHHHHHHHHHh
Confidence 9998652 22 567887777777766 3222 123334432 2344 77887776666543
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=95.19 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=75.8
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~ 84 (272)
.....++|||||+|+||+++++.|. ..|. +|++| ++++.... ..++....+.++++++||+|++++|....
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~----~V~~~-d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~ 213 (332)
T PRK08605 142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGS----DVVAY-DPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKY 213 (332)
T ss_pred ceeCCCEEEEECCCHHHHHHHHHHHhcCCC----EEEEE-CCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcc
Confidence 3456789999999999999999994 4577 89999 98764421 12344445788999999999999987643
Q ss_pred -HHHH-HHhchhcCCCCEEEEEcCCCCH--HHHHHHhC
Q 024121 85 -KDVA-MQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG 118 (272)
Q Consensus 85 -~~v~-~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~ 118 (272)
+.++ .+..+.++++.++|+++.|... +.+.+.+.
T Consensus 214 t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~ 251 (332)
T PRK08605 214 NHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALD 251 (332)
T ss_pred hhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 3333 3455668899999998876543 44544443
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-07 Score=81.79 Aligned_cols=137 Identities=17% Similarity=0.270 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee--------------cCchhhhccCCEEEEeeCcccHH
Q 024121 20 KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--------------SDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 20 ~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--------------~~~~~~~~~aDivil~v~~~~~~ 85 (272)
.||+.+|..|.++|+ +|+++ .|+ ++.+.+.+.|+.+. .++++ ..++|+||+|||..++.
T Consensus 1 aiG~~~a~~L~~~G~----~V~l~-~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~~~ 73 (293)
T TIGR00745 1 AVGSLYGAYLARAGH----DVTLL-ARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQTE 73 (293)
T ss_pred CchHHHHHHHHhCCC----cEEEE-ecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchhHH
Confidence 379999999999999 99999 997 66777766554321 12233 56899999999999999
Q ss_pred HHHHHhchhcCCCCEEEEEcCCCCH-HHHHHHhCCCCEEEEccC------chhh---hcCCceEEEeCCCCCHHHHHHHH
Q 024121 86 DVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRVMPN------TPSA---VGEAATVMSLGGTATEEDGELIG 155 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~~~~~-~~l~~~~~~~~~~~~~p~------~~~~---~~~g~~~~~~~~~~~~~~~~~v~ 155 (272)
++++.+.+++.++++|+++.+|+.. +.+.+.++..+++..... .|.. .+.+...+...+. ..+..+.+.
T Consensus 74 ~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~-~~~~~~~l~ 152 (293)
T TIGR00745 74 EAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVG-ENEAVEALA 152 (293)
T ss_pred HHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCC-chHHHHHHH
Confidence 9999999999999999999999875 567776663344322211 1111 1222222222111 224556777
Q ss_pred HHhhhcCCe
Q 024121 156 KLFGSVGKI 164 (272)
Q Consensus 156 ~ll~~~G~~ 164 (272)
++|+..|..
T Consensus 153 ~~l~~~~~~ 161 (293)
T TIGR00745 153 ELLNEAGIP 161 (293)
T ss_pred HHHHhCCCC
Confidence 788777744
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-09 Score=85.46 Aligned_cols=107 Identities=18% Similarity=0.293 Sum_probs=76.2
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
+....++|||||+|++|+.+++.+..-|. +|.+| +|+..........++.. .+.++++++||+|++++|.. ..
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~----~V~~~-d~~~~~~~~~~~~~~~~-~~l~ell~~aDiv~~~~plt~~T 105 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM----RVIGY-DRSPKPEEGADEFGVEY-VSLDELLAQADIVSLHLPLTPET 105 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT-----EEEEE-ESSCHHHHHHHHTTEEE-SSHHHHHHH-SEEEE-SSSSTTT
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc----eeEEe-cccCChhhhccccccee-eehhhhcchhhhhhhhhcccccc
Confidence 34456899999999999999999999999 99999 99876655445566644 58899999999999999843 23
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
+.++ .+....++++.++|++.-| +..+.+.+.+.
T Consensus 106 ~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 106 RGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp TTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred ceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 3333 2334457889999987654 34456666664
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-08 Score=87.13 Aligned_cols=92 Identities=14% Similarity=0.254 Sum_probs=71.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee--cCchhhhccCCEEEEeeCcccH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~aDivil~v~~~~~ 84 (272)
....++++|||+|.||.++++.|...|. +|+++ +|++++...+.+.|.... .+..+.++++|+||.++|...+
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~----~V~v~-~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii 222 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA----RVFVG-ARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVL 222 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHh
Confidence 3456899999999999999999999998 99999 999987776666665433 3456778899999999986533
Q ss_pred HHHHHHhchhcCCCCEEEEEcC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~ 106 (272)
. .+..+.++++.++|++.+
T Consensus 223 ~---~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 223 T---ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred C---HHHHhcCCCCeEEEEeCc
Confidence 2 223344678889998864
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.5e-09 Score=88.28 Aligned_cols=101 Identities=16% Similarity=0.242 Sum_probs=75.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-eecCchhhhccCCEEEEeeCcc-cH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
....++|||||+|+||+.+++.+..-|+ +|.+| +|+... .++. ...+.++++++||+|++++|.. +.
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~----~V~~~-~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T 187 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGM----NIYAY-TRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDET 187 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchh
Confidence 4456899999999999999998887798 99999 987432 2332 2457889999999999999854 45
Q ss_pred HHHHH-HhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 85 KDVAM-QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~~-~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
+.++. +....++++.++|+++-|- ..+.+.+.+.
T Consensus 188 ~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~ 224 (303)
T PRK06436 188 RGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLR 224 (303)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 55553 3555678999999886553 3456666554
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=93.79 Aligned_cols=106 Identities=17% Similarity=0.266 Sum_probs=80.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|+||+.+|+.+..-|. +|.+| +|... .+.....|+....+.++++++||+|++++|.. +.+
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~----~V~~~-d~~~~-~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~ 208 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAFGM----KVLAY-DPYIS-PERAEQLGVELVDDLDELLARADFITVHTPLTPETR 208 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCCCC-hhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhc
Confidence 4566899999999999999999999998 99999 98532 22333467766667899999999999999854 455
Q ss_pred HHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 86 DVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 86 ~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.++ .+....++++.++|+++-|- ..+.|.+.+.
T Consensus 209 ~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 244 (525)
T TIGR01327 209 GLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALE 244 (525)
T ss_pred cCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHH
Confidence 555 34455678999999887553 4456666665
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-08 Score=88.24 Aligned_cols=104 Identities=19% Similarity=0.238 Sum_probs=76.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~ 86 (272)
...++|||||+|+||+.+++.|..-|+ +|.+| +|++++...... .....+.++++++||+|++++|.. +.+.
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG~----~V~~~-~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~ 206 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWGF----PLRCW-SRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVG 206 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHH
Confidence 456899999999999999999999999 99999 987643211111 111246788899999999999854 5666
Q ss_pred HHH-HhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 87 VAM-QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 87 v~~-~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
++. +....++++.++|++.-|- ..+.|.+.+.
T Consensus 207 li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 207 IINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALD 241 (312)
T ss_pred HhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHh
Confidence 664 4556688999999886553 4456666665
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=92.67 Aligned_cols=105 Identities=14% Similarity=0.234 Sum_probs=80.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|+||+.+++.+..-|+ +|.+| +|.... +.....|+... +.++++++||+|++++|.. ..+
T Consensus 137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~----~V~~~-d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~ 209 (526)
T PRK13581 137 ELYGKTLGIIGLGRIGSEVAKRAKAFGM----KVIAY-DPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETR 209 (526)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhh
Confidence 3456899999999999999999999999 99999 986422 23334677665 7899999999999999864 556
Q ss_pred HHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 86 DVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 86 ~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.++ .+....++++.++|+++-|- ..+.|.+.+.
T Consensus 210 ~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 245 (526)
T PRK13581 210 GLIGAEELAKMKPGVRIINCARGGIIDEAALAEALK 245 (526)
T ss_pred cCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHh
Confidence 666 34566678999999886553 4456666664
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.6e-08 Score=70.77 Aligned_cols=100 Identities=21% Similarity=0.373 Sum_probs=73.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cCceeecCchhhhc--cCCEEEEeeCcccHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDivil~v~~~~~~~ 86 (272)
+||+|||+|.+|......+.+... ..++. ++ ++++++.+.+.+ .|+..++|.+++++ +.|+|++|+|+....+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~--~~~v~~v~-d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~ 77 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSP--DFEVVAVC-DPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE 77 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTT--TEEEEEEE-CSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCC--CcEEEEEE-eCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH
Confidence 589999999999999988888732 11554 67 999999888765 78888889999887 7999999999987777
Q ss_pred HHHHhchhcCCCC-EEEEEcCCCCHHHHHHH
Q 024121 87 VAMQIRPLLSRKK-LLVSVAAGVKLKDLQEW 116 (272)
Q Consensus 87 v~~~l~~~l~~~~-~iis~~~~~~~~~l~~~ 116 (272)
++..... .|+ +++.---+.+.++.++.
T Consensus 78 ~~~~~l~---~g~~v~~EKP~~~~~~~~~~l 105 (120)
T PF01408_consen 78 IAKKALE---AGKHVLVEKPLALTLEEAEEL 105 (120)
T ss_dssp HHHHHHH---TTSEEEEESSSSSSHHHHHHH
T ss_pred HHHHHHH---cCCEEEEEcCCcCCHHHHHHH
Confidence 7665543 333 44442223355555443
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.8e-08 Score=85.37 Aligned_cols=89 Identities=16% Similarity=0.250 Sum_probs=65.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHHc----C--ceeecCchhhhccCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFESI----G--VKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~aDivil~v~~ 81 (272)
+.++|+|||+|.||..++..+.. .+. .+|++| +|++++.+.+.+. | +.++.+..+++.++|+|+.|++.
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~---~~V~V~-~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPI---KQVRVW-GRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLS 199 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCC---CEEEEE-cCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCC
Confidence 56789999999999999986665 232 389999 9999998887762 4 55667888889999999888875
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEcC
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
. ..++.. ..+++++. |++++
T Consensus 200 ~--~pvl~~--~~l~~g~~-i~~ig 219 (314)
T PRK06141 200 T--EPLVRG--EWLKPGTH-LDLVG 219 (314)
T ss_pred C--CCEecH--HHcCCCCE-EEeeC
Confidence 5 333322 34678874 44433
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.6e-08 Score=83.05 Aligned_cols=96 Identities=22% Similarity=0.299 Sum_probs=70.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceee--cCchhhhccCCEEEEeeCcccH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL--SDNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~--~~~~~~~~~aDivil~v~~~~~ 84 (272)
...++|+|||+|.||..+++.|...|. .+|+++ +|++++.+.+.+ .|..+. ++..+.+.++|+||.|++....
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~---~~V~v~-~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~ 251 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV---AEITIA-NRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY 251 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch
Confidence 356899999999999999999988653 289999 999998877766 565432 3345667899999999987665
Q ss_pred HHHHHHhchhc-CCCCEEEEEcCC
Q 024121 85 KDVAMQIRPLL-SRKKLLVSVAAG 107 (272)
Q Consensus 85 ~~v~~~l~~~l-~~~~~iis~~~~ 107 (272)
.+++..+.... .++.++++++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 252 AKIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred HHHHHHHHhhCCCCCeEEEEeCCC
Confidence 55454433222 256788888644
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-07 Score=74.83 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=67.6
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhc-cCCEEEEeeCcc
Q 024121 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVE-YSDVVVFSVKPQ 82 (272)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~-~aDivil~v~~~ 82 (272)
+..+..++|+|+|+|+||+.+++.|.+.|+ +|+++ |+++++.+.+.+ .+....++ .++.. ++|+++.|....
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~----~Vvv~-D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~ 96 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGA----KLIVA-DINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGG 96 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEeccccc
Confidence 345567899999999999999999999999 99999 999988888776 37665543 44444 899999776544
Q ss_pred cH-HHHHHHhchhcCCCCEEEEEcCC
Q 024121 83 VV-KDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 83 ~~-~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
.+ .+.++++ ..++|+.-.++
T Consensus 97 ~I~~~~~~~l-----~~~~v~~~AN~ 117 (200)
T cd01075 97 VINDDTIPQL-----KAKAIAGAANN 117 (200)
T ss_pred ccCHHHHHHc-----CCCEEEECCcC
Confidence 32 3444443 24577765554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3e-08 Score=84.26 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=61.3
Q ss_pred CCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....++|+|||.| .||.+|+..|.++|+ .|++| ++... ++.+++++||+||+|++ +..+
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga----tVtv~-~~~t~--------------~l~e~~~~ADIVIsavg~~~~v 216 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHC----SVTVV-HSRST--------------DAKALCRQADIVVAAVGRPRLI 216 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEE-CCCCC--------------CHHHHHhcCCEEEEecCChhcc
Confidence 4567899999996 999999999999999 99999 87642 56788899999999995 4455
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
.+.+ +++|.+||++.
T Consensus 217 ~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 217 DADW------LKPGAVVIDVG 231 (301)
T ss_pred cHhh------ccCCcEEEEec
Confidence 5544 67999999873
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.9e-08 Score=84.35 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=75.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH------------HHcCceeecCchhhhccCCE
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF------------ESIGVKVLSDNNAVVEYSDV 74 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l------------~~~g~~~~~~~~~~~~~aDi 74 (272)
....++|||||+|+||+.+|+.+..-|. +|.+| +|+..+.... ..... ...+..+++.+||+
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~----~V~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDi 229 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGV----KLLAT-RRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADI 229 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCC----EEEEE-CCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCE
Confidence 3556899999999999999999999998 99999 9874221110 00111 23577899999999
Q ss_pred EEEeeCcc-cHHHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 75 VVFSVKPQ-VVKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 75 vil~v~~~-~~~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
|++++|.. ..+.++ .+....++++.++|++.-| +..+.|.+.+.
T Consensus 230 Vvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 230 VVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALE 277 (347)
T ss_pred EEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 99999843 344454 3445567899999988654 34456666665
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=80.99 Aligned_cols=91 Identities=12% Similarity=0.233 Sum_probs=71.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee--cCchhhhccCCEEEEeeCcccHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~aDivil~v~~~~~~ 85 (272)
...+|++|||+|.+|..++..|...|. +|+++ +|++++.+.....|.... .+..+.+.++|+||.|+|+..+.
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga----~V~v~-~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~ 224 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA----NVTVG-ARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLT 224 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhh
Confidence 356899999999999999999999998 99999 999887776666776643 24567788999999999865332
Q ss_pred HHHHHhchhcCCCCEEEEEcC
Q 024121 86 DVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~ 106 (272)
++....++++.+||++..
T Consensus 225 ---~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 225 ---KEVLSKMPPEALIIDLAS 242 (296)
T ss_pred ---HHHHHcCCCCcEEEEEcc
Confidence 233345678899998754
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-07 Score=82.34 Aligned_cols=106 Identities=14% Similarity=0.197 Sum_probs=78.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~~ 85 (272)
....+++||||+|++|+.++..+..-|. +|.+| |+...+. .....+.....+.++++++||+|.+.+|- +..+
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm----~v~~~-d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~ 212 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGM----KVIGY-DPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETR 212 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-CCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchh
Confidence 3447899999999999999999999999 99999 9833221 11224555567899999999999999984 4566
Q ss_pred HHHH-HhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.++. +....++++.++|+++=|- ..+.|-+.+.
T Consensus 213 g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~ 248 (324)
T COG0111 213 GLINAEELAKMKPGAILINAARGGVVDEDALLAALD 248 (324)
T ss_pred cccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHH
Confidence 6663 3445578999999887553 4456666665
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.3e-08 Score=86.03 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=74.2
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc---
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ--- 82 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~--- 82 (272)
.....++|||||+|+||+.+++.+..-|+ +|.+| |+..... .+.....+.++++++||+|++++|-.
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~----~V~~~-Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g 181 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGW----KVLVC-DPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEG 181 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCc
Confidence 34567899999999999999999999999 99999 8754321 12222357889999999999999853
Q ss_pred --cHHHHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 83 --VVKDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 83 --~~~~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
....++ .+....++++.++|+++-|- ..+.+.+.+.
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~ 222 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALL 222 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 233344 23455678999999887553 3455555553
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=76.28 Aligned_cols=153 Identities=14% Similarity=0.091 Sum_probs=108.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH-----------HHHHcC--------------ceeec
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-----------AFESIG--------------VKVLS 63 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~-----------~l~~~g--------------~~~~~ 63 (272)
+.-||+|+|.|.+|+++|.-+...|| +|..| |..++.++ +|.+.| +..+.
T Consensus 2 s~~ki~ivgSgl~g~~WAmlFAs~Gy----qVqlY-DI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~ 76 (313)
T KOG2305|consen 2 SFGKIAIVGSGLVGSSWAMLFASSGY----QVQLY-DILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTT 76 (313)
T ss_pred CccceeEeecccccchHHHHHhccCc----eEEEe-eccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCc
Confidence 35689999999999999999999999 99999 99876542 222222 23456
Q ss_pred CchhhhccCCEEEEeeCcc-cH-HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEE
Q 024121 64 DNNAVVEYSDVVVFSVKPQ-VV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~-~~-~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~ 140 (272)
+..|+++.+=.|--|+|-+ .+ ++++.++-..+.+.+++-|.++.+....+..-+. ..++.-.||..|...-. .+-+
T Consensus 77 ~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiP-LvEl 155 (313)
T KOG2305|consen 77 SLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIP-LVEL 155 (313)
T ss_pred cHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccc-hhee
Confidence 7889999999999999865 33 4566666666666655556556666655544333 35677778866554322 2335
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCC-eEEc
Q 024121 141 SLGGTATEEDGELIGKLFGSVGK-IWRA 167 (272)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~G~-~~~~ 167 (272)
.+.+-++++.+++-+.+.+.+|. .+..
T Consensus 156 VPaPwTsp~tVdrt~~lM~sigq~pV~l 183 (313)
T KOG2305|consen 156 VPAPWTSPDTVDRTRALMRSIGQEPVTL 183 (313)
T ss_pred ccCCCCChhHHHHHHHHHHHhCCCCccc
Confidence 56677789999999999999994 4433
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-07 Score=75.40 Aligned_cols=95 Identities=18% Similarity=0.354 Sum_probs=71.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~ 89 (272)
++||+||||.+|..+...+.. |-.+-.-+.+| ||+.+++..+.+ .+.....+.+|.+.+.|+++-|-.++++++...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~-~~~~~e~v~v~-D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~ 78 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRD-GRVDFELVAVY-DRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEAVREYVP 78 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhc-CCcceeEEEEe-cCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHHHHHHhH
Confidence 589999999999988876554 42222356778 999999988877 455455788888899999999999999999888
Q ss_pred HhchhcCCCCEEEEEcCCCC
Q 024121 90 QIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 90 ~l~~~l~~~~~iis~~~~~~ 109 (272)
+++.. ..+-+|+|+ +.+.
T Consensus 79 ~~L~~-g~d~iV~SV-GALa 96 (255)
T COG1712 79 KILKA-GIDVIVMSV-GALA 96 (255)
T ss_pred HHHhc-CCCEEEEec-hhcc
Confidence 76543 245566665 4444
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.6e-07 Score=80.28 Aligned_cols=105 Identities=14% Similarity=0.192 Sum_probs=76.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
....+++||||+|++|..+++.+. .-|. +|..| +|.... +.....++.. .+.++++++||+|++++|-. ..
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm----~V~~~-~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T 214 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNM----PILYN-ARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDET 214 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCC----EEEEE-CCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHH
Confidence 456689999999999999999987 5676 88888 876422 2222345554 47899999999999999843 45
Q ss_pred HHHHH-HhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 85 KDVAM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~~-~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
+.++. +....++++.++|++.-| +..+.|.+.+.
T Consensus 215 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 215 HHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ 251 (323)
T ss_pred hhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 55552 345567899999988644 34456666665
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=70.81 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=62.3
Q ss_pred eEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcC--ce-e---ecCchhh-hccCCEEEEeeCcc
Q 024121 12 ILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIG--VK-V---LSDNNAV-VEYSDVVVFSVKPQ 82 (272)
Q Consensus 12 ~IgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g--~~-~---~~~~~~~-~~~aDivil~v~~~ 82 (272)
||+|||+ |.+|..++..+.+. ++ ++...+.++.++.+.+...+ +. . ..+..+. ..++|+||+|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~----~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~ 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDF----EVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHG 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCc----eEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcH
Confidence 6899995 99999999999885 55 66543255544333333321 21 1 1111121 24899999999999
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
...+++..+.+.+.+|+++||+++..
T Consensus 77 ~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 77 VSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred HHHHHHHHHHhhhcCCCEEEECCccc
Confidence 88887766666668999999987654
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.7e-07 Score=79.94 Aligned_cols=104 Identities=15% Similarity=0.263 Sum_probs=75.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~ 86 (272)
...+++||||+|++|+++|+.+..=|. +|..| +|.+. .+..+..+..... .++++++||+|.+.+|.. +...
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fgm----~v~y~-~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~h 216 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFGM----KVLYY-DRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRH 216 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCCC----EEEEE-CCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhh
Confidence 456899999999999999999986566 88888 98864 2222234455554 899999999999999854 4555
Q ss_pred HH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 87 VA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 87 v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
++ .+....++++.++|++.=|- ..+.+-+.+.
T Consensus 217 Lin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALK 251 (324)
T ss_pred hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 55 34455678999999886543 4455655554
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-07 Score=81.06 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=67.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC--ceeecCchhhhccCCEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG--VKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
+..++||||+|.+|...+..+.... +..+|++| +|++++++.+.+ .| +.++.+..++++++|+|++|+|..
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~--~~~~v~V~-~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~ 203 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVF--DLEEVSVY-CRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR 203 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CCCEEEEE-CCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC
Confidence 5678999999999999888876632 34589999 999999877655 35 456788999999999999999764
Q ss_pred cHHHHHHHhchhcCCCCEEEEEc
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
. .++. ...++||..|..+.
T Consensus 204 ~--P~~~--~~~l~~g~~v~~vG 222 (325)
T TIGR02371 204 K--PVVK--ADWVSEGTHINAIG 222 (325)
T ss_pred C--cEec--HHHcCCCCEEEecC
Confidence 3 2221 12357888776553
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.6e-07 Score=82.87 Aligned_cols=104 Identities=17% Similarity=0.245 Sum_probs=77.5
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
.....+++||||+|++|+.+|+.+..-|. +|.+| +|.+.. ...++....+.++++++||+|.+++|.. ..
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm----~V~~~-d~~~~~----~~~~~~~~~~l~ell~~sDiVslh~Plt~~T 217 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGM----RVYFY-DIEDKL----PLGNARQVGSLEELLAQSDVVSLHVPETPST 217 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCCccc----ccCCceecCCHHHHHhhCCEEEEcCCCChHH
Confidence 34567899999999999999999999998 99999 986421 1123444568899999999999999854 45
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
+.++ .+....++++.++|+++-| +..+.|.+.+.
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINASRGTVVDIDALADALK 254 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 5555 3345567899999988644 34456666554
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-07 Score=83.01 Aligned_cols=103 Identities=14% Similarity=0.206 Sum_probs=73.6
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc--
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-- 83 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-- 83 (272)
+....++|||||+|+||+.+++.+..-|. +|.+| |+..... .... ...+.++++++||+|++.+|-..
T Consensus 112 ~~L~gktvGIIG~G~IG~~vA~~l~a~G~----~V~~~-dp~~~~~----~~~~-~~~~L~ell~~sDiI~lh~PLt~~g 181 (378)
T PRK15438 112 FSLHDRTVGIVGVGNVGRRLQARLEALGI----KTLLC-DPPRADR----GDEG-DFRSLDELVQEADILTFHTPLFKDG 181 (378)
T ss_pred CCcCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCccccc----cccc-ccCCHHHHHhhCCEEEEeCCCCCCc
Confidence 45577899999999999999999999999 99999 8753211 1111 23578899999999999987322
Q ss_pred ---HHHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 84 ---VKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 84 ---~~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
...++ .+....++++.++|+++-| +..+.|.+.+.
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 182 PYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLN 222 (378)
T ss_pred ccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHH
Confidence 33333 3444567899999988655 34455655553
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.3e-07 Score=78.09 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=78.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v 87 (272)
..+||||+|+|++|+.+|++|..-|. .+..+ +|++...+...+.+.. ..|..+.+.++|+|++|+|.. +...+
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg~----~i~y~-~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~l 234 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFGC----VILYH-SRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHL 234 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhccc----eeeee-cccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHH
Confidence 45899999999999999999998664 66666 8877666665555554 357789999999999999864 56666
Q ss_pred HH-HhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 88 AM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 88 ~~-~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
+. +....++++.++|++.=| +..+.+.+.+.
T Consensus 235 iNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~ 268 (336)
T KOG0069|consen 235 INKKFIEKMKDGAVLVNTARGAIIDEEALVEALK 268 (336)
T ss_pred hhHHHHHhcCCCeEEEeccccccccHHHHHHHHh
Confidence 64 566778899999987644 34456666665
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.2e-07 Score=78.69 Aligned_cols=102 Identities=20% Similarity=0.257 Sum_probs=75.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....+++||||+|++|+.+|+.+..-|. +|..| +|..... ..++. ..+.++++++||+|++++|-. ..+
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm----~V~~~-d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~ 211 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGA----KVVYY-STSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTK 211 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCC----EEEEE-CCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhh
Confidence 4567899999999999999999988887 99999 9864221 12343 347899999999999999843 444
Q ss_pred HHHH-HhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
.++. +....++++.++|+++-| +..+.|.+.+.
T Consensus 212 ~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~ 247 (311)
T PRK08410 212 NLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALD 247 (311)
T ss_pred cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 4552 344557899999988755 34556666665
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.6e-07 Score=75.36 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=63.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcE-EEEeCCCHHHHHHHHHcCceeecCchhh-hccCCEEEEeeCcccHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAV-VEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V-~v~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~aDivil~v~~~~~~~v 87 (272)
.+||||||||.||+.++..|.+.+. ...++ .++ +|++++.+.+... +.++.+.+++ ..+.|+|+-|-.++.+++.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~-~~~~l~~V~-~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~~av~e~ 78 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAA-QPCQLAALT-RNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQQAIAEH 78 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCC-CceEEEEEe-cCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCHHHHHHH
Confidence 5799999999999999999876432 11244 456 8988888777654 6677888885 6789999999999999988
Q ss_pred HHHhch
Q 024121 88 AMQIRP 93 (272)
Q Consensus 88 ~~~l~~ 93 (272)
...++.
T Consensus 79 ~~~iL~ 84 (267)
T PRK13301 79 AEGCLT 84 (267)
T ss_pred HHHHHh
Confidence 887654
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-07 Score=78.47 Aligned_cols=72 Identities=19% Similarity=0.235 Sum_probs=59.1
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeC-CCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-cc
Q 024121 7 PAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVH-SNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QV 83 (272)
Q Consensus 7 ~~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~-r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~ 83 (272)
....++|+||| .|.||.+|+..|.+.|+ .|++| + |++ ++.+++++||+||+|++. ..
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~----tVtv~-~~rT~---------------~l~e~~~~ADIVIsavg~~~~ 214 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA----TVTIA-HSRTR---------------DLPAVCRRADILVAAVGRPEM 214 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCC----EEEEE-CCCCC---------------CHHHHHhcCCEEEEecCChhh
Confidence 45678999999 99999999999999999 99999 6 553 346778899999999964 44
Q ss_pred HHHHHHHhchhcCCCCEEEEE
Q 024121 84 VKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~ 104 (272)
+.+.+ +++|++||++
T Consensus 215 v~~~~------lk~GavVIDv 229 (296)
T PRK14188 215 VKGDW------IKPGATVIDV 229 (296)
T ss_pred cchhe------ecCCCEEEEc
Confidence 44443 6799999986
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.5e-07 Score=70.16 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=57.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c---Ccee--ecCchhhhccCCEEEEeeCc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I---GVKV--LSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~---g~~~--~~~~~~~~~~aDivil~v~~ 81 (272)
.+.+++.|||+|-+|++++..|.+.|. .+|+++ +|+.++++.+.+ . ++.. .++..+.+.++|+||.|+|.
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~---~~i~i~-nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGA---KEITIV-NRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPS 85 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTS---SEEEEE-ESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SST
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCC---CEEEEE-ECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCC
Confidence 467899999999999999999999997 259999 999999998877 3 2332 34445567899999999975
Q ss_pred c
Q 024121 82 Q 82 (272)
Q Consensus 82 ~ 82 (272)
.
T Consensus 86 ~ 86 (135)
T PF01488_consen 86 G 86 (135)
T ss_dssp T
T ss_pred C
Confidence 5
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.4e-07 Score=68.36 Aligned_cols=97 Identities=25% Similarity=0.369 Sum_probs=66.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHH-H----HHHHH---HcCceeecCchhhhccCCEEEEeeC
Q 024121 11 FILGFIGA-GKMAESIAKGVAK-SGVLPPDRICTAVHSNLK-R----RDAFE---SIGVKVLSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~-~----~~~l~---~~g~~~~~~~~~~~~~aDivil~v~ 80 (272)
|||+|+|+ |+||+.+++.+.+ .++ ++....+|+++ . .-.+. ..|+.+.++.+++++.+|+||-.+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~----~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~ 76 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGF----ELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTN 76 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTE----EEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCc----EEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCC
Confidence 68999999 9999999999998 566 65533377762 1 11222 2467778889999999999999998
Q ss_pred cccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHH
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQ 114 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~ 114 (272)
|+.+.+.++.... .+..+|..++|.+.++++
T Consensus 77 p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~ 107 (124)
T PF01113_consen 77 PDAVYDNLEYALK---HGVPLVIGTTGFSDEQID 107 (124)
T ss_dssp HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHHH
T ss_pred hHHhHHHHHHHHh---CCCCEEEECCCCCHHHHH
Confidence 8877777766543 356677777888765544
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.8e-07 Score=77.46 Aligned_cols=101 Identities=14% Similarity=0.217 Sum_probs=73.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....+++||||+|++|+.+++.+..-|. +|..| +|.... . .... ..+.++++++||+|++++|-. ..+
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~----~V~~~-~~~~~~--~---~~~~-~~~l~ell~~sDiv~l~~Plt~~T~ 212 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGM----KVLYA-EHKGAS--V---CREG-YTPFEEVLKQADIVTLHCPLTETTQ 212 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCC----EEEEE-CCCccc--c---cccc-cCCHHHHHHhCCEEEEcCCCChHHh
Confidence 3456899999999999999999988888 89988 876421 1 0111 247889999999999999843 455
Q ss_pred HHHH-HhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
.++. +....++++.++|++.-| +..+.|.+.+.
T Consensus 213 ~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 213 NLINAETLALMKPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 5552 344557899999988654 34566666665
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-06 Score=76.70 Aligned_cols=107 Identities=18% Similarity=0.220 Sum_probs=74.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHH-HHHH-HHcC------------ceeecCchhhhcc
Q 024121 7 PAESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKR-RDAF-ESIG------------VKVLSDNNAVVEY 71 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~-~~~l-~~~g------------~~~~~~~~~~~~~ 71 (272)
....++|||||+|++|+.+|+.+. .-|. +|.+| +|.... .... ...+ .....+.++++++
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm----~V~~~-d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~ 236 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE 236 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCC----EEEEE-CCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh
Confidence 456689999999999999999985 5577 89999 987532 1111 1111 1223478999999
Q ss_pred CCEEEEeeCcc-cHHHHHH-HhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 72 SDVVVFSVKPQ-VVKDVAM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 72 aDivil~v~~~-~~~~v~~-~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
||+|++++|-. ..+.++. +....++++.++|++.-| +..+.+.+.+.
T Consensus 237 sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 237 ADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLK 287 (386)
T ss_pred CCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 99999999843 4555553 345567899999988654 34456656554
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.6e-07 Score=75.02 Aligned_cols=98 Identities=19% Similarity=0.237 Sum_probs=69.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
+|||+|||+ |.||+.++..+.+. ++ ++. ++ ++++++.......++....+..++++++|+|+.+++|+...+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~----elvav~-d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~~~~ 75 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDL----ELVAAV-DRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEATLE 75 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEE-ecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHHHHH
Confidence 379999998 99999999888764 44 655 46 888766544433566666788887888999999999888777
Q ss_pred HHHHhchhcCCCCEEEEEcCCCCHHHHHH
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~~~~l~~ 115 (272)
++.... ..++-++.-+.|.+.++..+
T Consensus 76 ~~~~al---~~G~~vvigttG~s~~~~~~ 101 (257)
T PRK00048 76 NLEFAL---EHGKPLVIGTTGFTEEQLAE 101 (257)
T ss_pred HHHHHH---HcCCCEEEECCCCCHHHHHH
Confidence 665544 34444554456777665543
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-06 Score=76.00 Aligned_cols=100 Identities=16% Similarity=0.208 Sum_probs=73.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|++|+.+|+.+..-|. +|..| +|.... .... ..+.++++++||+|++++|-. ..+
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm----~V~~~-~~~~~~------~~~~-~~~l~ell~~sDiv~l~lPlt~~T~ 212 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGM----RVLIG-QLPGRP------ARPD-RLPLDELLPQVDALTLHCPLTEHTR 212 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCC----EEEEE-CCCCCc------cccc-ccCHHHHHHhCCEEEECCCCChHHh
Confidence 4566899999999999999999988888 99999 886321 1111 236889999999999999853 455
Q ss_pred HHHH-HhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
.++. +....++++.++|++.-| +..+.|.+.+.
T Consensus 213 ~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 213 HLIGARELALMKPGALLINTARGGLVDEQALADALR 248 (317)
T ss_pred cCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 5552 344567899999988644 34456666665
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.1e-06 Score=65.29 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=61.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-H-
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V- 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~- 84 (272)
+...+++.++|.|..|+.+|+.|...|. +|+++ +++|-++-+..-.|.++. +.++++..+|++|.++-... +
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga----~V~V~-e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~ 93 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGA----RVTVT-EIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVIT 93 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-----EEEEE--SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCC----EEEEE-ECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccC
Confidence 3456789999999999999999999998 99999 999977666555888875 67889999999999985544 2
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.+-+.+ ++++.++.+.
T Consensus 94 ~e~~~~----mkdgail~n~ 109 (162)
T PF00670_consen 94 GEHFRQ----MKDGAILANA 109 (162)
T ss_dssp HHHHHH----S-TTEEEEES
T ss_pred HHHHHH----hcCCeEEecc
Confidence 355544 5577666654
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.3e-06 Score=73.93 Aligned_cols=87 Identities=24% Similarity=0.235 Sum_probs=66.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHH----cCcee-ecCchhhhccCCEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFES----IGVKV-LSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~----~g~~~-~~~~~~~~~~aDivil~v~~~ 82 (272)
+.++++|||+|.+|...+..+.. .+. .+|.+| +|++++++.+.+ .++.+ ..+.++++.++|+|+.|+|..
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~---~~v~v~-~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPV---RRVWVR-GRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR 199 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCC---CEEEEE-cCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC
Confidence 56789999999999999999975 333 489999 999999887766 23333 356778899999999999866
Q ss_pred cHHHHHHHhchhcCCCCEEEEE
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~ 104 (272)
. .++.. .++||+.|..+
T Consensus 200 ~--Pl~~~---~~~~g~hi~~i 216 (304)
T PRK07340 200 T--PVYPE---AARAGRLVVAV 216 (304)
T ss_pred C--ceeCc---cCCCCCEEEec
Confidence 4 23332 35788777655
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.5e-06 Score=73.83 Aligned_cols=95 Identities=18% Similarity=0.283 Sum_probs=64.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------cC--ceeecCchhhhccCCEEEEeeC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG--VKVLSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~g--~~~~~~~~~~~~~aDivil~v~ 80 (272)
+||+|||+|.+|++++..|...|. ..+|.++ ||++++++.+.. .+ ..+.....+.+.+||+||+++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~--~~ei~l~-D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag 77 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGI--ADELVLI-DINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAG 77 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC--CCEEEEE-eCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccC
Confidence 489999999999999999999884 1289999 999887665443 11 2233333455889999999983
Q ss_pred cc----c------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 81 PQ----V------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 81 ~~----~------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
.. . ++++.+.+..+ .|+.+++..+++..
T Consensus 78 ~~~~~g~~R~dll~~N~~i~~~~~~~i~~~-~~~~~vivvsNP~d 121 (306)
T cd05291 78 APQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVASNPVD 121 (306)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecChHH
Confidence 21 1 33444555554 46667776666544
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.3e-06 Score=72.90 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=64.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH----HH------cC--ceeecCchhhhccCCEEEEe
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF----ES------IG--VKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l----~~------~g--~~~~~~~~~~~~~aDivil~ 78 (272)
|||+|||+|.||..+|..+...|+. +|.++ |++++..+.. .. .. +..+.+.++ +++||+||++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~---~Vvlv-Di~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIit 76 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELA---DLVLL-DVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVIT 76 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCC---eEEEE-eCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEc
Confidence 6899999999999999999998862 69999 8866543311 11 11 223455555 7899999999
Q ss_pred eC--c--------------ccHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 79 VK--P--------------QVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 79 v~--~--------------~~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
+. . +.++++.+++.++. ++.++|..+++...
T Consensus 77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di 123 (305)
T TIGR01763 77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDA 123 (305)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHH
Confidence 85 1 12344556666664 66677777776554
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.4e-06 Score=73.00 Aligned_cols=89 Identities=10% Similarity=0.135 Sum_probs=68.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cCc--eeecCchhhhccCCEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGV--KVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g~--~~~~~~~~~~~~aDivil~v~~~ 82 (272)
+..+++|||+|..+...+..+... . +..+|.+| +|++++++.+.+ .++ .++++.++++.+||+|+.|++..
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v-~-~i~~v~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~ 203 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV-T-DCRQLWVW-GRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR 203 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc-C-CCCEEEEE-CCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC
Confidence 567899999999999999988774 2 55699999 999999887765 243 44678889999999999999755
Q ss_pred cHHHHHHHhchhcCCCCEEEEE
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~ 104 (272)
. .+++. ..++||+.|..+
T Consensus 204 ~--P~~~~--~~l~~G~hi~~i 221 (315)
T PRK06823 204 E--PLLQA--EDIQPGTHITAV 221 (315)
T ss_pred C--ceeCH--HHcCCCcEEEec
Confidence 3 33321 235788877755
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.2e-06 Score=73.21 Aligned_cols=95 Identities=21% Similarity=0.234 Sum_probs=64.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H----c--Ccee--ecCchhhhccCCEEEE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----I--GVKV--LSDNNAVVEYSDVVVF 77 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~----~--g~~~--~~~~~~~~~~aDivil 77 (272)
+|||+|||+|.||..++..+...|+ . +|.++ |+++++++... . . ...+ ..+. +.+++||+||+
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~--~-ev~L~-D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii 76 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKEL--G-DVVLF-DIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVI 76 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--e-EEEEE-ECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEE
Confidence 4799999999999999999998875 1 79999 99876653321 1 1 1233 2344 55899999999
Q ss_pred ee--Cc--------------ccHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 78 SV--KP--------------QVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 78 ~v--~~--------------~~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
++ |. ..+.+++.++.++. ++.++|..+++...
T Consensus 77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d~ 124 (307)
T PRK06223 77 TAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVDA 124 (307)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHH
Confidence 96 22 12455666676665 56666666665543
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.1e-06 Score=63.45 Aligned_cols=95 Identities=22% Similarity=0.380 Sum_probs=64.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------c--CceeecCchhhhccCCEEEEee
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------I--GVKVLSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~--g~~~~~~~~~~~~~aDivil~v 79 (272)
|||+|||+ |++|++++..|...+. .+++.++ |+++++++.... . ...+..+..+.+++||+|+++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l--~~ei~L~-D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL--ADEIVLI-DINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITA 77 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT--SSEEEEE-ESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC--CCceEEe-ccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEec
Confidence 79999999 9999999999999876 3479999 999776543322 1 2344445667789999999986
Q ss_pred --C--c-ccH-----------HHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 --K--P-QVV-----------KDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 --~--~-~~~-----------~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
| + ..- +++..++..+ .|+.+++-.++++.
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~vivvtNPvd 122 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIVVTNPVD 122 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE-SSSHH
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEEeCCcHH
Confidence 2 1 111 2233445555 47777776666543
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-06 Score=74.62 Aligned_cols=86 Identities=13% Similarity=0.218 Sum_probs=57.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCH-HHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNL-KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
+.+||+|||+|+||...+..+.+. ++ ++. +| +|++ ++.. ...++....+..+...+.|+|++|+|+....
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~pd~----ELVgV~-dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~ 74 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQPDM----ELVGVF-SRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDI 74 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhCCCc----EEEEEE-cCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCH
Confidence 458999999999999999998865 44 665 56 8885 4332 1234433445566678899999999865433
Q ss_pred HHHHHhchhcCCCCEEEEE
Q 024121 86 DVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~ 104 (272)
+.. .+.+..+.-+|+.
T Consensus 75 ~~~---~~~L~aG~NVV~s 90 (324)
T TIGR01921 75 PEQ---APYFAQFANTVDS 90 (324)
T ss_pred HHH---HHHHHcCCCEEEC
Confidence 222 2234455666654
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-06 Score=75.21 Aligned_cols=94 Identities=26% Similarity=0.423 Sum_probs=68.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee--ecCchhhhccCCEEEEee--Cccc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSV--KPQV 83 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDivil~v--~~~~ 83 (272)
..+++.|||+|.||.-.+++|..+|. .+|++. ||+.+++..+++ .|..+ .++..+.+.++|+||.|+ |...
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~---~~i~Ia-NRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~i 252 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV---KKITIA-NRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPI 252 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC---CEEEEE-cCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccc
Confidence 45789999999999999999999996 389999 999999999887 66443 345567788999999998 3333
Q ss_pred HH-HHHHHhchhcCCCCEEEEEcCC
Q 024121 84 VK-DVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 84 ~~-~v~~~l~~~l~~~~~iis~~~~ 107 (272)
+. +-++..... ++..++||+..+
T Consensus 253 i~~~~ve~a~~~-r~~~livDiavP 276 (414)
T COG0373 253 ITREMVERALKI-RKRLLIVDIAVP 276 (414)
T ss_pred cCHHHHHHHHhc-ccCeEEEEecCC
Confidence 32 333332211 223467787443
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.4e-06 Score=72.64 Aligned_cols=89 Identities=19% Similarity=0.274 Sum_probs=68.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC--ceeecCchhhhccCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG--VKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g--~~~~~~~~~~~~~aDivil~v~~ 81 (272)
+..+++|||+|..|...+..+..- + +..+|.+| +|++++++.+.+ .| +.++.+.++++.+||+|+.|++.
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v-~-~i~~v~v~-~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s 192 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV-Y-NPKRIRVY-SRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS 192 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc-C-CCCEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC
Confidence 567899999999999999888874 2 55699999 999999887765 24 45678899999999999999986
Q ss_pred ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
.. .+++. ..++|+..|..+
T Consensus 193 ~~--P~~~~--~~l~pg~hV~ai 211 (301)
T PRK06407 193 DT--PIFNR--KYLGDEYHVNLA 211 (301)
T ss_pred CC--cEecH--HHcCCCceEEec
Confidence 53 23321 235787665544
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.1e-06 Score=77.83 Aligned_cols=96 Identities=24% Similarity=0.334 Sum_probs=69.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c-Cce----eecCchhhhccCCEEEEeeCc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-GVK----VLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~-g~~----~~~~~~~~~~~aDivil~v~~ 81 (272)
...++|+|||+|.||..++++|...|. .+|+++ +|+.++++.+.+ . +.. ...+..+++.++|+||.|++.
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~---~~V~V~-nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s 339 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC---TKMVVV-NRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS 339 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC---CeEEEE-eCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC
Confidence 457899999999999999999999885 269999 999999988876 3 332 123556778899999999853
Q ss_pred c---cHHHHHHHhchhc---CCCCEEEEEcCC
Q 024121 82 Q---VVKDVAMQIRPLL---SRKKLLVSVAAG 107 (272)
Q Consensus 82 ~---~~~~v~~~l~~~l---~~~~~iis~~~~ 107 (272)
. ...+.++.+.+.- ....++||++-+
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 2 3456666653211 122478887443
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.8e-06 Score=73.29 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=66.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCc--eeecCchhhhccCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV--KVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~--~~~~~~~~~~~~aDivil~v~~ 81 (272)
+..+++|||+|.+|...+..+.... ...+|.+| +|++++.+++.+ .++ ....+.++++.++|+|+.|+|.
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~--~~~~v~v~-~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s 202 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVR--DIERVRVY-SRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNA 202 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcC--CccEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCC
Confidence 5678999999999999888776431 22489999 999999887765 244 3456778889999999999986
Q ss_pred ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
.. .++. ..+++|+.|+.+
T Consensus 203 ~~--p~i~---~~l~~G~hV~~i 220 (325)
T PRK08618 203 KT--PVFS---EKLKKGVHINAV 220 (325)
T ss_pred CC--cchH---HhcCCCcEEEec
Confidence 63 3333 346789887765
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-06 Score=72.55 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=57.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
+|||||||+|+||+.+++.+.+.... ++...+.+ ..++.......++.++.+.+++..+.|+|+.|+++....+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~---~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~e~ 77 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDL---RVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALKEH 77 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCc---eEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHHHH
Confidence 47999999999999999998875321 44332144 33332222223666777777764569999999998877666
Q ss_pred HHHhchhcCCCCEEEEE
Q 024121 88 AMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~ 104 (272)
..+.. ..|+-++..
T Consensus 78 ~~~aL---~aGk~Vvi~ 91 (265)
T PRK13303 78 VVPIL---KAGIDCAVI 91 (265)
T ss_pred HHHHH---HcCCCEEEe
Confidence 65544 344445543
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-06 Score=65.42 Aligned_cols=90 Identities=11% Similarity=0.165 Sum_probs=60.7
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCCCCCc-EEEEeCCCHHHHHHHHH-----c---CceeecCchhhhccCCEEEEeeCc
Q 024121 12 ILGFIG-AGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFES-----I---GVKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 12 ~IgiIG-~G~mG~~la~~l~~~g~~~~~~-V~v~~~r~~~~~~~l~~-----~---g~~~~~~~~~~~~~aDivil~v~~ 81 (272)
||+||| +|.+|+.+.+.|.++-. .+ +.++ .++.+.-+.+.. . ...+.....+.+.++|+||+|+|.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~---~e~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPD---FELVALV-SSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST---EEEEEEE-ESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC---ccEEEee-eeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCch
Confidence 799999 89999999999988432 24 4455 555522122222 1 223333334556899999999999
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
....+..+.+. .++..|||.++..
T Consensus 77 ~~~~~~~~~~~---~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 GASKELAPKLL---KAGIKVIDLSGDF 100 (121)
T ss_dssp HHHHHHHHHHH---HTTSEEEESSSTT
T ss_pred hHHHHHHHHHh---hCCcEEEeCCHHH
Confidence 98888887763 5777999987654
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=2e-06 Score=77.74 Aligned_cols=96 Identities=27% Similarity=0.353 Sum_probs=66.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee--ecCchhhhccCCEEEEeeCccc-
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKPQV- 83 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDivil~v~~~~- 83 (272)
...++|+|||+|.||..++..|...|. .+|+++ +|+++++..+.+ .|..+ ..+..+.+.++|+||.|++...
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~---~~V~v~-~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~ 255 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGV---RKITVA-NRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHP 255 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCC---CeEEEE-eCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCc
Confidence 456899999999999999999998885 379999 999998877766 45332 2345566789999999996432
Q ss_pred -H-HHHHHHhch-hcCCCCEEEEEcCC
Q 024121 84 -V-KDVAMQIRP-LLSRKKLLVSVAAG 107 (272)
Q Consensus 84 -~-~~v~~~l~~-~l~~~~~iis~~~~ 107 (272)
+ .+.+..... .-..+.+++|+..+
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAVP 282 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCCC
Confidence 2 333433211 11234578887543
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.9e-06 Score=67.76 Aligned_cols=91 Identities=16% Similarity=0.303 Sum_probs=67.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--cCcee---ecCch----hh-hccCCEEEEeeC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKV---LSDNN----AV-VEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--~g~~~---~~~~~----~~-~~~aDivil~v~ 80 (272)
|+|.|||+|.+|..+|+.|.+.|| +|.+. +++++++++..+ .+..+ ..+.. ++ +.++|+++.++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~----~Vv~I-d~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH----NVVLI-DRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC----ceEEE-EcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 789999999999999999999999 99999 999999888444 44332 12222 22 568999999999
Q ss_pred cccHHHHHHHhchh-cCCCCEEEEEcC
Q 024121 81 PQVVKDVAMQIRPL-LSRKKLLVSVAA 106 (272)
Q Consensus 81 ~~~~~~v~~~l~~~-l~~~~~iis~~~ 106 (272)
.+....++-.+... +....+|.-..+
T Consensus 76 ~d~~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 76 NDEVNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 88888887665533 444445554433
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.6e-06 Score=72.24 Aligned_cols=88 Identities=14% Similarity=0.237 Sum_probs=65.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHH-----cCce--eecCchhhhccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFES-----IGVK--VLSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~~--~~~~~~~~~~~aDivil~v~ 80 (272)
+..+++|||+|.+|...+..|.. .+. .+|++| +|++++++.+.+ .|+. ..++.++++.++|+|+.|+|
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i---~~v~V~-~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~ 203 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDI---RSARIW-ARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTP 203 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCc---cEEEEE-CCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecC
Confidence 45789999999999999999974 343 489999 999999888765 2543 35677888999999999998
Q ss_pred cccHHHHHHHhchhcCCCCEEEEE
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
... .++.. ..+++++.+..+
T Consensus 204 s~~--p~i~~--~~l~~g~~i~~v 223 (326)
T TIGR02992 204 SET--PILHA--EWLEPGQHVTAM 223 (326)
T ss_pred CCC--cEecH--HHcCCCcEEEee
Confidence 653 22221 235688776654
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.2e-06 Score=75.40 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=70.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
....++++|||+|.+|..++..+...|. +|.++ ++++.+.......|+... +.+++++.+|+|++++....
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga----~ViV~-e~dp~~a~~A~~~G~~~~-~leell~~ADIVI~atGt~~--- 321 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA----RVVVT-EIDPICALQAAMEGYQVV-TLEDVVETADIFVTATGNKD--- 321 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchhHHHHHhcCceec-cHHHHHhcCCEEEECCCccc---
Confidence 4567899999999999999999999998 99999 999877654444677653 57788999999999974322
Q ss_pred HHH-HhchhcCCCCEEEEEcCC
Q 024121 87 VAM-QIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 87 v~~-~l~~~l~~~~~iis~~~~ 107 (272)
++. +....++++.+++++.-+
T Consensus 322 iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 322 IITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred ccCHHHHhccCCCcEEEEcCCC
Confidence 221 233446788899987444
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.6e-06 Score=72.78 Aligned_cols=89 Identities=17% Similarity=0.280 Sum_probs=65.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC--ceeecCchhhhccCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG--VKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g--~~~~~~~~~~~~~aDivil~v~~ 81 (272)
+..+++|||+|.+|...+..+.... +...|.+| +|++++.+++.+ .+ +....+.+++++ +|+|++|+|.
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~--~i~~v~v~-~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps 203 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVF--DLEEVRVY-DRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPS 203 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhC--CceEEEEE-CCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCC
Confidence 4578999999999999999987542 33588999 999998887765 24 345667788786 9999999987
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEc
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
.. .++.. ..+++++.|.++.
T Consensus 204 ~~--P~~~~--~~l~~g~hV~~iG 223 (326)
T PRK06046 204 RK--PVVKA--EWIKEGTHINAIG 223 (326)
T ss_pred CC--cEecH--HHcCCCCEEEecC
Confidence 53 23321 2357888776653
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.3e-06 Score=73.15 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=67.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC--ceeecCchhhhccCCEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG--VKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
+..+++|||+|..+....+.+..-- +..+|++| +|++++++.+.+ .+ +.++.+.++++++||+|+.|++..
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr--~i~~V~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~ 204 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL--GIEEIRLY-DIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK 204 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC--CceEEEEE-eCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC
Confidence 5678999999999999888777642 45699999 999999887765 24 455788999999999999999754
Q ss_pred cHHHHHHHhchhcCCCCEEEEE
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~ 104 (272)
.-..+++. ..++||+.|..+
T Consensus 205 ~~~Pvl~~--~~lkpG~hV~aI 224 (346)
T PRK07589 205 TNATILTD--DMVEPGMHINAV 224 (346)
T ss_pred CCCceecH--HHcCCCcEEEec
Confidence 32233322 235788766544
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.7e-06 Score=74.95 Aligned_cols=92 Identities=21% Similarity=0.260 Sum_probs=58.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---c-C--ceeecCchhhhccCCEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I-G--VKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~-g--~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
+..+++|||+|..|..-+..+...- +..+|.+| +|++++++++.+ . + +..+.+.++++++||+|+.|++..
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~--~i~~v~v~-~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~ 203 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVR--PIKEVRVY-SRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPST 203 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS----SEEEEE--SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----S
T ss_pred CCceEEEECCCHHHHHHHHHHHHhC--CceEEEEE-ccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCC
Confidence 4578999999999999999887642 34699999 999999888776 2 3 446788899999999999999765
Q ss_pred cHHHHHHHhchhcCCCCEEEEEc
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
.-..++.. ..+++++.|..+.
T Consensus 204 ~~~P~~~~--~~l~~g~hi~~iG 224 (313)
T PF02423_consen 204 TPAPVFDA--EWLKPGTHINAIG 224 (313)
T ss_dssp SEEESB-G--GGS-TT-EEEE-S
T ss_pred CCCccccH--HHcCCCcEEEEec
Confidence 52122321 2467887776653
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.5e-06 Score=73.59 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=50.4
Q ss_pred CeEEEEcccHHHHHHHH--HHH----hCCCCCCCcEEEEeCCCHHHHHHHHH--------c----CceeecCchhhhccC
Q 024121 11 FILGFIGAGKMAESIAK--GVA----KSGVLPPDRICTAVHSNLKRRDAFES--------I----GVKVLSDNNAVVEYS 72 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~--~l~----~~g~~~~~~V~v~~~r~~~~~~~l~~--------~----g~~~~~~~~~~~~~a 72 (272)
+||+|||+|.||.+++. .++ .+|+ +|.+| |+++++++.... . .+..+.|..+++++|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~----eV~L~-Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~A 75 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGS----TIALM-DIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGA 75 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCC----EEEEE-CCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCC
Confidence 58999999999998665 444 2344 99999 999987665432 1 234466777889999
Q ss_pred CEEEEeeCcc
Q 024121 73 DVVVFSVKPQ 82 (272)
Q Consensus 73 Divil~v~~~ 82 (272)
|+||.+++..
T Consensus 76 D~Vi~ai~~~ 85 (423)
T cd05297 76 DFVINTIQVG 85 (423)
T ss_pred CEEEEeeEec
Confidence 9999999853
|
linked to 3D####ucture |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.2e-06 Score=72.44 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=59.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....++|+|||. |.||.+|+..|.++|+ .|++| .... .++.+.+++||+||.|++ +..+
T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~ga----tVtv~-~s~t--------------~~l~~~~~~ADIVI~avg~~~~v 215 (284)
T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNA----TVTLT-HSRT--------------RNLAEVARKADILVVAIGRGHFV 215 (284)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCC----EEEEE-CCCC--------------CCHHHHHhhCCEEEEecCccccC
Confidence 456789999999 9999999999999999 99999 5322 256778899999999995 4555
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.+.+ +++|.++|++
T Consensus 216 ~~~~------ik~GavVIDv 229 (284)
T PRK14179 216 TKEF------VKEGAVVIDV 229 (284)
T ss_pred CHHH------ccCCcEEEEe
Confidence 5543 6799999987
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.4e-06 Score=74.28 Aligned_cols=95 Identities=23% Similarity=0.332 Sum_probs=65.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee--ecCchhhhccCCEEEEeeCccc-
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKPQV- 83 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDivil~v~~~~- 83 (272)
....+|+|||+|.||..+++.|...|. .+|+++ +|+++++..+.+ .|... ..+..+.+.++|+||.|++...
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~---~~V~v~-~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGV---GKILIA-NRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHP 253 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCc
Confidence 345799999999999999999999883 189999 999988877765 44332 2345567889999999985332
Q ss_pred -H-HHHHHHhchhcCCCCEEEEEcC
Q 024121 84 -V-KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 84 -~-~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+ .+.+......-+...+++|...
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 2 2334332211012337778753
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.9e-06 Score=70.06 Aligned_cols=93 Identities=11% Similarity=0.121 Sum_probs=65.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHH--HHHHHcCcee-ecCchhhhc-----cCCEEEE
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRR--DAFESIGVKV-LSDNNAVVE-----YSDVVVF 77 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~--~~l~~~g~~~-~~~~~~~~~-----~aDivil 77 (272)
+|+.+||||||+|++|..+...+.+... .++. ++ ++++++. +...+.|+.. ..+.+++++ +.|+||.
T Consensus 1 ~m~klrVAIIGtG~IGt~hm~~l~~~~~---velvAVv-did~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 1 MMSKLKVAIIGSGNIGTDLMIKILRSEH---LEPGAMV-GIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHhcCCC---cEEEEEE-eCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEE
Confidence 4567899999999999998888876432 2655 55 8887642 3344478765 356677764 5899999
Q ss_pred eeCcccHHHHHHHhchhcCCCCEEEEEcC
Q 024121 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 78 ~v~~~~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+++.....+....+. ..|+.+|+.++
T Consensus 77 AT~a~~H~e~a~~a~---eaGk~VID~sP 102 (302)
T PRK08300 77 ATSAGAHVRHAAKLR---EAGIRAIDLTP 102 (302)
T ss_pred CCCHHHHHHHHHHHH---HcCCeEEECCc
Confidence 999887777665554 45777886543
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.2e-06 Score=71.34 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=69.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----c-C--ceeecCchhhhccCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----I-G--VKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~-g--~~~~~~~~~~~~~aDivil~v~~ 81 (272)
+...++|||+|..+......+.+- .+..+|.+| +|++++.+++.. . + +..+.+.++++++||+|+.|+|.
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v--~~~~~I~i~-~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s 205 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAV--RDIREIRVY-SRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPS 205 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhh--CCccEEEEE-cCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCC
Confidence 456899999999999999988774 245699999 999999888774 2 3 45678889999999999999987
Q ss_pred ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
.. .++.. ..++|++.|..+
T Consensus 206 ~~--Pil~~--~~l~~G~hI~ai 224 (330)
T COG2423 206 TE--PVLKA--EWLKPGTHINAI 224 (330)
T ss_pred CC--CeecH--hhcCCCcEEEec
Confidence 76 34422 346788766654
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.1e-06 Score=71.42 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=49.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHHc-----CceeecCchhhhccCCEEEEeeC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FESI-----GVKVLSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~~-----g~~~~~~~~~~~~~aDivil~v~ 80 (272)
|||+|||+|.+|++++..|...|. ..+|.++ |+++++++. +... ...+..+..+.+++||+||+|++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~--~~ev~l~-D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGL--ASEIVLV-DINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CCEEEEE-ECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccC
Confidence 689999999999999999999883 1289999 999876653 2211 11222233456899999999985
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.5e-06 Score=74.50 Aligned_cols=99 Identities=14% Similarity=0.196 Sum_probs=73.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-H-H
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V-K 85 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~-~ 85 (272)
...++++|+|+|.+|..+++.+...|. +|.++ ++++.+.......|..+. +.+++++.+|+||.++.... + .
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga----~VIV~-e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~~ 325 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA----RVIVT-EIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIMV 325 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchHH
Confidence 456899999999999999999998898 99999 999877655555677654 56788899999999875443 2 3
Q ss_pred HHHHHhchhcCCCCEEEEEcC---CCCHHHHHHH
Q 024121 86 DVAMQIRPLLSRKKLLVSVAA---GVKLKDLQEW 116 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~---~~~~~~l~~~ 116 (272)
+.+ ..++++.+++++.- -+....|.+.
T Consensus 326 e~L----~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 326 DHM----RKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred HHH----hcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 333 34678889987643 2334555544
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.3e-06 Score=72.29 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=73.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
...++++|+|+|.+|..++..+...|. +|.++ ++++.+.......|..+. +.+++++++|+||.++.... +
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga----~ViV~-d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~---v 263 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA----RVIVT-EVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKD---V 263 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC----EEEEE-eCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHH---H
Confidence 456799999999999999999999998 99999 999987665556777654 45778899999999885433 2
Q ss_pred HH-HhchhcCCCCEEEEEcCC---CCHHHHHH
Q 024121 88 AM-QIRPLLSRKKLLVSVAAG---VKLKDLQE 115 (272)
Q Consensus 88 ~~-~l~~~l~~~~~iis~~~~---~~~~~l~~ 115 (272)
+. +....++++.++++...+ ++.+.+.+
T Consensus 264 I~~~~~~~mK~GailiN~G~~~~eId~~aL~~ 295 (406)
T TIGR00936 264 IRGEHFENMKDGAIVANIGHFDVEIDVKALEE 295 (406)
T ss_pred HHHHHHhcCCCCcEEEEECCCCceeCHHHHHH
Confidence 32 234456788888876432 34455544
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.6e-06 Score=72.92 Aligned_cols=88 Identities=14% Similarity=0.170 Sum_probs=68.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
...++++|+|+|.+|..++..+...|. +|+++ ++++.+.......|..+. +..++++.+|+||.|+.... +
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga----~ViV~-d~dp~ra~~A~~~G~~v~-~l~eal~~aDVVI~aTG~~~---v 280 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA----RVIVT-EVDPICALQAAMDGFRVM-TMEEAAELGDIFVTATGNKD---V 280 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCCchhhHHHHhcCCEec-CHHHHHhCCCEEEECCCCHH---H
Confidence 356799999999999999999999998 99999 999987766555677653 56788899999999985432 2
Q ss_pred HH-HhchhcCCCCEEEEE
Q 024121 88 AM-QIRPLLSRKKLLVSV 104 (272)
Q Consensus 88 ~~-~l~~~l~~~~~iis~ 104 (272)
+. .....++++.++++.
T Consensus 281 I~~~~~~~mK~GailiNv 298 (425)
T PRK05476 281 ITAEHMEAMKDGAILANI 298 (425)
T ss_pred HHHHHHhcCCCCCEEEEc
Confidence 32 333446788888865
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.2e-06 Score=70.53 Aligned_cols=92 Identities=12% Similarity=0.170 Sum_probs=64.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----CceeecCchh-hhccCCEEEEeeCccc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVKVLSDNNA-VVEYSDVVVFSVKPQV 83 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g~~~~~~~~~-~~~~aDivil~v~~~~ 83 (272)
..+++.|+|+|.+|.+++..|.+.|+ +|+++ +|++++.+.+.+. +.....+..+ ...++|+||.|+|...
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~----~v~v~-~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm 190 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC----NVIIA-NRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGM 190 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCC
Confidence 45789999999999999999999998 99999 9999888777652 3212222222 2357999999998642
Q ss_pred ---HHHHHHHhchhcCCCCEEEEEcC
Q 024121 84 ---VKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 84 ---~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
..++.- ....++++.++++++-
T Consensus 191 ~~~~~~~~~-~~~~l~~~~~v~D~~y 215 (270)
T TIGR00507 191 SGNIDEPPV-PAEKLKEGMVVYDMVY 215 (270)
T ss_pred CCCCCCCCC-CHHHcCCCCEEEEecc
Confidence 211100 0123578889998753
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.3e-06 Score=71.66 Aligned_cols=95 Identities=16% Similarity=0.325 Sum_probs=64.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH--H--HH----cC--cee--ecCchhhhccCCEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA--F--ES----IG--VKV--LSDNNAVVEYSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~--l--~~----~g--~~~--~~~~~~~~~~aDivi 76 (272)
+.+||+|||+|.||+.++..+...|. .++.++ |+++++++. + .. .+ ..+ ..+.+ .+++||+||
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~---~~l~L~-Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVV 78 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL---GDVVLY-DVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVV 78 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC---CeEEEE-ECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEE
Confidence 45799999999999999999988883 279999 998765431 1 11 12 222 23444 689999999
Q ss_pred Eee--Cc--------------ccHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 77 FSV--KP--------------QVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 77 l~v--~~--------------~~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
++. |. ..+.++.+.+.++ .|+.+++..+++..
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsNP~d 126 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTNPLD 126 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChHH
Confidence 998 32 2245666667666 46666666666554
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-05 Score=68.16 Aligned_cols=98 Identities=22% Similarity=0.265 Sum_probs=65.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCC-HHH----HHHHHH---cCceeecCchhhhccCCEEEEee
Q 024121 11 FILGFIG-AGKMAESIAKGVAKS-GVLPPDRIC-TAVHSN-LKR----RDAFES---IGVKVLSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~-~~~----~~~l~~---~g~~~~~~~~~~~~~aDivil~v 79 (272)
+||+|+| +|+||..+++.+.+. ++ ++. ++ +|. ++. ...+.. .|+.++.+.+++..++|+|+.++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~----elvav~-d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT 76 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGL----QLVAAF-ERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFT 76 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEE-ecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECC
Confidence 6999999 699999999999864 44 655 45 753 322 112211 35666777777655799999999
Q ss_pred CcccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHH
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW 116 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~ 116 (272)
+|....+.+.... ..++-+|..+.|.+.+..+++
T Consensus 77 ~p~~~~~~~~~al---~~g~~vVigttg~~~e~~~~l 110 (266)
T TIGR00036 77 TPEGVLNHLKFAL---EHGVRLVVGTTGFSEEDKQEL 110 (266)
T ss_pred ChHHHHHHHHHHH---HCCCCEEEECCCCCHHHHHHH
Confidence 9988777776544 344445544457877655443
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.5e-06 Score=72.15 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=68.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHHcC---ceee-------cCchhhhccCCEEEEe
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFESIG---VKVL-------SDNNAVVEYSDVVVFS 78 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~~g---~~~~-------~~~~~~~~~aDivil~ 78 (272)
+|+|-+||+|.+|+.++..|.++| + +|++- +|++++++++.... ++.. ....+++++.|+||-|
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~----~V~iA-dRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDG----EVTIA-DRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCc----eEEEE-eCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 578999999999999999999998 5 99999 99999998887642 3221 1235678899999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcC
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
.|+..-..+++.. ++.+.-+++++.
T Consensus 76 ~p~~~~~~i~ka~---i~~gv~yvDts~ 100 (389)
T COG1748 76 APPFVDLTILKAC---IKTGVDYVDTSY 100 (389)
T ss_pred CCchhhHHHHHHH---HHhCCCEEEccc
Confidence 9988766666443 234556666544
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.9e-06 Score=74.11 Aligned_cols=70 Identities=20% Similarity=0.293 Sum_probs=56.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC-cee--ecCchhhhccCCEEEEeeCc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-VKV--LSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g-~~~--~~~~~~~~~~aDivil~v~~ 81 (272)
...+||.|||+|.||..++.+|.+.|. .+|+++ ||+.++++.+.+ .+ ..+ .++..+.+.++|+||.|++.
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~---~~I~V~-nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAP---KQIMLA-NRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV 252 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC
Confidence 356799999999999999999999885 279999 999999988877 34 332 24445678899999999954
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.8e-05 Score=68.66 Aligned_cols=96 Identities=14% Similarity=0.222 Sum_probs=63.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---------cCceeecCchhhhccCCEEEEee-
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---------IGVKVLSDNNAVVEYSDVVVFSV- 79 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---------~g~~~~~~~~~~~~~aDivil~v- 79 (272)
.+||+|||+|.+|++++..|...|.. .++.++ |++.++++.... ....+..+..+.+++||+||++-
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~--~el~L~-D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIA--DELVII-DINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 46999999999999999999988863 379999 998776543222 12344444456689999999986
Q ss_pred -Ccc---c-----------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 -KPQ---V-----------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 -~~~---~-----------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|.. . +++++.++..+ .++..++..+++..
T Consensus 83 ~~~k~g~~R~dll~~N~~i~~~i~~~i~~~-~~~~~vivvsNP~d 126 (315)
T PRK00066 83 APQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLVASNPVD 126 (315)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCcHH
Confidence 211 1 23334445444 35666666655443
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.8e-05 Score=70.71 Aligned_cols=89 Identities=11% Similarity=0.144 Sum_probs=70.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
....+++|+|+|.+|..++..+...|. +|.++ ++++.+.......|+... +.++++..+|+||.|+.... +
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga----~ViV~-d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~---~ 270 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA----RVIVT-EVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKD---I 270 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-ECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHH---H
Confidence 346799999999999999999999998 89999 999998888777888654 34677889999999985432 2
Q ss_pred HH-HhchhcCCCCEEEEEc
Q 024121 88 AM-QIRPLLSRKKLLVSVA 105 (272)
Q Consensus 88 ~~-~l~~~l~~~~~iis~~ 105 (272)
+. .....++++.+++...
T Consensus 271 i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 271 ITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred HHHHHHhcCCCCcEEEEeC
Confidence 32 2344567888888664
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-05 Score=69.26 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=63.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH--HH---HH---cC--cee--ecCchhhhccCCEE
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD--AF---ES---IG--VKV--LSDNNAVVEYSDVV 75 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~--~l---~~---~g--~~~--~~~~~~~~~~aDiv 75 (272)
.+.+||+|||+|.||+.++..+...|+ .+|.++ |+++++++ .+ .. .+ ..+ +.+. +.+++||+|
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl---~~i~Lv-Di~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiV 78 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNL---GDVVLF-DIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVV 78 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC---CeEEEE-eCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEE
Confidence 345799999999999999999988885 269999 99887532 11 11 12 233 2444 568999999
Q ss_pred EEee--C--ccc-----------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 76 VFSV--K--PQV-----------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 76 il~v--~--~~~-----------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|++. | +.. +.++++++.++. |+..++..+++.+
T Consensus 79 I~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~d 132 (321)
T PTZ00082 79 IVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPLD 132 (321)
T ss_pred EECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 9976 1 111 445556666654 5556666666554
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=70.59 Aligned_cols=90 Identities=20% Similarity=0.320 Sum_probs=64.4
Q ss_pred CCCCeEEEEcccHHH-HHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCce-eecCchhhhcc--CCEEEEeeCcc
Q 024121 8 AESFILGFIGAGKMA-ESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK-VLSDNNAVVEY--SDVVVFSVKPQ 82 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG-~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~~--aDivil~v~~~ 82 (272)
++++||||||+|.++ ......+.+.+.. ..-+.++ +|++++++.+.+ .|+. .+.|.++++++ .|+|++|+|++
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~-~~~vav~-d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGG-LELVAVV-DRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA 78 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCc-eEEEEEe-cCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh
Confidence 467899999999665 5577777776520 0145677 999999888877 6774 77788888875 59999999988
Q ss_pred cHHHHHHHhchhcCCCCEEE
Q 024121 83 VVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~ii 102 (272)
...++.... +..|+-|+
T Consensus 79 ~H~e~~~~A---L~aGkhVl 95 (342)
T COG0673 79 LHAELALAA---LEAGKHVL 95 (342)
T ss_pred hhHHHHHHH---HhcCCEEE
Confidence 665555332 34555555
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.4e-05 Score=69.82 Aligned_cols=88 Identities=15% Similarity=0.231 Sum_probs=64.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-----cCce--eecCchhhhccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-----IGVK--VLSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-----~g~~--~~~~~~~~~~~aDivil~v~ 80 (272)
+.++++|||+|.+|.+.+..+... +. .+|.+| +|++++++.+.+ .|+. ...+.++++.++|+|+.|+|
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~---~~V~v~-~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~ 206 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPI---REVRVW-ARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTP 206 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC---CEEEEE-cCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeC
Confidence 457899999999999998888753 32 389999 999999888866 2444 35677888999999999998
Q ss_pred cccHHHHHHHhchhcCCCCEEEEE
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
... .++.. ..+++++.+..+
T Consensus 207 s~~--p~i~~--~~l~~g~~v~~v 226 (330)
T PRK08291 207 SEE--PILKA--EWLHPGLHVTAM 226 (330)
T ss_pred CCC--cEecH--HHcCCCceEEee
Confidence 653 22321 124567665543
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.4e-05 Score=68.67 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=61.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c------------------CceeecCchhhhc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I------------------GVKVLSDNNAVVE 70 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~------------------g~~~~~~~~~~~~ 70 (272)
++||||+|+|.||..+++.+.+... -++...++++++....+.+ . ++.+..+..++..
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d---~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~ 77 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPD---MELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE 77 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCC---cEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc
Confidence 4699999999999999998876432 2665443777665554433 2 2344456677778
Q ss_pred cCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 71 ~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
++|+||.|+++....+...... +.|+.+|+.
T Consensus 78 ~vDVVIdaT~~~~~~e~a~~~~---~aGk~VI~~ 108 (341)
T PRK04207 78 KADIVVDATPGGVGAKNKELYE---KAGVKAIFQ 108 (341)
T ss_pred cCCEEEECCCchhhHHHHHHHH---HCCCEEEEc
Confidence 8999999999887776665433 345666654
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.2e-05 Score=66.48 Aligned_cols=95 Identities=20% Similarity=0.303 Sum_probs=64.5
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------c--C--ceeecCchhhhccCCEEEEeeC
Q 024121 13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------I--G--VKVLSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 13 IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------~--g--~~~~~~~~~~~~~aDivil~v~ 80 (272)
|+|||+ |.||..++..|...|.+...+|.++ |+++++++.... . . +..++|..+.+++||+||++.-
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~-D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLY-DIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEE-eCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCC
Confidence 689999 9999999999998882122389999 998866543222 1 2 2334454688999999999651
Q ss_pred c----------------ccHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 81 P----------------QVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 81 ~----------------~~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
. ..++++..++..+. |+.+++..+++..
T Consensus 80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d 123 (263)
T cd00650 80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVD 123 (263)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 1 12455566666654 7777776666554
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.2e-05 Score=58.79 Aligned_cols=92 Identities=12% Similarity=0.214 Sum_probs=71.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-----ecCchhhhccCCEEEEeeCccc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----LSDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----~~~~~~~~~~aDivil~v~~~~ 83 (272)
+.+||..||+| -|..++..|.+.|+ +|++. |.+++..+.+++.++.+ ++...+..+++|+|..+=||..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~----~ViaI-Di~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~e 89 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF----DVIVI-DINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRD 89 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHH
Confidence 34789999999 99899999999999 99999 99999888887766543 2344567889999999988887
Q ss_pred HHHHHHHhchhcCCCCEEEEEcC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+..-+-++...++.+-+|..+++
T Consensus 90 l~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 90 LQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCC
Confidence 76666667666655544444433
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00044 Score=57.51 Aligned_cols=162 Identities=15% Similarity=0.220 Sum_probs=104.1
Q ss_pred CceeecCchhhhccCCEEEEeeCccc-HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHh---C--CCCEEEEccCc-h
Q 024121 58 GVKVLSDNNAVVEYSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT---G--HSRFIRVMPNT-P 130 (272)
Q Consensus 58 g~~~~~~~~~~~~~aDivil~v~~~~-~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~---~--~~~~~~~~p~~-~ 130 (272)
|+++++|..|+++++|++|+-+|-.. -.++++++.++++.|.+|.+.+. ++.-.+.+.+ + +..+..+||.. |
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCT-Ipt~~ly~ilE~l~R~DvgVsS~HPaaVP 204 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACT-IPTTKFAKIFEDLGREDLNVTSYHPGCVP 204 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEecccc-CChHHHHHHHHhhCcccCCeeccCCCCCC
Confidence 67788888899999999999998655 57888899999999988887654 4544333333 3 35567777753 3
Q ss_pred hhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHH---HH-HHcCCCHHHH
Q 024121 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALAD---GG-VAAGLPRELA 205 (272)
Q Consensus 131 ~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~-~~~Gl~~~~a 205 (272)
..- ++..++ -.-.++++.+.+-++.+..++. +.+..+....+.-+ +.........++.+ .+ +-.|-+.+-+
T Consensus 205 gt~-~q~Yi~--egyAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DM-gS~VTAv~~aGiL~Y~~~~t~IlgAP~~mi 280 (340)
T TIGR01723 205 EMK-GQVYIA--EGYASEEAVNKLYELGKKARGKAFKMPANLLGPVCDM-CSAVTAIVYAGLLAYRDAVTKILGAPADFA 280 (340)
T ss_pred CCC-CceEee--cccCCHHHHHHHHHHHHHhCCCeeecchhhccchhhH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 322 223332 2235789999999999999965 77776543333211 11111122222222 12 3477788888
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 024121 206 LGLASQTVLGAASMVTKSG 224 (272)
Q Consensus 206 ~~~~~~~~~g~~~~~~~~~ 224 (272)
...+..++...+.+++++|
T Consensus 281 q~qa~eaL~tmasLme~~G 299 (340)
T TIGR01723 281 QMMADEALTQIHNLMEEKG 299 (340)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 8888888887777776544
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.9e-05 Score=67.21 Aligned_cols=95 Identities=15% Similarity=0.224 Sum_probs=63.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H----c---CceeecCchhhhccCCEEEEe
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----I---GVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~----~---g~~~~~~~~~~~~~aDivil~ 78 (272)
.+||+|||+|++|++++..|...|. ..++.++ |+++++++... . . .+..+.+.++ +++||+||++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~--~~el~Li-D~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvit 78 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGL--ADELVLV-DVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVT 78 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC--CCEEEEE-eCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEEC
Confidence 4699999999999999999988875 3479999 99876543222 1 1 1222345554 8999999997
Q ss_pred e--Cc--cc------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 79 V--KP--QV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 79 v--~~--~~------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
. |+ .. ++++.+.+..+ .|+.+++..+++..
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d 124 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPVD 124 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChHH
Confidence 5 22 11 22334455555 56777776766554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=2e-05 Score=69.94 Aligned_cols=91 Identities=21% Similarity=0.277 Sum_probs=66.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----c-C---ceeecCchhhhccCCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----I-G---VKVLSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~-g---~~~~~~~~~~~~~aDivil~v 79 (272)
+..+++|||+|.++......+...-- ...+|++| +|++++++.+.+ . + +.++.+.++++.+||+|+.|+
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~-~i~~V~v~-~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT 231 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCP-GIDTIKIK-GRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCN 231 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcC-CccEEEEE-CCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEcc
Confidence 56789999999999999998877321 13599999 999999887665 1 2 556788999999999999999
Q ss_pred Cccc----HHHHHHHhchhcCCCCEEEE
Q 024121 80 KPQV----VKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 80 ~~~~----~~~v~~~l~~~l~~~~~iis 103 (272)
+... ...++.. ..+++|+.|+.
T Consensus 232 ~s~~~~~s~~Pv~~~--~~lkpG~hv~~ 257 (379)
T PRK06199 232 SGETGDPSTYPYVKR--EWVKPGAFLLM 257 (379)
T ss_pred CCCCCCCCcCcEecH--HHcCCCcEEec
Confidence 6422 1233321 23578876653
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.9e-05 Score=65.50 Aligned_cols=94 Identities=17% Similarity=0.246 Sum_probs=61.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC-ce-----eecCchh-hhccCCEEEEeeC
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-VK-----VLSDNNA-VVEYSDVVVFSVK 80 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g-~~-----~~~~~~~-~~~~aDivil~v~ 80 (272)
++||+|||+ |.+|..+++.|.+... .++....+|.. ..+.+.+ .+ +. ...+..+ ...++|+||+|+|
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~---~elv~v~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP 77 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPE---VEIVAVTSRSS-AGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALP 77 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCC---ceEEEEECccc-cCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCC
Confidence 479999996 9999999999987632 26654326432 2222221 11 11 1222222 4568999999999
Q ss_pred cccHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
++...++..++. ..|+.|||.++..-.
T Consensus 78 ~~~~~~~v~~a~---~aG~~VID~S~~fR~ 104 (343)
T PRK00436 78 HGVSMDLAPQLL---EAGVKVIDLSADFRL 104 (343)
T ss_pred cHHHHHHHHHHH---hCCCEEEECCcccCC
Confidence 998888877664 367899998877644
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.6e-05 Score=70.25 Aligned_cols=76 Identities=16% Similarity=0.295 Sum_probs=59.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceee-cC------chhh-hccCCEEEEeeCc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL-SD------NNAV-VEYSDVVVFSVKP 81 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~-~~------~~~~-~~~aDivil~v~~ 81 (272)
|+|.|+|+|.+|..++..|.+.|+ +|.++ ++++++.+.+.+ .++.+. .+ ..++ +.++|.||++++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~----~v~vi-d~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN----DVTVI-DTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----cEEEE-ECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 689999999999999999999999 99999 999999888876 555432 11 1223 6789999999988
Q ss_pred ccHHHHHHHh
Q 024121 82 QVVKDVAMQI 91 (272)
Q Consensus 82 ~~~~~v~~~l 91 (272)
+.....+...
T Consensus 76 ~~~n~~~~~~ 85 (453)
T PRK09496 76 DETNMVACQI 85 (453)
T ss_pred hHHHHHHHHH
Confidence 7766554333
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00057 Score=56.74 Aligned_cols=162 Identities=14% Similarity=0.221 Sum_probs=104.0
Q ss_pred CceeecCchhhhccCCEEEEeeCccc-HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHh---C--CCCEEEEccCc-h
Q 024121 58 GVKVLSDNNAVVEYSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT---G--HSRFIRVMPNT-P 130 (272)
Q Consensus 58 g~~~~~~~~~~~~~aDivil~v~~~~-~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~---~--~~~~~~~~p~~-~ 130 (272)
|+++++|..|+++++|++++-+|-.. -..+++++.++++.|.+|.+.+. ++.-.+.+.+ + +..+..+||.. |
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCT-Ipt~~ly~~le~l~R~DvgIsS~HPaaVP 206 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACT-IPTTKFAKIFKDLGRDDLNVTSYHPGAVP 206 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEecccc-CCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence 67788888899999999999998654 57888899999999988887654 5554444333 2 34567777642 2
Q ss_pred hhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHH---HH-HHcCCCHHHH
Q 024121 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALAD---GG-VAAGLPRELA 205 (272)
Q Consensus 131 ~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~-~~~Gl~~~~a 205 (272)
.. .|...+.- .-.++++.+.+-++.+..|+. +.+..+....+.-+ +.........++.+ .+ +-.|-+.+-+
T Consensus 207 gt--~Gq~~i~e-gyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DM-gS~VTAv~~aGiL~Y~~~~tqIlgAP~~mi 282 (342)
T PRK00961 207 EM--KGQVYIAE-GYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDM-CSAVTAIVYAGILAYRDAVTQILGAPADFA 282 (342)
T ss_pred CC--CCceeccc-ccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 22 23333321 224789999999999999965 77776544333211 11111122222222 12 3467788888
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 024121 206 LGLASQTVLGAASMVTKSG 224 (272)
Q Consensus 206 ~~~~~~~~~g~~~~~~~~~ 224 (272)
.+.+..++...+.+++++|
T Consensus 283 e~qa~eaL~tmasLme~~G 301 (342)
T PRK00961 283 QMMADEALTQITALMREEG 301 (342)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 8888888887777776644
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.9e-05 Score=68.89 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=64.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceee------cCchhhhccCCEEEEeeCc-
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL------SDNNAVVEYSDVVVFSVKP- 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~------~~~~~~~~~aDivil~v~~- 81 (272)
..++.|||+|.+|...++.+...|. +|+++ +|++++.+.+.. .+..+. .+..+.+.++|+||.|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa----~V~v~-d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~ 241 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGA----TVTIL-DINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIP 241 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccC
Confidence 4679999999999999999999998 89999 999988877765 343221 2235567899999999732
Q ss_pred -ccHHHHH-HHhchhcCCCCEEEEEc
Q 024121 82 -QVVKDVA-MQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 82 -~~~~~v~-~~l~~~l~~~~~iis~~ 105 (272)
.....++ .+....++++.+|+++.
T Consensus 242 g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 242 GAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 1111111 22333457888999864
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.9e-05 Score=67.37 Aligned_cols=94 Identities=13% Similarity=0.196 Sum_probs=64.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC----ceeecCchhhhccCCEEEEeeCcc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----VKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g----~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
...+++.|+|+|.+|.+++..|.+.|. .+|+++ +|+.++++.+.+ .+ +....+..+.+.++|+||-|+|..
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~---~~V~v~-~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGV---AEITIV-NRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 456789999999999999999999983 289999 999999888766 22 222112335567899999999854
Q ss_pred cHHH--HHHHhchhcCCCCEEEEEc
Q 024121 83 VVKD--VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 83 ~~~~--v~~~l~~~l~~~~~iis~~ 105 (272)
.... ...-....++++.+++|+.
T Consensus 197 ~~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 197 MSGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CCCCCCCCCCCHHHcCCCCEEEEee
Confidence 3211 0000012346677888774
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.02 E-value=2e-05 Score=63.55 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=62.9
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c----Cce--ee--cCc---hhhhccCCE
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----GVK--VL--SDN---NAVVEYSDV 74 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~----g~~--~~--~~~---~~~~~~aDi 74 (272)
.+.+++.|+|. |.+|..++..|.+.|+ +|+++ +|+.++.+.+.+ . +.. .. .+. .+.++++|+
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~----~V~l~-~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~di 100 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGA----RVVLV-GRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADV 100 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCE
Confidence 35679999995 9999999999999998 99999 999988877654 1 222 11 121 356778999
Q ss_pred EEEeeCcccHHHHHHHhchhcCCCCEEEEEc
Q 024121 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 75 vil~v~~~~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
||.++|..... ........+++.+++|+.
T Consensus 101 Vi~at~~g~~~--~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 101 VFAAGAAGVEL--LEKLAWAPKPLAVAADVN 129 (194)
T ss_pred EEECCCCCcee--chhhhcccCceeEEEEcc
Confidence 99999765531 111112234566778764
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=2e-05 Score=70.25 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=71.2
Q ss_pred CeEEEEcccHHHHHH-HHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce---e---------------ec--Cchh--
Q 024121 11 FILGFIGAGKMAESI-AKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK---V---------------LS--DNNA-- 67 (272)
Q Consensus 11 ~~IgiIG~G~mG~~l-a~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~---~---------------~~--~~~~-- 67 (272)
|||.++|+|+||++. +..|.++|+ +|++. +++++..+.+.+.|.- + .. +.++
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~----~V~~v-d~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~ 75 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGF----EVTFV-DVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVI 75 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHH
Confidence 789999999999855 777888998 99999 9988888888775521 1 00 1122
Q ss_pred -hhccCCEEEEeeCcccHHHHHHHhchhcCC--------CCEEEEEcCCCCH-HHHHHH
Q 024121 68 -VVEYSDVVVFSVKPQVVKDVAMQIRPLLSR--------KKLLVSVAAGVKL-KDLQEW 116 (272)
Q Consensus 68 -~~~~aDivil~v~~~~~~~v~~~l~~~l~~--------~~~iis~~~~~~~-~~l~~~ 116 (272)
.+.++|+|.++|++...+++...+.+.+.+ .-+|++|.++..- +.+++.
T Consensus 76 ~~~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~~ 134 (381)
T PRK02318 76 EAIAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTSFLKKH 134 (381)
T ss_pred HHhcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHHHHHHH
Confidence 234789999999888777777666554432 2378899888765 334433
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.9e-05 Score=67.02 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=47.8
Q ss_pred CeEEEEcccHHHHHHHH--HHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeecCchhhhccCCEEE
Q 024121 11 FILGFIGAGKMAESIAK--GVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVV 76 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~--~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDivi 76 (272)
+||+|||+|.||.+.+. .+....-+...+|.++ |+++++++.... .+ +..+.|..+++++||+||
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLv-Did~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv 80 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALM-DIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVI 80 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEE-CCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEe
Confidence 79999999999976655 5552211233489999 999987653211 12 334556578899999999
Q ss_pred EeeC
Q 024121 77 FSVK 80 (272)
Q Consensus 77 l~v~ 80 (272)
.++-
T Consensus 81 ~ti~ 84 (431)
T PRK15076 81 NAIQ 84 (431)
T ss_pred Eeee
Confidence 9973
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.5e-05 Score=61.28 Aligned_cols=76 Identities=13% Similarity=0.224 Sum_probs=57.4
Q ss_pred CCCCeEEEEcccHH-HHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIGAGKM-AESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~m-G~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
...++|.|||+|.| |..+++.|.+.|. +|++. +|+.+ +..+.+.++|+||.|++...+
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~----~V~v~-~r~~~--------------~l~~~l~~aDiVIsat~~~~i-- 100 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA----TVTVC-HSKTK--------------NLKEHTKQADIVIVAVGKPGL-- 100 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC----EEEEE-ECCch--------------hHHHHHhhCCEEEEcCCCCce--
Confidence 46789999999997 8889999999998 89999 88742 345668899999999975432
Q ss_pred HHHHhchhcCCCCEEEEEcCC
Q 024121 87 VAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~ 107 (272)
+-.+ .++++.++||+..+
T Consensus 101 i~~~---~~~~~~viIDla~p 118 (168)
T cd01080 101 VKGD---MVKPGAVVIDVGIN 118 (168)
T ss_pred ecHH---HccCCeEEEEccCC
Confidence 1111 24567888887543
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.6e-05 Score=52.91 Aligned_cols=64 Identities=19% Similarity=0.345 Sum_probs=48.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-HHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-VKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~~~ 86 (272)
...++++|+|+|.+|..++..+.+.+. .+|++| +| |++|.|++... +.+
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~---~~v~v~-~r--------------------------di~i~~~~~~~~~~~ 70 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGG---KKVVLC-DR--------------------------DILVTATPAGVPVLE 70 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cC--------------------------CEEEEcCCCCCCchH
Confidence 456899999999999999999999842 289999 88 99999996544 322
Q ss_pred HHHHhchhcCCCCEEEEE
Q 024121 87 VAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~ 104 (272)
+....++++.+|+++
T Consensus 71 ---~~~~~~~~~~~v~~~ 85 (86)
T cd05191 71 ---EATAKINEGAVVIDL 85 (86)
T ss_pred ---HHHHhcCCCCEEEec
Confidence 112234677888765
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00012 Score=64.59 Aligned_cols=83 Identities=19% Similarity=0.266 Sum_probs=57.3
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHHc-CceeecCchhhhc--cCCEEEEeeCccc
Q 024121 10 SFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFESI-GVKVLSDNNAVVE--YSDVVVFSVKPQV 83 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~aDivil~v~~~~ 83 (272)
.+||||||+|.||.. .+..+.+. +. ++. ++ +++++++. .+. +...+.|.+++++ +.|+|++|+|+..
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~----~l~av~-d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~ 76 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGL----ELAAVS-SSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDT 76 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCC----EEEEEE-CCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 479999999999984 45555543 34 665 56 99987654 233 5567788888886 5799999999876
Q ss_pred HHHHHHHhchhcCCCCEEE
Q 024121 84 VKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~ii 102 (272)
..++..+.. ..|+-|+
T Consensus 77 H~~~~~~al---~aGkhVl 92 (346)
T PRK11579 77 HFPLAKAAL---EAGKHVV 92 (346)
T ss_pred HHHHHHHHH---HCCCeEE
Confidence 555554433 3455554
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.95 E-value=7e-05 Score=63.70 Aligned_cols=87 Identities=13% Similarity=0.189 Sum_probs=60.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHH--HHHHHcCceee-cCchhhhc--cCCEEEEeeCcccH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRR--DAFESIGVKVL-SDNNAVVE--YSDVVVFSVKPQVV 84 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~--~~l~~~g~~~~-~~~~~~~~--~aDivil~v~~~~~ 84 (272)
+||||||+|+||..++..+.+... .++. ++ ++++++. +...+.|+... .+.+++++ +.|+||+|+|+...
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~---~elvaV~-d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H 77 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEH---LEMVAMV-GIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAH 77 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCC---cEEEEEE-eCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHH
Confidence 689999999999988887776432 1554 56 8888653 33344787643 46666665 57899999998877
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.+...... ..|+.+++.
T Consensus 78 ~e~a~~al---~aGk~VIde 94 (285)
T TIGR03215 78 ARHARLLA---ELGKIVIDL 94 (285)
T ss_pred HHHHHHHH---HcCCEEEEC
Confidence 66665443 456777654
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.1e-05 Score=63.98 Aligned_cols=95 Identities=15% Similarity=0.286 Sum_probs=62.8
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH----HHHH----c---CceeecCchhhhccCCEEEEee-
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES----I---GVKVLSDNNAVVEYSDVVVFSV- 79 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~----~---g~~~~~~~~~~~~~aDivil~v- 79 (272)
||+|||+|++|+++|..|...+. ..++.++ |+++++++ +|.. . .+.+..+..+.+++||+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~--~~elvL~-Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGL--FSEIVLI-DVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCC--CCEEEEE-eCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 79999999999999999998876 3379999 99876543 2222 1 2334334456789999999986
Q ss_pred -C--cccH--------------HHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 80 -K--PQVV--------------KDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 80 -~--~~~~--------------~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
| |..- +++.+++..+ .|+.+++-.+++...
T Consensus 78 ~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvsNPvDv 124 (307)
T cd05290 78 PSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILITNPLDI 124 (307)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecCcHHH
Confidence 2 2221 2233444444 366777767676543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00021 Score=52.36 Aligned_cols=84 Identities=20% Similarity=0.352 Sum_probs=59.2
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCc--hh-----hhccCCEEEEeeCcccH
Q 024121 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NA-----VVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~--~~-----~~~~aDivil~v~~~~~ 84 (272)
|-|+|+|.+|..+++.|.+.+. +|.+. ++++++.+.+.+.|+.+. .|. .+ -+++++.|+++++.+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~----~vvvi-d~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI----DVVVI-DRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS----EEEEE-ESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCC----EEEEE-ECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHH
Confidence 5689999999999999999876 89999 999999999988876542 221 11 25689999999987754
Q ss_pred HHHH-HHhchhcCCCCEEE
Q 024121 85 KDVA-MQIRPLLSRKKLLV 102 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~ii 102 (272)
.-.+ ..+.. +.+...++
T Consensus 76 n~~~~~~~r~-~~~~~~ii 93 (116)
T PF02254_consen 76 NLLIALLARE-LNPDIRII 93 (116)
T ss_dssp HHHHHHHHHH-HTTTSEEE
T ss_pred HHHHHHHHHH-HCCCCeEE
Confidence 4333 33333 33544444
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.2e-05 Score=64.83 Aligned_cols=93 Identities=18% Similarity=0.245 Sum_probs=62.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c----C-ceee--cCchhhhccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----G-VKVL--SDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~----g-~~~~--~~~~~~~~~aDivil~v~ 80 (272)
..+++.|||+|.+|++++..|.+.|. .+|+++ ||+.++++.+.+ . . ..+. .+..+.+.++|+||-|+|
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~---~~I~I~-nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp 201 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGV---ERLTIF-DVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATP 201 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCc
Confidence 45789999999999999999999886 379999 999999888865 1 1 2221 233345678999999987
Q ss_pred cccHHHHHHHhc-hhcCCCCEEEEEc
Q 024121 81 PQVVKDVAMQIR-PLLSRKKLLVSVA 105 (272)
Q Consensus 81 ~~~~~~v~~~l~-~~l~~~~~iis~~ 105 (272)
.......-..+. ..++++.+++|+.
T Consensus 202 ~Gm~~~~~~~~~~~~l~~~~~v~Div 227 (284)
T PRK12549 202 TGMAKHPGLPLPAELLRPGLWVADIV 227 (284)
T ss_pred CCCCCCCCCCCCHHHcCCCcEEEEee
Confidence 542110000010 2255666777764
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00013 Score=60.18 Aligned_cols=98 Identities=20% Similarity=0.283 Sum_probs=66.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC----HHHH-------HHHHH-cCc-eeecCchhhhccCC
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN----LKRR-------DAFES-IGV-KVLSDNNAVVEYSD 73 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~----~~~~-------~~l~~-~g~-~~~~~~~~~~~~aD 73 (272)
..+.+||.|+|+|.+|.+++..|.+.|. +.++|+++ ||+ .++. +.+.+ .+. ....+..+.++++|
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~-~~~~i~iv-dr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~d 99 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGA-KPENIVVV-DSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGAD 99 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCc-CcceEEEE-eCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCC
Confidence 3456899999999999999999999987 22269999 998 4432 23333 221 11124557788999
Q ss_pred EEEEeeCcccH-HHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 74 VVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 74 ivil~v~~~~~-~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
+||-++++..+ +++++.+ .++.++++++++.+.
T Consensus 100 vlIgaT~~G~~~~~~l~~m----~~~~ivf~lsnP~~e 133 (226)
T cd05311 100 VFIGVSRPGVVKKEMIKKM----AKDPIVFALANPVPE 133 (226)
T ss_pred EEEeCCCCCCCCHHHHHhh----CCCCEEEEeCCCCCc
Confidence 99999976544 3444444 366777777776544
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.3e-05 Score=64.55 Aligned_cols=91 Identities=23% Similarity=0.324 Sum_probs=60.0
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH----c--Ccee--ecCchhhhccCCEEEEeeC
Q 024121 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----I--GVKV--LSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~----~--g~~~--~~~~~~~~~~aDivil~v~ 80 (272)
|+|||+|.||..++..+...|+. +|+++ |+++++++. +.. . ...+ ..+ .+.+++||+||+++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~---eV~L~-Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG---DVVLL-DIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc---EEEEE-eCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEecC
Confidence 68999999999999999888752 89999 998765421 111 1 1223 234 355899999999872
Q ss_pred -c---c------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 81 -P---Q------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 81 -~---~------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
| . .+++++.++.++. |+.++|-.+++..
T Consensus 76 ~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~d 119 (300)
T cd01339 76 IPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLD 119 (300)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 1 1 1345566666655 5556665656553
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00018 Score=63.17 Aligned_cols=95 Identities=19% Similarity=0.331 Sum_probs=62.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H----c-Cceee--cCchhhhccCCEEEEee
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----I-GVKVL--SDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~----~-g~~~~--~~~~~~~~~aDivil~v 79 (272)
+||+|||+|++|++++..|...+. ..++.++ |+++++++..+ . . ...+. .+. +.+++||+||++-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l--~~el~Li-Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDL--ADELALV-DVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--CCEEEEE-eCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECC
Confidence 699999999999999999998775 3479999 99876543222 1 1 13443 233 4489999999995
Q ss_pred --C--ccc------------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 80 --K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 80 --~--~~~------------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
| +.. ++++...+..+ .|+.+++..+++...
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPvdv 159 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPVDV 159 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCchHH
Confidence 2 111 12333445554 466677777666543
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.7e-05 Score=66.01 Aligned_cols=92 Identities=15% Similarity=0.228 Sum_probs=61.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-c----C---ceee-cCchhhhccCCEEEEee
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-I----G---VKVL-SDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~----g---~~~~-~~~~~~~~~aDivil~v 79 (272)
|||+|||+ |.+|..+.+.|.+.-. .++. ++ ++....-+.+.. . + ..+. .+..+...++|+||+|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~---~el~~l~-~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~al 76 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE---VEITYLV-SSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLAL 76 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC---ceEEEEe-ccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECC
Confidence 68999998 9999999999987522 2666 55 443322222221 1 1 1121 13445556899999999
Q ss_pred CcccHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|.....++..++. ..|..|||.++..-
T Consensus 77 P~~~s~~~~~~~~---~~G~~VIDlS~~fR 103 (346)
T TIGR01850 77 PHGVSAELAPELL---AAGVKVIDLSADFR 103 (346)
T ss_pred CchHHHHHHHHHH---hCCCEEEeCChhhh
Confidence 9998888887764 35788999876553
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=7.5e-05 Score=68.49 Aligned_cols=70 Identities=20% Similarity=0.319 Sum_probs=54.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceee--cCchhhhccCCEEEEeeCccc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL--SDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~--~~~~~~~~~aDivil~v~~~~ 83 (272)
...++++|+|+|.+|.+++..|.+.|+ +|+++ +|++++.+.+.+ .+.... .+..+ +.++|+||.|+|...
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~----~V~i~-~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g~ 402 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA----ELLIF-NRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPSV 402 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCCC
Confidence 456789999999999999999999998 99999 999988887765 232221 12222 568999999998764
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00013 Score=63.58 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=65.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCHH--HHH----HHHH------cCceeecCchhhhcc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLK--RRD----AFES------IGVKVLSDNNAVVEY 71 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~~--~~~----~l~~------~g~~~~~~~~~~~~~ 71 (272)
.+.+||+|||+ |++|++++..|...+... +.++.++ |+++. +++ ++.. .+..+..+..+.+++
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~Li-Di~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLL-EIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEE-ecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 45679999998 999999999998876521 1268888 88542 221 1211 123444455577899
Q ss_pred CCEEEEee--C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 72 SDVVVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 72 aDivil~v--~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
||+||++- | +. . ++++.++|..+..++.+++-.++++..
T Consensus 81 aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv 135 (326)
T PRK05442 81 ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANT 135 (326)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHH
Confidence 99999985 2 21 1 334445566655467777767676554
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0001 Score=63.62 Aligned_cols=93 Identities=15% Similarity=0.265 Sum_probs=62.0
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------c--Cceee-cCchhhhccCCEEEEeeC--
Q 024121 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------I--GVKVL-SDNNAVVEYSDVVVFSVK-- 80 (272)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------~--g~~~~-~~~~~~~~~aDivil~v~-- 80 (272)
|+|||+|.+|++++..|+..|.. .++.++ |+++++++.... . ...+. .+..+.+++||+||++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~--~el~l~-D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p 77 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLA--SELVLV-DVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAP 77 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCC
Confidence 68999999999999999988842 279999 998876654433 1 11222 122457899999999973
Q ss_pred ccc--------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 81 PQV--------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 81 ~~~--------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
... ++++..++..+- |+.+++..+++..
T Consensus 78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d 119 (300)
T cd00300 78 RKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVD 119 (300)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHH
Confidence 211 334445555554 6667776666543
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00014 Score=63.06 Aligned_cols=101 Identities=15% Similarity=0.221 Sum_probs=62.1
Q ss_pred CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH--HHHH--cCcee--ecCc---hhhhccCCE
Q 024121 5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD--AFES--IGVKV--LSDN---NAVVEYSDV 74 (272)
Q Consensus 5 ~~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~--~l~~--~g~~~--~~~~---~~~~~~aDi 74 (272)
|.-.++.||+|||+ |++|+.++..|...+. ..++.++ |++....+ ++.. ....+ ..+. .+.++++|+
T Consensus 3 ~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~--~~elvL~-Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDv 79 (321)
T PTZ00325 3 PSALKMFKVAVLGAAGGIGQPLSLLLKQNPH--VSELSLY-DIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADL 79 (321)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHhcCCC--CCEEEEE-ecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCE
Confidence 44456779999999 9999999999986654 2389999 98432221 2222 11222 2221 467899999
Q ss_pred EEEee-C-cc--------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 75 VVFSV-K-PQ--------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 75 vil~v-~-~~--------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|+++. . .. .++++++.+..+ .++.+|+-.++++.
T Consensus 80 VVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvd 129 (321)
T PTZ00325 80 VLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVN 129 (321)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHH
Confidence 99987 2 11 112333445444 56667776666554
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00027 Score=57.19 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=30.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
...||+|+|+|.||+.++..|...|+ .+++++ |++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gv---g~i~lv-D~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGI---GKLILV-DFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC---CEEEEE-CCC
Confidence 34689999999999999999999998 258888 776
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00058 Score=59.79 Aligned_cols=98 Identities=13% Similarity=0.207 Sum_probs=69.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC--CCCCCcEE-EEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCc---
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSG--VLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKP--- 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g--~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~--- 81 (272)
+..||+|||+ .||...+..+.+.. + ++. ++ ++++++++++.+ .|+....+.++++.+.|++++++|.
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~----eLvaV~-d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P 75 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERF----ELAGIL-AQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIV 75 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCc----EEEEEE-cCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCC
Confidence 4579999999 68999998887753 4 655 56 999999988887 7887788999999888888888742
Q ss_pred -ccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHH
Q 024121 82 -QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW 116 (272)
Q Consensus 82 -~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~ 116 (272)
..-.++..+. +..|+-|+ +-+++..++.++.
T Consensus 76 ~~~H~e~a~~a---L~aGkHVL-~EKPla~~Ea~el 107 (343)
T TIGR01761 76 GGQGSALARAL---LARGIHVL-QEHPLHPRDIQDL 107 (343)
T ss_pred CccHHHHHHHH---HhCCCeEE-EcCCCCHHHHHHH
Confidence 3434444333 34555555 3356655554443
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00017 Score=53.07 Aligned_cols=94 Identities=18% Similarity=0.314 Sum_probs=63.9
Q ss_pred CeEEEEc----ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 11 FILGFIG----AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG----~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
++|+||| -+..|..+.++|.+.|+ +|+.. +...... .|.....+..|.-...|++++++|++.+.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~----~v~~V-np~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~~~~~~ 70 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGY----EVYPV-NPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPPDKVPE 70 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-----EEEEE-STTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-HHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCC----EEEEE-CCCceEE-----CcEEeeccccCCCCCCCEEEEEcCHHHHHH
Confidence 5799999 59999999999999999 99988 6654222 577788888874478999999999999999
Q ss_pred HHHHhchhcCCCCEEEEEcCCCCHHHHHHHh
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~ 117 (272)
+++++... ....+|+ .++...+++.+..
T Consensus 71 ~v~~~~~~-g~~~v~~--~~g~~~~~~~~~a 98 (116)
T PF13380_consen 71 IVDEAAAL-GVKAVWL--QPGAESEELIEAA 98 (116)
T ss_dssp HHHHHHHH-T-SEEEE---TTS--HHHHHHH
T ss_pred HHHHHHHc-CCCEEEE--EcchHHHHHHHHH
Confidence 99987654 3444555 3444444444443
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00025 Score=57.48 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=58.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcC-ceeecC--chhhhccCCEEEEeeCccc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-VKVLSD--NNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g-~~~~~~--~~~~~~~aDivil~v~~~~ 83 (272)
.+.++|.|||.|.+|...++.|.+.|+ +|+++ +++. +.+..+...+ +..... ..+.+.++|+||.|+.++.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga----~V~VI-s~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGA----HIVVI-SPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-cCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence 356899999999999999999999998 99999 8764 2334444433 332211 1234678999999998888
Q ss_pred HHHHHHHhc
Q 024121 84 VKDVAMQIR 92 (272)
Q Consensus 84 ~~~v~~~l~ 92 (272)
+...+.+..
T Consensus 83 lN~~i~~~a 91 (202)
T PRK06718 83 VNEQVKEDL 91 (202)
T ss_pred HHHHHHHHH
Confidence 877765544
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00015 Score=61.93 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=53.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC----ceeec---CchhhhccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----VKVLS---DNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g----~~~~~---~~~~~~~~aDivil~v~ 80 (272)
..+++.|||+|-+|++++..|.+.|. .+|+++ +|++++++.+.+ .+ +.... +..+.+.++|+||-|+|
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~---~~i~I~-nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp 199 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGV---TDITVI-NRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVP 199 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCC---CeEEEE-eCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCC
Confidence 46789999999999999999999986 379999 999999988876 21 11111 12244568999999997
Q ss_pred cc
Q 024121 81 PQ 82 (272)
Q Consensus 81 ~~ 82 (272)
..
T Consensus 200 ~g 201 (282)
T TIGR01809 200 AD 201 (282)
T ss_pred CC
Confidence 54
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00015 Score=62.73 Aligned_cols=95 Identities=24% Similarity=0.303 Sum_probs=61.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH--HHHHH----HH----HcC--cee--ecCchhhhccCCEE
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDA----FE----SIG--VKV--LSDNNAVVEYSDVV 75 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~~----l~----~~g--~~~--~~~~~~~~~~aDiv 75 (272)
|||+|||+ |.+|..++..|...|+. .+|.++ +|++ ++++. +. ..+ ..+ ..+ .+.+.+||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~--~~v~lv-d~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVV--KEINLI-SRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC--CEEEEE-ECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEE
Confidence 79999998 99999999999998871 258888 8854 33321 11 112 223 234 4558999999
Q ss_pred EEeeC--cc---c-----------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 76 VFSVK--PQ---V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 76 il~v~--~~---~-----------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
|+|+. .. . ++++...+.++. ++.++|-.+++++.
T Consensus 77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~ 126 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDV 126 (309)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHH
Confidence 99983 21 1 334445555554 55566656666554
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00015 Score=57.63 Aligned_cols=61 Identities=20% Similarity=0.334 Sum_probs=49.2
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee----c---CchhhhccCCEEEEeeC
Q 024121 13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----S---DNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 13 IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~----~---~~~~~~~~aDivil~v~ 80 (272)
|.|+|+ |.+|..+++.|++.|+ +|++. .|++++.+. ..++++. . +..++++++|.||.+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~----~V~~~-~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH----EVTAL-VRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS----EEEEE-ESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCH
T ss_pred eEEECCCChHHHHHHHHHHHCCC----EEEEE-ecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhh
Confidence 678985 9999999999999999 99999 999988776 4455432 1 23456779999999995
|
... |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00035 Score=61.94 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=65.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCC-CCcEEE----EeCCCHHHHHHHHH----------cCceeecCchhhhccCC
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLP-PDRICT----AVHSNLKRRDAFES----------IGVKVLSDNNAVVEYSD 73 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~-~~~V~v----~~~r~~~~~~~l~~----------~g~~~~~~~~~~~~~aD 73 (272)
..||+|||+ |++|++++..|...+... ..+|.+ + |++.++++..+- .++.+..+..+.+++||
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-D~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaD 122 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-ERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAD 122 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-CccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCC
Confidence 469999999 999999999999888743 123544 5 777776543221 13444455567799999
Q ss_pred EEEEee--C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 74 VVVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 74 ivil~v--~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
+||++- | |. . ++++...|.++.+|+.+++-.+++...
T Consensus 123 IVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv 175 (387)
T TIGR01757 123 WALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNT 175 (387)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHH
Confidence 999975 2 21 2 334445566655577777766666543
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00056 Score=64.68 Aligned_cols=88 Identities=13% Similarity=0.198 Sum_probs=65.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCc--hhh-----hccCCEEEEeeCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NAV-----VEYSDVVVFSVKP 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~--~~~-----~~~aDivil~v~~ 81 (272)
..+|-|+|+|++|+.+++.|.+.|+ ++++. |+|+++.+.+++.|..+. .|. .+. ++++|.+++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~----~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d 474 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM----RITVL-ERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNE 474 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC----CEEEE-ECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCC
Confidence 3679999999999999999999999 99999 999999999988776532 221 222 5689999999987
Q ss_pred ccHH-HHHHHhchhcCCCCEEEE
Q 024121 82 QVVK-DVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 82 ~~~~-~v~~~l~~~l~~~~~iis 103 (272)
+... .++..++.. .|+..++.
T Consensus 475 ~~~n~~i~~~~r~~-~p~~~Iia 496 (601)
T PRK03659 475 PEDTMKIVELCQQH-FPHLHILA 496 (601)
T ss_pred HHHHHHHHHHHHHH-CCCCeEEE
Confidence 6544 444444443 45544543
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00035 Score=61.54 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=51.7
Q ss_pred CCeEEEEcccHHHHH-HHHHHHh--CCCCCCCcEE-EEeCCCHHHHHHHHHcC-ceeecCchhhhc--cCCEEEEeeCcc
Q 024121 10 SFILGFIGAGKMAES-IAKGVAK--SGVLPPDRIC-TAVHSNLKRRDAFESIG-VKVLSDNNAVVE--YSDVVVFSVKPQ 82 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~-la~~l~~--~g~~~~~~V~-v~~~r~~~~~~~l~~~g-~~~~~~~~~~~~--~aDivil~v~~~ 82 (272)
+.||||||+|.++.. .+..+.. .++ +|. ++ ++++++.+...+.+ +...+|.+++++ +.|+|++|+|+.
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~----~l~av~-d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~ 75 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSW----HVAHIF-RRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD 75 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCE----EEEEEE-cCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence 368999999998753 3444433 234 665 56 99886653333454 666778888886 579999999988
Q ss_pred cHHHHHHH
Q 024121 83 VVKDVAMQ 90 (272)
Q Consensus 83 ~~~~v~~~ 90 (272)
...++...
T Consensus 76 ~H~~~~~~ 83 (344)
T PRK10206 76 SHFEYAKR 83 (344)
T ss_pred HHHHHHHH
Confidence 65555544
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00014 Score=63.52 Aligned_cols=95 Identities=13% Similarity=0.241 Sum_probs=59.9
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-HHHcC--ceeecCchhhhccCCEEEEeeCccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-FESIG--VKVLSDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-l~~~g--~~~~~~~~~~~~~aDivil~v~~~~ 83 (272)
++++||+|+|+ |..|.-+.+.|.+.+| +..++....++ +++-+ +.-.+ ..+.....+.++++|++|+|+|+..
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~h-P~~~l~~v~s~--~~aG~~l~~~~~~l~~~~~~~~~~~~vD~vFla~p~~~ 78 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDF-PVGTLHLLASS--ESAGHSVPFAGKNLRVREVDSFDFSQVQLAFFAAGAAV 78 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCC-CceEEEEEECc--ccCCCeeccCCcceEEeeCChHHhcCCCEEEEcCCHHH
Confidence 34589999997 9999999999998777 43444444122 22111 11112 2222111222578999999999877
Q ss_pred HHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
..++.+.+. ..|..+||.++..
T Consensus 79 s~~~v~~~~---~~G~~VIDlS~~f 100 (336)
T PRK05671 79 SRSFAEKAR---AAGCSVIDLSGAL 100 (336)
T ss_pred HHHHHHHHH---HCCCeEEECchhh
Confidence 777666654 3577899987654
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0002 Score=55.70 Aligned_cols=85 Identities=14% Similarity=0.237 Sum_probs=59.5
Q ss_pred CCCCCCCC--CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC-ceeec-Cc-hhhhccCCEE
Q 024121 1 MDAFPIPA--ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-VKVLS-DN-NAVVEYSDVV 75 (272)
Q Consensus 1 ~~~~~~~~--~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g-~~~~~-~~-~~~~~~aDiv 75 (272)
|.-||-.. +.++|.|||.|.+|...++.|.+.|+ +|+++ ++. ..+++.+.+ +.... .. ++-++++|+|
T Consensus 2 ~~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga----~V~VI-sp~--~~~~l~~l~~i~~~~~~~~~~dl~~a~lV 74 (157)
T PRK06719 2 YNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGA----FVTVV-SPE--ICKEMKELPYITWKQKTFSNDDIKDAHLI 74 (157)
T ss_pred CcccceEEEcCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCc--cCHHHHhccCcEEEecccChhcCCCceEE
Confidence 33455543 35799999999999999999999999 99999 643 333444422 22211 11 2236789999
Q ss_pred EEeeCcccHHHHHHHhc
Q 024121 76 VFSVKPQVVKDVAMQIR 92 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~ 92 (272)
|.++.++.+...+.+..
T Consensus 75 iaaT~d~e~N~~i~~~a 91 (157)
T PRK06719 75 YAATNQHAVNMMVKQAA 91 (157)
T ss_pred EECCCCHHHHHHHHHHH
Confidence 99999888887776554
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00019 Score=62.27 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=60.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHH---HHHHHcC--cee----ecCchhhhccCCEEEEee
Q 024121 11 FILGFIGA-GKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRR---DAFESIG--VKV----LSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~---~~l~~~g--~~~----~~~~~~~~~~aDivil~v 79 (272)
|||+|||+ |.+|++++..|.. .+. ..++.++ +|++... -++...+ ..+ ..+..+.++++|+||+|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~--~~el~L~-d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIita 77 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPA--GSELSLY-DIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISA 77 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCC--ccEEEEE-ecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcC
Confidence 79999999 9999999988754 222 2278899 8875421 1232211 222 234356788999999997
Q ss_pred --Ccc--------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 --KPQ--------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 --~~~--------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
+.. .++++++.+.++ .++.+++..+++..
T Consensus 78 G~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D 122 (312)
T PRK05086 78 GVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVN 122 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchH
Confidence 222 234445556555 57777777777664
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00018 Score=56.31 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=49.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc---Cceeec--CchhhhccCCEEEEee
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---GVKVLS--DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~---g~~~~~--~~~~~~~~aDivil~v 79 (272)
|||+|||+ |..|+.|.+-..+.|| +|+.+ -||+++....+.. ...+++ +..+.+..-|+||.+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH----eVTAi-vRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~ 70 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH----EVTAI-VRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAF 70 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC----eeEEE-EeChHhccccccceeecccccChhhhHhhhcCCceEEEec
Confidence 79999998 9999999999999999 99999 8999887554221 112222 2235678899999998
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00041 Score=68.61 Aligned_cols=91 Identities=24% Similarity=0.244 Sum_probs=62.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCC----------CCcEEEEeCCCHHHHHHHHH-c-C---cee-ecCchhhh---c
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLP----------PDRICTAVHSNLKRRDAFES-I-G---VKV-LSDNNAVV---E 70 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~----------~~~V~v~~~r~~~~~~~l~~-~-g---~~~-~~~~~~~~---~ 70 (272)
++||+|||+|.||+..+..|.+..... ...|.+. ++++++++++.+ . + +.+ ..+.+++. +
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~Va-D~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVA-SLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEE-CCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 568999999999999999998753211 0137888 999998888776 2 5 233 34544443 5
Q ss_pred cCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 71 ~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
++|+|+.|+|+....++..... ..++-+++.
T Consensus 648 ~~DaVIsalP~~~H~~VAkaAi---eaGkHvv~e 678 (1042)
T PLN02819 648 QVDVVISLLPASCHAVVAKACI---ELKKHLVTA 678 (1042)
T ss_pred CCCEEEECCCchhhHHHHHHHH---HcCCCEEEC
Confidence 7999999999876555554322 334445543
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00024 Score=61.77 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=62.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCHHH--HH----HHHH------cCceeecCchhhhccCCE
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLKR--RD----AFES------IGVKVLSDNNAVVEYSDV 74 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~~~--~~----~l~~------~g~~~~~~~~~~~~~aDi 74 (272)
+||+|||+ |++|++++..|...|... ..++.++ |++++. ++ ++.. ..+.+..+..+.+++||+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~-Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLL-ELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEE-ecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 69999999 999999999999877621 1168888 885322 21 1211 123444455577899999
Q ss_pred EEEee--C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 75 VVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 75 vil~v--~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
||++- | +. . ++++..++..+-.|+.+++-.++++..
T Consensus 82 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~ 133 (322)
T cd01338 82 ALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNT 133 (322)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHH
Confidence 99985 2 21 1 334445565554346677766666543
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00067 Score=58.28 Aligned_cols=106 Identities=18% Similarity=0.289 Sum_probs=71.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCc---eeecCchhhhccC--CEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGV---KVLSDNNAVVEYS--DVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~---~~~~~~~~~~~~a--Divil~v~~~ 82 (272)
...|+||+|+|.|++-.++.|...-- ....|...++|+.+++..+++ .++ ++..+.++++++. |+|.+++|..
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~-s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~ 83 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPE-SNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNP 83 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcc-cCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCc
Confidence 45689999999999999998875321 011666444999999998888 444 5778889998865 9999999866
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHh
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~ 117 (272)
+..+++.-+.. +...+++.-.-.++.++.++.+
T Consensus 84 qH~evv~l~l~--~~K~VL~EKPla~n~~e~~~iv 116 (351)
T KOG2741|consen 84 QHYEVVMLALN--KGKHVLCEKPLAMNVAEAEEIV 116 (351)
T ss_pred cHHHHHHHHHH--cCCcEEecccccCCHHHHHHHH
Confidence 65555544432 2333555433344555555443
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00072 Score=61.74 Aligned_cols=91 Identities=15% Similarity=0.187 Sum_probs=64.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--Ccee-ecCc--h-----hhhccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--GVKV-LSDN--N-----AVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--g~~~-~~~~--~-----~~~~~aDivil~ 78 (272)
..++|-|+|+|.+|..+++.|.+.|+ +|++. ++++++.+.+.+. ++.+ ..|. . .-++++|.|+++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~----~v~vi-d~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY----SVKLI-ERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 46889999999999999999999999 99999 9999988888763 4432 2222 1 124689999988
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
++++...-.+..+...+.+.++++-+
T Consensus 305 ~~~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 305 TNDDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence 88765443333333334455555433
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00016 Score=51.29 Aligned_cols=77 Identities=16% Similarity=0.278 Sum_probs=56.9
Q ss_pred CCeEEEEcccHHHHHHHHHHH-hCCCCCCCcE-EEEeCCCHHHHHHHHH-cCceeecCchhhhcc--CCEEEEeeCcccH
Q 024121 10 SFILGFIGAGKMAESIAKGVA-KSGVLPPDRI-CTAVHSNLKRRDAFES-IGVKVLSDNNAVVEY--SDVVVFSVKPQVV 84 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~-~~g~~~~~~V-~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~--aDivil~v~~~~~ 84 (272)
..++.++|+|++|.+++..+. ..|+ .+ .++ +.++++.- .+ .|+.+..+..++.+. .|+-++|||+..+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~----~i~~~~-dv~~~~~G--~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~a 75 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGF----GIVAVF-DVDPEKIG--KEIGGIPVYGSMDELEEFIEIDIAIITVPAEAA 75 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCE----CEEEEE-EECTTTTT--SEETTEEEESSHHHHHHHCTTSEEEEES-HHHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCC----CCEEEE-EcCCCccC--cEECCEEeeccHHHhhhhhCCCEEEEEcCHHHH
Confidence 458999999999999875544 4566 54 456 88887543 11 477777677777665 9999999999999
Q ss_pred HHHHHHhch
Q 024121 85 KDVAMQIRP 93 (272)
Q Consensus 85 ~~v~~~l~~ 93 (272)
.++..++..
T Consensus 76 ~~~~~~~~~ 84 (96)
T PF02629_consen 76 QEVADELVE 84 (96)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00051 Score=59.75 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=63.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCH--HHHH----HHHH------cCceeecCchhhhccC
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNL--KRRD----AFES------IGVKVLSDNNAVVEYS 72 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~--~~~~----~l~~------~g~~~~~~~~~~~~~a 72 (272)
+..||+|||+ |.+|++++..|...+... ..++.++ |+++ ++++ ++.. .+..+..+..+.+++|
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~-Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~da 80 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLL-DIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDV 80 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEE-ecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCC
Confidence 3469999998 999999999999887521 1168889 8854 2222 1211 1233434455678999
Q ss_pred CEEEEee--C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 73 DVVVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 73 Divil~v--~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
|+||++- | +. . ++++.+++..+-.++.+++-.++++..
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv 134 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANT 134 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH
Confidence 9999985 2 21 1 334445566654337777766666543
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0005 Score=62.01 Aligned_cols=99 Identities=11% Similarity=0.149 Sum_probs=66.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhC-------CCCCCCcEEEEeCCCHHHHHHHH----H------cCceeecCchhhhc
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKS-------GVLPPDRICTAVHSNLKRRDAFE----S------IGVKVLSDNNAVVE 70 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~-------g~~~~~~V~v~~~r~~~~~~~l~----~------~g~~~~~~~~~~~~ 70 (272)
+..||+|||+ |++|++++..|... +. ..++.++ |++.++++-.+ . ..+.+..+..+.++
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i--~~eLvli-D~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPI--ALKLLGS-ERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCc--ccEEEEE-cCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence 3468999999 99999999999887 43 1368888 99887754322 1 12344455567799
Q ss_pred cCCEEEEee--C--ccc------------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 71 YSDVVVFSV--K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 71 ~aDivil~v--~--~~~------------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
+||+||++- | +.. ++++..+|..+..++.++|-.+++...
T Consensus 176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv 231 (444)
T PLN00112 176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNT 231 (444)
T ss_pred cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHH
Confidence 999999986 2 211 334445565544567777767666544
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00067 Score=63.71 Aligned_cols=88 Identities=8% Similarity=0.249 Sum_probs=63.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCc--hhh-----hccCCEEEEeeCcc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NAV-----VEYSDVVVFSVKPQ 82 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~--~~~-----~~~aDivil~v~~~ 82 (272)
-+|-|+|+|++|+.+++.|.+.|+ ++.+. |+|+++.+++++.|..+. .|. .+. ++++|.++++++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~----~vvvI-d~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~ 492 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI----PLVVI-ETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNG 492 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC----CEEEE-ECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCCh
Confidence 468999999999999999999999 99999 999999999988776432 221 222 45899999998776
Q ss_pred cHH-HHHHHhchhcCCCCEEEEE
Q 024121 83 VVK-DVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 83 ~~~-~v~~~l~~~l~~~~~iis~ 104 (272)
.-. .+...+... .++..++.-
T Consensus 493 ~~~~~iv~~~~~~-~~~~~iiar 514 (558)
T PRK10669 493 YEAGEIVASAREK-RPDIEIIAR 514 (558)
T ss_pred HHHHHHHHHHHHH-CCCCeEEEE
Confidence 433 344334333 355555543
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.3e-05 Score=61.61 Aligned_cols=79 Identities=18% Similarity=0.346 Sum_probs=52.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHH--hCCCCCCCcEEEEeCCCHHHHHHHHHcCcee--ecCchhhhc--cCCEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVA--KSGVLPPDRICTAVHSNLKRRDAFESIGVKV--LSDNNAVVE--YSDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~--~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~--~~~~~~~~~--~aDivil~v~~~ 82 (272)
...+|+|||+|.+|..+++.+. ..|+ ++..+.++++++..... .|..+ ..+..+.++ +.|.+++|+|..
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~----~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGF----KIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCc----EEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCch
Confidence 4568999999999999988633 4566 66643388876543211 23322 234455554 499999999988
Q ss_pred cHHHHHHHhc
Q 024121 83 VVKDVAMQIR 92 (272)
Q Consensus 83 ~~~~v~~~l~ 92 (272)
...++...+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 8777766554
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00018 Score=56.68 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=63.0
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-c---------------------
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S--------------------- 63 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~--------------------- 63 (272)
......+|.|+|.|+.|..-+..+...|+ +++++ +.++++.+++...+.... .
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa----~v~~~-d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGA----EVVVP-DERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPE 90 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-----EEEEE-ESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCC
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCC----EEEec-cCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHH
Confidence 33445799999999999999999999999 99999 999988877766443211 1
Q ss_pred ----CchhhhccCCEEEEee--CcccHHHHH-HHhchhcCCCCEEEEEc
Q 024121 64 ----DNNAVVEYSDVVVFSV--KPQVVKDVA-MQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 64 ----~~~~~~~~aDivil~v--~~~~~~~v~-~~l~~~l~~~~~iis~~ 105 (272)
...+.+..+|+||.+. +......++ .+....++++.+|+|++
T Consensus 91 ~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 91 SYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 1234567899999765 444444444 23334467888898864
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00023 Score=64.39 Aligned_cols=67 Identities=24% Similarity=0.233 Sum_probs=46.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~ 80 (272)
..++|.|||.|.+|.++|+.|.+.|+ +|+++ |+++.........+-....+.....+++|++|.+.+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~----~V~g~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~g 68 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGV----YVIGV-DKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPG 68 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCC----EEEEE-eCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCC
Confidence 45789999999999999999999998 99999 987654332111100111233344467999998874
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00027 Score=61.95 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=61.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC--ceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG--VKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g--~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
++||+|+|+ |..|..+.+.|.+.+| +..++... .+..+.-+.+.-.+ +.+.+...+.++++|+||+|+|.....+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~h-p~~~l~~l-~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~ 78 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNF-PVDKLRLL-ASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKK 78 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-CcceEEEE-EccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHH
Confidence 468999987 9999999999999887 43355555 44432222221112 2222212233578999999999888888
Q ss_pred HHHHhchhcCCCCEEEEEcCCC
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~ 108 (272)
+.+++. ..|..|||.++..
T Consensus 79 ~~~~~~---~~G~~VIDlS~~~ 97 (334)
T PRK14874 79 YAPKAA---AAGAVVIDNSSAF 97 (334)
T ss_pred HHHHHH---hCCCEEEECCchh
Confidence 877654 3567889876543
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0002 Score=64.86 Aligned_cols=90 Identities=18% Similarity=0.296 Sum_probs=58.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC--------CCCCCcE-EEEeCCCHHHHHHHHHcCceeecCchhhhc--cCCEEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSG--------VLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVF 77 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g--------~~~~~~V-~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDivil 77 (272)
+.+|||+||+|.+|+.+++.|.++. . ..+| .++ +|++++.+.....+...+.+.++++. +.|+|+.
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~--~i~l~~V~-~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGR--PIEIKKVA-VRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVE 78 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCC--CEEEEEEE-eCChhhccCCCCcccceeCCHHHHhhCCCCCEEEE
Confidence 4579999999999999998876542 1 1133 466 88877654322234456677888875 4799999
Q ss_pred eeCccc-HHHHHHHhchhcCCCCEEEEE
Q 024121 78 SVKPQV-VKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 78 ~v~~~~-~~~v~~~l~~~l~~~~~iis~ 104 (272)
|+++.. ..+.+ ...+..|+-|++.
T Consensus 79 ~tg~~~~~~~~~---~~aL~~GkhVVta 103 (426)
T PRK06349 79 LMGGIEPARELI---LKALEAGKHVVTA 103 (426)
T ss_pred CCCCchHHHHHH---HHHHHCCCeEEEc
Confidence 986532 23333 2334567777753
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00051 Score=59.36 Aligned_cols=96 Identities=17% Similarity=0.229 Sum_probs=61.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH--HHHHHH--cCceee---cC--chhhhccCCEEEEee-
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--RDAFES--IGVKVL---SD--NNAVVEYSDVVVFSV- 79 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~--~~~l~~--~g~~~~---~~--~~~~~~~aDivil~v- 79 (272)
|||+|||+ |++|++++..|...+. ..++.++ |++..+ +-+|.. ....+. .+ +.+.+++||+||++.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~--~~elvLi-Di~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG 77 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPL--VSELALY-DIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAG 77 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--CcEEEEE-ecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCC
Confidence 69999999 9999999999988775 3488999 887111 112222 112332 22 246689999999986
Q ss_pred -C--ccc------------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 80 -K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 80 -~--~~~------------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
| |.. ++++.+.+.++ .|+.+++..+++...
T Consensus 78 ~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvDv 122 (310)
T cd01337 78 VPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVNS 122 (310)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchhh
Confidence 2 221 12333445555 577788888787654
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00095 Score=61.37 Aligned_cols=91 Identities=14% Similarity=0.181 Sum_probs=65.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCc---------------hh------
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN---------------NA------ 67 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~---------------~~------ 67 (272)
..|+.|+|+|.+|..-+..+...|. +|+++ |+++++.+..++.|+... -+. .+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA----~V~a~-D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGA----IVRAF-DTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence 5689999999999998888888897 89999 999999988888887621 110 01
Q ss_pred -----hhccCCEEEEeeCc-c-cHHHH-HHHhchhcCCCCEEEEEc
Q 024121 68 -----VVEYSDVVVFSVKP-Q-VVKDV-AMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 68 -----~~~~aDivil~v~~-~-~~~~v-~~~l~~~l~~~~~iis~~ 105 (272)
.++++|+||.|+.. . ....+ .++....++++.+|+++.
T Consensus 240 ~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 12469999999842 1 11222 244445567888888774
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00079 Score=54.64 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=30.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
...||.|||+|.+|+.++++|...|. .+++++ |++
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv---~~i~lv-D~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV---GTIVIV-DDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC---CeEEEe-cCC
Confidence 34689999999999999999999997 378888 776
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0004 Score=60.49 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=63.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCH--HHHHHHH----H------cCceeecCchhhhccCCE
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNL--KRRDAFE----S------IGVKVLSDNNAVVEYSDV 74 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~--~~~~~l~----~------~g~~~~~~~~~~~~~aDi 74 (272)
.||+|||+ |++|+.++..|...+... ..++.++ |+++ ++++..+ . .+..+..+..+.+++||+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~-Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDi 79 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLL-DIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDV 79 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEE-ecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCE
Confidence 38999999 999999999999877532 1148899 9886 4432111 1 123343455677999999
Q ss_pred EEEee--C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 75 VVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 75 vil~v--~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
||++- | |. . ++++..++.++-+|+.+++-.++++..
T Consensus 80 VVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~ 131 (323)
T cd00704 80 AILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANT 131 (323)
T ss_pred EEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHH
Confidence 99885 2 21 2 334445565553466677766665543
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00067 Score=64.38 Aligned_cols=87 Identities=11% Similarity=0.226 Sum_probs=63.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cC--chh-----hhccCCEEEEeeCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD--NNA-----VVEYSDVVVFSVKP 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~--~~~-----~~~~aDivil~v~~ 81 (272)
..+|-|+|+|++|+.+++.|.+.|+ ++++. |.|+++.+.+++.|..+. .| ..+ -++++|.+++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~----~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d 474 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV----KMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDD 474 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC----CEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCC
Confidence 4679999999999999999999999 99999 999999999988776542 22 122 24589999999977
Q ss_pred ccHH-HHHHHhchhcCCCCEEE
Q 024121 82 QVVK-DVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 82 ~~~~-~v~~~l~~~l~~~~~ii 102 (272)
+... .++..++.+ .|+..++
T Consensus 475 ~~~n~~i~~~ar~~-~p~~~ii 495 (621)
T PRK03562 475 PQTSLQLVELVKEH-FPHLQII 495 (621)
T ss_pred HHHHHHHHHHHHHh-CCCCeEE
Confidence 6543 333444433 3443344
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00087 Score=61.49 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=64.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ecC------------------------
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSD------------------------ 64 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~~------------------------ 64 (272)
..|+.|+|+|.+|...+..+...|. .|+++ ++++++.+.+++.|... .-+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA----~V~v~-d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGA----IVRAF-DTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHH
Confidence 4689999999999999999988898 89999 99999887777666543 111
Q ss_pred --chhhhccCCEEEEee--CcccHHH-HHHHhchhcCCCCEEEEEcC
Q 024121 65 --NNAVVEYSDVVVFSV--KPQVVKD-VAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 65 --~~~~~~~aDivil~v--~~~~~~~-v~~~l~~~l~~~~~iis~~~ 106 (272)
..+.++++|+||.|+ |-..... +.++....+++|.+|||++.
T Consensus 239 ~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 239 ELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence 123467899999998 2111111 12333445678999998753
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00046 Score=61.37 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=61.1
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC-------ceeecCch-hhhccCCEEEEe
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-------VKVLSDNN-AVVEYSDVVVFS 78 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g-------~~~~~~~~-~~~~~aDivil~ 78 (272)
.+.+||+|+|+ |..|..+.+.|.++.+ .+|..+ .++.+.-+.+.... .....+.+ +.++++|+||+|
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~---~el~~l-~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~A 111 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPD---FEITVM-TADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCC 111 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCC---CeEEEE-EChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEc
Confidence 35679999998 9999999998888732 288877 55433322222111 11011222 225789999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
+|.....++...+ ..+..|||+++..
T Consensus 112 lp~~~s~~i~~~~----~~g~~VIDlSs~f 137 (381)
T PLN02968 112 LPHGTTQEIIKAL----PKDLKIVDLSADF 137 (381)
T ss_pred CCHHHHHHHHHHH----hCCCEEEEcCchh
Confidence 9998777777764 2567899887654
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0008 Score=58.96 Aligned_cols=80 Identities=11% Similarity=0.237 Sum_probs=53.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---------------------HHHH----HHHH--cCcee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---------------------KRRD----AFES--IGVKV 61 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---------------------~~~~----~l~~--~g~~~ 61 (272)
...+|.|||+|.+|+.++..|..+|+ ..++++ |++. .|++ .+.+ .++.+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGv---g~i~lv-D~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i 98 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGI---GKLTIA-DRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEI 98 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEE
Confidence 34689999999999999999999997 377888 7763 1222 2222 22322
Q ss_pred --e------cCchhhhccCCEEEEeeCcccHHHHHHHhc
Q 024121 62 --L------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (272)
Q Consensus 62 --~------~~~~~~~~~aDivil~v~~~~~~~v~~~l~ 92 (272)
. .+..+.++++|+||.|+.....+-.+..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~ 137 (338)
T PRK12475 99 VPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLS 137 (338)
T ss_pred EEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 1 123456778899999986666655555544
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00058 Score=60.21 Aligned_cols=92 Identities=15% Similarity=0.239 Sum_probs=58.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-HHH---c-----------CceeecCchhhhccC
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-FES---I-----------GVKVLSDNNAVVEYS 72 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-l~~---~-----------g~~~~~~~~~~~~~a 72 (272)
+++||+|+| +|.+|+.+.+.|.+... .++... .++++...+ +.. . ...+.....+.+.++
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~---~el~~~-~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 77 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPW---FEVTAL-AASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAVDDV 77 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCC---ceEEEE-EcChhhcCCcccccccccccccccccccceEEEeCCHHHhcCC
Confidence 468999998 79999999999887543 266655 444433211 110 0 112222223445789
Q ss_pred CEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCC
Q 024121 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 73 Divil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
|+||.|+|.....++.+.+. ..+..+|+.++.
T Consensus 78 DvVf~a~p~~~s~~~~~~~~---~~G~~vIDls~~ 109 (349)
T PRK08664 78 DIVFSALPSDVAGEVEEEFA---KAGKPVFSNASA 109 (349)
T ss_pred CEEEEeCChhHHHHHHHHHH---HCCCEEEECCch
Confidence 99999999987777766553 356778877653
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00044 Score=59.10 Aligned_cols=105 Identities=14% Similarity=0.209 Sum_probs=73.5
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-cc
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QV 83 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~ 83 (272)
+..-.+++|+||+|++|+-++.++..-|. .+..| |. .+ .+.+...|++.. +.+|++..||+|-+=+|- ..
T Consensus 142 ~el~GKTLgvlG~GrIGseVA~r~k~~gm----~vI~~-dpi~~--~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~ 213 (406)
T KOG0068|consen 142 WELRGKTLGVLGLGRIGSEVAVRAKAMGM----HVIGY-DPITP--MALAEAFGVQLV-SLEEILPKADFITLHVPLTPS 213 (406)
T ss_pred eEEeccEEEEeecccchHHHHHHHHhcCc----eEEee-cCCCc--hHHHHhccceee-eHHHHHhhcCEEEEccCCCcc
Confidence 44455899999999999999999998887 77777 44 33 234555788874 678999999999887773 24
Q ss_pred HHHHHH-HhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 84 VKDVAM-QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 84 ~~~v~~-~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.+.++. +-....++|..||+++-|- +...+-+.+.
T Consensus 214 T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~ 251 (406)
T KOG0068|consen 214 TEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALD 251 (406)
T ss_pred hhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHh
Confidence 444442 3334468899999887543 3344444443
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00077 Score=57.89 Aligned_cols=96 Identities=22% Similarity=0.347 Sum_probs=61.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH----HHHH------cCceeec-CchhhhccCCEEEEee
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES------IGVKVLS-DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~------~g~~~~~-~~~~~~~~aDivil~v 79 (272)
+||+|||+|++|++++..|...+. ..++.++ |+++++++ +|.. ....+.. ...+.++++|+|+++-
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~--~~el~Li-Di~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGL--GSELVLI-DINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccc--cceEEEE-EcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 689999999999999999977765 2389999 99855432 2221 1233333 2245589999999996
Q ss_pred --C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 80 --K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 80 --~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
| |. . ++++..++..+ .++.+++-.++++..
T Consensus 78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~-~~d~ivlVvtNPvD~ 123 (313)
T COG0039 78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKY-APDAIVLVVTNPVDI 123 (313)
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCeEEEEecCcHHH
Confidence 3 32 1 12233344454 356677666676554
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00059 Score=57.97 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=57.3
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-H
Q 024121 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~ 84 (272)
....+++.|||.|. +|.+++..|.+.|. .|+++ ++.. .+..+.+++||+||.+++... +
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga----tVtv~-~s~t--------------~~l~~~~~~ADIVIsAvg~p~~i 215 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA----SVTIL-HSRS--------------KDMASYLKDADVIVSAVGKPGLV 215 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC----eEEEE-eCCc--------------hhHHHHHhhCCEEEECCCCCccc
Confidence 45678999999988 99999999999988 99999 6643 244567899999999996433 2
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
.. ..++++.+|||+.
T Consensus 216 ~~------~~vk~gavVIDvG 230 (286)
T PRK14175 216 TK------DVVKEGAVIIDVG 230 (286)
T ss_pred CH------HHcCCCcEEEEcC
Confidence 21 2357888999873
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00049 Score=59.29 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=61.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCc---eee-cCchhh-hccCCEEEE
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV---KVL-SDNNAV-VEYSDVVVF 77 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~---~~~-~~~~~~-~~~aDivil 77 (272)
+++||+|+|. |--|.-+.+.|..+..+ ++..+ ..+..+=+.+.+ .|. ... .++++. .++||+||+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~v---e~~~~-ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDV---ELILI-SSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCe---EEEEe-echhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 4689999987 99999999988877542 55555 333212122222 111 111 122332 446999999
Q ss_pred eeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 78 ~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
|+|+..-.+++.++. .++..|||+++..-.
T Consensus 77 alPhg~s~~~v~~l~---~~g~~VIDLSadfR~ 106 (349)
T COG0002 77 ALPHGVSAELVPELL---EAGCKVIDLSADFRL 106 (349)
T ss_pred ecCchhHHHHHHHHH---hCCCeEEECCccccc
Confidence 999999888887765 356679998776543
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0028 Score=57.22 Aligned_cols=70 Identities=19% Similarity=0.290 Sum_probs=51.1
Q ss_pred CeEEEEcccHH-HHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHH-------H-cC----ceeecCchhhhccCCEEE
Q 024121 11 FILGFIGAGKM-AESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFE-------S-IG----VKVLSDNNAVVEYSDVVV 76 (272)
Q Consensus 11 ~~IgiIG~G~m-G~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~-------~-~g----~~~~~~~~~~~~~aDivi 76 (272)
|||+|||.|.- .--+...|++.. -++..+|.++ |.++++.+... + .| +..+.|..+++++||+||
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~-Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi 79 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLY-DIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVI 79 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEE-cCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 69999999883 334566666554 2456789999 99998765422 1 23 345778899999999999
Q ss_pred EeeCc
Q 024121 77 FSVKP 81 (272)
Q Consensus 77 l~v~~ 81 (272)
..+..
T Consensus 80 ~~irv 84 (425)
T cd05197 80 NQFRV 84 (425)
T ss_pred Eeeec
Confidence 99843
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00073 Score=58.21 Aligned_cols=91 Identities=20% Similarity=0.287 Sum_probs=60.8
Q ss_pred EEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH----HH------cCceeecCchhhhccCCEEEEee--C--
Q 024121 15 FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF----ES------IGVKVLSDNNAVVEYSDVVVFSV--K-- 80 (272)
Q Consensus 15 iIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l----~~------~g~~~~~~~~~~~~~aDivil~v--~-- 80 (272)
|||+|++|++++..|...+.. .++.++ |++.++++.. .. ..+.+..+..+.+++||+|+++. |
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~--~el~L~-Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk 77 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIA--DEIVLI-DINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQK 77 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCC--CEEEEE-eCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCC
Confidence 689999999999999888763 479999 9987654322 22 12344444556789999999986 2
Q ss_pred ccc------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 81 PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 81 ~~~------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|.. ++++.+.+..+ .|+.+++..+++..
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d 117 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNPVD 117 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCHHH
Confidence 211 33444555555 57777776766543
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00074 Score=59.27 Aligned_cols=96 Identities=11% Similarity=0.177 Sum_probs=61.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEe-CCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAV-HSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
..+||+|+|+ |..|.-+.+.|.+.+| +..++.... .|+..+.-......+.+.....+.+.++|+||+|+|.....+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~h-P~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~ 84 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDF-PYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKK 84 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCC-CcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHH
Confidence 4579999987 9999999999988777 444554331 333222111111112222222344678999999999998888
Q ss_pred HHHHhchhcCCCCEEEEEcCCC
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~ 108 (272)
+..++. ..|..|||.++..
T Consensus 85 ~~~~~~---~~g~~VIDlS~~f 103 (344)
T PLN02383 85 FGPIAV---DKGAVVVDNSSAF 103 (344)
T ss_pred HHHHHH---hCCCEEEECCchh
Confidence 777653 3678899986643
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0032 Score=57.02 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=49.8
Q ss_pred CeEEEEcccHH-HHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeecCchhhhccCCEEE
Q 024121 11 FILGFIGAGKM-AESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVV 76 (272)
Q Consensus 11 ~~IgiIG~G~m-G~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDivi 76 (272)
|||+|||.|.. +-.+...|.+.. -++..+|+++ |.++++.+...+ .| +..+.|..+++++||+||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~-DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi 79 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLY-DIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVF 79 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEE-CCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEE
Confidence 79999999885 223455565542 2455689999 999987654322 23 445778899999999999
Q ss_pred EeeCc
Q 024121 77 FSVKP 81 (272)
Q Consensus 77 l~v~~ 81 (272)
.....
T Consensus 80 ~~irv 84 (437)
T cd05298 80 AQIRV 84 (437)
T ss_pred EEeee
Confidence 99843
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00098 Score=52.74 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=28.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
||.|||+|.+|+.++..|.+.|. .+++++ |.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv---g~i~lv-D~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV---GNLKLV-DFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC---CeEEEE-eCCE
Confidence 68999999999999999999997 258888 7654
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00066 Score=60.75 Aligned_cols=85 Identities=21% Similarity=0.279 Sum_probs=56.8
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----Cceee----cC---chhhhccCCEEEEeeCc
Q 024121 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVKVL----SD---NNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g~~~~----~~---~~~~~~~aDivil~v~~ 81 (272)
|.|+|+|.+|+.+++.|.+.+- ..+|++. +|+.++++++.+. .+... .+ ..++++++|+||-|+++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~--~~~v~va-~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP--FEEVTVA-DRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC--E-EEEEE-ESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCC--CCcEEEE-ECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 7899999999999999998763 1278899 9999998888651 22211 12 34568899999999988
Q ss_pred ccHHHHHHHhchhcCCCCEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis 103 (272)
..-..++.... ..+.-.||
T Consensus 78 ~~~~~v~~~~i---~~g~~yvD 96 (386)
T PF03435_consen 78 FFGEPVARACI---EAGVHYVD 96 (386)
T ss_dssp GGHHHHHHHHH---HHT-EEEE
T ss_pred chhHHHHHHHH---HhCCCeec
Confidence 86555554322 23445665
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00055 Score=59.76 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=62.2
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHHcCceeecCchhh-hccCCEEEEeeCcccH
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESIGVKVLSDNNAV-VEYSDVVVFSVKPQVV 84 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~~g~~~~~~~~~~-~~~aDivil~v~~~~~ 84 (272)
++.+||+|||+ |..|.-+.+.|.+..| +..++.....+ +..+.-.+......+. +.++. ..++|++|+|+|....
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~h-P~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s 79 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQF-PVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGREAS 79 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCC-CceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHHHH
Confidence 46789999998 9999999999988655 44566655222 2111111111122332 33332 2689999999999877
Q ss_pred HHHHHHhchhcCCCCEEEEEcCCC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
.++..++. ..|..|||.++..
T Consensus 80 ~~~~~~~~---~~g~~VIDlS~~f 100 (336)
T PRK08040 80 AAYAEEAT---NAGCLVIDSSGLF 100 (336)
T ss_pred HHHHHHHH---HCCCEEEECChHh
Confidence 77777654 3578899886543
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.002 Score=55.59 Aligned_cols=139 Identities=12% Similarity=0.223 Sum_probs=79.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEe-CCCHHHH-HHHHHcCceeec--CchhhhccCCEEEEeeCcccH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAV-HSNLKRR-DAFESIGVKVLS--DNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~-~r~~~~~-~~l~~~g~~~~~--~~~~~~~~aDivil~v~~~~~ 84 (272)
++||||+|+ |..|+.|.+.|.+..+ +-..+.++. .|+..+. -.+....+.+-. ......+++|++|.|.+.+.-
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f-~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s 79 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHF-PFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVS 79 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCC-CcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHH
Confidence 478999976 9999999999998643 333344441 4443322 222222222222 122345689999999988877
Q ss_pred HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccC-chhhh----cCCceEEEeCCCCC-HHHHHHHHHHh
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPN-TPSAV----GEAATVMSLGGTAT-EEDGELIGKLF 158 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~-~~~~~----~~g~~~~~~~~~~~-~~~~~~v~~ll 158 (272)
+++.+++. ..|.+|||.++.. +.-++.+++ .|. .|... ..| .++ .+++++ ....-.+.+++
T Consensus 80 ~~~~p~~~---~~G~~VIdnsSa~------Rm~~DVPLV--VPeVN~~~l~~~~~rg-~Ii-anpNCst~~l~~aL~PL~ 146 (334)
T COG0136 80 KEVEPKAA---EAGCVVIDNSSAF------RMDPDVPLV--VPEVNPEHLIDYQKRG-FII-ANPNCSTIQLVLALKPLH 146 (334)
T ss_pred HHHHHHHH---HcCCEEEeCCccc------ccCCCCCEe--cCCcCHHHHHhhhhCC-CEE-ECCChHHHHHHHHHHHHH
Confidence 88877765 4678899875543 122233433 221 12211 123 233 344333 34556788888
Q ss_pred hhcC
Q 024121 159 GSVG 162 (272)
Q Consensus 159 ~~~G 162 (272)
+..+
T Consensus 147 ~~~~ 150 (334)
T COG0136 147 DAFG 150 (334)
T ss_pred hhcC
Confidence 8877
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0013 Score=57.09 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=47.7
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC------------------ceeecCchhhhccCC
Q 024121 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG------------------VKVLSDNNAVVEYSD 73 (272)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g------------------~~~~~~~~~~~~~aD 73 (272)
|||+|+|.||...++.+.+... -+|...++.+++....+.. .| +.+..+++++..++|
T Consensus 1 VaInG~GrIGr~varav~~~~d---~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vD 77 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDD---MKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVD 77 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCC---cEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCC
Confidence 6899999999999999875421 1665544877775544443 22 333456788888999
Q ss_pred EEEEeeCcc
Q 024121 74 VVVFSVKPQ 82 (272)
Q Consensus 74 ivil~v~~~ 82 (272)
+|+.|+|..
T Consensus 78 iVve~Tp~~ 86 (333)
T TIGR01546 78 IVVDATPGG 86 (333)
T ss_pred EEEECCCCC
Confidence 999999754
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00084 Score=57.92 Aligned_cols=83 Identities=10% Similarity=0.153 Sum_probs=57.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
+++||+|||+ |..|.-+.+.|.++.++ ++.....+... .. .+.++...++|++|+|+|.....++
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~---~l~~~~s~~~~--------~~---~~~~~~~~~~DvvFlalp~~~s~~~ 66 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDI---ELLSIPEAKRK--------DA---AARRELLNAADVAILCLPDDAAREA 66 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCe---EEEEEecCCCC--------cc---cCchhhhcCCCEEEECCCHHHHHHH
Confidence 3579999996 99999999988887542 44333122211 11 2334556789999999999988888
Q ss_pred HHHhchhcCCCCEEEEEcCCC
Q 024121 88 AMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~ 108 (272)
..++. ..+..|||.++..
T Consensus 67 ~~~~~---~~g~~VIDlSadf 84 (313)
T PRK11863 67 VALID---NPATRVIDASTAH 84 (313)
T ss_pred HHHHH---hCCCEEEECChhh
Confidence 77764 3577899886543
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.001 Score=57.84 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=44.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEe
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~ 78 (272)
...++|.|||+|.||...+++|.+.|. .+|++. ||+.+.. .+..... ...+...++|+||.|
T Consensus 172 l~~k~vLvIGaGem~~l~a~~L~~~g~---~~i~v~-nRt~~~~-~~~~~~~----~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 172 SKKASLLFIGYSEINRKVAYYLQRQGY---SRITFC-SRQQLTL-PYRTVVR----EELSFQDPYDVIFFG 233 (338)
T ss_pred ccCCEEEEEcccHHHHHHHHHHHHcCC---CEEEEE-cCCcccc-chhhhhh----hhhhcccCCCEEEEc
Confidence 467899999999999999999999996 279999 9997531 1111000 111334689999987
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=57.92 Aligned_cols=96 Identities=14% Similarity=0.195 Sum_probs=60.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
.+||||||+ |..|.-|.+.|.++..++..++.....+ +..+.-.+....+.+.....+...+.|++|+|+|.....++
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~~~~Divf~a~~~~~s~~~ 84 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQF 84 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHhcCCCEEEECCChHHHHHH
Confidence 379999998 9999999999886444343346544122 22221111111223322222345789999999999888887
Q ss_pred HHHhchhcCCCCEEEEEcCCC
Q 024121 88 AMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~ 108 (272)
...+. ..|..|||.++..
T Consensus 85 ~~~~~---~~G~~VID~Ss~f 102 (347)
T PRK06728 85 VNQAV---SSGAIVIDNTSEY 102 (347)
T ss_pred HHHHH---HCCCEEEECchhh
Confidence 77653 3678899886543
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.001 Score=56.46 Aligned_cols=74 Identities=20% Similarity=0.269 Sum_probs=57.4
Q ss_pred CCCCCeEEEEcccHH-HHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 7 PAESFILGFIGAGKM-AESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~m-G~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
....+++.|||.|.+ |.+++.-|.+.|. .|+++ ++.. .+..+.+++||+||.+++...+
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~a----tVt~~-hs~t--------------~~l~~~~~~ADIVV~avG~~~~- 214 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGA----TVTIC-HSKT--------------RDLAAHTRQADIVVAAVGKRNV- 214 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEe-cCCC--------------CCHHHHhhhCCEEEEcCCCcCc-
Confidence 446789999999988 9999999999988 99988 6432 2455778999999999974332
Q ss_pred HHHHHhchhcCCCCEEEEE
Q 024121 86 DVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~ 104 (272)
+.. ..++++.++|++
T Consensus 215 --i~~--~~ik~gavVIDV 229 (285)
T PRK14189 215 --LTA--DMVKPGATVIDV 229 (285)
T ss_pred --cCH--HHcCCCCEEEEc
Confidence 221 446899999986
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0019 Score=56.11 Aligned_cols=95 Identities=11% Similarity=0.163 Sum_probs=60.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHH--cCceee--cCc---hhhhccCCEEEEee-
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFES--IGVKVL--SDN---NAVVEYSDVVVFSV- 79 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~--~~l~~--~g~~~~--~~~---~~~~~~aDivil~v- 79 (272)
.||+|||+ |++|+.++..|...+.. .++.++ |+++... .++.. ....+. .+. .+.++++|+||++-
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~--~el~L~-Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLV--SELHLY-DIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC--CEEEEE-ecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 69999999 99999999999877652 379999 9876211 12222 111221 122 57789999999986
Q ss_pred -Cc--c-cHHH-----------HHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 -KP--Q-VVKD-----------VAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 -~~--~-~~~~-----------v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|. . .-.+ +.+.+..+ .|+.+++-.+++..
T Consensus 96 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPvD 139 (323)
T PLN00106 96 VPRKPGMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPVN 139 (323)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCcc
Confidence 22 1 2222 23344444 47778887777775
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0017 Score=56.63 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=60.6
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCC--CC-cEEEEeCCCHHH--HHH----HHH------cCceeecCchhhhccCCEE
Q 024121 12 ILGFIGA-GKMAESIAKGVAKSGVLP--PD-RICTAVHSNLKR--RDA----FES------IGVKVLSDNNAVVEYSDVV 75 (272)
Q Consensus 12 ~IgiIG~-G~mG~~la~~l~~~g~~~--~~-~V~v~~~r~~~~--~~~----l~~------~g~~~~~~~~~~~~~aDiv 75 (272)
||+|||+ |++|+.++..|...+... .. ++.++ |+++.. ++. +.. .++....+..+.+++||+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~Li-D~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLL-DIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEE-ecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEE
Confidence 6999999 999999999999877632 21 58899 986432 211 111 1122222435678999999
Q ss_pred EEee--Cc--cc------------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 76 VFSV--KP--QV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 76 il~v--~~--~~------------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
|++- |. .. ++++.+++.++-+|+.+++-.++++..
T Consensus 80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv 130 (324)
T TIGR01758 80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANT 130 (324)
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH
Confidence 9985 32 22 233444555553466677766666544
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0022 Score=55.66 Aligned_cols=86 Identities=16% Similarity=0.278 Sum_probs=60.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-c-Cchhh---h-ccCCEEEEeeCccc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S-DNNAV---V-EYSDVVVFSVKPQV 83 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~-~~~~~---~-~~aDivil~v~~~~ 83 (272)
..+|+|+|+|-+|..-.+.....|. +|+++ +|++++.+.+++.|+... . +..+. + +.+|+|+.++++..
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga----~Via~-~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~~~~ 241 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGA----EVIAI-TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVGPAT 241 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC----eEEEE-eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCChhh
Confidence 4689999999999866665556887 99999 999999998888876432 1 11222 2 23999999999556
Q ss_pred HHHHHHHhchhcCCCCEEEEE
Q 024121 84 VKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~ 104 (272)
+...+..+ +++..++-.
T Consensus 242 ~~~~l~~l----~~~G~~v~v 258 (339)
T COG1064 242 LEPSLKAL----RRGGTLVLV 258 (339)
T ss_pred HHHHHHHH----hcCCEEEEE
Confidence 66665544 455555533
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0013 Score=56.90 Aligned_cols=95 Identities=15% Similarity=0.219 Sum_probs=61.7
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH--HHHHHH--cCceeec---C--chhhhccCCEEEEee--
Q 024121 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--RDAFES--IGVKVLS---D--NNAVVEYSDVVVFSV-- 79 (272)
Q Consensus 12 ~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~--~~~l~~--~g~~~~~---~--~~~~~~~aDivil~v-- 79 (272)
||+|||+ |++|++++..|...++. .++.++ |+++.. +-++.. ....+.. + ..+.+++||+||++.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~--~elvL~-Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~ 77 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYV--SELSLY-DIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGV 77 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCC--cEEEEe-cCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCC
Confidence 7999999 99999999999887753 478999 987621 112222 1123321 2 256789999999986
Q ss_pred C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 80 K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 80 ~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
| +. . ++++.+.+..+ .|+.+++..+++...
T Consensus 78 ~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPvDv 121 (312)
T TIGR01772 78 PRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPVNS 121 (312)
T ss_pred CCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCchhh
Confidence 2 11 1 12333445555 578888888887753
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0013 Score=54.30 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=50.1
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHHcCceee-------cCchhhhccCCEEEEeeC
Q 024121 13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESIGVKVL-------SDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 13 IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~~g~~~~-------~~~~~~~~~aDivil~v~ 80 (272)
|.|+|. |.+|+.++..|.+.++ +|.+. .|++. ..+.+...|+.+. .+..++++++|.||++++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~----~V~~l-~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF----SVRAL-VRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG----CEEEE-ESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhCCC----CcEEE-EeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence 688986 9999999999999998 99998 78753 4566777787643 123456889999999998
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0011 Score=56.18 Aligned_cols=91 Identities=19% Similarity=0.258 Sum_probs=68.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCce--ee----cCchhhhccCCEEEEee--C
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK--VL----SDNNAVVEYSDVVVFSV--K 80 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~--~~----~~~~~~~~~aDivil~v--~ 80 (272)
.-||.|||.|-.|.-=++-...-|- +|++. ++|.++++.+.. ++.+ .. .+.++.+.++|+||=+| |
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA----~Vtil-d~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA----DVTIL-DLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC----eeEEE-ecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 3579999999999988887777777 99999 999999988877 4443 22 23467788999999887 4
Q ss_pred cccHHHH-HHHhchhcCCCCEEEEEc
Q 024121 81 PQVVKDV-AMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 81 ~~~~~~v-~~~l~~~l~~~~~iis~~ 105 (272)
-.....+ .+++..+++|+.+|||..
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEEEE
Confidence 4443333 345566678999999864
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0016 Score=55.31 Aligned_cols=74 Identities=15% Similarity=0.270 Sum_probs=58.1
Q ss_pred CCCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-ccc
Q 024121 6 IPAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQV 83 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~ 83 (272)
.....+++.|||-|. .|.+++.-|.+.|. .|+++ ++.. .+..+.+++||+||.++. |..
T Consensus 155 i~l~Gk~vvViGrs~iVG~Pla~lL~~~~a----tVtv~-hs~T--------------~~l~~~~~~ADIvi~avG~p~~ 215 (285)
T PRK10792 155 IDTYGLNAVVVGASNIVGRPMSLELLLAGC----TVTVC-HRFT--------------KNLRHHVRNADLLVVAVGKPGF 215 (285)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCC----eEEEE-ECCC--------------CCHHHHHhhCCEEEEcCCCccc
Confidence 345678999999998 99999999999888 99999 6542 245677899999999993 444
Q ss_pred HHHHHHHhchhcCCCCEEEEE
Q 024121 84 VKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~ 104 (272)
+.. ..++++.+||++
T Consensus 216 v~~------~~vk~gavVIDv 230 (285)
T PRK10792 216 IPG------EWIKPGAIVIDV 230 (285)
T ss_pred ccH------HHcCCCcEEEEc
Confidence 332 346799999986
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0012 Score=57.33 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=50.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee----c---CchhhhccCCEEEEeeC
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----S---DNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~----~---~~~~~~~~aDivil~v~ 80 (272)
|||.|+|. |.+|+.+++.|++.|| +|.+. .|++++...+...++++. . +..++++++|+||-++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~----~V~~l-~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY----QVRCL-VRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC----eEEEE-EcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 68999984 9999999999999999 99999 898876655554565432 1 23456788999998763
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.023 Score=50.07 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=96.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----c-C-ce-------------------eecC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----I-G-VK-------------------VLSD 64 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~-g-~~-------------------~~~~ 64 (272)
|.+|-|+|+|..+--+|..+.+.+. ..|.+. +|...+.+.+.+ . + +. +..+
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~---~~vGi~-~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~ 76 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGN---CRVGIV-GRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQD 76 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccC---ceeeee-cCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcC
Confidence 3579999999999999999887654 268888 887666554432 1 1 00 1235
Q ss_pred chhhhccCCEEEEeeCcccHHHHHHHhchh-cCCCCEEEEEcCCCCHHHH-HHHhC----CCCEEEEcc----------C
Q 024121 65 NNAVVEYSDVVVFSVKPQVVKDVAMQIRPL-LSRKKLLVSVAAGVKLKDL-QEWTG----HSRFIRVMP----------N 128 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~~~~~v~~~l~~~-l~~~~~iis~~~~~~~~~l-~~~~~----~~~~~~~~p----------~ 128 (272)
.+++..+=|.+|+|||.++..+|+++|.+. ++.=+.+|=++..+....+ +..+. +..++.+.. .
T Consensus 77 ~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~ 156 (429)
T PF10100_consen 77 YEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGE 156 (429)
T ss_pred HHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceeccCC
Confidence 567777899999999999999999987542 4444455556666665433 33332 334444321 1
Q ss_pred chhhh---cCCceEEEeCCCCCHHHHHHHHHHhhhcCC-eEEcC
Q 024121 129 TPSAV---GEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRAD 168 (272)
Q Consensus 129 ~~~~~---~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~-~~~~~ 168 (272)
.|..+ +-..-+.....+.+....+++..+++.+|- ...++
T Consensus 157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~ 200 (429)
T PF10100_consen 157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMD 200 (429)
T ss_pred CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeC
Confidence 11111 000112222334566678999999999995 45554
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.002 Score=56.69 Aligned_cols=92 Identities=22% Similarity=0.273 Sum_probs=54.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC--------CCCCCCcEE-EEeCC----------CHHHHHHHHH-cCc-e------ee
Q 024121 10 SFILGFIGAGKMAESIAKGVAKS--------GVLPPDRIC-TAVHS----------NLKRRDAFES-IGV-K------VL 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~--------g~~~~~~V~-v~~~r----------~~~~~~~l~~-~g~-~------~~ 62 (272)
.+||+|+|+|.||+.+++.|.+. |. ..+|. ++ ++ +.+++..+.+ .+. . ..
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~--~~~vvai~-d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~ 78 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGL--DLKVVAIA-DSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGE 78 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC--CEEEEEEE-eCCCcccCcCCCCHHHHHHHHhccCCcccCcccccc
Confidence 46899999999999999998765 21 01443 45 64 3334433333 221 1 12
Q ss_pred cCchhhhc--cCCEEEEeeCcccH--HHHHHHhchhcCCCCEEEEE
Q 024121 63 SDNNAVVE--YSDVVVFSVKPQVV--KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 63 ~~~~~~~~--~aDivil~v~~~~~--~~v~~~l~~~l~~~~~iis~ 104 (272)
.+..+++. +.|+|+.|+|+... +...+-+...+..|+.||+.
T Consensus 79 ~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta 124 (341)
T PRK06270 79 ISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS 124 (341)
T ss_pred CCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC
Confidence 35666664 68999999986432 11122223345567777753
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00054 Score=53.72 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=53.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHH--hCCCCCCCcE-EEEeCCCHHHHHHHHHcCceee--cCchhhhc--cCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVA--KSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVL--SDNNAVVE--YSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~--~~g~~~~~~V-~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~--~aDivil~v~~ 81 (272)
++.++.+||+|++|.+++..-. ++|+ ++ .++ |.++++.-.-. .++.+. ++.+..++ +.|+.++|||.
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~----~iv~~F-Dv~~~~VG~~~-~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGM----KIVAAF-DVDPDKVGTKI-GDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCc----eEEEEe-cCCHHHhCccc-CCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 3457999999999999986533 4555 55 467 98887542211 233332 33444455 78999999999
Q ss_pred ccHHHHHHHhch
Q 024121 82 QVVKDVAMQIRP 93 (272)
Q Consensus 82 ~~~~~v~~~l~~ 93 (272)
....++.+.|..
T Consensus 157 ~~AQ~vad~Lv~ 168 (211)
T COG2344 157 EHAQEVADRLVK 168 (211)
T ss_pred HHHHHHHHHHHH
Confidence 988888877653
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0013 Score=57.38 Aligned_cols=90 Identities=16% Similarity=0.259 Sum_probs=62.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-cC-ceeecCchhhhccCCEEEEeeCc-c
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IG-VKVLSDNNAVVEYSDVVVFSVKP-Q 82 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g-~~~~~~~~~~~~~aDivil~v~~-~ 82 (272)
...++|.|+|+ |.||+.+++.|.+. |. .+++++ +|+.++++.+.+ .+ ..+ .+..+.+.++|+|+.++.. .
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv---~~lilv-~R~~~rl~~La~el~~~~i-~~l~~~l~~aDiVv~~ts~~~ 227 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGV---AELLLV-ARQQERLQELQAELGGGKI-LSLEEALPEADIVVWVASMPK 227 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCC---CEEEEE-cCCHHHHHHHHHHhccccH-HhHHHHHccCCEEEECCcCCc
Confidence 45689999998 89999999999854 42 289999 999888887765 22 222 2456778899999998843 2
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcC
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
.+ ++.. ..++++.+++|..-
T Consensus 228 ~~--~I~~--~~l~~~~~viDiAv 247 (340)
T PRK14982 228 GV--EIDP--ETLKKPCLMIDGGY 247 (340)
T ss_pred CC--cCCH--HHhCCCeEEEEecC
Confidence 21 0111 12356778888743
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0017 Score=55.26 Aligned_cols=91 Identities=18% Similarity=0.260 Sum_probs=63.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c---Cc--eeecC-chhhhccCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I---GV--KVLSD-NNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~---g~--~~~~~-~~~~~~~aDivil~v~~ 81 (272)
..+++.|+|+|-.+.+++..|++.|. .+|+++ ||+.+++++|++ . +. ..... ..+...++|+||=|+|.
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~---~~i~V~-NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~ 200 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGA---KRITVV-NRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPV 200 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCC
Confidence 45789999999999999999999995 289999 999999999887 2 21 11111 11212269999999985
Q ss_pred ccHHH----HHHHhchhcCCCCEEEEEc
Q 024121 82 QVVKD----VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 82 ~~~~~----v~~~l~~~l~~~~~iis~~ 105 (272)
.-... .+. ...++++.++.++.
T Consensus 201 Gm~~~~~~~~~~--~~~l~~~~~v~D~v 226 (283)
T COG0169 201 GMAGPEGDSPVP--AELLPKGAIVYDVV 226 (283)
T ss_pred CCCCCCCCCCCc--HHhcCcCCEEEEec
Confidence 43211 222 23466777877764
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0029 Score=47.73 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=28.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r 46 (272)
..||.|+|+|.+|+.++.+|...|. .+++++ |.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv---~~i~lv-D~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV---GKITLV-DD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT---SEEEEE-ES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC---Cceeec-CC
Confidence 4689999999999999999999997 367777 54
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0027 Score=54.21 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
....+++.|||.|. .|.+++..|.+.|. .|+++ +|... +..+.++++|+||.|++...
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga----tVtv~-~~~t~--------------~L~~~~~~aDIvI~AtG~~~-- 214 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA----TVTIC-HSRTQ--------------NLPELVKQADIIVGAVGKPE-- 214 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC----EEEEE-eCCch--------------hHHHHhccCCEEEEccCCCC--
Confidence 45668999999998 99999999999988 99999 77322 23445689999999994222
Q ss_pred HHHHHhchhcCCCCEEEEE
Q 024121 86 DVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~ 104 (272)
.+.. ..++++.+++|+
T Consensus 215 -~v~~--~~lk~gavViDv 230 (283)
T PRK14192 215 -LIKK--DWIKQGAVVVDA 230 (283)
T ss_pred -cCCH--HHcCCCCEEEEE
Confidence 1211 236788888886
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0024 Score=55.69 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=60.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCHH--HHHH----HHH------cCceeecCchhhhccCCE
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLK--RRDA----FES------IGVKVLSDNNAVVEYSDV 74 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~~--~~~~----l~~------~g~~~~~~~~~~~~~aDi 74 (272)
.||+|+|+ |.+|+.++..|...+... ..+|.++ |+++. +++. +.. ..+....+..+.+++||+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~-D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLL-DIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEE-EcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 58999999 999999999999866421 1379999 88652 1211 110 012233444577899999
Q ss_pred EEEee--C--ccc------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 75 VVFSV--K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 75 vil~v--~--~~~------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
||++- | +.. ++++...+..+..++.+++-.++++.
T Consensus 82 VI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD 132 (325)
T cd01336 82 AILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPAN 132 (325)
T ss_pred EEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHH
Confidence 99885 2 111 12333455555445666666666544
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0041 Score=50.87 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=30.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
...+|.|||+|.+|+.++..|...|. .+++++ |.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gv---g~i~lv-D~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGV---GNLKLV-DFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCC---CeEEEE-eCC
Confidence 34689999999999999999999997 368888 766
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0023 Score=45.93 Aligned_cols=85 Identities=12% Similarity=0.196 Sum_probs=55.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCchhhhccCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
.+.++|.|||.|.+|..=++.|++.|. +|+++ .+..+..+ ..++.. ....+.++++|+||.|+.+..+.+
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA----~v~vi-s~~~~~~~----~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~ 75 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGA----KVTVI-SPEIEFSE----GLIQLIRREFEEDLDGADLVFAATDDPELNE 75 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTB----EEEEE-ESSEHHHH----TSCEEEESS-GGGCTTESEEEE-SS-HHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCchhhhh----hHHHHHhhhHHHHHhhheEEEecCCCHHHHH
Confidence 356899999999999999999999998 99999 77641111 222221 222355788999999998877665
Q ss_pred HHHHhchhcCCCCEEEEE
Q 024121 87 VAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~ 104 (272)
-+.+... ...++++.
T Consensus 76 ~i~~~a~---~~~i~vn~ 90 (103)
T PF13241_consen 76 AIYADAR---ARGILVNV 90 (103)
T ss_dssp HHHHHHH---HTTSEEEE
T ss_pred HHHHHHh---hCCEEEEE
Confidence 5544332 22355554
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0027 Score=52.43 Aligned_cols=89 Identities=17% Similarity=0.283 Sum_probs=58.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCC----------CHHHHHHHHH-cC-------ceeecCchh
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHS----------NLKRRDAFES-IG-------VKVLSDNNA 67 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r----------~~~~~~~l~~-~g-------~~~~~~~~~ 67 (272)
.+..+||+|.|+|++|+.+++.|.+.|. +|+ +. |. +.+.+.++++ .| .... +..+
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~----~vv~v~-D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~ 101 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGA----KVVAVS-DSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEE 101 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEE-CCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCcc
Confidence 3467899999999999999999999998 777 55 76 6666655544 22 1111 2233
Q ss_pred hh-ccCCEEEEeeCcccH-HHHHHHhchhcCCCCEEEEEcC
Q 024121 68 VV-EYSDVVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 68 ~~-~~aDivil~v~~~~~-~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+. .+||+++-|.+.+.+ .+.++++. -++|+...+
T Consensus 102 i~~~~~Dvlip~a~~~~i~~~~~~~l~-----a~~I~egAN 137 (227)
T cd01076 102 LLELDCDILIPAALENQITADNADRIK-----AKIIVEAAN 137 (227)
T ss_pred ceeecccEEEecCccCccCHHHHhhce-----eeEEEeCCC
Confidence 32 379999999876654 34444442 346665444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0044 Score=47.25 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=28.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
||.|||+|.+|+.++++|...|+ .+++++ |.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv---~~i~iv-D~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV---GKITLI-DFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CEEEEE-cCC
Confidence 58999999999999999999997 368888 765
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.012 Score=44.32 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHhhhcCCe-EEcCcccchhHHH-ch-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc
Q 024121 147 TEEDGELIGKLFGSVGKI-WRADEKLFDAITG-LS-GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKS 223 (272)
Q Consensus 147 ~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~ 223 (272)
+++..+.++.+++.+|.. +.+++++...+.+ .+ ..+|...+...-.+...+.|++.+++.+++.+.+.++.+.+.+.
T Consensus 9 d~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~PLi~~t~~n~~~~ 88 (132)
T PF10728_consen 9 DEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLPLIRETLENILQL 88 (132)
T ss_dssp SHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 788999999999999964 7787776544433 33 56666666655566678999999999999999999999888753
Q ss_pred CCCHHHHHHhcCCCc-chHHHHHHHHHh
Q 024121 224 GKHPGQLKDDVASPG-GTTIAGIHELEK 250 (272)
Q Consensus 224 ~~~~~~l~~~~~~~~-g~t~~~l~~l~~ 250 (272)
+ ....+..-+.-.. ++....++.|++
T Consensus 89 g-~~~alTGP~~RgD~~Tv~kHl~~L~~ 115 (132)
T PF10728_consen 89 G-PADALTGPAARGDIGTVAKHLAALDD 115 (132)
T ss_dssp --HHHH--SCCHCTHHHHHHHHHHHCCC
T ss_pred C-chhccCCCcccCCHHHHHHHHHHHhc
Confidence 2 1233333332222 345566777665
|
; PDB: 3D1L_A 2I76_A 3DFU_A. |
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.011 Score=53.45 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=48.1
Q ss_pred CeEEEEcccHHHH-HHHHHHHhC-CCCCCCcEEEEeCCC-HHHHHHHH-------H-cC----ceeecCchhhhccCCEE
Q 024121 11 FILGFIGAGKMAE-SIAKGVAKS-GVLPPDRICTAVHSN-LKRRDAFE-------S-IG----VKVLSDNNAVVEYSDVV 75 (272)
Q Consensus 11 ~~IgiIG~G~mG~-~la~~l~~~-g~~~~~~V~v~~~r~-~~~~~~l~-------~-~g----~~~~~~~~~~~~~aDiv 75 (272)
|||+|||.|..-+ .+...|++. .-++..+|.++ |.+ +++++... + .| +..+.|..+++++||+|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~-Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfV 79 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLV-DIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFV 79 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEe-cCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence 6999999998643 345555553 22355689999 999 77764321 1 23 34567889999999999
Q ss_pred EEee
Q 024121 76 VFSV 79 (272)
Q Consensus 76 il~v 79 (272)
|.+.
T Consensus 80 i~~~ 83 (419)
T cd05296 80 FTQI 83 (419)
T ss_pred EEEE
Confidence 9997
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0059 Score=49.64 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=59.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcC-ceeec-C-chhhhccCCEEEEeeCcccH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-VKVLS-D-NNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g-~~~~~-~-~~~~~~~aDivil~v~~~~~ 84 (272)
+.++|.|||.|.+|..-++.|++.|. +|+++ +.+. +..+.+.+.| +.... + ..+.+.++|+||.|+.+..+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga----~VtVv-sp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~l 82 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA----QLRVI-AEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEEL 82 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC----EEEEE-cCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHH
Confidence 45799999999999999999999998 99999 7754 3445555543 43321 1 13447899999999877655
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
..-+.... +...+.|++.
T Consensus 83 n~~i~~~a---~~~~ilvn~~ 100 (205)
T TIGR01470 83 NRRVAHAA---RARGVPVNVV 100 (205)
T ss_pred HHHHHHHH---HHcCCEEEEC
Confidence 44333222 2234566553
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0025 Score=46.05 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH---HcCceeecCchhhhccCCEEEEeeCcccHHHH-HHHhchhcC
Q 024121 21 MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE---SIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV-AMQIRPLLS 96 (272)
Q Consensus 21 mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~---~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v-~~~l~~~l~ 96 (272)
-+-.+++.|.+.|. +|.+| |..-....... ..++...++..+.++++|.|+++++...+.++ .+.+...++
T Consensus 18 p~~~l~~~L~~~g~----~V~~~-DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~~ 92 (106)
T PF03720_consen 18 PALELIEELKERGA----EVSVY-DPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFRELDWEEIAKLMR 92 (106)
T ss_dssp HHHHHHHHHHHTT-----EEEEE--TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGGCCGHHHHHHHSC
T ss_pred HHHHHHHHHHHCCC----EEEEE-CCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHhccCHHHHHHhcC
Confidence 35568899999999 99999 88654433333 25788888888999999999999988877652 345555566
Q ss_pred CCCEEEEEcC
Q 024121 97 RKKLLVSVAA 106 (272)
Q Consensus 97 ~~~~iis~~~ 106 (272)
++.+|+++-+
T Consensus 93 ~~~~iiD~~~ 102 (106)
T PF03720_consen 93 KPPVIIDGRN 102 (106)
T ss_dssp SSEEEEESSS
T ss_pred CCCEEEECcc
Confidence 7788888644
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0013 Score=57.68 Aligned_cols=90 Identities=18% Similarity=0.237 Sum_probs=58.6
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc--eeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 12 ~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
||+|||+ |..|..+.+.|.+.+| +..++.+. .+..+.-+.+.-.|. .+.+-..+.+.++|++|+|++.....++.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~h-p~~~l~~~-as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~~a 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNF-PIDKLVLL-ASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVSKEFA 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCC-ChhhEEEE-eccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHHHHHH
Confidence 6899995 9999999999999887 44455544 443322222221232 22211223457899999999998877777
Q ss_pred HHhchhcCCCCEEEEEcC
Q 024121 89 MQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~ 106 (272)
..+. ..|..|||.++
T Consensus 79 ~~~~---~~G~~VID~ss 93 (339)
T TIGR01296 79 PKAA---KCGAIVIDNTS 93 (339)
T ss_pred HHHH---HCCCEEEECCH
Confidence 6653 35668888755
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0034 Score=57.56 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=52.8
Q ss_pred CCCCCCCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceee-cCchhhhccCCEEEEee
Q 024121 5 PIPAESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVL-SDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~-~~~~~~~~~aDivil~v 79 (272)
+...+.++|.|||.|..|.+ +|+.|.+.|+ +|+++ |.++. ..+++.+.|+.+. ....+.+.++|+||++-
T Consensus 2 ~~~~~~~~v~viG~G~sG~s~~a~~L~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 2 PELRRIKRIHFVGIGGIGMSGLAEVLLNLGY----KVSGS-DLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred CCcCCCCEEEEEEEchhhHHHHHHHHHhCCC----eEEEE-CCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECC
Confidence 34456679999999999999 8999999999 99999 87542 3445666787664 22344567899998874
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0033 Score=57.62 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=49.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~ 78 (272)
+.+||.|||.|..|.+.++.|.+.|+ +|+++ |+.+.....+.+.|+.......+-+.++|+||.+
T Consensus 8 ~~~~i~viG~G~~G~~~a~~l~~~G~----~v~~~-D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 8 AGKTVAVFGLGGSGLATARALVAGGA----EVIAW-DDNPASRAKAAAAGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCC----EEEEE-CCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence 45789999999999999999999999 99999 9775544455556776533223335689998865
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0043 Score=56.61 Aligned_cols=92 Identities=24% Similarity=0.317 Sum_probs=67.8
Q ss_pred CCCCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc
Q 024121 8 AESFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~ 83 (272)
.+.++|+|||. |++|..+.++|.+.|| ..+|+.. |+.... -.|+.+..+..++-...|++++++|++.
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf--~g~v~~V-np~~~~-----i~G~~~~~sl~~lp~~~Dlavi~vp~~~ 76 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGY--KGKIYPV-NPKAGE-----ILGVKAYPSVLEIPDPVDLAVIVVPAKY 76 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCC--CCcEEEE-CCCCCc-----cCCccccCCHHHCCCCCCEEEEecCHHH
Confidence 34578999999 8999999999999998 1256666 554321 1577788888887778999999999999
Q ss_pred HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
+.++++++... .-..+|| +++|++
T Consensus 77 ~~~~l~e~~~~-gv~~~vi-~s~gf~ 100 (447)
T TIGR02717 77 VPQVVEECGEK-GVKGAVV-ITAGFK 100 (447)
T ss_pred HHHHHHHHHhc-CCCEEEE-ECCCcc
Confidence 99999887653 2333433 455553
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0036 Score=51.31 Aligned_cols=91 Identities=15% Similarity=0.207 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH----------HHHHHHHHc-Cceee-----cCchhhh-
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL----------KRRDAFESI-GVKVL-----SDNNAVV- 69 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~----------~~~~~l~~~-g~~~~-----~~~~~~~- 69 (272)
.++.+||+|.|+|++|+.+++.|.+.|. ..|.+. |.+. +..+...+. ++... .+..++.
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~---~vV~vs-D~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGG---KVLAVS-DPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG 95 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEE-cCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccccee
Confidence 4567899999999999999999999987 144566 7776 555544442 22211 1122332
Q ss_pred ccCCEEEEeeCcccHH-HHHHHhchhcCCCCEEEEEcC
Q 024121 70 EYSDVVVFSVKPQVVK-DVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 70 ~~aDivil~v~~~~~~-~v~~~l~~~l~~~~~iis~~~ 106 (272)
.+||+++.|.+.+.+. +...++ .-++|+.-.+
T Consensus 96 ~~~DVlipaA~~~~i~~~~a~~l-----~a~~V~e~AN 128 (217)
T cd05211 96 LDVDIFAPCALGNVIDLENAKKL-----KAKVVAEGAN 128 (217)
T ss_pred ccccEEeeccccCccChhhHhhc-----CccEEEeCCC
Confidence 3899999998766543 333333 2456665544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0035 Score=57.71 Aligned_cols=69 Identities=26% Similarity=0.289 Sum_probs=52.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH-HHcCceeec--CchhhhccCCEEEEe--eCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLS--DNNAVVEYSDVVVFS--VKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-~~~g~~~~~--~~~~~~~~aDivil~--v~~~ 82 (272)
..+||.|+|+|..|.++++.|.+.|+ +|+++ |++.....++ .+.|+.+.. +..+.+.++|+||.+ +|++
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~ 87 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGC----DVVVA-DDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPD 87 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCC
Confidence 45789999999999999999999999 99999 9877655443 336776643 233446789999887 3544
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0069 Score=50.39 Aligned_cols=100 Identities=19% Similarity=0.214 Sum_probs=66.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHH-----HHHHH---cCceeecCchhhhccCCEEEEe
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRR-----DAFES---IGVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~-----~~l~~---~g~~~~~~~~~~~~~aDivil~ 78 (272)
++|||+|.|+ |+||+.+.+.+.+...+ ++. .+ +|.+... -++.. .|+.+.++......++|++|=-
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~---~L~aa~-~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDF 76 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDL---ELVAAF-DRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDF 76 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCc---eEEEEE-ecCCccccccchhhhccccccCceeecchhhcccCCCEEEEC
Confidence 3689999999 99999999999876531 443 45 6665322 12221 4566766666777799999988
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHH
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~ 115 (272)
+.|....+.++-... .+..+|--+.|.+.+.+++
T Consensus 77 T~P~~~~~~l~~~~~---~~~~lVIGTTGf~~e~~~~ 110 (266)
T COG0289 77 TTPEATLENLEFALE---HGKPLVIGTTGFTEEQLEK 110 (266)
T ss_pred CCchhhHHHHHHHHH---cCCCeEEECCCCCHHHHHH
Confidence 877777666654432 2333443557888876654
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.002 Score=47.33 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=51.1
Q ss_pred cccHHHHHHHHHHHhCC----CCCCCcEE-EEeCCC--HHHHHHHHHcCceeecCchhhhc--cCCEEEEeeCcccHHHH
Q 024121 17 GAGKMAESIAKGVAKSG----VLPPDRIC-TAVHSN--LKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 17 G~G~mG~~la~~l~~~g----~~~~~~V~-v~~~r~--~~~~~~l~~~g~~~~~~~~~~~~--~aDivil~v~~~~~~~v 87 (272)
|+|++|+.++..|.+.. + +|. ++ +|+ ..........+.....+.++++. +.|+||=|..++.+.+.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~----~v~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDL----EVVGVA-DRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEE----EEEEEE-ESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCE----EEEEEE-ECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHH
Confidence 89999999999998763 4 554 55 887 11111111133455678888887 89999999888777766
Q ss_pred HHHhchhcCCCCEEEEEc
Q 024121 88 AMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~ 105 (272)
+.+. +..|.-||+.+
T Consensus 76 ~~~~---L~~G~~VVt~n 90 (117)
T PF03447_consen 76 YEKA---LERGKHVVTAN 90 (117)
T ss_dssp HHHH---HHTTCEEEES-
T ss_pred HHHH---HHCCCeEEEEC
Confidence 6554 45677777654
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0076 Score=52.89 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=53.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---------------------HHHH----HHHHc--Ccee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---------------------KRRD----AFESI--GVKV 61 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---------------------~~~~----~l~~~--g~~~ 61 (272)
...||.|||+|.+|+.++..|..+|. .+|+++ |++. .|++ .+.+. .+.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGv---g~i~lv-D~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v 98 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGV---GKVTIV-DRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV 98 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence 34689999999999999999999997 378888 7652 1222 22221 2221
Q ss_pred --e------cCchhhhccCCEEEEeeCcccHHHHHHHhc
Q 024121 62 --L------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (272)
Q Consensus 62 --~------~~~~~~~~~aDivil~v~~~~~~~v~~~l~ 92 (272)
. .+..+.++++|+||.|+.....+..+.++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~ 137 (339)
T PRK07688 99 EAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAA 137 (339)
T ss_pred EEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 1 122456778999999987665555555543
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0033 Score=53.97 Aligned_cols=70 Identities=24% Similarity=0.210 Sum_probs=48.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---HHHHHHHH----c--Ccee--e--cC---chhhhccC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---KRRDAFES----I--GVKV--L--SD---NNAVVEYS 72 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---~~~~~l~~----~--g~~~--~--~~---~~~~~~~a 72 (272)
+.+++.|+|+|-+|.+++..|.+.|. .+|+++ +|++ ++++.+.+ . ++.+ . .+ ..+.++++
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~---~~V~I~-~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~ 200 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGA---KEITIF-NIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASS 200 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccC
Confidence 45789999999999999999999998 149999 9986 56655543 1 1111 1 11 12234567
Q ss_pred CEEEEeeCcc
Q 024121 73 DVVVFSVKPQ 82 (272)
Q Consensus 73 Divil~v~~~ 82 (272)
|+||-|+|..
T Consensus 201 DilINaTp~G 210 (289)
T PRK12548 201 DILVNATLVG 210 (289)
T ss_pred CEEEEeCCCC
Confidence 8888888754
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0031 Score=55.64 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=58.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-C--ceeec-CchhhhccCCEEEEeeCcccHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-G--VKVLS-DNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-g--~~~~~-~~~~~~~~aDivil~v~~~~~~ 85 (272)
++|+|||+ |..|.-|.+.++++..++..++..+ .... ...+.... | ..+.. ...+...++|++|+|+|.....
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~-ss~~-sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~~s~ 79 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFF-STSQ-AGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGDYTN 79 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEe-cchh-hCCcccccCCCcceEEecCChhHhcCCCEEEECCCHHHHH
Confidence 78999998 9999999986666555444457666 4321 11111111 1 22222 1123457899999999988888
Q ss_pred HHHHHhchhcCCC--CEEEEEcCC
Q 024121 86 DVAMQIRPLLSRK--KLLVSVAAG 107 (272)
Q Consensus 86 ~v~~~l~~~l~~~--~~iis~~~~ 107 (272)
++..++.. .| .+|||.++.
T Consensus 80 ~~~~~~~~---aG~~~~VID~Ss~ 100 (369)
T PRK06598 80 EVYPKLRA---AGWQGYWIDAAST 100 (369)
T ss_pred HHHHHHHh---CCCCeEEEECChH
Confidence 88776643 45 468887653
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0029 Score=49.17 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=50.1
Q ss_pred CCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.+||-+ ..|.+++.-|.+.|. .|+++ +... .+.++.+++||+||.++. +..+
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~a----tVt~~-h~~T--------------~~l~~~~~~ADIVVsa~G~~~~i 93 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGA----TVTIC-HSKT--------------KNLQEITRRADIVVSAVGKPNLI 93 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-----EEEEE--TTS--------------SSHHHHHTTSSEEEE-SSSTT-B
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCC----eEEec-cCCC--------------CcccceeeeccEEeeeecccccc
Confidence 4567899999997 599999999999998 99988 6543 345667889999999995 4333
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..++++.++||+
T Consensus 94 ~~------~~ik~gavVIDv 107 (160)
T PF02882_consen 94 KA------DWIKPGAVVIDV 107 (160)
T ss_dssp -G------GGS-TTEEEEE-
T ss_pred cc------ccccCCcEEEec
Confidence 21 236899999986
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0052 Score=52.20 Aligned_cols=73 Identities=12% Similarity=0.198 Sum_probs=56.7
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee-CcccH
Q 024121 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KPQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v-~~~~~ 84 (272)
....+++.|||-++ .|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++ .|..+
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~a----tVtv~-hs~T--------------~~l~~~~~~ADIvv~AvG~p~~i 221 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNA----TVSVC-HVFT--------------DDLKKYTLDADILVVATGVKHLI 221 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCC----EEEEE-eccC--------------CCHHHHHhhCCEEEEccCCcccc
Confidence 45678999999998 99999999999888 99999 6422 24566789999999988 45543
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..++++.+||++
T Consensus 222 ~~------~~vk~gavVIDv 235 (287)
T PRK14176 222 KA------DMVKEGAVIFDV 235 (287)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 236789999987
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0063 Score=49.15 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=29.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
..||.|||+|.+|+.++++|..+|. .+++++ |.+
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GV---g~i~lv-D~d 54 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGI---GSLTIL-DDR 54 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCC---CEEEEE-ECC
Confidence 4689999999999999999999997 367777 544
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0046 Score=54.37 Aligned_cols=91 Identities=16% Similarity=0.266 Sum_probs=55.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c------C-------ceeecCchhhhccCCEE
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I------G-------VKVLSDNNAVVEYSDVV 75 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~------g-------~~~~~~~~~~~~~aDiv 75 (272)
+||+|+|+ |.||..+++.|.++..+ ++....++..+.-+.+.. . + ..+.....+...++|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~---~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYF---ELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCc---eEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEE
Confidence 58999996 99999999988876531 554331433322111111 0 1 11111123345789999
Q ss_pred EEeeCcccHHHHHHHhchhcCCCCEEEEEcCC
Q 024121 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
|+|+|.....++...+. ..|..+|+.++.
T Consensus 78 f~a~p~~~s~~~~~~~~---~~G~~VIDlsg~ 106 (341)
T TIGR00978 78 FSALPSEVAEEVEPKLA---EAGKPVFSNASN 106 (341)
T ss_pred EEeCCHHHHHHHHHHHH---HCCCEEEECChh
Confidence 99999987777765553 356678876554
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0055 Score=56.60 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=52.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeec--CchhhhccCCEEEEee
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS--DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~--~~~~~~~~aDivil~v 79 (272)
.++|.|+|+|..|.+.++.|...|+ +|+++ |++++..+.+.+.|+.... ...+.+.++|+||.+-
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~----~v~~~-D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp 78 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGA----RPTVC-DDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP 78 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC
Confidence 4789999999999999999999999 99999 9887766666667876532 2334567899999885
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0064 Score=55.51 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=50.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHH----HHHHHcCceee--cCchhhhccCCEEEEee
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRR----DAFESIGVKVL--SDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~----~~l~~~g~~~~--~~~~~~~~~aDivil~v 79 (272)
++.+++.|+|.|.+|.++|..|.+.|+ +|+++ +++. +.. +++.+.|+.+. ....+...++|+||.+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~----~V~~~-d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~ 76 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA----KVILT-DEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSP 76 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECC
Confidence 356899999999999999999999999 99999 8874 333 33444566542 22234456799999987
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0045 Score=53.18 Aligned_cols=80 Identities=6% Similarity=0.155 Sum_probs=55.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~ 89 (272)
.||+|+|. |-.|.-+.+.|..+.++ ++.....+.. .. ..+..++++++|++|+|+|+....++..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~---el~~l~s~~~----------~~-~~~~~~~~~~~D~vFlalp~~~s~~~~~ 67 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDI---ELLSIAPDRR----------KD-AAERAKLLNAADVAILCLPDDAAREAVS 67 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCe---EEEEEecccc----------cC-cCCHhHhhcCCCEEEECCCHHHHHHHHH
Confidence 48999987 99999999999887542 4432213321 11 1234456678999999999998877776
Q ss_pred HhchhcCCCCEEEEEcCC
Q 024121 90 QIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 90 ~l~~~l~~~~~iis~~~~ 107 (272)
.+. ..+..|||.++.
T Consensus 68 ~~~---~~g~~VIDlSad 82 (310)
T TIGR01851 68 LVD---NPNTCIIDASTA 82 (310)
T ss_pred HHH---hCCCEEEECChH
Confidence 653 367789988654
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0064 Score=52.12 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=58.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---HHHHHHHH-c----C--ceeecCc------hhhhccC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---KRRDAFES-I----G--VKVLSDN------NAVVEYS 72 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---~~~~~l~~-~----g--~~~~~~~------~~~~~~a 72 (272)
+.+++.|||+|-.+++++..|.+.|. .+|+++ +|++ ++++.+.+ . + +.. .+. .+...++
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~---~~i~i~-nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~~~l~~~~~~a 197 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGL---KEIKLF-NRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQQAFAEALASA 197 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCccHHHHHHHHHHHhhhccCceEEE-echhhhhhhhhhcccC
Confidence 45789999999999999999998886 389999 9994 47777665 1 1 122 122 1234578
Q ss_pred CEEEEeeCcccHH---H-HHHHhchhcCCCCEEEEEc
Q 024121 73 DVVVFSVKPQVVK---D-VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 73 Divil~v~~~~~~---~-v~~~l~~~l~~~~~iis~~ 105 (272)
|+||-|+|..... . .... ...++++.++.|+.
T Consensus 198 DivINaTp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~v 233 (288)
T PRK12749 198 DILTNGTKVGMKPLENESLVND-ISLLHPGLLVTECV 233 (288)
T ss_pred CEEEECCCCCCCCCCCCCCCCc-HHHCCCCCEEEEec
Confidence 9999988754321 1 1000 01245666777764
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0053 Score=52.13 Aligned_cols=73 Identities=19% Similarity=0.323 Sum_probs=55.8
Q ss_pred CCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||-| ..|.+++..|.+.|. .|+++ +.... +..+.+++||+||.++. +..+
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gA----tVtv~-hs~t~--------------~l~~~~~~ADIvV~AvG~p~~i 214 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGA----SVSVC-HILTK--------------DLSFYTQNADIVCVGVGKPDLI 214 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC----EEEEE-eCCcH--------------HHHHHHHhCCEEEEecCCCCcC
Confidence 4567899999999 999999999999998 99988 54321 23466889999999994 4433
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.++|++
T Consensus 215 ~~------~~vk~GavVIDv 228 (285)
T PRK14191 215 KA------SMVKKGAVVVDI 228 (285)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 235799999986
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.007 Score=50.06 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=28.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r 46 (272)
...||.|+|+|.+|+.++.+|...|. .+++++ |.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gv---g~i~lv-D~ 53 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGV---GKLGLV-DD 53 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cC
Confidence 34689999999999999999999997 366666 44
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0062 Score=52.03 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=50.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----Cc---eeec--CchhhhccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GV---KVLS--DNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----g~---~~~~--~~~~~~~~aDivil~ 78 (272)
+.+++.|+|+|-.|++++..|.+.|. .+|+++ ||+.++++.+.+. +. .... +..+.+.++|+||=|
T Consensus 126 ~~k~vlilGaGGaarAi~~aL~~~g~---~~i~i~-nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINa 201 (283)
T PRK14027 126 KLDSVVQVGAGGVGNAVAYALVTHGV---QKLQVA-DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNA 201 (283)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHCCC---CEEEEE-cCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEc
Confidence 45789999999999999999999886 379999 9999999888651 21 1111 112234567888877
Q ss_pred eCc
Q 024121 79 VKP 81 (272)
Q Consensus 79 v~~ 81 (272)
+|.
T Consensus 202 Tp~ 204 (283)
T PRK14027 202 TPM 204 (283)
T ss_pred CCC
Confidence 763
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0076 Score=51.47 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=24.6
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEE
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTA 43 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~ 43 (272)
||.|||+|.+|+.+++.|..+|. .+++++
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV---g~Itlv 29 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV---RHITFV 29 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC---CeEEEE
Confidence 68999999999999999999996 245444
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0062 Score=55.80 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=50.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-----HHHHHHHcCceeec--CchhhhccCCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-----RRDAFESIGVKVLS--DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-----~~~~l~~~g~~~~~--~~~~~~~~aDivil~v 79 (272)
..+||+|+|.|.-|.++++.|.+.|+ +|+++ |+++. ..+++.+.|+.+.. ...+.+.++|+||.+-
T Consensus 13 ~~~~i~v~G~G~sG~a~a~~L~~~G~----~V~~~-D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 13 KNKKVAVVGIGVSNIPLIKFLVKLGA----KVTAF-DKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred cCCeEEEEcccHHHHHHHHHHHHCCC----EEEEE-CCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECC
Confidence 35789999999999999999999999 99999 87642 12346667876542 2234467899999883
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.011 Score=44.84 Aligned_cols=73 Identities=11% Similarity=0.125 Sum_probs=45.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
.+.++|.|+|- ...|..++..|.+.|. .|+++ +++. .+.++.+++||+|+.++....+
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~ga----tV~~~-~~~t--------------~~l~~~v~~ADIVvsAtg~~~~-- 84 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGA----TVYSC-DWKT--------------IQLQSKVHDADVVVVGSPKPEK-- 84 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEe-CCCC--------------cCHHHHHhhCCEEEEecCCCCc--
Confidence 34455666655 4556666666665555 56555 4322 1556778999999999954322
Q ss_pred HHHHhchhcCCCCEEEEE
Q 024121 87 VAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~ 104 (272)
++ ...+++|.++++.
T Consensus 85 -i~--~~~ikpGa~Vidv 99 (140)
T cd05212 85 -VP--TEWIKPGATVINC 99 (140)
T ss_pred -cC--HHHcCCCCEEEEc
Confidence 21 1236899999876
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.16 Score=41.21 Aligned_cols=162 Identities=14% Similarity=0.206 Sum_probs=88.8
Q ss_pred CceeecCchhhhccCCEEEEeeCccc-HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-----CCCEEEEccCchh
Q 024121 58 GVKVLSDNNAVVEYSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-----HSRFIRVMPNTPS 131 (272)
Q Consensus 58 g~~~~~~~~~~~~~aDivil~v~~~~-~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-----~~~~~~~~p~~~~ 131 (272)
|+.+++|..|+++++|+|+.=+|-.. -.+++.++...+.+|.++.+.+ .++...+.+.+. +-.+-+.||+.-.
T Consensus 126 g~~vttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthac-tipttkf~kifed~gredlnvtsyhpg~vp 204 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHAC-TIPTTKFKKIFEDMGREDLNVTSYHPGTVP 204 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeec-ccchHHHHHHHHHhCccccceeccCCCCCc
Confidence 45677788899999999999987543 3566666666677887777654 567666655553 2456677876422
Q ss_pred hhcCCceEEEeCCCCCHHHHHHHHHHhhhc-CCeEEcCcccchhHHHch--HHHHHHHHHHHHHHHHH-HcCCCHHHHHH
Q 024121 132 AVGEAATVMSLGGTATEEDGELIGKLFGSV-GKIWRADEKLFDAITGLS--GPAYIFLAIEALADGGV-AAGLPRELALG 207 (272)
Q Consensus 132 ~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~-G~~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~-~~Gl~~~~a~~ 207 (272)
. ..|...+..| -.+++.++.+-++=+.. |..+.+....++.+.-.+ ..+..+.-+-+.-++.. -.|-+.+-+..
T Consensus 205 e-mkgqvyiaeg-yaseeavn~lyelg~karg~afk~pa~llgpvcdmcsavtaivyagll~yrdavt~ilgapadfaqm 282 (343)
T COG4074 205 E-MKGQVYIAEG-YASEEAVNALYELGEKARGLAFKVPAYLLGPVCDMCSAVTAIVYAGLLTYRDAVTDILGAPADFAQM 282 (343)
T ss_pred c-ccCcEEEecc-cccHHHHHHHHHHHHHhhcccccCcHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 2 3455555433 24666666665555433 444666555444332222 11111111112222221 35655555555
Q ss_pred HHHHHHHHHHHHHHh
Q 024121 208 LASQTVLGAASMVTK 222 (272)
Q Consensus 208 ~~~~~~~g~~~~~~~ 222 (272)
+....+.....++.+
T Consensus 283 ma~eal~qi~~lmee 297 (343)
T COG4074 283 MAVEALQQIAKLMEE 297 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555543
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0056 Score=51.98 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=50.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
+++.|+|+|-.+.+++..|.+.|. .+|+++ +|++++.+.+.+ .+.....+. ....+|+||=|+|..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~---~~i~i~-nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~G 189 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGF---TDGTIV-ARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIG 189 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccc
Confidence 589999999999999999999886 269999 999999988876 332221111 124589999998743
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.26 Score=42.28 Aligned_cols=105 Identities=19% Similarity=0.254 Sum_probs=67.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cCceeecCchhhhc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IGVKVLSDNNAVVE 70 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g~~~~~~~~~~~~ 70 (272)
++||+-||+|-.|.+-..-+.-. .+.-+|++. |.+..+...... .++-..++.+..+.
T Consensus 1 ~~kiccigagyvggptcavia~k--cp~i~vtvv-d~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ 77 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALK--CPDIEVTVV-DISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIK 77 (481)
T ss_pred CceEEEecCcccCCcchheeeec--CCceEEEEE-ecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhh
Confidence 47899999999998876654432 133367777 887776544322 12335577888899
Q ss_pred cCCEEEEeeC-cc--------------cHHHHHHHhchhcCCCCEEEEEcCCCCH---HHHHHHhC
Q 024121 71 YSDVVVFSVK-PQ--------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG 118 (272)
Q Consensus 71 ~aDivil~v~-~~--------------~~~~v~~~l~~~l~~~~~iis~~~~~~~---~~l~~~~~ 118 (272)
.+|+||+.|. |. ..++....|.+.....++++.- ++++. +.+...+.
T Consensus 78 eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvek-stvpv~aaesi~~il~ 142 (481)
T KOG2666|consen 78 EADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEK-STVPVKAAESIEKILN 142 (481)
T ss_pred hcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEee-ccccchHHHHHHHHHh
Confidence 9999999982 21 1233444455555677787754 44443 45666665
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.011 Score=49.47 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=28.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r 46 (272)
...||.|||+|.+|+.++.+|...|. .+++++ |.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gv---g~i~lv-D~ 64 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGV---GTLTLV-DF 64 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cC
Confidence 34689999999999999999999997 266666 54
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.013 Score=48.94 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=29.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
..||.|+|+|-+|+.++..|...|. .+++++ |.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gv---g~i~lv-D~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGV---GNLTLL-DFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCC---CEEEEE-eCCc
Confidence 4689999999999999999999997 367777 6543
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.01 Score=52.35 Aligned_cols=93 Identities=22% Similarity=0.238 Sum_probs=57.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH----------------------HHHHHHHH----c--Ccee
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL----------------------KRRDAFES----I--GVKV 61 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~----------------------~~~~~l~~----~--g~~~ 61 (272)
..||+|||+|-.|+.++..|.+.|. .+++++ |.+. .|++.+++ . ++..
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GV---geI~LV-D~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~ 251 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPV---REIHLF-DGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVP 251 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCC---CEEEEE-CCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEE
Confidence 4689999999999999999999996 266666 4320 12222322 1 2221
Q ss_pred e-----cCchhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 62 L-----SDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 62 ~-----~~~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
. .+..+.+.++|+||.|+.....+.++.+... ..+..+|++.-++
T Consensus 252 ~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~--~~gIP~Id~G~~l 301 (393)
T PRK06153 252 HPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLE--ALGIPFIDVGMGL 301 (393)
T ss_pred EeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHH--HcCCCEEEeeecc
Confidence 1 1222346788999999876666666655432 2345567653333
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.012 Score=52.60 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=30.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
...||.|+|+|-+|+.++..|...|. .+++++ |++
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv---g~i~lv-D~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV---GTLGIV-DHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCC
Confidence 34689999999999999999999997 378888 776
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.036 Score=45.12 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=56.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHc-Cceee---cCchhhhccCCEEEEeeCccc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESI-GVKVL---SDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~-g~~~~---~~~~~~~~~aDivil~v~~~~ 83 (272)
+.+++.|||.|..|..=++.|++.|. +|+++ .... +....+.+. ++... .+..+ ..++++||.|+++..
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga----~v~Vv-s~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~ 84 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGA----DVTVV-SPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEE 84 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC----EEEEE-cCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHH
Confidence 45789999999999999999999998 99999 6554 445555552 33221 22233 456999999999888
Q ss_pred HHHHHHHhc
Q 024121 84 VKDVAMQIR 92 (272)
Q Consensus 84 ~~~v~~~l~ 92 (272)
+.+-+.+..
T Consensus 85 ln~~i~~~a 93 (210)
T COG1648 85 LNERIAKAA 93 (210)
T ss_pred HHHHHHHHH
Confidence 776665544
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.004 Score=49.42 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=46.7
Q ss_pred eEEEEcccHHHHHH--HHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeecCchhhhccCCEEEE
Q 024121 12 ILGFIGAGKMAESI--AKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVVF 77 (272)
Q Consensus 12 ~IgiIG~G~mG~~l--a~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDivil 77 (272)
||+|||.|..-.+. ..-+.....++..+|.++ |+++++++...+ .| +..+.|..+++++||+||.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~-Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~ 79 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLM-DIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVIN 79 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE--SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEE-cCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 79999999876653 333334344455589999 999998763322 23 3457788999999999999
Q ss_pred eeCccc
Q 024121 78 SVKPQV 83 (272)
Q Consensus 78 ~v~~~~ 83 (272)
++...-
T Consensus 80 ~irvGg 85 (183)
T PF02056_consen 80 QIRVGG 85 (183)
T ss_dssp ---TTH
T ss_pred Eeeecc
Confidence 986553
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0093 Score=50.53 Aligned_cols=73 Identities=14% Similarity=0.280 Sum_probs=56.1
Q ss_pred CCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||-+ ..|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~A----tVti~-hs~T--------------~~l~~~~~~ADIvV~AvGkp~~i 214 (281)
T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANA----TVDIC-HIFT--------------KDLKAHTKKADIVIVGVGKPNLI 214 (281)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------cCHHHHHhhCCEEEEecCccccc
Confidence 4567899999998 899999999998887 99988 5432 234567899999999994 4443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.++|++
T Consensus 215 ~~------~~vk~gavvIDv 228 (281)
T PRK14183 215 TE------DMVKEGAIVIDI 228 (281)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 235789999986
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.015 Score=51.41 Aligned_cols=80 Identities=20% Similarity=0.184 Sum_probs=52.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHH----HHHH--cCceee-
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKVL- 62 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~----~l~~--~g~~~~- 62 (272)
...||.|||+|-+|+.++.+|...|. .+++++ |.+. .|++ ++.+ ..+.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gv---g~i~lv-D~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~ 102 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGV---GHITII-DDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTV 102 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEE
Confidence 34689999999999999999999997 367776 5542 1222 2223 223221
Q ss_pred -------cCchhhhccCCEEEEeeCcccHHHHHHHhc
Q 024121 63 -------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (272)
Q Consensus 63 -------~~~~~~~~~aDivil~v~~~~~~~v~~~l~ 92 (272)
.+..+.++++|+||.|+.....+.++..+.
T Consensus 103 ~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c 139 (355)
T PRK05597 103 SVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAA 139 (355)
T ss_pred EEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 112456789999999986655555555443
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.018 Score=47.74 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=33.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l 54 (272)
..||.|||+|-+|+.++..|...|. .+++++ |.+.-....+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gv---g~i~lv-D~D~ve~sNL 67 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGV---GRILLI-DEQTPELSNL 67 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCccChhhh
Confidence 4689999999999999999999997 378888 8765433333
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.011 Score=53.96 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=49.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH----HHHHHHHcCceee--cCchhhhcc-CCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK----RRDAFESIGVKVL--SDNNAVVEY-SDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~----~~~~l~~~g~~~~--~~~~~~~~~-aDivil~v 79 (272)
..++|.|+|.|.+|.++++.|.+.|+ +|.++ +++.. ..+.+.+.|+.+. .+..+...+ .|+||.+-
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~----~V~~~-d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGA----NVTVN-DGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-cCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 45789999999999999999999999 99999 87642 2244555677654 234444444 89888874
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.026 Score=41.74 Aligned_cols=80 Identities=23% Similarity=0.175 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHHHHH-------HhCCHHHHHHH
Q 024121 187 AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL-------EKSGFRGILMN 259 (272)
Q Consensus 187 ~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l~~l-------~~~~~~~~~~~ 259 (272)
+.|++. .+++.|+|++++.+++..+..++..+-. ..+..+.+..+.|++......+.+ ++.++.-.+.+
T Consensus 21 ~aEa~~-la~~~Gld~~~~~~vl~~~~~~s~~~~~---~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~~p~~~ 96 (122)
T PF14833_consen 21 LAEALA-LAEKAGLDPEQLLDVLSAGSGGSWMLKN---RAPRMILNGDFDPGFSLDLARKDLRLALDLAKEAGVPLPLGS 96 (122)
T ss_dssp HHHHHH-HHHHTTS-HHHHHHHHHTSTTHBHHHHH---HHHHHHHTTTTCSSSBHHHHHHHHHHHHHHHHHTT---HHHH
T ss_pred HHHHHH-HHHHhCCCHHHHHHHHccCCcCchHHHh---hhhhhhhcccCCccchhHhhccHHHHHHHHHHHcCCCCHHHH
Confidence 444444 5789999999999999988777754432 234457788888987776665554 45589889999
Q ss_pred HHHHHHHHHhh
Q 024121 260 AVVAAAKRSRE 270 (272)
Q Consensus 260 ~~~~~~~r~~~ 270 (272)
...+.++++.+
T Consensus 97 ~~~~~~~~a~~ 107 (122)
T PF14833_consen 97 AARQLYQAAKA 107 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998875
|
... |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.022 Score=50.26 Aligned_cols=84 Identities=17% Similarity=0.138 Sum_probs=56.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCc-h--------hhh--ccCCEEEEee
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDN-N--------AVV--EYSDVVVFSV 79 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~-~--------~~~--~~aDivil~v 79 (272)
++.|+|+|.||...+..+...|. .+|.+. |+++++++.+++ .+.....+. . +.. ..+|++|-|+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga---~~Viv~-d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA---SVVIVV-DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC---ceEEEe-CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 79999999999977666666664 488889 999999988877 555543332 1 112 2489999999
Q ss_pred CcccHHHHHHHhchhcCCCCEEE
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
-.. ..+.+....++++..++
T Consensus 247 G~~---~~~~~ai~~~r~gG~v~ 266 (350)
T COG1063 247 GSP---PALDQALEALRPGGTVV 266 (350)
T ss_pred CCH---HHHHHHHHHhcCCCEEE
Confidence 622 23333334445555554
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.018 Score=51.13 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=52.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHH----HHH--cCcee--e
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDA----FES--IGVKV--L 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~~----l~~--~g~~~--~ 62 (272)
..+|.|||+|-+|+.++..|...|. .+++++ |.+. .|++. +.+ ..+++ .
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gv---g~i~iv-D~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGV---GTITLI-DDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-eCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 4689999999999999999999996 367777 5541 12222 222 12221 1
Q ss_pred ------cCchhhhccCCEEEEeeCcccHHHHHHHhc
Q 024121 63 ------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (272)
Q Consensus 63 ------~~~~~~~~~aDivil~v~~~~~~~v~~~l~ 92 (272)
.+..+.++++|+||-|+.....+..+..+.
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~ 152 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA 152 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 123456788999999987766666665544
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.019 Score=46.42 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=29.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
..||.|||+|.+|+.++++|...|. .+++++ |.+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV---g~i~lv-D~d 52 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI---DSITIV-DHR 52 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-ECC
Confidence 4689999999999999999999997 367777 654
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.012 Score=54.15 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=49.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-H----HHHHHHcCceeecC-chhhhccCCEEEEee
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-R----RDAFESIGVKVLSD-NNAVVEYSDVVVFSV 79 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~----~~~l~~~g~~~~~~-~~~~~~~aDivil~v 79 (272)
....++|.|||.|..|.++|..|.+.|+ +|+++ ++++. . .+.+.+.|+.+... ..+...++|+||++.
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~----~V~~~-d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~ 86 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGA----RVTVV-DDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSP 86 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECC
Confidence 3456799999999999999999999999 99999 75532 2 23455578776422 122345799999886
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.012 Score=54.51 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=49.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH--HHHHHHHHc--Cceeec--CchhhhccCCEEEEe--eC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFESI--GVKVLS--DNNAVVEYSDVVVFS--VK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~~l~~~--g~~~~~--~~~~~~~~aDivil~--v~ 80 (272)
+.++|.|+|.|..|.++|+.|.+.|+ +|+++ |... +..+++.+. |+.+.. ...+.+.++|+||.. +|
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G~----~v~~~-D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~ 80 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHGA----RLRVA-DTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLS 80 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCC----EEEEE-cCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCC
Confidence 45789999999999999999999999 99999 8643 233445554 444422 234556789999987 35
Q ss_pred c
Q 024121 81 P 81 (272)
Q Consensus 81 ~ 81 (272)
+
T Consensus 81 ~ 81 (498)
T PRK02006 81 P 81 (498)
T ss_pred C
Confidence 5
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.016 Score=49.08 Aligned_cols=75 Identities=12% Similarity=0.189 Sum_probs=57.1
Q ss_pred CCCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-ccc
Q 024121 6 IPAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQV 83 (272)
Q Consensus 6 ~~~~~~~IgiIG~G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~ 83 (272)
.....+++.|||-+ ..|.+++..|...|. .|+++ .++. .+..+.+++||+||.+++ +..
T Consensus 148 i~l~Gk~V~ViGrs~~vGrpla~lL~~~~a----tVtv~-hs~t--------------~~L~~~~~~ADIvI~Avgk~~l 208 (279)
T PRK14178 148 ISIAGKRAVVVGRSIDVGRPMAALLLNADA----TVTIC-HSKT--------------ENLKAELRQADILVSAAGKAGF 208 (279)
T ss_pred CCCCCCEEEEECCCccccHHHHHHHHhCCC----eeEEE-ecCh--------------hHHHHHHhhCCEEEECCCcccc
Confidence 34567899999998 999999999988887 89988 6543 245667889999999996 433
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
+. . ..+++|.+|||+.
T Consensus 209 v~---~---~~vk~GavVIDVg 224 (279)
T PRK14178 209 IT---P---DMVKPGATVIDVG 224 (279)
T ss_pred cC---H---HHcCCCcEEEEee
Confidence 22 1 1257999999874
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.044 Score=46.18 Aligned_cols=86 Identities=15% Similarity=0.201 Sum_probs=58.9
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Cc
Q 024121 6 IPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KP 81 (272)
Q Consensus 6 ~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~ 81 (272)
.+++++++-|-|+ +-+|..+|+.|.+.|+ +|.+. .|+.++++++++ ..++.. ..++-++.+ .+
T Consensus 2 ~~~~~~~~lITGASsGIG~~~A~~lA~~g~----~liLv-aR~~~kL~~la~-------~l~~~~-~v~v~vi~~DLs~~ 68 (265)
T COG0300 2 GPMKGKTALITGASSGIGAELAKQLARRGY----NLILV-ARREDKLEALAK-------ELEDKT-GVEVEVIPADLSDP 68 (265)
T ss_pred CCCCCcEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCcHHHHHHHHH-------HHHHhh-CceEEEEECcCCCh
Confidence 3456677888888 9999999999999999 99999 999999988875 111111 223333333 34
Q ss_pred ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
+.+..+..++.....+=.++|..
T Consensus 69 ~~~~~l~~~l~~~~~~IdvLVNN 91 (265)
T COG0300 69 EALERLEDELKERGGPIDVLVNN 91 (265)
T ss_pred hHHHHHHHHHHhcCCcccEEEEC
Confidence 56777777766542233567764
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.019 Score=48.84 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=55.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.+. .|+++ ++.. .+..+.+++||+||.++. +..+
T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a----TVtic-hs~T--------------~~l~~~~~~ADIvIsAvGkp~~i 212 (287)
T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALLLREDA----TVTLA-HSKT--------------QDLPAVTRRADVLVVAVGRPHLI 212 (287)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEecCCcCcc
Confidence 456789999998 6789999999998887 99988 5432 245667889999999994 4433
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+|||+
T Consensus 213 ~~------~~vk~GavVIDV 226 (287)
T PRK14173 213 TP------EMVRPGAVVVDV 226 (287)
T ss_pred CH------HHcCCCCEEEEc
Confidence 21 236799999986
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.065 Score=44.81 Aligned_cols=100 Identities=18% Similarity=0.247 Sum_probs=63.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH-------cCceeecCchhhhccCCEEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES-------IGVKVLSDNNAVVEYSDVVVF 77 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~-------~g~~~~~~~~~~~~~aDivil 77 (272)
...||.|+|.|+.|.+.+..++..|. ..++.+. |.++++++- |+- ..+....|. .+..+++++|+
T Consensus 19 ~~~KItVVG~G~VGmAca~siL~k~L--adel~lv-Dv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy-~~sa~S~lvIi 94 (332)
T KOG1495|consen 19 KHNKITVVGVGQVGMACAISILLKGL--ADELVLV-DVNEDKLKGEMMDLQHGSAFLSTPNVVASKDY-SVSANSKLVII 94 (332)
T ss_pred cCceEEEEccchHHHHHHHHHHHhhh--hhceEEE-ecCcchhhhhhhhhccccccccCCceEecCcc-cccCCCcEEEE
Confidence 35699999999999999999998886 3378888 888876542 110 122233333 44678999999
Q ss_pred eeCc--c--c-H-------HHHHHHhchh---cCCCCEEEEEcCCCCHHH
Q 024121 78 SVKP--Q--V-V-------KDVAMQIRPL---LSRKKLLVSVAAGVKLKD 112 (272)
Q Consensus 78 ~v~~--~--~-~-------~~v~~~l~~~---l~~~~~iis~~~~~~~~~ 112 (272)
..-. . . - .+++..+.|. ..|+.+++-.++++.+-+
T Consensus 95 TAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilT 144 (332)
T KOG1495|consen 95 TAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILT 144 (332)
T ss_pred ecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHH
Confidence 8722 1 1 1 1233333332 368888776777766543
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0074 Score=52.55 Aligned_cols=73 Identities=14% Similarity=0.237 Sum_probs=47.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeec----CchhhhccCCEEE---EeeCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLS----DNNAVVEYSDVVV---FSVKP 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~----~~~~~~~~aDivi---l~v~~ 81 (272)
+++|||||-|.+|..|+..-.+-|+ ++.+. +.+++....... .-+.... ...+++++||+|= --||.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~----~v~vL-dp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~ 75 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGI----KVIVL-DPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPA 75 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCC----EEEEe-cCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCH
Confidence 4789999999999999999999999 99999 877654322222 1222211 2345677888873 33444
Q ss_pred ccHHHH
Q 024121 82 QVVKDV 87 (272)
Q Consensus 82 ~~~~~v 87 (272)
+.++.+
T Consensus 76 ~aL~~l 81 (375)
T COG0026 76 EALEKL 81 (375)
T ss_pred HHHHHH
Confidence 444433
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.022 Score=48.25 Aligned_cols=73 Identities=15% Similarity=0.317 Sum_probs=55.9
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~A----tVt~c-hs~T--------------~~l~~~~~~ADIvIsAvGkp~~i 215 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENA----TVTIC-HSKT--------------KNLKEVCKKADILVVAIGRPKFI 215 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEcCCCcCcc
Confidence 456789999998 6789999999998887 99998 6432 245677889999999994 4443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+|||+
T Consensus 216 ~~------~~ik~gavVIDv 229 (278)
T PRK14172 216 DE------EYVKEGAIVIDV 229 (278)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 235799999986
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.011 Score=52.11 Aligned_cols=94 Identities=11% Similarity=0.156 Sum_probs=57.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcCceeecC-chhhhccCCEEEEeeCcccHHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLSD-NNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~~~-~~~~~~~aDivil~v~~~~~~~v 87 (272)
++|||+|+ |..|+.|.+.|.+...++..++..+.++.. .+.-.+......+..- ..+...+.|++|.|.+.+..+++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~~~ 80 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTNEI 80 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHHHH
Confidence 58999998 999999999999444335455665512211 1111111111222211 22356789999999988877777
Q ss_pred HHHhchhcCCC--CEEEEEcCC
Q 024121 88 AMQIRPLLSRK--KLLVSVAAG 107 (272)
Q Consensus 88 ~~~l~~~l~~~--~~iis~~~~ 107 (272)
...+. ..| .+|||.++.
T Consensus 81 ~p~~~---~aG~~~~VIDnSSa 99 (366)
T TIGR01745 81 YPKLR---ESGWQGYWIDAASS 99 (366)
T ss_pred HHHHH---hCCCCeEEEECChh
Confidence 66654 355 578887553
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.022 Score=48.70 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~a----tVtv~-hs~T--------------~~l~~~~~~ADIvIsAvGkp~~i 215 (297)
T PRK14186 155 DIAGKKAVVVGRSILVGKPLALMLLAANA----TVTIA-HSRT--------------QDLASITREADILVAAAGRPNLI 215 (297)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 445689999998 6689999999998887 89988 5432 245667899999999994 4433
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+||++
T Consensus 216 ~~------~~ik~gavVIDv 229 (297)
T PRK14186 216 GA------EMVKPGAVVVDV 229 (297)
T ss_pred CH------HHcCCCCEEEEe
Confidence 21 236799999986
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.022 Score=54.42 Aligned_cols=67 Identities=24% Similarity=0.325 Sum_probs=50.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH---------------------HHHHHHHcCceeec----
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS---- 63 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~---- 63 (272)
..+||.|||.|..|.+.|..|.+.|+ +|++| ++.+. ..+.+.+.|+.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~----~Vtv~-e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v 383 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV----QVDVF-DRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEI 383 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC----cEEEE-eCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCcc
Confidence 46899999999999999999999999 99999 77652 23444556765421
Q ss_pred ----CchhhhccCCEEEEeeC
Q 024121 64 ----DNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 64 ----~~~~~~~~aDivil~v~ 80 (272)
+..+.....|.||+++-
T Consensus 384 ~~~~~~~~l~~~~DaV~latG 404 (639)
T PRK12809 384 GRDITFSDLTSEYDAVFIGVG 404 (639)
T ss_pred CCcCCHHHHHhcCCEEEEeCC
Confidence 22344567899999983
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.042 Score=50.43 Aligned_cols=103 Identities=11% Similarity=0.120 Sum_probs=70.3
Q ss_pred CCCCeEEEEcc----------cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH--HH-HHH-----------------H-
Q 024121 8 AESFILGFIGA----------GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--RD-AFE-----------------S- 56 (272)
Q Consensus 8 ~~~~~IgiIG~----------G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~--~~-~l~-----------------~- 56 (272)
...+||+|+|+ ..-...++..|.+.|. +|.+| |.--.. .. .+. .
T Consensus 322 ~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~----~V~~~-DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (473)
T PLN02353 322 VSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA----KLSIY-DPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTA 396 (473)
T ss_pred cCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCC----EEEEE-CCCCChHHHHHHhhccccccccccccccccccc
Confidence 45689999998 4577889999999999 99999 875322 11 110 0
Q ss_pred -cCceeecCchhhhccCCEEEEeeCcccHHHH-HHHhchhcCCCCEEEEEcCCCCHHHHHH
Q 024121 57 -IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV-AMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (272)
Q Consensus 57 -~g~~~~~~~~~~~~~aDivil~v~~~~~~~v-~~~l~~~l~~~~~iis~~~~~~~~~l~~ 115 (272)
.++..+.+..++++++|+|+++++...++++ ++.+.+.+++..+|+|.-+-+..+.+++
T Consensus 397 ~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l~~~~~~~ 457 (473)
T PLN02353 397 VKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVLDHEKLRE 457 (473)
T ss_pred ccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCCCHHHHHh
Confidence 0235555667889999999999988776543 3444444444457888776666665543
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.026 Score=47.96 Aligned_cols=73 Identities=14% Similarity=0.250 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a----tVtic-hs~T--------------~~l~~~~~~ADIvI~AvG~p~~i 213 (282)
T PRK14169 153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDA----TVTIA-HSKT--------------RNLKQLTKEADILVVAVGVPHFI 213 (282)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEE-CCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 446689999998 6689999999998887 89988 5432 245667899999999994 4443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+||++
T Consensus 214 ~~------~~vk~GavVIDv 227 (282)
T PRK14169 214 GA------DAVKPGAVVIDV 227 (282)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 236799999986
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.013 Score=50.53 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=49.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH---HHH-cC----cee-------ecCchhhhccC
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA---FES-IG----VKV-------LSDNNAVVEYS 72 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~---l~~-~g----~~~-------~~~~~~~~~~a 72 (272)
..++|++-|+ |-+|+.+++.|++.|| .|... -|++++.+. +.+ .+ ..+ ..+..+++++|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY----~V~gt-VR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gc 79 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY----TVRGT-VRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGC 79 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC----EEEEE-EcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCC
Confidence 5689999987 9999999999999999 99998 788776322 443 11 221 23456789999
Q ss_pred CEEEEee
Q 024121 73 DVVVFSV 79 (272)
Q Consensus 73 Divil~v 79 (272)
|.||=+-
T Consensus 80 dgVfH~A 86 (327)
T KOG1502|consen 80 DGVFHTA 86 (327)
T ss_pred CEEEEeC
Confidence 9999553
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.026 Score=47.98 Aligned_cols=73 Identities=16% Similarity=0.253 Sum_probs=55.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.|. .|+++ +... .+..+..++||+||.++. +..+
T Consensus 156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a----tVt~c-hs~T--------------~~l~~~~~~ADIvIsAvGk~~~i 216 (284)
T PRK14177 156 DVTGKNAVVVGRSPILGKPMAMLLTEMNA----TVTLC-HSKT--------------QNLPSIVRQADIIVGAVGKPEFI 216 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEeCCCcCcc
Confidence 456689999998 6789999999998887 99998 6432 245567899999999994 4443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+|||+
T Consensus 217 ~~------~~ik~gavVIDv 230 (284)
T PRK14177 217 KA------DWISEGAVLLDA 230 (284)
T ss_pred CH------HHcCCCCEEEEe
Confidence 21 236799999986
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.033 Score=44.51 Aligned_cols=88 Identities=20% Similarity=0.204 Sum_probs=57.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---cCceee--cC----chhhhccCCEEE
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---IGVKVL--SD----NNAVVEYSDVVV 76 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~g~~~~--~~----~~~~~~~aDivi 76 (272)
..+.+++.|||- ...|.+++.-|.+.|. .|+++ +.+.-.. +.. ..-+-+ .+ ..+.+++||+||
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~A----tVti~-~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVI 131 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGA----RVYSV-DINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVI 131 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEE-ecCcccc--cccccccccccccccchhhHHHHHhhhCCEEE
Confidence 567899999998 5679999999999988 99988 7432111 000 000001 12 457789999999
Q ss_pred EeeCcccHHHHHHHhchhcCCCCEEEEEc
Q 024121 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 77 l~v~~~~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
.+++...+. +. ...+++|.++|++.
T Consensus 132 sAvG~~~~~--i~--~d~ik~GavVIDVG 156 (197)
T cd01079 132 TGVPSPNYK--VP--TELLKDGAICINFA 156 (197)
T ss_pred EccCCCCCc--cC--HHHcCCCcEEEEcC
Confidence 999543321 11 12357999999863
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.011 Score=51.94 Aligned_cols=92 Identities=15% Similarity=0.224 Sum_probs=54.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHh--------CCCCCCCcE-EEEeCCCH----------HHHHHHHH-cC-ce-ee-----
Q 024121 10 SFILGFIGAGKMAESIAKGVAK--------SGVLPPDRI-CTAVHSNL----------KRRDAFES-IG-VK-VL----- 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~--------~g~~~~~~V-~v~~~r~~----------~~~~~l~~-~g-~~-~~----- 62 (272)
.++|+++|+|++|+.+++.|.+ .|. . -+| .+. +++. +++.+.++ .+ +. ..
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~-~-l~VvaV~-ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGV-E-LKVVSIT-DTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC-C-EEEEEEE-eCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 4789999999999999998877 343 0 133 334 5431 22222222 11 10 10
Q ss_pred --cCchhhh--ccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCC
Q 024121 63 --SDNNAVV--EYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 63 --~~~~~~~--~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
.+..+.+ .++|+||-++.++...+++.+. +..++-||+...+
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~G~~VVtanK~ 124 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKEGKSVVTSNKP 124 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcHHHHHHHHHH---HhhCCcEEECCHH
Confidence 1445665 4799999998777666666554 3466667755443
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.018 Score=53.76 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=39.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
...+++.|+|+|-+|.+++..|.+.|. +|+++ +|+.++++.+.+
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~----~V~i~-nR~~e~a~~la~ 420 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA----RVVIA-NRTYERAKELAD 420 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHH
Confidence 445789999999999999999999998 99999 999998888765
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.055 Score=47.68 Aligned_cols=87 Identities=13% Similarity=0.151 Sum_probs=58.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC---CHHHHHHHHHcCceeecCchh------hhccCCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS---NLKRRDAFESIGVKVLSDNNA------VVEYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r---~~~~~~~l~~~g~~~~~~~~~------~~~~aDivil~v 79 (272)
...+|.|+|+|.+|...+..+...|. +|+++ +| ++++.+.+++.|+.......+ .....|+||-|+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~----~vi~~-~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~ 246 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF----EVYVL-NRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEAT 246 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC----eEEEE-ecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECc
Confidence 34689999999999998888888887 88888 87 677877777777754321111 123578999888
Q ss_pred Ccc-cHHHHHHHhchhcCCCCEEEEE
Q 024121 80 KPQ-VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 80 ~~~-~~~~v~~~l~~~l~~~~~iis~ 104 (272)
... .+.+.+. .++++..++.+
T Consensus 247 g~~~~~~~~~~----~l~~~G~~v~~ 268 (355)
T cd08230 247 GVPPLAFEALP----ALAPNGVVILF 268 (355)
T ss_pred CCHHHHHHHHH----HccCCcEEEEE
Confidence 643 3444433 34555555543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.026 Score=47.90 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=55.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.+. .|+++ ++.. .+..+..++||+||.++. |..+
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~a----tVt~c-hs~T--------------~nl~~~~~~ADIvIsAvGkp~~i 214 (282)
T PRK14166 154 DLEGKDAVIIGASNIVGRPMATMLLNAGA----TVSVC-HIKT--------------KDLSLYTRQADLIIVAAGCVNLL 214 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEcCCCcCcc
Confidence 456689999998 5689999999998887 89988 5432 245667899999999994 5543
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.++||+
T Consensus 215 ~~------~~vk~GavVIDv 228 (282)
T PRK14166 215 RS------DMVKEGVIVVDV 228 (282)
T ss_pred CH------HHcCCCCEEEEe
Confidence 32 235799999986
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.021 Score=52.25 Aligned_cols=63 Identities=22% Similarity=0.387 Sum_probs=48.0
Q ss_pred eEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceeec-CchhhhccCCEEEEee
Q 024121 12 ILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLS-DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 12 ~IgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~aDivil~v 79 (272)
+|-|||.|..|.+ +|+.|.+.|+ +|+++ |++.. ..++|.+.|+.+.. ...+.+.++|+||.+-
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~----~v~~~-D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~sp 66 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGY----QVSGS-DIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSA 66 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCC----eEEEE-CCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECC
Confidence 4889999999998 9999999999 99999 86543 33456667877643 2334466899998873
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.044 Score=46.93 Aligned_cols=91 Identities=16% Similarity=0.228 Sum_probs=66.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCc-EEEEeCCC--HHHHHHHHHcCceeecCchhhhcc--CCEEEEeeCcc
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDR-ICTAVHSN--LKRRDAFESIGVKVLSDNNAVVEY--SDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~-V~v~~~r~--~~~~~~l~~~g~~~~~~~~~~~~~--aDivil~v~~~ 82 (272)
+..||.|.|. |++|..+.++|.+.|+ + ++.. ++. .+.. .|+....+..++-+. .|+.++++|++
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~----~~v~pV-np~~~~~~v-----~G~~~y~sv~dlp~~~~~DlAvi~vp~~ 76 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGT----NIVGGV-TPGKGGTTV-----LGLPVFNTVAEAVEATGANASVIYVPPP 76 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCC----CEEEEE-CCCCCCCeE-----eCeeccCCHHHHhhccCCCEEEEEcCHH
Confidence 3568999998 9999999999999888 5 3344 544 2111 578888888887776 89999999999
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcCCCCHH
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKLK 111 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~~~~~~ 111 (272)
.+.+++++.... .- +.+|-.++|...+
T Consensus 77 ~v~~~l~e~~~~-gv-k~avI~s~Gf~~~ 103 (291)
T PRK05678 77 FAADAILEAIDA-GI-DLIVCITEGIPVL 103 (291)
T ss_pred HHHHHHHHHHHC-CC-CEEEEECCCCCHH
Confidence 999998876542 12 2333345777764
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.025 Score=54.25 Aligned_cols=66 Identities=24% Similarity=0.376 Sum_probs=48.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH---------------------HHHHHHHcCceeec----
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS---- 63 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~---- 63 (272)
..++|.|||.|..|.+.|..|.+.|+ +|+++ ++.+. ..+.+.+.|+.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~----~V~V~-E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v 400 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV----AVTVY-DRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEV 400 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-ecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEe
Confidence 56799999999999999999999999 99999 87532 12334446765432
Q ss_pred ----CchhhhccCCEEEEee
Q 024121 64 ----DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 64 ----~~~~~~~~aDivil~v 79 (272)
+..+...+.|.||+++
T Consensus 401 ~~~i~~~~~~~~~DavilAt 420 (654)
T PRK12769 401 GKDISLESLLEDYDAVFVGV 420 (654)
T ss_pred CCcCCHHHHHhcCCEEEEeC
Confidence 1233345799999987
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.024 Score=55.72 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=51.1
Q ss_pred CCCCCeEEEEcccHHHHHH-HHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcCceeec-CchhhhccCCEEEEe
Q 024121 7 PAESFILGFIGAGKMAESI-AKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLS-DNNAVVEYSDVVVFS 78 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~l-a~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~~-~~~~~~~~aDivil~ 78 (272)
|+.+++|.|||.|..|.+. |+.|.+.|+ +|+++ |.++ ...++|.+.|+.+.. ...+.+.++|+|+..
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G~----~V~~s-D~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRGY----SVSGS-DLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYS 70 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCCC----eEEEE-CCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEEC
Confidence 4556689999999999997 999999999 99999 8653 334556667877642 233556789999877
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.028 Score=47.75 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.+. .|+++ +... .+..+.+++||+||.++. +..+
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~a----tVtic-hs~T--------------~~l~~~~~~ADIvI~AvG~~~~i 214 (284)
T PRK14170 154 QIEGKRAVVIGRSNIVGKPVAQLLLNENA----TVTIA-HSRT--------------KDLPQVAKEADILVVATGLAKFV 214 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEecCCcCcc
Confidence 446789999998 5679999999998887 99988 5432 245677899999999994 4443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.++|++
T Consensus 215 ~~------~~vk~GavVIDv 228 (284)
T PRK14170 215 KK------DYIKPGAIVIDV 228 (284)
T ss_pred CH------HHcCCCCEEEEc
Confidence 21 235789999986
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.029 Score=47.78 Aligned_cols=73 Identities=14% Similarity=0.263 Sum_probs=55.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee-CcccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KPQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v-~~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.+. .|+++ +... .+..+.+++||+||.++ .|..+
T Consensus 156 ~l~GK~vvViGrS~iVGkPla~lL~~~~A----TVtic-hs~T--------------~~L~~~~~~ADIvV~AvGkp~~i 216 (288)
T PRK14171 156 NLTGKNVVIIGRSNIVGKPLSALLLKENC----SVTIC-HSKT--------------HNLSSITSKADIVVAAIGSPLKL 216 (288)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCCCCcc
Confidence 345689999998 5689999999998887 89988 5322 24567789999999999 45543
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+|||+
T Consensus 217 ~~------~~vk~GavVIDv 230 (288)
T PRK14171 217 TA------EYFNPESIVIDV 230 (288)
T ss_pred CH------HHcCCCCEEEEe
Confidence 32 235799999986
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.025 Score=47.28 Aligned_cols=67 Identities=12% Similarity=0.257 Sum_probs=46.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--Cceee-c---C-c---hhhh-ccCCEEE
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--GVKVL-S---D-N---NAVV-EYSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--g~~~~-~---~-~---~~~~-~~aDivi 76 (272)
++|+|.|+|+ |.+|+.+++.|++.|+ +|++. .|++++...+... ++.+. . + . .+.+ .+.|+||
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi 90 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF----AVKAG-VRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVI 90 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC----EEEEE-ecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEE
Confidence 4579999995 9999999999999999 99998 8988775544321 23221 1 1 1 1233 4688888
Q ss_pred EeeC
Q 024121 77 FSVK 80 (272)
Q Consensus 77 l~v~ 80 (272)
.+.+
T Consensus 91 ~~~g 94 (251)
T PLN00141 91 CATG 94 (251)
T ss_pred ECCC
Confidence 7754
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.036 Score=49.67 Aligned_cols=79 Identities=15% Similarity=0.139 Sum_probs=51.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHH----HHHHH--cCcee--e
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRR----DAFES--IGVKV--L 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~----~~l~~--~g~~~--~ 62 (272)
..||.|||+|-+|+.++.+|..+|. .+++++ |.+. .|+ +.+.+ ..+++ .
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gv---g~l~lv-D~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGI---GRIGIV-DFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 4689999999999999999999997 256666 4321 112 22222 22322 1
Q ss_pred ------cCchhhhccCCEEEEeeCcccHHHHHHHhc
Q 024121 63 ------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (272)
Q Consensus 63 ------~~~~~~~~~aDivil~v~~~~~~~v~~~l~ 92 (272)
.+..+.+.++|+||-|+.....+..+.++.
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 122356789999999987666666665544
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.031 Score=47.87 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=55.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. +..+
T Consensus 164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~A----TVtvc-hs~T--------------~nl~~~~~~ADIvv~AvGk~~~i 224 (299)
T PLN02516 164 PIKGKKAVVVGRSNIVGLPVSLLLLKADA----TVTVV-HSRT--------------PDPESIVREADIVIAAAGQAMMI 224 (299)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEcCCCcCcc
Confidence 456789999998 5679999999998887 99998 5432 245677899999999993 4332
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+||++
T Consensus 225 ~~------~~vk~gavVIDv 238 (299)
T PLN02516 225 KG------DWIKPGAAVIDV 238 (299)
T ss_pred CH------HHcCCCCEEEEe
Confidence 21 236799999986
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.031 Score=47.69 Aligned_cols=73 Identities=19% Similarity=0.228 Sum_probs=55.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.+. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a----TVt~c-hs~T--------------~~l~~~~~~ADIvVsAvGkp~~i 217 (294)
T PRK14187 157 NLSGSDAVVIGRSNIVGKPMACLLLGENC----TVTTV-HSAT--------------RDLADYCSKADILVAAVGIPNFV 217 (294)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhhCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 455689999988 6789999999998887 99988 5432 245677899999999994 5443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+||++
T Consensus 218 ~~------~~ik~gaiVIDV 231 (294)
T PRK14187 218 KY------SWIKKGAIVIDV 231 (294)
T ss_pred CH------HHcCCCCEEEEe
Confidence 22 235789999986
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.069 Score=45.76 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=60.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC----cee-ecCchhh---hccCCEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG----VKV-LSDNNAV---VEYSDVV 75 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g----~~~-~~~~~~~---~~~aDiv 75 (272)
...+|.+||+|..|..-.- +.+ ++.+...++.+ |++++..+..++ .| ++. ..|..+. ..+.|+|
T Consensus 123 ~p~~VldIGcGpgpltaii-laa-~~~p~~~~~gi-D~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIV-LAK-HHLPTTSFHNF-DIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHH-HHH-hcCCCCEEEEE-eCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEE
Confidence 5578999999988764322 222 12233478899 999977654443 22 222 1222222 3689999
Q ss_pred EEeeC----cccHHHHHHHhchhcCCCCEEEEE
Q 024121 76 VFSVK----PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 76 il~v~----~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|+.+- ...-.++++.+...++||.+++--
T Consensus 200 F~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 200 FLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 99962 245678889999999999888743
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.068 Score=45.42 Aligned_cols=108 Identities=20% Similarity=0.271 Sum_probs=67.0
Q ss_pred CCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH---HHHHcCceee--cCchhhh-----cc
Q 024121 3 AFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD---AFESIGVKVL--SDNNAVV-----EY 71 (272)
Q Consensus 3 ~~~~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~---~l~~~g~~~~--~~~~~~~-----~~ 71 (272)
.++.+...+||.+.|+ |+||+..++.+.+.++ ++....++.+...+ .+...++.+. .+.++++ +.
T Consensus 4 ~~~~~~~~i~V~V~Ga~G~MG~~~~~av~~~~~----~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~ 79 (286)
T PLN02775 4 TASPPGSAIPIMVNGCTGKMGHAVAEAAVSAGL----QLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEY 79 (286)
T ss_pred cCCCcCCCCeEEEECCCChHHHHHHHHHhcCCC----EEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccC
Confidence 4555556689999999 9999999999999777 76654365442211 1211245555 6666655 24
Q ss_pred CC-EEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHh
Q 024121 72 SD-VVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (272)
Q Consensus 72 aD-ivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~ 117 (272)
+| ++|=-+.|+.+.+.+.... ..+..+|.-++|.+.+++++..
T Consensus 80 ~~~VvIDFT~P~a~~~~~~~~~---~~g~~~VvGTTG~~~e~l~~~~ 123 (286)
T PLN02775 80 PNLIVVDYTLPDAVNDNAELYC---KNGLPFVMGTTGGDRDRLLKDV 123 (286)
T ss_pred CCEEEEECCChHHHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHH
Confidence 78 5555556666666655433 2344455456778877766544
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.087 Score=43.71 Aligned_cols=87 Identities=15% Similarity=0.215 Sum_probs=53.8
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHH----HHH--cCcee--e-c
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDA----FES--IGVKV--L-S 63 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~~----l~~--~g~~~--~-~ 63 (272)
||.+||+|.+|+.++++|...|+ .+++++ |.+. .|++. +.+ ..+.+ . .
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv---g~i~iv-D~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~ 76 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF---GQIHVI-DMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQN 76 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEec
Confidence 68999999999999999999997 366666 4422 12221 222 12222 1 1
Q ss_pred C-------chhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 64 D-------NNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 64 ~-------~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
. ..+..++.|+||.|+.....+..+.++.-. .+..+|+.
T Consensus 77 ~i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~--~~iplI~~ 122 (234)
T cd01484 77 KVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIF--LIVPLIES 122 (234)
T ss_pred cCChhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEE
Confidence 1 134578899999998766666666654422 24456653
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.049 Score=44.85 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=53.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.++|.|.|. |.+|..+++.|.+.|+ +|.+. +|++++.+.+... + .+ ..+++.++.. .++.+
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~----~v~~~-~r~~~~~~~~~~~-~------~~--~~~~~~~~~~D~~~~~~~ 69 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA----KVVIY-DSNEEAAEALAAE-L------RA--AGGEARVLVFDVSDEAAV 69 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCChhHHHHHHHH-H------Hh--cCCceEEEEccCCCHHHH
Confidence 4578999986 9999999999999999 89999 9998765543320 0 00 1233444333 23345
Q ss_pred HHHHHHhchhcCCCCEEEEEcC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~ 106 (272)
.+++.++...+.+-..+|++.+
T Consensus 70 ~~~~~~~~~~~~~id~vi~~ag 91 (246)
T PRK05653 70 RALIEAAVEAFGALDILVNNAG 91 (246)
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 6666665444334356776643
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.033 Score=47.27 Aligned_cols=73 Identities=14% Similarity=0.292 Sum_probs=55.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~A----TVt~c-hs~T--------------~dl~~~~k~ADIvIsAvGkp~~i 215 (282)
T PRK14180 155 KTEGAYAVVVGASNVVGKPVSQLLLNAKA----TVTTC-HRFT--------------TDLKSHTTKADILIVAVGKPNFI 215 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEE-cCCC--------------CCHHHHhhhcCEEEEccCCcCcC
Confidence 445789999987 6789999999998887 99988 5432 244556889999999994 4443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+||++
T Consensus 216 ~~------~~vk~gavVIDv 229 (282)
T PRK14180 216 TA------DMVKEGAVVIDV 229 (282)
T ss_pred CH------HHcCCCcEEEEe
Confidence 32 235789999986
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.036 Score=52.11 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=26.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTA 43 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~ 43 (272)
..||.|||+|-+|+.+++.|...|. .+++++
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GV---g~ItlV 368 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGV---RHITFV 368 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC---CeEEEE
Confidence 4689999999999999999999997 255555
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.034 Score=47.24 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=54.9
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHh--CCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cc
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAK--SGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQ 82 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~--~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~ 82 (272)
....+++.|||- +..|.+++.-|.+ .+. .|+++ +... .+..+.+++||+||.++. |.
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~~~a----tVtvc-hs~T--------------~~l~~~~k~ADIvV~AvGkp~ 215 (284)
T PRK14193 155 ELAGAHVVVIGRGVTVGRPIGLLLTRRSENA----TVTLC-HTGT--------------RDLAAHTRRADIIVAAAGVAH 215 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHhhccCCC----EEEEe-CCCC--------------CCHHHHHHhCCEEEEecCCcC
Confidence 445789999988 6789999999987 566 89988 5432 355677899999999994 44
Q ss_pred cHHHHHHHhchhcCCCCEEEEE
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~ 104 (272)
.+.. .++++|.+|||+
T Consensus 216 ~i~~------~~ik~GavVIDv 231 (284)
T PRK14193 216 LVTA------DMVKPGAAVLDV 231 (284)
T ss_pred ccCH------HHcCCCCEEEEc
Confidence 3321 236799999986
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.034 Score=47.34 Aligned_cols=74 Identities=8% Similarity=0.196 Sum_probs=55.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
....+++.|||- ...|.+++.-|.+.+. .|+++ +... .+..+.+++||+||.++....+
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~a----tVt~c-hs~t--------------~~l~~~~~~ADIvI~AvG~p~~- 214 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENA----TVTYC-HSKT--------------KNLAELTKQADILIVAVGKPKL- 214 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEE-eCCc--------------hhHHHHHHhCCEEEEecCCCCc-
Confidence 456789999988 7789999999998887 99988 5432 2456678999999999943332
Q ss_pred HHHHHhchhcCCCCEEEEE
Q 024121 86 DVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~ 104 (272)
+. ...+++|.+|||+
T Consensus 215 --i~--~~~ik~gavVIDv 229 (284)
T PRK14190 215 --IT--ADMVKEGAVVIDV 229 (284)
T ss_pred --CC--HHHcCCCCEEEEe
Confidence 21 1235799999986
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.045 Score=50.30 Aligned_cols=66 Identities=24% Similarity=0.398 Sum_probs=48.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH---------------------HHHHHHHcCceeecC---
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLSD--- 64 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~~--- 64 (272)
..++|.|||.|..|...|..|.+.|+ +|+++ ++.+. ..+.+.+.|+.+..+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~----~V~i~-e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v 214 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGV----QVVVF-DRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEV 214 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC----eEEEE-ecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEe
Confidence 45789999999999999999999999 99999 77641 234455567654221
Q ss_pred -----chhhhccCCEEEEee
Q 024121 65 -----NNAVVEYSDVVVFSV 79 (272)
Q Consensus 65 -----~~~~~~~aDivil~v 79 (272)
..+....+|.||+++
T Consensus 215 ~~~~~~~~~~~~~D~vilAt 234 (467)
T TIGR01318 215 GRDISLDDLLEDYDAVFLGV 234 (467)
T ss_pred CCccCHHHHHhcCCEEEEEe
Confidence 123335799999998
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.045 Score=45.59 Aligned_cols=43 Identities=23% Similarity=0.214 Sum_probs=36.2
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
+..++|-|.| .|.+|..+++.|++.|+ +|.+. +|++++.+.+.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~----~v~~~-~r~~~~~~~~~ 45 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA----KVVIA-DLNDEAAAAAA 45 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHH
Confidence 3457899997 59999999999999999 99999 99987765543
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.078 Score=43.89 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=29.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
+..+|.|+|+|.+|+.++.+|...|. .+++++ |.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GV---g~i~Lv-D~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGV---GKLTLI-DFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCC
Confidence 45689999999999999999999997 367777 543
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.11 Score=44.07 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=28.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
...+|.|+|+|-+|+..+..|...|. .+++++ |.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV---g~itLi-D~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI---GAITLI-DMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC---CEEEEE-eCC
Confidence 45689999999999999999999995 266666 543
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.075 Score=45.06 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=36.7
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
+++++|-|.|+ |.+|.++++.|.+.|+ +|.+. +|++++.+.+.+
T Consensus 2 ~~~~~vlVtGasggiG~~la~~l~~~G~----~V~~~-~r~~~~~~~l~~ 46 (277)
T PRK06180 2 SSMKTWLITGVSSGFGRALAQAALAAGH----RVVGT-VRSEAARADFEA 46 (277)
T ss_pred CCCCEEEEecCCChHHHHHHHHHHhCcC----EEEEE-eCCHHHHHHHHh
Confidence 34567888876 9999999999999999 99999 999887766543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.066 Score=45.40 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=48.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---------cCcee-ecCchh---hhccCCEEEE
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---------IGVKV-LSDNNA---VVEYSDVVVF 77 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---------~g~~~-~~~~~~---~~~~aDivil 77 (272)
.||.|||.|.+-.....-....|. ...|..+ |++++..+...+ .+... +.+..+ -+.++|+|++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~--~~~v~~i-D~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGP--GARVHNI-DIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT----EEEEE-ESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCC--CCeEEEE-eCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 589999999998765443323221 1267788 999976543322 12232 223222 2568999999
Q ss_pred eeCcc----cHHHHHHHhchhcCCCCEEE
Q 024121 78 SVKPQ----VVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 78 ~v~~~----~~~~v~~~l~~~l~~~~~ii 102 (272)
+--.. .-.+++..+..++++|..|+
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEE
Confidence 96554 67789999999999998777
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.051 Score=48.79 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=50.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHH----HHHH--cCcee--e
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKV--L 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~----~l~~--~g~~~--~ 62 (272)
..||.|||+|-+|+.++.+|...|. .+++++ |.+. .|++ .+.+ ..+++ .
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gv---g~i~lv-D~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGV---GTLGIV-EFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCC---CeEEEE-CCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 4689999999999999999999997 256666 4321 1222 2222 12332 1
Q ss_pred ------cCchhhhccCCEEEEeeCcccHHHHHHHhc
Q 024121 63 ------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (272)
Q Consensus 63 ------~~~~~~~~~aDivil~v~~~~~~~v~~~l~ 92 (272)
.+..+.++++|+||-|+.....+-.+.++.
T Consensus 118 ~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 153 (392)
T PRK07878 118 EFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAA 153 (392)
T ss_pred eccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 112356788999999986555555555543
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.069 Score=45.64 Aligned_cols=93 Identities=12% Similarity=0.171 Sum_probs=65.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCceeecCchhhhcc--CCEEEEeeCcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEY--SDVVVFSVKPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~--aDivil~v~~~~~ 84 (272)
+..||.+.|. |.+|+.+-.++...|+ + .+| .-+|.+ .++ -.|+....+..|+-+. .|+.++++|++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~----~-~v~-~V~p~~~~~~--v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v 76 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGT----N-IVG-GVTPGKGGTT--VLGLPVFDSVKEAVEETGANASVIFVPAPFA 76 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCC----C-EEE-EECCCCCcce--ecCeeccCCHHHHhhccCCCEEEEecCHHHH
Confidence 3568999997 9999999999999998 5 333 334431 111 1578888888887665 7999999999999
Q ss_pred HHHHHHhchhcCCCCEEEEEcCCCCHH
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAGVKLK 111 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~~~~~ 111 (272)
.+++++.... .-...+| .++|.+..
T Consensus 77 ~~~l~e~~~~-Gvk~avI-is~Gf~e~ 101 (286)
T TIGR01019 77 ADAIFEAIDA-GIELIVC-ITEGIPVH 101 (286)
T ss_pred HHHHHHHHHC-CCCEEEE-ECCCCCHH
Confidence 9999876542 1222333 56777654
|
ATP citrate lyases appear to form an outgroup. |
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.12 Score=46.45 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=65.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCC----------HHHHHHHHHc--------CceeecCchh
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSN----------LKRRDAFESI--------GVKVLSDNNA 67 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~----------~~~~~~l~~~--------g~~~~~~~~~ 67 (272)
....+||+|.|.|++|+..++.|.+.|. +|+ +. |.+ .+.+.+.++. +.... ++.+
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~Ga----kVVaVs-D~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e 276 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGG----KIVAVS-DITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDD 276 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCC----EEEEEE-CCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCcc
Confidence 3466899999999999999999999998 776 55 765 5554333331 22222 2233
Q ss_pred h-hccCCEEEEeeCcccH-HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCc
Q 024121 68 V-VEYSDVVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNT 129 (272)
Q Consensus 68 ~-~~~aDivil~v~~~~~-~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~ 129 (272)
+ ..+||+++-|--...+ .+..+++ .-++|+-..++-....-.+.+. .+-+-+.|..
T Consensus 277 ~l~~~~DvliP~Al~~~I~~~na~~i-----~ak~I~egAN~p~t~ea~~~L~-~rGI~~~PD~ 334 (410)
T PLN02477 277 ILVEPCDVLIPAALGGVINKENAADV-----KAKFIVEAANHPTDPEADEILR-KKGVVVLPDI 334 (410)
T ss_pred ceeccccEEeeccccccCCHhHHHHc-----CCcEEEeCCCCCCCHHHHHHHH-HCCcEEEChH
Confidence 3 3489999988544433 3333443 3457776655433333334443 2334444543
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.048 Score=46.30 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.+. .|+++ +... .+..+.+++||+||.++. +..+
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~A----tVtic-hs~T--------------~nl~~~~~~ADIvI~AvGk~~~i 214 (282)
T PRK14182 154 DPKGKRALVVGRSNIVGKPMAMMLLERHA----TVTIA-HSRT--------------ADLAGEVGRADILVAAIGKAELV 214 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEecCCcCcc
Confidence 345689999988 6689999999998887 89988 5432 244567889999999994 4433
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+||++
T Consensus 215 ~~------~~ik~gaiVIDv 228 (282)
T PRK14182 215 KG------AWVKEGAVVIDV 228 (282)
T ss_pred CH------HHcCCCCEEEEe
Confidence 21 236799999986
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.19 Score=38.99 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=48.5
Q ss_pred CCeEEEEcc--cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH----H---HHHH----HHHcC--ceeecCchhhhccCCE
Q 024121 10 SFILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSNL----K---RRDA----FESIG--VKVLSDNNAVVEYSDV 74 (272)
Q Consensus 10 ~~~IgiIG~--G~mG~~la~~l~~~g~~~~~~V~v~~~r~~----~---~~~~----l~~~g--~~~~~~~~~~~~~aDi 74 (272)
..||+|||= +++..+++..+.+-|. .+.+. .... . -.+. +.+.| +.++.+..++++++|+
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~----~~~~~-~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDv 76 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGM----EVVLI-APEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADV 76 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTS----EEEEE-SSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SE
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCC----EEEEE-CCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCE
Confidence 578999993 8999999999999998 88877 5433 1 1111 12234 5677888899999999
Q ss_pred EEEeeCc
Q 024121 75 VVFSVKP 81 (272)
Q Consensus 75 vil~v~~ 81 (272)
|+.-.-.
T Consensus 77 vy~~~~~ 83 (158)
T PF00185_consen 77 VYTDRWQ 83 (158)
T ss_dssp EEEESSS
T ss_pred EEEcCcc
Confidence 9887643
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.082 Score=48.45 Aligned_cols=83 Identities=17% Similarity=0.296 Sum_probs=59.0
Q ss_pred CCCCCCCC--CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcC-ceeecC--chhhhccCCE
Q 024121 1 MDAFPIPA--ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-VKVLSD--NNAVVEYSDV 74 (272)
Q Consensus 1 ~~~~~~~~--~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g-~~~~~~--~~~~~~~aDi 74 (272)
|..+|-.. +.++|.|||.|.++..=++.|++.|. +|+++ .+.- +..+.+.+.| +..... ..+.++++++
T Consensus 1 m~~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga----~v~vi-sp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~l 75 (457)
T PRK10637 1 MDHLPIFCQLRDRDCLLVGGGDVAERKARLLLDAGA----RLTVN-ALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWL 75 (457)
T ss_pred CCeeceEEEcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEE
Confidence 66677764 45899999999999999999999998 99998 6542 3344454433 332211 1344789999
Q ss_pred EEEeeCcccHHHHH
Q 024121 75 VVFSVKPQVVKDVA 88 (272)
Q Consensus 75 vil~v~~~~~~~v~ 88 (272)
||.|+.+..+..-+
T Consensus 76 v~~at~d~~~n~~i 89 (457)
T PRK10637 76 AIAATDDDAVNQRV 89 (457)
T ss_pred EEECCCCHHHhHHH
Confidence 99999887665444
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.04 Score=50.36 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=48.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHH--cCceeec--CchhhhccCCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES--IGVKVLS--DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~--~g~~~~~--~~~~~~~~aDivil~v 79 (272)
..-.|.|||.|..|.++|+.|.+.|+ +|+++ |..+. ..++|.+ .|+.+.. ...+.+.++|+||..-
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~----~v~~~-D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp 76 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGI----PFAVM-DSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISP 76 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCC----eEEEE-eCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECC
Confidence 34579999999999999999999999 99999 86542 2334555 3776632 2345567899988773
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.016 Score=50.53 Aligned_cols=93 Identities=11% Similarity=0.073 Sum_probs=51.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhC------CCCCCCcE-EEEeCCCHHH-------HHHH---HHcC-cee--ec--Cchhh
Q 024121 11 FILGFIGAGKMAESIAKGVAKS------GVLPPDRI-CTAVHSNLKR-------RDAF---ESIG-VKV--LS--DNNAV 68 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~------g~~~~~~V-~v~~~r~~~~-------~~~l---~~~g-~~~--~~--~~~~~ 68 (272)
|||++||+|++|+.+++.|.+. |. .-+| .++ +++... .+++ .+.| +.. .. +..++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~--~l~VVaVs-ds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~l 77 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNN--GISVVSVS-DSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEI 77 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCC--CeEEEEEE-ECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHH
Confidence 5899999999999999998873 22 1133 344 654311 1121 1111 110 11 33333
Q ss_pred h-ccCCEEEEeeCcc-cHHHHHHHhchhcCCCCEEEEEcC
Q 024121 69 V-EYSDVVVFSVKPQ-VVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 69 ~-~~aDivil~v~~~-~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
. .++|+||-|++.. .-.....-+.+.+..|+-||+...
T Consensus 78 l~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNK 117 (326)
T PRK06392 78 FEIKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANK 117 (326)
T ss_pred hcCCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCH
Confidence 2 3689999999742 212223334445667877886543
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.1 Score=43.58 Aligned_cols=91 Identities=10% Similarity=0.014 Sum_probs=57.2
Q ss_pred CCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC--
Q 024121 4 FPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-- 80 (272)
Q Consensus 4 ~~~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-- 80 (272)
+++.+..+++-|.|. |.+|..++..|.+.|+ +|.+. +|+.++.+++.+. ..+...+.++.++.+.
T Consensus 3 ~~~~~~~k~~lItGa~~gIG~~~a~~l~~~G~----~v~~~-~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dl~ 70 (257)
T PRK09242 3 HRWRLDGQTALITGASKGIGLAIAREFLGLGA----DVLIV-ARDADALAQARDE-------LAEEFPEREVHGLAADVS 70 (257)
T ss_pred cccccCCCEEEEeCCCchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHH-------HHhhCCCCeEEEEECCCC
Confidence 344556678888876 8999999999999999 99999 9998776654331 0110112344444432
Q ss_pred -cccHHHHHHHhchhcCCCCEEEEEcC
Q 024121 81 -PQVVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 81 -~~~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
.+++...++++...+.+-..+|++.+
T Consensus 71 ~~~~~~~~~~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 71 DDEDRRAILDWVEDHWDGLHILVNNAG 97 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 33455666665544444456776543
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.04 Score=48.23 Aligned_cols=73 Identities=14% Similarity=0.249 Sum_probs=55.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.+. .|+++ .... .+..+.+++||+||.++. |..+
T Consensus 228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~A----TVTic-Hs~T--------------~nl~~~~r~ADIVIsAvGkp~~i 288 (364)
T PLN02616 228 EIKGKRAVVIGRSNIVGMPAALLLQREDA----TVSIV-HSRT--------------KNPEEITREADIIISAVGQPNMV 288 (364)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCC----eEEEe-CCCC--------------CCHHHHHhhCCEEEEcCCCcCcC
Confidence 446688999988 6789999999998887 89988 5432 245677899999999994 4443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+|||+
T Consensus 289 ~~------d~vK~GAvVIDV 302 (364)
T PLN02616 289 RG------SWIKPGAVVIDV 302 (364)
T ss_pred CH------HHcCCCCEEEec
Confidence 22 236799999986
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.091 Score=43.73 Aligned_cols=86 Identities=9% Similarity=0.123 Sum_probs=53.7
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEe--e-Cccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFS--V-KPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~--v-~~~~ 83 (272)
+..+++-|.|. |.+|.++++.|.+.|+ +|.+. +|++++.+.+.+. .........+.++. + .+++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~----~v~~~-~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dl~d~~~ 69 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG----IVIAA-DIDKEALNELLES-------LGKEFKSKKLSLVELDITDQES 69 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-ecChHHHHHHHHH-------HHhhcCCCceeEEEecCCCHHH
Confidence 34578888876 8999999999999999 99999 9998776655431 00000111222222 2 3445
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
+.++++++...+.+=..+|++.
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 70 LEEFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHHHHHHcCCccEEEECC
Confidence 6677776654443334677654
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.032 Score=52.01 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=35.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
+.++|.|.|. |.+|..+++.|++.|+ +|.++ .|+.++.+.+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~----~Vval-~Rn~ekl~~l~ 121 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF----RVRAG-VRSAQRAESLV 121 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHH
Confidence 3456778876 9999999999999999 99999 99988776543
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.2 Score=41.17 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=56.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHc-CceeecC--chhhhccCCEEEEeeCcccHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESI-GVKVLSD--NNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~-g~~~~~~--~~~~~~~aDivil~v~~~~~~ 85 (272)
.++|-|||.|.++..=+..|++.|. +|+++ .... +.+..+.+. .+..... ..+-++++++||.|+.+..+.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA----~VtVV-ap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN 99 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGC----YVYIL-SKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLN 99 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHH
Confidence 5689999999999999999999998 99999 6543 234445443 3433221 123367899999999888877
Q ss_pred HHHHHhc
Q 024121 86 DVAMQIR 92 (272)
Q Consensus 86 ~v~~~l~ 92 (272)
.-+.+..
T Consensus 100 ~~I~~~a 106 (223)
T PRK05562 100 NKIRKHC 106 (223)
T ss_pred HHHHHHH
Confidence 6665554
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.052 Score=46.19 Aligned_cols=73 Identities=15% Similarity=0.380 Sum_probs=54.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhC----CCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKS----GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK- 80 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~----g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~- 80 (272)
....+++.|||- ...|.+++.-|.+. +. .|+++ +... .+..+.+++||+||.++.
T Consensus 150 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~A----tVtvc-hs~T--------------~~l~~~~~~ADIvV~AvG~ 210 (287)
T PRK14181 150 PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNA----TVTLL-HSQS--------------ENLTEILKTADIIIAAIGV 210 (287)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHhCcCCCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCC
Confidence 456789999988 56899999999887 55 88888 5432 245677899999999994
Q ss_pred cccHHHHHHHhchhcCCCCEEEEE
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|..+.. ..+++|.+||++
T Consensus 211 p~~i~~------~~ik~GavVIDv 228 (287)
T PRK14181 211 PLFIKE------EMIAEKAVIVDV 228 (287)
T ss_pred cCccCH------HHcCCCCEEEEe
Confidence 443321 236799999986
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.041 Score=46.44 Aligned_cols=72 Identities=18% Similarity=0.343 Sum_probs=56.5
Q ss_pred CCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee-CcccHH
Q 024121 8 AESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KPQVVK 85 (272)
Q Consensus 8 ~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v-~~~~~~ 85 (272)
...+++.|||-++ .|.+|+.-|...++ .|+++ +... .+..+.+++||+|+.++ .|..+.
T Consensus 154 l~Gk~~vVVGrS~iVGkPla~lL~~~na----TVtvc-Hs~T--------------~~l~~~~k~ADIvv~AvG~p~~i~ 214 (283)
T COG0190 154 LRGKNVVVVGRSNIVGKPLALLLLNANA----TVTVC-HSRT--------------KDLASITKNADIVVVAVGKPHFIK 214 (283)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHhCCC----EEEEE-cCCC--------------CCHHHHhhhCCEEEEecCCccccc
Confidence 4568899999965 69999999999998 99999 5443 25567789999999999 565554
Q ss_pred HHHHHhchhcCCCCEEEEE
Q 024121 86 DVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~ 104 (272)
.+.++++.++|+.
T Consensus 215 ------~d~vk~gavVIDV 227 (283)
T COG0190 215 ------ADMVKPGAVVIDV 227 (283)
T ss_pred ------cccccCCCEEEec
Confidence 2446789999986
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.048 Score=52.30 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=49.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH---------------------HHHHHHHcCceeecC-
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLSD- 64 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~~- 64 (272)
+...++|.|||.|..|.+.|..|.+.|+ +|+++ ++++. ..+.+.+.|+.+..+
T Consensus 190 ~~~~k~VaIIGaGpAGl~aA~~La~~G~----~Vtv~-e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~ 264 (652)
T PRK12814 190 PKSGKKVAIIGAGPAGLTAAYYLLRKGH----DVTIF-DANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNT 264 (652)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC----cEEEE-ecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence 3456799999999999999999999999 99999 76532 123444466654211
Q ss_pred -------chhhhccCCEEEEee
Q 024121 65 -------NNAVVEYSDVVVFSV 79 (272)
Q Consensus 65 -------~~~~~~~aDivil~v 79 (272)
..+.....|.||+++
T Consensus 265 ~v~~dv~~~~~~~~~DaVilAt 286 (652)
T PRK12814 265 VFGRDITLEELQKEFDAVLLAV 286 (652)
T ss_pred cccCccCHHHHHhhcCEEEEEc
Confidence 223334699999998
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.079 Score=46.19 Aligned_cols=93 Identities=11% Similarity=0.044 Sum_probs=53.8
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcC-----------------------ceee--cCc
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-----------------------VKVL--SDN 65 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g-----------------------~~~~--~~~ 65 (272)
||||+|+|++|..+.+.+.+.+.-+..+|...++... +....+.+++ +.+. .++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p 80 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTP 80 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCCh
Confidence 6999999999999999988753101116665534332 3333443311 1111 123
Q ss_pred hhh-h--ccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCC
Q 024121 66 NAV-V--EYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 66 ~~~-~--~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
.+. . .+.|+||.|++.....+...+ ++..|..+|.++++
T Consensus 81 ~~~~w~~~gvDiVie~tG~~~s~e~a~~---~l~aGa~~V~~SaP 122 (325)
T TIGR01532 81 EALPWRALGVDLVLDCTGVYGNREQGER---HIRAGAKRVLFSHP 122 (325)
T ss_pred hhccccccCCCEEEEccchhccHHHHHH---HHHcCCeEEEecCC
Confidence 222 1 479999999987766555543 34456566656544
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.11 Score=43.82 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=36.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
+.++|.|.|+ |-+|.++++.|.+.|+ +|++. +|++++.+.+..
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~----~V~~~-~r~~~~l~~~~~ 45 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY----TVYGA-ARRVDKMEDLAS 45 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHh
Confidence 4578888886 9999999999999999 99999 999887765543
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.12 Score=43.99 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=28.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
..+|.|||+|-+|+.++..|..+|. .+++++ |.+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGV---G~i~lv-D~D 60 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGI---GKFTIA-DFD 60 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCC---CeEEEE-eCC
Confidence 4689999999999999999999997 366666 543
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.15 Score=43.33 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=56.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCc-EEEEeCCCHHHHHHHHHcCceeecCch---hhh------ccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFESIGVKVLSDNN---AVV------EYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~-V~v~~~r~~~~~~~l~~~g~~~~~~~~---~~~------~~aDivil~ 78 (272)
...++.|+|+|.+|...+..+...|. + |++. ++++++.+.+++.|+...-+.. +.+ ...|++|-|
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~----~~Vi~~-~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~ 194 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGA----ARVVAA-DPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEF 194 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEE-CCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEEC
Confidence 34689999999999998888888887 6 8888 9999888877777764322211 111 246888887
Q ss_pred eC-cccHHHHHHHhchhcCCCCEEEEE
Q 024121 79 VK-PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 79 v~-~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
+. +..+...++- ++++..++..
T Consensus 195 ~G~~~~~~~~~~~----l~~~G~iv~~ 217 (280)
T TIGR03366 195 SGATAAVRACLES----LDVGGTAVLA 217 (280)
T ss_pred CCChHHHHHHHHH----hcCCCEEEEe
Confidence 74 3334444333 3444455543
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.58 Score=40.36 Aligned_cols=153 Identities=15% Similarity=0.204 Sum_probs=89.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---cC----ce-----------------eec
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---IG----VK-----------------VLS 63 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~g----~~-----------------~~~ 63 (272)
.++.++-++|+|...--+|.-+..+|. .++.++ +|-.-+-+.+.+ .+ ++ ...
T Consensus 2 ~~m~~vLllGtGpvaIQlAv~l~~h~d---~~lg~~-~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~k 77 (431)
T COG4408 2 HNMLPVLLLGTGPVAIQLAVDLSAHGD---ARLGLY-NRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIK 77 (431)
T ss_pred CcccceeEeecCcHHHHHHHHHHhccC---ceeecc-CCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHh
Confidence 456789999999999999999988774 277788 774333222322 11 10 123
Q ss_pred CchhhhccCCEEEEeeCcccHHHHHHHhc-hhcCCCCEEEEEcCCCCHH-HHHH---HhC-CCCEEEEc-----------
Q 024121 64 DNNAVVEYSDVVVFSVKPQVVKDVAMQIR-PLLSRKKLLVSVAAGVKLK-DLQE---WTG-HSRFIRVM----------- 126 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~~~~~v~~~l~-~~l~~~~~iis~~~~~~~~-~l~~---~~~-~~~~~~~~----------- 126 (272)
++.++..+-+.+|+|||.++..+|+.+|- ..+..=+.+|-+++.+... -+++ .++ ++.++.+.
T Consensus 78 d~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk~id~ 157 (431)
T COG4408 78 DLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADTKYIDA 157 (431)
T ss_pred hHHHhhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccceeecc
Confidence 45666778899999999999999998863 2233333444334444433 1222 122 33344321
Q ss_pred --cCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCe
Q 024121 127 --PNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI 164 (272)
Q Consensus 127 --p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~ 164 (272)
|++.-..+-..-+...+...+....+.+..++...|-.
T Consensus 158 ~~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~~I~ 197 (431)
T COG4408 158 EQPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQHGID 197 (431)
T ss_pred cCcchHHHHHHhHheeeccCCCCChHHHHHHHHHHhcCCc
Confidence 22211111111223334455667788899999999944
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.049 Score=47.41 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.+. .|+++ .... .+..+..++||+||.++. |..+
T Consensus 211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~A----TVTic-Hs~T--------------~nl~~~~~~ADIvIsAvGkp~~v 271 (345)
T PLN02897 211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDA----TVSTV-HAFT--------------KDPEQITRKADIVIAAAGIPNLV 271 (345)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCC----EEEEE-cCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 456789999988 5679999999988887 89888 5432 245677899999999994 4443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+|||+
T Consensus 272 ~~------d~vk~GavVIDV 285 (345)
T PLN02897 272 RG------SWLKPGAVVIDV 285 (345)
T ss_pred CH------HHcCCCCEEEEc
Confidence 21 235799999986
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.13 Score=45.17 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=53.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHh-CC-CCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhc--cCCEEEEeeCcccHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAK-SG-VLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~-~g-~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDivil~v~~~~~~ 85 (272)
..++.|+|+|.+|...+..+.+ .| . +|++. ++++++.+.+++.+..... .+..+ ..|+||=|+......
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~----~vi~~-~~~~~k~~~a~~~~~~~~~--~~~~~~~g~d~viD~~G~~~~~ 236 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPES----KLVVF-GKHQEKLDLFSFADETYLI--DDIPEDLAVDHAFECVGGRGSQ 236 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCC----cEEEE-eCcHhHHHHHhhcCceeeh--hhhhhccCCcEEEECCCCCccH
Confidence 4689999999999977776654 33 4 78889 9999888776654433211 11112 478888888532222
Q ss_pred HHHHHhchhcCCCCEEEE
Q 024121 86 DVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis 103 (272)
..+.+....++++..++.
T Consensus 237 ~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 237 SAINQIIDYIRPQGTIGL 254 (341)
T ss_pred HHHHHHHHhCcCCcEEEE
Confidence 233333344556555553
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.054 Score=49.44 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=50.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHH--cCceeecC--chhhhccCCEEEEee--C
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES--IGVKVLSD--NNAVVEYSDVVVFSV--K 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~--~g~~~~~~--~~~~~~~aDivil~v--~ 80 (272)
..++|.|+|.|..|.+.++.|.+.|+ +|.++ |.++. ..+++.+ .|+.+... ..+...++|+||.+. |
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~g~----~v~~~-d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~ 78 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGA----EVAAY-DAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGIS 78 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence 45789999999999999999999999 99999 87543 2344544 37665322 233346899999885 5
Q ss_pred cc
Q 024121 81 PQ 82 (272)
Q Consensus 81 ~~ 82 (272)
++
T Consensus 79 ~~ 80 (445)
T PRK04308 79 ER 80 (445)
T ss_pred CC
Confidence 43
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.028 Score=50.89 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=49.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH----HHHHHHcCceeec--CchhhhccCCEEEEe--eC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR----RDAFESIGVKVLS--DNNAVVEYSDVVVFS--VK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~----~~~l~~~g~~~~~--~~~~~~~~aDivil~--v~ 80 (272)
..+||.|+|+|.=|.+.++.|.+.|+ +|+++ |.++.. ...+...++.+.. ...+....+|+|+.. +|
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~----~v~v~-D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGA----EVTVS-DDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIP 80 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCC----eEEEE-cCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCC
Confidence 37899999999999999999999999 99999 865543 1222235554432 122456789999987 35
Q ss_pred cc
Q 024121 81 PQ 82 (272)
Q Consensus 81 ~~ 82 (272)
++
T Consensus 81 ~~ 82 (448)
T COG0771 81 PT 82 (448)
T ss_pred CC
Confidence 44
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.17 Score=42.21 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=37.2
Q ss_pred CCCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024121 1 MDAFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (272)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l 54 (272)
|+.-.-..+.+++-|.|. |.+|..+++.|.+.|+ +|.+. +|++++.+.+
T Consensus 1 ~~~~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~----~v~~~-~~~~~~~~~~ 50 (255)
T PRK05717 1 MSEPNPGHNGRVALVTGAARGIGLGIAAWLIAEGW----QVVLA-DLDRERGSKV 50 (255)
T ss_pred CCCCCcccCCCEEEEeCCcchHHHHHHHHHHHcCC----EEEEE-cCCHHHHHHH
Confidence 344334444567888875 9999999999999999 99999 8887665544
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.062 Score=44.41 Aligned_cols=53 Identities=26% Similarity=0.319 Sum_probs=43.2
Q ss_pred EEEEeCCCHHHHHHHHH-cCceeecCchhhh-ccCCEEEEeeCcccHHHHHHHhch
Q 024121 40 ICTAVHSNLKRRDAFES-IGVKVLSDNNAVV-EYSDVVVFSVKPQVVKDVAMQIRP 93 (272)
Q Consensus 40 V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~-~~aDivil~v~~~~~~~v~~~l~~ 93 (272)
+.+| |+++++++.+.+ .|+....+.++++ .+.|+|++|+|++...+...+...
T Consensus 5 vaV~-D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~ 59 (229)
T TIGR03855 5 AAVY-DRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAEKILK 59 (229)
T ss_pred EEEE-CCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHHHHHH
Confidence 4577 999999988877 7788888888875 579999999999988887766543
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.056 Score=46.28 Aligned_cols=73 Identities=12% Similarity=0.246 Sum_probs=54.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhC----CCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee-C
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKS----GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-K 80 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~----g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v-~ 80 (272)
....+++.|||- ...|.+++.-|.+. +. .|+++ .+.. .+..+.+++||+||.++ .
T Consensus 158 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~a----tVtv~-hs~T--------------~~l~~~~~~ADIvVsAvGk 218 (297)
T PRK14168 158 ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANA----TVTIV-HTRS--------------KNLARHCQRADILIVAAGV 218 (297)
T ss_pred CCCCCEEEEECCCCcccHHHHHHHHhcccCCCC----EEEEe-cCCC--------------cCHHHHHhhCCEEEEecCC
Confidence 456689999988 67899999999887 45 88888 5432 24567789999999999 4
Q ss_pred cccHHHHHHHhchhcCCCCEEEEE
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|..+.. ..+++|.+||++
T Consensus 219 p~~i~~------~~ik~gavVIDv 236 (297)
T PRK14168 219 PNLVKP------EWIKPGATVIDV 236 (297)
T ss_pred cCccCH------HHcCCCCEEEec
Confidence 444321 236799999986
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.081 Score=43.76 Aligned_cols=43 Identities=19% Similarity=0.129 Sum_probs=35.7
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024121 7 PAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (272)
Q Consensus 7 ~~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l 54 (272)
+++.++|.|.| +|.+|.++++.|.+.|+ +|++. +|++++...+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~----~V~~~-~r~~~~~~~~ 46 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA----EVIVV-DICGDDAAAT 46 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence 34567899998 59999999999999999 99999 9987655443
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.13 Score=43.92 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=50.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHH----HHHHHc--Ccee--
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRR----DAFESI--GVKV-- 61 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~----~~l~~~--g~~~-- 61 (272)
...+|.|+|+|-+|..++++|..+|. .+|+++ |.+. .|+ +++++. .+.+
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGV---g~itI~-D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~ 93 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGV---KSVTLH-DTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTV 93 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCC---CeEEEE-cCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEE
Confidence 34689999999999999999999997 367777 5432 111 233332 2322
Q ss_pred ec--CchhhhccCCEEEEeeCcccHHHHHHHh
Q 024121 62 LS--DNNAVVEYSDVVVFSVKPQVVKDVAMQI 91 (272)
Q Consensus 62 ~~--~~~~~~~~aDivil~v~~~~~~~v~~~l 91 (272)
.. ...+.+.+.|+|+.|..+......+.++
T Consensus 94 ~~~~~~~~~l~~fdvVV~~~~~~~~~~~in~~ 125 (286)
T cd01491 94 STGPLTTDELLKFQVVVLTDASLEDQLKINEF 125 (286)
T ss_pred EeccCCHHHHhcCCEEEEecCCHHHHHHHHHH
Confidence 22 1346678999999887543333333333
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.033 Score=48.97 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=45.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-cCceee-cCc-------hhhhccCCEEEEe
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGVKVL-SDN-------NAVVEYSDVVVFS 78 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~-~~~-------~~~~~~aDivil~ 78 (272)
+|||.|.|+ |-+|+.++..|++. |+ +|++. +|+.++...+.. .++... .|. .++++++|+||=+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~----~V~~~-~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW----EVYGM-DMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC----eEEEE-eCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 368999996 99999999999986 68 99999 887765544433 233321 121 2456789999943
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.054 Score=51.03 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=49.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---------------------HHHHHHHHcCceeecC-
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---------------------KRRDAFESIGVKVLSD- 64 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---------------------~~~~~l~~~g~~~~~~- 64 (272)
+...++|.|||.|..|.+.+..|.+.|+ +|+++ ++.+ .+.+.+.+.|+....+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~----~V~v~-e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~ 208 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGH----AVTIF-EAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGV 208 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-ecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 4456899999999999999999999999 89999 7532 2334455567653211
Q ss_pred -------chhhhccCCEEEEeeC
Q 024121 65 -------NNAVVEYSDVVVFSVK 80 (272)
Q Consensus 65 -------~~~~~~~aDivil~v~ 80 (272)
..+.-...|+||+++-
T Consensus 209 ~~~~~~~~~~~~~~~D~Vi~AtG 231 (564)
T PRK12771 209 RVGEDITLEQLEGEFDAVFVAIG 231 (564)
T ss_pred EECCcCCHHHHHhhCCEEEEeeC
Confidence 1222346899999983
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.031 Score=49.89 Aligned_cols=69 Identities=9% Similarity=0.189 Sum_probs=48.2
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHc-------Cceee-cC------chhhh
Q 024121 6 IPAESFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESI-------GVKVL-SD------NNAVV 69 (272)
Q Consensus 6 ~~~~~~~IgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~-------g~~~~-~~------~~~~~ 69 (272)
.+.+.|||.|.|. |-+|+.+++.|++. |+ +|.+. +|+.++...+... +++.. .| ..+++
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~----~V~~l-~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~ 84 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPH----KVLAL-DVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLI 84 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCC----EEEEE-ecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHh
Confidence 4455689999985 99999999999998 58 99999 8877665544321 22221 11 23456
Q ss_pred ccCCEEEEee
Q 024121 70 EYSDVVVFSV 79 (272)
Q Consensus 70 ~~aDivil~v 79 (272)
+++|+||=+.
T Consensus 85 ~~~d~ViHlA 94 (386)
T PLN02427 85 KMADLTINLA 94 (386)
T ss_pred hcCCEEEEcc
Confidence 6899988654
|
|
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.021 Score=47.61 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=56.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-----HHHHH-cCceeecCc-hhhhccCCEEEEe
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-----DAFES-IGVKVLSDN-NAVVEYSDVVVFS 78 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~-----~~l~~-~g~~~~~~~-~~~~~~aDivil~ 78 (272)
...+-+++|+|+ |.+|+++++-|..++. .+... -|+.+.. ..+.+ .|..+..++ .+.....++|+++
T Consensus 164 dlsqatvaivGa~G~Ia~~Iar~la~~~~----~~~ll-~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vA 238 (351)
T COG5322 164 DLSQATVAIVGATGDIASAIARWLAPKVG----VKELL-LRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVA 238 (351)
T ss_pred CHHHCeEEEecCCchHHHHHHHHhccccC----EEEEe-cccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEe
Confidence 344568999998 9999999998887765 55566 6665443 33333 343332333 3445566677777
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
..|.-.. +.. .+++|+..|+| .|.+.
T Consensus 239 s~~~g~~-I~p---q~lkpg~~ivD--~g~P~ 264 (351)
T COG5322 239 SMPKGVE-IFP---QHLKPGCLIVD--GGYPK 264 (351)
T ss_pred ecCCCce-ech---hhccCCeEEEc--CCcCc
Confidence 6443321 222 23689988886 45443
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.13 Score=42.74 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=34.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
|+|-|+|. |.+|.++++.|.+.|+ +|.+. +|++++.+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH----KVIAT-GRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHH
Confidence 57888885 9999999999999999 99999 99988766554
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.071 Score=45.67 Aligned_cols=73 Identities=19% Similarity=0.305 Sum_probs=54.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhC----CCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee-C
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKS----GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-K 80 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~----g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v-~ 80 (272)
....+++.|||- ...|.+++.-|.+. +. .|+++ .... .+..+.+++||+||.++ +
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~a----TVtvc-hs~T--------------~~l~~~~~~ADIvIsAvGk 214 (297)
T PRK14167 154 DTEGADVVVVGRSDIVGKPMANLLIQKADGGNA----TVTVC-HSRT--------------DDLAAKTRRADIVVAAAGV 214 (297)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHhcCccCCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCC
Confidence 346689999988 66899999998876 55 88888 5432 24567789999999999 5
Q ss_pred cccHHHHHHHhchhcCCCCEEEEE
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|..+.. ..+++|.+||++
T Consensus 215 p~~i~~------~~ik~gaiVIDv 232 (297)
T PRK14167 215 PELIDG------SMLSEGATVIDV 232 (297)
T ss_pred cCccCH------HHcCCCCEEEEc
Confidence 554332 235799999986
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.053 Score=46.14 Aligned_cols=62 Identities=21% Similarity=0.181 Sum_probs=44.0
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee----ecC---chhhh------cc-CCEEE
Q 024121 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV----LSD---NNAVV------EY-SDVVV 76 (272)
Q Consensus 12 ~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~----~~~---~~~~~------~~-aDivi 76 (272)
+|.|+|+ |.+|+.+++.|.+.|+ +|.+. .|++++... .++.. ..| ..+++ +. +|.||
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~----~V~~~-~R~~~~~~~---~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~ 72 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV----PFLVA-SRSSSSSAG---PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVY 72 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC----cEEEE-eCCCccccC---CCCccccccCCCHHHHHHHHhcccCcCCceeEEE
Confidence 4788877 9999999999999999 99999 999875431 22211 012 22333 45 89999
Q ss_pred EeeCc
Q 024121 77 FSVKP 81 (272)
Q Consensus 77 l~v~~ 81 (272)
++.++
T Consensus 73 ~~~~~ 77 (285)
T TIGR03649 73 LVAPP 77 (285)
T ss_pred EeCCC
Confidence 88764
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.074 Score=45.42 Aligned_cols=77 Identities=12% Similarity=0.188 Sum_probs=54.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.|+.....|+++ +... .+..+.+++||+||.++. |..+
T Consensus 154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvc-hs~T--------------~nl~~~~~~ADIvIsAvGkp~~i 218 (293)
T PRK14185 154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVC-HSRS--------------KNLKKECLEADIIIAALGQPEFV 218 (293)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEe-cCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 456789999988 6789999999988741001178888 5432 245677889999999994 5543
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+|||+
T Consensus 219 ~~------~~vk~gavVIDv 232 (293)
T PRK14185 219 KA------DMVKEGAVVIDV 232 (293)
T ss_pred CH------HHcCCCCEEEEe
Confidence 31 236799999986
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.11 Score=42.90 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=51.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~ 84 (272)
+++++.|.|. |.+|..+++.|++.|+ +|++. +|++++.+.+.+. ..+ ...++.++.+. ++.+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~~~~~~ 70 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW----DLALV-ARSQDALEALAAE-------LRS--TGVKAAAYSIDLSNPEAI 70 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHh--CCCcEEEEEccCCCHHHH
Confidence 3467888875 9999999999999999 99999 9998766554321 001 11234444332 3345
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
..+++.+.....+=..+|++.
T Consensus 71 ~~~~~~~~~~~~~id~lv~~a 91 (241)
T PRK07454 71 APGIAELLEQFGCPDVLINNA 91 (241)
T ss_pred HHHHHHHHHHcCCCCEEEECC
Confidence 555655544333334667654
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.19 Score=42.46 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=36.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
++.+++-|.|. |-+|..+++.|.+.|+ +|.+. +|++++.+...
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~ 48 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA----AVMIV-GRNPDKLAAAA 48 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHH
Confidence 45688999986 9999999999999999 99999 89887665443
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.024 Score=49.09 Aligned_cols=64 Identities=13% Similarity=0.195 Sum_probs=46.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-------cCchhhhccCCEEEEee
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDivil~v 79 (272)
|+|.|.|. |-+|+.++..|.+.|+ +|.+. +|++++...+...++... .+..++++++|+||-+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE----EVRVL-VRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC----EEEEE-EecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 57899975 9999999999999999 99999 888765444433343321 12234566889998775
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.04 Score=50.08 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=45.7
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HHH---H-HH-HcCceeec-CchhhhccCCEEEEee
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRD---A-FE-SIGVKVLS-DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~---~-l~-~~g~~~~~-~~~~~~~~aDivil~v 79 (272)
||.|||.|..|.++|+.|.+.|+ +|+++ |..+. ... . +. ..|+.+.. ...+.+.++|+||..-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~----~V~~s-D~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGA----EVTVT-DLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCC----EEEEE-eCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECC
Confidence 58999999999999999999999 99999 86543 111 1 22 24776532 2244567899988874
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.095 Score=43.06 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=35.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
.++|.|+|. |.+|..+++.|.+.|+ +|.+. +|++++.+++.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~----~V~~~-~r~~~~~~~~~ 47 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY----KVAIT-ARDQKELEEAA 47 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC----EEEEe-eCCHHHHHHHH
Confidence 467889975 9999999999999999 99999 99987766553
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.13 Score=43.13 Aligned_cols=64 Identities=20% Similarity=0.194 Sum_probs=51.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-------cCchhhhccCCEEEEeeC
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDivil~v~ 80 (272)
|+|.+.|. |.+|+.+++.|.+.|+ +|.+. .|++++...+. .++.+. .+....+++.|.++++.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~----~v~~~-~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~ 72 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH----EVRAA-VRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISG 72 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC----EEEEE-EeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEec
Confidence 57888865 9999999999999999 99999 99999988877 555542 223456778999998887
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.068 Score=48.04 Aligned_cols=74 Identities=19% Similarity=0.296 Sum_probs=51.5
Q ss_pred CCCCeEEEEcccHHHHHH--HHHHHhCCCCCCCcEEEEeCCCHHHHH-------HHHH-cC----ceeecCchhhhccCC
Q 024121 8 AESFILGFIGAGKMAESI--AKGVAKSGVLPPDRICTAVHSNLKRRD-------AFES-IG----VKVLSDNNAVVEYSD 73 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~l--a~~l~~~g~~~~~~V~v~~~r~~~~~~-------~l~~-~g----~~~~~~~~~~~~~aD 73 (272)
|+.+||+|||.|.-..+- ..-|...--++..++.++ |.++++.+ ++.+ .| +..+.|..+++++||
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~-Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAd 79 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALY-DIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGAD 79 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEE-eCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCC
Confidence 467899999999887653 222223333455689999 99988765 2222 33 345678899999999
Q ss_pred EEEEeeCcc
Q 024121 74 VVVFSVKPQ 82 (272)
Q Consensus 74 ivil~v~~~ 82 (272)
+|+.++.+.
T Consensus 80 fVi~~~rvG 88 (442)
T COG1486 80 FVITQIRVG 88 (442)
T ss_pred EEEEEEeeC
Confidence 999998554
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.021 Score=47.91 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=40.2
Q ss_pred cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhc-cCCEEE
Q 024121 17 GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVV 76 (272)
Q Consensus 17 G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDivi 76 (272)
|+|.+|+++...|.+.|| +|++. .|++.+.+......+...+...+... .+|+||
T Consensus 6 gTGlIG~~L~~~L~~~gh----~v~il-tR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavI 61 (297)
T COG1090 6 GTGLIGRALTARLRKGGH----QVTIL-TRRPPKASQNLHPNVTLWEGLADALTLGIDAVI 61 (297)
T ss_pred cccchhHHHHHHHHhCCC----eEEEE-EcCCcchhhhcCccccccchhhhcccCCCCEEE
Confidence 779999999999999999 99999 99987765443333332233344444 699988
|
|
| >PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.18 Score=44.08 Aligned_cols=91 Identities=14% Similarity=0.052 Sum_probs=53.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHH----cC-----c--------------eee--c
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES----IG-----V--------------KVL--S 63 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~l~~----~g-----~--------------~~~--~ 63 (272)
+||||.|+|+||..+.+.+.+.+. .++...++. +.+.+..|.+ +| + .+. .
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~---~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPE---LEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNK 79 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCC---cEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecC
Confidence 799999999999999999886542 156554242 4555555554 22 1 111 0
Q ss_pred Cchh-hhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCC
Q 024121 64 DNNA-VVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 64 ~~~~-~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
++.+ ..++.|+||.|+....-++.... ++..|...|..++.
T Consensus 80 ~~~~~~w~gvDiVle~tG~~~s~~~a~~---hl~aGak~V~iSap 121 (334)
T PRK08955 80 AIADTDWSGCDVVIEASGVMKTKALLQA---YLDQGVKRVVVTAP 121 (334)
T ss_pred ChhhCCccCCCEEEEccchhhcHHHHHH---HHHCCCEEEEECCC
Confidence 2222 13479999999866654444432 23455555555443
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.12 Score=43.16 Aligned_cols=85 Identities=12% Similarity=0.111 Sum_probs=53.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Cccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~ 83 (272)
++.+++.|.|. |.+|.++++.|++.|+ +|.+. +|++++.+.+.+. ..+ ...++.++.. .++.
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------i~~--~~~~~~~~~~D~~~~~~ 73 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA----EVILN-GRDPAKLAAAAES-------LKG--QGLSAHALAFDVTDHDA 73 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHH-------HHh--cCceEEEEEccCCCHHH
Confidence 35578989976 9999999999999999 99999 9998766544320 000 0123333332 2345
Q ss_pred HHHHHHHhchhcCCCCEEEEEcC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+.++++++...+.+-..+|+..+
T Consensus 74 ~~~~~~~~~~~~~~~d~li~~ag 96 (255)
T PRK07523 74 VRAAIDAFEAEIGPIDILVNNAG 96 (255)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66666665544444456776543
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.14 Score=42.44 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=52.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
..+++.|+|. |.+|..+++.|.+.|+ +|++. +|++++.+.+... + .. ..++.++.. .++.+
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~------~~---~~~~~~~~~D~~~~~~~ 68 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA----RVVVT-DRNEEAAERVAAE-I------LA---GGRAIAVAADVSDEADV 68 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-H------hc---CCeEEEEECCCCCHHHH
Confidence 4578999986 9999999999999999 99999 9998776554331 0 00 223333333 23445
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
..++.++.+...+=..||++.
T Consensus 69 ~~~~~~~~~~~~~~d~vi~~a 89 (251)
T PRK07231 69 EAAVAAALERFGSVDILVNNA 89 (251)
T ss_pred HHHHHHHHHHhCCCCEEEECC
Confidence 556655543333334666654
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.28 Score=44.58 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=67.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeC----------CCHHHHHHHHH-c-----------CceeecC
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH----------SNLKRRDAFES-I-----------GVKVLSD 64 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~----------r~~~~~~~l~~-~-----------g~~~~~~ 64 (272)
..+.+||+|.|.|++|+..++.|.+.|. +|+...| .+.+.+.+.++ . +.... +
T Consensus 229 ~l~g~rVaIqGfGnVG~~~A~~L~~~Ga----kVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~ 303 (445)
T PRK09414 229 SFEGKRVVVSGSGNVAIYAIEKAQQLGA----KVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-E 303 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-C
Confidence 3466899999999999999999999998 7664425 45554443332 1 22221 3
Q ss_pred chhhhc-cCCEEEEeeCcccH-HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCc
Q 024121 65 NNAVVE-YSDVVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNT 129 (272)
Q Consensus 65 ~~~~~~-~aDivil~v~~~~~-~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~ 129 (272)
.+++.. +|||++-|-....+ .+-..++.+ ..-++|+...++-....-.+.+. .+-+-+.|..
T Consensus 304 ~~~i~~~d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~t~~A~~~L~-~rGI~~vPD~ 367 (445)
T PRK09414 304 GGSPWSVPCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPSTPEAIEVFL-EAGVLFAPGK 367 (445)
T ss_pred CccccccCCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCCCHHHHHHHH-HCCcEEECch
Confidence 334333 79999999876554 344445532 13457776655433333333443 2334445553
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.13 Score=44.22 Aligned_cols=82 Identities=15% Similarity=0.179 Sum_probs=51.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~ 85 (272)
.++|-|.|. |-+|.++++.|.+.|+ +|.+. +|+.++.+.+.+. ..+ ...++.++.+ .++.+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~----~Vi~~-~R~~~~l~~~~~~-------l~~--~~~~~~~~~~Dl~d~~~v~ 105 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA----TVVAV-ARREDLLDAVADR-------ITR--AGGDAMAVPCDLSDLDAVD 105 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHH
Confidence 367888876 9999999999999999 99999 9998776655431 000 0122323322 234566
Q ss_pred HHHHHhchhcCCCCEEEEEc
Q 024121 86 DVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~ 105 (272)
++++.+...+.+=.++|++.
T Consensus 106 ~~~~~~~~~~g~id~li~~A 125 (293)
T PRK05866 106 ALVADVEKRIGGVDILINNA 125 (293)
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 66666554443435677654
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.031 Score=51.30 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024121 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (272)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r 46 (272)
|..-+.++..++|+|||+|.-|-+.|+.|.+.|+ +|+++ .+
T Consensus 1 ~~~~~~~~~~~~VaIIGAG~aGL~aA~~l~~~G~----~v~vf-E~ 41 (461)
T PLN02172 1 MAPAQNPINSQHVAVIGAGAAGLVAARELRREGH----TVVVF-ER 41 (461)
T ss_pred CCCcccCCCCCCEEEECCcHHHHHHHHHHHhcCC----eEEEE-ec
Confidence 4444566667899999999999999999999998 77777 54
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.13 Score=42.46 Aligned_cols=84 Identities=14% Similarity=0.098 Sum_probs=53.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~ 84 (272)
+.+++.|+|. |.+|..+++.|.+.|+ +|.+. +|++++.+.+.+. ... ...++.++.+. ++.+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~~-------~~~--~~~~~~~~~~Dl~~~~~~ 71 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA----TVAFN-DGLAAEARELAAA-------LEA--AGGRAHAIAADLADPASV 71 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHH
Confidence 4578889986 9999999999999999 99999 9988776654321 000 12234444432 3345
Q ss_pred HHHHHHhchhcCCCCEEEEEcC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+.+++++.....+-..+|++.+
T Consensus 72 ~~~~~~~~~~~~~id~vi~~ag 93 (250)
T PRK12939 72 QRFFDAAAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 5566555443333346776643
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.065 Score=49.09 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=46.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HH----HHHHHcCceeecC--ch-----hhhccCCEEEEee
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RR----DAFESIGVKVLSD--NN-----AVVEYSDVVVFSV 79 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~----~~l~~~g~~~~~~--~~-----~~~~~aDivil~v 79 (272)
||.|||.|..|.+.|+.|.+.|+ +|.++ |+++. .. ..+.+.|+.+... .. +...+.|+|+.+-
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~----~V~~~-D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW----EVVVS-DRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 68999999999999999999999 99999 87542 22 2355567765321 11 2456799998864
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.028 Score=50.30 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=32.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (272)
++.++|.|||.|..|.++|..|.+.|+ +|+++ +|.++
T Consensus 2 ~~~~~V~IvGaGiaGl~~A~~L~~~g~----~v~v~-Er~~~ 38 (396)
T PRK08163 2 TKVTPVLIVGGGIGGLAAALALARQGI----KVKLL-EQAAE 38 (396)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhCCC----cEEEE-eeCcc
Confidence 345789999999999999999999999 99999 77653
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.16 Score=42.85 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=35.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
+.++|-|.|+ |.+|..+++.|.+.|+ +|.+. +|++++.+++.
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~ 46 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALGA----RVAIG-DLDEALAKETA 46 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHH
Confidence 4567888876 9999999999999999 99999 99988776554
|
|
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.1 Score=38.40 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=59.4
Q ss_pred eEE-EEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc--HHHHH
Q 024121 12 ILG-FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV--VKDVA 88 (272)
Q Consensus 12 ~Ig-iIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~--~~~v~ 88 (272)
|++ |.|.|..|..-+..|...|. .|++. ..+|-.+-+..=.|.++. +.+|+++..|+++.++-..+ ..+-+
T Consensus 215 Kv~Vv~GYGdVGKgCaqaLkg~g~----~VivT-EiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTGc~dii~~~H~ 288 (434)
T KOG1370|consen 215 KVAVVCGYGDVGKGCAQALKGFGA----RVIVT-EIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTGCKDIITGEHF 288 (434)
T ss_pred cEEEEeccCccchhHHHHHhhcCc----EEEEe-ccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccCCcchhhHHHH
Confidence 444 55999999999999999998 99999 888754333333788874 67899999999999985443 34444
Q ss_pred HHhchhcCCCCEEEE
Q 024121 89 MQIRPLLSRKKLLVS 103 (272)
Q Consensus 89 ~~l~~~l~~~~~iis 103 (272)
++ ++.+.++++
T Consensus 289 ~~----mk~d~IvCN 299 (434)
T KOG1370|consen 289 DQ----MKNDAIVCN 299 (434)
T ss_pred Hh----CcCCcEEec
Confidence 44 445666654
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.22 Score=43.60 Aligned_cols=87 Identities=17% Similarity=0.156 Sum_probs=57.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecC-----chhhhc---cCCEEEEeeCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD-----NNAVVE---YSDVVVFSVKP 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~-----~~~~~~---~aDivil~v~~ 81 (272)
..+|.|+|+|.+|...+..+...|. .+|++. ++++++.+.+++.|+...-+ ..+... ..|+||-|+..
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~---~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~ 245 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGA---AEIVCA-DVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH 245 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---cEEEEE-eCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC
Confidence 4689999999999988887777776 247788 99999988888788643211 112211 36888888754
Q ss_pred -ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 -QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 -~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
..+...++ .++++..++..
T Consensus 246 ~~~~~~~~~----~l~~~G~iv~~ 265 (343)
T PRK09880 246 PSSINTCLE----VTRAKGVMVQV 265 (343)
T ss_pred HHHHHHHHH----HhhcCCEEEEE
Confidence 23444433 34455566644
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.27 Score=40.26 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=51.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKD 86 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~~~ 86 (272)
+.++|.|.|. |.+|..+++.|.+.|+ +|.+. +|++++..+..+. .. ....+++..-+. .+.+..
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~~-~~--------~~~~~~~~~D~~~~~~~~~ 71 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGA----RVALI-GRGAAPLSQTLPG-VP--------ADALRIGGIDLVDPQAARR 71 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCC----eEEEE-eCChHhHHHHHHH-Hh--------hcCceEEEeecCCHHHHHH
Confidence 4578999976 9999999999999999 99999 9988665443220 00 011223322232 345666
Q ss_pred HHHHhchhcCCCCEEEEEc
Q 024121 87 VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~ 105 (272)
+++++.....+-..|++..
T Consensus 72 ~~~~~~~~~~~~d~vi~~a 90 (239)
T PRK12828 72 AVDEVNRQFGRLDALVNIA 90 (239)
T ss_pred HHHHHHHHhCCcCEEEECC
Confidence 6666554443445666653
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.047 Score=47.36 Aligned_cols=95 Identities=19% Similarity=0.175 Sum_probs=56.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCC-C-----CCCcEE-EEeCCCHHHHHHHHHcC-ceeecCc-----hhhhc--cC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGV-L-----PPDRIC-TAVHSNLKRRDAFESIG-VKVLSDN-----NAVVE--YS 72 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~-~-----~~~~V~-v~~~r~~~~~~~l~~~g-~~~~~~~-----~~~~~--~a 72 (272)
|+.++|+++|+|.+|+.+++-|.+++- + ...+|. +. +|+....+.+.-.+ .....+. .+.+. +.
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVA-DRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDI 79 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEE-eccchhcccccccchhhheecccccccHhhhccccC
Confidence 456899999999999999999987532 0 011232 33 66554433111111 1122222 33333 56
Q ss_pred CEEEEeeCc--ccHHHHHHHhchhcCCCCEEEEE
Q 024121 73 DVVVFSVKP--QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 73 Divil~v~~--~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|+|+-+++. ...++ ++.+...+..++.||+.
T Consensus 80 dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTa 112 (333)
T COG0460 80 DVVVELVGGDVEPAEP-ADLYLKALENGKHVVTA 112 (333)
T ss_pred CEEEecCcccCCchhh-HHHHHHHHHcCCeEECC
Confidence 789988865 34555 56666777888888854
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.16 Score=42.97 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=38.1
Q ss_pred CCCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024121 1 MDAFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (272)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l 54 (272)
|.-+++..+.+++.|.|+ |-+|.++++.|.+.|+ +|.+. .|+.++.+.+
T Consensus 1 ~~~~~~~~~~~~vlVtGa~g~iG~~la~~L~~~G~----~V~~~-~r~~~~~~~~ 50 (274)
T PRK07775 1 MPRFEPHPDRRPALVAGASSGIGAATAIELAAAGF----PVALG-ARRVEKCEEL 50 (274)
T ss_pred CCCCCCCCCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence 344555555677888875 9999999999999999 99988 8887665443
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.082 Score=44.84 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=37.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG 58 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g 58 (272)
++++-|.|+ |.+|.++++.|.+.|+ +|.+. +|++++.+.+.+.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~----~Vi~~-~r~~~~~~~l~~~~ 48 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW----RVFAT-CRKEEDVAALEAEG 48 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHCC
Confidence 457888887 9999999999999999 99999 99988877765543
|
|
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.032 Score=48.07 Aligned_cols=92 Identities=10% Similarity=0.122 Sum_probs=59.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCC---HHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN---LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~---~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~ 84 (272)
..++|+| |+ |..|..|...|.+.++ +..+++++ ... ..+.-.+....+.+..-..+..++.|++|. .+.+..
T Consensus 2 ~~~~iAi-GATg~VG~~~l~~Leer~f-pv~~l~l~-~s~~~s~gk~i~f~g~~~~V~~l~~~~f~~vDia~f-ag~~~s 77 (322)
T PRK06901 2 ATLNIAI-AAEFELSEKLLEALEQSDL-EIEQISIV-EIEPFGEEQGIRFNNKAVEQIAPEEVEWADFNYVFF-AGKMAQ 77 (322)
T ss_pred CcceEEE-ecCcHHHHHHHHHHHhcCC-chhheeec-ccccccCCCEEEECCEEEEEEECCccCcccCCEEEE-cCHHHH
Confidence 4578999 98 9999999999999887 66667776 322 111111111122232222345688999999 777766
Q ss_pred HHHHHHhchhcCCCCEEEEEcCC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
++...... ..|.+|||.++.
T Consensus 78 ~~~ap~a~---~aG~~VIDnSsa 97 (322)
T PRK06901 78 AEHLAQAA---EAGCIVIDLYGI 97 (322)
T ss_pred HHHHHHHH---HCCCEEEECChH
Confidence 66655433 578899987653
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.19 Score=43.08 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=45.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCch
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNN 66 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~ 66 (272)
...+++|.|+|..|.+.+.+-...|. ++|... |.|+++.++.++.|+.-+-++.
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GA---srIIgv-DiN~~Kf~~ak~fGaTe~iNp~ 245 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGA---SRIIGV-DINPDKFEKAKEFGATEFINPK 245 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCc---ccEEEE-ecCHHHHHHHHhcCcceecChh
Confidence 34689999999999999999998886 589999 9999999999988876444443
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.18 Score=42.63 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=63.0
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEE-eCCCHH--HHHHHHHcCcee------ecCchhhhcc-CC-EEEEee
Q 024121 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTA-VHSNLK--RRDAFESIGVKV------LSDNNAVVEY-SD-VVVFSV 79 (272)
Q Consensus 12 ~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~-~~r~~~--~~~~l~~~g~~~------~~~~~~~~~~-aD-ivil~v 79 (272)
||.|.|+ |+||+..++.+.+.++ ++... .++... ....+...++.+ ..++.++... +| ++|=-+
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~----~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT 77 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGL----EIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT 77 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCC----EEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC
Confidence 7889998 9999999999888777 76643 143321 222222234555 5566666665 88 766666
Q ss_pred CcccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHh
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~ 117 (272)
.|+.+.+.+.... ..+..+|.-++|.+.+++++..
T Consensus 78 ~P~~~~~n~~~~~---~~gv~~ViGTTG~~~~~~~~l~ 112 (275)
T TIGR02130 78 HPSAVNDNAAFYG---KHGIPFVMGTTGGDREALAKLV 112 (275)
T ss_pred ChHHHHHHHHHHH---HCCCCEEEcCCCCCHHHHHHHH
Confidence 6777666654433 3445556566788887776653
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.066 Score=44.65 Aligned_cols=92 Identities=12% Similarity=0.013 Sum_probs=63.5
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH------cCc----eeecCchhhhccCCEEEEeeCc
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES------IGV----KVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~------~g~----~~~~~~~~~~~~aDivil~v~~ 81 (272)
-..++|.|..+........+.-- .-.+|.+| +|+++.++++++ ..+ ..+.+.++++..+|+|+.|++.
T Consensus 140 vL~i~GsG~qA~~hi~ih~~~~p-slreVrIw-nht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls 217 (333)
T KOG3007|consen 140 VLTIFGSGLQAFWHIYIHIKLIP-SLREVRIW-NHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS 217 (333)
T ss_pred EEEEEcccchhHHHHHHHHHhcc-cceEEEee-cCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc
Confidence 46789999999988777666421 13489999 999998887766 123 2356678889999999999864
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
.. .++ ....++|| +-|+..++.+.
T Consensus 218 te--Pil--fgewlkpg-thIdlVGsf~p 241 (333)
T KOG3007|consen 218 TE--PIL--FGEWLKPG-THIDLVGSFKP 241 (333)
T ss_pred CC--cee--eeeeecCC-ceEeeeccCCc
Confidence 32 111 11235677 56777777655
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.11 Score=43.24 Aligned_cols=84 Identities=18% Similarity=0.175 Sum_probs=52.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.+++-|.|. |.+|..++..|++.|+ +|.+. +|++++.+.+.+. ..+ ..+++.++-. .++.+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~~-------~~~--~~~~~~~~~~Dl~~~~~~ 71 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA----AVAIA-DLNQDGANAVADE-------INK--AGGKAIGVAMDVTNEDAV 71 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----eEEEE-eCChHHHHHHHHH-------HHh--cCceEEEEECCCCCHHHH
Confidence 4567888877 9999999999999999 99999 9998766554431 000 0123333332 23345
Q ss_pred HHHHHHhchhcCCCCEEEEEcC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~ 106 (272)
.++++++.....+-..+|++.+
T Consensus 72 ~~~~~~~~~~~~~~d~vi~~ag 93 (262)
T PRK13394 72 NAGIDKVAERFGSVDILVSNAG 93 (262)
T ss_pred HHHHHHHHHHcCCCCEEEECCc
Confidence 5666655444444456777643
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.14 Score=44.28 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=53.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHH----HHHHH--cCceee----
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRR----DAFES--IGVKVL---- 62 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~----~~l~~--~g~~~~---- 62 (272)
||.|||+|.+|+.++++|...|. .+++++ |.+. .|+ +.+.+ ..+.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv---g~ItIv-D~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~ 76 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF---GEIHII-DLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHA 76 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC---CeEEEE-cCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEec
Confidence 68999999999999999999997 367777 5422 122 22222 123221
Q ss_pred --cC---chhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEE
Q 024121 63 --SD---NNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 63 --~~---~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis 103 (272)
.+ ..+.+++.|+|+.|+.....+..+.++... .+..+|+
T Consensus 77 ~i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~--~~ip~I~ 120 (312)
T cd01489 77 NIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLA--ADVPLIE 120 (312)
T ss_pred cCCCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHH--CCCCEEE
Confidence 11 235678999999998665555555554422 3344554
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.24 Score=43.18 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=57.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCc-hhhhccCCEEEEeeCcccHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN-NAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~-~~~~~~aDivil~v~~~~~~~v~ 88 (272)
..++.|.|+|.+|...+......|. .|++. ++++++.+.+++.|+...-+. ....+..|+++.+.... +.+
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~----~vi~~-~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~---~~~ 237 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGA----TVHVM-TRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG---GLV 237 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCC----eEEEE-eCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH---HHH
Confidence 4689999999999988877777787 88888 899999888888887533221 11123578877776432 233
Q ss_pred HHhchhcCCCCEEEEE
Q 024121 89 MQIRPLLSRKKLLVSV 104 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~ 104 (272)
......++++..++..
T Consensus 238 ~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 238 PPALEALDRGGVLAVA 253 (329)
T ss_pred HHHHHhhCCCcEEEEE
Confidence 3333445566666643
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.14 Score=42.76 Aligned_cols=83 Identities=17% Similarity=0.146 Sum_probs=53.0
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Cccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~ 83 (272)
++.+++.|+|. |.+|..+++.|.+.|+ +|.+. +|+++..+.+.+.. .+..+.++.. .++.
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~~-----------~~~~~~~~~~D~~~~~~ 72 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGA----RVHVC-DVSEAALAATAARL-----------PGAKVTATVADVADPAQ 72 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHH-----------hcCceEEEEccCCCHHH
Confidence 45578999976 9999999999999999 99999 99887665554311 1112233322 2334
Q ss_pred HHHHHHHhchhcCCCCEEEEEcC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+.++++++...+.+-..||+..+
T Consensus 73 ~~~~~~~~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 73 VERVFDTAVERFGGLDVLVNNAG 95 (264)
T ss_pred HHHHHHHHHHHhCCCCEEEECCC
Confidence 55555555444444456666543
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.085 Score=46.48 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=48.9
Q ss_pred CCCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCceee-cC------chhhhcc
Q 024121 5 PIPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGVKVL-SD------NNAVVEY 71 (272)
Q Consensus 5 ~~~~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~~~~-~~------~~~~~~~ 71 (272)
.+..+.|||.|.| +|-+|+.+++.|++.|+ +|.+. +|+.++.+.+.. .++... .| ..+++++
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGY----TVHAT-LRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKG 79 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcC
Confidence 3455778999998 59999999999999999 99988 888765544332 122221 12 2344567
Q ss_pred CCEEEEee
Q 024121 72 SDVVVFSV 79 (272)
Q Consensus 72 aDivil~v 79 (272)
.|.||-+.
T Consensus 80 ~d~Vih~A 87 (353)
T PLN02896 80 CDGVFHVA 87 (353)
T ss_pred CCEEEECC
Confidence 89888665
|
|
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.22 Score=41.62 Aligned_cols=100 Identities=15% Similarity=0.091 Sum_probs=64.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCC---C----CCcEEEEeCCC-----------HHHHHHHHH--cCceeecCch
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVL---P----PDRICTAVHSN-----------LKRRDAFES--IGVKVLSDNN 66 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~---~----~~~V~v~~~r~-----------~~~~~~l~~--~g~~~~~~~~ 66 (272)
.....||.|.|+|.-|..+++.|...+.- + ..+++++ |+. +.+ +.+.+ ..-....++.
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~v-D~~Gll~~~r~~l~~~~-~~~~~~~~~~~~~~~L~ 99 (254)
T cd00762 22 KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXV-DRKGLLVKNRKETCPNE-YHLARFANPERESGDLE 99 (254)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEE-CCCCeEeCCCCccCHHH-HHHHHHcCcccccCCHH
Confidence 34567999999999999999999886530 0 1256666 552 111 12111 1112235788
Q ss_pred hhhc--cCCEEEEee--CcccHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 67 AVVE--YSDVVVFSV--KPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 67 ~~~~--~aDivil~v--~~~~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|+++ ++|++|=.. +.-..+++++.+..+. +..+|.-++++.+
T Consensus 100 eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~-~~PIIFaLSNPt~ 145 (254)
T cd00762 100 DAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEIN-ERPVIFALSNPTS 145 (254)
T ss_pred HHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcC-CCCEEEECCCcCC
Confidence 8888 889887443 3334678888877653 5667888887765
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.25 Score=41.39 Aligned_cols=86 Identities=12% Similarity=0.097 Sum_probs=53.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Cccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~ 83 (272)
++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+...+. ..+.....++.++.+ .++.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~ 73 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA----SVAIC-GRDEERLASAEAR-------LREKFPGARLLAARCDVLDEAD 73 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHH-------HHhhCCCceEEEEEecCCCHHH
Confidence 34566777776 8899999999999999 99999 9998776654321 011011223433433 2345
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
+.++++++...+.+=.++|++.
T Consensus 74 v~~~~~~~~~~~g~id~li~~A 95 (265)
T PRK07062 74 VAAFAAAVEARFGGVDMLVNNA 95 (265)
T ss_pred HHHHHHHHHHhcCCCCEEEECC
Confidence 6666666654443334677653
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.19 Score=41.84 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=34.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
.++|-|.|. |.+|.++++.|.+.|+ +|.++ +|++++.+.+.
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~ 52 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGA----HVLVN-GRNAATLEAAV 52 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHH
Confidence 467888866 9999999999999999 99999 99987655443
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.21 Score=41.94 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=53.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEe--e-Cccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFS--V-KPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~--v-~~~~ 83 (272)
++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ... ...++.++. + .++.
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~----~Vi~~-~r~~~~~~~~~~~-------l~~--~~~~~~~~~~D~~~~~~ 73 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA----DVLIA-ARTESQLDEVAEQ-------IRA--AGRRAHVVAADLAHPEA 73 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHH
Confidence 45678888876 7899999999999999 99999 9998776554431 000 011222222 2 2345
Q ss_pred HHHHHHHhchhcCCCCEEEEEcC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+..+++++...+.+=..+|++.+
T Consensus 74 ~~~~~~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 74 TAGLAGQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666544434357777643
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.27 Score=41.05 Aligned_cols=41 Identities=20% Similarity=0.105 Sum_probs=35.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
+++-|+|. |.+|.++++.|.+.|+ +|.+. +|++++.+.+.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW----RVGAY-DINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHH
Confidence 56888875 9999999999999999 99999 999887766644
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.16 Score=42.31 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=51.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.++|-|.|. |.+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ... ...++.++.+ .++.+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~~~~~~ 69 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA----DVVLA-ARTAERLDEVAAE-------IDD--LGRRALAVPTDITDEDQC 69 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHH-------HHH--hCCceEEEecCCCCHHHH
Confidence 4567888875 9999999999999999 99999 9998766554321 000 0122333333 23345
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
..+++++...+.+-..+|++.
T Consensus 70 ~~~~~~~~~~~g~~d~vi~~a 90 (258)
T PRK07890 70 ANLVALALERFGRVDALVNNA 90 (258)
T ss_pred HHHHHHHHHHcCCccEEEECC
Confidence 666665544333334666654
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.091 Score=43.71 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=36.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI 57 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~ 57 (272)
++|.|.|+ |.+|.++++.|.+.|+ +|.+. +|++++.+.+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~----~v~~~-~r~~~~~~~~~~~ 45 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY----RVLAA-CRKPDDVARMNSL 45 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHhHHHHhC
Confidence 47899998 9999999999999999 99999 9998877655443
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.12 Score=46.96 Aligned_cols=64 Identities=19% Similarity=0.109 Sum_probs=45.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH--HHHHHHcCceeec--CchhhhccCCEEEEee
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--RDAFESIGVKVLS--DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~--~~~l~~~g~~~~~--~~~~~~~~aDivil~v 79 (272)
.++|.|||.|..|.+.++.|.+.|+ +|+++ |..+.. .+++. .|+.+.. ...+.+++.|+||..-
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~----~v~~~-D~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~d~vv~sp 73 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGV----TPRVI-DTRITPPGLDKLP-ENVERHTGSLNDEWLLAADLIVASP 73 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCC----eEEEE-cCCCCchhHHHHh-cCCEEEeCCCCHHHhcCCCEEEECC
Confidence 5689999999999999999999999 99999 864322 23443 3765532 2334466789777653
|
|
| >smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.082 Score=40.62 Aligned_cols=42 Identities=7% Similarity=0.213 Sum_probs=30.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhC-CCCCCCcEEEEeCC-CHHHHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHS-NLKRRDAFES 56 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r-~~~~~~~l~~ 56 (272)
+||+|+|+|+||..+++.+.+. +. ++...+++ +++....+.+
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~----~lvai~d~~~~~~~a~ll~ 44 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDI----EVVAINDLTDPETLAHLLK 44 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC----EEEEeecCCCHHHHHHHhc
Confidence 5899999999999999988754 33 66554364 6666666655
|
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. |
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.15 Score=42.90 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=49.1
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee-CcccHH
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KPQVVK 85 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v-~~~~~~ 85 (272)
++.++|-|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.. .+..++..=+ .++.++
T Consensus 2 ~~~~~vlVtGasg~iG~~~a~~l~~~g~----~V~~~-~r~~~~~~~~---------------~~~~~~~~D~~d~~~~~ 61 (270)
T PRK06179 2 SNSKVALVTGASSGIGRATAEKLARAGY----RVFGT-SRNPARAAPI---------------PGVELLELDVTDDASVQ 61 (270)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCC----EEEEE-eCChhhcccc---------------CCCeeEEeecCCHHHHH
Confidence 34567888875 9999999999999999 99999 8987553211 1111111111 334566
Q ss_pred HHHHHhchhcCCCCEEEEEc
Q 024121 86 DVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~ 105 (272)
.+++++...+.+-.++|++.
T Consensus 62 ~~~~~~~~~~g~~d~li~~a 81 (270)
T PRK06179 62 AAVDEVIARAGRIDVLVNNA 81 (270)
T ss_pred HHHHHHHHhCCCCCEEEECC
Confidence 66666554444445677654
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.17 Score=46.63 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=31.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
...++|.|||.|..|.+.|..|.+.|+ +|+++ ++.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~----~V~vi-e~~ 175 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGH----KVTVF-ERA 175 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC----cEEEE-ecC
Confidence 345799999999999999999999999 99999 764
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.25 Score=41.32 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=50.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~~ 86 (272)
|++-|.|. |.+|.++++.|.+.|+ +|.+. +|++++.+++.+. + .+ ..++.++.. .++.+++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-l------~~---~~~~~~~~~Dv~d~~~~~~ 65 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA----RVVIS-SRNEENLEKALKE-L------KE---YGEVYAVKADLSDKDDLKN 65 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHH-H------Hh---cCCceEEEcCCCCHHHHHH
Confidence 57888876 8899999999999999 99999 9998776554331 0 00 012222222 2345666
Q ss_pred HHHHhchhcCCCCEEEEEc
Q 024121 87 VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~ 105 (272)
+++++...+.+=.++|+..
T Consensus 66 ~~~~~~~~~g~id~li~na 84 (259)
T PRK08340 66 LVKEAWELLGGIDALVWNA 84 (259)
T ss_pred HHHHHHHhcCCCCEEEECC
Confidence 6666654443334667653
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.42 Score=40.57 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=67.5
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhC----CCCCC----CcEEEEeCCC----------HHHHHHHHHc-CceeecCch
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKS----GVLPP----DRICTAVHSN----------LKRRDAFESI-GVKVLSDNN 66 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~----g~~~~----~~V~v~~~r~----------~~~~~~l~~~-g~~~~~~~~ 66 (272)
......||.|.|+|.-|..+++.|... |. +. .+++++ |+. .+....+.+. .-....++.
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~-~~eeA~~~i~~v-D~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~ 98 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGL-SEEEARKKIWLV-DSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLL 98 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCC-ChhhccCeEEEE-cCCCeEeCCCCcchHHHHHHHhhcCcccCCCHH
Confidence 344567999999999999999999886 64 21 367777 663 1111222221 111235788
Q ss_pred hhhc--cCCEEEEee-Ccc-cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 67 AVVE--YSDVVVFSV-KPQ-VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 67 ~~~~--~aDivil~v-~~~-~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|+++ ++|++|=+. .+. .-+++++.+..+. +..+|.-++++.+
T Consensus 99 e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~-~~PIIFaLSNPt~ 144 (279)
T cd05312 99 EVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSN-ERPIIFALSNPTS 144 (279)
T ss_pred HHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcC-CCCEEEECCCcCC
Confidence 9999 889888554 334 4578888887654 6678888888765
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.36 Score=39.94 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=53.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.+++-|.|+ |.+|..+++.|.+.|+ +|.+. .|+.+..+...+. +. ....+.++.. .++.+
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~~-~~---------~~~~~~~~~~D~~~~~~~ 68 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA----RVVVA-DRDAEAAERVAAA-IA---------AGGRAFARQGDVGSAEAV 68 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC----eEEEe-cCCHHHHHHHHHH-Hh---------cCCeEEEEEcCCCCHHHH
Confidence 4567888876 9999999999999999 99999 8987765544321 00 1122222222 33456
Q ss_pred HHHHHHhchhcCCCCEEEEEcC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~ 106 (272)
.++++++.+.+.+=..+|++.+
T Consensus 69 ~~~~~~i~~~~~~id~vi~~ag 90 (252)
T PRK06138 69 EALVDFVAARWGRLDVLVNNAG 90 (252)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 6677666554444456777643
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.21 Score=42.28 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=34.3
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
+.+++-|.| +|-+|.++++.|.+.|+ +|.++ +|+++..+.+.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~ 44 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY----LVIAT-MRNPEKQENLL 44 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHH
Confidence 345677776 59999999999999999 99999 89887765543
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.13 Score=43.92 Aligned_cols=73 Identities=14% Similarity=0.226 Sum_probs=53.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHh----CCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAK----SGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK- 80 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~----~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~- 80 (272)
....+++.|||- ...|.+++.-|.+ .+. .|+++ +.+. .+..+.+++||+||.++.
T Consensus 154 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~A----tVt~~-hs~t--------------~~l~~~~~~ADIVI~AvG~ 214 (286)
T PRK14184 154 SPAGKKAVVVGRSNIVGKPLALMLGAPGKFANA----TVTVC-HSRT--------------PDLAEECREADFLFVAIGR 214 (286)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhCCcccCCC----EEEEE-eCCc--------------hhHHHHHHhCCEEEEecCC
Confidence 445689999988 6689999999988 555 88888 5432 245677899999999994
Q ss_pred cccHHHHHHHhchhcCCCCEEEEE
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|..+.. ..++++.++||+
T Consensus 215 p~li~~------~~vk~GavVIDV 232 (286)
T PRK14184 215 PRFVTA------DMVKPGAVVVDV 232 (286)
T ss_pred CCcCCH------HHcCCCCEEEEe
Confidence 333221 234789999986
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.32 Score=40.55 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=36.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
++.++|-|+|. |.+|.++++.|.+.|+ +|.+. +|++.+.+.+.
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~----~v~~~-~r~~~~~~~~~ 48 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGA----TVVVG-DIDPEAGKAAA 48 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHH
Confidence 45678999988 9999999999999999 99999 99877655443
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.18 Score=42.13 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=52.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.+++-|.|. |.+|.++++.|.+.|+ +|++. +|++++.+.+.+. + .. ....+.++.. .++.+
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-i------~~--~~~~~~~~~~Dl~d~~~i 76 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGA----RVVLS-ARKAEELEEAAAH-L------EA--LGIDALWIAADVADEADI 76 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHH-H------Hh--cCCeEEEEEccCCCHHHH
Confidence 3477888875 9999999999999999 99999 9988766544321 0 00 0122333332 23456
Q ss_pred HHHHHHhchhcCCCCEEEEEcC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~ 106 (272)
...++++.....+=..+|++.+
T Consensus 77 ~~~~~~~~~~~~~id~vi~~ag 98 (259)
T PRK08213 77 ERLAEETLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 6666665544434457777643
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.071 Score=48.00 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=44.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhh--ccCCEEEEe--eCcc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV--EYSDVVVFS--VKPQ 82 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~--~~aDivil~--v~~~ 82 (272)
|+|.|+|+|.-|.+.++.|. .|+ +|+++ |..+... .+.+.|+... . .+.. +++|+||.. +|++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~----~V~~~-D~~~~~~-~~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~ 67 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFG----GVDIF-DDKFTES-HKDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPS 67 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCC----eEEEE-cCCCCcc-chhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCC
Confidence 68999999999999999999 999 99999 8653322 1233466553 2 2223 468988876 3544
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.4 Score=43.04 Aligned_cols=69 Identities=10% Similarity=0.006 Sum_probs=46.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ecCc--hhh-----hccCCEEEEeeCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSDN--NAV-----VEYSDVVVFSVKP 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~~~--~~~-----~~~aDivil~v~~ 81 (272)
...+-|+|.|.+|..+++.|.+.|+ ++.+. +.+. .+...+.|..+ ..|+ .+. +++|+.|++++++
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~----~vvVI-d~d~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~d 312 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQ----AVTVI-VPLG--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDN 312 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCC----CEEEE-ECch--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCC
Confidence 3468999999999999999999988 88888 6653 23333334322 2221 222 4589999988876
Q ss_pred ccHH
Q 024121 82 QVVK 85 (272)
Q Consensus 82 ~~~~ 85 (272)
+...
T Consensus 313 D~~N 316 (393)
T PRK10537 313 DADN 316 (393)
T ss_pred hHHH
Confidence 6533
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.068 Score=47.62 Aligned_cols=63 Identities=17% Similarity=0.307 Sum_probs=42.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCcee-ecC---chhhhccCCEEEE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKV-LSD---NNAVVEYSDVVVF 77 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~-~~~---~~~~~~~aDivil 77 (272)
+++|||||.|..|..|+....+.|+ +|.++ +.++.. ...+...-+.. ..| ..+.++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~----~v~~~-d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGY----KVIVL-DPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC----EEEEE-eCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 4689999999999999999999999 99999 876543 22222211111 122 2345667887643
|
|
| >COG1832 Predicted CoA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.37 Score=36.07 Aligned_cols=97 Identities=19% Similarity=0.256 Sum_probs=72.2
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
.++|+++|+ .+-+.-.++.|.++|| +|+=. |....- +.+ +|-.+..+..|+-..-|+|-+-.+++.+.
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~GY----~ViPV-NP~~~~-~ei--LG~k~y~sL~dIpe~IDiVdvFR~~e~~~ 87 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQKGY----RVIPV-NPKLAG-EEI--LGEKVYPSLADIPEPIDIVDVFRRSEAAP 87 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHCCC----EEEee-Ccccch-HHh--cCchhhhcHHhCCCCCcEEEEecChhhhH
Confidence 478999999 6788889999999999 98877 653221 111 57777888888888999999999999999
Q ss_pred HHHHHhchhcCCCCEEEEEcCCCCHHHHHHHh
Q 024121 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~ 117 (272)
++.++.... +.-++...-|+..+...+.+
T Consensus 88 ~i~~eal~~---~~kv~W~QlGi~n~ea~~~~ 116 (140)
T COG1832 88 EVAREALEK---GAKVVWLQLGIRNEEAAEKA 116 (140)
T ss_pred HHHHHHHhh---CCCeEEEecCcCCHHHHHHH
Confidence 999876542 24455566677655544433
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.28 Score=42.50 Aligned_cols=84 Identities=15% Similarity=0.134 Sum_probs=51.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~ 84 (272)
..+++-|.|+ |-+|.++++.|.+.|+ +|++. .|+.++.++..+. ..+......+.++.+. .+.+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~----~Vil~-~R~~~~~~~~~~~-------l~~~~~~~~v~~~~~Dl~d~~sv 80 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA----EVILP-VRNRAKGEAAVAA-------IRTAVPDAKLSLRALDLSSLASV 80 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHHhCCCCceEEEEecCCCHHHH
Confidence 3456666665 8999999999999999 99999 9998776654330 1111112344455443 3345
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
+.+++++.....+=.++|+.
T Consensus 81 ~~~~~~~~~~~~~iD~li~n 100 (313)
T PRK05854 81 AALGEQLRAEGRPIHLLINN 100 (313)
T ss_pred HHHHHHHHHhCCCccEEEEC
Confidence 66666654433333456654
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.32 Score=40.74 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=35.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
+.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|+.++.+++.+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~l~~ 47 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA----RVAVL-DKSAAGLQELEA 47 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHh
Confidence 4567777776 8899999999999999 99999 999877766543
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.3 Score=40.44 Aligned_cols=41 Identities=12% Similarity=0.224 Sum_probs=34.2
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 10 ~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
.+++-|.| .|.+|.++++.|.+.|+ +|.+. +|++++.+.+.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~----~v~~~-~r~~~~~~~~~ 43 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR----DLALC-ARRTDRLEELK 43 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHH
Confidence 35677886 59999999999999998 99999 99987766554
|
|
| >COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.29 Score=42.32 Aligned_cols=43 Identities=7% Similarity=0.175 Sum_probs=33.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC--CCCCCcEEEEeC-CCHHHHHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSG--VLPPDRICTAVH-SNLKRRDAFES 56 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g--~~~~~~V~v~~~-r~~~~~~~l~~ 56 (272)
+.||+|=|.|+||...++.+.+.+ . +|...++ .+++....|.+
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~di----eVVaInd~t~~~~~A~Llk 46 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDGDI----EVVAINDLTDPDYLAHLLK 46 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCCCe----EEEEEecCCCHHHHHHHHh
Confidence 368999999999999999999876 4 7776645 45666555554
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.15 Score=43.75 Aligned_cols=74 Identities=11% Similarity=0.178 Sum_probs=52.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHh----CCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAK----SGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~----~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~ 81 (272)
....+++.|||- ...|.+++.-|.+ .+. .|+++ ..+. .+..+.+++||+||.++..
T Consensus 156 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~a----tVt~~-hs~t--------------~~l~~~~~~ADIvI~Avg~ 216 (295)
T PRK14174 156 ETKGKHCVVVGRSNIVGKPMANLMLQKLKESNC----TVTIC-HSAT--------------KDIPSYTRQADILIAAIGK 216 (295)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHhccccCCC----EEEEE-eCCc--------------hhHHHHHHhCCEEEEecCc
Confidence 445688999987 5679999988876 465 88887 5443 2346678999999999943
Q ss_pred ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
..+ +. ...+++|.++|++
T Consensus 217 ~~l---i~--~~~vk~GavVIDV 234 (295)
T PRK14174 217 ARF---IT--ADMVKPGAVVIDV 234 (295)
T ss_pred cCc---cC--HHHcCCCCEEEEe
Confidence 322 21 1235799999987
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.19 Score=41.86 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=52.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. + .+ ...++.++.. .++.+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-l------~~--~~~~~~~~~~D~~~~~~~ 73 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA----QVAIA-ARHLDALEKLADE-I------GT--SGGKVVPVCCDVSQHQQV 73 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHH-H------Hh--cCCeEEEEEccCCCHHHH
Confidence 4567878876 8999999999999999 99999 9998776655431 0 00 0122322222 23456
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
.++++++...+.+=..+|++.
T Consensus 74 ~~~~~~~~~~~g~id~lv~~a 94 (253)
T PRK05867 74 TSMLDQVTAELGGIDIAVCNA 94 (253)
T ss_pred HHHHHHHHHHhCCCCEEEECC
Confidence 666666554443334666653
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.03 Score=50.21 Aligned_cols=40 Identities=10% Similarity=0.255 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH
Q 024121 6 IPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR 50 (272)
Q Consensus 6 ~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~ 50 (272)
.+.+.++|.|+|. |.+|+.+++.|++.|+ +|++. .|++.+
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~----~V~~l-~R~~~~ 96 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRGY----NVVAV-AREKSG 96 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-Eechhh
Confidence 3455689999976 9999999999999999 99999 888754
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.28 Score=41.09 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=34.3
Q ss_pred CCCeEEEEcc-c-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024121 9 ESFILGFIGA-G-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (272)
Q Consensus 9 ~~~~IgiIG~-G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l 54 (272)
+.+++-|.|. | -+|.++++.|.+.|+ +|.+. +|++++.+..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~----~V~~~-~~~~~~~~~~ 58 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA----RVVIS-DIHERRLGET 58 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHH
Confidence 4578889996 6 599999999999999 89999 8988766544
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.48 Score=43.00 Aligned_cols=113 Identities=11% Similarity=0.039 Sum_probs=66.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEE--------EeC---CCHHHHHHHHH---------------c-Cc
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICT--------AVH---SNLKRRDAFES---------------I-GV 59 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v--------~~~---r~~~~~~~l~~---------------~-g~ 59 (272)
..+.+||+|-|.|++|+..|+.|.+.|. +|.. | + .+.++++.+.+ . +.
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~Ga----kvVavSD~~G~i~-d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga 299 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGA----KVVTISGPDGYIY-DPDGISGEKIDYMLELRASGNDIVAPYAEKFPGS 299 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEcCCceEE-CCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCC
Confidence 3466899999999999999999999998 7776 7 7 55555322221 1 32
Q ss_pred eeecCchhhh-ccCCEEEEeeCcccH-HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccC
Q 024121 60 KVLSDNNAVV-EYSDVVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPN 128 (272)
Q Consensus 60 ~~~~~~~~~~-~~aDivil~v~~~~~-~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~ 128 (272)
+.. +..+++ .+|||.+-|--...+ .+..+.|.. ..-++|+--.++.....-.+.+. .+-+-+.|.
T Consensus 300 ~~i-~~~~~~~~~cDVliPcAl~n~I~~~na~~l~~--~~ak~V~EgAN~p~t~eA~~iL~-~rGI~~vPD 366 (445)
T PRK14030 300 TFF-AGKKPWEQKVDIALPCATQNELNGEDADKLIK--NGVLCVAEVSNMGCTAEAIDKFI-AAKQLFAPG 366 (445)
T ss_pred EEc-CCccceeccccEEeeccccccCCHHHHHHHHH--cCCeEEEeCCCCCCCHHHHHHHH-HCCCEEeCc
Confidence 322 233333 379999988654443 334444432 13457777666643333334443 123334454
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.11 Score=45.21 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=55.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~ 83 (272)
.+++-+.|.|-.|..+|.++...|. +|.|+ ..+|-++-+..=.|.++. ..++++..+|++|.|+-..+
T Consensus 209 GK~vVV~GYG~vGrG~A~~~rg~GA----~ViVt-EvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnkd 276 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLRGMGA----RVIVT-EVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNKD 276 (420)
T ss_pred CceEEEecccccchHHHHHhhcCCC----eEEEE-ecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCcC
Confidence 4678888999999999999999998 99999 888865544444788885 46788999999999995544
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.28 Score=40.79 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=36.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
..++|-|.|. |-+|.++++.|.+.|+ +|++. .|++++.+.+.
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G~----~Vi~~-~r~~~~~~~~~ 50 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAGA----KVVLA-SRRVERLKELR 50 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHH
Confidence 4578889876 9999999999999999 99999 99988776554
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.24 Score=43.34 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=54.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---ccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~ 83 (272)
+..++|-|.|. |-+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+ ...++.++.+. +++
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~----~Vvl~-~R~~~~l~~~~~~-------l~~--~g~~~~~v~~Dv~d~~~ 71 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGA----KVVLL-ARGEEGLEALAAE-------IRA--AGGEALAVVADVADAEA 71 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHH--cCCcEEEEEecCCCHHH
Confidence 45567888876 9999999999999999 99999 9998776654321 000 12344444432 345
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
++.+++++...+.+=.++|+..
T Consensus 72 v~~~~~~~~~~~g~iD~lInnA 93 (334)
T PRK07109 72 VQAAADRAEEELGPIDTWVNNA 93 (334)
T ss_pred HHHHHHHHHHHCCCCCEEEECC
Confidence 6666666654444445677654
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.14 Score=47.03 Aligned_cols=69 Identities=16% Similarity=0.059 Sum_probs=47.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH----HHHHHHHcCceee-cCchhhhccCCEEEEee--Cc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK----RRDAFESIGVKVL-SDNNAVVEYSDVVVFSV--KP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~----~~~~l~~~g~~~~-~~~~~~~~~aDivil~v--~~ 81 (272)
+.+||+|+|+|.=|.+.++.|.+.|. +|+++ |.++. ...++.+.+..+. ....+.+.++|+||..- |+
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~g~----~v~~~-d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~ 81 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAHLP----AQALT-LFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISP 81 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHcCC----EEEEE-cCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCC
Confidence 45789999999999999999999999 99999 85321 1223444222222 22345567899998874 54
Q ss_pred c
Q 024121 82 Q 82 (272)
Q Consensus 82 ~ 82 (272)
+
T Consensus 82 ~ 82 (468)
T PRK04690 82 Y 82 (468)
T ss_pred C
Confidence 4
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.049 Score=49.06 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=30.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
.+|.|||.|.+|.+.|..|.+.|+ +|.++ +|+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~----~V~vl-e~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY----QVTVF-DRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----eEEEE-eCCC
Confidence 589999999999999999999998 99999 8864
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.27 Score=40.75 Aligned_cols=44 Identities=16% Similarity=0.131 Sum_probs=36.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
+...++|-|.|. |.+|..+++.|++.|+ +|.+. +|++++.+.+.
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~----~Vi~~-~r~~~~~~~~~ 53 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA----TVILL-GRTEEKLEAVY 53 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC----cEEEE-eCCHHHHHHHH
Confidence 445677888855 9999999999999999 99999 99987765543
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.14 Score=46.60 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=46.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHH--HHHHHHHcCceeecC--chhhhccCCEEEEee
Q 024121 10 SFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLK--RRDAFESIGVKVLSD--NNAVVEYSDVVVFSV 79 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~--~~~~l~~~g~~~~~~--~~~~~~~aDivil~v 79 (272)
.++|.|||.|..|.+-++.|++. |+ +|+++ |..+. ..+++.+ |+.+... ..+.+.++|+|+.+-
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~----~v~~~-D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~Sp 76 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQL----TVKVI-DTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNP 76 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCC----eEEEE-eCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECC
Confidence 36899999999999999999987 56 89999 86542 2234543 7765321 334467899888874
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.3 Score=40.97 Aligned_cols=114 Identities=12% Similarity=0.077 Sum_probs=64.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCC----------CHHHHHHH---HH-c------------Cc
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHS----------NLKRRDAF---ES-I------------GV 59 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r----------~~~~~~~l---~~-~------------g~ 59 (272)
..+.+||.|.|.|++|+..++.|.+.|. +|+ +. |. +.+.+..+ .+ . +.
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~Ga----kvvaVs-D~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a 109 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGA----KVVTLS-DSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTA 109 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEE-CCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCC
Confidence 4456899999999999999999999998 766 44 41 22222221 11 1 23
Q ss_pred eeecCchhhh-ccCCEEEEeeCcccH-HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCc
Q 024121 60 KVLSDNNAVV-EYSDVVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNT 129 (272)
Q Consensus 60 ~~~~~~~~~~-~~aDivil~v~~~~~-~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~ 129 (272)
+.. ++++++ .+|||++-|--...+ .+..+.|.. ..-++|+...++-....-.+.+.. +-+.+.|..
T Consensus 110 ~~~-~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~t~~a~~~L~~-rGI~vvPD~ 177 (254)
T cd05313 110 KYF-EGKKPWEVPCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPCTAEAIEVFRQ-AGVLFAPGK 177 (254)
T ss_pred EEe-CCcchhcCCCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCCCHHHHHHHHH-CCcEEECch
Confidence 332 334443 489999998544443 334444431 134577766554333333344431 334444543
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.4 Score=39.55 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=35.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
+.+++-|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+++.
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~----~v~~~-~r~~~~~~~~~ 47 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA----RVAIT-GRDPASLEAAR 47 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC----EEEEe-cCCHHHHHHHH
Confidence 3467888876 9999999999999999 99999 99877665543
|
|
| >COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.76 Score=41.70 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=46.8
Q ss_pred CeEEEEcccHHH-HHHHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceeecCchhh-hccCCEEEEee
Q 024121 11 FILGFIGAGKMA-ESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLSDNNAV-VEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~G~mG-~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~~~~~~~-~~~aDivil~v 79 (272)
.+|-|||-|-.| +++|.-|++.|| +|... |-... ..++|.+.|+.+.....+. +.+.|+|+...
T Consensus 8 ~~iHfIGIgG~GMsglA~iL~~~G~----~VsGS-D~~~~~~t~~L~~~G~~i~~gh~~~ni~~~~~VV~s~ 74 (459)
T COG0773 8 PKIHFIGIGGIGMSGLAEILLNLGY----KVSGS-DLAESPMTQRLEALGIEIFIGHDAENILDADVVVVSN 74 (459)
T ss_pred ceEEEEeeccccHHHHHHHHHhCCC----ceECc-cccccHHHHHHHHCCCeEeCCCCHHHcCCCceEEEec
Confidence 479999987777 568999999999 99998 76543 4567777898876443332 66777776664
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.16 Score=44.39 Aligned_cols=136 Identities=12% Similarity=0.053 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH----HHHH-------c----Cc---------eeecCchhhhccCCEEE
Q 024121 21 MAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES-------I----GV---------KVLSDNNAVVEYSDVVV 76 (272)
Q Consensus 21 mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~-------~----g~---------~~~~~~~~~~~~aDivi 76 (272)
||+.||..+..+|+ +++.. +.|..-++ .+.. . +. ....|.. -+.++|+++
T Consensus 1 MG~gia~~~~~~~i----~~vl~-~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~-~~~~~dmvi 74 (380)
T KOG1683|consen 1 MGAGIAIVFILAGI----RTVLV-DANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYT-GFANADMVI 74 (380)
T ss_pred CcchHHHHHHHcCC----cEEEE-eccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccc-cccccceec
Confidence 78999999999999 88888 77754322 1111 0 11 1122322 367899996
Q ss_pred EeeCc--ccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHH
Q 024121 77 FSVKP--QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGEL 153 (272)
Q Consensus 77 l~v~~--~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 153 (272)
-+|-- +-..+++.+|....++..++-+.++++++..+...+. ...+++.|-..|...-+-..++. ....+......
T Consensus 75 eav~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~-~~~tS~~~iA~ 153 (380)
T KOG1683|consen 75 EAVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIIL-ALYTSKLTIAT 153 (380)
T ss_pred cchhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHH-hcCCCchHHHH
Confidence 66632 2345777777776666666667778888888776554 24566666555543322111111 12234444555
Q ss_pred HHHHhhhcCC
Q 024121 154 IGKLFGSVGK 163 (272)
Q Consensus 154 v~~ll~~~G~ 163 (272)
+-+.-...|+
T Consensus 154 Ain~~~~~gk 163 (380)
T KOG1683|consen 154 AINGGSPAGK 163 (380)
T ss_pred HHhcccccCC
Confidence 5555555555
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.33 Score=40.52 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=22.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSG 33 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g 33 (272)
...||.|||+|.+|+.++.+|.+.|
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLH 34 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHcc
Confidence 3568999999999999999999875
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.41 Score=40.14 Aligned_cols=80 Identities=11% Similarity=0.186 Sum_probs=51.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+++.+.- ...+.++.+ ..+.+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~~------------~~~~~~~~~Dl~~~~~~ 67 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA----RVAIV-DIDADNGAAVAASL------------GERARFIATDITDDAAI 67 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHh------------CCeeEEEEecCCCHHHH
Confidence 4567878876 9999999999999999 99999 99987766554310 112323332 23345
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
.++++++...+.+=..+|+..
T Consensus 68 ~~~~~~~~~~~g~id~lv~~a 88 (261)
T PRK08265 68 ERAVATVVARFGRVDILVNLA 88 (261)
T ss_pred HHHHHHHHHHhCCCCEEEECC
Confidence 666666544433334666653
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.35 Score=41.61 Aligned_cols=84 Identities=23% Similarity=0.231 Sum_probs=50.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~~ 85 (272)
.++|-|.|. |-+|.++++.|.+.|+ +|.+. .|+.++.+...+. ..+.....++.++.+. .+.++
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~----~vi~~-~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dl~d~~~v~ 83 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGA----HVVLA-VRNLDKGKAAAAR-------ITAATPGADVTLQELDLTSLASVR 83 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHHhCCCCceEEEECCCCCHHHHH
Confidence 356777765 9999999999999999 99998 8988765543220 0000112234343332 23455
Q ss_pred HHHHHhchhcCCCCEEEEEc
Q 024121 86 DVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~ 105 (272)
.+++++.....+=..+|++.
T Consensus 84 ~~~~~~~~~~~~iD~li~nA 103 (306)
T PRK06197 84 AAADALRAAYPRIDLLINNA 103 (306)
T ss_pred HHHHHHHhhCCCCCEEEECC
Confidence 66666544333334666653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 272 | ||||
| 2izz_A | 322 | Crystal Structure Of Human Pyrroline-5-Carboxylate | 7e-49 | ||
| 2gr9_A | 277 | Crystal Structure Of P5cr Complexed With Nadh Lengt | 2e-48 | ||
| 2ger_A | 321 | Crystal Structure And Oxidative Mechanism Of Human | 2e-48 | ||
| 2rcy_A | 262 | Crystal Structure Of Plasmodium Falciparum Pyrrolin | 1e-32 | ||
| 3tri_A | 280 | Structure Of A Pyrroline-5-Carboxylate Reductase (P | 5e-31 | ||
| 3gt0_A | 247 | Crystal Structure Of Pyrroline 5-Carboxylate Reduct | 5e-27 | ||
| 2amf_A | 259 | Crystal Structure Of 1-Pyrroline-5-Carboxylate Redu | 1e-26 | ||
| 2ahr_A | 259 | Crystal Structures Of 1-Pyrroline-5-Carboxylate Red | 4e-25 | ||
| 1yqg_A | 263 | Crystal Structure Of A Pyrroline-5-Carboxylate Redu | 8e-17 |
| >pdb|2IZZ|A Chain A, Crystal Structure Of Human Pyrroline-5-Carboxylate Reductase Length = 322 | Back alignment and structure |
|
| >pdb|2GR9|A Chain A, Crystal Structure Of P5cr Complexed With Nadh Length = 277 | Back alignment and structure |
|
| >pdb|2GER|A Chain A, Crystal Structure And Oxidative Mechanism Of Human Pyrroline-5- Carboxylate Reductase Length = 321 | Back alignment and structure |
|
| >pdb|2RCY|A Chain A, Crystal Structure Of Plasmodium Falciparum Pyrroline Carboxylate Reductase (Mal13p1.284) With Nadp Bound Length = 262 | Back alignment and structure |
|
| >pdb|3TRI|A Chain A, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc) From Coxiella Burnetii Length = 280 | Back alignment and structure |
|
| >pdb|3GT0|A Chain A, Crystal Structure Of Pyrroline 5-Carboxylate Reductase From Bacillus Cereus. Northeast Structural Genomics Consortium Target Bcr38b Length = 247 | Back alignment and structure |
|
| >pdb|2AMF|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase From Human Pathogen Streptococcus Pyogenes Length = 259 | Back alignment and structure |
|
| >pdb|2AHR|A Chain A, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase From Human Pathogen Streptococcus Pyogenes Length = 259 | Back alignment and structure |
|
| >pdb|1YQG|A Chain A, Crystal Structure Of A Pyrroline-5-Carboxylate Reductase From Neisseria Meningitides Mc58 Length = 263 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* Length = 322 | Back alignment and structure |
|---|
Score = 358 bits (921), Expect = e-125
Identities = 121/279 (43%), Positives = 171/279 (61%), Gaps = 7/279 (2%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFESIGV 59
+ + +S +GFIGAG++A ++AKG +GVL +I ++ +L A +GV
Sbjct: 13 LGTENLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGV 72
Query: 60 KVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGH 119
K+ N V++SDV+ +VKP ++ + +I + + ++VS AAGV + +++
Sbjct: 73 KLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSA 132
Query: 120 ----SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAI 175
R IR M NTP V E ATV + G A EDG L+ +L SVG +E L DA+
Sbjct: 133 FRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAV 192
Query: 176 TGLSG--PAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDD 233
TGLSG PAY F A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+
Sbjct: 193 TGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDN 252
Query: 234 VASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 272
V+SPGG TI +H LE GFR +L+NAV A+ R+REL
Sbjct: 253 VSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQ 291
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} Length = 262 | Back alignment and structure |
|---|
Score = 348 bits (896), Expect = e-122
Identities = 94/263 (35%), Positives = 147/263 (55%), Gaps = 11/263 (4%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
LGF+G G+M ++A G+A + ++ + + S ++ + +S N + +
Sbjct: 7 LGFMGLGQMGSALAHGIANANIIKKENLFYYGPSK-------KNTTLNYMSSNEELARHC 59
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPS 131
D++V +VKP + V I+P LS KLL+S+ G+ + L+E G ++ + VMPNTP
Sbjct: 60 DIIVCAVKPDIAGSVLNNIKPYLS-SKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPC 118
Query: 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIFLAIE 189
VGE + + D + + +F S G I EK D T +SG PAY++L IE
Sbjct: 119 LVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDMDIATAISGCGPAYVYLFIE 178
Query: 190 ALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELE 249
+L D GV GL REL+ L QT+ G+ MV KS + QLKD++ SPGG T G++ LE
Sbjct: 179 SLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLKDNIVSPGGITAVGLYSLE 238
Query: 250 KSGFRGILMNAVVAAAKRSRELS 272
K+ F+ +MNAV AA ++S+ +
Sbjct: 239 KNSFKYTVMNAVEAACEKSKAMG 261
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} Length = 280 | Back alignment and structure |
|---|
Score = 344 bits (884), Expect = e-120
Identities = 104/265 (39%), Positives = 143/265 (53%), Gaps = 6/265 (2%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+ FIG G MA +I G+ +G P+RIC S K E GV DN +
Sbjct: 6 ITFIGGGNMARNIVVGLIANGY-DPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNA 64
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLS-RKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTP 130
DVVV +VKP +K V +++ +LS K L++S+A GV +++W G SR +R MPNTP
Sbjct: 65 DVVVLAVKPHQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTP 124
Query: 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLSG--PAYIFLA 187
S+V AT + T ++ L + +VG IW + E + I LSG PAYIFL
Sbjct: 125 SSVRAGATGLFANETVDKDQKNLAESIMRAVGLVIWVSSEDQIEKIAALSGSGPAYIFLI 184
Query: 188 IEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHE 247
+EAL + GL +E A L QTVLGAA M ++ + QL+ V SPGGTT I
Sbjct: 185 MEALQEAAEQLGLTKETAELLTEQTVLGAARMALETEQSVVQLRQFVTSPGGTTEQAIKV 244
Query: 248 LEKSGFRGILMNAVVAAAKRSRELS 272
LE R + + A+ AA R++ELS
Sbjct: 245 LESGNLRELFIKALTAAVNRAKELS 269
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Length = 259 | Back alignment and structure |
|---|
Score = 341 bits (877), Expect = e-119
Identities = 83/262 (31%), Positives = 143/262 (54%), Gaps = 11/262 (4%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+G IG GKMA +I KG+ ++ P + + S + ++ E + + + +++
Sbjct: 6 IGIIGVGKMASAIIKGLKQT----PHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQV 61
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS-RFIRVMPNTPS 131
D+V+ +KPQ+ + V + K+ ++S+AAG+ L+ L + G +R+MPN +
Sbjct: 62 DLVILGIKPQLFETVLKPLHF----KQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNA 117
Query: 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIFLAIE 189
+ +++T ++ ++E + L S G + EK FD T L+G PAYI+L IE
Sbjct: 118 QILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISEKDFDTFTALAGSSPAYIYLFIE 177
Query: 190 ALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELE 249
ALA GV G+P+ AL + +QTVL +AS + S + P D + SPGGTTIAG+ ELE
Sbjct: 178 ALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLMELE 237
Query: 250 KSGFRGILMNAVVAAAKRSREL 271
+ G + +A+ +++ L
Sbjct: 238 RLGLTATVSSAIDKTIDKAKSL 259
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} Length = 247 | Back alignment and structure |
|---|
Score = 331 bits (851), Expect = e-115
Identities = 87/243 (35%), Positives = 143/243 (58%), Gaps = 3/243 (1%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+GFIG G M ++ G+ ++ ++I + + ++A E G+ +DNN V + +
Sbjct: 5 IGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNA 64
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS-RFIRVMPNTPS 131
D+++ S+KP + + +I+ ++ ++V++AAG ++ + + +RVMPNTP+
Sbjct: 65 DILILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPA 124
Query: 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIFLAIE 189
VGE + + TE+D E + +F S G+ EKL D +T +SG PAY+++ IE
Sbjct: 125 LVGEGMSALCPNEMVTEKDLEDVLNIFNSFGQTEIVSEKLMDVVTSVSGSSPAYVYMIIE 184
Query: 190 ALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELE 249
A+AD V G+PR A A+Q VLG+A MV ++G HPG+LKD V SPGGTTI + LE
Sbjct: 185 AMADAAVLDGMPRNQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGTTIEAVATLE 244
Query: 250 KSG 252
+ G
Sbjct: 245 EKG 247
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* Length = 263 | Back alignment and structure |
|---|
Score = 319 bits (820), Expect = e-110
Identities = 81/264 (30%), Positives = 130/264 (49%), Gaps = 11/264 (4%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+ F+G G MA ++A G+ K G RI A KR + +GV+ S +
Sbjct: 3 VYFLGGGNMAAAVAGGLVKQG---GYRIYIANRGAEKRERLEKELGVET-SATLPELHSD 58
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPS 131
DV++ +VKPQ ++ IR L++SVAAG+ + L + G R +RVMPNTP
Sbjct: 59 DVLILAVKPQDMEAACKNIRT---NGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPG 115
Query: 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLSG--PAYIFLAI 188
+G + M +E D + ++ SVG +W DE+ ITG+SG PAY+F +
Sbjct: 116 KIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWLDDEEKMHGITGISGSGPAYVFYLL 175
Query: 189 EALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL 248
+AL + + G A L+ T GA ++ ++G+ +L+ +V S GGTT +
Sbjct: 176 DALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSKGGTTHEAVEAF 235
Query: 249 EKSGFRGILMNAVVAAAKRSRELS 272
+ + V A +RS+E+
Sbjct: 236 RRHRVAEAISEGVCACVRRSQEME 259
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 2e-16
Identities = 34/239 (14%), Positives = 81/239 (33%), Gaps = 30/239 (12%)
Query: 13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY 71
+ +GA GKM I + + S A+ + RD + +G+ + +D + ++
Sbjct: 14 VAILGAGGKMGARITRKIHDSAH-----HLAAIEIAPEGRDRLQGMGIPL-TDGDGWIDE 67
Query: 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPS 131
+DVVV ++ +++ VA I P + +++ + A + + P P
Sbjct: 68 ADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMPERADITYFIGHPCHPP 127
Query: 132 AVGE---------------AATVMSLGGTATEEDGELIGKL----FGSVGKIWRADEK-- 170
+ ++ EE + + + V + R +
Sbjct: 128 LFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQL 187
Query: 171 --LFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHP 227
L ++ + ++ + A+ + G+ R+ AL + +M
Sbjct: 188 AILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHLNVEIAMWFGYSPKV 246
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266 | Back alignment and structure |
|---|
Score = 64.4 bits (156), Expect = 3e-12
Identities = 28/212 (13%), Positives = 73/212 (34%), Gaps = 11/212 (5%)
Query: 14 GFIGAGKMAESIAKGVAKSGVLPPDRICTAVH--SNLKRRDAFESIGVKVLSDNNAVVEY 71
IGAG +A ++AK + + G V+ + R+ + + + +D V Y
Sbjct: 14 VLIGAGNLATNLAKALYRKGF-----RIVQVYSRTEESARELAQKVEAEYTTDLAEVNPY 68
Query: 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIR-VMPNTP 130
+ + + S+K ++ I + L+V A + + + H + +
Sbjct: 69 AKLYIVSLKDSAFAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPHYGVFYPMQTFSK 128
Query: 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR---ADEKLFDAITGLSGPAYIFLA 187
+ + ++ ED + + ++ ++++ + + +
Sbjct: 129 QREVDFKEIPFFIEASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHM 188
Query: 188 IEALADGGVAAGLPRELALGLASQTVLGAASM 219
A+ LP ++ L L +T +
Sbjct: 189 YALAAELLKKYNLPFDVMLPLIDETARKVHEL 220
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 Length = 276 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 6e-05
Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 8/153 (5%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
L F+G G + + + + S + R+ E G K + E +
Sbjct: 5 LNFVGTGTLTRFFLECLKDRYEI----GYILSRSIDRARNLAEVYGGKAATLEKH-PELN 59
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSA 132
VV V + +K VA + +LV + + + ++ S ++
Sbjct: 60 GVVFVIVPDRYIKTVANHLNL---GDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSLEK 116
Query: 133 VGEAATVMSLGGTATEEDGELIGKLFGSVGKIW 165
E + G E ++ K+ + +
Sbjct: 117 ALEMKDQIVFGLEGDERGLPIVKKIAEEISGKY 149
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 9e-05
Identities = 27/180 (15%), Positives = 53/180 (29%), Gaps = 38/180 (21%)
Query: 51 RDAF-ESIGVKVLSDNNAVV----EYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVA 105
DAF ++ K + D + E +++ V LLS+++ +V
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIM---SKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 106 AGVKLKDLQEWTGHSRFIRVMPNTPSAVGEA--ATVMSLGGTATEEDGELIGKLFGSVGK 163
L+ ++ I+ PS + L D ++ K
Sbjct: 83 VEEVLRINYKFLMSP--IKTEQRQPSMMTRMYIEQRDRLYN-----DNQVFAKYN----- 130
Query: 164 IWRADE--KLFDAITGLSGPAYIF-----------LAIEALADGGVAAGLPRE---LALG 207
+ R KL A+ L + +A++ V + + L L
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 2e-04
Identities = 38/229 (16%), Positives = 76/229 (33%), Gaps = 74/229 (32%)
Query: 7 PAESFIL-GFIGAGKMAESIAKGVAKSGVL---PPDRI-------CTAVHSNLKRRDAFE 55
PA++ ++ G +G+GK +A V S + +I C + + L+ +
Sbjct: 149 PAKNVLIDGVLGSGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM---LQ 203
Query: 56 SIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKK----LLVSVAAGVKLK 111
+ ++ + + ++S + + + ++R LL K LLV L
Sbjct: 204 KLLYQIDPNWTSRSDHSSNI-----KLRIHSIQAELRRLLKSKPYENCLLV-------LL 251
Query: 112 DLQEW--------------TGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKL 157
++Q T +RF +V +A ++ T T ++ + L
Sbjct: 252 NVQNAKAWNAFNLSCKILLT--TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK---SL 306
Query: 158 FGSVGKIWRADEKLFDAITGLSGPAYIFLAIEALADGGVAAGLPRELAL 206
D + D L E L PR L++
Sbjct: 307 LLKY-----LDCRPQD------------LPREVL------TTNPRRLSI 332
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 272 | |||
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 100.0 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 100.0 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 100.0 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 100.0 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 100.0 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 100.0 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 100.0 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.97 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.97 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.97 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.96 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.96 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.96 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.96 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.95 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.95 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.94 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.94 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.94 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.94 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.94 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.93 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.93 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.93 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.93 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.93 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.93 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.93 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.93 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.92 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.92 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.92 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.91 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.91 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.91 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.9 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.9 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.9 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.9 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.89 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.88 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.88 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.88 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.87 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.87 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.87 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.86 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.86 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.86 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.86 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.85 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.85 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.84 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.84 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.83 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.83 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.83 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.81 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.81 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.81 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.81 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.81 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.69 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.8 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.78 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.78 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.78 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.77 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.76 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.76 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.75 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.75 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.73 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.73 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.72 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.72 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.71 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.69 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.68 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.68 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.67 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.66 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.65 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.63 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.59 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.53 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.49 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.47 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 99.41 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.4 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.37 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.34 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.34 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.33 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.28 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 99.28 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.27 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.24 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.23 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.23 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.23 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.22 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.22 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.21 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.2 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.19 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.19 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 99.16 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.16 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.16 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.16 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.15 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 99.15 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 99.11 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.11 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 99.1 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.1 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 99.09 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.08 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.07 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.06 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 99.04 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 99.04 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 99.04 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 99.04 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.03 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.02 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 99.02 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.01 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 99.01 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 99.01 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.01 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 99.0 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 99.0 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.99 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.97 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.96 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.96 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.96 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.94 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.94 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.94 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.93 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.92 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.91 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.91 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.91 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.9 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.89 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.88 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.88 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.87 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.86 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.86 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.86 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.84 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.83 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.83 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.82 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.81 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.8 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.8 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.78 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.77 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.75 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.75 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.73 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.73 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.72 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.72 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.72 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.71 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.71 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.71 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.7 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.7 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.69 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.69 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.67 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 98.65 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.65 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.64 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.64 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.63 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.62 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.62 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.61 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.61 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 98.6 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 98.6 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.59 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.58 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.57 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.56 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.56 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 98.55 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 98.53 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 98.53 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.52 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.52 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.52 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.52 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.51 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.51 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 98.5 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.5 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 98.49 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.49 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.48 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 98.48 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.48 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.47 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.46 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.46 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 98.45 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.44 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.43 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.43 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.43 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.43 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 98.43 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.41 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.41 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 98.41 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.4 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.38 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.38 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 98.37 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 98.36 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.36 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.35 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 98.34 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.33 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 98.33 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 98.32 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 98.31 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 98.3 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 98.3 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 98.29 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 98.28 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 98.28 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 98.28 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.26 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 98.26 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 98.25 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 98.25 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.23 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 98.23 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.23 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.22 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 98.2 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.2 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.2 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 98.19 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 98.19 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 98.19 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.19 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 98.19 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 98.16 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 98.13 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 98.11 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 98.1 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 98.07 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 98.06 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 98.05 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.04 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 98.04 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 98.04 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 98.04 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 98.04 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 98.04 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 98.03 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.0 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.98 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.97 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.96 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.94 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.94 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.93 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.92 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 97.89 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 97.88 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.88 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.88 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.87 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.86 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.86 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.85 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 97.83 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 97.83 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.81 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.8 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.79 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.78 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 97.75 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.74 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.74 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.74 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.73 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 97.73 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.73 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 97.73 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.72 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.71 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 97.7 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.67 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 97.63 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 97.63 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 97.63 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.61 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.6 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.59 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 97.58 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.57 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.55 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 97.55 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.54 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 97.54 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 97.53 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.52 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.52 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.5 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.5 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 97.49 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 97.48 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.42 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.41 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 97.41 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.38 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.37 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 97.36 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 97.32 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.32 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.31 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.3 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 97.28 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 97.28 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.28 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 97.26 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.25 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.22 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 97.21 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 97.2 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 97.19 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 97.19 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.17 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 97.13 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 97.12 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 97.12 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 97.11 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 97.11 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 97.1 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 97.1 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 97.09 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 97.08 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 97.03 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 97.03 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 97.01 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 96.99 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.93 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 96.92 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 96.91 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 96.91 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 96.9 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 96.9 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 96.88 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.84 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 96.83 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.83 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 96.83 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 96.82 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 96.8 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.8 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 96.74 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.74 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 96.74 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.69 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 96.67 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 96.66 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.63 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 96.6 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 96.58 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 96.56 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 96.55 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 96.52 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 96.49 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 96.48 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.45 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 96.45 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 96.45 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 96.42 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 96.38 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 96.37 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 96.36 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.34 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 96.33 | |
| 3h2z_A | 382 | Mannitol-1-phosphate 5-dehydrogenase; PSI- protein | 96.25 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 96.23 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.22 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 96.2 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.16 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 96.14 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 96.13 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 96.13 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 96.1 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 96.09 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 96.07 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.02 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 95.99 | |
| 3a06_A | 376 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M | 95.99 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 95.98 | |
| 2g82_O | 331 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G | 95.98 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.97 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 95.95 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 95.95 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 95.92 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 95.92 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.88 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.87 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 95.84 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 95.84 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 95.8 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 95.8 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 95.77 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 95.76 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 95.72 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 95.72 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 95.71 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 95.7 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 95.7 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 95.69 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 95.69 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 95.65 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 95.61 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 95.6 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 95.59 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.58 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 95.57 | |
| 1r0k_A | 388 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 95.57 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.56 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 95.56 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 95.56 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 95.56 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 95.56 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 95.55 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 95.54 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 95.51 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 95.51 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 95.51 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 95.51 | |
| 1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 95.5 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 95.5 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 95.49 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 95.49 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 95.49 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 95.48 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 95.48 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 95.47 | |
| 3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 95.46 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 95.46 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 95.46 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.45 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 95.45 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 95.45 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 95.43 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 95.42 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.42 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 95.41 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 95.4 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 95.39 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.39 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 95.39 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.37 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 95.37 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 95.36 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.36 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 95.36 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 95.36 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 95.35 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.35 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 95.33 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 95.33 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.31 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.31 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 95.3 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 95.29 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 95.29 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 95.29 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 95.29 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 95.27 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 95.27 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.26 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 95.24 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 95.24 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 95.22 | |
| 3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 95.19 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 95.19 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.17 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 95.17 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.16 |
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-50 Score=340.93 Aligned_cols=262 Identities=38% Similarity=0.591 Sum_probs=245.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
++|||+|||+|+||++|+.+|.++|+ ++.+|++| +|++++++++.+ .|+..+.++.++++++|+||+||||+.+.++
T Consensus 2 ~~~~I~iIG~G~mG~aia~~l~~~g~-~~~~V~v~-dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p~~~~~v 79 (280)
T 3tri_A 2 NTSNITFIGGGNMARNIVVGLIANGY-DPNRICVT-NRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKPHQIKMV 79 (280)
T ss_dssp CCSCEEEESCSHHHHHHHHHHHHTTC-CGGGEEEE-CSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCGGGHHHH
T ss_pred CCCEEEEEcccHHHHHHHHHHHHCCC-CCCeEEEE-eCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCHHHHHHH
Confidence 56899999999999999999999996 66689999 999999999887 5998888888999999999999999999999
Q ss_pred HHHhchh-cCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeE
Q 024121 88 AMQIRPL-LSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIW 165 (272)
Q Consensus 88 ~~~l~~~-l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~ 165 (272)
++++.++ ++++++|||+++|++.+.+++.++ +.+++|+|||+|..++.|.+.+++++..++++.+.++++|+.+|+.+
T Consensus 80 l~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~~l~~~~~~~~~~~~~v~~l~~~iG~~~ 159 (280)
T 3tri_A 80 CEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFANETVDKDQKNLAESIMRAVGLVI 159 (280)
T ss_dssp HHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHGGGEEEE
T ss_pred HHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHhcCccEEEEeCCCCCHHHHHHHHHHHHHCCCeE
Confidence 9999998 888889999999999999999887 47899999999999999999999888889999999999999999876
Q ss_pred Ec-CcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHH
Q 024121 166 RA-DEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 242 (272)
Q Consensus 166 ~~-~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~ 242 (272)
++ +|+++|.+++++ +|+|++.+++++.+++.+.|++++++++++.+++.|+.+++.+++.+|..|++++++|||+|+
T Consensus 160 ~v~~E~~~d~~talsgsgpa~~~~~~eal~~a~v~~Gl~~~~a~~l~~~t~~G~a~~~~~~~~~p~~l~~~v~spgGtT~ 239 (280)
T 3tri_A 160 WVSSEDQIEKIAALSGSGPAYIFLIMEALQEAAEQLGLTKETAELLTEQTVLGAARMALETEQSVVQLRQFVTSPGGTTE 239 (280)
T ss_dssp ECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHCCTTSHHH
T ss_pred EECCHHHhhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhccCCChHHH
Confidence 65 788999999988 899999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 243 AGIHELEKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 243 ~~l~~l~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
++++.|+++||+..+.++++++++|++||+
T Consensus 240 ~~l~~le~~g~~~~~~~av~aa~~r~~el~ 269 (280)
T 3tri_A 240 QAIKVLESGNLRELFIKALTAAVNRAKELS 269 (280)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999974
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=300.85 Aligned_cols=242 Identities=35% Similarity=0.618 Sum_probs=196.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
+|||+|||+|+||.+|+++|.++|+.++.+|++| +|++++++++.+ .|+..+.++.++++++|+||+|||++++++++
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~-~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~~~~~~v~ 80 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICS-DLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKPDLYASII 80 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEE-CSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCTTTHHHHC
T ss_pred CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEE-eCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCHHHHHHHH
Confidence 4799999999999999999999997666789999 999999998876 69988888899999999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEc
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRA 167 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 167 (272)
+++.++++++++|||++++++.+.+++.++ +.++++.||+.|...+.|.+.+++++..+++.++.++++|+.+|..+++
T Consensus 81 ~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~ 160 (247)
T 3gt0_A 81 NEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPALVGEGMSALCPNEMVTEKDLEDVLNIFNSFGQTEIV 160 (247)
T ss_dssp ---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHGGGEEEEEC
T ss_pred HHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence 999999989999999999999999998886 4689999999999999998888888778999999999999999998778
Q ss_pred CcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHH
Q 024121 168 DEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245 (272)
Q Consensus 168 ~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l 245 (272)
+|+.++.+++++ +|+|++.+++++.+++++.|+|++++++++.+++.|+++++.+++.+|..|+++++||||+|++++
T Consensus 161 ~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~~gs~~~~~~~~~~p~~l~~~v~spgG~t~~gl 240 (247)
T 3gt0_A 161 SEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGTTIEAV 240 (247)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSCC--------------------
T ss_pred CHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcCCCCchHHHHH
Confidence 999999999887 899999999999999999999999999999999999999998889999999999999999999999
Q ss_pred HHHHhCC
Q 024121 246 HELEKSG 252 (272)
Q Consensus 246 ~~l~~~~ 252 (272)
+.||++|
T Consensus 241 ~~le~~~ 247 (247)
T 3gt0_A 241 ATLEEKG 247 (247)
T ss_dssp -------
T ss_pred HHHHhCc
Confidence 9999864
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-42 Score=296.29 Aligned_cols=268 Identities=45% Similarity=0.710 Sum_probs=235.5
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHHcCceeecCchhhhccCCEEEEeeCc
Q 024121 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~ 81 (272)
-+.++++|||+|||+|+||++|+.+|.++|+.+..+|++| +|+++ +.+.+.+.|+.+..++.++++++|+||+|||+
T Consensus 16 ~~~~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~-~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~~ 94 (322)
T 2izz_A 16 ENLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMAS-SPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKP 94 (322)
T ss_dssp ------CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEE-CSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSCG
T ss_pred chhccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEE-CCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeCH
Confidence 3456677899999999999999999999992111299999 99986 78888778998888888889999999999999
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC----CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHH
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG----HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKL 157 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~----~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~l 157 (272)
+++.+++.++.+.++++++|||++++++.+.+++.++ ..++++.+|+.|.....|.+++++++..+++..+.++++
T Consensus 95 ~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~~v~~~g~~~~~~~~~~v~~l 174 (322)
T 2izz_A 95 HIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQL 174 (322)
T ss_dssp GGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 9999999999988888999999999999887776653 357899999999988888888888876778999999999
Q ss_pred hhhcCCeEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcC
Q 024121 158 FGSVGKIWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVA 235 (272)
Q Consensus 158 l~~~G~~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~ 235 (272)
|+.+|..+++.++.++.+++++ +|+|++.+++++.+++.+.|++++++++++.+++.++.+++.+++..|..|++.++
T Consensus 175 l~~~G~~~~~~e~~~~~~~a~~g~gpa~~~~~~eala~a~~~~Gl~~~~a~~l~~~~~~g~~~~~~~~~~~p~~l~~~v~ 254 (322)
T 2izz_A 175 LSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVS 254 (322)
T ss_dssp HHTTEEEEECCGGGHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHC
T ss_pred HHhCCCEEEeCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCC
Confidence 9999977777889999999887 89999999999999999999999999999999999999888766678999999999
Q ss_pred CCcchHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 236 SPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 236 ~~~g~t~~~l~~l~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
+|+|+|+.+++.+++.+|+..+.+++.++++|++|++
T Consensus 255 sp~g~t~~~l~~l~~~g~~~~~~~av~~~~~ra~e~~ 291 (322)
T 2izz_A 255 SPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQ 291 (322)
T ss_dssp CTTSHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999863
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=272.42 Aligned_cols=254 Identities=32% Similarity=0.560 Sum_probs=229.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
++|||+|||+|.||.+++..|.+.|+ +|.+| +|++++.+.+.+ .|+..+.+..++++++|+||+|+|++.+.++
T Consensus 2 ~~m~i~iiG~G~mG~~~a~~l~~~g~----~v~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~~~~~~~v 76 (259)
T 2ahr_A 2 NAMKIGIIGVGKMASAIIKGLKQTPH----ELIIS-GSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQLFETV 76 (259)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTSSC----EEEEE-CSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGGGHHHH
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCC----eEEEE-CCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeCcHhHHHH
Confidence 45799999999999999999999998 99999 999999988876 5888777888888999999999999998888
Q ss_pred HHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 024121 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR 166 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~ 166 (272)
+.++ .+++++|++.++++.+.+++.++ +.++++.+|++|...+.|.+.++++...+++..+.++++|+.+|+.++
T Consensus 77 ~~~l----~~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~G~~~~ 152 (259)
T 2ahr_A 77 LKPL----HFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFD 152 (259)
T ss_dssp HTTS----CCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTEEEEE
T ss_pred HHHh----ccCCEEEEeCCCCCHHHHHHhcCCCCCEEEEcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 8765 37889999988999988888877 358899999999988888877777766789999999999999997688
Q ss_pred cCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHH
Q 024121 167 ADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 244 (272)
Q Consensus 167 ~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~ 244 (272)
+++++++.+++++ +|+|++.+.+++.+++.+.|+|++++++++.+++.++.+++.+++.+|..|.+.+++|+|+|+.+
T Consensus 153 ~~~~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~p~~~~~~~ 232 (259)
T 2ahr_A 153 ISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAG 232 (259)
T ss_dssp CCGGGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHCCTTSHHHHH
T ss_pred ecHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChhHHHH
Confidence 8999999999876 88999999999999999999999999999999999999888766667999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 245 IHELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 245 l~~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
++.|++.||+..+.++++++++|++||
T Consensus 233 ~~~l~~~g~~~~~~~a~~~~~~r~~~~ 259 (259)
T 2ahr_A 233 LMELERLGLTATVSSAIDKTIDKAKSL 259 (259)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCChHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999986
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=271.26 Aligned_cols=257 Identities=37% Similarity=0.624 Sum_probs=228.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
|++|||+|||+|+||++|+.+|.++|+.++.+|++| +|++++ .|+.+..++.++++++|+||+|||+++++++
T Consensus 2 m~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~-~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~v 74 (262)
T 2rcy_A 2 MENIKLGFMGLGQMGSALAHGIANANIIKKENLFYY-GPSKKN------TTLNYMSSNEELARHCDIIVCAVKPDIAGSV 74 (262)
T ss_dssp CSSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEE-CSSCCS------SSSEECSCHHHHHHHCSEEEECSCTTTHHHH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEE-eCCccc------CceEEeCCHHHHHhcCCEEEEEeCHHHHHHH
Confidence 356899999999999999999999992111299999 999876 5788777888888999999999999999999
Q ss_pred HHHhchhcCCCCEEEEEcCCCCHHHHHHHhCC-CCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 024121 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGH-SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR 166 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~-~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~ 166 (272)
+.++.+++ +++++++++++++.+.+++.++. .++++++|++|...+.|.+.+++++..+++..+.++++|+.+|..++
T Consensus 75 ~~~l~~~l-~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~~~~~~~~~~~~~ll~~~G~~~~ 153 (262)
T 2rcy_A 75 LNNIKPYL-SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHE 153 (262)
T ss_dssp HHHSGGGC-TTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHhc-CCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 99998888 67889999999999988888874 36889999999988888777777766788999999999999998777
Q ss_pred cCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHH
Q 024121 167 ADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 244 (272)
Q Consensus 167 ~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~ 244 (272)
++++.++.+++++ +|++++.+++++.+++.+.|++++.+.+++.+++.++.++..+++.+|.+|.+.+.+|+++++++
T Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~al~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~t~~~~ 233 (262)
T 2rcy_A 154 IKEKDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLKDNIVSPGGITAVG 233 (262)
T ss_dssp CCGGGHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHCCTTSHHHHH
T ss_pred eCHHHccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCChHHHHH
Confidence 8988899999887 89999999999999899999999999999999999999887655678999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 245 IHELEKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 245 l~~l~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
++.|++.+|+..+.++++++++|++|++
T Consensus 234 l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 261 (262)
T 2rcy_A 234 LYSLEKNSFKYTVMNAVEAACEKSKAMG 261 (262)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999975
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-38 Score=263.75 Aligned_cols=253 Identities=31% Similarity=0.534 Sum_probs=228.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
|||+|||+|+||++++.+|.++| + +|++| +|++++.+.+.+ .|+....+..+++ ++|+||+|||++++++++
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~----~v~~~-~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~~~~~~~v~ 74 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGY----RIYIA-NRGAEKRERLEKELGVETSATLPELH-SDDVLILAVKPQDMEAAC 74 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSC----EEEEE-CSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSCHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCC----eEEEE-CCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeCchhHHHHH
Confidence 68999999999999999999999 8 99999 999999998887 4888887888888 999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHHHHhCC-CCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEc
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTGH-SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRA 167 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~-~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 167 (272)
.++.+ + +++|+|++++++.+.+++.++. .++++.+|+.|...+.|.+.++++...+++..+.++++|+.+|..+++
T Consensus 75 ~~l~~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~~g~~~~~ 151 (263)
T 1yqg_A 75 KNIRT--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWL 151 (263)
T ss_dssp TTCCC--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEEEEC
T ss_pred HHhcc--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEEcCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence 88776 4 8899998899999888888873 578888999998888888777777666889999999999999966677
Q ss_pred C-cccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHH
Q 024121 168 D-EKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 244 (272)
Q Consensus 168 ~-e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~ 244 (272)
+ ++.++.++++. ++++++.+++++.+.+.+.|++++++.+++.+++.++.+++.+++.+|..|.+.+++|+|+|..+
T Consensus 152 ~~~~~~~~~~al~g~~~~~~~~~~~~l~e~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (263)
T 1yqg_A 152 DDEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSKGGTTHEA 231 (263)
T ss_dssp SSTTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTCCTTSHHHHH
T ss_pred CChhhccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCChhHHHH
Confidence 7 88899999987 89999999999999999999999999999999999999888766777999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 245 IHELEKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 245 l~~l~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
++.|++.+++..+.+++.++++|++|++
T Consensus 232 l~~l~~~~~~~~~~~a~~~~~~~~~~~~ 259 (263)
T 1yqg_A 232 VEAFRRHRVAEAISEGVCACVRRSQEME 259 (263)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999863
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=230.46 Aligned_cols=248 Identities=13% Similarity=0.121 Sum_probs=202.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc--eeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
|||+|||+|+||++++..|.+.|+ +|++| +|++++.+.+.+.|+ ....++.++ .++|+||+|||++.+.+++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~~~~~~~ 74 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGH----YLIGV-SRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQLILPTL 74 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHHHHHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHHHHHHHH
Confidence 689999999999999999999999 99999 999999988877776 355677787 8999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCc------hhhh----cCC-ceEEEeCCCCCHHHHHHHHH
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNT------PSAV----GEA-ATVMSLGGTATEEDGELIGK 156 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~------~~~~----~~g-~~~~~~~~~~~~~~~~~v~~ 156 (272)
.++.++++++++|+++ ++++...++.... ..+++..||.. |... ..+ .+.++++...+++..+.+++
T Consensus 75 ~~l~~~~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~v~~ 153 (279)
T 2f1k_A 75 EKLIPHLSPTAIVTDV-ASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRS 153 (279)
T ss_dssp HHHGGGSCTTCEEEEC-CSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHhhCCCCCEEEEC-CCCcHHHHHHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHHHHH
Confidence 9999988889999986 5566544433221 12555555532 2111 123 45666665668899999999
Q ss_pred HhhhcCC-eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 024121 157 LFGSVGK-IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLP--RELALGLASQTVLGAASMVTKSGKHPGQLK 231 (272)
Q Consensus 157 ll~~~G~-~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~--~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~ 231 (272)
+|+.+|. .+++++..++.+++++ +|++++. ++.+.+...|++ .+.+..++.+++.++.++.. .+|..|.
T Consensus 154 l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~---al~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~---~~p~~~~ 227 (279)
T 2f1k_A 154 VLEPLGVKIYLCTPADHDQAVAWISHLPVMVSA---ALIQACAGEKDGDILKLAQNLASSGFRDTSRVGG---GNPELGT 227 (279)
T ss_dssp HHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHH---HHHHHHHTCSCHHHHHHHHHHCCHHHHHHHTGGG---SCHHHHH
T ss_pred HHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHH---HHHHHHHhcccccchhHHHhhcCCcccchhcccC---CCHHHHH
Confidence 9999995 5778888899998887 5666554 777777788877 78889999999999988864 5899999
Q ss_pred HhcCCCcchHHHHHHHHHh--CCHHHHHH----HHHHHHHHHHhhc
Q 024121 232 DDVASPGGTTIAGIHELEK--SGFRGILM----NAVVAAAKRSREL 271 (272)
Q Consensus 232 ~~~~~~~g~t~~~l~~l~~--~~~~~~~~----~~~~~~~~r~~~~ 271 (272)
+.+++|+|+|+++++.|++ ++|+..+. +++.++++|++|+
T Consensus 228 ~~~~s~~~~~~~~l~~~~~~l~~~~~~i~~~d~~a~~~~~~~~~~~ 273 (279)
T 2f1k_A 228 MMATYNQRALLKSLQDYRQHLDQLITLISNQQWPELHRLLQQTNGD 273 (279)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999 89999999 9999999999986
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=219.69 Aligned_cols=251 Identities=16% Similarity=0.198 Sum_probs=196.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHHcCc--eeecCchhhhccCCEEEEeeCccc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~aDivil~v~~~~ 83 (272)
|++|||+|||+|+||++++.+|.++ |+ +|++| +|++++.+.+.+.|+ ..+.++.++++++|+||+|||++.
T Consensus 4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~----~V~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~ 78 (290)
T 3b1f_A 4 MEEKTIYIAGLGLIGASLALGIKRDHPHY----KIVGY-NRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK 78 (290)
T ss_dssp GCCCEEEEECCSHHHHHHHHHHHHHCTTS----EEEEE-CSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH
T ss_pred cccceEEEEeeCHHHHHHHHHHHhCCCCc----EEEEE-cCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH
Confidence 4678999999999999999999988 56 89999 999999888877776 456677788899999999999999
Q ss_pred HHHHHHHhchh-cCCCCEEEEEcCCCCH---HHHHHHhCC--CCEEEEccC------chhhh----cCCc-eEEEeCCCC
Q 024121 84 VKDVAMQIRPL-LSRKKLLVSVAAGVKL---KDLQEWTGH--SRFIRVMPN------TPSAV----GEAA-TVMSLGGTA 146 (272)
Q Consensus 84 ~~~v~~~l~~~-l~~~~~iis~~~~~~~---~~l~~~~~~--~~~~~~~p~------~~~~~----~~g~-~~~~~~~~~ 146 (272)
+.+++.++.++ ++++++|++++ +++. +.+++.++. .+++..||. .|... ..|. +.+++....
T Consensus 79 ~~~v~~~l~~~~l~~~~ivi~~~-~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~ 157 (290)
T 3b1f_A 79 TIDFIKILADLDLKEDVIITDAG-STKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLT 157 (290)
T ss_dssp HHHHHHHHHTSCCCTTCEEECCC-SCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTC
T ss_pred HHHHHHHHHhcCCCCCCEEEECC-CCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCC
Confidence 99999999888 88898888654 4433 566666652 345555554 22211 1343 556666666
Q ss_pred CHHHHHHHHHHhhhcCCe-EEcCcccchhHHHch---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Q 024121 147 TEEDGELIGKLFGSVGKI-WRADEKLFDAITGLS---GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTK 222 (272)
Q Consensus 147 ~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~ 222 (272)
+++..+.++++|+.+|.. ++++++.++..++.. ++.+.+.+++.+.+ .|++.+.++.+..+++.++.+++
T Consensus 158 ~~~~~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~s~~~~~~a~~~~~~~~~----~g~~~~~~~~la~~~~~~~~rla-- 231 (290)
T 3b1f_A 158 KPNTIPALQDLLSGLHARYVEIDAAEHDCVTSQISHFPHIIASSLMKQAGD----FSESHEMTKHFAAGGFRDMTRIA-- 231 (290)
T ss_dssp CTTHHHHHHHHTGGGCCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHH----HHHHCTHHHHHCCHHHHHTTGGG--
T ss_pred CHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHHHh----cccchhhHHhhccccHHhhhhhh--
Confidence 788999999999999965 678888888875544 45554455555543 45555678899999999998886
Q ss_pred cCCCHHHHHHhcCCCcchHHHHHHHHHh--CCHHHHHH----HHHHHHHHHHhhc
Q 024121 223 SGKHPGQLKDDVASPGGTTIAGIHELEK--SGFRGILM----NAVVAAAKRSREL 271 (272)
Q Consensus 223 ~~~~~~~l~~~~~~~~g~t~~~l~~l~~--~~~~~~~~----~~~~~~~~r~~~~ 271 (272)
+.+|..|++.+.+|++++.++++.|++ +.++..+. +++.+.++|++++
T Consensus 232 -~~~p~~~~~~~~~n~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~~ 285 (290)
T 3b1f_A 232 -ESEPGMWTSILLTNQEAVLDRIENFKQRLDEVSNLIKARDENAIWAFFNQSRQI 285 (290)
T ss_dssp -GSCHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 358999999999999999999999988 47888887 8888999988864
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=216.30 Aligned_cols=237 Identities=16% Similarity=0.242 Sum_probs=187.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
+|||+|||+ |+||++++.+|.+.|+ +|++| +|++++.+.+.+.|+... +..++++++|+||+|||++.+.+++
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~----~V~~~-~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~~~~~~~v~ 84 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAH----HLAAI-EIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALPDNIIEKVA 84 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSS----EEEEE-CCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSCHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCCchHHHHHH
Confidence 479999999 9999999999999999 99999 999999888887776654 6677889999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCchhh--------hcCC-------ceEEEeCCCCCHHHHHH
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSA--------VGEA-------ATVMSLGGTATEEDGEL 153 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~~~~--------~~~g-------~~~~~~~~~~~~~~~~~ 153 (272)
.++.+.++++++|+|++++.+.+.+++..++.++++.||+.|.. ...| ...++.+...+++..+.
T Consensus 85 ~~l~~~l~~~~ivv~~s~~~~~~~l~~~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~~~~ 164 (286)
T 3c24_A 85 EDIVPRVRPGTIVLILDAAAPYAGVMPERADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAI 164 (286)
T ss_dssp HHHGGGSCTTCEEEESCSHHHHHTCSCCCTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTHHHHH
T ss_pred HHHHHhCCCCCEEEECCCCchhHHHHhhhCCCeEEecCCCCccccccccchhhccCcccccccceeeeeccCCCHHHHHH
Confidence 99998888999999987776655555433346789999987655 5566 34343322357889999
Q ss_pred HHHHhhhcCC----eEEcCcccchhH-HHch---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 024121 154 IGKLFGSVGK----IWRADEKLFDAI-TGLS---GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGK 225 (272)
Q Consensus 154 v~~ll~~~G~----~~~~~e~~~~~~-~~~~---~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~ 225 (272)
++++|+.+|. .+++++++++.+ ++++ ++.|++.++|++.+++.+.|++++++.+++.+++.++..++.+ .
T Consensus 165 v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~--~ 242 (286)
T 3c24_A 165 GADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHLNVEIAMWFG--Y 242 (286)
T ss_dssp HHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTT--S
T ss_pred HHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--h
Confidence 9999999997 477898888888 5554 6788888999999888888999999999999999999877654 5
Q ss_pred CHHHHHHhcCCCcchHHHHHHH-HHhCCHHHHHH
Q 024121 226 HPGQLKDDVASPGGTTIAGIHE-LEKSGFRGILM 258 (272)
Q Consensus 226 ~~~~l~~~~~~~~g~t~~~l~~-l~~~~~~~~~~ 258 (272)
+|..|.+....+ ++.++. +++.+++..+.
T Consensus 243 ~p~~~~di~~~~----i~~~~~~l~~~~~~~~~~ 272 (286)
T 3c24_A 243 SPKVPSDAALRL----MEFAKDIVVKEDWREALN 272 (286)
T ss_dssp SCCC---CCSTT----HHHHHHHHBCTTGGGGGC
T ss_pred CCchhHHHHHHH----HHHHHHHHhccCHHHhcC
Confidence 677888777666 444444 55666655444
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=217.73 Aligned_cols=250 Identities=18% Similarity=0.232 Sum_probs=197.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc--eeecCchh-hhccCCEEEEeeCcccHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNA-VVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~--~~~~~~~~-~~~~aDivil~v~~~~~~~ 86 (272)
.|||+|||+|+||.+|+.+|.++|+ ..+|++| ||++++.+.+.+.|+ ..+.++.+ ++++||+||+|||++.+.+
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~--~~~V~~~-dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~~~~ 109 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGF--KGKIYGY-DINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFRE 109 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTC--CSEEEEE-CSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGGHHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCC--CCEEEEE-ECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHHHHH
Confidence 4799999999999999999999997 2379999 999999988888887 45677788 8999999999999999999
Q ss_pred HHHHhchhcCCCCEEEEEcCCCC---HHHHHHHhCCCCEEEEccCchhhh----------cCC-ceEEEeCCCCCHHHHH
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTGHSRFIRVMPNTPSAV----------GEA-ATVMSLGGTATEEDGE 152 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~---~~~l~~~~~~~~~~~~~p~~~~~~----------~~g-~~~~~~~~~~~~~~~~ 152 (272)
++.++.++++++++|++++ +++ .+.+++.++. +++..||..+... ..| .+++++++..+++.++
T Consensus 110 vl~~l~~~l~~~~iv~d~~-Svk~~~~~~~~~~l~~-~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~~~~~ 187 (314)
T 3ggo_A 110 IAKKLSYILSEDATVTDQG-SVKGKLVYDLENILGK-RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLK 187 (314)
T ss_dssp HHHHHHHHSCTTCEEEECC-SCCTHHHHHHHHHHGG-GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCHHHHH
T ss_pred HHHHHhhccCCCcEEEECC-CCcHHHHHHHHHhcCC-CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCHHHHH
Confidence 9999999999999988864 444 3456666653 7787777643211 133 4566776677899999
Q ss_pred HHHHHhhhcCC-eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 024121 153 LIGKLFGSVGK-IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQ 229 (272)
Q Consensus 153 ~v~~ll~~~G~-~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~ 229 (272)
.++++|+.+|. .+++++++||.+++++ +|++++. ++.....+.+.+.+++.++..++|+++++++. .+|.+
T Consensus 188 ~v~~l~~~~G~~v~~~~~~~hD~~~a~~s~lph~~a~---~l~~~~~~~~~~~~~~~~~a~~~frd~tRia~---~~p~~ 261 (314)
T 3ggo_A 188 LVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAF---ALVDTLIHMSTPEVDLFKYPGGGFKDFTRIAK---SDPIM 261 (314)
T ss_dssp HHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHH---HHHHHHHHHCCSSCCGGGCCTTTTTTHHHHTT---SCHHH
T ss_pred HHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCcchHHHHhhccccHHHHHHHhc---CCHHH
Confidence 99999999996 4789999999999988 7887654 33334445565566677888899999988864 58999
Q ss_pred HHHhcCCCcchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024121 230 LKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 230 l~~~~~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~~~r~~~ 270 (272)
|.+.+.+|.....+.++.+++. .+...+. +.+.+.++++++
T Consensus 262 w~di~~~N~~~~~~~l~~~~~~l~~l~~~l~~~d~~~l~~~~~~a~~ 308 (314)
T 3ggo_A 262 WRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKI 308 (314)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999988888888888765 5555555 567777777665
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=210.11 Aligned_cols=253 Identities=15% Similarity=0.171 Sum_probs=185.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v 87 (272)
+|+||||||+|+||.+|+++|+++|| +|++| ||++++.+.+.+.|+..+.++.|+++++|+||+|||++ ++++|
T Consensus 2 ~M~kIgfIGlG~MG~~mA~~L~~~G~----~v~v~-dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V 76 (300)
T 3obb_A 2 HMKQIAFIGLGHMGAPMATNLLKAGY----LLNVF-DLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGL 76 (300)
T ss_dssp -CCEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHH
T ss_pred CcCEEEEeeehHHHHHHHHHHHhCCC----eEEEE-cCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHH
Confidence 46799999999999999999999999 99999 99999999999999999999999999999999999865 68888
Q ss_pred HHH---hchhcCCCCEEEEEcCCCCHHH---HHHHhC--CCCEEEE-ccCchhhhcCCc-eEEEeCCCCCHHHHHHHHHH
Q 024121 88 AMQ---IRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRV-MPNTPSAVGEAA-TVMSLGGTATEEDGELIGKL 157 (272)
Q Consensus 88 ~~~---l~~~l~~~~~iis~~~~~~~~~---l~~~~~--~~~~~~~-~p~~~~~~~~g~-~~~~~~~~~~~~~~~~v~~l 157 (272)
+.. +.+.++++++||+++ +++++. +.+.+. +..++.+ +.+.|.....|. ++++.| +++.+++++++
T Consensus 77 ~~~~~g~~~~~~~g~iiId~s-T~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG---~~~~~~~~~p~ 152 (300)
T 3obb_A 77 YLDDDGLLAHIAPGTLVLECS-TIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGG---DAEALEKARPL 152 (300)
T ss_dssp HHSSSSSTTSCCC-CEEEECS-CCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEES---CHHHHHHHHHH
T ss_pred HhchhhhhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeC---CHHHHHHHHHH
Confidence 854 677788999999874 455543 344442 3344432 112344444554 555555 78999999999
Q ss_pred hhhcCC-eEEcCcccchhHHHchHHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhc---CCCHHHH
Q 024121 158 FGSVGK-IWRADEKLFDAITGLSGPAYIFLAIEALAD---GGVAAGLPRELALGLASQTVLGAASMVTKS---GKHPGQL 230 (272)
Q Consensus 158 l~~~G~-~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~---~~~~~~l 230 (272)
|+.+|+ .+++++......++++.+.+.+..+.++.| .+++.|+|++.+.+++..+..++..+-... +.....+
T Consensus 153 l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~ 232 (300)
T 3obb_A 153 FEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAP 232 (300)
T ss_dssp HHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSG
T ss_pred HHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchHHHhhccccchhhhcc
Confidence 999995 588888887888888744444444444444 468999999999999988776665443211 1112345
Q ss_pred HHhcCCCcchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhh
Q 024121 231 KDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRE 270 (272)
Q Consensus 231 ~~~~~~~~g~t~~~l~~l-------~~~~~~~~~~~~~~~~~~r~~~ 270 (272)
....++|++.....++.+ ++.++...+.+...+.|+++.+
T Consensus 233 ~~~~~~~~f~~~l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a~~ 279 (300)
T 3obb_A 233 ASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLK 279 (300)
T ss_dssp GGGTTCSSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred ccccCCccchHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence 566778888776655443 4457777778888888887765
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=208.34 Aligned_cols=250 Identities=16% Similarity=0.225 Sum_probs=191.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce--eecCchhhhc-cCCEEEEeeCcccHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNAVVE-YSDVVVFSVKPQVVKD 86 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~-~aDivil~v~~~~~~~ 86 (272)
+|||+|||+|+||.+++..|.+.|+ ..+|++| +|++++.+.+.+.|+. ...++.++++ ++|+||+|||++...+
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~g~--~~~V~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~~~~~ 77 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRSGF--KGKIYGY-DINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFRE 77 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTC--CSEEEEE-CSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHH
T ss_pred CcEEEEEecCHHHHHHHHHHHhcCC--CcEEEEE-eCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHHHHHH
Confidence 3689999999999999999999886 2369999 9999998888777764 3557778888 9999999999999999
Q ss_pred HHHHhchhcCCCCEEEEEcCCCC--HHHHHHHhCCCCEEEEccCc------hhhh----cCCc-eEEEeCCCCCHHHHHH
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVK--LKDLQEWTGHSRFIRVMPNT------PSAV----GEAA-TVMSLGGTATEEDGEL 153 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~--~~~l~~~~~~~~~~~~~p~~------~~~~----~~g~-~~~~~~~~~~~~~~~~ 153 (272)
++.++.++++++++|+++++... .+.+++.++. .++..||.. |... ..+. +++++....+++..+.
T Consensus 78 v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~-~~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~~~~ 156 (281)
T 2g5c_A 78 IAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKL 156 (281)
T ss_dssp HHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHH
T ss_pred HHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc-cceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHHHHHH
Confidence 99999888888888887644332 2455666652 355444421 1111 2454 5666655668899999
Q ss_pred HHHHhhhcCCe-EEcCcccchhHHHch--HHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 024121 154 IGKLFGSVGKI-WRADEKLFDAITGLS--GPAYI-FLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQ 229 (272)
Q Consensus 154 v~~ll~~~G~~-~~~~e~~~~~~~~~~--~~~~~-~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~ 229 (272)
++++|+.+|.. ++++++.++.+++++ +|+++ +.++++ ....|++.+.+..++.+++.++++++. .+|..
T Consensus 157 v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~r~~~---~~p~~ 229 (281)
T 2g5c_A 157 VKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALVDT----LIHMSTPEVDLFKYPGGGFKDFTRIAK---SDPIM 229 (281)
T ss_dssp HHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHH----HHHHCBTTBCGGGCCTTTGGGC---CC---SCHHH
T ss_pred HHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcccchHHHHhhccccHHHHhHHhc---CCHHH
Confidence 99999999965 678888889999988 67764 334443 444677777788889999999888864 58999
Q ss_pred HHHhcCCCcchHHHHHHHHHh--CCHHHHHH----HHHHHHHHHHhh
Q 024121 230 LKDDVASPGGTTIAGIHELEK--SGFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 230 l~~~~~~~~g~t~~~l~~l~~--~~~~~~~~----~~~~~~~~r~~~ 270 (272)
|.+.+++|+++|+++++.|++ ++++..+. +.+.+.++++++
T Consensus 230 ~~~~~~sn~~~~~~~l~~~~~~l~~~~~~i~~~d~~~l~~~~~~~~~ 276 (281)
T 2g5c_A 230 WRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKI 276 (281)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999998 68888875 567777777765
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-28 Score=205.41 Aligned_cols=231 Identities=16% Similarity=0.141 Sum_probs=177.5
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
++||+||| +|+||.+++..|.+.|+ +|++| +|+++. +..++++++|+||+|||++.+.+++
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~----~V~~~-~~~~~~-------------~~~~~~~~aDvVilavp~~~~~~vl 82 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGY----PISIL-DREDWA-------------VAESILANADVVIVSVPINLTLETI 82 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTC----CEEEE-CTTCGG-------------GHHHHHTTCSEEEECSCGGGHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCC----eEEEE-ECCccc-------------CHHHHhcCCCEEEEeCCHHHHHHHH
Confidence 46899999 99999999999999999 99999 998652 4567788999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHHH---HhCCCCEEEEccCchhh--hcCC-ceEEEeCCCCCHHHHHHHHHHhhhcC
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQE---WTGHSRFIRVMPNTPSA--VGEA-ATVMSLGGTATEEDGELIGKLFGSVG 162 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~~---~~~~~~~~~~~p~~~~~--~~~g-~~~~~~~~~~~~~~~~~v~~ll~~~G 162 (272)
.++.++++++++|+++ ++++...++. .++ .+++..||..... ...+ .++++++. +++..+.++++|+.+|
T Consensus 83 ~~l~~~l~~~~iv~~~-~svk~~~~~~~~~~~~-~~~v~~hP~~g~~~~~~~g~~~~l~~~~--~~~~~~~v~~l~~~~G 158 (298)
T 2pv7_A 83 ERLKPYLTENMLLADL-TSVKREPLAKMLEVHT-GAVLGLHPMFGADIASMAKQVVVRCDGR--FPERYEWLLEQIQIWG 158 (298)
T ss_dssp HHHGGGCCTTSEEEEC-CSCCHHHHHHHHHHCS-SEEEEEEECSCTTCSCCTTCEEEEEEEE--CGGGTHHHHHHHHHTT
T ss_pred HHHHhhcCCCcEEEEC-CCCCcHHHHHHHHhcC-CCEEeeCCCCCCCchhhcCCeEEEecCC--CHHHHHHHHHHHHHcC
Confidence 9999988888877765 5666544433 333 4566666532111 1223 34555543 6788899999999999
Q ss_pred Ce-EEcCcccchhHHHch--HHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH----HHHHHHhcCCCHHHHHHhc
Q 024121 163 KI-WRADEKLFDAITGLS--GPAYI-FLAIEALADGGVAAGLPRELALGLASQTVLG----AASMVTKSGKHPGQLKDDV 234 (272)
Q Consensus 163 ~~-~~~~e~~~~~~~~~~--~~~~~-~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g----~~~~~~~~~~~~~~l~~~~ 234 (272)
.. ++++++.++.+++++ +|+|+ +.+++++ .+.|++.+.+.++..++|.+ +.+++ +.+|..|.+.+
T Consensus 159 ~~~~~~~~~~~d~~~a~~~~~p~~~a~~l~~~l----~~~g~~~~~~~~la~~~f~~~~~~~~ria---~~~p~~~~di~ 231 (298)
T 2pv7_A 159 AKIYQTNATEHDHNMTYIQALRHFSTFANGLHL----SKQPINLANLLALSSPIYRLELAMIGRLF---AQDAELYADII 231 (298)
T ss_dssp CEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHH----TTSSCCHHHHHHTCCHHHHHHHHHHHHHH---TSCHHHHHHHH
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCCHHHHHhhcCHHHHHHHHHHHHHh---cCCHHHHHHHH
Confidence 65 778988999999988 78775 3344433 35899999999999999999 66665 46899999999
Q ss_pred CCCcchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024121 235 ASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 235 ~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~~~r~~~ 270 (272)
.+|+++++ +++.+++. .++..+. +++.+.++++++
T Consensus 232 ~sn~~~~~-~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~a~~ 272 (298)
T 2pv7_A 232 MDKSENLA-VIETLKQTYDEALTFFENNDRQGFIDAFHKVRD 272 (298)
T ss_dssp C----CHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCHHHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999 99999884 7777777 788888888775
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=211.86 Aligned_cols=227 Identities=15% Similarity=0.142 Sum_probs=178.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhcc----CCEEEEeeCcccH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY----SDVVVFSVKPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~----aDivil~v~~~~~ 84 (272)
..+||+|||+|+||.+|+++|.++|+ +|++| ||++++.+.+.+.|+..+.++.+++++ +|+||+|||++.+
T Consensus 7 ~~~kIgIIG~G~mG~slA~~L~~~G~----~V~~~-dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~ 81 (341)
T 3ktd_A 7 ISRPVCILGLGLIGGSLLRDLHAANH----SVFGY-NRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMTAI 81 (341)
T ss_dssp CSSCEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHH
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHHHH
Confidence 45789999999999999999999999 99999 999999988888898777787777654 7999999999999
Q ss_pred HHHHHHhchhcCCCCEEEEEcCCCCHH---HHHHHhCCCCEEEEccCchhh----------hcCC-ceEEEeCCCCCHH-
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTGHSRFIRVMPNTPSA----------VGEA-ATVMSLGGTATEE- 149 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~~~~~---~l~~~~~~~~~~~~~p~~~~~----------~~~g-~~~~~~~~~~~~~- 149 (272)
.+++.++.++ +++++|+++ ++++.. .+++.+++.+++..||..... ...+ .+++++++..+++
T Consensus 82 ~~vl~~l~~~-~~~~iv~Dv-~Svk~~i~~~~~~~~~~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~ 159 (341)
T 3ktd_A 82 DSLLDAVHTH-APNNGFTDV-VSVKTAVYDAVKARNMQHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTD 159 (341)
T ss_dssp HHHHHHHHHH-CTTCCEEEC-CSCSHHHHHHHHHTTCGGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCC
T ss_pred HHHHHHHHcc-CCCCEEEEc-CCCChHHHHHHHHhCCCCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChhh
Confidence 9999999886 788877765 566654 344433334677667643211 0112 3667766656667
Q ss_pred -------HHHHHHHHhhhcC-CeEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 024121 150 -------DGELIGKLFGSVG-KIWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASM 219 (272)
Q Consensus 150 -------~~~~v~~ll~~~G-~~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~ 219 (272)
.++.++++|+.+| +++++++++||.+++++ +|++++. ++...... +.+.+..+..++|++.+++
T Consensus 160 ~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia~---aL~~~~~~---~~~~~~~laa~gfrd~tRi 233 (341)
T 3ktd_A 160 INSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILAE---TLAIVGDN---GGALSLSLAAGSYRDSTRV 233 (341)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHH---HHHHHHHH---THHHHHHHCCHHHHHHTGG
T ss_pred hccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHHH---HHHHHhhc---chHHHHHHccccHHHHHHH
Confidence 8999999999999 56889999999999988 8888765 33333322 3567888999999999887
Q ss_pred HHhcCCCHHHHHHhcCCCcchHHHHHHHHHhC
Q 024121 220 VTKSGKHPGQLKDDVASPGGTTIAGIHELEKS 251 (272)
Q Consensus 220 ~~~~~~~~~~l~~~~~~~~g~t~~~l~~l~~~ 251 (272)
+. .+|.+|.+.+.+|.+...+.|+.+++.
T Consensus 234 a~---s~p~lw~di~~~N~~~~~~~l~~~~~~ 262 (341)
T 3ktd_A 234 AG---TDPGLVRAMCESNAGPLVKALDEALAI 262 (341)
T ss_dssp GG---SCHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hc---CCHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 54 589999999999988888888888665
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-27 Score=200.10 Aligned_cols=247 Identities=13% Similarity=0.193 Sum_probs=174.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHHH-
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVA- 88 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v~- 88 (272)
+||||||+|+||.+|+++|.++|| +|++| ||++++.+++.+.|+..+.++.|+++++|+||+|+|++ ++++++
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~----~V~v~-dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~ 80 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGY----ELVVW-NRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFS 80 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC----EEEEC--------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSC
T ss_pred CcEEEEecHHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHH
Confidence 589999999999999999999999 99999 99999999999899999999999999999999999875 456655
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHH---HHHHhC--CCCEEEE-ccCchhhhcCCc-eEEEeCCCCCHHHHHHHHHHhhhc
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRV-MPNTPSAVGEAA-TVMSLGGTATEEDGELIGKLFGSV 161 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~---l~~~~~--~~~~~~~-~p~~~~~~~~g~-~~~~~~~~~~~~~~~~v~~ll~~~ 161 (272)
..+.+.+++++++|+++ +++++. +.+.+. +..++.. ..+.|.....|. ++++.| +++.+++++++|+.+
T Consensus 81 ~~~~~~~~~~~iiid~s-T~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG---~~~~~~~~~~~l~~~ 156 (297)
T 4gbj_A 81 MELVEKLGKDGVHVSMS-TISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSG---NAGAKERIKPIVENF 156 (297)
T ss_dssp HHHHHHHCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEE---CHHHHHHHHHHHHTT
T ss_pred HHHHhhcCCCeEEEECC-CCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeeccc---chhHHHHHHHHHHHh
Confidence 45777788999999874 455543 333332 3344432 112333334454 455544 789999999999999
Q ss_pred CCe-EEcCc-ccchhHHHchHHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCC
Q 024121 162 GKI-WRADE-KLFDAITGLSGPAYIFLAIEALAD---GGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 236 (272)
Q Consensus 162 G~~-~~~~e-~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~ 236 (272)
|+. +++++ ......++++.+.+.+..+.++.| .+++.|+|++++++++..+..++..+-. ....+.+..+.
T Consensus 157 g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~~~----~~~~~~~~~~~ 232 (297)
T 4gbj_A 157 VKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIFQN----YGKLVASNTYE 232 (297)
T ss_dssp CSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHHHHH----HHHHHHHTCCC
T ss_pred hCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCchhhc----cCccccCCCCC
Confidence 965 77775 467777787744444444444444 4689999999999999887766554322 34566666667
Q ss_pred C-cchHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHhh
Q 024121 237 P-GGTTIAGIHE-------LEKSGFRGILMNAVVAAAKRSRE 270 (272)
Q Consensus 237 ~-~g~t~~~l~~-------l~~~~~~~~~~~~~~~~~~r~~~ 270 (272)
| ++.....++. -++.++.-.+.+.+.+.|+++.+
T Consensus 233 p~~f~~~l~~KDl~l~~~~A~~~g~~~p~~~~~~~~~~~a~~ 274 (297)
T 4gbj_A 233 PVAFRFPLGLKDINLTLQTASDVNAPMPFADIIRNRFISGLA 274 (297)
T ss_dssp SCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHh
Confidence 6 4555544443 35568888888888888888765
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-25 Score=192.41 Aligned_cols=256 Identities=16% Similarity=0.173 Sum_probs=182.9
Q ss_pred CCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc
Q 024121 3 AFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 3 ~~~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
++..+..+|||+|||+|.||.+|+++|.++|+ +|++| ||++++.+++.+.|+..+.++.++++++|+||+|||+.
T Consensus 2 ~m~~~~~~~~IgiIG~G~mG~~~A~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~ 76 (306)
T 3l6d_A 2 SLSDESFEFDVSVIGLGAMGTIMAQVLLKQGK----RVAIW-NRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDN 76 (306)
T ss_dssp CCCCCCCSCSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSH
T ss_pred CCCcccCCCeEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCH
Confidence 34555667899999999999999999999999 99999 99999999998889988889999999999999999976
Q ss_pred -cHHHHHH--HhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEE--ccCchhhhcCCceEEEeCCCCCHHHHHH
Q 024121 83 -VVKDVAM--QIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRV--MPNTPSAVGEAATVMSLGGTATEEDGEL 153 (272)
Q Consensus 83 -~~~~v~~--~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~--~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 153 (272)
++++++. .+.+ +.++++||++++..+. ..+.+.+. +.+++.. +...|.....+.++++.+ +++.++.
T Consensus 77 ~~~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg---~~~~~~~ 152 (306)
T 3l6d_A 77 HATHEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTG---DREAFEQ 152 (306)
T ss_dssp HHHHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEE---CHHHHHH
T ss_pred HHHHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcC---CHHHHHH
Confidence 5888886 5644 4689999987554332 23444332 3455543 112232222344555554 6889999
Q ss_pred HHHHhhhcC-CeEEc--Cc-ccchhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHhcCCCHH
Q 024121 154 IGKLFGSVG-KIWRA--DE-KLFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVL-GAASMVTKSGKHPG 228 (272)
Q Consensus 154 v~~ll~~~G-~~~~~--~e-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~-g~~~~~~~~~~~~~ 228 (272)
++++|+.+| +.+++ ++ .......+......+..+.|++. .+++.|+|++++.+++..+.. +.+.++.. ...
T Consensus 153 ~~~ll~~lg~~~~~~~~g~~~g~g~~~k~~~~~~~~~~~Ea~~-la~~~Gld~~~~~~~~~~~~~~~~s~~~~~---~~~ 228 (306)
T 3l6d_A 153 HRALLEGLAGHTVFLPWDEALAFATVLHAHAFAAMVTFFEAVG-AGDRFGLPVSKTARLLLETSRFFVADALEE---AVR 228 (306)
T ss_dssp HHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHhcCCEEEecCCCCccHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHHhhhhcccHHHHH---HHH
Confidence 999999996 55778 65 23333333111122334445544 578999999999999998863 44444432 234
Q ss_pred HHHHhcCCCcchHHH--------HHHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 229 QLKDDVASPGGTTIA--------GIHELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 229 ~l~~~~~~~~g~t~~--------~l~~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
.+.+..++|++++.. .++..++.|+...+.+++.+.|+++.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 279 (306)
T 3l6d_A 229 RLETQDFKGDQARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAM 279 (306)
T ss_dssp HHHHTCCCTTSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCCCcccHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Confidence 666677788765432 3556677899999999999999998764
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=191.02 Aligned_cols=251 Identities=14% Similarity=0.170 Sum_probs=181.7
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~ 84 (272)
...++|||+|||+|.||.+|+.+|.++|+ +|++| ||++++.+.+.+.|+..+.++.++++++|+||+|||. .++
T Consensus 17 ~~~~m~~I~iIG~G~mG~~~A~~l~~~G~----~V~~~-dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~ 91 (310)
T 3doj_A 17 RGSHMMEVGFLGLGIMGKAMSMNLLKNGF----KVTVW-NRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAA 91 (310)
T ss_dssp -CCCSCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHH
T ss_pred ccccCCEEEEECccHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHH
Confidence 34567899999999999999999999999 99999 9999999999989999888999999999999999986 578
Q ss_pred HHHH---HHhchhcCCCCEEEEEcCCCCHH---HHHHHhC--CCCEEEEcc--CchhhhcCCce-EEEeCCCCCHHHHHH
Q 024121 85 KDVA---MQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRVMP--NTPSAVGEAAT-VMSLGGTATEEDGEL 153 (272)
Q Consensus 85 ~~v~---~~l~~~l~~~~~iis~~~~~~~~---~l~~~~~--~~~~~~~~p--~~~~~~~~g~~-~~~~~~~~~~~~~~~ 153 (272)
++++ +++.+.++++++||+++ +++.. .+.+.+. +..++. +| ..+.....|.. +++++ +++.++.
T Consensus 92 ~~v~~~~~~l~~~l~~g~~vv~~s-t~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~a~~g~l~i~~gg---~~~~~~~ 166 (310)
T 3doj_A 92 LSVVFDKGGVLEQICEGKGYIDMS-TVDAETSLKINEAITGKGGRFVE-GPVSGSKKPAEDGQLIILAAG---DKALFEE 166 (310)
T ss_dssp HHHHHSTTCGGGGCCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEEEEEE---CHHHHHH
T ss_pred HHHHhCchhhhhccCCCCEEEECC-CCCHHHHHHHHHHHHHcCCEEEe-CCCCCChhHHhcCCeEEEEcC---CHHHHHH
Confidence 8998 78888888999999875 44443 3333332 234443 33 22333334443 44544 6889999
Q ss_pred HHHHhhhcCC-eEEcCcccchhHHHchHHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 024121 154 IGKLFGSVGK-IWRADEKLFDAITGLSGPAYIFLAIEALAD---GGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQ 229 (272)
Q Consensus 154 v~~ll~~~G~-~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~ 229 (272)
++++|+.+|. .+++++......++++.+.+....+..+.| .+++.|++++++.+++..+...+..+ .. ....
T Consensus 167 ~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~-~~---~~~~ 242 (310)
T 3doj_A 167 SIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMF-KG---KGPS 242 (310)
T ss_dssp HHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTCCHHH-HH---HHHH
T ss_pred HHHHHHHhCCCEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHH-HH---Hhhh
Confidence 9999999995 477877666666776644443333333333 46799999999999887654333221 11 1334
Q ss_pred HHHhcCCCcchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhh
Q 024121 230 LKDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRE 270 (272)
Q Consensus 230 l~~~~~~~~g~t~~~l~~l-------~~~~~~~~~~~~~~~~~~r~~~ 270 (272)
+.+..+.|++....+.+.+ ++.|+...+.+++.+.++++.+
T Consensus 243 ~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 290 (310)
T 3doj_A 243 MNKSSYPPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARS 290 (310)
T ss_dssp HHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCCccHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 5566667877655555444 6678888899999999888765
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-25 Score=189.94 Aligned_cols=248 Identities=14% Similarity=0.161 Sum_probs=178.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ecCchhhhccCCEEEEeeCcc-cHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSDNNAVVEYSDVVVFSVKPQ-VVKD 86 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~~~~~~~~~aDivil~v~~~-~~~~ 86 (272)
+.|||+|||+|.||.+|+.+|.++|+ +|++| ||++++.+.+.+.|+.. +.++.++++++|+||+|||+. .++.
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~ 80 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAGL----STWGA-DLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQ 80 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHH
Confidence 45899999999999999999999999 99999 99999999999888876 788899999999999999975 7888
Q ss_pred HH---HHhchhcCCCCEEEEEcCCCCHH---HHHHHhC--CCCEEEEcc--CchhhhcCCc-eEEEeCCCCCHHHHHHHH
Q 024121 87 VA---MQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRVMP--NTPSAVGEAA-TVMSLGGTATEEDGELIG 155 (272)
Q Consensus 87 v~---~~l~~~l~~~~~iis~~~~~~~~---~l~~~~~--~~~~~~~~p--~~~~~~~~g~-~~~~~~~~~~~~~~~~v~ 155 (272)
++ +++.+.++++++||++++ ++.. .+.+.+. +..++. +| ..|.....|. .+++++ +++.++.++
T Consensus 81 v~~~~~~l~~~l~~g~ivv~~st-~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~ 155 (303)
T 3g0o_A 81 VLFGEDGVAHLMKPGSAVMVSST-ISSADAQEIAAALTALNLNMLD-APVSGGAVKAAQGEMTVMASG---SEAAFTRLK 155 (303)
T ss_dssp HHC--CCCGGGSCTTCEEEECSC-CCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHHHTTCEEEEEEC---CHHHHHHHH
T ss_pred HHhChhhHHhhCCCCCEEEecCC-CCHHHHHHHHHHHHHcCCeEEe-CCCCCChhhhhcCCeEEEeCC---CHHHHHHHH
Confidence 88 778888899999998754 4443 3444333 234444 44 2344445555 444443 688999999
Q ss_pred HHhhhcCCe-EEcCc-ccchhHHHchHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 024121 156 KLFGSVGKI-WRADE-KLFDAITGLSGPAYIFL----AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQ 229 (272)
Q Consensus 156 ~ll~~~G~~-~~~~e-~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~ 229 (272)
++|+.+|+. +++++ .......+++.+.+... +.|++. .+++.|++++++.+++..+..++..+ .. ....
T Consensus 156 ~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~-l~~~~G~d~~~~~~~~~~~~~~s~~~-~~---~~~~ 230 (303)
T 3g0o_A 156 PVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMA-LAARAGIPLDVMYDVVTHAAGNSWMF-EN---RMQH 230 (303)
T ss_dssp HHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHTTSTTCCHHH-HH---HHHH
T ss_pred HHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHhcccCCHHH-Hh---hhHH
Confidence 999999954 67776 55556666653333322 333333 56799999999999987754333322 11 1223
Q ss_pred HHHhcCCCcchHHHH-------HHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 230 LKDDVASPGGTTIAG-------IHELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 230 l~~~~~~~~g~t~~~-------l~~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
+.+..++|++..... ++..++.|+...+.+++.+.++++.+.
T Consensus 231 ~~~~~~~~~~~~~~~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 279 (303)
T 3g0o_A 231 VVDGDYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNMFTSASNA 279 (303)
T ss_dssp HHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence 445556777765554 344477799999999999999988763
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=190.52 Aligned_cols=248 Identities=15% Similarity=0.164 Sum_probs=181.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v~ 88 (272)
+|||+|||+|+||.+|+.+|.++|+ +|++| ||++++.+.+.+.|+..+.++.++++++|+||+|||+. ++++++
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~ 75 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRAGF----DVTVW-NRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVC 75 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHHTC----CEEEE-CSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 3689999999999999999999999 99999 99999999998889998889999999999999999975 789998
Q ss_pred ---HHhchhcCCCCEEEEEcCCCCHH---HHHHHhC--CCCEEEEcc--CchhhhcCCc-eEEEeCCCCCHHHHHHHHHH
Q 024121 89 ---MQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRVMP--NTPSAVGEAA-TVMSLGGTATEEDGELIGKL 157 (272)
Q Consensus 89 ---~~l~~~l~~~~~iis~~~~~~~~---~l~~~~~--~~~~~~~~p--~~~~~~~~g~-~~~~~~~~~~~~~~~~v~~l 157 (272)
+++.+.++++++||++++ .+.. .+.+.+. +.+++.. | +.|.....|. ++++.+ +++.++.++++
T Consensus 76 ~~~~~l~~~l~~g~~vv~~st-~~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~l 150 (287)
T 3pdu_A 76 FGANGVLEGIGGGRGYIDMST-VDDETSTAIGAAVTARGGRFLEA-PVSGTKKPAEDGTLIILAAG---DQSLFTDAGPA 150 (287)
T ss_dssp HSTTCGGGTCCTTCEEEECSC-CCHHHHHHHHHHHHHTTCEEEEC-CEECCHHHHHHTCEEEEEEE---CHHHHHHTHHH
T ss_pred cCchhhhhcccCCCEEEECCC-CCHHHHHHHHHHHHHcCCEEEEC-CccCCHHHHhcCCEEEEEeC---CHHHHHHHHHH
Confidence 788888889999998754 4443 3333332 2344432 2 2344444455 444443 68899999999
Q ss_pred hhhcCC-eEEcCcccchhHHHchHHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Q 024121 158 FGSVGK-IWRADEKLFDAITGLSGPAYIFLAIEALAD---GGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDD 233 (272)
Q Consensus 158 l~~~G~-~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 233 (272)
|+.+|+ .+++++.......+++.+.+....+..+.| .+++.|++++++.+++..+...+. +... ....+.+.
T Consensus 151 l~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~~~~---~~~~~~~~ 226 (287)
T 3pdu_A 151 FAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANP-MFKG---KGQMLLSG 226 (287)
T ss_dssp HHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCH-HHHH---HHHHHHHT
T ss_pred HHHhCCCEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccCh-HHHh---hccccccC
Confidence 999996 477877666666666644444443334433 467999999999999887653333 2221 12345566
Q ss_pred cCCCcchHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 234 VASPGGTTIAGIHE-------LEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 234 ~~~~~g~t~~~l~~-------l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
.+.|++....+.+. .++.|+...+.+++.+.++++.+.
T Consensus 227 ~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 271 (287)
T 3pdu_A 227 EFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAA 271 (287)
T ss_dssp CCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence 66788766554443 366688888999999999988763
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-26 Score=195.03 Aligned_cols=249 Identities=16% Similarity=0.183 Sum_probs=185.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v 87 (272)
++|||+|||+|.||+.++..|.+.|+ +|++| + ++++.+.+.+.|+....++.++++++|+||+|||.. +++.+
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~-~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v 75 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGSPMAINLARAGH----QLHVT-T-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDV 75 (295)
T ss_dssp --CEEEECCCSTTHHHHHHHHHHTTC----EEEEC-C-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHH
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCC----EEEEE-c-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHH
Confidence 45899999999999999999999999 99999 9 888888888778877778888889999999999765 48888
Q ss_pred HH---HhchhcCCCCEEEEEcCCCC--HHHHHHHhCC--CCEEEEccC--chhhhcCCc-eEEEeCCCCCHHHHHHHHHH
Q 024121 88 AM---QIRPLLSRKKLLVSVAAGVK--LKDLQEWTGH--SRFIRVMPN--TPSAVGEAA-TVMSLGGTATEEDGELIGKL 157 (272)
Q Consensus 88 ~~---~l~~~l~~~~~iis~~~~~~--~~~l~~~~~~--~~~~~~~p~--~~~~~~~g~-~~~~~~~~~~~~~~~~v~~l 157 (272)
+. ++.+.++++++||+++++.+ .+.+.+.++. .+++.. |. .|.....|. .+++.+ +++..+.++++
T Consensus 76 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~a~~g~~~~~~~~---~~~~~~~~~~l 151 (295)
T 1yb4_A 76 LFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDA-PVSGGEIGAREGTLSIMVGG---EQKVFDRVKPL 151 (295)
T ss_dssp HHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHHHHTCEEEEEES---CHHHHHHHHHH
T ss_pred HhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEc-cCCCCHHHHHcCCeEEEECC---CHHHHHHHHHH
Confidence 87 78788889999998877642 3455555542 222221 21 122222344 344443 68889999999
Q ss_pred hhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Q 024121 158 FGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDD 233 (272)
Q Consensus 158 l~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 233 (272)
|+.+|.. ++.++.......++..+.+...+...+.|. +++.|++++++.+++..+..++..+.. .+..+.++
T Consensus 152 l~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~----~~~~~~~~ 227 (295)
T 1yb4_A 152 FDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEV----HGERMINR 227 (295)
T ss_dssp HHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSSCBHHHHH----HHHHHHTT
T ss_pred HHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHH----hhHHHhcC
Confidence 9999964 667776666666665444444444455554 789999999998888776654433321 35567777
Q ss_pred cCCCcchHHH-------HHHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 234 VASPGGTTIA-------GIHELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 234 ~~~~~g~t~~-------~l~~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
.++|++.++. .++..++.|+...+.+++.+.++|+.+.
T Consensus 228 ~~~~g~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 272 (295)
T 1yb4_A 228 TFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAAN 272 (295)
T ss_dssp CCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHc
Confidence 8889998887 7888899999999999999999999875
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-25 Score=190.61 Aligned_cols=252 Identities=18% Similarity=0.187 Sum_probs=185.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~~ 85 (272)
++..|||+|||+|.||++++..|.+.|+ +|++| +|++++.+.+.+.|+....++.++++++|+||+||| +.+++
T Consensus 27 ~~~~~~I~iIG~G~mG~~~a~~l~~~g~----~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~ 101 (316)
T 2uyy_A 27 TPTDKKIGFLGLGLMGSGIVSNLLKMGH----TVTVW-NRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAK 101 (316)
T ss_dssp CCCSSCEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHH
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHH
Confidence 3345899999999999999999999999 99999 999999988888888887788888899999999999 78899
Q ss_pred HHHHHh---chhcCCCCEEEEEcCCCC--HHHHHHHhC--CCCEEEE-ccCchhhhcCCceEEE-eCCCCCHHHHHHHHH
Q 024121 86 DVAMQI---RPLLSRKKLLVSVAAGVK--LKDLQEWTG--HSRFIRV-MPNTPSAVGEAATVMS-LGGTATEEDGELIGK 156 (272)
Q Consensus 86 ~v~~~l---~~~l~~~~~iis~~~~~~--~~~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~~~-~~~~~~~~~~~~v~~ 156 (272)
+++.++ .+.+.++++||+++++.+ .+.+.+.++ +..++.. +++.+...+.+...++ ++ +++..+.+++
T Consensus 102 ~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g---~~~~~~~v~~ 178 (316)
T 2uyy_A 102 DLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAG---DRGLYEDCSS 178 (316)
T ss_dssp HHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEE---CHHHHHHTHH
T ss_pred HHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCC---CHHHHHHHHH
Confidence 988764 367788999998866432 234555543 3345542 3444555556654444 43 5788899999
Q ss_pred HhhhcCCe-EEcCcccchhHHHch----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 024121 157 LFGSVGKI-WRADEKLFDAITGLS----GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 231 (272)
Q Consensus 157 ll~~~G~~-~~~~e~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~ 231 (272)
+|+.+|.. ++.++.......++. ...+...+.|++.. +++.|++++++.+++..+..++..+... .+..+.
T Consensus 179 ll~~~g~~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~l-a~~~G~~~~~~~~~~~~~~~~s~~~~~~---~~~~l~ 254 (316)
T 2uyy_A 179 CFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTL-AQVTGQSQQTLLDILNQGQLASIFLDQK---CQNILQ 254 (316)
T ss_dssp HHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHSTTCCHHHHHH---HHHHHH
T ss_pred HHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHcCCCCCHHHHHh---hHHhhc
Confidence 99999965 666654433333333 22344556666663 7899999999999888776555444321 344555
Q ss_pred HhcCCCcchHHH-------HHHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 232 DDVASPGGTTIA-------GIHELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 232 ~~~~~~~g~t~~-------~l~~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
++ ++|++.++. .++..++.|+...+.+++.+.++++.+.
T Consensus 255 ~~-~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~ 300 (316)
T 2uyy_A 255 GN-FKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKAL 300 (316)
T ss_dssp TC-CCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred CC-CCCCCcHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhc
Confidence 44 678887776 5566788899999999999999999875
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-25 Score=189.36 Aligned_cols=250 Identities=18% Similarity=0.227 Sum_probs=183.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~~~v~ 88 (272)
.|||+|||+|.||..++..|.+.|+ +|++| +|++++.+.+.+.|+....++.++++++|+||+|+| +.+++.++
T Consensus 5 ~m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~ 79 (299)
T 1vpd_A 5 TMKVGFIGLGIMGKPMSKNLLKAGY----SLVVS-DRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVA 79 (299)
T ss_dssp -CEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred cceEEEECchHHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHH
Confidence 3799999999999999999999999 99999 999999998888888888888888899999999998 56788888
Q ss_pred ---HHhchhcCCCCEEEEEcCCCC--HHHHHHHhC--CCCEEEE--ccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhh
Q 024121 89 ---MQIRPLLSRKKLLVSVAAGVK--LKDLQEWTG--HSRFIRV--MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFG 159 (272)
Q Consensus 89 ---~~l~~~l~~~~~iis~~~~~~--~~~l~~~~~--~~~~~~~--~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~ 159 (272)
+++.+.++++++||+++++.+ .+.+.+.++ +..++.. +++.+.....+.++++.+ +++..+.++++|+
T Consensus 80 ~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ll~ 156 (299)
T 1vpd_A 80 LGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGG---DKAIFDKYYDLMK 156 (299)
T ss_dssp HSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEES---CHHHHHHHHHHHH
T ss_pred hCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCC---CHHHHHHHHHHHH
Confidence 678788889999999877654 246666554 2344432 333444444445555554 6888999999999
Q ss_pred hcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcC
Q 024121 160 SVGKI-WRADEKLFDAITGLSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVA 235 (272)
Q Consensus 160 ~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~ 235 (272)
.+|.. ++.++.......++..+.+.+.+...+.|+ +++.|++++++.+++..+..++..+.. ..+.++.+. +
T Consensus 157 ~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~---~~~~~l~~~-~ 232 (299)
T 1vpd_A 157 AMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDA---KAPMVMDRN-F 232 (299)
T ss_dssp TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHH---HHHHHHTTC-C
T ss_pred HHcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCCHHHHH---hhhHhhcCC-C
Confidence 99954 666776667777766455555555555554 789999999999888876654433321 134444444 4
Q ss_pred CCcchHHHH-------HHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 236 SPGGTTIAG-------IHELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 236 ~~~g~t~~~-------l~~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
+|++..... ++..++.|+...+.+++.+.++++.+.
T Consensus 233 ~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~ 275 (299)
T 1vpd_A 233 KPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRAD 275 (299)
T ss_dssp CCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence 676654432 334566788889999999999988764
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.6e-25 Score=185.90 Aligned_cols=247 Identities=17% Similarity=0.191 Sum_probs=179.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccHHHHH-
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDVA- 88 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~~~v~- 88 (272)
|||+|||+|.||.+|+.+|.++|+ +|++| ||++++.+.+.+.|+..+.++.++++++|+||+||| +.++++++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~ 76 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGC----SVTIW-NRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCF 76 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHc
Confidence 799999999999999999999999 99999 999999999998999988899999999999999999 56899999
Q ss_pred --HHhchhcCCCCEEEEEcCCCCHHH---HHHHhC--CCCEEEEccC--chhhhcCCc-eEEEeCCCCCHHHHHHHHHHh
Q 024121 89 --MQIRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRVMPN--TPSAVGEAA-TVMSLGGTATEEDGELIGKLF 158 (272)
Q Consensus 89 --~~l~~~l~~~~~iis~~~~~~~~~---l~~~~~--~~~~~~~~p~--~~~~~~~g~-~~~~~~~~~~~~~~~~v~~ll 158 (272)
+++.+.++++++||++ ++++... +.+.+. +..++. +|. .|.....+. .+++.+ +++.++.++++|
T Consensus 77 ~~~~l~~~l~~~~~vi~~-st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll 151 (287)
T 3pef_A 77 GKHGVLEGIGEGRGYVDM-STVDPATSQRIGVAVVAKGGRFLE-APVSGSKKPAEDGTLIILAAG---DRNLYDEAMPGF 151 (287)
T ss_dssp STTCHHHHCCTTCEEEEC-SCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEEEEEE---CHHHHHHHHHHH
T ss_pred CcchHhhcCCCCCEEEeC-CCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHHHhcCCEEEEEeC---CHHHHHHHHHHH
Confidence 7888888899999987 4555443 333332 234443 332 233233444 444444 688999999999
Q ss_pred hhcCC-eEEcCcccchhHHHchHHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhc
Q 024121 159 GSVGK-IWRADEKLFDAITGLSGPAYIFLAIEALAD---GGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDV 234 (272)
Q Consensus 159 ~~~G~-~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~ 234 (272)
+.+|. .+++++.......+++.+.+....+..+.| .+++.|++++++.+++..+...+..+ .. ....+.+..
T Consensus 152 ~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~s~~~-~~---~~~~~~~~~ 227 (287)
T 3pef_A 152 EKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMF-AL---KGGLIRDRN 227 (287)
T ss_dssp HHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHH-HH---HHHHHHTTC
T ss_pred HHhCCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHH-HH---HhhhhhcCC
Confidence 99995 577887777777777633333332333333 46799999999999988754333222 21 133455566
Q ss_pred CCCcchHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 235 ASPGGTTIAGIHE-------LEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 235 ~~~~g~t~~~l~~-------l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
+.|++......+. -++.|+...+.+++.+.++++.+.
T Consensus 228 ~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 271 (287)
T 3pef_A 228 FAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAA 271 (287)
T ss_dssp CCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHc
Confidence 6787765544443 355588888888888888887653
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-25 Score=194.18 Aligned_cols=218 Identities=17% Similarity=0.178 Sum_probs=169.8
Q ss_pred CCC-CeEEEEcccHHHHHHHHHHHhC------CCCCCCcEEEEeCCC-HHHHHHHHHcCcee----ecCchhhhccCCEE
Q 024121 8 AES-FILGFIGAGKMAESIAKGVAKS------GVLPPDRICTAVHSN-LKRRDAFESIGVKV----LSDNNAVVEYSDVV 75 (272)
Q Consensus 8 ~~~-~~IgiIG~G~mG~~la~~l~~~------g~~~~~~V~v~~~r~-~~~~~~l~~~g~~~----~~~~~~~~~~aDiv 75 (272)
.+. +||+|||+|+||.+++++|.++ |+ +|.++ .|+ ....+...+.|+.. ..++.+++++||+|
T Consensus 51 L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~----~ViVg-~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVV 125 (525)
T 3fr7_A 51 FKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKIG-LRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLV 125 (525)
T ss_dssp TTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCC----EEEEE-ECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEE
T ss_pred hcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCC----EEEEE-eCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEE
Confidence 345 8999999999999999999999 98 88877 554 34445555678765 35788999999999
Q ss_pred EEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHH---HhC-CCCEEEEccCchhhh-------c-----CCce-
Q 024121 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE---WTG-HSRFIRVMPNTPSAV-------G-----EAAT- 138 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~---~~~-~~~~~~~~p~~~~~~-------~-----~g~~- 138 (272)
|++||++...+++.++.++++++++ ++.+.|+++..+++ .++ +.+++++||+.|... + .|.+
T Consensus 126 ILaVP~~~~~eVl~eI~p~LK~GaI-Ls~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~ 204 (525)
T 3fr7_A 126 LLLISDAAQADNYEKIFSHMKPNSI-LGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINS 204 (525)
T ss_dssp EECSCHHHHHHHHHHHHHHSCTTCE-EEESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCE
T ss_pred EECCChHHHHHHHHHHHHhcCCCCe-EEEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccCCccE
Confidence 9999999888899999999999987 57889999888775 344 578999999999886 4 6777
Q ss_pred EEEeCCCCCHHHHHHHHHHhhhcCCeEE--c---Cc---ccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 024121 139 VMSLGGTATEEDGELIGKLFGSVGKIWR--A---DE---KLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGL 208 (272)
Q Consensus 139 ~~~~~~~~~~~~~~~v~~ll~~~G~~~~--~---~e---~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~ 208 (272)
.++...+.+.+..+.+..++..+|.... . .| +.++..+.++ +|+| ++++.+.+.+.|++++.|+..
T Consensus 205 liAv~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtvLsG~~pAl----ieA~~d~lVe~G~~pe~Ay~~ 280 (525)
T 3fr7_A 205 SFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGI----VEALFRRYTEQGMDEEMAYKN 280 (525)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTTTTHHHHHH----HHHHHHHHHHTTCCHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhhhcCcHHHH----HHHHHHHHHHcCCCHHHHHHH
Confidence 5555556677899999999999996422 1 12 2455556666 5554 477888888999999999999
Q ss_pred HHHHHH-HHHHHHHhcCCCHHHHHHhcCCC
Q 024121 209 ASQTVL-GAASMVTKSGKHPGQLKDDVASP 237 (272)
Q Consensus 209 ~~~~~~-g~~~~~~~~~~~~~~l~~~~~~~ 237 (272)
..+.+. +..+++.+.|. ..+.+.++.+
T Consensus 281 ~~qel~~~i~~li~e~G~--~~m~~~~S~t 308 (525)
T 3fr7_A 281 TVEGITGIISKTISKKGM--LEVYNSLTEE 308 (525)
T ss_dssp HHHHHHTHHHHHHHHHCH--HHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHhHH--HHHHHHcCcH
Confidence 999988 88888877553 3455555443
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=190.27 Aligned_cols=246 Identities=15% Similarity=0.120 Sum_probs=180.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v~~ 89 (272)
|||+|||+|.||..++..|.+ |+ +|++| +|++++.+.+.+.|+.... +.++++++|+||+|||+. +++++++
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~----~V~~~-~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~~ 74 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RF----PTLVW-NRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVAE 74 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TS----CEEEE-CSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHHH
T ss_pred CeEEEEcccHHHHHHHHHHhC-CC----eEEEE-eCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHHH
Confidence 689999999999999999999 99 99999 9999998888777776655 778888999999999976 4888998
Q ss_pred HhchhcCCCCEEEEEcCCCC--HHHHHHHhC--CCCEEEEccC--chhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCC
Q 024121 90 QIRPLLSRKKLLVSVAAGVK--LKDLQEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK 163 (272)
Q Consensus 90 ~l~~~l~~~~~iis~~~~~~--~~~l~~~~~--~~~~~~~~p~--~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~ 163 (272)
++.+.++++++|++++++.+ .+.+.+.++ +..+++. |. .+.....|...++.+ .+++..+.++++| .+|.
T Consensus 75 ~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~ll-~~g~ 150 (289)
T 2cvz_A 75 ALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGAEAGTLTVMLG--GPEEAVERVRPFL-AYAK 150 (289)
T ss_dssp HHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHHHHTCEEEEEE--SCHHHHHHHGGGC-TTEE
T ss_pred HHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCChhHHhhCCeEEEEC--CCHHHHHHHHHHH-hhcC
Confidence 88888888999998755432 245555554 2345554 53 233334455333333 2688899999999 9996
Q ss_pred -eEEcCcccchhHHHchHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHhcCCCc
Q 024121 164 -IWRADEKLFDAITGLSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHP-GQLKDDVASPG 238 (272)
Q Consensus 164 -~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~-~~l~~~~~~~~ 238 (272)
.+++++.......+++.+.+...+...+.|. +.+.|++++++.+++..+..++ .++.. ..+ ..+.+++ +|+
T Consensus 151 ~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s-~~~~~--~~~~~~l~~~~-~~g 226 (289)
T 2cvz_A 151 KVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRS-NATEN--LIPQRVLTRAF-PKT 226 (289)
T ss_dssp EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCB-HHHHH--THHHHTTTSCC-CCS
T ss_pred CeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCC-HHHHH--hccchhhcCCC-CCC
Confidence 4666665555555555566655556666665 7899999999988887766544 33322 123 3444444 788
Q ss_pred chHHH-------HHHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 239 GTTIA-------GIHELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 239 g~t~~-------~l~~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
+.++. .++..++.|++..+.+++.+.++|+.++
T Consensus 227 ~~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~ 266 (289)
T 2cvz_A 227 FALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRE 266 (289)
T ss_dssp SBHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHc
Confidence 77763 4566788899999999999999999874
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=190.12 Aligned_cols=250 Identities=16% Similarity=0.186 Sum_probs=181.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~~~v 87 (272)
+.|||+|||+|.||..++..|.+.|+ +|++| +|++++.+.+.+.|+....++.++++++|+||+|+| +.+++.+
T Consensus 3 ~~~~i~iiG~G~~G~~~a~~l~~~g~----~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v 77 (301)
T 3cky_A 3 KSIKIGFIGLGAMGKPMAINLLKEGV----TVYAF-DLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETV 77 (301)
T ss_dssp -CCEEEEECCCTTHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHH
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHH
Confidence 45899999999999999999999999 99999 999999988888888887888888899999999996 5568888
Q ss_pred HH---HhchhcCCCCEEEEEcCCC--CHHHHHHHhC--CCCEEEEccCch--hhhcCCc-eEEEeCCCCCHHHHHHHHHH
Q 024121 88 AM---QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG--HSRFIRVMPNTP--SAVGEAA-TVMSLGGTATEEDGELIGKL 157 (272)
Q Consensus 88 ~~---~l~~~l~~~~~iis~~~~~--~~~~l~~~~~--~~~~~~~~p~~~--~~~~~g~-~~~~~~~~~~~~~~~~v~~l 157 (272)
+. ++.+.++++++||+++++. +.+.+.+.++ +.+++. .|..+ .....|. ++++.+ +++..+.++++
T Consensus 78 ~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~-~p~~~~~~~a~~g~~~~~~~g---~~~~~~~v~~l 153 (301)
T 3cky_A 78 MNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVD-APVSGGTKGAEAGTLTIMVGA---SEAVFEKIQPV 153 (301)
T ss_dssp HHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEE-CCEESHHHHHHHTCEEEEEES---CHHHHHHHHHH
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEE-ccCCCCHHHHHcCCeEEEECC---CHHHHHHHHHH
Confidence 85 7778888999999988776 3456666554 234443 23211 1122354 445544 68889999999
Q ss_pred hhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHH
Q 024121 158 FGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALAD---GGVAAGLPRELALGLASQTVLGAASMVTKSGKHP-GQLKD 232 (272)
Q Consensus 158 l~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~-~~l~~ 232 (272)
|+.+|.. ++.++.......++..+.+...+...+.| .+++.|++++++.+++..++.++..+... .+ ..+.+
T Consensus 154 l~~~g~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~ 230 (301)
T 3cky_A 154 LSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAK---MEKFIMSG 230 (301)
T ss_dssp HHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHH---CCCCCCTC
T ss_pred HHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHh---hhhhhhcC
Confidence 9999965 66676666666666533333323333333 37899999999999888776665544332 22 23334
Q ss_pred hcCCCcchHHHH-------HHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 233 DVASPGGTTIAG-------IHELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 233 ~~~~~~g~t~~~-------l~~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
++ +|++.++.. ++..++.|+...+.+++.+.++++.+.
T Consensus 231 ~~-~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~ 275 (301)
T 3cky_A 231 DF-AGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAM 275 (301)
T ss_dssp CC-SSSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred CC-CCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhc
Confidence 34 677766533 456677899999999999999998875
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-24 Score=185.33 Aligned_cols=247 Identities=15% Similarity=0.197 Sum_probs=178.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~~~v 87 (272)
++|||+|||+|.||.+|+.+|.+.|+ +|++| ||++++.+++.+.|+..+.++.++++++|+||+|||+ .+++++
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G~----~V~~~-dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v 104 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAGY----ALQVW-NRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDV 104 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCC----eEEEE-cCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHH
Confidence 46799999999999999999999999 99999 9999999999888999888999999999999999995 578888
Q ss_pred HH--HhchhcCCCCEEEEEcCCCCHH---HHHHHhC--CCCEEEEccC--chhhhcCCc-eEEEeCCCCCHHHHHHHHHH
Q 024121 88 AM--QIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRVMPN--TPSAVGEAA-TVMSLGGTATEEDGELIGKL 157 (272)
Q Consensus 88 ~~--~l~~~l~~~~~iis~~~~~~~~---~l~~~~~--~~~~~~~~p~--~~~~~~~g~-~~~~~~~~~~~~~~~~v~~l 157 (272)
+. ++.+.++++++||++++ .+.. .+.+.+. +..++.. |. .+.....|. .+++.+ +++.++.++++
T Consensus 105 ~~~~~~~~~l~~~~~vi~~st-~~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~l 179 (320)
T 4dll_A 105 LFAQGVAAAMKPGSLFLDMAS-ITPREARDHAARLGALGIAHLDT-PVSGGTVGAEQGTLVIMAGG---KPADFERSLPL 179 (320)
T ss_dssp HTTTCHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHHTTCEEEEC-CEECHHHHHHHTCEEEEEES---CHHHHHHHHHH
T ss_pred HcchhHHhhCCCCCEEEecCC-CCHHHHHHHHHHHHHcCCEEEeC-CCcCCHhHHhcCCeeEEeCC---CHHHHHHHHHH
Confidence 87 78888889999998754 4443 3333332 2344432 22 222223444 444544 68899999999
Q ss_pred hhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Q 024121 158 FGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALAD---GGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDD 233 (272)
Q Consensus 158 l~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 233 (272)
|+.+ .. +++++......++++.+.+....+..+.| .+++.|++++++.+++..+...+..+ . .....+.+.
T Consensus 180 l~~~-~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~-~---~~~~~~l~~ 254 (320)
T 4dll_A 180 LKVF-GRATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVL-Q---LHGQRMVER 254 (320)
T ss_dssp HHHH-EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTTCBHHH-H---THHHHHHTT
T ss_pred HHhc-CCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccccCHHH-H---HhhhhhccC
Confidence 9999 54 67777666666666644444333333333 46799999999999887665333222 2 123345555
Q ss_pred cCCCcchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhh
Q 024121 234 VASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRE 270 (272)
Q Consensus 234 ~~~~~g~t~~~l~~l-------~~~~~~~~~~~~~~~~~~r~~~ 270 (272)
.++|++......+.+ ++.|+...+.+++.+.++++.+
T Consensus 255 ~~~~gf~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 298 (320)
T 4dll_A 255 DFAPRARLSIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVE 298 (320)
T ss_dssp CCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence 667887665444443 6668888899999999988765
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=188.17 Aligned_cols=217 Identities=21% Similarity=0.220 Sum_probs=163.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
+.|+|+|||+|+||.+++.+|.+.|+ +|.+| +|++++ .+.+.+.|+.+. +..++++++|+||+|||++...++
T Consensus 15 ~~~~I~IIG~G~mG~alA~~L~~~G~----~V~~~-~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~~~~v 88 (338)
T 1np3_A 15 QGKKVAIIGYGSQGHAHACNLKDSGV----DVTVG-LRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEFQGRL 88 (338)
T ss_dssp HTSCEEEECCSHHHHHHHHHHHHTTC----CEEEE-CCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHHHHHH
T ss_pred cCCEEEEECchHHHHHHHHHHHHCcC----EEEEE-ECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHHHHHH
Confidence 45799999999999999999999998 99999 998765 455555788766 778889999999999999999999
Q ss_pred HH-HhchhcCCCCEEEEEcCCCCHHHHHHHh-C-CCCEEEEccCchhh-------hcCCceE-EEeCCCCCHHHHHHHHH
Q 024121 88 AM-QIRPLLSRKKLLVSVAAGVKLKDLQEWT-G-HSRFIRVMPNTPSA-------VGEAATV-MSLGGTATEEDGELIGK 156 (272)
Q Consensus 88 ~~-~l~~~l~~~~~iis~~~~~~~~~l~~~~-~-~~~~~~~~p~~~~~-------~~~g~~~-~~~~~~~~~~~~~~v~~ 156 (272)
+. ++.++++++++|+++ +|++. .+.... + +..+++.||+.|.. .+.|... +++....+++..+.++.
T Consensus 89 ~~~~i~~~l~~~~ivi~~-~gv~~-~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~~~ 166 (338)
T 1np3_A 89 YKEEIEPNLKKGATLAFA-HGFSI-HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALS 166 (338)
T ss_dssp HHHHTGGGCCTTCEEEES-CCHHH-HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHHHH
T ss_pred HHHHHHhhCCCCCEEEEc-CCchh-HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCCCCHHHHHHHHH
Confidence 98 999989999999875 66554 333333 2 24588999987754 3446554 46555557788899999
Q ss_pred HhhhcCC----eEEcCccc---chhHH---Hch--HHHHHHHHHHHHHHHHHHcCCCHHHH-------HHHHHHH-HHHH
Q 024121 157 LFGSVGK----IWRADEKL---FDAIT---GLS--GPAYIFLAIEALADGGVAAGLPRELA-------LGLASQT-VLGA 216 (272)
Q Consensus 157 ll~~~G~----~~~~~e~~---~~~~~---~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a-------~~~~~~~-~~g~ 216 (272)
+++.+|. .++++... .+.++ .++ +|++++..++. +.+.|++++.+ .+++.++ ..|.
T Consensus 167 l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~----l~~~Gl~~~~a~~e~~~~~~~~~~~~~~gg 242 (338)
T 1np3_A 167 YACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFET----LVEAGYAPEMAYFECLHELKLIVDLMYEGG 242 (338)
T ss_dssp HHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH----HHHTTCCHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHH----HHHcCCCHHHHHHHhhhHHHHHHHHHHhcC
Confidence 9999996 55565433 33443 334 57776655544 44689999988 6677777 4555
Q ss_pred -HHHHHhcCCCHHHHHHhcCCCc
Q 024121 217 -ASMVTKSGKHPGQLKDDVASPG 238 (272)
Q Consensus 217 -~~~~~~~~~~~~~l~~~~~~~~ 238 (272)
..+ +..+.+|.+|.+.+++|+
T Consensus 243 ~~~~-r~a~s~p~~~~d~~~~~~ 264 (338)
T 1np3_A 243 IANM-NYSISNNAEYGEYVTGPE 264 (338)
T ss_dssp HHHH-HHHSCHHHHHHHHHHHHH
T ss_pred HHHH-HHhcCCHHHHhhhhcCCc
Confidence 444 556778999999998886
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.3e-25 Score=184.94 Aligned_cols=220 Identities=15% Similarity=0.125 Sum_probs=151.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcE-EEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V-~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
+|||+|||+|+||.+|++.|.++ + +| .+| +|++++.+++.+ .|. .+.++.++++++|+||+|||++.+.++
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~-~----~v~~v~-~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~~~~v 74 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR-Y----EIGYIL-SRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRYIKTV 74 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC---------CCCEE-CSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTTHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHc-C----cEEEEE-eCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHHHHHH
Confidence 47899999999999999999988 8 88 599 999999888875 576 666777888899999999999999999
Q ss_pred HHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhc--CCceEEEeCCCCCHHHHHHHHHHhhhcC-C
Q 024121 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVG--EAATVMSLGGTATEEDGELIGKLFGSVG-K 163 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~--~g~~~~~~~~~~~~~~~~~v~~ll~~~G-~ 163 (272)
+.++. .++++|||++++++.+.+++... ..+.+..+|+.|.... .+......+ +++..+.++++|+.+| +
T Consensus 75 ~~~l~---~~~~ivi~~s~~~~~~~l~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~lG~~ 148 (276)
T 2i76_A 75 ANHLN---LGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSLEKALEMKDQIVFGLEG---DERGLPIVKKIAEEISGK 148 (276)
T ss_dssp HTTTC---CSSCCEEECCSSSCGGGGCSSSEEEEEECSCC--CTTGGGCGGGCCEEECC---CTTTHHHHHHHHHHHCSC
T ss_pred HHHhc---cCCCEEEECCCCCcHHHHHHhhccccchhhhcCCCchhHHHhCCCeEEEEe---ChHHHHHHHHHHHHhCCC
Confidence 98875 57889999887877776654311 0001112345444433 344444433 4567899999999999 5
Q ss_pred eEEcCcccc---hhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCc--
Q 024121 164 IWRADEKLF---DAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG-- 238 (272)
Q Consensus 164 ~~~~~e~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~-- 238 (272)
.++++++++ +..++++++...+.+.++. ..+.+.|++.+++. +.+++.++.+++.+.+ | .+.+++|.
T Consensus 149 ~~~v~~~~~~~~~~~~~l~~n~~~~~~~~a~-~~~~~~Gl~~~~a~--~~~l~~~~~~~~~~~g--p---~~~~tgP~~r 220 (276)
T 2i76_A 149 YFVIPSEKKKAYHLAAVIASNFPVALAYLSK-RIYTLLGLDEPELL--IHTLMKGVADNIKKMR--V---ECSLTGPVKR 220 (276)
T ss_dssp EEECCGGGHHHHHHHHHHHHTTHHHHHHHHH-HHHHTTTCSCHHHH--HHHHHHHHHHHHHHSC--G---GGGCCSHHHH
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCChHHHH--HHHHHHHHHHHHHhcC--h---HhhCCCCccc
Confidence 688887643 3444544222222222322 45678999999775 7788888888877654 3 77788998
Q ss_pred ---chHHHHHHHHHh
Q 024121 239 ---GTTIAGIHELEK 250 (272)
Q Consensus 239 ---g~t~~~l~~l~~ 250 (272)
++++.+++.|++
T Consensus 221 ~D~~t~~~~l~~l~~ 235 (276)
T 2i76_A 221 GDWQVVEEERREYEK 235 (276)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc
Confidence 899999999987
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.6e-24 Score=181.95 Aligned_cols=245 Identities=19% Similarity=0.184 Sum_probs=171.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC--HHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~--~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
++|||+|||+|.||.+|+.+|.++|+ .+|++| ||+ +++.+.+.+.|+..+.++.++++++|+||+|||++...+
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G~---~~V~~~-dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~ 98 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAGA---IDMAAY-DAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALE 98 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHSC---CEEEEE-CSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHH
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC---CeEEEE-cCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHH
Confidence 35799999999999999999999996 379999 997 577888888899888899999999999999999998888
Q ss_pred HHHHhchhcCCCCEEEEEcCCCCHH---HHHHHhC----CCCEEEE--ccCchhhhcCCceEEEeCCCCCHHHHHHHHHH
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG----HSRFIRV--MPNTPSAVGEAATVMSLGGTATEEDGELIGKL 157 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~~~---~l~~~~~----~~~~~~~--~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~l 157 (272)
++.++.+.++++++||++++ ++.. .+.+.+. +.+++.. +...+.. ....+++++++ .+ +.++++
T Consensus 99 ~~~~l~~~l~~~~ivvd~st-~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~-~g~l~i~vgg~---~~--~~~~~l 171 (312)
T 3qsg_A 99 VAQQAGPHLCEGALYADFTS-CSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPH-GHRVPLVVDGD---GA--RRFQAA 171 (312)
T ss_dssp HHHHHGGGCCTTCEEEECCC-CCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTT-GGGSEEEEEST---TH--HHHHHH
T ss_pred HHHhhHhhcCCCCEEEEcCC-CCHHHHHHHHHHHHhhcCCCeEEeccccCCchhh-cCCEEEEecCC---hH--HHHHHH
Confidence 89999999999999998754 4443 2222221 2344432 2222322 33455666653 23 889999
Q ss_pred hhhcCCe-EEcCc-ccchhHHHchHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 024121 158 FGSVGKI-WRADE-KLFDAITGLSGPAYIFL----AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 231 (272)
Q Consensus 158 l~~~G~~-~~~~e-~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~ 231 (272)
|+.+|.. +++++ ......++++.+.++.. +.|++. .+++.|+++ +..+.+..+. ++..+ .. ....+.
T Consensus 172 l~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~-la~~~Gld~-~~~~~l~~~~-~~~~~-~~---~~~~~~ 244 (312)
T 3qsg_A 172 FTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALA-AAEKMGLAD-RVLASLDASF-PEHHL-RD---LALYLV 244 (312)
T ss_dssp HHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTTCHH-HHHHHHHHHS-GGGTH-HH---HHHHHH
T ss_pred HHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCH-HHHHHHHhcC-CchhH-HH---hhhHhh
Confidence 9999965 67776 35555566665555533 444444 678999998 5666666554 22111 11 133455
Q ss_pred HhcCCCcchH----HHHHHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 232 DDVASPGGTT----IAGIHELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 232 ~~~~~~~g~t----~~~l~~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
+..++|++.. ...++..++.|+...+.+++.+.++++.+.
T Consensus 245 ~~~~~~g~~~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~~~~~ 288 (312)
T 3qsg_A 245 ERNLEHADRRAHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQV 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCcccchHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhc
Confidence 5555676653 345556678899999999999999988764
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.3e-24 Score=180.83 Aligned_cols=244 Identities=15% Similarity=0.105 Sum_probs=170.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~~~v~ 88 (272)
.|||+|||+|.||.+|+.+|.++|| +|++| ||++++.+.+.+.|+..+.++.++++ +|+||+|||+ .++++++
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~ 88 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPG----GVTVY-DIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV 88 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTT----CEEEE-CSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH
Confidence 5799999999999999999999999 99999 99999999999999998889999988 9999999995 5789999
Q ss_pred HHhchhcCCCCEEEEEcCCCCHH---HHHHHhC--CCCEEEEcc--CchhhhcCCc-eEEEeCCCCCHHHHHHHHHHhhh
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRVMP--NTPSAVGEAA-TVMSLGGTATEEDGELIGKLFGS 160 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~---~l~~~~~--~~~~~~~~p--~~~~~~~~g~-~~~~~~~~~~~~~~~~v~~ll~~ 160 (272)
+++.+.++++++||++++ ++.. .+.+.+. +..++.. | ..|.....|. .+++.+ +++.++.++++|+.
T Consensus 89 ~~l~~~l~~g~ivv~~st-~~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~ 163 (296)
T 3qha_A 89 GELAGHAKPGTVIAIHST-ISDTTAVELARDLKARDIHIVDA-PVSGGAAAAARGELATMVGA---DREVYERIKPAFKH 163 (296)
T ss_dssp HHHHTTCCTTCEEEECSC-CCHHHHHHHHHHHGGGTCEEEEC-CEESCHHHHHHTCEEEEEEC---CHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEeCC-CCHHHHHHHHHHHHHcCCEEEeC-CCcCCHHHHhcCCccEEecC---CHHHHHHHHHHHHH
Confidence 999998999999998754 4443 3444443 2334431 2 2233334454 444444 68899999999999
Q ss_pred cCC-eEEcCcccchhHHHchHHHHHHHHHHHHHH---HHHHcCCCHHHH------HHHHHHHHHHHHHHHHhcCCCHHHH
Q 024121 161 VGK-IWRADEKLFDAITGLSGPAYIFLAIEALAD---GGVAAGLPRELA------LGLASQTVLGAASMVTKSGKHPGQL 230 (272)
Q Consensus 161 ~G~-~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~Gl~~~~a------~~~~~~~~~g~~~~~~~~~~~~~~l 230 (272)
+|. .+++++.......+++.+.+....+..+.| .+++.|++++++ .+++..+..++ ...+ .+..+
T Consensus 164 ~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s--~~~~---~~~~~ 238 (296)
T 3qha_A 164 WAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAI--MVRD---NMKDL 238 (296)
T ss_dssp HEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGG--CCCS---SCSCC
T ss_pred HcCCeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccC--HHhh---chhhh
Confidence 995 477777666666666644444443333333 467999999999 66665443333 1111 22222
Q ss_pred HHhcCCCcchH-----HHHHH-------HHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 231 KDDVASPGGTT-----IAGIH-------ELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 231 ~~~~~~~~g~t-----~~~l~-------~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
+. +.|++.. ....+ .-++.++...+.+.+.+.|+++.+.
T Consensus 239 -~~-~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 289 (296)
T 3qha_A 239 -EP-DNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGV 289 (296)
T ss_dssp -CT-TSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTC
T ss_pred -hc-CCCCCchhhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence 23 4676554 22222 3355677777888888888777653
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=177.26 Aligned_cols=204 Identities=15% Similarity=0.215 Sum_probs=156.2
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCc-EEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCc
Q 024121 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~-V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~ 81 (272)
|++....|||+|||+|.||..++..|.+.|+ + |.+| +|++++.+++.+ .|+....+..++++++|+||+|+|+
T Consensus 4 m~~~~~~m~i~iiG~G~mG~~~a~~l~~~g~----~~v~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~ 78 (266)
T 3d1l_A 4 MKRSIEDTPIVLIGAGNLATNLAKALYRKGF----RIVQVY-SRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKD 78 (266)
T ss_dssp ---CGGGCCEEEECCSHHHHHHHHHHHHHTC----CEEEEE-CSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCH
T ss_pred hhcCCCCCeEEEEcCCHHHHHHHHHHHHCCC----eEEEEE-eCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCH
Confidence 4444456899999999999999999999998 7 8999 999999988877 4888888888888999999999999
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCchh-----hhcCCceEEEeCCCCCHHHHHHHHH
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPS-----AVGEAATVMSLGGTATEEDGELIGK 156 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~~~-----~~~~g~~~~~~~~~~~~~~~~~v~~ 156 (272)
+.+.+++.++.+.++++++|++++++.+.+.+++.++. .-..||..|. ....+..++..+ .+++..+.+++
T Consensus 79 ~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~v~~--~~~~~~~~~~~ 154 (266)
T 3d1l_A 79 SAFAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPH--YGVFYPMQTFSKQREVDFKEIPFFIEA--SSTEDAAFLKA 154 (266)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCSS--EEEEEECCCC---CCCCCTTCCEEEEE--SSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHHh--ccCcCCceecCCCchhhcCCCeEEEec--CCHHHHHHHHH
Confidence 99999999998888899999999999988777665552 1123333321 111223333322 37888999999
Q ss_pred HhhhcC-CeEEcCccc---chhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 024121 157 LFGSVG-KIWRADEKL---FDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASM 219 (272)
Q Consensus 157 ll~~~G-~~~~~~e~~---~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~ 219 (272)
+|+.+| +.++++++. ++..++++ .+.++..+.+++ +.+.|++++++.+++.+++.++.++
T Consensus 155 l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~eal---~~~~Gl~~~~~~~l~~~~~~~~~~~ 220 (266)
T 3d1l_A 155 IASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAEL---LKKYNLPFDVMLPLIDETARKVHEL 220 (266)
T ss_dssp HHHTTCSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTCCGGGGHHHHHHHHHHHHHS
T ss_pred HHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 999999 557787664 66777766 555566666654 3589999999999999998887754
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=173.96 Aligned_cols=237 Identities=14% Similarity=0.184 Sum_probs=167.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
|||+|||+|+||.+|+.+|.++|+ +|++| +| ++++.+++.+.|+. .++.++++++|+||+|||++...+.+
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~----~V~~~-~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~ 73 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGV----EVVTS-LEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA 73 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC----EEEEC-CTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH
T ss_pred CeEEEEechHHHHHHHHHHHHCCC----eEEEe-CCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH
Confidence 689999999999999999999999 99999 99 77888888777877 67788889999999999998655556
Q ss_pred HHhchhcCCCCEEEEEcCCCCH---HHHHHHhCCCCEEEE-ccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCe
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKL---KDLQEWTGHSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI 164 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~---~~l~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~ 164 (272)
.++.+.+++ ++|++ ++++. +.+.+.++...++.. +...|.....|..++++++ .+ +.+++ |+.+|..
T Consensus 74 ~~~~~~~~~--~vi~~-s~~~~~~~~~l~~~~~~~g~~~~~v~~~~~~~~~g~~~~~~g~---~~--~~~~~-l~~~g~~ 144 (264)
T 1i36_A 74 RRAGRHVRG--IYVDI-NNISPETVRMASSLIEKGGFVDAAIMGSVRRKGADIRIIASGR---DA--EEFMK-LNRYGLN 144 (264)
T ss_dssp HHHHTTCCS--EEEEC-SCCCHHHHHHHHHHCSSSEEEEEEECSCHHHHGGGCEEEEEST---TH--HHHHG-GGGGTCE
T ss_pred HHHHHhcCc--EEEEc-cCCCHHHHHHHHHHHhhCCeeeeeeeCCccccccCCeEEecCC---cH--HHhhh-HHHcCCe
Confidence 777777755 78876 55554 356666653213221 1233444455666555553 22 78888 9999975
Q ss_pred -EEcCcc-cchhHHHchHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcc
Q 024121 165 -WRADEK-LFDAITGLSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGG 239 (272)
Q Consensus 165 -~~~~e~-~~~~~~~~~~~~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g 239 (272)
++++++ ......+++.+.++..+...+.|+ +++.|++++ +.+.+.+++ +...+.. .+ .+.++.++|++
T Consensus 145 ~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~-g~~~~~~----~~-~~~~~~~~~g~ 217 (264)
T 1i36_A 145 IEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTE-GNDFRES----AI-SRLKSSCIHAR 217 (264)
T ss_dssp EEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTS-CSSTHHH----HH-HHHHHHHHTHH
T ss_pred eEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhc-CccHHHH----HH-HHhcCCCCcch
Confidence 677763 444555555566655555555555 789999986 777776654 2111111 22 35556667888
Q ss_pred hHHHHH----HHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 240 TTIAGI----HELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 240 ~t~~~l----~~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
.+...+ +..++. +...+.+++.+.++|+.++
T Consensus 218 ~~~~~~~~~~~~a~~~-v~~p~~~~v~~~~~~~~~~ 252 (264)
T 1i36_A 218 RRYEEMKEVQDMLAEV-IDPVMPTCIIRIFDKLKDV 252 (264)
T ss_dssp HHHHHHHHHHHHHHTT-SCCSHHHHHHHHHHHHCC-
T ss_pred hhHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHc
Confidence 777766 667888 9999999999999998765
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.7e-22 Score=167.21 Aligned_cols=197 Identities=15% Similarity=0.099 Sum_probs=151.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----------C--------------cee
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----------G--------------VKV 61 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----------g--------------~~~ 61 (272)
||+++||+|||+|.||++||..|.++|+ +|++| ||++++++++.+. | +..
T Consensus 1 Mm~~~kV~VIGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~ 75 (283)
T 4e12_A 1 MTGITNVTVLGTGVLGSQIAFQTAFHGF----AVTAY-DINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY 75 (283)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE
Confidence 3567899999999999999999999999 99999 9999887766542 2 456
Q ss_pred ecCchhhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCce
Q 024121 62 LSDNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAAT 138 (272)
Q Consensus 62 ~~~~~~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~ 138 (272)
+.+..+++++||+||+|+|++ ...+++.++.+.++++++++|.+++++...+.+.++ ..++++.||..|...... .
T Consensus 76 ~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~l-v 154 (283)
T 4e12_A 76 SDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNT-A 154 (283)
T ss_dssp ESCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCE-E
T ss_pred eCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCce-E
Confidence 677778889999999999987 678888899888899999999889999988887775 357899999877665443 3
Q ss_pred EEEeCCCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 024121 139 VMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQTV 213 (272)
Q Consensus 139 ~~~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~ 213 (272)
.++++...+++.++.++++++.+|+. ++++.+..+.+. ...+...+.|++. .+.+.+.++++..+++..++
T Consensus 155 evv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~---nr~~~~~~~ea~~-l~~~g~~~~~~id~~~~~~~ 226 (283)
T 4e12_A 155 EVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGYVL---NSLLVPLLDAAAE-LLVDGIADPETIDKTWRIGT 226 (283)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTTTH---HHHHHHHHHHHHH-HHHTTSCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCEEe---hHHHHHHHHHHHH-HHHhCCCCHHHHHHHHHhcc
Confidence 56677778999999999999999975 677544333321 1222233445543 45566689999888776543
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-22 Score=174.38 Aligned_cols=201 Identities=14% Similarity=0.135 Sum_probs=147.2
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccC---CEEEEeeC
Q 024121 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS---DVVVFSVK 80 (272)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~a---Divil~v~ 80 (272)
-|.|++.|||+|||+|.||.+|+.+|.++|+ +|++| ||++++.+.+.+.|+..+.++.++++++ |+||+|||
T Consensus 16 ~~~Mm~~mkIgiIGlG~mG~~~A~~L~~~G~----~V~v~-dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp 90 (358)
T 4e21_A 16 ENLYFQSMQIGMIGLGRMGADMVRRLRKGGH----ECVVY-DLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVP 90 (358)
T ss_dssp ------CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSC
T ss_pred chhhhcCCEEEEECchHHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCC
Confidence 4567778999999999999999999999999 99999 9999999999988988888999998888 99999999
Q ss_pred cccHHHHHHHhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEE-ccCchhhhcCCceEEEeCCCCCHHHHHHHH
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIG 155 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~ 155 (272)
+.++++++.++.+.++++++||++++..+. ..+.+.+. +.+++.. +.+.+.....|.++++.| +++.++.++
T Consensus 91 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~~im~GG---~~~a~~~~~ 167 (358)
T 4e21_A 91 AAVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGYCLMIGG---EKQAVERLD 167 (358)
T ss_dssp GGGHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCCEEEEES---CHHHHHHTH
T ss_pred HHHHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCCeeeecC---CHHHHHHHH
Confidence 889999999999999999999988655432 23333332 3344432 112233334555555554 689999999
Q ss_pred HHhhhcC--------------------C-eEEcCcccchhHHHchHHHHHHHHHHHHHH---HHHHc-------------
Q 024121 156 KLFGSVG--------------------K-IWRADEKLFDAITGLSGPAYIFLAIEALAD---GGVAA------------- 198 (272)
Q Consensus 156 ~ll~~~G--------------------~-~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~------------- 198 (272)
++|+.+| + .+++++.....+++++.+.+.+..+.++.| .+++.
T Consensus 168 ~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~ 247 (358)
T 4e21_A 168 PVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAET 247 (358)
T ss_dssp HHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----------
T ss_pred HHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 9999999 2 467777777777777633333333333333 34555
Q ss_pred -----------CCCHHHHHHHHHHH
Q 024121 199 -----------GLPRELALGLASQT 212 (272)
Q Consensus 199 -----------Gl~~~~a~~~~~~~ 212 (272)
|++.++..+++..+
T Consensus 248 ~~~~~~~~~~~~~d~~~i~~~~~~g 272 (358)
T 4e21_A 248 APLRNPDFYRYDLDLADITEVWRRG 272 (358)
T ss_dssp ----CGGGCCCCCCHHHHHHHHTTT
T ss_pred cccccchhcccCCCHHHHHHHHhCc
Confidence 89999988887644
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-22 Score=179.55 Aligned_cols=195 Identities=11% Similarity=0.116 Sum_probs=150.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----CceeecCchhhhcc---CCEEEEeeC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVKVLSDNNAVVEY---SDVVVFSVK 80 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g~~~~~~~~~~~~~---aDivil~v~ 80 (272)
|..++|+|||+|.||++|+.+|.++|+ +|++| ||++++.+.+.+. |+..+.++.+++++ +|+||+|||
T Consensus 13 ~~~~~IgvIGlG~MG~~lA~~La~~G~----~V~v~-~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp 87 (480)
T 2zyd_A 13 MSKQQIGVVGMAVMGRNLALNIESRGY----TVSIF-NRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVK 87 (480)
T ss_dssp --CBSEEEECCSHHHHHHHHHHHTTTC----CEEEE-CSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSC
T ss_pred cCCCeEEEEccHHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECC
Confidence 467899999999999999999999999 99999 9999999988874 78888888888876 999999999
Q ss_pred c-ccHHHHHHHhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEEccC--chhhhcCCceEEEeCCCCCHHHHHH
Q 024121 81 P-QVVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDGEL 153 (272)
Q Consensus 81 ~-~~~~~v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~~p~--~~~~~~~g~~~~~~~~~~~~~~~~~ 153 (272)
+ +.++++++++.+.++++++||+++++.+. ..+.+.++ +..++. .|. .|.....|.++++.+ +++..+.
T Consensus 88 ~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~-~pv~gg~~~a~~g~~i~~gg---~~~~~~~ 163 (480)
T 2zyd_A 88 AGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIG-TGVSGGEEGALKGPSIMPGG---QKEAYEL 163 (480)
T ss_dssp SSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-EEEESHHHHHHHCCEEEEES---CHHHHHH
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeC-CccccCHhHHhcCCeEEecC---CHHHHHH
Confidence 8 57999999999999999999999888754 34555553 234443 232 344445566555544 6889999
Q ss_pred HHHHhhhcCCe--------EEcCcccchhHHHchHHHHHHHHHHHHHHH---HHH-cCCCHHHHHHHHHH
Q 024121 154 IGKLFGSVGKI--------WRADEKLFDAITGLSGPAYIFLAIEALADG---GVA-AGLPRELALGLASQ 211 (272)
Q Consensus 154 v~~ll~~~G~~--------~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~~-~Gl~~~~a~~~~~~ 211 (272)
++++|+.+|.. .++++......++++.+.+.+.+++.+.|+ +++ .|++++++.+++..
T Consensus 164 v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~ 233 (480)
T 2zyd_A 164 VAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTE 233 (480)
T ss_dssp HHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999999953 556776666666666455555556666665 567 69999999888753
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-23 Score=176.10 Aligned_cols=248 Identities=16% Similarity=0.169 Sum_probs=169.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~~~v~~ 89 (272)
|||+|||+|+||.+++.+|.+.|+ +|++| +|++++.+.+.+.|+....++.++++++|+||+||| +.++++++.
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~----~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~ 75 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGY----PLIIY-DVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYS 75 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTC----CEEEE-CSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHh
Confidence 589999999999999999999999 99999 999999998888888888888888899999999995 567888887
Q ss_pred Hh---chhcCCCCEEEEEcCCCCHHHHHH---HhCCCCEEEEccCchhh-----hcCCceEEEeCCCCCHHHHHHHHHHh
Q 024121 90 QI---RPLLSRKKLLVSVAAGVKLKDLQE---WTGHSRFIRVMPNTPSA-----VGEAATVMSLGGTATEEDGELIGKLF 158 (272)
Q Consensus 90 ~l---~~~l~~~~~iis~~~~~~~~~l~~---~~~~~~~~~~~p~~~~~-----~~~g~~~~~~~~~~~~~~~~~v~~ll 158 (272)
++ .+.++++++||+ +++++.+..++ .++... +.+|+.|.. ...+...++.+ .+++..+.++++|
T Consensus 76 ~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~g--~~~~~~p~~~g~~~a~~~~~~~~~~--~~~~~~~~v~~l~ 150 (296)
T 2gf2_A 76 GANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKMG--AVFMDAPVSGGVGAARSGNLTFMVG--GVEDEFAAAQELL 150 (296)
T ss_dssp STTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHTT--CEEEECCEESHHHHHHHTCEEEEEE--SCGGGHHHHHHHH
T ss_pred CchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHcC--CEEEEcCCCCChhHHhcCcEEEEeC--CCHHHHHHHHHHH
Confidence 64 446778999999 78888765443 232110 112222322 22444444444 3688899999999
Q ss_pred hhcCCe-EEcCcccchhHHHchHHHHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH--
Q 024121 159 GSVGKI-WRADEKLFDAITGLSGPAYI----FLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK-- 231 (272)
Q Consensus 159 ~~~G~~-~~~~e~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~-- 231 (272)
+.+|.. ++++........++..+.+. ..+.|++. .+.+.|++++++.+++..+. +...++...+..|..+.
T Consensus 151 ~~~g~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~-~~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~s 228 (296)
T 2gf2_A 151 GCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMN-LGIRLGLDPKLLAKILNMSS-GRCWSSDTYNPVPGVMDGV 228 (296)
T ss_dssp TTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHTST-TCBHHHHHSCSSTTTCSSS
T ss_pred HHHcCCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHhCc-ccCHHHHhcCCcccccccc
Confidence 999964 66665444444444322221 34555555 67899999999988877532 22233322222233322
Q ss_pred --HhcCCCcchHHH-------HHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 024121 232 --DDVASPGGTTIA-------GIHELEKSGFRGILMNAVVAAAKRSRE 270 (272)
Q Consensus 232 --~~~~~~~g~t~~-------~l~~l~~~~~~~~~~~~~~~~~~r~~~ 270 (272)
...+.+++.... .++..++.|+...+.+++.+.++++.+
T Consensus 229 ~~~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~ 276 (296)
T 2gf2_A 229 PSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCA 276 (296)
T ss_dssp GGGGTTCSSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hhccCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 223345443332 345557789999999999998888775
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=177.87 Aligned_cols=192 Identities=15% Similarity=0.161 Sum_probs=149.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCceeecCchhhhcc---CCEEEEeeCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGVKVLSDNNAVVEY---SDVVVFSVKP 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~~~~~~~~~~~~~---aDivil~v~~ 81 (272)
..+|||||+|.||++|+.+|.++|+ +|++| ||++++++++.+ .|+..+.++.+++++ +|+||+|||+
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~G~----~V~v~-dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~ 84 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADHGF----TVCAY-NRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKA 84 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCS
T ss_pred CCCEEEEeeHHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCC
Confidence 4689999999999999999999999 99999 999999999887 578878888888776 9999999998
Q ss_pred -ccHHHHHHHhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEEcc--CchhhhcCCceEEEeCCCCCHHHHHHH
Q 024121 82 -QVVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVMP--NTPSAVGEAATVMSLGGTATEEDGELI 154 (272)
Q Consensus 82 -~~~~~v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~~p--~~~~~~~~g~~~~~~~~~~~~~~~~~v 154 (272)
+.++++++++.+.++++++||+++++.+. ..+.+.+. +.+++. +| +.|.....|.+++..+ +++.++.+
T Consensus 85 ~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~-~pVsgg~~~a~~G~~im~gg---~~e~~~~v 160 (497)
T 2p4q_A 85 GAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVG-SGVSGGEEGARYGPSLMPGG---SEEAWPHI 160 (497)
T ss_dssp SHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-EEEESHHHHHHHCCEEEEEE---CGGGHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeC-CCcccChhHhhcCCeEEecC---CHHHHHHH
Confidence 48999999999999999999998776653 33444443 344553 24 4455556666555544 68899999
Q ss_pred HHHhhhcCCe-------EEcCcccchhHHHchHHHHHHHHHHHHHHH---HHH-cCCCHHHHHHHHH
Q 024121 155 GKLFGSVGKI-------WRADEKLFDAITGLSGPAYIFLAIEALADG---GVA-AGLPRELALGLAS 210 (272)
Q Consensus 155 ~~ll~~~G~~-------~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~~-~Gl~~~~a~~~~~ 210 (272)
+++|+.+|.. .++++......++++.+.+.+..+..+.|+ +++ .|++++++.+++.
T Consensus 161 ~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~ 227 (497)
T 2p4q_A 161 KNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFA 227 (497)
T ss_dssp HHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 9999999954 566776666666666555555556666665 677 5999999988885
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-21 Score=162.70 Aligned_cols=188 Identities=19% Similarity=0.149 Sum_probs=144.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-------CceeecCchhhhccCCEEEEeeCcc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-------GVKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-------g~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
.++|+|||+|.||++||.+|+ +|+ +|++| ||++++++++.+. ++..+.++.+ +++||+||.|+|.+
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-aG~----~V~v~-d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~ 84 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-SKH----EVVLQ-DVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFED 84 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTS----EEEEE-CSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSC
T ss_pred CCeEEEEeeCHHHHHHHHHHH-cCC----EEEEE-ECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCC
Confidence 479999999999999999999 999 99999 9999999888776 7777888876 89999999999876
Q ss_pred c-HH-HHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhh
Q 024121 83 V-VK-DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFG 159 (272)
Q Consensus 83 ~-~~-~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~ 159 (272)
. ++ .++.++.+. +++++++.++++++..+++.+. ..++++.|+..|.... ....++++..++++.++.++++++
T Consensus 85 ~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~-~lveiv~g~~t~~~~~~~~~~l~~ 161 (293)
T 1zej_A 85 LNTKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVM-PLVEIVISRFTDSKTVAFVEGFLR 161 (293)
T ss_dssp HHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTC-CEEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccC-CEEEEECCCCCCHHHHHHHHHHHH
Confidence 4 44 455666654 8888888778899988877554 2468888887776543 355567787789999999999999
Q ss_pred hcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 024121 160 SVGKI-WRADEKLFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG 215 (272)
Q Consensus 160 ~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g 215 (272)
.+|+. +++++. .++...+...+.|++. .+.+ |+++++..+++..++..
T Consensus 162 ~lGk~~v~v~d~------fi~Nrll~~~~~EA~~-l~~~-Gv~~e~id~~~~~g~g~ 210 (293)
T 1zej_A 162 ELGKEVVVCKGQ------SLVNRFNAAVLSEASR-MIEE-GVRAEDVDRVWKHHLGL 210 (293)
T ss_dssp HTTCEEEEEESS------CHHHHHHHHHHHHHHH-HHHH-TCCHHHHHHHHHTTHHH
T ss_pred HcCCeEEEeccc------ccHHHHHHHHHHHHHH-HHHh-CCCHHHHHHHHHhcCCC
Confidence 99975 677653 1112233334556655 3455 88999999888755443
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-22 Score=162.02 Aligned_cols=154 Identities=14% Similarity=0.220 Sum_probs=127.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEE-EeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICT-AVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v-~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
|++|||+|||+|+||.+++..|.++|+ +|.+ | +|++++++++.+ .|+....+..+.++++|+||+|||++.+.
T Consensus 21 m~mmkI~IIG~G~mG~~la~~l~~~g~----~V~~v~-~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~~~~ 95 (220)
T 4huj_A 21 QSMTTYAIIGAGAIGSALAERFTAAQI----PAIIAN-SRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYDSIA 95 (220)
T ss_dssp GGSCCEEEEECHHHHHHHHHHHHHTTC----CEEEEC-TTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGGGHH
T ss_pred hcCCEEEEECCCHHHHHHHHHHHhCCC----EEEEEE-CCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChHHHH
Confidence 456899999999999999999999999 9998 8 999999988776 57766667777789999999999999999
Q ss_pred HHHHHhchhcCCCCEEEEEcCCC--------------CHHHHHHHhCCCCEEEEccCchhhhcC-C-------ceEEEeC
Q 024121 86 DVAMQIRPLLSRKKLLVSVAAGV--------------KLKDLQEWTGHSRFIRVMPNTPSAVGE-A-------ATVMSLG 143 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~~~--------------~~~~l~~~~~~~~~~~~~p~~~~~~~~-g-------~~~~~~~ 143 (272)
+++.++.+ + ++++||++++++ ..+.+++.+++.++++.+|+.|..... + ..+++.+
T Consensus 96 ~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~~~v~~~g~~~~~~~~~v~~~g 173 (220)
T 4huj_A 96 DIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKVVKAFNTLPAAVLAADPDKGTGSRVLFLSG 173 (220)
T ss_dssp HHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEEEEESCSSCHHHHTSCSBCSSCEEEEEEEE
T ss_pred HHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCEEECCCCCCHHHhhhCcccCCCCeeEEEeC
Confidence 99999877 5 688999999888 357788888877899999988776544 2 2344444
Q ss_pred CCCCHHHHHHHHHHhhhcCCe-EEcCcc
Q 024121 144 GTATEEDGELIGKLFGSVGKI-WRADEK 170 (272)
Q Consensus 144 ~~~~~~~~~~v~~ll~~~G~~-~~~~e~ 170 (272)
. +++..+.++++|+.+|.. +..++-
T Consensus 174 ~--~~~~~~~v~~l~~~~G~~~~~~G~l 199 (220)
T 4huj_A 174 N--HSDANRQVAELISSLGFAPVDLGTL 199 (220)
T ss_dssp S--CHHHHHHHHHHHHHTTCEEEECCSH
T ss_pred C--CHHHHHHHHHHHHHhCCCeEeeCCh
Confidence 3 688999999999999965 666653
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-21 Score=164.78 Aligned_cols=240 Identities=18% Similarity=0.196 Sum_probs=154.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCH-------HHHHHHHHcCceeec-CchhhhccCCEEEEeeC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNL-------KRRDAFESIGVKVLS-DNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~-------~~~~~l~~~g~~~~~-~~~~~~~~aDivil~v~ 80 (272)
+|||+|||+|.||.+|+.+|.++| + +|++| ||++ +..+.+.+.|+ +. ++.++++++|+||+|||
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~----~V~~~-dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp 96 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAA----RLAAY-DLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVV 96 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCS----EEEEE-CGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCC
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCC----eEEEE-eCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecC
Confidence 479999999999999999999999 9 99999 9997 45566666777 56 78899999999999999
Q ss_pred cccHHHHHHHhchhcCCCCEEEEEcCCCCHH---HHHHHhC--CCCEEEE-ccC-chhhhcCCceEEEeCCCCCHHHHHH
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRV-MPN-TPSAVGEAATVMSLGGTATEEDGEL 153 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~---~l~~~~~--~~~~~~~-~p~-~~~~~~~g~~~~~~~~~~~~~~~~~ 153 (272)
++...+++.++.+.++++++||+++ +++.. .+.+.+. +..++.. +.+ .+.. ....+++++++ .+ +.
T Consensus 97 ~~~~~~~~~~i~~~l~~~~ivv~~s-t~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~-~g~l~i~vgg~---~~--~~ 169 (317)
T 4ezb_A 97 GAATKAVAASAAPHLSDEAVFIDLN-SVGPDTKALAAGAIATGKGSFVEGAVMARVPPY-AEKVPILVAGR---RA--VE 169 (317)
T ss_dssp GGGHHHHHHHHGGGCCTTCEEEECC-SCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTT-GGGSEEEEEST---TH--HH
T ss_pred CHHHHHHHHHHHhhcCCCCEEEECC-CCCHHHHHHHHHHHHHcCCeEEeccCCCCchhh-cCCEEEEEeCC---hH--HH
Confidence 9988888889999999999999875 45543 3444443 2333321 111 2222 22345566653 23 88
Q ss_pred HHHHhhhcCCe-EEcCc-ccchhHHHchHHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHH-HHHHHHhcCCCH
Q 024121 154 IGKLFGSVGKI-WRADE-KLFDAITGLSGPAYIFLAIEALAD---GGVAAGLPRELALGLASQTVLG-AASMVTKSGKHP 227 (272)
Q Consensus 154 v~~ll~~~G~~-~~~~e-~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~Gl~~~~a~~~~~~~~~g-~~~~~~~~~~~~ 227 (272)
++++|+.+|.. +++++ ......++++.+.+....+..+.| .+++.|++++ .++.+..+..+ .... ..
T Consensus 170 ~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~-~~~~l~~~~~~~~~~~------~~ 242 (317)
T 4ezb_A 170 VAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTER-ILDSVQETFPGLDWRD------VA 242 (317)
T ss_dssp HHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCHHH------HH
T ss_pred HHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhcCccccHHH------hh
Confidence 99999999965 77776 566667777644444333333333 4679999995 44444433211 1110 01
Q ss_pred HHHHHhcCCCcchH----HHHHHHHHhCCHHHHHHHHHHHH----HHHHhh
Q 024121 228 GQLKDDVASPGGTT----IAGIHELEKSGFRGILMNAVVAA----AKRSRE 270 (272)
Q Consensus 228 ~~l~~~~~~~~g~t----~~~l~~l~~~~~~~~~~~~~~~~----~~r~~~ 270 (272)
..+.+..+.|++.. ...++..++.|+...+.+++.+. +++..+
T Consensus 243 ~~~~~~~~~~g~~~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~a~~~~~~ 293 (317)
T 4ezb_A 243 DYYLSRTFEHGARRVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKD 293 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhcCCCCCCcchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH
Confidence 12222223343321 22344445667777777666666 555443
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-20 Score=159.78 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=142.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH-----------Hc------------------Cce
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-----------SI------------------GVK 60 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~------------------g~~ 60 (272)
++||+|||+|.||++||..|.++|+ +|++| ||++++++++. +. ++.
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~----~V~~~-d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~ 89 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGH----TVVLV-DQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceE
Confidence 4789999999999999999999999 99999 99998776532 12 245
Q ss_pred eecCchhhhccCCEEEEeeCccc--HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCc
Q 024121 61 VLSDNNAVVEYSDVVVFSVKPQV--VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAA 137 (272)
Q Consensus 61 ~~~~~~~~~~~aDivil~v~~~~--~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~ 137 (272)
.+.++.+++++||+||+|||.+. ..+++.++.++++++++|++.+++++...+.+.+. ..++++.||..|.......
T Consensus 90 ~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~~~ 169 (302)
T 1f0y_A 90 TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLV 169 (302)
T ss_dssp EESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEE
T ss_pred EecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCceE
Confidence 56677778899999999998763 46788889888888999998889999988877665 3568999998887654433
Q ss_pred eEEEeCCCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 024121 138 TVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYI-FLAIEALADGGVAAGLPRELALGLASQ 211 (272)
Q Consensus 138 ~~~~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~Gl~~~~a~~~~~~ 211 (272)
.++++...+++..+.+.++++.+|+. +++.+. .. ...+.++ ..+.|++. .+.+.|+++++...++..
T Consensus 170 -~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~-~g----~i~nr~l~~~~~Ea~~-l~~~g~~~~~~id~~~~~ 238 (302)
T 1f0y_A 170 -EVIKTPMTSQKTFESLVDFSKALGKHPVSCKDT-PG----FIVNRLLVPYLMEAIR-LYERGDASKEDIDTAMKL 238 (302)
T ss_dssp -EEECCTTCCHHHHHHHHHHHHHTTCEEEEECSC-TT----TTHHHHHHHHHHHHHH-HHHTTSSCHHHHHHHHHH
T ss_pred -EEeCCCCCCHHHHHHHHHHHHHcCCceEEecCc-cc----ccHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHh
Confidence 45677778999999999999999965 665542 11 1112222 22334443 456677899887766653
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-21 Score=163.98 Aligned_cols=157 Identities=12% Similarity=0.175 Sum_probs=120.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeec------------Cchhhhc---cCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS------------DNNAVVE---YSD 73 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~------------~~~~~~~---~aD 73 (272)
++|||+|||+|+||++++..|.++|+ +|++| +|++++.+.+.+.|+.... +..++.+ ++|
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~-~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 76 (316)
T 2ew2_A 2 NAMKIAIAGAGAMGSRLGIMLHQGGN----DVTLI-DQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVD 76 (316)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCS
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCC----cEEEE-ECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCC
Confidence 45899999999999999999999999 99999 9999999888876654321 3334444 899
Q ss_pred EEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-HHHHHHhCCCCEEE---------EccCchhhhcCCceEEEeC
Q 024121 74 VVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIR---------VMPNTPSAVGEAATVMSLG 143 (272)
Q Consensus 74 ivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-~~l~~~~~~~~~~~---------~~p~~~~~~~~g~~~~~~~ 143 (272)
+||+|||++++.++++++.++++++++|+++++|++. +.+++.++..+++. ..|+.+...+.|...+...
T Consensus 77 ~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~ 156 (316)
T 2ew2_A 77 LIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENI 156 (316)
T ss_dssp EEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEES
T ss_pred EEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeec
Confidence 9999999999999999999999899999999898876 66777666334542 3455555555666666544
Q ss_pred CCCCHHHHHHHHHHhhhcCCeEEcCcc
Q 024121 144 GTATEEDGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 144 ~~~~~~~~~~v~~ll~~~G~~~~~~e~ 170 (272)
.+.+++..+.++++|+.+|..++..++
T Consensus 157 ~~~~~~~~~~~~~ll~~~g~~~~~~~d 183 (316)
T 2ew2_A 157 DPSGKKFALEVVDVFQKAGLNPSYSSN 183 (316)
T ss_dssp SGGGHHHHHHHHHHHHHTTCCEEECTT
T ss_pred CCCccHHHHHHHHHHHhCCCCcEEchh
Confidence 445678889999999999965443343
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-20 Score=164.36 Aligned_cols=247 Identities=16% Similarity=0.202 Sum_probs=159.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC-----------ceeecCchhhhccCCEEEEe
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-----------VKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g-----------~~~~~~~~~~~~~aDivil~ 78 (272)
.|||+|||+|+||++|+.+|.++|+ +|++| +|++++.+.+.+.| +..+.++.+ ++++|+||+|
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G~----~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~ 87 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENGE----EVILW-ARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIA 87 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEEC
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEE
Confidence 4899999999999999999999999 99999 99999999888765 466777778 8899999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCCCCHH---HHHHH----hCCCCEEEEccCchhhhcCCc-eEEEeCCCCCHHH
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEW----TGHSRFIRVMPNTPSAVGEAA-TVMSLGGTATEED 150 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~---~l~~~----~~~~~~~~~~p~~~~~~~~g~-~~~~~~~~~~~~~ 150 (272)
||++++++++.++.+ ++++||++++|++.+ .+.+. ++....++..|+.+...+.|. +.++.+. .+
T Consensus 88 vk~~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~g~---~~- 160 (335)
T 1z82_A 88 IPVQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTLAG---EN- 160 (335)
T ss_dssp SCGGGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHHTTCCEEEEEEE---TT-
T ss_pred CCHHHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHHHhCCCceEEEEEe---hh-
Confidence 999999999988776 788999999887653 23332 331135678899888776665 3333332 12
Q ss_pred HHHHHHHhhhcCCeEEcCcccchhH------------H----Hch-HH----HHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 024121 151 GELIGKLFGSVGKIWRADEKLFDAI------------T----GLS-GP----AYIFLAIEALADGGVAAGLPRELALGLA 209 (272)
Q Consensus 151 ~~~v~~ll~~~G~~~~~~e~~~~~~------------~----~~~-~~----~~~~~~~~~l~~~~~~~Gl~~~~a~~~~ 209 (272)
.+.++++|+..|...+..++..... + ... ++ .++...+..+...+++.|++++++.++.
T Consensus 161 ~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~l~ 240 (335)
T 1z82_A 161 SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMGLA 240 (335)
T ss_dssp HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTT
T ss_pred HHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhhcccc
Confidence 7889999999886544344322100 0 000 11 2222233333345779999998765431
Q ss_pred --HH---HHHH-------HHHHHHhcCCCHHHHHHhcCCCc--chHH-HHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 024121 210 --SQ---TVLG-------AASMVTKSGKHPGQLKDDVASPG--GTTI-AGIHELEKSGFRGILMNAVVAAAKRSRE 270 (272)
Q Consensus 210 --~~---~~~g-------~~~~~~~~~~~~~~l~~~~~~~~--g~t~-~~l~~l~~~~~~~~~~~~~~~~~~r~~~ 270 (272)
.. +..+ ....+. .+.+++.+.....+.- -.+. ..++..++.|+...+.+++.+.+++.++
T Consensus 241 ~~~~~~~t~~s~~~~n~~~~~~~~-~g~~~~~~~~~~g~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~~~~~ 315 (335)
T 1z82_A 241 GIGDLMVTCNSRYSRNRRFGELIA-RGFNPLKLLESSNQVVEGAFTVKAVMKIAKENKIDMPISEEVYRVVYEGKP 315 (335)
T ss_dssp THHHHHHHHHCTTCHHHHHHHHHH-HTCCHHHHHHTCSSCCTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHSCCC
T ss_pred cccceeeeccCccCcHHHHHHHHh-CCCCHHHHHHhcCCeeeHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhCCCC
Confidence 00 0000 111221 2344554444332211 1122 2333347788888888888888776553
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=169.97 Aligned_cols=194 Identities=12% Similarity=0.159 Sum_probs=144.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc---C--ceeecCchhhhc---cCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---G--VKVLSDNNAVVE---YSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~---g--~~~~~~~~~~~~---~aDivil~v~ 80 (272)
.+|+|||||+|.||.+|+.+|.++|+ +|++| ||++++.+.+.+. + +..+.++.++++ ++|+||+|||
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G~----~V~v~-dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp 77 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHGF----VVCAF-NRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVK 77 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSC
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecC
Confidence 56899999999999999999999999 99999 9999999988874 2 334578888776 5999999999
Q ss_pred cc-cHHHHHHHhchhcCCCCEEEEEcCCCCHH--HHHHHhC--CCCEEEE-ccCchhhhcCCceEEEeCCCCCHHHHHHH
Q 024121 81 PQ-VVKDVAMQIRPLLSRKKLLVSVAAGVKLK--DLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELI 154 (272)
Q Consensus 81 ~~-~~~~v~~~l~~~l~~~~~iis~~~~~~~~--~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~~v 154 (272)
+. .++++++++.++++++++||+++++.+.. .+.+.+. +.+++.. +.+.+.....|..++..| +++.++.+
T Consensus 78 ~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~~im~GG---~~ea~~~v 154 (484)
T 4gwg_A 78 AGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGG---NKEAWPHI 154 (484)
T ss_dssp SSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEE---CGGGHHHH
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCCeeecCC---CHHHHHHH
Confidence 85 78999999999999999999987665432 2333332 3445543 112333334566555544 68899999
Q ss_pred HHHhhhcCC-e-------EEcCcccchhHHHchHHHHHHHHHHHHHH---HHHH-cCCCHHHHHHHHH
Q 024121 155 GKLFGSVGK-I-------WRADEKLFDAITGLSGPAYIFLAIEALAD---GGVA-AGLPRELALGLAS 210 (272)
Q Consensus 155 ~~ll~~~G~-~-------~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~-~Gl~~~~a~~~~~ 210 (272)
+++|+.+|. . +++++.....+++++.+.+.+..+..+.| .+++ .|+++++..+++.
T Consensus 155 ~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~ 222 (484)
T 4gwg_A 155 KTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFE 222 (484)
T ss_dssp HHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred HHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 999999984 4 56777777777777744444444444444 3567 8999999888863
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-20 Score=169.17 Aligned_cols=195 Identities=11% Similarity=0.103 Sum_probs=147.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----CceeecCchhhhcc---CCEEEEeeC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVKVLSDNNAVVEY---SDVVVFSVK 80 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g~~~~~~~~~~~~~---aDivil~v~ 80 (272)
|.++||+|||+|.||++|+.+|.++|+ +|.+| +|++++.+.+.+. |+..+.++.+++++ +|+||+|||
T Consensus 3 m~~~~IgvIG~G~mG~~lA~~L~~~G~----~V~v~-dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp 77 (474)
T 2iz1_A 3 MAQANFGVVGMAVMGKNLALNVESRGY----TVAIY-NRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQ 77 (474)
T ss_dssp CTTBSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCC
T ss_pred CCCCcEEEEeeHHHHHHHHHHHHhCCC----EEEEE-cCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEcc
Confidence 345789999999999999999999999 99999 9999999888774 78777888888776 999999999
Q ss_pred cc-cHHHHHHHhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEEccC--chhhhcCCceEEEeCCCCCHHHHHH
Q 024121 81 PQ-VVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDGEL 153 (272)
Q Consensus 81 ~~-~~~~v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~~p~--~~~~~~~g~~~~~~~~~~~~~~~~~ 153 (272)
+. .++++++++.+.++++++||+++++.+. ..+.+.++ +..++. +|. .|.....|.+++..+ +++..+.
T Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~-~pv~gg~~~a~~g~~i~~gg---~~~~~~~ 153 (474)
T 2iz1_A 78 AGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIG-TGVSGGEKGALLGPSMMPGG---QKEAYDL 153 (474)
T ss_dssp TTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEE-EEECSHHHHHHHCCCEEEEE---CHHHHHH
T ss_pred CchHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEEC-CCCCCChhhhccCCeEEecC---CHHHHHH
Confidence 84 7899999999999999999998777643 45555554 233443 232 244345566555443 6889999
Q ss_pred HHHHhhhcCCe---------EEcCcccchhHHHchHHHHHHHHHHHHHHH---HHH-cCCCHHHHHHHHHH
Q 024121 154 IGKLFGSVGKI---------WRADEKLFDAITGLSGPAYIFLAIEALADG---GVA-AGLPRELALGLASQ 211 (272)
Q Consensus 154 v~~ll~~~G~~---------~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~~-~Gl~~~~a~~~~~~ 211 (272)
++++|+.+|.. .++++.......+++.+.+.+..+..+.|+ +++ .|++++++.+++..
T Consensus 154 v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~ 224 (474)
T 2iz1_A 154 VAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEE 224 (474)
T ss_dssp HHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999999953 455665555566665444444455556555 667 79999998888753
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.8e-21 Score=157.43 Aligned_cols=169 Identities=13% Similarity=0.144 Sum_probs=129.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH--------------HHHHHH-cCceeecCchhhhcc
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--------------RDAFES-IGVKVLSDNNAVVEY 71 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~--------------~~~l~~-~g~~~~~~~~~~~~~ 71 (272)
....+||+|||+|+||++|+.+|.++|+ +|++| +|++++ .+++.+ .+...+.++.+++++
T Consensus 16 ~~~~~kIgiIG~G~mG~alA~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 90 (245)
T 3dtt_A 16 YFQGMKIAVLGTGTVGRTMAGALADLGH----EVTIG-TRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAG 90 (245)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHH
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhc
Confidence 3456899999999999999999999999 99999 999987 555554 455556778888999
Q ss_pred CCEEEEeeCcccHHHHHHHh-chhcCCCCEEEEEcCCC----------------C-HHHHHHHhCCCCEEEEccCchhhh
Q 024121 72 SDVVVFSVKPQVVKDVAMQI-RPLLSRKKLLVSVAAGV----------------K-LKDLQEWTGHSRFIRVMPNTPSAV 133 (272)
Q Consensus 72 aDivil~v~~~~~~~v~~~l-~~~l~~~~~iis~~~~~----------------~-~~~l~~~~~~~~~~~~~p~~~~~~ 133 (272)
+|+||+|||++.+.+++.++ .+.+ ++++||++++++ . .+.+++.+++.++++.+++.+..+
T Consensus 91 aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~a~v 169 (245)
T 3dtt_A 91 AELVVNATEGASSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNASL 169 (245)
T ss_dssp CSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSCHHH
T ss_pred CCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccCHHH
Confidence 99999999999999999888 7777 899999998543 2 356777788778999888765543
Q ss_pred cC-------Cc-eEEEeCCCCCHHHHHHHHHHhhhcC-Ce-EEcCcccchhHHHchHHHH
Q 024121 134 GE-------AA-TVMSLGGTATEEDGELIGKLFGSVG-KI-WRADEKLFDAITGLSGPAY 183 (272)
Q Consensus 134 ~~-------g~-~~~~~~~~~~~~~~~~v~~ll~~~G-~~-~~~~e~~~~~~~~~~~~~~ 183 (272)
.. +. .++++++ +++..+.++++|+.+| .. ++.++-.....+++..+.+
T Consensus 170 ~~~~~~a~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~ 227 (245)
T 3dtt_A 170 MVDPGRAAGGDHSVFVSGN--DAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVW 227 (245)
T ss_dssp HHCGGGTGGGCCCEEEECS--CHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHH
T ss_pred hcCccccCCCCeeEEEECC--CHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHH
Confidence 22 22 3444553 6899999999999999 44 6777766566666554444
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-19 Score=158.04 Aligned_cols=250 Identities=14% Similarity=0.129 Sum_probs=165.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC--------------ceeecCchhhhccCCE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG--------------VKVLSDNNAVVEYSDV 74 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~aDi 74 (272)
+.|||+|||+|+||++++..|.++|+ +|++| +|++++++.+.+.+ +..+.++.++++++|+
T Consensus 28 ~~mkI~VIGaG~mG~alA~~La~~G~----~V~l~-~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDv 102 (356)
T 3k96_A 28 FKHPIAILGAGSWGTALALVLARKGQ----KVRLW-SYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTD 102 (356)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHTTTC----CEEEE-CSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCE
T ss_pred cCCeEEEECccHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCE
Confidence 35799999999999999999999999 99999 99999988887643 3456677888999999
Q ss_pred EEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCHH------HHHHHhCCCC-EEEEccCchhhhcCCce-E-EEeCCC
Q 024121 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK------DLQEWTGHSR-FIRVMPNTPSAVGEAAT-V-MSLGGT 145 (272)
Q Consensus 75 vil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~------~l~~~~~~~~-~~~~~p~~~~~~~~g~~-~-~~~~~~ 145 (272)
||+|||++.++++++++.++++++++||++++|+..+ .+++.++..+ .+...|+....+..+.. . ...+
T Consensus 103 VilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via~-- 180 (356)
T 3k96_A 103 ILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLAS-- 180 (356)
T ss_dssp EEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEEE--
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEec--
Confidence 9999999999999999999999999999999988764 5666666333 34567887776655542 2 2222
Q ss_pred CCHHHHHHHHHHhhhcCCeEEcCcccchh--------HHH----c----h--HHHHHHHHHHHHHH---HHHHcCCCHHH
Q 024121 146 ATEEDGELIGKLFGSVGKIWRADEKLFDA--------ITG----L----S--GPAYIFLAIEALAD---GGVAAGLPREL 204 (272)
Q Consensus 146 ~~~~~~~~v~~ll~~~G~~~~~~e~~~~~--------~~~----~----~--~~~~~~~~~~~l~~---~~~~~Gl~~~~ 204 (272)
.+++..+.++++|+..+..++.+++.... +.+ + . .+.....+..++.| .+.+.|.++++
T Consensus 181 ~~~~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G~~~~t 260 (356)
T 3k96_A 181 NNSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQET 260 (356)
T ss_dssp SCHHHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred CCHHHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhCCChHh
Confidence 36888999999999888554444432110 111 1 1 23333334444444 46789999998
Q ss_pred HHHH------HHHHHHHHHHH-----HHhcCCCHHHHHHhc-CC-CcchHHHHHHHH-HhCCHHHHHHHHHHHHH
Q 024121 205 ALGL------ASQTVLGAASM-----VTKSGKHPGQLKDDV-AS-PGGTTIAGIHEL-EKSGFRGILMNAVVAAA 265 (272)
Q Consensus 205 a~~~------~~~~~~g~~~~-----~~~~~~~~~~l~~~~-~~-~~g~t~~~l~~l-~~~~~~~~~~~~~~~~~ 265 (272)
+..+ +..-....+++ ..-.+.+.+...+.. .. .|-.|...+..+ ++.+++..+.+++.+-+
T Consensus 261 ~~gl~g~gDl~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~v~~il 335 (356)
T 3k96_A 261 LTGLAGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQVHRIL 335 (356)
T ss_dssp HTSTTTHHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hcccchhhHHHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 7643 21111100111 111244555444332 22 222344444444 66678777777766554
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-19 Score=165.19 Aligned_cols=191 Identities=12% Similarity=0.122 Sum_probs=144.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCceeecCchhhhc---cCCEEEEeeCcc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGVKVLSDNNAVVE---YSDVVVFSVKPQ 82 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~~~~~~~~~~~~---~aDivil~v~~~ 82 (272)
|||+|||+|.||++|+.+|.++|+ +|.+| +|++++.+.+.+ .|+..+.++.++++ ++|+||+|||+.
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~----~V~v~-dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~ 77 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGF----VVCAF-NRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAG 77 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTT
T ss_pred CeEEEEChHHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCCh
Confidence 689999999999999999999999 99999 999999999887 67877788888764 899999999986
Q ss_pred -cHHHHHHHhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEEccC--chhhhcCCceEEEeCCCCCHHHHHHHH
Q 024121 83 -VVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDGELIG 155 (272)
Q Consensus 83 -~~~~v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~~p~--~~~~~~~g~~~~~~~~~~~~~~~~~v~ 155 (272)
.++++++++.++++++++||+++++.+. ..+.+.+. +..++. +|. .+...+.|..++..+ +++..+.++
T Consensus 78 ~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~-~pv~g~~~~a~~g~~i~~gg---~~e~~~~v~ 153 (482)
T 2pgd_A 78 QAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVG-SGVSGGEDGARYGPSLMPGG---NKEAWPHIK 153 (482)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-EEEESHHHHHHHCCEEEEEE---CTTTHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeC-CCCCCChhhhccCCeEEeCC---CHHHHHHHH
Confidence 7999999999999899999998777654 34444443 334443 342 344445666555544 577889999
Q ss_pred HHhhhcCCe--------EEcCcccchhHHHchHHHHHHHHHHHHHHH---HHHc-CCCHHHHHHHHH
Q 024121 156 KLFGSVGKI--------WRADEKLFDAITGLSGPAYIFLAIEALADG---GVAA-GLPRELALGLAS 210 (272)
Q Consensus 156 ~ll~~~G~~--------~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~-Gl~~~~a~~~~~ 210 (272)
++|+.+|.. .++++.......++..+.+.+..+..+.|+ +++. |++++++.+++.
T Consensus 154 ~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~ 220 (482)
T 2pgd_A 154 AIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFE 220 (482)
T ss_dssp HHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred HHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHH
Confidence 999999953 345555555555555444444445555554 6778 999999888875
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.7e-20 Score=164.70 Aligned_cols=190 Identities=16% Similarity=0.099 Sum_probs=144.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------cC-------------ceeecC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-------------VKVLSD 64 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~g-------------~~~~~~ 64 (272)
+.+||+|||+|.||++||..|.++|+ +|++| ||++++++++.+ .| +..+.+
T Consensus 4 ~~~kVgVIGaG~MG~~IA~~la~aG~----~V~l~-D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 78 (483)
T 3mog_A 4 NVQTVAVIGSGTMGAGIAEVAASHGH----QVLLY-DISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTD 78 (483)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCC
Confidence 46799999999999999999999999 99999 999998877543 22 344556
Q ss_pred chhhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEE
Q 024121 65 NNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~ 141 (272)
. +.+++||+||+|||++ ..++++.++.+.+++++++++.++++++..+++.+. ..++++.||..|.... ....++
T Consensus 79 ~-~~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~-~Lvevv 156 (483)
T 3mog_A 79 I-HALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVM-KLVEVV 156 (483)
T ss_dssp G-GGGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTC-CEEEEE
T ss_pred H-HHhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhC-CeEEEe
Confidence 5 4688999999999877 346888899888899999888889999988877665 3579999998877654 355667
Q ss_pred eCCCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 024121 142 LGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYI-FLAIEALADGGVAAGLPRELALGLASQ 211 (272)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~Gl~~~~a~~~~~~ 211 (272)
++..++++.++.+.++++.+|+. +++++.. + ...+.++ ..+.|++. .+.+.+.++++..+++..
T Consensus 157 ~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~-G----fi~Nr~l~~~~~Ea~~-l~~~g~~~~~~id~a~~~ 222 (483)
T 3mog_A 157 SGLATAAEVVEQLCELTLSWGKQPVRCHSTP-G----FIVNRVARPYYSEAWR-ALEEQVAAPEVIDAALRD 222 (483)
T ss_dssp ECSSCCHHHHHHHHHHHHHTTCEEEEEESCT-T----TTHHHHTHHHHHHHHH-HHHTTCSCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCEEEEEeccC-c----chHHHHHHHHHHHHHH-HHHhCCCCHHHHHHHHHh
Confidence 78888999999999999999975 6665431 1 1122222 23334443 456677788887777664
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-19 Score=157.74 Aligned_cols=191 Identities=13% Similarity=0.103 Sum_probs=144.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH--------HHHHcC-------------ceeecCch
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD--------AFESIG-------------VKVLSDNN 66 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~--------~l~~~g-------------~~~~~~~~ 66 (272)
+..+||+|||+|.||++||..|+++|+ +|++| |+++++.. ++.+.| +..+.+.+
T Consensus 52 ~~i~kVaVIGaG~MG~~IA~~la~aG~----~V~l~-D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~ 126 (460)
T 3k6j_A 52 YDVNSVAIIGGGTMGKAMAICFGLAGI----ETFLV-VRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH 126 (460)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-ECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH
Confidence 456899999999999999999999999 99999 99998432 233333 34556664
Q ss_pred hhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeC
Q 024121 67 AVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLG 143 (272)
Q Consensus 67 ~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~ 143 (272)
.+++||+||+|||.+ ...+++.++.+.++++++++|.++++++..+++.+. ..++++.||..|..... ...++++
T Consensus 127 -al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r~iG~HffnPv~~m~-LvEIv~g 204 (460)
T 3k6j_A 127 -KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNPANVIR-LVEIIYG 204 (460)
T ss_dssp -GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGGEEEEECCSSTTTCC-EEEEECC
T ss_pred -HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCcceEEEEecchhhhCC-EEEEEeC
Confidence 688999999999865 346788889999999999999889999988887765 35799999988876543 4456677
Q ss_pred CCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 024121 144 GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLAS 210 (272)
Q Consensus 144 ~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~ 210 (272)
..++++.++.+.++++.+|+. +++++. -+ + ++...+...+.|++. .+.+.|+++++..+++.
T Consensus 205 ~~Ts~e~~~~~~~l~~~lGk~~v~v~d~-pG-f--i~Nril~~~~~EA~~-l~~~~Ga~~e~ID~a~~ 267 (460)
T 3k6j_A 205 SHTSSQAIATAFQACESIKKLPVLVGNC-KS-F--VFNRLLHVYFDQSQK-LMYEYGYLPHQIDKIIT 267 (460)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEESSC-CH-H--HHHHHHHHHHHHHHH-HHHTSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCEEEEEecc-cH-H--HHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHH
Confidence 778999999999999999976 666642 12 1 111222233445554 45689999999888875
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-20 Score=160.32 Aligned_cols=153 Identities=14% Similarity=0.208 Sum_probs=115.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhC-----C-CCCCCcEEEEeCCCHHHHHHHHH-cCceeec-------------Cchhhhc
Q 024121 11 FILGFIGAGKMAESIAKGVAKS-----G-VLPPDRICTAVHSNLKRRDAFES-IGVKVLS-------------DNNAVVE 70 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~-----g-~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~-------------~~~~~~~ 70 (272)
|||+|||+|+||++++.+|.++ | + +|++| +| +++.+.+.+ .|+.+.. +..+.+.
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~----~V~~~-~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLL----EVSWI-AR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVG 82 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSE----EEEEE-CC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHC
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCC----CEEEE-Ec-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccC
Confidence 6999999999999999999999 9 8 99999 99 888888888 7876543 3445678
Q ss_pred cCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-HHHHHHhCCCCEEEEccCchhh---------hcCCceEE
Q 024121 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRVMPNTPSA---------VGEAATVM 140 (272)
Q Consensus 71 ~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-~~l~~~~~~~~~~~~~p~~~~~---------~~~g~~~~ 140 (272)
++|+||+|||++++.++++++.+.++++++||++++|+.. +.+++.++..++++.+++.+.. .+.|...+
T Consensus 83 ~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~~~~ 162 (317)
T 2qyt_A 83 TVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADRELFY 162 (317)
T ss_dssp CEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCCEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCceEE
Confidence 9999999999999999999999988888999999999987 5677777644555544433222 12333332
Q ss_pred EeC--CCCCHHHHHHHHHHhhhcCCeEEcCcc
Q 024121 141 SLG--GTATEEDGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 141 ~~~--~~~~~~~~~~v~~ll~~~G~~~~~~e~ 170 (272)
+.. +..+.+.. .+.++|+..|..++..++
T Consensus 163 ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~d 193 (317)
T 2qyt_A 163 FGSGLPEQTDDEV-RLAELLTAAGIRAYNPTD 193 (317)
T ss_dssp EECCSSSCCHHHH-HHHHHHHHTTCCEECCSC
T ss_pred EcCCCCCCcCHHH-HHHHHHHHCCCCCEEchH
Confidence 322 22356667 899999999965444443
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-19 Score=162.77 Aligned_cols=191 Identities=13% Similarity=0.142 Sum_probs=141.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-C-------ceeecCchhhhc---cCCEEEEee
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-G-------VKVLSDNNAVVE---YSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-g-------~~~~~~~~~~~~---~aDivil~v 79 (272)
|||+|||+|.||++++.+|.++|+ +|.+| +|++++.+.+.+. | +..+.++.++++ ++|+||+||
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~----~V~v~-dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaV 76 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGF----KVAVF-NRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILV 76 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred CEEEEEChHHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEec
Confidence 689999999999999999999999 99999 9999999888763 6 666778888776 499999999
Q ss_pred Ccc-cHHHHHHHhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEEccC--chhhhcCCceEEEeCCCCCHHHHH
Q 024121 80 KPQ-VVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDGE 152 (272)
Q Consensus 80 ~~~-~~~~v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~~p~--~~~~~~~g~~~~~~~~~~~~~~~~ 152 (272)
|+. .++++++++.+.++++++||+++++... ..+.+.++ +..++. +|. .|.....|..++..+ +++..+
T Consensus 77 p~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~-~pv~gg~~~a~~g~~i~~gg---~~~~~~ 152 (478)
T 1pgj_A 77 QAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLG-MGISGGEEGARKGPAFFPGG---TLSVWE 152 (478)
T ss_dssp CCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEE-EEEESHHHHHHHCCEEEEEE---CHHHHH
T ss_pred CChHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEE-eeccCCHHHHhcCCeEeccC---CHHHHH
Confidence 985 7999999999999899999998877643 34555553 233433 232 233344555555443 688899
Q ss_pred HHHHHhhhcCCe--------EEcCcccchhHHHchHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHH
Q 024121 153 LIGKLFGSVGKI--------WRADEKLFDAITGLSGPAYIFLAIEALADG---GVAAGLPRELALGLAS 210 (272)
Q Consensus 153 ~v~~ll~~~G~~--------~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~ 210 (272)
.++++|+.+|.. .++++.......++..+.+.+..+..+.|+ +.+.|++++++.+++.
T Consensus 153 ~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~ 221 (478)
T 1pgj_A 153 EIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLE 221 (478)
T ss_dssp HHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999943 456666555555555333433334444443 5689999999888876
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.2e-20 Score=148.45 Aligned_cols=166 Identities=17% Similarity=0.230 Sum_probs=129.9
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-C-------ceeecCchhhhccCCEEEEeeCc
Q 024121 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-G-------VKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-g-------~~~~~~~~~~~~~aDivil~v~~ 81 (272)
|||+||| +|.||++++..|.+.|+ +|++| +|++++.+.+.+. + +. ..+..++++++|+||+|+|+
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~ 74 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGH----EIVVG-SRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPW 74 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC----EEEEE-ESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCCh
Confidence 6899999 99999999999999999 99999 9999888776652 3 33 35666778899999999999
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEcCCCC--------------HHHHHHHhCCCCEEEEccCchhhhcCC------ceEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVAAGVK--------------LKDLQEWTGHSRFIRVMPNTPSAVGEA------ATVMS 141 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~~~~~--------------~~~l~~~~~~~~~~~~~p~~~~~~~~g------~~~~~ 141 (272)
+.+++++.++.+.+ ++++++++++|++ .+.+++.+++.++++.||+.+.....+ .+.++
T Consensus 75 ~~~~~~~~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (212)
T 1jay_A 75 EHAIDTARDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESEKVVSALHTIPAARFANLDEKFDWDVPV 153 (212)
T ss_dssp HHHHHHHHHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCSCEEECCTTCCHHHHHCTTCCCCEEEEE
T ss_pred hhHHHHHHHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCCCeEEEEccchHHHHhhCcCCCCCccEEE
Confidence 99999998888777 5889999988776 577888887678999987766544332 45566
Q ss_pred eCCCCCHHHHHHHHHHhhhc-CCe-EEcCcccchhHHHchHHHHHH
Q 024121 142 LGGTATEEDGELIGKLFGSV-GKI-WRADEKLFDAITGLSGPAYIF 185 (272)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~-G~~-~~~~e~~~~~~~~~~~~~~~~ 185 (272)
+++ +++..+.++++|+.+ |.. +++++.......+.++|.|+.
T Consensus 154 ~g~--~~~~~~~v~~l~~~~~G~~~~~~~~~~~a~~~k~~~~~~~~ 197 (212)
T 1jay_A 154 CGD--DDESKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPLILN 197 (212)
T ss_dssp EES--CHHHHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHHHHH
T ss_pred ECC--cHHHHHHHHHHHHHcCCCCceeccchhHHHHhcchHHHHHH
Confidence 654 588899999999999 965 677764434444444666654
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-18 Score=152.40 Aligned_cols=154 Identities=11% Similarity=0.121 Sum_probs=117.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC--------------ceeecCchhhhccC
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG--------------VKVLSDNNAVVEYS 72 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~a 72 (272)
+|++|||+|||+|+||++|+.+|.++|+ +|++| +|++++.+.+.+.+ +..+.++.++++++
T Consensus 12 ~m~M~kI~iIG~G~mG~~la~~L~~~G~----~V~~~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 86 (366)
T 1evy_A 12 LLYLNKAVVFGSGAFGTALAMVLSKKCR----EVCVW-HMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGA 86 (366)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHTTTEE----EEEEE-CSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTC
T ss_pred hhccCeEEEECCCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCC
Confidence 3333499999999999999999999999 99999 99999988887632 45556777888899
Q ss_pred CEEEEeeCcccHHHHHHH----hchhcCC-CCEEEEEcCCCCHH---HHHHH----hCCC-CEEEEccCchhhhcCCce-
Q 024121 73 DVVVFSVKPQVVKDVAMQ----IRPLLSR-KKLLVSVAAGVKLK---DLQEW----TGHS-RFIRVMPNTPSAVGEAAT- 138 (272)
Q Consensus 73 Divil~v~~~~~~~v~~~----l~~~l~~-~~~iis~~~~~~~~---~l~~~----~~~~-~~~~~~p~~~~~~~~g~~- 138 (272)
|+||+|||++++.+++.+ +.+++++ +++||++++|+..+ .+.+. ++.. ..++..|+.+.....+..
T Consensus 87 DvVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~~~g~~~ 166 (366)
T 1evy_A 87 EIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFT 166 (366)
T ss_dssp SSEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCE
T ss_pred CEEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHHHhCCce
Confidence 999999999999999998 9888888 89999998887653 22232 2311 246677888776655542
Q ss_pred EEEeCCCCCHHHHHHHHHHhhhc--CCeEE
Q 024121 139 VMSLGGTATEEDGELIGKLFGSV--GKIWR 166 (272)
Q Consensus 139 ~~~~~~~~~~~~~~~v~~ll~~~--G~~~~ 166 (272)
.+..+ ..+++..+.++++|+.. |..++
T Consensus 167 ~~~~~-~~~~~~~~~v~~ll~~~g~g~~~~ 195 (366)
T 1evy_A 167 CVSIA-SADINVARRLQRIMSTGDRSFVCW 195 (366)
T ss_dssp EEEEE-CSSHHHHHHHHHHHSCTTSSEEEE
T ss_pred EEEEe-cCCHHHHHHHHHHhcCCCCeEEEE
Confidence 22222 23678889999999999 64433
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-18 Score=149.97 Aligned_cols=152 Identities=19% Similarity=0.228 Sum_probs=117.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC-------CCCCCcEEEEeCCCHH-----HHHHHHHc--------------Cceee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSG-------VLPPDRICTAVHSNLK-----RRDAFESI--------------GVKVL 62 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g-------~~~~~~V~v~~~r~~~-----~~~~l~~~--------------g~~~~ 62 (272)
..|||+|||+|+||++++..|.++| + +|++| +|+++ +.+.+.+. ++..+
T Consensus 7 ~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~----~V~~~-~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
T 1x0v_A 7 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDP----RVTMW-VFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAV 81 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEE----EEEEE-CCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCC----eEEEE-EcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEE
Confidence 4579999999999999999999998 8 99999 99988 77776642 23455
Q ss_pred cCchhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH---------HHHHHHhCCCCEEEEccCchhhh
Q 024121 63 SDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL---------KDLQEWTGHSRFIRVMPNTPSAV 133 (272)
Q Consensus 63 ~~~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~---------~~l~~~~~~~~~~~~~p~~~~~~ 133 (272)
.++.++++++|+||+|||+++++++++++.++++++++||++++|+.. +.+.+.++....++..|+.+..+
T Consensus 82 ~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~~v 161 (354)
T 1x0v_A 82 PDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEV 161 (354)
T ss_dssp SSHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCCEEEEECSCCHHHH
T ss_pred cCHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCCEEEEECCCcHHHH
Confidence 677788899999999999999999999999999899999999888762 22344444223467789888776
Q ss_pred cCCc-eEEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 024121 134 GEAA-TVMSLGGTATEEDGELIGKLFGSVGKIWR 166 (272)
Q Consensus 134 ~~g~-~~~~~~~~~~~~~~~~v~~ll~~~G~~~~ 166 (272)
..+. ..++.+ ..+++..+.++++|+..|..++
T Consensus 162 ~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~ 194 (354)
T 1x0v_A 162 ADEKFCETTIG-CKDPAQGQLLKELMQTPNFRIT 194 (354)
T ss_dssp HTTCCEEEEEE-CSSHHHHHHHHHHHCBTTEEEE
T ss_pred HhcCCceEEEE-ECCHHHHHHHHHHhCCCCEEEE
Confidence 6664 233322 2367888999999999985533
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-18 Score=151.74 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=116.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-------CCCCCcEEEEeCCCHH-----HHHHHHHc--------------Cceeec
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSG-------VLPPDRICTAVHSNLK-----RRDAFESI--------------GVKVLS 63 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g-------~~~~~~V~v~~~r~~~-----~~~~l~~~--------------g~~~~~ 63 (272)
+|||+|||+|+||++|+..|.++| + +|++| +|+++ +.+.+.+. ++..+.
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~----~V~~~-~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 95 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFEN----EVRMW-IRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHS 95 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCS----CEEEE-CCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCC----eEEEE-ECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEEC
Confidence 468999999999999999999999 8 99999 99988 77777652 345666
Q ss_pred CchhhhccCCEEEEeeCcccHHHHHHHhch----hcCCCCEEEEEcCCCCH-----HHH----HHHhCCCCEEEEccCch
Q 024121 64 DNNAVVEYSDVVVFSVKPQVVKDVAMQIRP----LLSRKKLLVSVAAGVKL-----KDL----QEWTGHSRFIRVMPNTP 130 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~~~~~v~~~l~~----~l~~~~~iis~~~~~~~-----~~l----~~~~~~~~~~~~~p~~~ 130 (272)
++.++++++|+||+|||++++++++.++.+ .++++++||++++|++. +.+ .+.++....++..|+.+
T Consensus 96 ~~~ea~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a 175 (375)
T 1yj8_A 96 DLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCSALSGANIA 175 (375)
T ss_dssp STHHHHTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEEEEECSCCH
T ss_pred CHHHHHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEEEEeCCchH
Confidence 777888999999999999999999999998 88899999999888764 222 33333113456778887
Q ss_pred hhhcCCceE-EEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 024121 131 SAVGEAATV-MSLGGTATEEDGELIGKLFGSVGKIWR 166 (272)
Q Consensus 131 ~~~~~g~~~-~~~~~~~~~~~~~~v~~ll~~~G~~~~ 166 (272)
..+..+... +..+ ..+++..+.++++|+..|..++
T Consensus 176 ~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~ 211 (375)
T 1yj8_A 176 MDVAMENFSEATIG-GNDKDSLVIWQRVFDLPYFKIN 211 (375)
T ss_dssp HHHHTTCCEEEEEE-CSCHHHHHHHHHHHCBTTEEEE
T ss_pred HHHHhCCCeEEEEe-cCCHHHHHHHHHHhCCCCeEEE
Confidence 766655432 2222 2367888999999999885433
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=153.52 Aligned_cols=151 Identities=13% Similarity=0.145 Sum_probs=110.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc---Cc----eeecCchhhhccCCEEEEeeCccc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---GV----KVLSDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~---g~----~~~~~~~~~~~~aDivil~v~~~~ 83 (272)
|||+|||+|+||++++..|.++|+ +|++| +|++++.+.+... |. .+..+..+.++++|+||+|||+++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~ 75 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGH----EVQGW-LRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQ 75 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGG
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC----CEEEE-EcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHh
Confidence 689999999999999999999999 99999 9998765544332 21 122233566789999999999999
Q ss_pred HHHHHHHhchhcCCCCEEEEEcCCCCH-HHHHHHhCC----C---CEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHH
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGH----S---RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIG 155 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~~~~~-~~l~~~~~~----~---~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~ 155 (272)
++++++++.++++++++|+++++|+.. +.+++.++. . ...+..| .+...+.|.+.+.+.. .+++..+.++
T Consensus 76 ~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~p-~~~~~~~g~~~i~~~~-~~~~~~~~~~ 153 (291)
T 1ks9_A 76 VSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQPLLMGTTTHAARRDGN-VIIHVANGITHIGPAR-QQDGDYSYLA 153 (291)
T ss_dssp HHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTCCSCEEEEEECCEEEEETT-EEEEEECCCEEEEESS-GGGTTCTHHH
T ss_pred HHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHhcCCeEEEEEeEccEEcCC-EEEEecccceEEccCC-CCcchHHHHH
Confidence 999999999999889999999998866 456665552 0 0123344 3444556665555422 2456778999
Q ss_pred HHhhhcCCe-EEcC
Q 024121 156 KLFGSVGKI-WRAD 168 (272)
Q Consensus 156 ~ll~~~G~~-~~~~ 168 (272)
++|+.+|.. ++.+
T Consensus 154 ~ll~~~g~~~~~~~ 167 (291)
T 1ks9_A 154 DILQTVLPDVAWHN 167 (291)
T ss_dssp HHHHTTSSCEEECT
T ss_pred HHHHhcCCCCeecH
Confidence 999999965 4443
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-18 Score=161.55 Aligned_cols=189 Identities=14% Similarity=0.036 Sum_probs=141.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH-----------HHcC-------------ceeec
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLS 63 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-----------~~~g-------------~~~~~ 63 (272)
...+||+|||+|.||++||..|.++|+ +|++| |+++++++.. .+.| +..+.
T Consensus 312 ~~i~kV~VIGaG~MG~~iA~~la~aG~----~V~l~-D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 386 (715)
T 1wdk_A 312 KDVKQAAVLGAGIMGGGIAYQSASKGT----PILMK-DINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTL 386 (715)
T ss_dssp CCCSSEEEECCHHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEES
T ss_pred ccCCEEEEECCChhhHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEEC
Confidence 457899999999999999999999999 99999 9999877653 2233 34556
Q ss_pred CchhhhccCCEEEEeeCccc--HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEE
Q 024121 64 DNNAVVEYSDVVVFSVKPQV--VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~~--~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~ 140 (272)
+. +.+++||+||+|||.+. .++++.++.++++++++++|.++++++..+.+.+. ..++++.|+..|..... ...+
T Consensus 387 d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~-lvev 464 (715)
T 1wdk_A 387 SY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMP-LVEV 464 (715)
T ss_dssp SS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCC-EEEE
T ss_pred CH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCCcccCc-eEEE
Confidence 66 67899999999998653 46788888888889999988888999988887665 25789999887776443 3445
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 024121 141 SLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLA 209 (272)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~ 209 (272)
+.+..++++.++.+.++++.+|+. +++++. .+. ++...+...+.|++. .+. .|+++++..+++
T Consensus 465 v~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf---i~Nril~~~~~Ea~~-l~~-~G~~~~~id~~~ 528 (715)
T 1wdk_A 465 IRGEKSSDLAVATTVAYAKKMGKNPIVVNDC-PGF---LVNRVLFPYFGGFAK-LVS-AGVDFVRIDKVM 528 (715)
T ss_dssp EECSSCCHHHHHHHHHHHHHTTCEEEEEESC-TTT---THHHHHHHHHHHHHH-HHH-TTCCHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHhCCEeEEEcCC-CCh---hhhHHHHHHHHHHHH-HHH-CCCCHHHHHHHH
Confidence 667778999999999999999975 666543 111 112222233444433 333 599999887777
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-18 Score=148.25 Aligned_cols=154 Identities=19% Similarity=0.247 Sum_probs=115.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee--------------ecCchhhhccCCEE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV--------------LSDNNAVVEYSDVV 75 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~--------------~~~~~~~~~~aDiv 75 (272)
.|||+|||+|+||++++..|.++|+ +|++| +|++ .+.+.+.|+.+ +.+. +.+.++|+|
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~----~V~~~-~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~v 73 (312)
T 3hn2_A 2 SLRIAIVGAGALGLYYGALLQRSGE----DVHFL-LRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDLV 73 (312)
T ss_dssp --CEEEECCSTTHHHHHHHHHHTSC----CEEEE-CSTT--HHHHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC----eEEEE-EcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCEE
Confidence 3799999999999999999999999 99999 9986 36666655432 2233 446789999
Q ss_pred EEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCC-HHHHHHHhCCCCEEEEc---------cCchhhhcCCceEEEeCCC
Q 024121 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK-LKDLQEWTGHSRFIRVM---------PNTPSAVGEAATVMSLGGT 145 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~-~~~l~~~~~~~~~~~~~---------p~~~~~~~~g~~~~~~~~~ 145 (272)
|+|||+++++++++++.+++.++++||++.+|+. .+.+++.++..++++.+ |+.....+.+.+.+...++
T Consensus 74 ilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~ 153 (312)
T 3hn2_A 74 LVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLP 153 (312)
T ss_dssp EECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSC
T ss_pred EEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCC
Confidence 9999999999999999999999999999999997 46788888755666544 3333333334444433333
Q ss_pred CCHHHHHHHHHHhhhcCCeEEcCccc
Q 024121 146 ATEEDGELIGKLFGSVGKIWRADEKL 171 (272)
Q Consensus 146 ~~~~~~~~v~~ll~~~G~~~~~~e~~ 171 (272)
.+.+..+.+.++|+..|...+.+++.
T Consensus 154 ~~~~~~~~l~~~l~~~g~~~~~~~di 179 (312)
T 3hn2_A 154 RDTGRIEELAAMFRQAGVDCRTTDDL 179 (312)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEECSCH
T ss_pred CccHHHHHHHHHHHhCCCCcEEChHH
Confidence 34667788999999988655556553
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-21 Score=156.44 Aligned_cols=152 Identities=14% Similarity=0.216 Sum_probs=120.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
.+.|||+|||+|+||++++++|.+.|+ +|++| +|+++ .+.+...|+... +..++++++|+||+|||+++++++
T Consensus 17 ~~~~~I~iIG~G~mG~~la~~L~~~G~----~V~~~-~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~~~~~~v 89 (201)
T 2yjz_A 17 EKQGVVCIFGTGDFGKSLGLKMLQCGY----SVVFG-SRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHREHYDFL 89 (201)
Confidence 345799999999999999999999998 99999 99987 555555676665 677888899999999999888888
Q ss_pred HHHhchhcCCCCEEEEEcCCCC--------HHHHHHHhCCCCEEEEccCchhhhcC-Cc-----eEEEeCCCCCHHHHHH
Q 024121 88 AMQIRPLLSRKKLLVSVAAGVK--------LKDLQEWTGHSRFIRVMPNTPSAVGE-AA-----TVMSLGGTATEEDGEL 153 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~~--------~~~l~~~~~~~~~~~~~p~~~~~~~~-g~-----~~~~~~~~~~~~~~~~ 153 (272)
+ ++.+. .++++||++++|++ .+.+++.+++.++++.+|+.|..... |. ..++.+. +++.++.
T Consensus 90 ~-~l~~~-~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~~~vvra~~n~~a~~~~~g~l~g~~~~~~~g~--~~~~~~~ 165 (201)
T 2yjz_A 90 A-ELADS-LKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGAHVVKAFNTISAWALQSGTLDASRQVFVCGN--DSKAKDR 165 (201)
Confidence 7 55543 47889999999986 36677777767899999999887654 44 1344443 5778899
Q ss_pred HHHHhhhcCCe-EEcCcc
Q 024121 154 IGKLFGSVGKI-WRADEK 170 (272)
Q Consensus 154 v~~ll~~~G~~-~~~~e~ 170 (272)
++++|+.+|.. +++++-
T Consensus 166 v~~ll~~~G~~~~~~G~l 183 (201)
T 2yjz_A 166 VMDIARTLGLTPLDQGSL 183 (201)
Confidence 99999999954 666654
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-17 Score=145.20 Aligned_cols=149 Identities=15% Similarity=0.199 Sum_probs=117.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHHcCc-----------eeec--CchhhhccCCEE
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFESIGV-----------KVLS--DNNAVVEYSDVV 75 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~l~~~g~-----------~~~~--~~~~~~~~aDiv 75 (272)
|||+|||+|+||++++..|.++|+ +|++| +| ++++.+.+.+.+. .+.. ++.++++++|+|
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~v 75 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGN----EVRIW-GTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVV 75 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCC----EEEEE-CCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC----eEEEE-EccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEE
Confidence 689999999999999999999999 99999 99 9998888877553 4444 566778899999
Q ss_pred EEeeCcccHHHHHHHhchhcCCCCEEEEEcCCC------CHHHHHHHhCC-----C-CEEEEccCchhhhcCCc-eEEEe
Q 024121 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV------KLKDLQEWTGH-----S-RFIRVMPNTPSAVGEAA-TVMSL 142 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~------~~~~l~~~~~~-----~-~~~~~~p~~~~~~~~g~-~~~~~ 142 (272)
|+|||++++.+++.++.+ ++++++||++++|+ ..+.+++.++. . ..++..|+.+...+.+. +.++.
T Consensus 76 i~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~g~~~~~~~ 154 (335)
T 1txg_A 76 LLGVSTDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVF 154 (335)
T ss_dssp EECSCGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEE
T ss_pred EEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHHHccCCcEEEE
Confidence 999999999999999999 88899999998888 33566666542 1 24566788777665554 33333
Q ss_pred CCCCCHHHHHHHHHHhhhcCCeEE
Q 024121 143 GGTATEEDGELIGKLFGSVGKIWR 166 (272)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~G~~~~ 166 (272)
+. .+++..+.++++|+..|..++
T Consensus 155 ~~-~~~~~~~~~~~ll~~~g~~~~ 177 (335)
T 1txg_A 155 SS-PSESSANKMKEIFETEYFGVE 177 (335)
T ss_dssp EC-SCHHHHHHHHHHHCBTTEEEE
T ss_pred Ee-CCHHHHHHHHHHhCCCcEEEE
Confidence 32 367888999999999885533
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=140.73 Aligned_cols=137 Identities=12% Similarity=0.179 Sum_probs=110.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
..|||+|||+|+||++|+.+|.++|+ +|++| +|. ++ +.++| |+|||++.+.+++
T Consensus 5 ~~mkI~IIG~G~~G~sLA~~L~~~G~----~V~~~-~~~------------------~~-~~~aD--ilavP~~ai~~vl 58 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTVNMAEKLDSVGH----YVTVL-HAP------------------ED-IRDFE--LVVIDAHGVEGYV 58 (232)
T ss_dssp CCCEEEEECCSCCCSCHHHHHHHTTC----EEEEC-SSG------------------GG-GGGCS--EEEECSSCHHHHH
T ss_pred CCcEEEEEeeCHHHHHHHHHHHHCCC----EEEEe-cCH------------------HH-hccCC--EEEEcHHHHHHHH
Confidence 45799999999999999999999999 99999 872 22 56789 9999999999999
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCC-eEE
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-IWR 166 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~-~~~ 166 (272)
.++.++++++++|+|++++.+.+.++...+ +..++..||... ....+..+ +++..+.++++++.+|. .++
T Consensus 59 ~~l~~~l~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~g-----~~~~i~a~---d~~a~~~l~~L~~~lG~~vv~ 130 (232)
T 3dfu_A 59 EKLSAFARRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPIGQ-----DRWVASAL---DELGETIVGLLVGELGGSIVE 130 (232)
T ss_dssp HHHHTTCCTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEET-----TEEEEEES---SHHHHHHHHHHHHHTTCEECC
T ss_pred HHHHHhcCCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCCC-----CceeeeCC---CHHHHHHHHHHHHHhCCEEEE
Confidence 999998999999999877777666555433 467788887631 23444443 67789999999999995 478
Q ss_pred cCcccchhHHHch
Q 024121 167 ADEKLFDAITGLS 179 (272)
Q Consensus 167 ~~e~~~~~~~~~~ 179 (272)
+++++++.+.+.+
T Consensus 131 ~~~~~hd~~~AAv 143 (232)
T 3dfu_A 131 IADDKRAQLAAAL 143 (232)
T ss_dssp CCGGGHHHHHHHH
T ss_pred eCHHHHhHHHHHH
Confidence 9999888886654
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-17 Score=155.44 Aligned_cols=189 Identities=14% Similarity=0.058 Sum_probs=138.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------cC-------------ceeec
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-------------VKVLS 63 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~g-------------~~~~~ 63 (272)
..++||+|||+|.||++||..|.++|+ +|++| |++++++++..+ .| +..+.
T Consensus 310 ~~~~kV~VIGaG~MG~~iA~~la~aG~----~V~l~-D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 384 (725)
T 2wtb_A 310 RKIKKVAIIGGGLMGSGIATALILSNY----PVILK-EVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSL 384 (725)
T ss_dssp CCCCCEEEECCSHHHHHHHHHHHTTTC----CEEEE-CSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEES
T ss_pred ccCcEEEEEcCCHhhHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeC
Confidence 356789999999999999999999999 99999 999987765421 12 34555
Q ss_pred CchhhhccCCEEEEeeCccc--HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEE
Q 024121 64 DNNAVVEYSDVVVFSVKPQV--VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~~--~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~ 140 (272)
+. +.+++||+||+|||.+. .++++.++.+++++++++++.++++++..+.+.+. ..++++.|+..|..... ...+
T Consensus 385 d~-~~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~-lvev 462 (725)
T 2wtb_A 385 DY-ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMP-LLEI 462 (725)
T ss_dssp SS-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCC-EEEE
T ss_pred CH-HHHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCc-eEEE
Confidence 66 56899999999998764 46777888888889998888888999888877654 25788888766654332 4456
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 024121 141 SLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLA 209 (272)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~ 209 (272)
++++.++++.++.+.++++.+|+. +++++. .+. +....+...+.|++. .+. .|+++++..+++
T Consensus 463 v~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf---i~Nril~~~~~Ea~~-l~~-~G~~~e~id~~~ 526 (725)
T 2wtb_A 463 VRTNHTSAQVIVDLLDVGKKIKKTPVVVGNC-TGF---AVNRMFFPYTQAAMF-LVE-CGADPYLIDRAI 526 (725)
T ss_dssp EECSSCCHHHHHHHHHHHHHTTCEEEEEESS-TTT---THHHHHHHHHHHHHH-HHH-TTCCHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHhCCEEEEECCC-ccH---HHHHHHHHHHHHHHH-HHH-CCCCHHHHHHHH
Confidence 677778999999999999999975 666543 111 112222233444533 334 499999888877
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-17 Score=147.85 Aligned_cols=190 Identities=18% Similarity=0.182 Sum_probs=138.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------cC-----------ceeecC
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-----------VKVLSD 64 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~g-----------~~~~~~ 64 (272)
++..+||+|||+|.||.+||..|.++|+ +|++| |+++++++.+.+ .| ..++.+
T Consensus 34 ~~~~~kV~VIGaG~MG~~iA~~la~~G~----~V~l~-D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~ 108 (463)
T 1zcj_A 34 AQPVSSVGVLGLGTMGRGIAISFARVGI----SVVAV-ESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSS 108 (463)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESC
T ss_pred cCCCCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCC
Confidence 3456899999999999999999999999 99999 999987665432 11 234455
Q ss_pred chhhhccCCEEEEeeCccc--HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEE
Q 024121 65 NNAVVEYSDVVVFSVKPQV--VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~~--~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~ 141 (272)
. +.+++||+||+|||.+. ..+++.++.++++++++|++.+++++...+++.+. ..++++.|+..|.... ....++
T Consensus 109 ~-~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~la~~~~~~~~~ig~hf~~P~~~~-~lvevv 186 (463)
T 1zcj_A 109 T-KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVM-RLLEVI 186 (463)
T ss_dssp G-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTC-CEEEEE
T ss_pred H-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHHHHHhcCCcceEEeecCCCcccc-eeEEEe
Confidence 5 56889999999998753 46788888888889999998778888888877665 2568888887665533 344566
Q ss_pred eCCCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHH
Q 024121 142 LGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYI-FLAIEALADGGVAAGLPRELALGLAS 210 (272)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~Gl~~~~a~~~~~ 210 (272)
.+...+++.++.++++++.+|+. +++++. .+. + .+.++ ..+.+++. . ...|+++++..+++.
T Consensus 187 ~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~-~gf---i-~Nrll~~~~~ea~~-l-~~~G~~~~~id~~~~ 250 (463)
T 1zcj_A 187 PSRYSSPTTIATVMSLSKKIGKIGVVVGNC-YGF---V-GNRMLAPYYNQGFF-L-LEEGSKPEDVDGVLE 250 (463)
T ss_dssp ECSSCCHHHHHHHHHHHHHTTCEEEEBCCS-TTT---T-HHHHHHHHHHHHHH-H-HHTTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCEEEEECCC-ccH---H-HHHHHHHHHHHHHH-H-HHcCCCHHHHHHHHH
Confidence 77778999999999999999975 666642 111 1 12221 12234432 2 345889888777765
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.3e-18 Score=136.98 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=114.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
++|||+|||+|.||++++..|.+.|+ +|++| +|++++.+.+.+.|+... +..++++++|+||+|+|++++++++
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~----~V~~~-~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~~~~~~v~ 100 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGF----KVVVG-SRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFREHYSSLC 100 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTC----CEEEE-ESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCGGGSGGGG
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCChHHHHHHH
Confidence 56899999999999999999999999 99999 999998888777777765 6778889999999999988877777
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHH----------HHhCCCCEEEEccCchhh-hc----CCc-eEEEeCCCCCHHHHH
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQ----------EWTGHSRFIRVMPNTPSA-VG----EAA-TVMSLGGTATEEDGE 152 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~----------~~~~~~~~~~~~p~~~~~-~~----~g~-~~~~~~~~~~~~~~~ 152 (272)
+ +.+.+ +++++++++++.+.+.++ +.+++.++++.+...... .. .+. ..++.+ .+++..+
T Consensus 101 ~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g--~~~~~~~ 176 (215)
T 2vns_A 101 S-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNVISAWTLQAGPRDGNRQVPICG--DQPEAKR 176 (215)
T ss_dssp G-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTSEEEEECTTBCHHHHHTCSCSSCCEEEEEE--SCHHHHH
T ss_pred H-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCCCeEEeccccccHhHhcccccCCceeEEEec--CCHHHHH
Confidence 5 66666 889999999988765443 555655788776221111 01 122 233333 2788999
Q ss_pred HHHHHhhhcCCe-EEcCcc
Q 024121 153 LIGKLFGSVGKI-WRADEK 170 (272)
Q Consensus 153 ~v~~ll~~~G~~-~~~~e~ 170 (272)
.++++|+.+|.. +++++.
T Consensus 177 ~v~~ll~~~G~~~~~~g~~ 195 (215)
T 2vns_A 177 AVSEMALAMGFMPVDMGSL 195 (215)
T ss_dssp HHHHHHHHTTCEEEECCSG
T ss_pred HHHHHHHHcCCceEeecch
Confidence 999999999965 777764
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-17 Score=144.36 Aligned_cols=192 Identities=13% Similarity=0.166 Sum_probs=132.0
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc------------------CceeecCc
Q 024121 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI------------------GVKVLSDN 65 (272)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~------------------g~~~~~~~ 65 (272)
+.+.+++|||+|||+|.||.++|..|.+ |+ +|++| ||++++++.+.+. ++..+.++
T Consensus 30 ~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~----~V~~~-D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~ 103 (432)
T 3pid_A 30 MGRGSEFMKITISGTGYVGLSNGVLIAQ-NH----EVVAL-DIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDK 103 (432)
T ss_dssp -----CCCEEEEECCSHHHHHHHHHHHT-TS----EEEEE-CSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCH
T ss_pred cccccCCCEEEEECcCHHHHHHHHHHHc-CC----eEEEE-ecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCH
Confidence 4556667899999999999999999988 99 99999 9999998877651 45667787
Q ss_pred hhhhccCCEEEEeeCcc-----------cHHHHHHHhchhcCCCCEEEEEcCCCCH---HHHHHHhCCCCEEEEccCchh
Q 024121 66 NAVVEYSDVVVFSVKPQ-----------VVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTGHSRFIRVMPNTPS 131 (272)
Q Consensus 66 ~~~~~~aDivil~v~~~-----------~~~~v~~~l~~~l~~~~~iis~~~~~~~---~~l~~~~~~~~~~~~~p~~~~ 131 (272)
.+++++||+||+|||.. .++++++++.+ ++++++||.. +++++ +.+.+.+... .+..-|.
T Consensus 104 ~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~-STv~pgtt~~l~~~l~~~-~v~~sPe--- 177 (432)
T 3pid_A 104 HDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIK-STIPVGFTRDIKERLGID-NVIFSPE--- 177 (432)
T ss_dssp HHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEEC-SCCCTTHHHHHHHHHTCC-CEEECCC---
T ss_pred HHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEe-CCCChHHHHHHHHHHhhc-cEeecCc---
Confidence 88899999999999864 47888888888 8999999864 45554 4555555532 2333332
Q ss_pred hhcCCc---------eEEEeCCCCCHHHHHHHHHHhhh--cCC--eEEcCcccchhHHHchHHHHHHHHH---HHHHHHH
Q 024121 132 AVGEAA---------TVMSLGGTATEEDGELIGKLFGS--VGK--IWRADEKLFDAITGLSGPAYIFLAI---EALADGG 195 (272)
Q Consensus 132 ~~~~g~---------~~~~~~~~~~~~~~~~v~~ll~~--~G~--~~~~~e~~~~~~~~~~~~~~~~~~~---~~l~~~~ 195 (272)
..+.|. .++..+ +++..+.+.++|.. ++. .++.++......+++..+.|...-+ ..+...+
T Consensus 178 ~~~~G~A~~~~l~p~rIvvG~---~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~la 254 (432)
T 3pid_A 178 FLREGRALYDNLHPSRIVIGE---RSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYA 254 (432)
T ss_dssp CCCTTSHHHHHHSCSCEEESS---CSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchhhhcccCCceEEecC---CHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 344433 56778889999986 542 3454555556666766444444333 3333357
Q ss_pred HHcCCCHHHHHHHHH
Q 024121 196 VAAGLPRELALGLAS 210 (272)
Q Consensus 196 ~~~Gl~~~~a~~~~~ 210 (272)
++.|+|.++..+.+.
T Consensus 255 e~~GiD~~~v~~~~~ 269 (432)
T 3pid_A 255 ESQGLNSKQIIEGVC 269 (432)
T ss_dssp HHTTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHc
Confidence 899999998887764
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.8e-17 Score=144.74 Aligned_cols=189 Identities=16% Similarity=0.137 Sum_probs=133.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------c-CceeecCchhhhc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------I-GVKVLSDNNAVVE 70 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~-g~~~~~~~~~~~~ 70 (272)
|||+|||+|.||.++|..|.++|+ +|++| ||++++++.+.+ . ++..+.++.++++
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~----~V~~~-D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~ 77 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGA----NVRCI-DTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVP 77 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGG
T ss_pred CEEEEECcCHHHHHHHHHHHhcCC----EEEEE-ECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHh
Confidence 799999999999999999999999 99999 999999888765 1 2456677888899
Q ss_pred cCCEEEEeeCcc----------cHHHHHHHhchhcCCCCEEEEEcCCCCH---HHHHHHhC----C----CC-EEEEccC
Q 024121 71 YSDVVVFSVKPQ----------VVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG----H----SR-FIRVMPN 128 (272)
Q Consensus 71 ~aDivil~v~~~----------~~~~v~~~l~~~l~~~~~iis~~~~~~~---~~l~~~~~----~----~~-~~~~~p~ 128 (272)
++|+||+|||.. .++++++++.++++++++||+.+ +++. +.+.+.+. . .. .+..-|.
T Consensus 78 ~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe 156 (450)
T 3gg2_A 78 EADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS-TVPVGSYRLIRKAIQEELDKREVLIDFDIASNPE 156 (450)
T ss_dssp GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCC
T ss_pred cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee-eCCCcchHHHHHHHHHhccccCcCcceeEEechh
Confidence 999999999866 78999999999999999998765 4543 23333221 0 11 1222232
Q ss_pred chhhhcCCc---------eEEEeCCCCCHHHHHHHHHHhhhcCC---eEEcCcccchhHHHchHHHHHHHHHHHH---HH
Q 024121 129 TPSAVGEAA---------TVMSLGGTATEEDGELIGKLFGSVGK---IWRADEKLFDAITGLSGPAYIFLAIEAL---AD 193 (272)
Q Consensus 129 ~~~~~~~g~---------~~~~~~~~~~~~~~~~v~~ll~~~G~---~~~~~e~~~~~~~~~~~~~~~~~~~~~l---~~ 193 (272)
....|. .++..+. +++..+.++++++.+++ .++.++......+++..+.+....+..+ ..
T Consensus 157 ---~a~eG~~~~~~~~p~~ivvG~~--~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~ 231 (450)
T 3gg2_A 157 ---FLKEGNAIDDFMKPDRVVVGVD--SDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVAN 231 (450)
T ss_dssp ---CCCTTSHHHHHHSCSCEEEEES--SHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhcccchhhhccCCCEEEEEcC--CHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 2444332 57889999999999985 3555554445556665444444333333 33
Q ss_pred HHHHcCCCHHHHHHHHH
Q 024121 194 GGVAAGLPRELALGLAS 210 (272)
Q Consensus 194 ~~~~~Gl~~~~a~~~~~ 210 (272)
.+.+.|+|.++..+++.
T Consensus 232 l~~~~Gid~~~v~~~~~ 248 (450)
T 3gg2_A 232 LCERVGADVSMVRLGIG 248 (450)
T ss_dssp HHHHHTCCHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHc
Confidence 56799999999887765
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=135.30 Aligned_cols=136 Identities=15% Similarity=0.247 Sum_probs=105.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
..|||+|||+|+||++++..|.+.|+ +|++| +|+++ .++++|+||+|+|++++++++
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~g~----~V~~~-~~~~~------------------~~~~aD~vi~av~~~~~~~v~ 74 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIAGH----EVTYY-GSKDQ------------------ATTLGEIVIMAVPYPALAALA 74 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CTTCC------------------CSSCCSEEEECSCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCHH------------------HhccCCEEEEcCCcHHHHHHH
Confidence 46899999999999999999999999 99999 99864 467899999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCCCC---------------HHHHHHHhCCCCEEEE-----ccCchhhhcCC--c-eEEEeCCC
Q 024121 89 MQIRPLLSRKKLLVSVAAGVK---------------LKDLQEWTGHSRFIRV-----MPNTPSAVGEA--A-TVMSLGGT 145 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~---------------~~~l~~~~~~~~~~~~-----~p~~~~~~~~g--~-~~~~~~~~ 145 (272)
.++.+.++ +++++++++|++ .+.+++.+++.++++. .|+.+.....+ . .+++.+.
T Consensus 75 ~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g~- 152 (209)
T 2raf_A 75 KQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGN- 152 (209)
T ss_dssp HHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCTTSEEEECSTTSCHHHHHHSEETTTEECEEEEEES-
T ss_pred HHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCCCCcEEEeeecccHhhccccccCCCCCceeEEcCC-
Confidence 99988887 899999988776 4667777776677773 34333332233 2 3334432
Q ss_pred CCHHHHHHHHHHhhhcCC-eEEcCcc
Q 024121 146 ATEEDGELIGKLFGSVGK-IWRADEK 170 (272)
Q Consensus 146 ~~~~~~~~v~~ll~~~G~-~~~~~e~ 170 (272)
+++..+.++++|+.+|. .+++++-
T Consensus 153 -~~~~~~~v~~ll~~~G~~~~~~~~i 177 (209)
T 2raf_A 153 -DDSAKQRFTRALADSPLEVKDAGKL 177 (209)
T ss_dssp -CHHHHHHHHHHTTTSSCEEEEEESG
T ss_pred -CHHHHHHHHHHHHHcCCceEeCCCH
Confidence 57889999999999994 5666653
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-17 Score=145.27 Aligned_cols=191 Identities=14% Similarity=0.143 Sum_probs=133.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------------------CceeecCchhhh
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------------GVKVLSDNNAVV 69 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~ 69 (272)
..||+|||+|.||.+||..|.++|| +|++| ||++++++.+.+. ++..++++.+++
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~G~----~V~~~-D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~ 82 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDFGH----EVVCV-DKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGV 82 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHH
T ss_pred ceEEEEEcCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHH
Confidence 3589999999999999999999999 99999 9999998887651 246677888889
Q ss_pred ccCCEEEEeeCcc-----------cHHHHHHHhchhcCCCCEEEEEcCCCCHH---HHHHHh----CCC-CEEEEccCch
Q 024121 70 EYSDVVVFSVKPQ-----------VVKDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWT----GHS-RFIRVMPNTP 130 (272)
Q Consensus 70 ~~aDivil~v~~~-----------~~~~v~~~l~~~l~~~~~iis~~~~~~~~---~l~~~~----~~~-~~~~~~p~~~ 130 (272)
++||+||+|||.. .++++++++.++++++++||+.+ ++++. .+.+.+ ++. -.+..-|.
T Consensus 83 ~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgtt~~l~~~l~e~~~~~d~~v~~~Pe-- 159 (446)
T 4a7p_A 83 KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS-TVPVGTGDEVERIIAEVAPNSGAKVVSNPE-- 159 (446)
T ss_dssp TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS-CCCTTHHHHHHHHHHHHSTTSCCEEEECCC--
T ss_pred hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CCCchHHHHHHHHHHHhCCCCCceEEeCcc--
Confidence 9999999998533 48999999999999999999864 66543 333322 111 12222332
Q ss_pred hhhcCCc---------eEEEeCCCCCHHHHHHHHHHhhhcCC----eEEcCcccchhHHHchHHHHHHHHHHHH---HHH
Q 024121 131 SAVGEAA---------TVMSLGGTATEEDGELIGKLFGSVGK----IWRADEKLFDAITGLSGPAYIFLAIEAL---ADG 194 (272)
Q Consensus 131 ~~~~~g~---------~~~~~~~~~~~~~~~~v~~ll~~~G~----~~~~~e~~~~~~~~~~~~~~~~~~~~~l---~~~ 194 (272)
...+|. .++..+. +++..+.++++|+.+++ .++.++..-..++++..+.+....+..+ ...
T Consensus 160 -~a~eG~a~~d~~~p~~ivvG~~--~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l 236 (446)
T 4a7p_A 160 -FLREGAAIEDFKRPDRVVVGTE--DEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADL 236 (446)
T ss_dssp -CCCTTSHHHHHHSCSCEEEECS--CHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccccchhhhccCCCEEEEeCC--cHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 3444432 57888999999999885 3555554455566666444444433333 335
Q ss_pred HHHcCCCHHHHHHHHHH
Q 024121 195 GVAAGLPRELALGLASQ 211 (272)
Q Consensus 195 ~~~~Gl~~~~a~~~~~~ 211 (272)
+.+.|+|.++..+++..
T Consensus 237 ~~~~GiD~~~v~~~~~~ 253 (446)
T 4a7p_A 237 CEQVGADVQEVSRGIGM 253 (446)
T ss_dssp HHHTTCCHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHhc
Confidence 67999999998877753
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-16 Score=135.49 Aligned_cols=154 Identities=14% Similarity=0.163 Sum_probs=112.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce---------------eecCchhhhccCCE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK---------------VLSDNNAVVEYSDV 74 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~---------------~~~~~~~~~~~aDi 74 (272)
.|||+|||+|.||++++..|.++|+ +|++| +|++ .+.+.+.|+. ++.+.+++.+++|+
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~----~V~~~-~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~Dl 74 (320)
T 3i83_A 2 SLNILVIGTGAIGSFYGALLAKTGH----CVSVV-SRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDC 74 (320)
T ss_dssp -CEEEEESCCHHHHHHHHHHHHTTC----EEEEE-CSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSE
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCE
Confidence 3799999999999999999999999 99999 9986 2566555432 23455565558999
Q ss_pred EEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCC-HHHHHHHhCCCCEEEEccCc------hhhh---cCCceEEEeCC
Q 024121 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK-LKDLQEWTGHSRFIRVMPNT------PSAV---GEAATVMSLGG 144 (272)
Q Consensus 75 vil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~-~~~l~~~~~~~~~~~~~p~~------~~~~---~~g~~~~~~~~ 144 (272)
||+|||++++.++++++.+++.++++||++.+|+. .+.+++.++..+++...... |..+ +.+.+.+..-+
T Consensus 75 VilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~~~ 154 (320)
T 3i83_A 75 TLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDNEVISGLAFIGVTRTAPGEIWHQAYGRLMLGNYP 154 (320)
T ss_dssp EEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTSCEEEEEEEEEEEEEETTEEEEEEEEEEEEEESS
T ss_pred EEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCCcEEEEEEEeceEEcCCCEEEECCCCEEEEecCC
Confidence 99999999999999999999999999999999997 47888888754555432211 2222 22223332222
Q ss_pred CCCHHHHHHHHHHhhhcCCeEEcCcc
Q 024121 145 TATEEDGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 145 ~~~~~~~~~v~~ll~~~G~~~~~~e~ 170 (272)
..+.+..+.+.++|+..|...+..++
T Consensus 155 ~~~~~~~~~l~~~l~~~~~~~~~~~d 180 (320)
T 3i83_A 155 GGVSERVKTLAAAFEEAGIDGIATEN 180 (320)
T ss_dssp SCCCHHHHHHHHHHHHTTSCEEECSC
T ss_pred CCccHHHHHHHHHHHhCCCCceECHH
Confidence 23456778899999998855444444
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-17 Score=140.92 Aligned_cols=155 Identities=19% Similarity=0.257 Sum_probs=113.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-------------ecCchhhhccCCEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-------------LSDNNAVVEYSDVV 75 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-------------~~~~~~~~~~aDiv 75 (272)
+.|||+|||+|.||++++..|.++|+ +|++| +|+ ++.+.+.+.|+.+ ..+.++ +.++|+|
T Consensus 2 ~~mkI~IiGaG~~G~~~a~~L~~~g~----~V~~~-~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~V 74 (335)
T 3ghy_A 2 SLTRICIVGAGAVGGYLGARLALAGE----AINVL-ARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVV 74 (335)
T ss_dssp CCCCEEEESCCHHHHHHHHHHHHTTC----CEEEE-CCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-ECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEE
Confidence 46899999999999999999999999 99999 996 6777777766543 234444 6899999
Q ss_pred EEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCC--------------------HHHHHHHhCCCCEEEEc---------
Q 024121 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK--------------------LKDLQEWTGHSRFIRVM--------- 126 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~--------------------~~~l~~~~~~~~~~~~~--------- 126 (272)
|+|||+++++++++++.++++++++|+++.+|++ .+.+.+.++..+++...
T Consensus 75 ilavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~gv~~~~a~~~~ 154 (335)
T 3ghy_A 75 IVAVKAPALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCVVHLTCATVS 154 (335)
T ss_dssp EECCCHHHHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEEEECCCEEESS
T ss_pred EEeCCchhHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEEEEEEEEEEcC
Confidence 9999999999999999999999999999999963 23577777744554322
Q ss_pred cCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEcCcc
Q 024121 127 PNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 127 p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~ 170 (272)
|+.....+.+.+.+......+.+..+.+.++|+..|...+..++
T Consensus 155 pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~d 198 (335)
T 3ghy_A 155 PGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEA 198 (335)
T ss_dssp TTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSC
T ss_pred CcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCch
Confidence 22222223343333322223456778899999998865555544
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.7e-16 Score=132.31 Aligned_cols=149 Identities=20% Similarity=0.353 Sum_probs=111.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-------------eecCchhhhccCCEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-------------VLSDNNAVVEYSDVV 75 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~-------------~~~~~~~~~~~aDiv 75 (272)
..|||+|||+|.||++++..|.++|+ +|++| +++++.+.+.+.|.. .+.+.+ .+.++|+|
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~----~V~l~--~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~D~v 90 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGH----EVILI--ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPS-AVQGADLV 90 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTC----EEEEE--CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGG-GGTTCSEE
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCC----eEEEE--EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHH-HcCCCCEE
Confidence 35899999999999999999999999 99999 457778888775533 234443 46899999
Q ss_pred EEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-HHHHHHhCCCCEEE---------EccCchhhhcCCceEEEeCCC
Q 024121 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIR---------VMPNTPSAVGEAATVMSLGGT 145 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-~~l~~~~~~~~~~~---------~~p~~~~~~~~g~~~~~~~~~ 145 (272)
|+|||+++++++++++.++++++++|+++++|+.. +.+.+.++ .+++. ..|+.....+.|.+.+ +.
T Consensus 91 ilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~-~~vl~g~~~~~a~~~gP~~~~~~~~g~~~i--g~- 166 (318)
T 3hwr_A 91 LFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENADTLRSLLE-QEVAAAVVYVATEMAGPGHVRHHGRGELVI--EP- 166 (318)
T ss_dssp EECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC-SEEEEEEEEEEEEEEETTEEEEEEEEEEEE--CC-
T ss_pred EEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC-CcEEEEEEEEeEEEcCCeEEEEcCCceEEE--cC-
Confidence 99999999999999999999999999999999997 67788776 34432 2244444444454333 32
Q ss_pred CCHHHHHHHHHHhhhcCCeEEcCcc
Q 024121 146 ATEEDGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 146 ~~~~~~~~v~~ll~~~G~~~~~~e~ 170 (272)
.+..+.+.++|+..|..++.+++
T Consensus 167 --~~~~~~l~~~l~~~~~~~~~~~D 189 (318)
T 3hwr_A 167 --TSHGANLAAIFAAAGVPVETSDN 189 (318)
T ss_dssp --CTTTHHHHHHHHHTTCCEEECSC
T ss_pred --CHHHHHHHHHHHhCCCCcEechH
Confidence 34457889999988865555554
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-16 Score=143.11 Aligned_cols=198 Identities=15% Similarity=0.185 Sum_probs=130.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHH-------------------cCceeecCc
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFES-------------------IGVKVLSDN 65 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g~~~~~~~ 65 (272)
|.++|||+|||+|.||.+++..|.++ |+ +|++| ||++++++.+.+ .++..+.++
T Consensus 2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~----~V~~~-d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~ 76 (467)
T 2q3e_A 2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEI----RVTVV-DVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNI 76 (467)
T ss_dssp CCCCCEEEEECCSTTHHHHHHHHHHHCTTS----EEEEE-CSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhcCCCC----EEEEE-ECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCH
Confidence 33468999999999999999999998 78 99999 999998887532 245666777
Q ss_pred hhhhccCCEEEEeeCccc---------------HHHHHHHhchhcCCCCEEEEEcCCCCH---HHHHHHhC--CCC--EE
Q 024121 66 NAVVEYSDVVVFSVKPQV---------------VKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG--HSR--FI 123 (272)
Q Consensus 66 ~~~~~~aDivil~v~~~~---------------~~~v~~~l~~~l~~~~~iis~~~~~~~---~~l~~~~~--~~~--~~ 123 (272)
.++++++|+||+|||... +.++++++.++++++++||+.+ +++. +.+.+.+. ... -.
T Consensus 77 ~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S-Tv~~g~~~~l~~~l~~~~~~~~d~ 155 (467)
T 2q3e_A 77 DDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKS-TVPVRAAESIRRIFDANTKPNLNL 155 (467)
T ss_dssp HHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECS-CCCTTHHHHHHHHHHHTCCTTCEE
T ss_pred HHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECC-cCCchHHHHHHHHHHHhCCCCCCe
Confidence 788899999999996432 5677788888888898888754 3332 34444443 111 11
Q ss_pred EEccCchhhhcCCce---------EEEeCCC--CCHHHHHHHHHHhhhc-CC-eEEcCcccchhHHHchHHHHHHH---H
Q 024121 124 RVMPNTPSAVGEAAT---------VMSLGGT--ATEEDGELIGKLFGSV-GK-IWRADEKLFDAITGLSGPAYIFL---A 187 (272)
Q Consensus 124 ~~~p~~~~~~~~g~~---------~~~~~~~--~~~~~~~~v~~ll~~~-G~-~~~~~e~~~~~~~~~~~~~~~~~---~ 187 (272)
.+. ..|.....|.. ++..+.. .+++..+.++++++.+ |. .++.++.......++..+.+... +
T Consensus 156 ~V~-~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia~ 234 (467)
T 2q3e_A 156 QVL-SNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISS 234 (467)
T ss_dssp EEE-ECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEE-eCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11222233332 3344321 2577889999999998 64 46655544445556553443322 2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Q 024121 188 IEALADGGVAAGLPRELALGLASQ 211 (272)
Q Consensus 188 ~~~l~~~~~~~Gl~~~~a~~~~~~ 211 (272)
+..+...+++.|++.++..+++..
T Consensus 235 ~nE~~~l~~~~Gid~~~v~~~~~~ 258 (467)
T 2q3e_A 235 INSISALCEATGADVEEVATAIGM 258 (467)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCHHHHHHHHcC
Confidence 233334577999999988776653
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-16 Score=140.59 Aligned_cols=189 Identities=12% Similarity=0.130 Sum_probs=128.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cC-ceeecCchhhhc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE 70 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~ 70 (272)
|||+|||+|.||.+++..|.++|+ +|++| +|++++++.+.+ .| +..+.+..++++
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~----~V~~~-d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~ 75 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGH----EVIGV-DVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL 75 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhc
Confidence 689999999999999999999999 99999 999999888765 23 556667777889
Q ss_pred cCCEEEEeeCccc----------HHHHHHHhchhcCC---CCEEEEEcCCCC----HHHHHHHhC---CC----C-EEEE
Q 024121 71 YSDVVVFSVKPQV----------VKDVAMQIRPLLSR---KKLLVSVAAGVK----LKDLQEWTG---HS----R-FIRV 125 (272)
Q Consensus 71 ~aDivil~v~~~~----------~~~v~~~l~~~l~~---~~~iis~~~~~~----~~~l~~~~~---~~----~-~~~~ 125 (272)
++|+||+|||... ++++++++.+++++ +++||+.+ +++ .+.+.+.+. +. . .+..
T Consensus 76 ~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~S-tv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~ 154 (436)
T 1mv8_A 76 DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRS-TVLPGTVNNVVIPLIEDCSGKKAGVDFGVGT 154 (436)
T ss_dssp TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECS-CCCTTHHHHTHHHHHHHHHSCCBTTTBEEEE
T ss_pred cCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeC-CcCCCchHHHHHHHHHHhcCcccCCcEEEEE
Confidence 9999999997544 89999999988888 88888653 333 233443332 11 1 2222
Q ss_pred ccCchhhhcCCc---------eEEEeCCCCCHHHHHHHHHHhhhcCCeEEcCcccchhHHHchHHHHH---HHHHHHHHH
Q 024121 126 MPNTPSAVGEAA---------TVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGPAYI---FLAIEALAD 193 (272)
Q Consensus 126 ~p~~~~~~~~g~---------~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~~~~~~~~~---~~~~~~l~~ 193 (272)
.|. ....|. .++..+ .+++..+.++++++.+|..++.++-......++..+.+. ..+++.+..
T Consensus 155 ~Pe---~~~~G~~~~~~~~~~~iv~G~--~~~~~~~~~~~l~~~~~~~v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~ 229 (436)
T 1mv8_A 155 NPE---FLRESTAIKDYDFPPMTVIGE--LDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGN 229 (436)
T ss_dssp CCC---CCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTSSSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ccc---cccccccchhccCCCEEEEEc--CCHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 122222 233332 257888999999999996543343333344455434433 234444455
Q ss_pred HHHHcCCCHHHHHHHHH
Q 024121 194 GGVAAGLPRELALGLAS 210 (272)
Q Consensus 194 ~~~~~Gl~~~~a~~~~~ 210 (272)
.+.+.|++.++..+++.
T Consensus 230 l~~~~Gid~~~v~~~~~ 246 (436)
T 1mv8_A 230 IAKAVGVDGREVMDVIC 246 (436)
T ss_dssp HHHHTTSCHHHHHHHHT
T ss_pred HHHHhCCCHHHHHHHhc
Confidence 67899999987766654
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-16 Score=140.61 Aligned_cols=190 Identities=19% Similarity=0.185 Sum_probs=129.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-------C-------------ceeecCchhhh
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-------G-------------VKVLSDNNAVV 69 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-------g-------------~~~~~~~~~~~ 69 (272)
.|||+|||+|.||.++|..|.++|+ +|++| ||++++++.+.+. | +..+++..+++
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~----~V~~~-d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~ 82 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGH----DVFCL-DVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAV 82 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHH
T ss_pred CceEEEECcCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHh
Confidence 5899999999999999999999999 99999 9999999888762 2 34556666788
Q ss_pred ccCCEEEEeeCc----------ccHHHHHHHhchhcCCCCEEEEEcCCCCH---HHHHHHhC-----C---CCE-EEEcc
Q 024121 70 EYSDVVVFSVKP----------QVVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG-----H---SRF-IRVMP 127 (272)
Q Consensus 70 ~~aDivil~v~~----------~~~~~v~~~l~~~l~~~~~iis~~~~~~~---~~l~~~~~-----~---~~~-~~~~p 127 (272)
++||+||+|||. ..++++++++.++++++++||+.+ ++++ +.+.+.+. + ..+ +...|
T Consensus 83 ~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S-Tv~~gt~~~l~~~l~~~~~~g~~~~~~~v~~~P 161 (478)
T 2y0c_A 83 AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS-TVPVGTAERVRAAVAEELAKRGGDQMFSVVSNP 161 (478)
T ss_dssp HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECC
T ss_pred hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CcCCCchHHHHHHHHHHhcCCCCCccEEEEECh
Confidence 999999999986 688999999999999998888764 6543 23332221 1 111 22223
Q ss_pred CchhhhcCCc---------eEEEeCCCCCH----HHHHHHHHHhhhcCC---eEEcCcccchhHHHchHHHHHH---HHH
Q 024121 128 NTPSAVGEAA---------TVMSLGGTATE----EDGELIGKLFGSVGK---IWRADEKLFDAITGLSGPAYIF---LAI 188 (272)
Q Consensus 128 ~~~~~~~~g~---------~~~~~~~~~~~----~~~~~v~~ll~~~G~---~~~~~e~~~~~~~~~~~~~~~~---~~~ 188 (272)
. ....|. .++..+. ++ +..+.++++|+.+++ .++.++-......++..+.+.. .++
T Consensus 162 e---~~~eG~~~~~~~~p~~iviG~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~ 236 (478)
T 2y0c_A 162 E---FLKEGAAVDDFTRPDRIVIGCD--DDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFM 236 (478)
T ss_dssp C---CCCTTCHHHHHHSCSCEEEECC--SSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---hhcccceeeccCCCCEEEEEEC--CCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 122222 2343332 34 678899999998774 4555444344455555344432 233
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q 024121 189 EALADGGVAAGLPRELALGLAS 210 (272)
Q Consensus 189 ~~l~~~~~~~Gl~~~~a~~~~~ 210 (272)
..+...+++.|++.++..+.+.
T Consensus 237 nE~~~la~~~Gid~~~v~~~i~ 258 (478)
T 2y0c_A 237 NELANLADRFGADIEAVRRGIG 258 (478)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHh
Confidence 4444467899999987765543
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.6e-15 Score=125.77 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=122.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH-----------HcC--------------ceeec
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-----------SIG--------------VKVLS 63 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~g--------------~~~~~ 63 (272)
...||+|||+|.||+.||..++.+|+ +|++| |++++.+++.. +.| +..+.
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G~----~V~l~-D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~ 79 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGGF----RVKLY-DIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCT 79 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEEC
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccccc
Confidence 35689999999999999999999999 99999 99987644321 111 23456
Q ss_pred CchhhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEE
Q 024121 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~ 140 (272)
+..+++++||+|+-|+|-+ .-++++.+|.++.+++.++.|.+|++++..+.+.+. ..+++..||..|...-. +.=+
T Consensus 80 ~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~-LVEi 158 (319)
T 3ado_A 80 NLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIP-LVEL 158 (319)
T ss_dssp CHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCC-EEEE
T ss_pred chHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccc-hHHh
Confidence 6778899999999999854 346888999999999999999999999999988765 36899999887776543 3335
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCCe-EEc
Q 024121 141 SLGGTATEEDGELIGKLFGSVGKI-WRA 167 (272)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~G~~-~~~ 167 (272)
.++..++++..+.+..+.+.+|+. +.+
T Consensus 159 v~g~~Ts~~~~~~~~~~~~~~gk~pv~v 186 (319)
T 3ado_A 159 VPHPETSPATVDRTHALMRKIGQSPVRV 186 (319)
T ss_dssp EECTTCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred cCCCCCcHHHHHHHHHHHHHhCCccCCc
Confidence 678889999999999999999965 544
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.1e-16 Score=139.10 Aligned_cols=197 Identities=13% Similarity=0.126 Sum_probs=129.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHHc-------------------CceeecCch
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESI-------------------GVKVLSDNN 66 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~~-------------------g~~~~~~~~ 66 (272)
+++|||+|||+|.||.++|..|.++ |+ +|++| ||++++++.+.+. ++..++++.
T Consensus 7 ~~~mkI~VIG~G~vG~~~A~~La~~g~g~----~V~~~-D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~ 81 (481)
T 2o3j_A 7 GKVSKVVCVGAGYVGGPTCAMIAHKCPHI----TVTVV-DMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIP 81 (481)
T ss_dssp CCCCEEEEECCSTTHHHHHHHHHHHCTTS----EEEEE-CSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCC----EEEEE-ECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHH
Confidence 3468999999999999999999998 68 99999 9999998887641 244555666
Q ss_pred hhhccCCEEEEeeCcc---------------cHHHHHHHhchhcCCCCEEEEEcCCCCH---HHHHHHhCC-------CC
Q 024121 67 AVVEYSDVVVFSVKPQ---------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTGH-------SR 121 (272)
Q Consensus 67 ~~~~~aDivil~v~~~---------------~~~~v~~~l~~~l~~~~~iis~~~~~~~---~~l~~~~~~-------~~ 121 (272)
++++++|+||+|||.. .+.++++++.++++++++||+.+ +++. +.+.+.+.. ..
T Consensus 82 ~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S-Tv~~gt~~~l~~~l~~~~~~~~~~d 160 (481)
T 2o3j_A 82 KAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKS-TVPVKAAESIGCILREAQKNNENLK 160 (481)
T ss_dssp HHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHTC----CC
T ss_pred HHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECC-CCCCCHHHHHHHHHHHhhCcCcCCc
Confidence 7788999999998642 27888889999999999888653 4442 334433321 11
Q ss_pred -EEEEccCc--hhhh----cCCceEEEeCCCC--CHHHHHHHHHHhhhcCC--eEEcCcccchhHHHchHHHHHH---HH
Q 024121 122 -FIRVMPNT--PSAV----GEAATVMSLGGTA--TEEDGELIGKLFGSVGK--IWRADEKLFDAITGLSGPAYIF---LA 187 (272)
Q Consensus 122 -~~~~~p~~--~~~~----~~g~~~~~~~~~~--~~~~~~~v~~ll~~~G~--~~~~~e~~~~~~~~~~~~~~~~---~~ 187 (272)
.+...|.. |... .....++..+... +++..+.++++++.++. .++.++.......++..+.+.. .+
T Consensus 161 ~~v~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~~ia~ 240 (481)
T 2o3j_A 161 FQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISS 240 (481)
T ss_dssp EEEEECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHH
Confidence 13334431 1110 1111344333211 12577899999999984 3555544445556665333322 23
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Q 024121 188 IEALADGGVAAGLPRELALGLAS 210 (272)
Q Consensus 188 ~~~l~~~~~~~Gl~~~~a~~~~~ 210 (272)
+..+...+++.|++.++..+.+.
T Consensus 241 ~nE~~~la~~~Gid~~~v~~~~~ 263 (481)
T 2o3j_A 241 INSISAVCEATGAEISEVAHAVG 263 (481)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHc
Confidence 33344467799999998877765
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-15 Score=132.41 Aligned_cols=192 Identities=13% Similarity=0.102 Sum_probs=125.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc------------------eeecCchhhhccC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV------------------KVLSDNNAVVEYS 72 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~------------------~~~~~~~~~~~~a 72 (272)
|||+|||+|.||.+++..|.+ |+ +|++| +|++++.+.+.+.+. ..+.++.++++++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~----~V~~~-d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~a 74 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QN----EVTIV-DILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEA 74 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TS----EEEEE-CSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHC
T ss_pred CEEEEECCCHHHHHHHHHHhC-CC----EEEEE-ECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCC
Confidence 689999999999999999999 99 99999 999999988876443 4455666778899
Q ss_pred CEEEEeeCcc-----------cHHHHHHHhchhcCCCCEEEEE-cCCCC-HHHHHHHhCCCCEEEEccCc--hhhh----
Q 024121 73 DVVVFSVKPQ-----------VVKDVAMQIRPLLSRKKLLVSV-AAGVK-LKDLQEWTGHSRFIRVMPNT--PSAV---- 133 (272)
Q Consensus 73 Divil~v~~~-----------~~~~v~~~l~~~l~~~~~iis~-~~~~~-~~~l~~~~~~~~~~~~~p~~--~~~~---- 133 (272)
|+||+|||+. .+.++++++.+ ++++++||+. +.+.. .+.+.+.++...++ ..|.. |...
T Consensus 75 Dvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~~v~-~~Pe~~~~G~a~~~~ 152 (402)
T 1dlj_A 75 ELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTDRII-FSPEFLRESKALYDN 152 (402)
T ss_dssp SEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCSCEE-ECCCCCCTTSTTHHH
T ss_pred CEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCCeEE-ECCccccCcchhhcc
Confidence 9999999876 58999999988 8899998863 33333 35666666533333 23321 1110
Q ss_pred cCCceEEEeCCCC----CHHHHHHHHHHhhh-cCC---eEEcCcccchhHHHchHHHHHH---HHHHHHHHHHHHcCCCH
Q 024121 134 GEAATVMSLGGTA----TEEDGELIGKLFGS-VGK---IWRADEKLFDAITGLSGPAYIF---LAIEALADGGVAAGLPR 202 (272)
Q Consensus 134 ~~g~~~~~~~~~~----~~~~~~~v~~ll~~-~G~---~~~~~e~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~Gl~~ 202 (272)
.....++..+... ..+..+.+.++|.. ... .++.++-......++..+.+.. .++..+...+.+.|+|.
T Consensus 153 ~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~ 232 (402)
T 1dlj_A 153 LYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNS 232 (402)
T ss_dssp HSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred cCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 1111134333311 11556778888865 333 3444444444555655333332 23333444678999999
Q ss_pred HHHHHHHH
Q 024121 203 ELALGLAS 210 (272)
Q Consensus 203 ~~a~~~~~ 210 (272)
++..+.+.
T Consensus 233 ~~v~~~~~ 240 (402)
T 1dlj_A 233 HMIIQGIS 240 (402)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 98887765
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-15 Score=128.15 Aligned_cols=109 Identities=17% Similarity=0.295 Sum_probs=88.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecC----------chhhhccCCEEEEee
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD----------NNAVVEYSDVVVFSV 79 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~----------~~~~~~~aDivil~v 79 (272)
.|||+|||+|+||++++..|. +|+ +|++| +|++++.+.+.+.|+.+..+ ..+...++|+||+||
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g~----~V~~~-~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilav 75 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LYH----DVTVV-TRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTV 75 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTS----EEEEE-CSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCC----ceEEE-ECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEe
Confidence 489999999999999999999 998 99999 99998888888877654321 134567899999999
Q ss_pred CcccHHHHHHHhchhcCCCCEEEEEcCCCCHH-HHHHHhCCCCEEEEc
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK-DLQEWTGHSRFIRVM 126 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~-~l~~~~~~~~~~~~~ 126 (272)
|+++++++++.+.+. .+++ ||++.+|+..+ .+++.++..+++...
T Consensus 76 K~~~~~~~l~~l~~~-~~~~-ivs~~nGi~~~e~l~~~~~~~~vl~g~ 121 (307)
T 3ego_A 76 KQHQLQSVFSSLERI-GKTN-ILFLQNGMGHIHDLKDWHVGHSIYVGI 121 (307)
T ss_dssp CGGGHHHHHHHTTSS-CCCE-EEECCSSSHHHHHHHTCCCSCEEEEEE
T ss_pred CHHHHHHHHHHhhcC-CCCe-EEEecCCccHHHHHHHhCCCCcEEEEE
Confidence 999999999999875 5665 99999999874 777777755555443
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-15 Score=135.68 Aligned_cols=194 Identities=15% Similarity=0.102 Sum_probs=130.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHH----HHHHHHH---------------------cC-ce
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLK----RRDAFES---------------------IG-VK 60 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~----~~~~l~~---------------------~g-~~ 60 (272)
+.+|||+|||+|.||.++|..|.++ ||. +|++| ||+++ +++.+.+ .| +.
T Consensus 16 ~~~mkIaVIGlG~mG~~lA~~la~~~G~~---~V~~~-D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~ 91 (478)
T 3g79_A 16 GPIKKIGVLGMGYVGIPAAVLFADAPCFE---KVLGF-QRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFE 91 (478)
T ss_dssp CSCCEEEEECCSTTHHHHHHHHHHSTTCC---EEEEE-CCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHhCCCC---eEEEE-ECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeE
Confidence 4578999999999999999999999 862 79999 99999 8877754 12 33
Q ss_pred eecCchhhhccCCEEEEeeCcc------------cHHHHHHHhchhcCCCCEEEEEcCCCCH---HHHH-----HHhCC-
Q 024121 61 VLSDNNAVVEYSDVVVFSVKPQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQ-----EWTGH- 119 (272)
Q Consensus 61 ~~~~~~~~~~~aDivil~v~~~------------~~~~v~~~l~~~l~~~~~iis~~~~~~~---~~l~-----~~~~~- 119 (272)
.+++ .+++++||+||+|||.. .+..+.+++.++++++++||.. +++++ +.+. +..+.
T Consensus 92 ~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~-STv~pgtt~~v~~~ile~~~g~~ 169 (478)
T 3g79_A 92 CTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLE-STITPGTTEGMAKQILEEESGLK 169 (478)
T ss_dssp EESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEEC-SCCCTTTTTTHHHHHHHHHHCCC
T ss_pred EeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEe-CCCChHHHHHHHHHHHHHhcCCC
Confidence 4445 67889999999999743 2566778888999999998865 45543 2232 22221
Q ss_pred --CC-EEEEccCc--hhhh----cCCceEEEeCCCCCHHHHHHHHHHhhhc-CC-eEEcCcccchhHHHchHHHHHHHHH
Q 024121 120 --SR-FIRVMPNT--PSAV----GEAATVMSLGGTATEEDGELIGKLFGSV-GK-IWRADEKLFDAITGLSGPAYIFLAI 188 (272)
Q Consensus 120 --~~-~~~~~p~~--~~~~----~~g~~~~~~~~~~~~~~~~~v~~ll~~~-G~-~~~~~e~~~~~~~~~~~~~~~~~~~ 188 (272)
.. .+-.-|.. +... ..-..++..+ +++..+.++++++.+ +. .++.++......++++.+.|...-+
T Consensus 170 ~~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~---~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a~~I 246 (478)
T 3g79_A 170 AGEDFALAHAPERVMVGRLLKNIREHDRIVGGI---DEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQI 246 (478)
T ss_dssp BTTTBEEEECCCCCCTTSHHHHHHHSCEEEEES---SHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceeEEeCCccCCccchhhhhcCCcEEEEeC---CHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 11 12223321 1111 1111344333 688889999999999 64 5666666666677776444444333
Q ss_pred ---HHHHHHHHHcCCCHHHHHHHHH
Q 024121 189 ---EALADGGVAAGLPRELALGLAS 210 (272)
Q Consensus 189 ---~~l~~~~~~~Gl~~~~a~~~~~ 210 (272)
..+...+++.|+|.++..+.+.
T Consensus 247 a~~nE~~~l~e~~GiD~~~v~~~~~ 271 (478)
T 3g79_A 247 AAINQLALYCEAMGINVYDVRTGVD 271 (478)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHC
Confidence 3333356899999999888765
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-14 Score=127.19 Aligned_cols=184 Identities=17% Similarity=0.167 Sum_probs=126.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC--------------------ceeecCchhhhc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG--------------------VKVLSDNNAVVE 70 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g--------------------~~~~~~~~~~~~ 70 (272)
.|+.|||+|.||.+||.+|.++|| +|++| ||++++++.+.+.. +..+++ ++
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~G~----~V~~~-D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd----~~ 82 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKHGV----DVLGV-DINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTT----PE 82 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESS----CC
T ss_pred CccEEEeeCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCc----hh
Confidence 589999999999999999999999 99999 99999999887621 222222 45
Q ss_pred cCCEEEEeeCccc------------HHHHHHHhchhcCCCCEEEEEcCCCCHH---HHHHH----hCC---CC-EEEEcc
Q 024121 71 YSDVVVFSVKPQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEW----TGH---SR-FIRVMP 127 (272)
Q Consensus 71 ~aDivil~v~~~~------------~~~v~~~l~~~l~~~~~iis~~~~~~~~---~l~~~----~~~---~~-~~~~~p 127 (272)
+||+||+|||... +..+.+++.++++++++||.. +++++. .+.+. .+. .. .+-.-|
T Consensus 83 ~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~-STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~P 161 (431)
T 3ojo_A 83 ASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVE-STIAPKTMDDFVKPVIENLGFTIGEDIYLVHCP 161 (431)
T ss_dssp CCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEEC-SCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECC
T ss_pred hCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEe-cCCChhHHHHHHHHHHHHcCCCcCCCeEEEECC
Confidence 8999999997432 677778899999999988865 566543 23221 110 11 122223
Q ss_pred CchhhhcCCc---------eEEEeCCCCCHHHHHHHHHHhhhcCC-eEEcCcccchhHHHchHHHHHHHH---HHHHHHH
Q 024121 128 NTPSAVGEAA---------TVMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLSGPAYIFLA---IEALADG 194 (272)
Q Consensus 128 ~~~~~~~~g~---------~~~~~~~~~~~~~~~~v~~ll~~~G~-~~~~~e~~~~~~~~~~~~~~~~~~---~~~l~~~ 194 (272)
. ....|. .++. |. +++..+.++++++.+++ .++.++......++++.+.|...- +..+...
T Consensus 162 e---~~~~G~A~~~~~~p~~Iv~-G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l 235 (431)
T 3ojo_A 162 E---RVLPGKILEELVHNNRIIG-GV--TKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKI 235 (431)
T ss_dssp C---CCCTTSHHHHHHHSCEEEE-ES--SHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---cCCCcchhhcccCCCEEEE-eC--CHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111221 3443 42 68899999999999985 466666666677777644444332 3333445
Q ss_pred HHHcCCCHHHHHHHHH
Q 024121 195 GVAAGLPRELALGLAS 210 (272)
Q Consensus 195 ~~~~Gl~~~~a~~~~~ 210 (272)
+.+.|+|.++..+.+.
T Consensus 236 ~e~~GiD~~~v~~~~~ 251 (431)
T 3ojo_A 236 CNNLNINVLDVIEMAN 251 (431)
T ss_dssp HHHTTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHc
Confidence 7899999998887765
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-15 Score=130.45 Aligned_cols=150 Identities=12% Similarity=0.097 Sum_probs=103.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc---eeecCchhhh-ccCCEEEEeeCcccHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV---KVLSDNNAVV-EYSDVVVFSVKPQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~---~~~~~~~~~~-~~aDivil~v~~~~~~ 85 (272)
+|||+|||+|+||++++..|.++|+ +|++| +|+++.++.....|. .+..++.+.+ .++|+||+|||+++++
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~~~~ 76 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQSLP----HTTLI-GRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQLD 76 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHHCT----TCEEE-ESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGGGHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC----eEEEE-EeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCccCHH
Confidence 4799999999999999999999998 99999 998765432111232 2333445544 7899999999999999
Q ss_pred HHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEcc------CchhhhcCCceEEEeCCCCCHHHHHHHHHHhh
Q 024121 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMP------NTPSAVGEAATVMSLGGTATEEDGELIGKLFG 159 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p------~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~ 159 (272)
++++++.+++.++++||++.+|+..+.. ++..+++.... ..|..+..+...+..+ +.+..+.+.++|+
T Consensus 77 ~~l~~l~~~l~~~~~iv~~~nGi~~~~~---~~~~~v~~g~~~~~a~~~~pg~v~~~~~~~~~~---~~~~~~~l~~~l~ 150 (294)
T 3g17_A 77 AVIPHLTYLAHEDTLIILAQNGYGQLEH---IPFKNVCQAVVYISGQKKGDVVTHFRDYQLRIQ---DNALTRQFRDLVQ 150 (294)
T ss_dssp HHGGGHHHHEEEEEEEEECCSSCCCGGG---CCCSCEEECEEEEEEEEETTEEEEEEEEEEEEE---CSHHHHHHHHHTT
T ss_pred HHHHHHHHhhCCCCEEEEeccCcccHhh---CCCCcEEEEEEEEEEEEcCCCEEEECCCEEecC---ccHHHHHHHHHHH
Confidence 9999999999889999999999987653 55434433211 1122111111122222 3466788889998
Q ss_pred hcCCeEEcCcc
Q 024121 160 SVGKIWRADEK 170 (272)
Q Consensus 160 ~~G~~~~~~e~ 170 (272)
..|-..+.+++
T Consensus 151 ~~~~~~~~~~d 161 (294)
T 3g17_A 151 DSQIDIVLEAN 161 (294)
T ss_dssp TSSCEEEEESS
T ss_pred hCCCceEEChH
Confidence 87755444444
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-14 Score=122.98 Aligned_cols=94 Identities=19% Similarity=0.233 Sum_probs=80.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-Cc--------------eeecCchhhhccC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-GV--------------KVLSDNNAVVEYS 72 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-g~--------------~~~~~~~~~~~~a 72 (272)
|++|||+|||+|.||+.++..|.++|+ +|++| +|++++.+.+.+. ++ ....+..++++++
T Consensus 2 m~~mki~iiG~G~~G~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (359)
T 1bg6_A 2 IESKTYAVLGLGNGGHAFAAYLALKGQ----SVLAW-DIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDA 76 (359)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTC
T ss_pred CCcCeEEEECCCHHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcC
Confidence 556899999999999999999999999 99999 9999998888764 32 2445667778899
Q ss_pred CEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcC
Q 024121 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 73 Divil~v~~~~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
|+||+|||++...+++.++.++++++++|+++.+
T Consensus 77 D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~~~ 110 (359)
T 1bg6_A 77 DVILIVVPAIHHASIAANIASYISEGQLIILNPG 110 (359)
T ss_dssp SEEEECSCGGGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred CEEEEeCCchHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 9999999999999999999999999998998743
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.9e-13 Score=116.49 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=106.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCC----CCCcEEEEeCCCHHH-----HHHHHH--------------cCceeecCchh
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVL----PPDRICTAVHSNLKR-----RDAFES--------------IGVKVLSDNNA 67 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~----~~~~V~v~~~r~~~~-----~~~l~~--------------~g~~~~~~~~~ 67 (272)
.||+|||+|.||+++|..|.++|+- ...+|.+| .|+++. .+.+.+ .++.++.|..+
T Consensus 35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw-~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~ 113 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMW-VFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLID 113 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEE-CCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEE-EcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHH
Confidence 5999999999999999999988740 00149999 887642 222222 13566778889
Q ss_pred hhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH---------HHHHHHhCCCCE-EEEccCchhhhcCCc
Q 024121 68 VVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL---------KDLQEWTGHSRF-IRVMPNTPSAVGEAA 137 (272)
Q Consensus 68 ~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~---------~~l~~~~~~~~~-~~~~p~~~~~~~~g~ 137 (272)
+++++|+||++||.+.+++++.++.+++++++.+|+++.|+.. +.+.+.++ .++ +-.-|++...+..+.
T Consensus 114 al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~-~~~~vLsGPs~A~EVa~~~ 192 (391)
T 4fgw_A 114 SVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELG-IQCGALSGANIATEVAQEH 192 (391)
T ss_dssp HHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHC-CEEEEEECSCCHHHHHTTC
T ss_pred HHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhC-ccceeccCCchHHHhhcCC
Confidence 9999999999999999999999999999999999999999742 23444444 333 223588887776654
Q ss_pred e-EE-EeCCC-------CCHHHHHHHHHHhhhcCCeEEcCcc
Q 024121 138 T-VM-SLGGT-------ATEEDGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 138 ~-~~-~~~~~-------~~~~~~~~v~~ll~~~G~~~~~~e~ 170 (272)
. .+ ..... .+....+.++.+|..---.++.+++
T Consensus 193 pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~D 234 (391)
T 4fgw_A 193 WSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIED 234 (391)
T ss_dssp CEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESC
T ss_pred CceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 2 22 22211 1122346677877653322344443
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-11 Score=116.67 Aligned_cols=156 Identities=19% Similarity=0.206 Sum_probs=123.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---------------c-------CceeecC
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---------------I-------GVKVLSD 64 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---------------~-------g~~~~~~ 64 (272)
++..+||+|||+|.||+.||..+..+|+ +|+++ |++++.+++..+ . .+....+
T Consensus 313 ~~~i~~v~ViGaG~MG~gIA~~~a~aG~----~V~l~-D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (742)
T 3zwc_A 313 AQPVSSVGVLGLGTMGRGIAISFARVGI----SVVAV-ESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSS 387 (742)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESC
T ss_pred cccccEEEEEcccHHHHHHHHHHHhCCC----chhcc-cchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCc
Confidence 3456899999999999999999999999 99999 999876543221 0 1233344
Q ss_pred chhhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEE
Q 024121 65 NNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~ 141 (272)
. +.+.+||+||-+|+-+ .-++++.++.++.+++.++.|.+|++++..+.+.+. ..++++.|+..|...-. +.-+.
T Consensus 388 ~-~~l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~-LVEvi 465 (742)
T 3zwc_A 388 T-KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMR-LLEVI 465 (742)
T ss_dssp G-GGGGSCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCC-EEEEE
T ss_pred H-HHHhhCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCc-eEEEe
Confidence 4 4478999999999754 346888999999999999999999999999988765 36799999877776543 33355
Q ss_pred eCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024121 142 LGGTATEEDGELIGKLFGSVGKI-WRADE 169 (272)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 169 (272)
+++.++++.++.+..+.+.+|+. ++..+
T Consensus 466 ~g~~Ts~e~~~~~~~~~~~lgK~pV~vkd 494 (742)
T 3zwc_A 466 PSRYSSPTTIATVMSLSKKIGKIGVVVGN 494 (742)
T ss_dssp ECSSCCHHHHHHHHHHHHHTTCEEEECCC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCcccCC
Confidence 78889999999999999999976 55543
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-10 Score=102.02 Aligned_cols=205 Identities=16% Similarity=0.126 Sum_probs=139.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH------HHHHHHHHcCceeecCchhhhccCCEEEEeeC
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL------KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~------~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~ 80 (272)
..+.++|+|||+|.-|.+-|.+|.++|. +|.+- -|.. ...+++.+.|..+. +..|+++.+|+|++.+|
T Consensus 34 ~lkgK~IaVIGyGsQG~AqAlNLRDSGv----~V~Vg-lr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~~ADvV~~L~P 107 (491)
T 3ulk_A 34 YLQGKKVVIVGCGAQGLNQGLNMRDSGL----DISYA-LRKEAIAEKRASWRKATENGFKVG-TYEELIPQADLVINLTP 107 (491)
T ss_dssp GGTTSEEEEESCSHHHHHHHHHHHHTTC----EEEEE-ECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGGCSEEEECSC
T ss_pred HHcCCEEEEeCCChHhHHHHhHHHhcCC----cEEEE-eCCCCcccccchHHHHHHCCCEec-CHHHHHHhCCEEEEeCC
Confidence 3466899999999999999999999999 99888 6632 34556666898875 68899999999999999
Q ss_pred cccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhh-------cCCceEEEeC---CCCCHH
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAV-------GEAATVMSLG---GTATEE 149 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~-------~~g~~~~~~~---~~~~~~ 149 (272)
+..-.++++.|.|++++|+++. .+.|..+..-.-..| +..++-+-|-.|.+. +.|+..++.- .+.+..
T Consensus 108 D~~q~~vy~~I~p~lk~G~~L~-faHGFnI~~~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~liAVhqeqD~sG~ 186 (491)
T 3ulk_A 108 DKQHSDVVRTVQPLMKDGAALG-YSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGE 186 (491)
T ss_dssp GGGHHHHHHHHGGGSCTTCEEE-ESSCHHHHTTCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEEEEECGGGCTTSC
T ss_pred hhhHHHHHHHHHhhCCCCCEEE-ecCcccccccccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceEEEEEeCCCCchh
Confidence 9999999999999999999877 566764432111112 456777767766542 5566544322 233456
Q ss_pred HHHHHHHHhhhcCC--e--EEc---CcccchhHH---HchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 024121 150 DGELIGKLFGSVGK--I--WRA---DEKLFDAIT---GLSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASM 219 (272)
Q Consensus 150 ~~~~v~~ll~~~G~--~--~~~---~e~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~ 219 (272)
..+....+-..+|. . +.. .|...|.+. .+|| .+..++.+..+...+.|.+|+.+.........-..++
T Consensus 187 a~~~AlayA~aiG~~raGvieTTF~eEtetDLfGEQaVLcG--gl~~li~agFetLveaGy~P~~a~~~~~~e~klIvdl 264 (491)
T 3ulk_A 187 GMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCG--MLQAGSLLCFDKLVEEGTDPAYAEKLIQFGWETITEA 264 (491)
T ss_dssp HHHHHHHHHHHHTGGGTCEEECCHHHHHHHHHHHHHTTTTH--HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCceeeccHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHH
Confidence 77888888888883 2 222 233344443 3442 2334444555677889999988765554433333444
Q ss_pred H
Q 024121 220 V 220 (272)
Q Consensus 220 ~ 220 (272)
+
T Consensus 265 i 265 (491)
T 3ulk_A 265 L 265 (491)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=9.1e-13 Score=117.06 Aligned_cols=95 Identities=16% Similarity=0.223 Sum_probs=78.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeC---CCHHHHHHH-HHcC------------c-------eeecCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVH---SNLKRRDAF-ESIG------------V-------KVLSDN 65 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~---r~~~~~~~l-~~~g------------~-------~~~~~~ 65 (272)
+|||+|||+|.||++++..|.+ +|+ +|++| + |++++.+.+ .+.| . .++.++
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G~----~V~~~-~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDGV----EVRVL-TLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDP 76 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTE----EEEEE-CCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCH
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCC----EEEEE-eCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCH
Confidence 4799999999999999999988 599 99999 9 888887774 3332 1 134566
Q ss_pred hhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 66 NAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 66 ~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
.++++++|+||+|||++..+++++++.++++++++|++..++..
T Consensus 77 ~~a~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~~~~~G 120 (404)
T 3c7a_A 77 EIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAG 120 (404)
T ss_dssp HHHHTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEETTCCTT
T ss_pred HHHhCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEcCCCcc
Confidence 67788999999999999999999999999988999998655554
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-12 Score=118.83 Aligned_cols=164 Identities=12% Similarity=0.144 Sum_probs=110.5
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
.....++|||||+|+||+++|++|...|+ +|++| ||++.. +...+.|+... +..+++++||+|++|+|+. ..
T Consensus 138 ~~l~g~~vgIIG~G~IG~~vA~~l~~~G~----~V~~~-d~~~~~-~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~t 210 (529)
T 1ygy_A 138 TEIFGKTVGVVGLGRIGQLVAQRIAAFGA----YVVAY-DPYVSP-ARAAQLGIELL-SLDDLLARADFISVHLPKTPET 210 (529)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CTTSCH-HHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTTT
T ss_pred cccCCCEEEEEeeCHHHHHHHHHHHhCCC----EEEEE-CCCCCh-hHHHhcCcEEc-CHHHHHhcCCEEEECCCCchHH
Confidence 34566899999999999999999999999 99999 998643 34455687765 7888999999999999987 67
Q ss_pred HHHHHH-hchhcCCCCEEEEEcCCCC--HHHHHHHhCCCCEE----EEccCchh----hhcCCceEEEeCCC-CCHHHHH
Q 024121 85 KDVAMQ-IRPLLSRKKLLVSVAAGVK--LKDLQEWTGHSRFI----RVMPNTPS----AVGEAATVMSLGGT-ATEEDGE 152 (272)
Q Consensus 85 ~~v~~~-l~~~l~~~~~iis~~~~~~--~~~l~~~~~~~~~~----~~~p~~~~----~~~~g~~~~~~~~~-~~~~~~~ 152 (272)
..++.+ +.+.++++.++++++.+-. ...+.+.+...++. .+.+..|. .......+++|... .+.+..+
T Consensus 211 ~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~ 290 (529)
T 1ygy_A 211 AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQD 290 (529)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHH
T ss_pred HHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHH
Confidence 777654 6667889999999876543 34455555422221 12233332 11223455666544 4566555
Q ss_pred H-----HHHHhhhcC-Ce----EEcC-cccchhHH
Q 024121 153 L-----IGKLFGSVG-KI----WRAD-EKLFDAIT 176 (272)
Q Consensus 153 ~-----v~~ll~~~G-~~----~~~~-e~~~~~~~ 176 (272)
. ++.+.+.++ .. +.++ ++.|+.+.
T Consensus 291 ~~~~~~~~~l~~~l~~~~~~~~v~~~~~~~hd~i~ 325 (529)
T 1ygy_A 291 RAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVA 325 (529)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTBCSCCSTTSCTTTT
T ss_pred HHHHHHHHHHHHHHcCCCCCcccCCcccccchhhh
Confidence 3 666666665 22 3456 56666654
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-10 Score=103.47 Aligned_cols=198 Identities=13% Similarity=0.126 Sum_probs=126.1
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------c-Cceeec
Q 024121 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------I-GVKVLS 63 (272)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~-g~~~~~ 63 (272)
.|+...+.+|+|||+|-+|..+|..|.+.|| +|+++ |.++++.+.+.+ . .+..++
T Consensus 15 ~p~~~~m~~IaViGlGYVGLp~A~~~A~~G~----~V~g~-Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt 89 (444)
T 3vtf_A 15 VPRGSHMASLSVLGLGYVGVVHAVGFALLGH----RVVGY-DVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAE 89 (444)
T ss_dssp CCTTCCCCEEEEECCSHHHHHHHHHHHHHTC----EEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECS
T ss_pred CCCCCCCCEEEEEccCHHHHHHHHHHHhCCC----cEEEE-ECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEc
Confidence 4666678899999999999999999999999 99999 999999877753 1 234566
Q ss_pred CchhhhccCCEEEEeeCc----------ccHHHHHHHhchhcC---CCCEEEEEcCCCCH---HH-HHHHh----CCCCE
Q 024121 64 DNNAVVEYSDVVVFSVKP----------QVVKDVAMQIRPLLS---RKKLLVSVAAGVKL---KD-LQEWT----GHSRF 122 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~----------~~~~~v~~~l~~~l~---~~~~iis~~~~~~~---~~-l~~~~----~~~~~ 122 (272)
+..+++.++|++|+|||. ..+.++.+.+.++++ ++++||.- +++++ +. ....+ ++..+
T Consensus 90 ~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~e-STVppGtte~~~~~~l~~~~~~~~f 168 (444)
T 3vtf_A 90 SAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVK-STVPPGTTEGLVARAVAEEAGGVKF 168 (444)
T ss_dssp SHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEEC-SCCCTTTTTTHHHHHHHTTTTTCCC
T ss_pred CHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEe-CCCCCchHHHHHHHHHHHhCCCCCc
Confidence 778889999999999952 135667777776664 46677732 33332 22 22222 22222
Q ss_pred -EEEccC-----chhhh-cCCceEEEeCCCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHH---HHHHHHH
Q 024121 123 -IRVMPN-----TPSAV-GEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYI---FLAIEAL 191 (272)
Q Consensus 123 -~~~~p~-----~~~~~-~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~---~~~~~~l 191 (272)
+...|- ..... ..-.-++..+ .++...+.+.++++.+... +..+. ....++++..+.|. ..+++.+
T Consensus 169 ~v~~~PErl~eG~a~~d~~~~~riViG~--~~~~a~~~~~~ly~~~~~~~~~~~~-~~AE~~Kl~eN~~ravnIa~~NEl 245 (444)
T 3vtf_A 169 SVASNPEFLREGSALEDFFKPDRIVIGA--GDERAASFLLDVYKAVDAPKLVMKP-REAELVKYASNVFLALKISFANEV 245 (444)
T ss_dssp EEEECCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHTTTSCSCEEEECH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecCcccccCCccccccccCCcEEEcC--CCHHHHHHHHHHHhccCCCEEEech-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223232 11111 1111123222 2567788899999988755 44443 23445555533333 2456667
Q ss_pred HHHHHHcCCCHHHHHHHHH
Q 024121 192 ADGGVAAGLPRELALGLAS 210 (272)
Q Consensus 192 ~~~~~~~Gl~~~~a~~~~~ 210 (272)
...+.+.|+|..+..+.+.
T Consensus 246 a~ice~~GiDv~eV~~a~~ 264 (444)
T 3vtf_A 246 GLLAKRLGVDTYRVFEAVG 264 (444)
T ss_dssp HHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHhc
Confidence 7778899999888766653
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-12 Score=111.36 Aligned_cols=108 Identities=16% Similarity=0.219 Sum_probs=85.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-c
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-V 83 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~ 83 (272)
.....++|||||+|+||+++++.+. ..|+ +|.+| +|++++.+...+.|+....+..+++++||+|++++|.. .
T Consensus 159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~----~V~~~-d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~ 233 (348)
T 2w2k_A 159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGM----KLVYY-DVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKL 233 (348)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTCC----EEEEE-CSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGG
T ss_pred cCCCCCEEEEEEECHHHHHHHHHHHHhcCC----EEEEE-CCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChH
Confidence 4456789999999999999999999 9998 99999 99877665555567776667788899999999999875 3
Q ss_pred HHHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 84 VKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 84 ~~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
.+.++ .++.+.++++.++|+++.+ +..+.+.+.+.
T Consensus 234 t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~ 271 (348)
T 2w2k_A 234 THHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALK 271 (348)
T ss_dssp GTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHH
Confidence 55555 2455567889999988766 55567777665
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-12 Score=111.68 Aligned_cols=107 Identities=15% Similarity=0.262 Sum_probs=83.6
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
.....++|||||+|.||+++++.+...|+ +|.+| +|++++.+.+.+.|+... +..++++++|+|++++|.. ..
T Consensus 151 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~t 224 (330)
T 2gcg_A 151 YGLTQSTVGIIGLGRIGQAIARRLKPFGV----QRFLY-TGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPAT 224 (330)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHGGGTC----CEEEE-ESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTTT
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChHH
Confidence 34567899999999999999999999999 99999 998766666666677765 7788899999999999865 34
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
+.++ .++.+.++++.++|+++.+ +..+.+.+.+.
T Consensus 225 ~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~ 261 (330)
T 2gcg_A 225 EGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALA 261 (330)
T ss_dssp TTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 4444 3455667889999988766 45566666554
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=6.6e-12 Score=107.88 Aligned_cols=106 Identities=13% Similarity=0.113 Sum_probs=82.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
....++|||||+|+||+++++.+...|+ +|.+| +| ++++ ....+.|+....+.++++++||+|++++|.. ..
T Consensus 143 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~~-~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t 216 (320)
T 1gdh_A 143 KLDNKTLGIYGFGSIGQALAKRAQGFDM----DIDYF-DTHRASS-SDEASYQATFHDSLDSLLSVSQFFSLNAPSTPET 216 (320)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSSCCCH-HHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTT
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCCcCh-hhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHH
Confidence 4556899999999999999999999998 99999 99 8765 3444568776657889999999999999864 35
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
..++ .+..+.++++.++|+++.| +..+.+.+.+.
T Consensus 217 ~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~ 253 (320)
T 1gdh_A 217 RYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALE 253 (320)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 5444 3355667899999998766 45566666664
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.4e-12 Score=107.55 Aligned_cols=121 Identities=12% Similarity=0.195 Sum_probs=88.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
...++|+|||+|.||.+++..|.+.|+ +|++| +|++++++.+.+ .|+.+..+..+.++++|+||.|+|+....+
T Consensus 127 ~~~~~v~iiGaG~~g~aia~~L~~~g~----~V~v~-~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~ 201 (275)
T 2hk9_A 127 VKEKSILVLGAGGASRAVIYALVKEGA----KVFLW-NRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDE 201 (275)
T ss_dssp GGGSEEEEECCSHHHHHHHHHHHHHTC----EEEEE-CSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTT
T ss_pred cCCCEEEEECchHHHHHHHHHHHHcCC----EEEEE-ECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCC
Confidence 356899999999999999999999998 99999 999999888876 577766677788899999999998775432
Q ss_pred HHHHh-chhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCchhhhcCC
Q 024121 87 VAMQI-RPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEA 136 (272)
Q Consensus 87 v~~~l-~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~g 136 (272)
+...+ .+.++++++++|+.. .....++.... ..++++|+.+..++++
T Consensus 202 ~~~~i~~~~l~~g~~viDv~~-~~t~ll~~a~~--~g~~~v~g~~mlv~q~ 249 (275)
T 2hk9_A 202 DPEIFNYDLIKKDHVVVDIIY-KETKLLKKAKE--KGAKLLDGLPMLLWQG 249 (275)
T ss_dssp CCCSSCGGGCCTTSEEEESSS-SCCHHHHHHHH--TTCEEECSHHHHHHHH
T ss_pred CCCCCCHHHcCCCCEEEEcCC-ChHHHHHHHHH--CcCEEECCHHHHHHHH
Confidence 11112 245678999999866 44444443322 1235677777665543
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6e-12 Score=108.82 Aligned_cols=105 Identities=19% Similarity=0.242 Sum_probs=81.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-HH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-VK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~~ 85 (272)
....++|||||+|.||.++++.+...|+ +|.+| +|++++ +...+.|+.. .+..+++++||+|++|+|... .+
T Consensus 147 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~----~V~~~-d~~~~~-~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~~t~ 219 (334)
T 2dbq_A 147 DVYGKTIGIIGLGRIGQAIAKRAKGFNM----RILYY-SRTRKE-EVERELNAEF-KPLEDLLRESDFVVLAVPLTRETY 219 (334)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCH-HHHHHHCCEE-CCHHHHHHHCSEEEECCCCCTTTT
T ss_pred CCCCCEEEEEccCHHHHHHHHHHHhCCC----EEEEE-CCCcch-hhHhhcCccc-CCHHHHHhhCCEEEECCCCChHHH
Confidence 4566899999999999999999999999 99999 998876 4444567765 477888999999999998764 55
Q ss_pred HHH-HHhchhcCCCCEEEEEcCCCC--HHHHHHHhC
Q 024121 86 DVA-MQIRPLLSRKKLLVSVAAGVK--LKDLQEWTG 118 (272)
Q Consensus 86 ~v~-~~l~~~l~~~~~iis~~~~~~--~~~l~~~~~ 118 (272)
.++ .++.+.++++.++|+++.|.. .+.+.+.+.
T Consensus 220 ~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~ 255 (334)
T 2dbq_A 220 HLINEERLKLMKKTAILINIARGKVVDTNALVKALK 255 (334)
T ss_dssp TCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 555 345566789999998876643 345655554
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=7.6e-12 Score=107.87 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=80.1
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
.....++|||||+|+||+++++.+...|+ +|.+| +|++++. .|+....+.++++++||+|++++|.. ..
T Consensus 160 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~----~V~~~-dr~~~~~-----~g~~~~~~l~ell~~aDvVil~vP~~~~t 229 (333)
T 3ba1_A 160 TKFSGKRVGIIGLGRIGLAVAERAEAFDC----PISYF-SRSKKPN-----TNYTYYGSVVELASNSDILVVACPLTPET 229 (333)
T ss_dssp CCCTTCCEEEECCSHHHHHHHHHHHTTTC----CEEEE-CSSCCTT-----CCSEEESCHHHHHHTCSEEEECSCCCGGG
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCCchhc-----cCceecCCHHHHHhcCCEEEEecCCChHH
Confidence 34567899999999999999999999999 99999 9987643 26665667888899999999999975 45
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCCCC--HHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAGVK--LKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~~~--~~~l~~~~~ 118 (272)
+.++ .+..+.++++.++|+++.|.. .+.+.+.+.
T Consensus 230 ~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~ 266 (333)
T 3ba1_A 230 THIINREVIDALGPKGVLINIGRGPHVDEPELVSALV 266 (333)
T ss_dssp TTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHH
Confidence 5555 334456788999999876643 355655554
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=106.55 Aligned_cols=108 Identities=17% Similarity=0.222 Sum_probs=84.2
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCc-EEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-c
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-V 83 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~-V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~ 83 (272)
.....++|||||+|+||.++++.+...|+ + |.+| +|++.+.+...+.|+....+.++++++||+|++++|.. .
T Consensus 160 ~~l~g~tvgIIG~G~IG~~vA~~l~~~G~----~~V~~~-d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~ 234 (364)
T 2j6i_A 160 YDIEGKTIATIGAGRIGYRVLERLVPFNP----KELLYY-DYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAG 234 (364)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHGGGCC----SEEEEE-CSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTT
T ss_pred ccCCCCEEEEECcCHHHHHHHHHHHhCCC----cEEEEE-CCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChH
Confidence 34567899999999999999999999998 8 9999 99876665556678776668889999999999999875 4
Q ss_pred HHHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 84 VKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 84 ~~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
.+.++ .+..+.++++.++|+++.| +..+.+.+.+.
T Consensus 235 t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~ 272 (364)
T 2j6i_A 235 TKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALE 272 (364)
T ss_dssp TTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHH
Confidence 44444 3345667899999988765 34456666654
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=104.38 Aligned_cols=106 Identities=17% Similarity=0.247 Sum_probs=80.6
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-H
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~ 84 (272)
.....++|||||+|+||+++++.+...|+ +|.+| +|++++. ...+.|+.. .+.+++++++|+|++++|... .
T Consensus 138 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~~-~~~~~g~~~-~~l~ell~~aDvVvl~~P~~~~t 210 (313)
T 2ekl_A 138 LELAGKTIGIVGFGRIGTKVGIIANAMGM----KVLAY-DILDIRE-KAEKINAKA-VSLEELLKNSDVISLHVTVSKDA 210 (313)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHTTC----EEEEE-CSSCCHH-HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTS
T ss_pred CCCCCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-CCCcchh-HHHhcCcee-cCHHHHHhhCCEEEEeccCChHH
Confidence 34566899999999999999999999999 99999 9988764 345577765 478889999999999998543 4
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
+.++ .+..+.++++.++|+++.| +..+.+.+.+.
T Consensus 211 ~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~ 247 (313)
T 2ekl_A 211 KPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIK 247 (313)
T ss_dssp CCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHH
T ss_pred HHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH
Confidence 3333 3344557889999988665 33456666664
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-11 Score=106.39 Aligned_cols=107 Identities=13% Similarity=0.178 Sum_probs=83.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|+||+++++.+...|+ +|.+| +|++.+.+...+.|+....+.++++++||+|++++|.. ..+
T Consensus 188 ~l~gktvGIIGlG~IG~~vA~~l~a~G~----~V~~~-d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~ 262 (393)
T 2nac_A 188 DLEAMHVGTVAAGRIGLAVLRRLAPFDV----HLHYT-DRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETE 262 (393)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHGGGTC----EEEEE-CSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTT
T ss_pred cCCCCEEEEEeECHHHHHHHHHHHhCCC----EEEEE-cCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHH
Confidence 4567899999999999999999999998 99999 99875555555578776667889999999999999853 445
Q ss_pred HHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 86 DVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 86 ~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.++ .+..+.++++.++|+++.|- ..+.+.+.+.
T Consensus 263 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 298 (393)
T 2nac_A 263 HMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE 298 (393)
T ss_dssp TCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHH
Confidence 555 34556678999999887653 3455666664
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.8e-11 Score=104.35 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=69.8
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~ 84 (272)
.....++|||||+|+||+++|+++...|+ +|.+| +|++++ ..+.....+..+++++||+|++++|. ...
T Consensus 167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~----~V~~~-dr~~~~-----~~~~~~~~sl~ell~~aDvVil~vP~t~~t 236 (340)
T 4dgs_A 167 HSPKGKRIGVLGLGQIGRALASRAEAFGM----SVRYW-NRSTLS-----GVDWIAHQSPVDLARDSDVLAVCVAASAAT 236 (340)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSSCCT-----TSCCEECSSHHHHHHTCSEEEECC------
T ss_pred ccccCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCccc-----ccCceecCCHHHHHhcCCEEEEeCCCCHHH
Confidence 34567899999999999999999999999 99999 998754 23455567889999999999999984 455
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCCCCH--HHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~ 118 (272)
+.++ .+..+.++++.++|+++.|-.. +.+.+.+.
T Consensus 237 ~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~ 273 (340)
T 4dgs_A 237 QNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALK 273 (340)
T ss_dssp ----CHHHHHHTTTTCEEEECSCC-------------
T ss_pred HHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH
Confidence 6666 4556678899999998766433 34444443
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-11 Score=106.40 Aligned_cols=108 Identities=17% Similarity=0.241 Sum_probs=84.1
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
.....++|||||+|+||+++++.+...|+ +|.+| +|++...+...+.|+....+.++++++||+|++++|.. ..
T Consensus 160 ~~l~gktvGIIG~G~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t 234 (351)
T 3jtm_A 160 YDLEGKTIGTVGAGRIGKLLLQRLKPFGC----NLLYH-DRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKT 234 (351)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHGGGCC----EEEEE-CSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTT
T ss_pred ccccCCEEeEEEeCHHHHHHHHHHHHCCC----EEEEe-CCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHH
Confidence 34567899999999999999999999999 99999 99876666666678877778999999999999999853 44
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
..++ .+....++++.++|+++.| +..+.+.+.+.
T Consensus 235 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 271 (351)
T 3jtm_A 235 RGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVE 271 (351)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHH
Confidence 4333 3444557899999988654 34456666654
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-11 Score=105.42 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=81.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|+||+++++++...|+ +|.+| +|++++. .....|+....+.++++++||+|++++|.. ..+
T Consensus 165 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~----~V~~~-d~~~~~~-~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~ 238 (347)
T 1mx3_A 165 RIRGETLGIIGLGRVGQAVALRAKAFGF----NVLFY-DPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNH 238 (347)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCT
T ss_pred CCCCCEEEEEeECHHHHHHHHHHHHCCC----EEEEE-CCCcchh-hHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHH
Confidence 4567899999999999999999999999 99999 9976542 223467766668889999999999999864 455
Q ss_pred HHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 86 DVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 86 ~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.++ .+..+.++++.++|+++.|- ..+.+.+.+.
T Consensus 239 ~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~ 274 (347)
T 1mx3_A 239 HLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALK 274 (347)
T ss_dssp TSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred HHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHH
Confidence 555 34455678999999987663 3455666554
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-11 Score=106.03 Aligned_cols=105 Identities=19% Similarity=0.255 Sum_probs=80.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
.....++|||||+|.||+++++.+...|+ +|.+| +|++++ +...+.|+... +..+++++||+|++|+|.. ..
T Consensus 142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~----~V~~~-d~~~~~-~~~~~~g~~~~-~l~e~l~~aDiVil~vp~~~~t 214 (333)
T 2d0i_A 142 ESLYGKKVGILGMGAIGKAIARRLIPFGV----KLYYW-SRHRKV-NVEKELKARYM-DIDELLEKSDIVILALPLTRDT 214 (333)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHGGGTC----EEEEE-CSSCCH-HHHHHHTEEEC-CHHHHHHHCSEEEECCCCCTTT
T ss_pred CCCCcCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCCcch-hhhhhcCceec-CHHHHHhhCCEEEEcCCCChHH
Confidence 34567899999999999999999999999 99999 998876 44445677654 7788889999999999876 55
Q ss_pred HHHHH-HhchhcCCCCEEEEEcCCCC--HHHHHHHhC
Q 024121 85 KDVAM-QIRPLLSRKKLLVSVAAGVK--LKDLQEWTG 118 (272)
Q Consensus 85 ~~v~~-~l~~~l~~~~~iis~~~~~~--~~~l~~~~~ 118 (272)
+.++. ++.+.++++ ++|+++.+.. .+.+.+.+.
T Consensus 215 ~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~ 250 (333)
T 2d0i_A 215 YHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIK 250 (333)
T ss_dssp TTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHH
T ss_pred HHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHH
Confidence 55553 345567889 9998876543 334555554
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.9e-11 Score=103.22 Aligned_cols=105 Identities=19% Similarity=0.237 Sum_probs=80.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-HH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-VK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~~ 85 (272)
....++|||||+|+||+++++.+...|+ +|.+| +|++++ +...+.|+... +.++++++||+|++++|... .+
T Consensus 139 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~-~~~~~~g~~~~-~l~ell~~aDvV~l~~p~~~~t~ 211 (307)
T 1wwk_A 139 ELEGKTIGIIGFGRIGYQVAKIANALGM----NILLY-DPYPNE-ERAKEVNGKFV-DLETLLKESDVVTIHVPLVESTY 211 (307)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCH-HHHHHTTCEEC-CHHHHHHHCSEEEECCCCSTTTT
T ss_pred ccCCceEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCCCCh-hhHhhcCcccc-CHHHHHhhCCEEEEecCCChHHh
Confidence 4556899999999999999999999999 99999 998866 44555777653 77888999999999998643 44
Q ss_pred HHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 86 DVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 86 ~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.++ .+..+.++++.++|+++.|- ..+.+.+.+.
T Consensus 212 ~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~ 247 (307)
T 1wwk_A 212 HLINEERLKLMKKTAILINTSRGPVVDTNALVKALK 247 (307)
T ss_dssp TCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred hhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 444 23445578999999886653 3445555553
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-11 Score=104.65 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=81.8
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
.....++|||||+|.||+++|+.+...|+ +|.+| +|++. .+...+.|+....+.++++++||+|++++|.. ..
T Consensus 156 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~-~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t 229 (352)
T 3gg9_A 156 RVLKGQTLGIFGYGKIGQLVAGYGRAFGM----NVLVW-GRENS-KERARADGFAVAESKDALFEQSDVLSVHLRLNDET 229 (352)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSHHH-HHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTT
T ss_pred ccCCCCEEEEEeECHHHHHHHHHHHhCCC----EEEEE-CCCCC-HHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHH
Confidence 34456899999999999999999999999 99999 99863 34455678887778899999999999999854 34
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
+.++ .+..+.++++.++|+++.|- ..+.+.+.+.
T Consensus 230 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~ 266 (352)
T 3gg9_A 230 RSIITVADLTRMKPTALFVNTSRAELVEENGMVTALN 266 (352)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHH
T ss_pred HHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHH
Confidence 4443 34456678999999886543 3445555553
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.3e-11 Score=101.98 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=72.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-cC--ceeecCchhhhccCCEEEEeeCcccH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IG--VKVLSDNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g--~~~~~~~~~~~~~aDivil~v~~~~~ 84 (272)
+.++|+|||+|.||.+++.+|.+. |+ .+|.+| ||++++.+++.+ .+ +..+.+..++++++|+|++|+|..
T Consensus 134 ~~~~igiIG~G~~g~~~a~~l~~~~g~---~~V~v~-dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~-- 207 (312)
T 2i99_A 134 SSEVLCILGAGVQAYSHYEIFTEQFSF---KEVRIW-NRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT-- 207 (312)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHCCC---SEEEEE-CSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS--
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCC---cEEEEE-cCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC--
Confidence 568999999999999999999886 64 389999 999999998877 36 777788889999999999999852
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
..++.. +.++++++|+++.
T Consensus 208 ~~v~~~--~~l~~g~~vi~~g 226 (312)
T 2i99_A 208 EPILFG--EWVKPGAHINAVG 226 (312)
T ss_dssp SCCBCG--GGSCTTCEEEECC
T ss_pred CcccCH--HHcCCCcEEEeCC
Confidence 333322 4578898888763
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.7e-11 Score=104.39 Aligned_cols=106 Identities=14% Similarity=0.237 Sum_probs=81.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|+||+++++.+...|+ +|.+| +|++.+.+.....|+... +..+++++||+|++++|.. ...
T Consensus 142 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~----~V~~~-d~~~~~~~~~~~~g~~~~-~l~ell~~aDvV~l~~P~t~~t~ 215 (330)
T 4e5n_A 142 GLDNATVGFLGMGAIGLAMADRLQGWGA----TLQYH-EAKALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTL 215 (330)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHTTTSCC----EEEEE-CSSCCCHHHHHHHTEEEC-CHHHHHHHCSEEEECCCCSTTTT
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-CCCCCcHhHHHhcCceeC-CHHHHHhhCCEEEEcCCCCHHHH
Confidence 3456899999999999999999999999 99999 998755555555677654 7889999999999999853 344
Q ss_pred HHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 86 ~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
.++ .+....++++.++|+++.| +..+.+.+.+.
T Consensus 216 ~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~ 251 (330)
T 4e5n_A 216 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALE 251 (330)
T ss_dssp TCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHH
Confidence 444 3455667899999988654 34456666554
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-11 Score=103.38 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=77.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~~~ 86 (272)
...++|||||+|+||+++++.+...|+ +|.+| +|++++.+ .+....+.++++++||+|++++|. ...+.
T Consensus 120 l~g~tvGIIGlG~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~-----~~~~~~~l~ell~~aDiV~l~~P~t~~t~~ 189 (290)
T 3gvx_A 120 LYGKALGILGYGGIGRRVAHLAKAFGM----RVIAY-TRSSVDQN-----VDVISESPADLFRQSDFVLIAIPLTDKTRG 189 (290)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTC----EEEEE-CSSCCCTT-----CSEECSSHHHHHHHCSEEEECCCCCTTTTT
T ss_pred eecchheeeccCchhHHHHHHHHhhCc----EEEEE-eccccccc-----cccccCChHHHhhccCeEEEEeeccccchh
Confidence 456899999999999999999999999 99999 99875432 244556888999999999999985 34444
Q ss_pred HH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 87 VA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 87 v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
++ .+..+.++++.++|+++.|- ..+.+.+.+.
T Consensus 190 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~ 224 (290)
T 3gvx_A 190 MVNSRLLANARKNLTIVNVARADVVSKPDMIGFLK 224 (290)
T ss_dssp CBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred hhhHHHHhhhhcCceEEEeehhcccCCcchhhhhh
Confidence 44 34556688999999986543 3455655553
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.6e-11 Score=102.02 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=81.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
.....++|||||+|+||+++|+.+...|+ +|.+| +|++++ ....+.|+.. .+.++++++||+|++++|.. ..
T Consensus 161 ~~l~g~tvgIIGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t 233 (335)
T 2g76_A 161 TELNGKTLGILGLGRIGREVATRMQSFGM----KTIGY-DPIISP-EVSASFGVQQ-LPLEEIWPLCDFITVHTPLLPST 233 (335)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSSSCH-HHHHHTTCEE-CCHHHHGGGCSEEEECCCCCTTT
T ss_pred cCCCcCEEEEEeECHHHHHHHHHHHHCCC----EEEEE-CCCcch-hhhhhcCcee-CCHHHHHhcCCEEEEecCCCHHH
Confidence 34566899999999999999999999998 99999 998765 3445577764 47889999999999999865 35
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
+.++ .+..+.++++.++|+++.|- ..+.+.+.+.
T Consensus 234 ~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~ 270 (335)
T 2g76_A 234 TGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQ 270 (335)
T ss_dssp TTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred HHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHH
Confidence 5555 34556678999999887653 3345555554
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.1e-11 Score=102.97 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=79.8
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
.....++|||||+|+||+++|+.+...|+ +|.+| +|++.+.+.. .|+....+.++++++||+|++++|.. ..
T Consensus 169 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~~~--~g~~~~~~l~ell~~sDvV~l~~Plt~~T 241 (345)
T 4g2n_A 169 MGLTGRRLGIFGMGRIGRAIATRARGFGL----AIHYH-NRTRLSHALE--EGAIYHDTLDSLLGASDIFLIAAPGRPEL 241 (345)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHTTTC----EEEEE-CSSCCCHHHH--TTCEECSSHHHHHHTCSEEEECSCCCGGG
T ss_pred cccCCCEEEEEEeChhHHHHHHHHHHCCC----EEEEE-CCCCcchhhh--cCCeEeCCHHHHHhhCCEEEEecCCCHHH
Confidence 34456899999999999999999999999 99999 9986443322 27776678899999999999999853 34
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
..++ .+....++++.++|+++.| +..+.+.+.+.
T Consensus 242 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 278 (345)
T 4g2n_A 242 KGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALR 278 (345)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHH
Confidence 4444 3344567899999988654 34456666554
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-10 Score=98.10 Aligned_cols=95 Identities=22% Similarity=0.311 Sum_probs=72.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c---------Ccee-ecCchhhhccCCEEEEee
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I---------GVKV-LSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~---------g~~~-~~~~~~~~~~aDivil~v 79 (272)
|||+|||+|.||++++..|.++|. ..+|++| +|++++++.+.. . .+.+ ..+. +.++++|+||+|+
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~--~~~V~l~-d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav 77 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGV--ADDYVFI-DANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTL 77 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC--CSEEEEE-CSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--CCEEEEE-cCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEec
Confidence 799999999999999999999982 1299999 999988766543 1 2344 4555 6788999999999
Q ss_pred Cccc--------------------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 80 KPQV--------------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 80 ~~~~--------------------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
++.. +.++++.+.++. ++.+++..+++...
T Consensus 78 ~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~ 127 (309)
T 1hyh_A 78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDV 127 (309)
T ss_dssp SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHH
T ss_pred CCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcHHH
Confidence 8654 467777777764 67777777776554
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=7.6e-11 Score=98.58 Aligned_cols=115 Identities=12% Similarity=0.132 Sum_probs=81.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHH--
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVK-- 85 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~-- 85 (272)
.. +|+|||+|.||.+++..|.+.|+ +|++| +|++++++.+.+ .+.. ..+..++ +++|+||+|+|+....
T Consensus 116 ~~-~v~iiG~G~~g~~~a~~l~~~g~----~v~v~-~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~ 187 (263)
T 2d5c_A 116 KG-PALVLGAGGAGRAVAFALREAGL----EVWVW-NRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPS 187 (263)
T ss_dssp CS-CEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTT
T ss_pred CC-eEEEECCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCC
Confidence 45 89999999999999999999998 89999 999998887766 4655 4567777 8999999999877432
Q ss_pred -HHHHHhchhcCCCCEEEEEcCCCCHH-HHHHHhCCCCEEEEccCchhhhcC
Q 024121 86 -DVAMQIRPLLSRKKLLVSVAAGVKLK-DLQEWTGHSRFIRVMPNTPSAVGE 135 (272)
Q Consensus 86 -~v~~~l~~~l~~~~~iis~~~~~~~~-~l~~~~~~~~~~~~~p~~~~~~~~ 135 (272)
..+. .+.++++++++++..+ +.+ .+.+.... ..++++++.+..+.+
T Consensus 188 ~~~l~--~~~l~~g~~viD~~~~-p~~t~l~~~a~~-~g~~~v~g~~mlv~q 235 (263)
T 2d5c_A 188 ASPLP--AELFPEEGAAVDLVYR-PLWTRFLREAKA-KGLKVQTGLPMLAWQ 235 (263)
T ss_dssp CCSSC--GGGSCSSSEEEESCCS-SSSCHHHHHHHH-TTCEEECSHHHHHHH
T ss_pred CCCCC--HHHcCCCCEEEEeecC-CcccHHHHHHHH-CcCEEECcHHHHHHH
Confidence 2221 3456788999987543 221 23333321 123556776665544
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=99.10 E-value=8.5e-10 Score=82.65 Aligned_cols=96 Identities=15% Similarity=0.207 Sum_probs=69.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceee-cCc---h----hhhccCCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL-SDN---N----AVVEYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~-~~~---~----~~~~~aDivil~v 79 (272)
+.|+|.|+|+|.+|..++..|.+.|+ +|+++ +|++++.+.+.+ .++... .+. . ..+.++|+||+|+
T Consensus 3 ~~m~i~IiG~G~iG~~~a~~L~~~g~----~v~~~-d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 77 (140)
T 1lss_A 3 HGMYIIIAGIGRVGYTLAKSLSEKGH----DIVLI-DIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 77 (140)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence 45899999999999999999999999 99999 999998887775 466432 221 1 1256899999999
Q ss_pred CcccHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
|++.....+..+.+.++++++++.. ++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ii~~~-~~~~~ 107 (140)
T 1lss_A 78 GKEEVNLMSSLLAKSYGINKTIARI-SEIEY 107 (140)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEEC-SSTTH
T ss_pred CCchHHHHHHHHHHHcCCCEEEEEe-cCHhH
Confidence 8876655555555556667666643 44443
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=5.3e-11 Score=101.37 Aligned_cols=101 Identities=11% Similarity=0.141 Sum_probs=77.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|+||+++|+++...|+ +|.+| +|+++ +. +.....+.++++++||+|++++|.. ..+
T Consensus 121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~----~V~~~-dr~~~--~~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~ 189 (303)
T 1qp8_A 121 LIQGEKVAVLGLGEIGTRVGKILAALGA----QVRGF-SRTPK--EG----PWRFTNSLEEALREARAAVCALPLNKHTR 189 (303)
T ss_dssp CCTTCEEEEESCSTHHHHHHHHHHHTTC----EEEEE-CSSCC--CS----SSCCBSCSHHHHTTCSEEEECCCCSTTTT
T ss_pred CCCCCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCCcc--cc----CcccCCCHHHHHhhCCEEEEeCcCchHHH
Confidence 3566899999999999999999999999 99999 99875 11 3434457889999999999999875 455
Q ss_pred HHHH-HhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.++. +..+.++++.++|+++.|- ..+.+.+.+.
T Consensus 190 ~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~ 225 (303)
T 1qp8_A 190 GLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILK 225 (303)
T ss_dssp TCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHH
Confidence 5553 4556788999999986653 3345655553
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.9e-10 Score=94.66 Aligned_cols=115 Identities=17% Similarity=0.278 Sum_probs=82.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee--cCchhhhccCCEEEEeeCcccH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~aDivil~v~~~~~ 84 (272)
....++|+|||+|.||..+++.+...|. +|++| +|++++.+.+.+.|+... .+..++++++|+|++++|...+
T Consensus 152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i 226 (293)
T 3d4o_A 152 TIHGANVAVLGLGRVGMSVARKFAALGA----KVKVG-ARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALVV 226 (293)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSCCB
T ss_pred CCCCCEEEEEeeCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChHHh
Confidence 4467899999999999999999999998 99999 999988776666777643 4567778999999999997654
Q ss_pred H-HHHHHhchhcCCCCEEEEEcCC---CCHHHHHHHhCCCCEEEEccCchhhh
Q 024121 85 K-DVAMQIRPLLSRKKLLVSVAAG---VKLKDLQEWTGHSRFIRVMPNTPSAV 133 (272)
Q Consensus 85 ~-~v~~~l~~~l~~~~~iis~~~~---~~~~~l~~~~~~~~~~~~~p~~~~~~ 133 (272)
. +.+ ..++++.++|++..+ +..+. .+..+ . .+..+|+.|..+
T Consensus 227 ~~~~l----~~mk~~~~lin~ar~~~~~~~~~-a~~~G-v-~~~~~~~l~~~v 272 (293)
T 3d4o_A 227 TANVL----AEMPSHTFVIDLASKPGGTDFRY-AEKRG-I-KALLVPGLPGIV 272 (293)
T ss_dssp CHHHH----HHSCTTCEEEECSSTTCSBCHHH-HHHHT-C-EEEECCCHHHHH
T ss_pred CHHHH----HhcCCCCEEEEecCCCCCCCHHH-HHHCC-C-EEEECCCCCccc
Confidence 2 233 345788999988642 22311 12222 2 333467777654
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.08 E-value=3e-10 Score=98.76 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=79.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|+||+++|+.+...|+ +|.+| +|++ +.+...+.|+.. .+.++++++||+|++++|.. ..+
T Consensus 173 ~l~gktvGIIGlG~IG~~vA~~l~~fG~----~V~~~-d~~~-~~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~ 245 (365)
T 4hy3_A 173 LIAGSEIGIVGFGDLGKALRRVLSGFRA----RIRVF-DPWL-PRSMLEENGVEP-ASLEDVLTKSDFIFVVAAVTSENK 245 (365)
T ss_dssp CSSSSEEEEECCSHHHHHHHHHHTTSCC----EEEEE-CSSS-CHHHHHHTTCEE-CCHHHHHHSCSEEEECSCSSCC--
T ss_pred ccCCCEEEEecCCcccHHHHHhhhhCCC----EEEEE-CCCC-CHHHHhhcCeee-CCHHHHHhcCCEEEEcCcCCHHHH
Confidence 3456899999999999999999999999 99999 9985 334445577765 47899999999999999854 455
Q ss_pred HHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 86 ~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
.++ .+....++++.++|+++-| +..+.+.+.+.
T Consensus 246 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 281 (365)
T 4hy3_A 246 RFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVS 281 (365)
T ss_dssp -CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHH
T ss_pred hhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHH
Confidence 555 3455667899999988654 34556666654
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.1e-11 Score=100.99 Aligned_cols=100 Identities=18% Similarity=0.249 Sum_probs=76.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|+||.++++++...|+ +|++| +|++++.. +. ..+..+++++||+|++++|.. ...
T Consensus 141 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~~~------~~-~~~l~ell~~aDvV~l~~p~~~~t~ 208 (311)
T 2cuk_A 141 DLQGLTLGLVGMGRIGQAVAKRALAFGM----RVVYH-ARTPKPLP------YP-FLSLEELLKEADVVSLHTPLTPETH 208 (311)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCSSS------SC-BCCHHHHHHHCSEEEECCCCCTTTT
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHCCC----EEEEE-CCCCcccc------cc-cCCHHHHHhhCCEEEEeCCCChHHH
Confidence 4566899999999999999999999999 99999 99876542 22 356788899999999999876 455
Q ss_pred HHHH-HhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.++. +..+.++++.++|+++.+- ..+.+.+.+.
T Consensus 209 ~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 209 RLLNRERLFAMKRGAILLNTARGALVDTEALVEALR 244 (311)
T ss_dssp TCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred hhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh
Confidence 5553 3445678999999887653 3345666555
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.2e-11 Score=101.29 Aligned_cols=106 Identities=12% Similarity=0.211 Sum_probs=77.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
.....++|||||+|+||+++|+.+...|+ +|.+| +|+++..+.+.. .....+.++++++||+|++++|.. ..
T Consensus 133 ~~l~gktvGIiGlG~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~lPlt~~t 205 (324)
T 3evt_A 133 STLTGQQLLIYGTGQIGQSLAAKASALGM----HVIGV-NTTGHPADHFHE--TVAFTATADALATANFIVNALPLTPTT 205 (324)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSCCCCTTCSE--EEEGGGCHHHHHHCSEEEECCCCCGGG
T ss_pred ccccCCeEEEECcCHHHHHHHHHHHhCCC----EEEEE-CCCcchhHhHhh--ccccCCHHHHHhhCCEEEEcCCCchHH
Confidence 34556899999999999999999999999 99999 998754332211 122357889999999999999853 44
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
..++ .+....++++.++|+++.| +..+.+.+.+.
T Consensus 206 ~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~ 242 (324)
T 3evt_A 206 HHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALD 242 (324)
T ss_dssp TTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHH
Confidence 4444 3445567899999988654 34556666654
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.04 E-value=9.9e-10 Score=93.55 Aligned_cols=94 Identities=13% Similarity=0.255 Sum_probs=74.7
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee--cCchhhhccCCEEEEeeCccc
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~aDivil~v~~~~ 83 (272)
.....++|+|||+|.||.++++.+...|. +|++| +|++++.+.+.+.|+... .+..++++++|+|++++|+..
T Consensus 153 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~----~V~~~-d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~ 227 (300)
T 2rir_A 153 YTIHGSQVAVLGLGRTGMTIARTFAALGA----NVKVG-ARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSMI 227 (300)
T ss_dssp SCSTTSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSCC
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChhh
Confidence 34567899999999999999999999998 99999 999988777766776542 466788899999999999865
Q ss_pred HHHHHHHhchhcCCCCEEEEEcCC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
+.+ .....++++.++|++..+
T Consensus 228 i~~---~~~~~mk~g~~lin~a~g 248 (300)
T 2rir_A 228 LNQ---TVLSSMTPKTLILDLASR 248 (300)
T ss_dssp BCH---HHHTTSCTTCEEEECSST
T ss_pred hCH---HHHHhCCCCCEEEEEeCC
Confidence 432 123446789999988653
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-10 Score=87.94 Aligned_cols=88 Identities=17% Similarity=0.298 Sum_probs=68.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCce--eecCchhhhccCCEEEEeeCcccHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK--VLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~--~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
.++|+|||+|.||..++..|.+.|+ +|++| +|++++.+.+.+ .+.. ...+..++++++|+||.|+|....
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~----~v~v~-~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~~-- 93 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQY----KVTVA-GRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKTP-- 93 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTC----EEEEE-ESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSSC--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCCc--
Confidence 5799999999999999999999888 89999 999999888765 5654 345667888999999999986531
Q ss_pred HHHHhchhcCCCCEEEEEcC
Q 024121 87 VAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~ 106 (272)
++. ...++++.+++++..
T Consensus 94 ~~~--~~~l~~g~~vid~~~ 111 (144)
T 3oj0_A 94 IVE--ERSLMPGKLFIDLGN 111 (144)
T ss_dssp SBC--GGGCCTTCEEEECCS
T ss_pred Eee--HHHcCCCCEEEEccC
Confidence 111 134567888887643
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=93.69 Aligned_cols=101 Identities=11% Similarity=0.147 Sum_probs=72.8
Q ss_pred CCCCCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCc
Q 024121 6 IPAESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~ 81 (272)
++|+++||||||+|.||.. ++..|.+. ++ ++. ++ +|++++++.+.+ .|+..+.+.++++++.|+|++|+|+
T Consensus 2 ~~M~~~~igiIG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~ 76 (308)
T 3uuw_A 2 NAMKNIKMGMIGLGSIAQKAYLPILTKSERF----EFVGAF-TPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSST 76 (308)
T ss_dssp ---CCCEEEEECCSHHHHHHTHHHHTSCSSS----EEEEEE-CSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCG
T ss_pred CccccCcEEEEecCHHHHHHHHHHHHhCCCe----EEEEEE-CCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCc
Confidence 3567789999999999996 88888763 44 666 77 999999988876 6776678889998899999999999
Q ss_pred ccHHHHHHHhchhcCCCCEEE-EEcCCCCHHHHH
Q 024121 82 QVVKDVAMQIRPLLSRKKLLV-SVAAGVKLKDLQ 114 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~ii-s~~~~~~~~~l~ 114 (272)
....+++.... ..|+.|+ .-.-+.+.+..+
T Consensus 77 ~~h~~~~~~al---~~gk~vl~EKP~~~~~~~~~ 107 (308)
T 3uuw_A 77 ETHYEIIKILL---NLGVHVYVDKPLASTVSQGE 107 (308)
T ss_dssp GGHHHHHHHHH---HTTCEEEECSSSSSSHHHHH
T ss_pred HhHHHHHHHHH---HCCCcEEEcCCCCCCHHHHH
Confidence 88777665543 3455444 212234444443
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.3e-11 Score=98.28 Aligned_cols=121 Identities=13% Similarity=0.102 Sum_probs=87.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHH--
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVK-- 85 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~-- 85 (272)
.. +++|||+|.||.+++..|.+.|. .+|+++ +|++++++++.+ .+.....+..+.+.++|+||.|+|.....
T Consensus 108 ~~-~vliiGaGg~a~ai~~~L~~~G~---~~I~v~-nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~ 182 (253)
T 3u62_A 108 KE-PVVVVGAGGAARAVIYALLQMGV---KDIWVV-NRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEE 182 (253)
T ss_dssp CS-SEEEECCSHHHHHHHHHHHHTTC---CCEEEE-ESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCC
T ss_pred CC-eEEEECcHHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCC
Confidence 45 89999999999999999999986 379999 999999887765 33333455667788999999999743111
Q ss_pred HHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceE
Q 024121 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATV 139 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~ 139 (272)
..+. ...++++++++|+..+ +...+++... +++ +++|+.+..+.++...
T Consensus 183 ~~i~--~~~l~~~~~V~Divy~-~T~ll~~A~~~G~~--~~~~Gl~MLv~Qa~~a 232 (253)
T 3u62_A 183 LPVS--DDSLKNLSLVYDVIYF-DTPLVVKARKLGVK--HIIKGNLMFYYQAMEN 232 (253)
T ss_dssp CSCC--HHHHTTCSEEEECSSS-CCHHHHHHHHHTCS--EEECTHHHHHHHHHHH
T ss_pred CCCC--HHHhCcCCEEEEeeCC-CcHHHHHHHHCCCc--EEECCHHHHHHHHHHH
Confidence 1111 1235688999999877 6666655443 333 4789999888776543
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.03 E-value=4.5e-11 Score=102.21 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=76.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee---ecCchhhhccCCEEEEeeCcc-
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV---LSDNNAVVEYSDVVVFSVKPQ- 82 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~---~~~~~~~~~~aDivil~v~~~- 82 (272)
....++|||||+|+||+++|+.+...|+ +|.+| +|+++..+ ++.. ..+.++++++||+|++++|..
T Consensus 136 ~l~g~tvGIiG~G~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~-----~~~~~~~~~~l~ell~~aDiV~l~~Plt~ 205 (315)
T 3pp8_A 136 TREEFSVGIMGAGVLGAKVAESLQAWGF----PLRCW-SRSRKSWP-----GVESYVGREELRAFLNQTRVLINLLPNTA 205 (315)
T ss_dssp CSTTCCEEEECCSHHHHHHHHHHHTTTC----CEEEE-ESSCCCCT-----TCEEEESHHHHHHHHHTCSEEEECCCCCG
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-cCCchhhh-----hhhhhcccCCHHHHHhhCCEEEEecCCch
Confidence 4456899999999999999999999999 99999 99876432 2221 146788999999999999853
Q ss_pred cHHHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 83 VVKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 83 ~~~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
..+.++ .+....++++.++|+++.| +..+.+.+.+.
T Consensus 206 ~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~ 244 (315)
T 3pp8_A 206 QTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALD 244 (315)
T ss_dssp GGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred hhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHH
Confidence 455555 4455668899999988654 34456666554
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.8e-10 Score=98.27 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=77.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|+||+++++.+...|+ +|.+| +|++++. +.+ .+....+..+++++||+|++++|.. ..+
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~~--~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~ 214 (333)
T 1j4a_A 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGA----KVITY-DIFRNPE--LEK-KGYYVDSLDDLYKQADVISLHVPDVPANV 214 (333)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCHH--HHH-TTCBCSCHHHHHHHCSEEEECSCCCGGGT
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCCcchh--HHh-hCeecCCHHHHHhhCCEEEEcCCCcHHHH
Confidence 3456899999999999999999999999 99999 9987654 222 2444447788899999999999854 344
Q ss_pred HHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 86 ~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
.++ ....+.++++.++|+++.| +..+.+.+.+.
T Consensus 215 ~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~ 250 (333)
T 1j4a_A 215 HMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD 250 (333)
T ss_dssp TCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 444 2344557889999988654 34456666664
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=3e-09 Score=91.33 Aligned_cols=96 Identities=18% Similarity=0.299 Sum_probs=71.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---c------CceeecCchhhhccCCEEEEeeCc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I------GVKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~------g~~~~~~~~~~~~~aDivil~v~~ 81 (272)
|||+|||+|.||++++..|.+.|+ ..+|++| |+++++++.+.. . ...+..+..+.++++|+||+|++.
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~--~~~V~l~-D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~aDvViiav~~ 77 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGF--AREMVLI-DVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGV 77 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC--CSEEEEE-CSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--CCeEEEE-eCChHHHHHHHHHHHhhhhhcCCcEEEeCCHHHhCCCCEEEEccCC
Confidence 689999999999999999999886 3479999 999887766542 1 223322234668899999999975
Q ss_pred cc----------------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 82 QV----------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 82 ~~----------------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
.. +.++++++.++ .|+..++..++++..
T Consensus 78 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~ii~~tNp~~~ 121 (319)
T 1a5z_A 78 PQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVTNPVDV 121 (319)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCcHHH
Confidence 32 46777777776 477777777776554
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-10 Score=100.06 Aligned_cols=105 Identities=18% Similarity=0.173 Sum_probs=77.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|+||+++|+.+...|+ +|.+| +|+++....+ .+.....+.++++++||+|++++|.. ..+
T Consensus 137 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~~~--~~~~~~~~l~ell~~aDvV~l~lPlt~~T~ 209 (324)
T 3hg7_A 137 GLKGRTLLILGTGSIGQHIAHTGKHFGM----KVLGV-SRSGRERAGF--DQVYQLPALNKMLAQADVIVSVLPATRETH 209 (324)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCCCTTC--SEEECGGGHHHHHHTCSEEEECCCCCSSST
T ss_pred ccccceEEEEEECHHHHHHHHHHHhCCC----EEEEE-cCChHHhhhh--hcccccCCHHHHHhhCCEEEEeCCCCHHHH
Confidence 4456899999999999999999999999 99999 9987433211 11222457789999999999999853 444
Q ss_pred HHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 86 DVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 86 ~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.++ .+....++++.++|+++.|- ..+.+.+.+.
T Consensus 210 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 245 (324)
T 3hg7_A 210 HLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALR 245 (324)
T ss_dssp TSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHH
Confidence 444 34556678999999986553 4455666554
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.3e-09 Score=92.97 Aligned_cols=79 Identities=14% Similarity=0.246 Sum_probs=66.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeecCchhhhc--cCCEEEEeeCccc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQV 83 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDivil~v~~~~ 83 (272)
+++||||||+|.||..++..|.+. ++ ++. ++ +|++++++.+.+ .|+..+.+.+++++ +.|+|++|+|+..
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~ 77 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAANPDL----ELVVIA-DPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTST 77 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTTE----EEEEEE-CSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGG
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCc----EEEEEE-CCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchh
Confidence 457999999999999999999886 44 665 67 999999888776 68888889999988 8999999999987
Q ss_pred HHHHHHHhc
Q 024121 84 VKDVAMQIR 92 (272)
Q Consensus 84 ~~~v~~~l~ 92 (272)
..+++....
T Consensus 78 h~~~~~~al 86 (344)
T 3euw_A 78 HVDLITRAV 86 (344)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 766665543
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=99.01 E-value=4.9e-10 Score=84.26 Aligned_cols=95 Identities=23% Similarity=0.318 Sum_probs=72.4
Q ss_pred CCCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccH
Q 024121 9 ESFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~ 84 (272)
+..+|+|||+ |+||..++++|.+.|| +|+.+ |++.+.. .|+.+..+..|+.+..|++++++|++.+
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~----~V~~v-np~~~~i-----~G~~~~~s~~el~~~vDlvii~vp~~~v 82 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSKGF----EVLPV-NPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPPKVG 82 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHTTC----EEEEE-CTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCHHHH
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHCCC----EEEEe-CCCCCeE-----CCeeecCCHHHhCCCCCEEEEEeCHHHH
Confidence 4578999999 9999999999999999 87777 6654222 5888888899988899999999999999
Q ss_pred HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHH
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW 116 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~ 116 (272)
.++++++.. ...+.+|+. +++. .+++.+.
T Consensus 83 ~~v~~~~~~-~g~~~i~~~-~~~~-~~~l~~~ 111 (138)
T 1y81_A 83 LQVAKEAVE-AGFKKLWFQ-PGAE-SEEIRRF 111 (138)
T ss_dssp HHHHHHHHH-TTCCEEEEC-TTSC-CHHHHHH
T ss_pred HHHHHHHHH-cCCCEEEEc-CccH-HHHHHHH
Confidence 999988665 345555554 3444 3344333
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.6e-10 Score=98.57 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=78.7
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
.....++|||||+|+||+.+|+.+...|+ +|.+| ||+++.. ..++....+.++++++||+|++++|.. ..
T Consensus 141 ~el~gktlGiIGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~~~----~~~~~~~~~l~ell~~aDvV~l~~P~t~~t 211 (404)
T 1sc6_A 141 FEARGKKLGIIGYGHIGTQLGILAESLGM----YVYFY-DIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPST 211 (404)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTTT
T ss_pred cccCCCEEEEEeECHHHHHHHHHHHHCCC----EEEEE-cCCchhc----cCCceecCCHHHHHhcCCEEEEccCCChHH
Confidence 34567899999999999999999999999 99999 9976431 123555568889999999999999864 44
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
+.++ .+....++++.++|+++.|- ..+.+.+.+.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~ 248 (404)
T 1sc6_A 212 KNMMGAKEISLMKPGSLLINASRGTVVDIPALADALA 248 (404)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred HHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHH
Confidence 4444 33445678999999987654 3456666664
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-09 Score=91.48 Aligned_cols=113 Identities=17% Similarity=0.296 Sum_probs=78.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH--HHH-Hc------Cceee-cCchhhhccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD--AFE-SI------GVKVL-SDNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~--~l~-~~------g~~~~-~~~~~~~~~aDivil~ 78 (272)
+.|||+|||+|.||++++..|...|+. .+|+++ +|++++++ .+. .. ...+. .+..+.++++|+||++
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~--~~V~l~-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~ 82 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIA--REIVLE-DIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVIT 82 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCC--SEEEEE-CSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC--CEEEEE-eCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEEC
Confidence 458999999999999999999998863 379999 99987765 221 12 22222 2134567899999999
Q ss_pred eCccc----------------HHHHHHHhchhcCCCCEEEEEcCCCCHH-HHHH---HhCCCCEEEE
Q 024121 79 VKPQV----------------VKDVAMQIRPLLSRKKLLVSVAAGVKLK-DLQE---WTGHSRFIRV 125 (272)
Q Consensus 79 v~~~~----------------~~~v~~~l~~~l~~~~~iis~~~~~~~~-~l~~---~~~~~~~~~~ 125 (272)
++... +.+++.++.++ .++.+|++.++++... .+.. .++..++++.
T Consensus 83 v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~~~~~~~~~~~~~~~vig~ 148 (319)
T 1lld_A 83 AGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLTGLPENQIFGS 148 (319)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHHHHHHHHhcCCCHHHEeec
Confidence 95332 23677777775 6888999888887663 3333 2444467654
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-09 Score=82.34 Aligned_cols=100 Identities=12% Similarity=0.093 Sum_probs=70.5
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH-HcCceee-cCc------hhh-hccCCE
Q 024121 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-SIGVKVL-SDN------NAV-VEYSDV 74 (272)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-~~g~~~~-~~~------~~~-~~~aDi 74 (272)
+|.....++|.|+|+|.+|..+++.|.+.|+ +|+++ +|++++.+.+. +.|.... .+. .++ +.++|+
T Consensus 13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~----~V~vi-d~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~ 87 (155)
T 2g1u_A 13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGH----SVVVV-DKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADM 87 (155)
T ss_dssp ----CCCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSE
T ss_pred hhcccCCCcEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCE
Confidence 5666677899999999999999999999999 99999 99999887776 5565432 221 122 568999
Q ss_pred EEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 75 vil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
||+|++++.....+..+...+.+...++...++.
T Consensus 88 Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~ 121 (155)
T 2g1u_A 88 VFAFTNDDSTNFFISMNARYMFNVENVIARVYDP 121 (155)
T ss_dssp EEECSSCHHHHHHHHHHHHHTSCCSEEEEECSSG
T ss_pred EEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 9999988766555544444434555666555543
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.8e-10 Score=97.45 Aligned_cols=102 Identities=15% Similarity=0.212 Sum_probs=75.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~ 86 (272)
...++|||||+|+||+++|+.+...|+ +|.+| +|+++.. .+.++.. .+.++++++||+|++++|.. ....
T Consensus 146 l~gktvgIiGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~~~---~~~~~~~-~~l~ell~~aDvV~l~~Plt~~t~~ 216 (343)
T 2yq5_A 146 IYNLTVGLIGVGHIGSAVAEIFSAMGA----KVIAY-DVAYNPE---FEPFLTY-TDFDTVLKEADIVSLHTPLFPSTEN 216 (343)
T ss_dssp GGGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCGG---GTTTCEE-CCHHHHHHHCSEEEECCCCCTTTTT
T ss_pred cCCCeEEEEecCHHHHHHHHHHhhCCC----EEEEE-CCChhhh---hhccccc-cCHHHHHhcCCEEEEcCCCCHHHHH
Confidence 356899999999999999999999999 99999 9987541 1233444 37889999999999999853 3333
Q ss_pred HH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 87 VA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 87 v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
++ .+....++++.++|+++.| +..+.+.+.+.
T Consensus 217 li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~ 251 (343)
T 2yq5_A 217 MIGEKQLKEMKKSAYLINCARGELVDTGALIKALQ 251 (343)
T ss_dssp CBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHH
Confidence 33 2344557899999988654 34456665553
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.2e-09 Score=92.46 Aligned_cols=99 Identities=19% Similarity=0.214 Sum_probs=73.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeecCchhhh--ccCCEEEEeeCcc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVV--EYSDVVVFSVKPQ 82 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~--~~aDivil~v~~~ 82 (272)
++.+||||||+|.||..++..|.+. ++ ++. ++ +|++++++.+.+ .|+..+.+.++++ .+.|+|++|+|+.
T Consensus 3 ~~~~~vgiiG~G~~g~~~~~~l~~~~~~----~lvav~-d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~ 77 (354)
T 3db2_A 3 YNPVGVAAIGLGRWAYVMADAYTKSEKL----KLVTCY-SRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPND 77 (354)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSSE----EEEEEE-CSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTT
T ss_pred CCcceEEEEccCHHHHHHHHHHHhCCCc----EEEEEE-CCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChH
Confidence 4567999999999999999999876 55 654 77 999999888766 6887788889988 5699999999988
Q ss_pred cHHHHHHHhchhcCCCCEEE-EEcCCCCHHHHH
Q 024121 83 VVKDVAMQIRPLLSRKKLLV-SVAAGVKLKDLQ 114 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~ii-s~~~~~~~~~l~ 114 (272)
...+++.... ..++.|+ .-.-+.+.+..+
T Consensus 78 ~h~~~~~~al---~~gk~vl~EKP~~~~~~~~~ 107 (354)
T 3db2_A 78 KHAEVIEQCA---RSGKHIYVEKPISVSLDHAQ 107 (354)
T ss_dssp SHHHHHHHHH---HTTCEEEEESSSCSSHHHHH
T ss_pred HHHHHHHHHH---HcCCEEEEccCCCCCHHHHH
Confidence 7666654433 3455444 322234444443
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-09 Score=94.63 Aligned_cols=109 Identities=10% Similarity=0.084 Sum_probs=78.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-H
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~ 84 (272)
.....++|||||+|+||+.+++.+...|+ +|.+| +|++++. + +..+.. .+.++++++||+|++++|... .
T Consensus 141 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~~--~-~~~~~~-~~l~ell~~aDvV~~~~P~~~~t 211 (333)
T 1dxy_A 141 KELGQQTVGVMGTGHIGQVAIKLFKGFGA----KVIAY-DPYPMKG--D-HPDFDY-VSLEDLFKQSDVIDLHVPGIEQN 211 (333)
T ss_dssp CCGGGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCSS--C-CTTCEE-CCHHHHHHHCSEEEECCCCCGGG
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCcchh--h-Hhcccc-CCHHHHHhcCCEEEEcCCCchhH
Confidence 34556899999999999999999999999 99999 9987543 1 122333 477888999999999998643 4
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhCCCCEE
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTGHSRFI 123 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~~~~~~ 123 (272)
+.++ .+..+.++++.++|+++.|- ..+.+.+.+...++.
T Consensus 212 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~ 253 (333)
T 1dxy_A 212 THIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLA 253 (333)
T ss_dssp TTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEE
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCcc
Confidence 4444 33445678899999886553 445666666533333
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.96 E-value=9.6e-10 Score=96.90 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=76.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
.....++|||||+|+||+.+|+.+...|+ +|.+| ||++... ..+.....+.++++++||+|++++|.. ..
T Consensus 152 ~el~gktvGIIGlG~IG~~vA~~l~~~G~----~V~~y-d~~~~~~----~~~~~~~~sl~ell~~aDvV~lhvPlt~~T 222 (416)
T 3k5p_A 152 REVRGKTLGIVGYGNIGSQVGNLAESLGM----TVRYY-DTSDKLQ----YGNVKPAASLDELLKTSDVVSLHVPSSKST 222 (416)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CTTCCCC----BTTBEECSSHHHHHHHCSEEEECCCC----
T ss_pred ccCCCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-CCcchhc----ccCcEecCCHHHHHhhCCEEEEeCCCCHHH
Confidence 34556899999999999999999999999 99999 9875321 124455578899999999999999863 34
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
+.++ .+....++++.++|+++.|- ..+.+.+.+.
T Consensus 223 ~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~ 259 (416)
T 3k5p_A 223 SKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQ 259 (416)
T ss_dssp -CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred hhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHH
Confidence 4444 23445578999999987553 3456666664
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.1e-09 Score=82.98 Aligned_cols=93 Identities=12% Similarity=0.146 Sum_probs=67.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCc------hhh--hccCCEEEE
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN------NAV--VEYSDVVVF 77 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~------~~~--~~~aDivil 77 (272)
...++|.|+|+|.||..+++.|.+. |+ +|+++ ++++++.+.+.+.|+.+. .+. .++ +.++|+||+
T Consensus 37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~----~V~vi-d~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~ 111 (183)
T 3c85_A 37 PGHAQVLILGMGRIGTGAYDELRARYGK----ISLGI-EIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLL 111 (183)
T ss_dssp CTTCSEEEECCSHHHHHHHHHHHHHHCS----CEEEE-ESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEE
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhccCC----eEEEE-ECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEE
Confidence 3457899999999999999999999 99 99999 999999988887776532 121 222 568999999
Q ss_pred eeCcccH-HHHHHHhchhcCCCCEEEEEcC
Q 024121 78 SVKPQVV-KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 78 ~v~~~~~-~~v~~~l~~~l~~~~~iis~~~ 106 (272)
|+|++.. ..++..+.. +.+...++....
T Consensus 112 ~~~~~~~~~~~~~~~~~-~~~~~~ii~~~~ 140 (183)
T 3c85_A 112 AMPHHQGNQTALEQLQR-RNYKGQIAAIAE 140 (183)
T ss_dssp CCSSHHHHHHHHHHHHH-TTCCSEEEEEES
T ss_pred eCCChHHHHHHHHHHHH-HCCCCEEEEEEC
Confidence 9987653 333333333 445555554433
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.4e-09 Score=91.04 Aligned_cols=86 Identities=9% Similarity=0.174 Sum_probs=68.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeecCchhhhc--cCCEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~--g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDivil~v~~~ 82 (272)
+++||||||+|.||..++..|.+. ++ ++. ++ ++++++++.+.+ .|+..+.+.+++++ +.|+|++|+|+.
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~----~lvav~-d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 86 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRA----ELIDVC-DIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSG 86 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTE----EEEEEE-CSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGG
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCe----EEEEEE-cCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcH
Confidence 457999999999999999999986 55 655 77 999999888776 68888889999887 799999999998
Q ss_pred cHHHHHHHhchhcCCCCEEE
Q 024121 83 VVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~ii 102 (272)
...+++.... ..++.|+
T Consensus 87 ~h~~~~~~al---~~gk~v~ 103 (354)
T 3q2i_A 87 LHPTQSIECS---EAGFHVM 103 (354)
T ss_dssp GHHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHH---HCCCCEE
Confidence 7666655443 3455554
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-09 Score=82.29 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=73.0
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH--HHHHHHHHcCceeecCchhhhccCCEEEEeeCccc
Q 024121 10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 10 ~~~IgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~ 83 (272)
..+|+|||+ |+||..++++|.+.|| +|+.+ |++. +.. .|+.+..+..++....|++++|+|++.
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~----~v~~v-np~~~g~~i-----~G~~~~~sl~el~~~~Dlvii~vp~~~ 82 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGY----HVIPV-SPKVAGKTL-----LGQQGYATLADVPEKVDMVDVFRNSEA 82 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTC----CEEEE-CSSSTTSEE-----TTEECCSSTTTCSSCCSEEECCSCSTH
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCC----EEEEe-CCccccccc-----CCeeccCCHHHcCCCCCEEEEEeCHHH
Confidence 467999999 8999999999999999 88877 7664 222 588888888888889999999999999
Q ss_pred HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHh
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~ 117 (272)
+.++++++.. ...+.+|+. .++. .+.+.+..
T Consensus 83 v~~v~~~~~~-~g~~~i~i~-~~~~-~~~l~~~a 113 (145)
T 2duw_A 83 AWGVAQEAIA-IGAKTLWLQ-LGVI-NEQAAVLA 113 (145)
T ss_dssp HHHHHHHHHH-HTCCEEECC-TTCC-CHHHHHHH
T ss_pred HHHHHHHHHH-cCCCEEEEc-CChH-HHHHHHHH
Confidence 9999988765 345556664 3443 44444444
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.9e-09 Score=91.19 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=73.1
Q ss_pred CCCCCCCeEEEEcccHHHH-HHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeecCchhhhc--cCCEEEEe
Q 024121 5 PIPAESFILGFIGAGKMAE-SIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFS 78 (272)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~-~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDivil~ 78 (272)
|.+|+.+||||||+|.||. .++..|.+. ++ +|. ++ +|++++++.+.+ .|+....+.+++++ +.|+|++|
T Consensus 22 ~~~m~~~rigiIG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~ 96 (350)
T 3rc1_A 22 PANANPIRVGVIGCADIAWRRALPALEAEPLT----EVTAIA-SRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVP 96 (350)
T ss_dssp ----CCEEEEEESCCHHHHHTHHHHHHHCTTE----EEEEEE-ESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEEC
T ss_pred CCCCCceEEEEEcCcHHHHHHHHHHHHhCCCe----EEEEEE-cCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEC
Confidence 4455668999999999998 789999886 45 665 77 999999888776 68888888899886 58999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEE-EEcCCCCHHHHHH
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLV-SVAAGVKLKDLQE 115 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~ii-s~~~~~~~~~l~~ 115 (272)
+|+....+++.... ..|+-|+ .-.-+.+.++.++
T Consensus 97 tp~~~h~~~~~~al---~aGk~Vl~EKP~a~~~~ea~~ 131 (350)
T 3rc1_A 97 LPAVLHAEWIDRAL---RAGKHVLAEKPLTTDRPQAER 131 (350)
T ss_dssp CCGGGHHHHHHHHH---HTTCEEEEESSSCSSHHHHHH
T ss_pred CCcHHHHHHHHHHH---HCCCcEEEeCCCCCCHHHHHH
Confidence 99887766665443 3455444 3222344554443
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.5e-09 Score=76.22 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=68.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHHcCceee-------cCchhhhccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDivil~v~ 80 (272)
++++|.|+|+|.||..++..|.+.| + +|+++ +|++++.+.+...++... .+..+.++++|+||.|+|
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~----~v~~~-~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~ 78 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNY----SVTVA-DHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAP 78 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSE----EEEEE-ESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSC
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCc----eEEEE-eCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCC
Confidence 3578999999999999999999999 8 99999 999999888776555432 122345678999999998
Q ss_pred cccHHHHHHHhchhcCCCCEEEEEcCC
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
......++.... ..+..+++.++.
T Consensus 79 ~~~~~~~~~~~~---~~g~~~~~~~~~ 102 (118)
T 3ic5_A 79 FFLTPIIAKAAK---AAGAHYFDLTED 102 (118)
T ss_dssp GGGHHHHHHHHH---HTTCEEECCCSC
T ss_pred chhhHHHHHHHH---HhCCCEEEecCc
Confidence 776666665443 345666665443
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.3e-09 Score=89.74 Aligned_cols=96 Identities=18% Similarity=0.290 Sum_probs=71.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeecCchhhhc--cCCEEEEeeCcccH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQVV 84 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDivil~v~~~~~ 84 (272)
++||||||+|.||..++..|.+. ++ ++. ++ +|++++++.+.+ .|+. ..+.+++++ +.|+|++|+|+...
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h 76 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADA----RLVAVA-DAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTH 76 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTE----EEEEEE-CSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGH
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCc----EEEEEE-CCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhH
Confidence 57999999999999999999885 55 665 67 999999888876 6888 788889887 79999999999877
Q ss_pred HHHHHHhchhcCCCCEEE-EEcCCCCHHHHH
Q 024121 85 KDVAMQIRPLLSRKKLLV-SVAAGVKLKDLQ 114 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~ii-s~~~~~~~~~l~ 114 (272)
.+++.... ..++-|+ .-.-+.+.+..+
T Consensus 77 ~~~~~~al---~~gk~v~~EKP~~~~~~~~~ 104 (331)
T 4hkt_A 77 ADLIERFA---RAGKAIFCEKPIDLDAERVR 104 (331)
T ss_dssp HHHHHHHH---HTTCEEEECSCSCSSHHHHH
T ss_pred HHHHHHHH---HcCCcEEEecCCCCCHHHHH
Confidence 66665543 3444444 222234454433
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-09 Score=94.34 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=68.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----C--ceeecCchhhhccCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----G--VKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----g--~~~~~~~~~~~~~aDivil~v~~ 81 (272)
+.++|+|||+|.||.+++..|.... ...+|.+| ||++++++++.+. | +..+.+..++++++|+|++|+|.
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~--~~~~V~V~-~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps 204 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHL--GIEEIVAY-DTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTAD 204 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHS--CCCEEEEE-CSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCC
T ss_pred cCCeEEEECCcHHHHHHHHHHHHhC--CCcEEEEE-cCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccC
Confidence 5679999999999999999886531 11389999 9999999988772 6 34567888889999999999987
Q ss_pred ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
.....++. ...+++++.|+++
T Consensus 205 ~~~~pvl~--~~~l~~G~~V~~v 225 (350)
T 1x7d_A 205 KAYATIIT--PDMLEPGMHLNAV 225 (350)
T ss_dssp SSEEEEEC--GGGCCTTCEEEEC
T ss_pred CCCCceec--HHHcCCCCEEEEC
Confidence 63222332 1356788877765
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-08 Score=76.39 Aligned_cols=101 Identities=12% Similarity=0.192 Sum_probs=69.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCc--hhh-----hccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NAV-----VEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~--~~~-----~~~aDivil~v~ 80 (272)
++++|.|+|+|.+|..+++.|.+.|+ +|.++ ++++++.+.+.+.+..+. .|. .+. +.++|+||++++
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~----~V~~i-d~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGK----KVLAV-DKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTC----CEEEE-ESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 45789999999999999999999999 99999 999999988887776432 221 221 357999999998
Q ss_pred cccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHH
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQ 114 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~ 114 (272)
++.....+......+....+++...+....+.+.
T Consensus 80 ~~~~n~~~~~~a~~~~~~~iia~~~~~~~~~~l~ 113 (141)
T 3llv_A 80 DDEFNLKILKALRSVSDVYAIVRVSSPKKKEEFE 113 (141)
T ss_dssp CHHHHHHHHHHHHHHCCCCEEEEESCGGGHHHHH
T ss_pred CHHHHHHHHHHHHHhCCceEEEEEcChhHHHHHH
Confidence 6655443333333334445555443333334443
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.6e-09 Score=90.11 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=71.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H--------cCceeecCchhhhccCCEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S--------IGVKVLSDNNAVVEYSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~--------~g~~~~~~~~~~~~~aDivi 76 (272)
+.|||+|||+|.||++++..|..+|+. +|++| |+++++++... . ..+..+.+. +.+++||+||
T Consensus 3 ~~~kI~VIGaG~~G~~ia~~la~~g~~---~V~l~-D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi 77 (317)
T 2ewd_A 3 ERRKIAVIGSGQIGGNIAYIVGKDNLA---DVVLF-DIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVI 77 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCC---EEEEE-CSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCc---eEEEE-eCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEE
Confidence 457999999999999999999999862 79999 99987665431 1 123334555 6789999999
Q ss_pred EeeC--------------c--ccHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 77 FSVK--------------P--QVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 77 l~v~--------------~--~~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
++++ . +.+++++.++.++. ++.+++..+++...
T Consensus 78 ~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~~~ 126 (317)
T 2ewd_A 78 ITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPLDV 126 (317)
T ss_dssp ECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHH
T ss_pred EeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChHHH
Confidence 9992 1 23567777887774 68888877775543
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.9e-10 Score=96.21 Aligned_cols=102 Identities=13% Similarity=0.173 Sum_probs=75.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc---
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV--- 83 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~--- 83 (272)
....++|||||+|+||+++++.+...|+ +|.+| +|+++.. ..+.. ..+.++++++||+|++++|...
T Consensus 113 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~~~----~~g~~-~~~l~ell~~aDvV~l~~Plt~~g~ 182 (380)
T 2o4c_A 113 DLAERTYGVVGAGQVGGRLVEVLRGLGW----KVLVC-DPPRQAR----EPDGE-FVSLERLLAEADVISLHTPLNRDGE 182 (380)
T ss_dssp CGGGCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CHHHHHH----STTSC-CCCHHHHHHHCSEEEECCCCCSSSS
T ss_pred ccCCCEEEEEeCCHHHHHHHHHHHHCCC----EEEEE-cCChhhh----ccCcc-cCCHHHHHHhCCEEEEeccCccccc
Confidence 4467899999999999999999999999 99999 8866432 23433 3577889999999999998543
Q ss_pred --HHHHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 84 --VKDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 84 --~~~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
...++ .+..+.++++.++|+++.|- ..+.+.+.+.
T Consensus 183 ~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~ 222 (380)
T 2o4c_A 183 HPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLE 222 (380)
T ss_dssp SCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred cchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 34444 23455678999999887553 4455666554
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-09 Score=88.37 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=62.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcE-EEEeCCCHHHHHHHHHcCceeecCchhhh-ccCCEEEEeeCcccHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVV-EYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V-~v~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~aDivil~v~~~~~~~v~ 88 (272)
|||||||+|.||..+++.|.+.|+ ++ .+| ||++ +.++ .+.+.++++ .++|+|++|+|++...+++
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~----~lv~v~-d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~~~~~~~ 67 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGF----EIAAIL-DVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQAVKDYA 67 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEEE-CSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHhcCCC----EEEEEE-ecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHHHHHHHH
Confidence 689999999999999999998888 87 688 9885 3221 567788888 6899999999988776666
Q ss_pred HHhchhcCCCCEEEEEcC
Q 024121 89 MQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~ 106 (272)
... +..|+.+++...
T Consensus 68 ~~~---l~~G~~vv~~~~ 82 (236)
T 2dc1_A 68 EKI---LKAGIDLIVLST 82 (236)
T ss_dssp HHH---HHTTCEEEESCG
T ss_pred HHH---HHCCCcEEEECc
Confidence 443 457777776543
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.5e-10 Score=95.84 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=74.8
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-c-
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-V- 83 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~- 83 (272)
.....++|||||+|+||+++++.+...|+ +|.+| ||..+.. ..+. ...+.++++++||+|++++|.. .
T Consensus 115 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~----~V~~~-d~~~~~~----~~~~-~~~sl~ell~~aDiV~l~~Plt~~g 184 (381)
T 3oet_A 115 FSLRDRTIGIVGVGNVGSRLQTRLEALGI----RTLLC-DPPRAAR----GDEG-DFRTLDELVQEADVLTFHTPLYKDG 184 (381)
T ss_dssp CCGGGCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CHHHHHT----TCCS-CBCCHHHHHHHCSEEEECCCCCCSS
T ss_pred CccCCCEEEEEeECHHHHHHHHHHHHCCC----EEEEE-CCChHHh----ccCc-ccCCHHHHHhhCCEEEEcCcCCccc
Confidence 34567899999999999999999999999 99999 8754322 1222 3457889999999999999843 2
Q ss_pred ---HHHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 84 ---VKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 84 ---~~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
...++ .+....++++.++|+++-| +..+.+.+.+.
T Consensus 185 ~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~ 225 (381)
T 3oet_A 185 PYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLN 225 (381)
T ss_dssp TTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred cccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 33333 2344557899999988654 34456666554
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.8e-09 Score=89.95 Aligned_cols=99 Identities=11% Similarity=0.185 Sum_probs=72.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCc-eeecCchhhhc--cCCEEEEeeCc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSVKP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDivil~v~~ 81 (272)
|+++||||||+|.||..++..|.+. ++ +|. ++ +|++++++.+.+ .|+ ..+.+.++++. +.|+|++|+|+
T Consensus 3 m~~~~igiiG~G~~g~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 77 (330)
T 3e9m_A 3 LDKIRYGIMSTAQIVPRFVAGLRESAQA----EVRGIA-SRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYN 77 (330)
T ss_dssp CCCEEEEECSCCTTHHHHHHHHHHSSSE----EEEEEB-CSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCG
T ss_pred CCeEEEEEECchHHHHHHHHHHHhCCCc----EEEEEE-eCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCC
Confidence 3567999999999999999999885 44 665 67 999999888776 677 57788888887 79999999999
Q ss_pred ccHHHHHHHhchhcCCCC-EEEEEcCCCCHHHHH
Q 024121 82 QVVKDVAMQIRPLLSRKK-LLVSVAAGVKLKDLQ 114 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~-~iis~~~~~~~~~l~ 114 (272)
....+++.... ..++ +++.-.-+.+.+..+
T Consensus 78 ~~h~~~~~~al---~~gk~vl~EKP~~~~~~e~~ 108 (330)
T 3e9m_A 78 QGHYSAAKLAL---SQGKPVLLEKPFTLNAAEAE 108 (330)
T ss_dssp GGHHHHHHHHH---HTTCCEEECSSCCSSHHHHH
T ss_pred HHHHHHHHHHH---HCCCeEEEeCCCCCCHHHHH
Confidence 87666665443 2344 444322234444433
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-09 Score=94.17 Aligned_cols=103 Identities=16% Similarity=0.152 Sum_probs=75.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|+||+.+++.+...|+ +|.+| +|++++. + +..+. ..+..+++++||+|++++|.. ..+
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~p~t~~t~ 213 (331)
T 1xdw_A 143 EVRNCTVGVVGLGRIGRVAAQIFHGMGA----TVIGE-DVFEIKG--I-EDYCT-QVSLDEVLEKSDIITIHAPYIKENG 213 (331)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCCS--C-TTTCE-ECCHHHHHHHCSEEEECCCCCTTTC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCccHH--H-Hhccc-cCCHHHHHhhCCEEEEecCCchHHH
Confidence 3456899999999999999999999999 99999 9987543 2 22233 347788899999999999864 333
Q ss_pred HHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 86 ~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
.++ .+..+.++++.++|+++.| +..+.+.+.+.
T Consensus 214 ~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~ 249 (331)
T 1xdw_A 214 AVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVE 249 (331)
T ss_dssp CSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHH
Confidence 333 2344557889999988654 34456666664
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-08 Score=88.42 Aligned_cols=97 Identities=19% Similarity=0.319 Sum_probs=71.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCc-eeecCchhhhc--cCCEEEEeeCccc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSVKPQV 83 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDivil~v~~~~ 83 (272)
++||||||+|.||..++..|.+. ++ ++. ++ ++++++++++.+ .|+ ..+.+.+++++ ++|+|++|+|+..
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 76 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDDA----ILYAIS-DVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNT 76 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTTE----EEEEEE-CSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCCc----EEEEEE-CCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcc
Confidence 47999999999999999999875 44 655 67 999999888776 676 47788889887 7999999999987
Q ss_pred HHHHHHHhchhcCCCCEEE-EEcCCCCHHHHH
Q 024121 84 VKDVAMQIRPLLSRKKLLV-SVAAGVKLKDLQ 114 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~ii-s~~~~~~~~~l~ 114 (272)
..+++.... ..++-|+ .-.-+.+.+..+
T Consensus 77 h~~~~~~al---~~gk~v~~EKP~~~~~~e~~ 105 (344)
T 3ezy_A 77 HSELVIACA---KAKKHVFCEKPLSLNLADVD 105 (344)
T ss_dssp HHHHHHHHH---HTTCEEEEESCSCSCHHHHH
T ss_pred hHHHHHHHH---hcCCeEEEECCCCCCHHHHH
Confidence 766665443 3445444 322234554433
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.5e-08 Score=73.12 Aligned_cols=91 Identities=11% Similarity=0.237 Sum_probs=66.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCc--hhh-----hccCCEEEEeeCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NAV-----VEYSDVVVFSVKP 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~--~~~-----~~~aDivil~v~~ 81 (272)
..+|.|+|+|.+|..+++.|.+.|+ +|+++ ++++++.+.+.+.|+.+. .|. .+. +.++|+||+++++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~----~v~vi-d~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 81 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI----PLVVI-ETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPN 81 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC----CEEEE-ESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC----CEEEE-ECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCC
Confidence 4689999999999999999999999 99999 999999999888777543 221 222 4689999999987
Q ss_pred ccHHH-HHHHhchhcCCCCEEEEEcC
Q 024121 82 QVVKD-VAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 82 ~~~~~-v~~~l~~~l~~~~~iis~~~ 106 (272)
+.... ++..+.. +.++..++.-..
T Consensus 82 ~~~n~~~~~~a~~-~~~~~~iiar~~ 106 (140)
T 3fwz_A 82 GYEAGEIVASARA-KNPDIEIIARAH 106 (140)
T ss_dssp HHHHHHHHHHHHH-HCSSSEEEEEES
T ss_pred hHHHHHHHHHHHH-HCCCCeEEEEEC
Confidence 65433 3333333 345555554433
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.9e-09 Score=90.42 Aligned_cols=101 Identities=19% Similarity=0.265 Sum_probs=70.2
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcE-EEEeCCCHHHHHHHHHcCceeecCchhhhc--cCCEEEEeeC
Q 024121 5 PIPAESFILGFIGAGKMAESIAKGVAKS-GVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVK 80 (272)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V-~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDivil~v~ 80 (272)
|.+.+.+||||||+|.||..++..|.+. ++ ++ .++ ++++++++.+.+. +....+.+++++ ++|+|++|+|
T Consensus 5 p~~~~~~~igiIG~G~~g~~~~~~l~~~~~~----~~v~v~-d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp 78 (315)
T 3c1a_A 5 PANNSPVRLALIGAGRWGKNYIRTIAGLPGA----ALVRLA-SSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATP 78 (315)
T ss_dssp ----CCEEEEEEECTTTTTTHHHHHHHCTTE----EEEEEE-ESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESC
T ss_pred CCCCCcceEEEECCcHHHHHHHHHHHhCCCc----EEEEEE-eCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCC
Confidence 4444568999999999999999999885 44 54 477 9999887665544 666778888885 7999999999
Q ss_pred cccHHHHHHHhchhcCCCCEEE-EEcCCCCHHHHH
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLV-SVAAGVKLKDLQ 114 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~ii-s~~~~~~~~~l~ 114 (272)
+....+++.... ..|+.|+ .-.-..+.+...
T Consensus 79 ~~~h~~~~~~al---~~Gk~v~~eKP~~~~~~~~~ 110 (315)
T 3c1a_A 79 PATHAEITLAAI---ASGKAVLVEKPLTLDLAEAE 110 (315)
T ss_dssp GGGHHHHHHHHH---HTTCEEEEESSSCSCHHHHH
T ss_pred hHHHHHHHHHHH---HCCCcEEEcCCCcCCHHHHH
Confidence 988777665543 3555444 322234454433
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.1e-08 Score=84.39 Aligned_cols=111 Identities=15% Similarity=0.245 Sum_probs=74.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---c------CceeecCchhhhccCCEEEEeeCc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I------GVKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~------g~~~~~~~~~~~~~aDivil~v~~ 81 (272)
|||+|||+|.||.+++..|...|+. .+|.+| |+++++++.... . ...+..+..+.+++||+||++++.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~--~eV~L~-D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~ 77 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSC--SELVLV-DRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGA 77 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC--SEEEEE-CSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC--
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC--CEEEEE-eCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCC
Confidence 6899999999999999999998863 379999 999886654222 1 123322334668999999999942
Q ss_pred c----------------cHHHHHHHhchhcCCCCEEEEEcCCCCH--HHHHHHhCCCCEEEE
Q 024121 82 Q----------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTGHSRFIRV 125 (272)
Q Consensus 82 ~----------------~~~~v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~~~~~~~~ 125 (272)
. .+++++.++.++ .|+.+++..+++... ..+.+..+..++++.
T Consensus 78 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~ 138 (304)
T 2v6b_A 78 NQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQLAPGQPVIGS 138 (304)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred CCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence 2 236667777776 578777766676543 223444444456554
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-08 Score=86.97 Aligned_cols=85 Identities=16% Similarity=0.286 Sum_probs=66.8
Q ss_pred CCeEEEEcccHHHHHHHHHHH-h-CCCCCCCcEE-EEeCCCHHHHHHHHH-cC--ceeecCchhhhcc--CCEEEEeeCc
Q 024121 10 SFILGFIGAGKMAESIAKGVA-K-SGVLPPDRIC-TAVHSNLKRRDAFES-IG--VKVLSDNNAVVEY--SDVVVFSVKP 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~-~-~g~~~~~~V~-v~~~r~~~~~~~l~~-~g--~~~~~~~~~~~~~--aDivil~v~~ 81 (272)
++||||||+|.||..++..+. + .++ ++. ++ +|++++++.+.+ .| ...+.+.++++++ .|+|++|+|+
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~----~l~av~-d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~ 76 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGA----EIVAVT-DVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWG 76 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSE----EEEEEE-CSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCc----EEEEEE-cCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCc
Confidence 469999999999999999998 4 344 665 67 999999888776 67 6778899998875 9999999998
Q ss_pred ccHHHHHHHhchhcCCCCEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~ii 102 (272)
....+++.... ..|+.|+
T Consensus 77 ~~h~~~~~~al---~~Gk~vl 94 (344)
T 3mz0_A 77 PAHESSVLKAI---KAQKYVF 94 (344)
T ss_dssp GGHHHHHHHHH---HTTCEEE
T ss_pred hhHHHHHHHHH---HCCCcEE
Confidence 87766665443 3455444
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-08 Score=86.91 Aligned_cols=89 Identities=12% Similarity=0.273 Sum_probs=67.8
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHH-hC-CCCCCCcE-EEEeCCCHHHHHHHHH-cCc-eeecCchhhhc--cCCEEEEe
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVA-KS-GVLPPDRI-CTAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFS 78 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~-~~-g~~~~~~V-~v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDivil~ 78 (272)
.+++++||+|||+|.||..++..|. +. ++ ++ .++ ++++++++.+.+ .|+ .++.+..++++ ++|+|++|
T Consensus 4 ~~~~~~~v~iiG~G~ig~~~~~~l~~~~~~~----~~vav~-d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~ 78 (346)
T 3cea_A 4 TTRKPLRAAIIGLGRLGERHARHLVNKIQGV----KLVAAC-ALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIV 78 (346)
T ss_dssp -CCCCEEEEEECCSTTHHHHHHHHHHTCSSE----EEEEEE-CSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEEC
T ss_pred CCCCcceEEEEcCCHHHHHHHHHHHhcCCCc----EEEEEe-cCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEe
Confidence 3456789999999999999999988 53 55 64 577 999999887766 577 66778888876 69999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEE
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
+|+....+++... +..|+.|+
T Consensus 79 tp~~~h~~~~~~a---l~~G~~v~ 99 (346)
T 3cea_A 79 APTPFHPEMTIYA---MNAGLNVF 99 (346)
T ss_dssp SCGGGHHHHHHHH---HHTTCEEE
T ss_pred CChHhHHHHHHHH---HHCCCEEE
Confidence 9988766665443 33565554
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.7e-08 Score=85.45 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=60.0
Q ss_pred CCeEEEEcccHHHH-HHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-cCcee-ecCchhhh-ccCCEEEEeeCcccH
Q 024121 10 SFILGFIGAGKMAE-SIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGVKV-LSDNNAVV-EYSDVVVFSVKPQVV 84 (272)
Q Consensus 10 ~~~IgiIG~G~mG~-~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~-~~~~~~~~-~~aDivil~v~~~~~ 84 (272)
++||||||+|.||. .++..|.+. ++ ++.++ ++++++++++.+ .|+.. ..+..+.+ .++|+|++|+|+...
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~~----~l~v~-d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h 76 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPDI----ELVLC-TRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVH 76 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTE----EEEEE-CSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGH
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCCc----eEEEE-eCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhH
Confidence 47999999999998 589988764 45 77788 999999888776 57653 44545555 689999999999877
Q ss_pred HHHHHHh
Q 024121 85 KDVAMQI 91 (272)
Q Consensus 85 ~~v~~~l 91 (272)
.+++...
T Consensus 77 ~~~~~~a 83 (323)
T 1xea_A 77 STLAAFF 83 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666543
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.9e-08 Score=86.52 Aligned_cols=100 Identities=20% Similarity=0.276 Sum_probs=71.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHH-h-CCCCCCCcEE-EEeCCCHHHHHHHHH-cC--ceeecCchhhhc--cCCEEEEee
Q 024121 8 AESFILGFIGAGKMAESIAKGVA-K-SGVLPPDRIC-TAVHSNLKRRDAFES-IG--VKVLSDNNAVVE--YSDVVVFSV 79 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~-~-~g~~~~~~V~-v~~~r~~~~~~~l~~-~g--~~~~~~~~~~~~--~aDivil~v 79 (272)
|+.+||||||+|.||..++..|. + .++ ++. ++ ++++++++.+.+ .| +..+.+.+++++ +.|+|++|+
T Consensus 21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~----~lvav~-d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~t 95 (357)
T 3ec7_A 21 GMTLKAGIVGIGMIGSDHLRRLANTVSGV----EVVAVC-DIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITA 95 (357)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTCTTE----EEEEEE-CSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECS
T ss_pred CCeeeEEEECCcHHHHHHHHHHHhhCCCc----EEEEEE-eCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcC
Confidence 35579999999999999999998 4 344 665 67 999999888776 56 677889899887 589999999
Q ss_pred CcccHHHHHHHhchhcCCCCEEE-EEcCCCCHHHHHH
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLV-SVAAGVKLKDLQE 115 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~ii-s~~~~~~~~~l~~ 115 (272)
|+....+++.... ..|+-|+ .-.-+.+.+..++
T Consensus 96 p~~~h~~~~~~al---~aGk~Vl~EKPla~~~~e~~~ 129 (357)
T 3ec7_A 96 SNEAHADVAVAAL---NANKYVFCEKPLAVTAADCQR 129 (357)
T ss_dssp CGGGHHHHHHHHH---HTTCEEEEESSSCSSHHHHHH
T ss_pred CcHHHHHHHHHHH---HCCCCEEeecCccCCHHHHHH
Confidence 9887766665443 3455444 3222344444333
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.3e-08 Score=86.25 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=68.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHHcCceeecCchhhhc--cCCEEEEeeCccc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDivil~v~~~~ 83 (272)
|+.+||||||+|.||...+..|.+. ++ +|. ++ ++++++++...+.|+..+.|.++++. +.|+|++|+|+..
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~l~~~~~~----~l~av~-d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~ 77 (359)
T 3e18_A 3 LKKYQLVIVGYGGMGSYHVTLASAADNL----EVHGVF-DILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDS 77 (359)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHTSTTE----EEEEEE-CSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGG
T ss_pred CCcCcEEEECcCHHHHHHHHHHHhCCCc----EEEEEE-cCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 3567999999999999999998876 44 665 67 99999887666688888888899887 7899999999887
Q ss_pred HHHHHHHhchhcCCCCEEE
Q 024121 84 VKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~ii 102 (272)
..++..... ..|+-|+
T Consensus 78 h~~~~~~al---~aGkhVl 93 (359)
T 3e18_A 78 HKELAISAL---EAGKHVV 93 (359)
T ss_dssp HHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHH---HCCCCEE
Confidence 666655433 3455554
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.3e-08 Score=85.78 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=68.2
Q ss_pred CCCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCccc
Q 024121 8 AESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~ 83 (272)
|+++||||||+|.||.. ++..|.+. ++ ++. ++ +|++++.+.+.+ .|+...++.+++..++|+|++|+|+..
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~~l~~~~~~----~lvav~-d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~ 77 (319)
T 1tlt_A 3 LKKLRIGVVGLGGIAQKAWLPVLAAASDW----TLQGAW-SPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTAS 77 (319)
T ss_dssp --CEEEEEECCSTHHHHTHHHHHHSCSSE----EEEEEE-CSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTH
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCe----EEEEEE-CCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchh
Confidence 35679999999999996 88888763 45 665 78 999998887766 577666676666568999999999887
Q ss_pred HHHHHHHhchhcCCCCEEE-EEcCCCCHHHH
Q 024121 84 VKDVAMQIRPLLSRKKLLV-SVAAGVKLKDL 113 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~ii-s~~~~~~~~~l 113 (272)
..+++... +..|+.|+ .-.-+.+.+..
T Consensus 78 h~~~~~~a---l~~G~~v~~eKP~~~~~~~~ 105 (319)
T 1tlt_A 78 HFDVVSTL---LNAGVHVCVDKPLAENLRDA 105 (319)
T ss_dssp HHHHHHHH---HHTTCEEEEESSSCSSHHHH
T ss_pred HHHHHHHH---HHcCCeEEEeCCCCCCHHHH
Confidence 66665543 33555444 32223445443
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.77 E-value=3.1e-08 Score=88.79 Aligned_cols=100 Identities=12% Similarity=0.134 Sum_probs=76.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-HH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-VK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~~ 85 (272)
....++|+|||+|.||..+|+.+...|. +|++| +|++.+.......|+.+ .+.+++++++|+|++++.... +.
T Consensus 254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~----~Viv~-d~~~~~~~~a~~~g~~~-~~l~ell~~aDiVi~~~~t~~lI~ 327 (479)
T 1v8b_A 254 LISGKIVVICGYGDVGKGCASSMKGLGA----RVYIT-EIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVDVIK 327 (479)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTC----EEEEE-CSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSSSBC
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHhCcC----EEEEE-eCChhhHHHHHHcCCEe-cCHHHHHhcCCEEEECCChhhhcC
Confidence 4567899999999999999999999999 99999 99998765555567765 478899999999999974333 21
Q ss_pred HHHHHhchhcCCCCEEEEEcCC---CCHHHHHH
Q 024121 86 DVAMQIRPLLSRKKLLVSVAAG---VKLKDLQE 115 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~~---~~~~~l~~ 115 (272)
.+....++++.++|++..+ +..+.+.+
T Consensus 328 ---~~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 328 ---LEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp ---HHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred ---HHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 1233446889999988665 34556655
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=5e-08 Score=83.33 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=65.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHH---c-------C--ceeecCchhhhccCCEEE
Q 024121 11 FILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFES---I-------G--VKVLSDNNAVVEYSDVVV 76 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~---~-------g--~~~~~~~~~~~~~aDivi 76 (272)
|||+|||+|.||.+++..|... |+ +|.+| |+++++++.... . . +..+.+.++ +++||+||
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~----~V~l~-D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvVi 74 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLAR----ELVLL-DVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVI 74 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCS----EEEEE-CSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCC----EEEEE-eCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEE
Confidence 6899999999999999999985 66 99999 999877665431 1 1 233456655 89999999
Q ss_pred EeeCcc----------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 77 FSVKPQ----------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 77 l~v~~~----------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
+|+|.. .++++.+.+.++ .++..++..+++..
T Consensus 75 iav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~viv~tNP~~ 122 (310)
T 1guz_A 75 ITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVSNPLD 122 (310)
T ss_dssp ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECCSSHH
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEEcCchH
Confidence 999531 124555566666 46667666666543
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.4e-08 Score=83.81 Aligned_cols=84 Identities=17% Similarity=0.267 Sum_probs=65.0
Q ss_pred CeEEEEcccHHHHHH-HHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cCce-eecCchhhhc--cCCEEEEeeCcccH
Q 024121 11 FILGFIGAGKMAESI-AKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVK-VLSDNNAVVE--YSDVVVFSVKPQVV 84 (272)
Q Consensus 11 ~~IgiIG~G~mG~~l-a~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~--~aDivil~v~~~~~ 84 (272)
+||||||+|.||..+ +..|.+.++ ++. ++ +|++++++++.+ .|+. ...+.+++++ ++|+|++|+|+...
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~~----~~vav~-d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h 75 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATGG----EVVSMM-STSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELH 75 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTTC----EEEEEE-CSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGH
T ss_pred CeEEEEcccHHHHHhhhHHhhcCCC----eEEEEE-CCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHh
Confidence 589999999999998 788887666 665 77 999999887766 5764 6678888876 59999999998877
Q ss_pred HHHHHHhchhcCCCCEEE
Q 024121 85 KDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~ii 102 (272)
.+++.... ..|+.|+
T Consensus 76 ~~~~~~al---~~Gk~v~ 90 (332)
T 2glx_A 76 REQTLAAI---RAGKHVL 90 (332)
T ss_dssp HHHHHHHH---HTTCEEE
T ss_pred HHHHHHHH---HCCCeEE
Confidence 66665443 3566444
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.9e-08 Score=81.52 Aligned_cols=90 Identities=21% Similarity=0.182 Sum_probs=66.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
++|||+|+|+|+||+.+++.+.+.++ ++. ++ +|+++. ..|+.++++.+++. ++|+||-++.|+.+.+.
T Consensus 2 ~MmkI~ViGaGrMG~~i~~~l~~~~~----eLva~~-d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft~p~a~~~~ 70 (243)
T 3qy9_A 2 ASMKILLIGYGAMNQRVARLAEEKGH----EIVGVI-ENTPKA-----TTPYQQYQHIADVK-GADVAIDFSNPNLLFPL 70 (243)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC----EEEEEE-CSSCC-------CCSCBCSCTTTCT-TCSEEEECSCHHHHHHH
T ss_pred CceEEEEECcCHHHHHHHHHHHhCCC----EEEEEE-ecCccc-----cCCCceeCCHHHHh-CCCEEEEeCChHHHHHH
Confidence 46899999999999999999998875 655 56 887652 36788888888877 99999977777776666
Q ss_pred HHHhchhcCCCCEEEEEcCCCCHHHHH
Q 024121 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQ 114 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~~~~~l~ 114 (272)
+. +..+.-+|..+.|++.+.++
T Consensus 71 ~~-----l~~g~~vVigTTG~s~e~~~ 92 (243)
T 3qy9_A 71 LD-----EDFHLPLVVATTGEKEKLLN 92 (243)
T ss_dssp HT-----SCCCCCEEECCCSSHHHHHH
T ss_pred HH-----HhcCCceEeCCCCCCHHHHH
Confidence 54 34555566556677665443
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-07 Score=76.94 Aligned_cols=89 Identities=18% Similarity=0.167 Sum_probs=66.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceee-cCc------hh-hhccCCEEEEeeCc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL-SDN------NA-VVEYSDVVVFSVKP 81 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~-~~~------~~-~~~~aDivil~v~~ 81 (272)
|||.|+|+|.+|+.+++.|.+.|+ +|+++ ++++++.+.+.+ .+..+. .|. .+ -+.++|+||+++++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~----~v~vi-d~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 75 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKY----GVVII-NKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPR 75 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTC----CEEEE-ESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCC
Confidence 689999999999999999999999 99999 999999988765 465432 221 12 25689999999998
Q ss_pred ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
+.....+..+...+.+...++..
T Consensus 76 d~~n~~~~~~a~~~~~~~~iia~ 98 (218)
T 3l4b_C 76 DEVNLFIAQLVMKDFGVKRVVSL 98 (218)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEEC
T ss_pred cHHHHHHHHHHHHHcCCCeEEEE
Confidence 87666555544443355555543
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.8e-08 Score=74.54 Aligned_cols=90 Identities=16% Similarity=0.298 Sum_probs=61.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cC---ch---hh-hccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD---NN---AV-VEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~---~~---~~-~~~aDivil~v~ 80 (272)
++++|.|+|+|.+|..++..|.+.|+ +|+++ +|++++.+.+.+.+.... .+ .+ ++ ..++|+||.|++
T Consensus 5 ~~~~v~I~G~G~iG~~~a~~l~~~g~----~v~~~-d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~ 79 (144)
T 2hmt_A 5 KNKQFAVIGLGRFGGSIVKELHRMGH----EVLAV-DINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIG 79 (144)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTC----CCEEE-ESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCC
T ss_pred cCCcEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCC
Confidence 34679999999999999999999998 99999 999988777665554322 12 11 22 568999999998
Q ss_pred cc-cHHHHHHHhchhcCCCCEEEE
Q 024121 81 PQ-VVKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 81 ~~-~~~~v~~~l~~~l~~~~~iis 103 (272)
.+ .....+......+.+..+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~ii~~ 103 (144)
T 2hmt_A 80 ANIQASTLTTLLLKELDIPNIWVK 103 (144)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CchHHHHHHHHHHHHcCCCeEEEE
Confidence 65 433233333333455544443
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.72 E-value=8.7e-08 Score=82.68 Aligned_cols=101 Identities=14% Similarity=0.236 Sum_probs=70.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCc-EEEEeCCCHHHHHHHHH-cCc-eeecCchhhhc--cCCEEEEeeCcccH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSVKPQVV 84 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~-V~v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDivil~v~~~~~ 84 (272)
++||||||+|.||..++..|.+.+. ...+ +.++ +|++++++.+.+ .|+ .++.|.+++++ +.|+|++|+|+...
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~~~-~~~~l~av~-d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H 79 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTLPR-SEHQVVAVA-ARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQH 79 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSCT-TTEEEEEEE-CSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGH
T ss_pred ccEEEEECchHHHHHHHHHHHhCCC-CCeEEEEEE-cCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHH
Confidence 4799999999999999999876542 0013 4567 999999888876 676 57788899887 69999999998876
Q ss_pred HHHHHHhchhcCCCCEEE-EEcCCCCHHHHHH
Q 024121 85 KDVAMQIRPLLSRKKLLV-SVAAGVKLKDLQE 115 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~ii-s~~~~~~~~~l~~ 115 (272)
.++..... ..|+-|+ .-.-+.+.++.++
T Consensus 80 ~~~~~~al---~~GkhVl~EKP~a~~~~e~~~ 108 (334)
T 3ohs_X 80 KAAVMLCL---AAGKAVLCEKPMGVNAAEVRE 108 (334)
T ss_dssp HHHHHHHH---HTTCEEEEESSSSSSHHHHHH
T ss_pred HHHHHHHH---hcCCEEEEECCCCCCHHHHHH
Confidence 66654433 3455444 3222334544443
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=4e-08 Score=88.37 Aligned_cols=97 Identities=10% Similarity=0.083 Sum_probs=74.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-H-
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V- 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~- 84 (272)
....++|+|||+|.||..+|+.+...|. +|++| +|++.+.......|+.. .+.+++++++|+|++++.... +
T Consensus 274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~----~V~v~-d~~~~~~~~a~~~G~~~-~~l~ell~~aDiVi~~~~t~~lI~ 347 (494)
T 3d64_A 274 MIAGKIAVVAGYGDVGKGCAQSLRGLGA----TVWVT-EIDPICALQAAMEGYRV-VTMEYAADKADIFVTATGNYHVIN 347 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECSSSSCSBC
T ss_pred ccCCCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-eCChHhHHHHHHcCCEe-CCHHHHHhcCCEEEECCCcccccC
Confidence 4567899999999999999999999998 99999 99987754444567765 478899999999999984332 2
Q ss_pred HHHHHHhchhcCCCCEEEEEcCCC---CHHHH
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAGV---KLKDL 113 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~~---~~~~l 113 (272)
.+.+ ..++++.++|++..+- ..+.+
T Consensus 348 ~~~l----~~MK~gAilINvgrg~veID~~aL 375 (494)
T 3d64_A 348 HDHM----KAMRHNAIVCNIGHFDSEIDVAST 375 (494)
T ss_dssp HHHH----HHCCTTEEEEECSSSSCSBCCGGG
T ss_pred HHHH----hhCCCCcEEEEcCCCcchhchHHH
Confidence 2333 4467899999886652 44455
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.71 E-value=4.2e-08 Score=84.26 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=66.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc------CceeecCchhhhccCCEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI------GVKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~------g~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
+.++|+|||+|.||..++..|.+.. +..+|.+| ||++++++++.+. ++. +.+.++++ ++|+|++|+|..
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~--~~~~V~v~-~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~ 198 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVF--DIGEVKAY-DVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSR 198 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHS--CCCEEEEE-CSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCS
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhC--CccEEEEE-CCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCC
Confidence 5679999999999999999998732 12389999 9999999888762 244 67778888 999999999864
Q ss_pred cHHHHHHHhchhcCCCCEEEEE
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~ 104 (272)
. .++. ...+++++.|+++
T Consensus 199 ~--pv~~--~~~l~~G~~V~~i 216 (322)
T 1omo_A 199 K--PVVK--AEWVEEGTHINAI 216 (322)
T ss_dssp S--CCBC--GGGCCTTCEEEEC
T ss_pred C--ceec--HHHcCCCeEEEEC
Confidence 3 2221 1356788877765
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.71 E-value=7.5e-08 Score=82.85 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=67.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H----c----CceeecCchhhhccCCEEEE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----I----GVKVLSDNNAVVEYSDVVVF 77 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~----~----g~~~~~~~~~~~~~aDivil 77 (272)
.+||+|||+|.||.+++..|...|+. +|.+| |+++++++... . . .+..+.+. +++++||+||+
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g~~---~V~L~-Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~ 88 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKDLG---DVYMF-DIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVII 88 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCC---EEEEE-CSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCC---eEEEE-ECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEE
Confidence 36999999999999999999999873 69999 99987765321 1 0 23444566 77899999999
Q ss_pred ee--Cc--------------ccHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 78 SV--KP--------------QVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 78 ~v--~~--------------~~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
++ |. ..+.+++.++.++. |+.+++..++++
T Consensus 89 avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~ 134 (328)
T 2hjr_A 89 TAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPL 134 (328)
T ss_dssp CCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred cCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCch
Confidence 98 32 12556677777664 777776555543
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-07 Score=85.71 Aligned_cols=110 Identities=20% Similarity=0.232 Sum_probs=74.3
Q ss_pred CCCeEEEEcccHH--HHHHHHHHHhC----CCCCCCcEEEEeCCCHHHHHHHHH--------c--C--ceeecCchhhhc
Q 024121 9 ESFILGFIGAGKM--AESIAKGVAKS----GVLPPDRICTAVHSNLKRRDAFES--------I--G--VKVLSDNNAVVE 70 (272)
Q Consensus 9 ~~~~IgiIG~G~m--G~~la~~l~~~----g~~~~~~V~v~~~r~~~~~~~l~~--------~--g--~~~~~~~~~~~~ 70 (272)
+.|||+|||+|.| |.+++..|.+. |+ +|.+| |+++++++.... . . +..+.|..++++
T Consensus 2 ~~~KIaVIGAGsVg~g~ala~~La~~~~l~~~----eV~L~-Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~ 76 (480)
T 1obb_A 2 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGS----TVTLM-DIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVII 76 (480)
T ss_dssp CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTC----EEEEE-CSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCcCCCC----EEEEE-eCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhC
Confidence 4679999999997 57677788754 56 99999 999987654322 1 1 334456667889
Q ss_pred cCCEEEEeeCcc------------------------------------------cHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 71 YSDVVVFSVKPQ------------------------------------------VVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 71 ~aDivil~v~~~------------------------------------------~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
+||+||++++.. .+.++++.+..+ .|+..++..++++
T Consensus 77 dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~-~P~A~ii~~TNPv 155 (480)
T 1obb_A 77 DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKL-SPKAWYLQAANPI 155 (480)
T ss_dssp TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHH-CTTCEEEECSSCH
T ss_pred CCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHH-CCCeEEEEeCCcH
Confidence 999999999641 233455555554 4788888777766
Q ss_pred CH--HHHHHHhCCCCEEEE
Q 024121 109 KL--KDLQEWTGHSRFIRV 125 (272)
Q Consensus 109 ~~--~~l~~~~~~~~~~~~ 125 (272)
.. ..+.+ ++..++++.
T Consensus 156 di~t~~~~k-~p~~rviG~ 173 (480)
T 1obb_A 156 FEGTTLVTR-TVPIKAVGF 173 (480)
T ss_dssp HHHHHHHHH-HSCSEEEEE
T ss_pred HHHHHHHHH-CCCCcEEec
Confidence 53 23333 554566664
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=5e-08 Score=86.01 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=76.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-HH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-VK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~~ 85 (272)
....++|+|||+|.+|.++++.|...|. +|.++ ++++.+.......|... .+.+++++++|+|+++..... +.
T Consensus 208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga----~Viv~-D~~p~~a~~A~~~G~~~-~sL~eal~~ADVVilt~gt~~iI~ 281 (436)
T 3h9u_A 208 MIAGKTACVCGYGDVGKGCAAALRGFGA----RVVVT-EVDPINALQAAMEGYQV-LLVEDVVEEAHIFVTTTGNDDIIT 281 (436)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSCSBC
T ss_pred cccCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-CCChhhhHHHHHhCCee-cCHHHHHhhCCEEEECCCCcCccC
Confidence 3457899999999999999999999998 99999 99997776666678765 478899999999998765433 22
Q ss_pred HHHHHhchhcCCCCEEEEEcCC---CCHHHHHH
Q 024121 86 DVAMQIRPLLSRKKLLVSVAAG---VKLKDLQE 115 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~~---~~~~~l~~ 115 (272)
.+....++++.++|++..+ +..+.+.+
T Consensus 282 ---~e~l~~MK~gAIVINvgRg~vEID~~~L~~ 311 (436)
T 3h9u_A 282 ---SEHFPRMRDDAIVCNIGHFDTEIQVAWLKA 311 (436)
T ss_dssp ---TTTGGGCCTTEEEEECSSSGGGBCHHHHHH
T ss_pred ---HHHHhhcCCCcEEEEeCCCCCccCHHHHHh
Confidence 2334456889999987654 33445544
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.70 E-value=8e-08 Score=83.84 Aligned_cols=88 Identities=15% Similarity=0.308 Sum_probs=66.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcE-EEEeCCCHHHHHHHHH-cC----ceeecCchhhhc--cCCEEEE
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKS-GVLPPDRI-CTAVHSNLKRRDAFES-IG----VKVLSDNNAVVE--YSDVVVF 77 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V-~v~~~r~~~~~~~l~~-~g----~~~~~~~~~~~~--~aDivil 77 (272)
+++++||||||+|.||..++..|.+. ++ ++ .++ +|++++++.+.+ .| .....+.+++++ +.|+|++
T Consensus 3 ~~~~~~vgiiG~G~ig~~~~~~l~~~~~~----~lv~v~-d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i 77 (362)
T 1ydw_A 3 TETQIRIGVMGCADIARKVSRAIHLAPNA----TISGVA-SRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYV 77 (362)
T ss_dssp ---CEEEEEESCCTTHHHHHHHHHHCTTE----EEEEEE-CSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEE
T ss_pred CCCceEEEEECchHHHHHHHHHHhhCCCc----EEEEEE-cCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEE
Confidence 45678999999999999999998875 34 55 577 999998887766 55 466778888876 5999999
Q ss_pred eeCcccHHHHHHHhchhcCCCCEEE
Q 024121 78 SVKPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 78 ~v~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
|+|+....+++... +..|+.|+
T Consensus 78 ~tp~~~h~~~~~~a---l~aGk~V~ 99 (362)
T 1ydw_A 78 PLPTSLHVEWAIKA---AEKGKHIL 99 (362)
T ss_dssp CCCGGGHHHHHHHH---HTTTCEEE
T ss_pred cCChHHHHHHHHHH---HHCCCeEE
Confidence 99998776666544 34566555
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-07 Score=81.40 Aligned_cols=95 Identities=12% Similarity=0.177 Sum_probs=69.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------c----CceeecCchhhhccCCEEEE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------I----GVKVLSDNNAVVEYSDVVVF 77 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~----g~~~~~~~~~~~~~aDivil 77 (272)
.|||+|||+|.||.+++..|...|+. +|.+| |+++++++.... . .+..+.+..+++++||+||+
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~---~V~L~-D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~ 84 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELA---DVVLY-DVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIV 84 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCC---EEEEE-CSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCC---eEEEE-ECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEE
Confidence 37999999999999999999998863 69999 999876654211 1 13345677768999999999
Q ss_pred ee--Cc--cc-----------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 78 SV--KP--QV-----------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 78 ~v--~~--~~-----------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
++ |. .. ++++..++.++. |+.+++..+++..
T Consensus 85 a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~ 136 (331)
T 1pzg_A 85 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLD 136 (331)
T ss_dssp CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHH
T ss_pred ccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchH
Confidence 98 42 12 566777777764 7777775555443
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.8e-08 Score=85.57 Aligned_cols=101 Identities=16% Similarity=0.184 Sum_probs=68.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cCce-eecCchhhhc--cCCEEEEeeCcc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVK-VLSDNNAVVE--YSDVVVFSVKPQ 82 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~--~aDivil~v~~~ 82 (272)
|+++||||||+|.||..++..|.+.+. .++. ++ +|++++++++.+ .|+. .+.+.++++. +.|+|++|+|+.
T Consensus 3 m~~~rigiiG~G~ig~~~~~~l~~~~~---~~~~av~-d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 78 (329)
T 3evn_A 3 LSKVRYGVVSTAKVAPRFIEGVRLAGN---GEVVAVS-SRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQ 78 (329)
T ss_dssp --CEEEEEEBCCTTHHHHHHHHHHHCS---EEEEEEE-CSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGG
T ss_pred CCceEEEEEechHHHHHHHHHHHhCCC---cEEEEEE-cCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcH
Confidence 356799999999999999999887642 1554 67 999998877766 5764 7788899887 799999999988
Q ss_pred cHHHHHHHhchhcCCCCEEE-EEcCCCCHHHHHH
Q 024121 83 VVKDVAMQIRPLLSRKKLLV-SVAAGVKLKDLQE 115 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~ii-s~~~~~~~~~l~~ 115 (272)
...+++.... ..|+-|+ .-.-+.+.+..++
T Consensus 79 ~h~~~~~~al---~aGk~Vl~EKP~a~~~~e~~~ 109 (329)
T 3evn_A 79 DHYKVAKAAL---LAGKHVLVEKPFTLTYDQANE 109 (329)
T ss_dssp GHHHHHHHHH---HTTCEEEEESSCCSSHHHHHH
T ss_pred HHHHHHHHHH---HCCCeEEEccCCcCCHHHHHH
Confidence 7666655433 3455444 3222344444433
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.67 E-value=7.4e-08 Score=86.55 Aligned_cols=113 Identities=12% Similarity=0.201 Sum_probs=76.9
Q ss_pred CCeEEEEcccHH-HHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHH----------cC--ceeecCchhhhccCCE
Q 024121 10 SFILGFIGAGKM-AESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFES----------IG--VKVLSDNNAVVEYSDV 74 (272)
Q Consensus 10 ~~~IgiIG~G~m-G~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~----------~g--~~~~~~~~~~~~~aDi 74 (272)
.+||+|||+|.+ |.+++..|.+. +. +..+|.+| |+++++++.... .. +..+.|..+++++||+
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l-~~~eV~L~-Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~ 105 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEEF-PIRKLKLY-DNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDF 105 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTS-CEEEEEEE-CSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCC-CCCEEEEE-eCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCE
Confidence 469999999998 66688778876 22 22389999 999987654221 12 3344566788999999
Q ss_pred EEEeeCccc------------------------------------HHHHHHHhchhcCCCCEEEEEcCCCCH--HHHHHH
Q 024121 75 VVFSVKPQV------------------------------------VKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEW 116 (272)
Q Consensus 75 vil~v~~~~------------------------------------~~~v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~ 116 (272)
||++++... +.++++.+..+ .|+..++..++++.. ..+.+.
T Consensus 106 VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~-~P~A~ii~~TNPvdi~T~~~~k~ 184 (472)
T 1u8x_X 106 VMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY-SPDAWMLNYSNPAAIVAEATRRL 184 (472)
T ss_dssp EEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSCHHHHHHHHHHH
T ss_pred EEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeCCcHHHHHHHHHHh
Confidence 999997632 34555556554 588888888777654 334444
Q ss_pred hCCCCEEEE
Q 024121 117 TGHSRFIRV 125 (272)
Q Consensus 117 ~~~~~~~~~ 125 (272)
.+..++++.
T Consensus 185 ~p~~rViG~ 193 (472)
T 1u8x_X 185 RPNSKILNI 193 (472)
T ss_dssp STTCCEEEC
T ss_pred CCCCCEEEe
Confidence 454567764
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-07 Score=85.02 Aligned_cols=87 Identities=21% Similarity=0.269 Sum_probs=65.7
Q ss_pred CCCCeEEEEcccHHHH-HHHHHHHhC-CCCCCCcE-EEEeCCCHHHHHHHHH-cCce-----eecCchhhhc--cCCEEE
Q 024121 8 AESFILGFIGAGKMAE-SIAKGVAKS-GVLPPDRI-CTAVHSNLKRRDAFES-IGVK-----VLSDNNAVVE--YSDVVV 76 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~-~la~~l~~~-g~~~~~~V-~v~~~r~~~~~~~l~~-~g~~-----~~~~~~~~~~--~aDivi 76 (272)
++.+||||||+|.||. .++..|.+. ++ ++ .++ ++++++++.+.+ .|+. .+.+.+++++ +.|+|+
T Consensus 81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~----~lvav~-d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~ 155 (433)
T 1h6d_A 81 DRRFGYAIVGLGKYALNQILPGFAGCQHS----RIEALV-SGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVY 155 (433)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHTTTCSSE----EEEEEE-CSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEE
T ss_pred CCceEEEEECCcHHHHHHHHHHHhhCCCc----EEEEEE-cCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEE
Confidence 4567999999999997 899888765 34 55 577 999998887766 5653 5678888886 799999
Q ss_pred EeeCcccHHHHHHHhchhcCCCCEEE
Q 024121 77 FSVKPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 77 l~v~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
+|+|+....+++.... ..|+-|+
T Consensus 156 iatp~~~h~~~~~~al---~aGk~Vl 178 (433)
T 1h6d_A 156 IILPNSLHAEFAIRAF---KAGKHVM 178 (433)
T ss_dssp ECSCGGGHHHHHHHHH---HTTCEEE
T ss_pred EcCCchhHHHHHHHHH---HCCCcEE
Confidence 9999887766665443 3455444
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.4e-08 Score=85.93 Aligned_cols=92 Identities=11% Similarity=0.125 Sum_probs=69.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeec-------------------------
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS------------------------- 63 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~------------------------- 63 (272)
...||+|||+|.||..+++.+...|. +|++| ||++++.+.+.+.|.....
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa----~V~v~-D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~ 257 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGA----KTTGY-DVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQ 257 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTC----EEEEE-CSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHH
Confidence 34689999999999999999999998 99999 9999998888877765322
Q ss_pred CchhhhccCCEEEEee--CcccHHHHH-HHhchhcCCCCEEEEEc
Q 024121 64 DNNAVVEYSDVVVFSV--KPQVVKDVA-MQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 64 ~~~~~~~~aDivil~v--~~~~~~~v~-~~l~~~l~~~~~iis~~ 105 (272)
+..+.++++|+||.++ |......++ +++...++++.+||+++
T Consensus 258 ~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 258 ALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 3457788999999986 432111111 33444467899999874
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.6e-08 Score=83.52 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=64.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCc--eeecCchhhhccCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV--KVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~--~~~~~~~~~~~~aDivil~v~~ 81 (272)
+.++++|||+|.||..++..|.+.. +..+|.+| ||+ +++++.+ .|+ ..+ +.+++++++|+||+|+|.
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~--~~~~V~v~-~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s 193 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARF--ALEAILVH-DPY--ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRS 193 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHS--CCCEEEEE-CTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCC
T ss_pred CCcEEEEECccHHHHHHHHHHHHhC--CCcEEEEE-CCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCC
Confidence 5679999999999999999998742 12489999 999 5555543 355 445 888999999999999986
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEc
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
.. .++. .+.+++++.|+++.
T Consensus 194 ~~--pvl~--~~~l~~G~~V~~vG 213 (313)
T 3hdj_A 194 TT--PLFA--GQALRAGAFVGAIG 213 (313)
T ss_dssp SS--CSSC--GGGCCTTCEEEECC
T ss_pred CC--cccC--HHHcCCCcEEEECC
Confidence 52 2222 24578898887663
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-07 Score=80.47 Aligned_cols=94 Identities=11% Similarity=0.115 Sum_probs=67.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----------cC--ceeecCchhhhccCCEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----------IG--VKVLSDNNAVVEYSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----------~g--~~~~~~~~~~~~~aDivi 76 (272)
.++||+|||+|.||.+++..|...|+. +|.++ |+++++++.... .. +..+.+. +++++||+||
T Consensus 3 ~~~kI~VIGaG~vG~~ia~~la~~g~~---~v~L~-Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi 77 (322)
T 1t2d_A 3 PKAKIVLVGSGMIGGVMATLIVQKNLG---DVVLF-DIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVI 77 (322)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCC---EEEEE-CSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC---eEEEE-eCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEE
Confidence 457999999999999999999999873 59999 999876653211 12 3334565 7789999999
Q ss_pred Eee--Ccc-------------------cHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 77 FSV--KPQ-------------------VVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 77 l~v--~~~-------------------~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
+++ |.. .++++..++.++. |+.+++..+++.
T Consensus 78 ~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~ 129 (322)
T 1t2d_A 78 VTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPV 129 (322)
T ss_dssp ECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSH
T ss_pred EeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCCh
Confidence 998 421 2456666777664 777776555544
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.5e-08 Score=83.95 Aligned_cols=87 Identities=21% Similarity=0.340 Sum_probs=66.1
Q ss_pred CCCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-c-CceeecCchhhhcc--CCEEEEeeC
Q 024121 8 AESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-I-GVKVLSDNNAVVEY--SDVVVFSVK 80 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~-g~~~~~~~~~~~~~--aDivil~v~ 80 (272)
|+.+||||||+|.||.. ++..|.+. +. ++. ++ +|++++++.+.+ . +..++.|.++++++ .|+|++|+|
T Consensus 3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 77 (359)
T 3m2t_A 3 LSLIKVGLVGIGAQMQENLLPSLLQMQDI----RIVAAC-DSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGP 77 (359)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTCTTE----EEEEEE-CSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSC
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCc----EEEEEE-cCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCC
Confidence 45679999999999985 88888775 44 665 77 999999888777 3 56778899998874 599999999
Q ss_pred cccHHHHHHHhchhcCCCCEEE
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~ii 102 (272)
+....+++.... ..|+-|+
T Consensus 78 ~~~H~~~~~~al---~aGkhVl 96 (359)
T 3m2t_A 78 PQLHFEMGLLAM---SKGVNVF 96 (359)
T ss_dssp HHHHHHHHHHHH---HTTCEEE
T ss_pred cHHHHHHHHHHH---HCCCeEE
Confidence 887666654433 3455544
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-07 Score=84.13 Aligned_cols=114 Identities=15% Similarity=0.248 Sum_probs=77.6
Q ss_pred CCCCeEEEEcccHH--HHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc---------CceeecCchhhhccCCEEE
Q 024121 8 AESFILGFIGAGKM--AESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---------GVKVLSDNNAVVEYSDVVV 76 (272)
Q Consensus 8 ~~~~~IgiIG~G~m--G~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~---------g~~~~~~~~~~~~~aDivi 76 (272)
|+.+||+|||+|.| |..++..|+....+.. +|++| |++++++++.... .+..+.|..+++++||+||
T Consensus 3 m~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~-Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI 80 (450)
T 3fef_A 3 LDQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALY-DLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVI 80 (450)
T ss_dssp CCCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEE-CSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEE
T ss_pred CCCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEE-eCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEE
Confidence 35679999999996 6899998887432222 89999 9999887655431 2456678888999999999
Q ss_pred EeeCccc--------------------------------------HHHHHHHhchhcCCCCEEEEEcCCCCH--HHHHHH
Q 024121 77 FSVKPQV--------------------------------------VKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEW 116 (272)
Q Consensus 77 l~v~~~~--------------------------------------~~~v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~ 116 (272)
+++++.. +.++++.+..+ .|+..++..++++.. ..+.+.
T Consensus 81 ~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~-~p~a~~i~~tNPvdi~t~~~~k~ 159 (450)
T 3fef_A 81 ISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDY-APESWVINYTNPMSVCTRVLYKV 159 (450)
T ss_dssp ECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHH
T ss_pred eccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHH-CCCeEEEEecCchHHHHHHHHHH
Confidence 9997531 33444445444 477788887776653 233344
Q ss_pred hCCCCEEE
Q 024121 117 TGHSRFIR 124 (272)
Q Consensus 117 ~~~~~~~~ 124 (272)
++..++++
T Consensus 160 ~p~~rviG 167 (450)
T 3fef_A 160 FPGIKAIG 167 (450)
T ss_dssp CTTCEEEE
T ss_pred CCCCCEEE
Confidence 55445554
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-07 Score=84.78 Aligned_cols=90 Identities=12% Similarity=0.130 Sum_probs=72.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-HH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-VK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~~ 85 (272)
....++|+|||+|.||..+++.+...|. +|+++ ++++++.+...+.|+.. .+..++++++|+||.|++... +.
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga----~Viv~-d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atgt~~~i~ 344 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQGA----RVSVT-EIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATGNKDIIM 344 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSSSSCSBC
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCCCHHHHH
Confidence 3456899999999999999999999998 99999 99999887777788874 466788899999999997554 32
Q ss_pred -HHHHHhchhcCCCCEEEEEcC
Q 024121 86 -DVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 86 -~v~~~l~~~l~~~~~iis~~~ 106 (272)
+.+ ..++++.+++++..
T Consensus 345 ~~~l----~~mk~ggilvnvG~ 362 (494)
T 3ce6_A 345 LEHI----KAMKDHAILGNIGH 362 (494)
T ss_dssp HHHH----HHSCTTCEEEECSS
T ss_pred HHHH----HhcCCCcEEEEeCC
Confidence 333 34678888887643
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-07 Score=80.96 Aligned_cols=87 Identities=16% Similarity=0.251 Sum_probs=65.3
Q ss_pred CCCCeEEEEcccHHHH-HHHHHHHhCCCCCCCcE-EEEeCCCHHHHHHHHH-c-CceeecCchhhhc--cCCEEEEeeCc
Q 024121 8 AESFILGFIGAGKMAE-SIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFES-I-GVKVLSDNNAVVE--YSDVVVFSVKP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~-~la~~l~~~g~~~~~~V-~v~~~r~~~~~~~l~~-~-g~~~~~~~~~~~~--~aDivil~v~~ 81 (272)
|+++||||||+|.+|. .++..|...++ +| .++ ++++++++.+.+ . ++..+.|.+++++ +.|+|++|+|+
T Consensus 2 M~~~rvgiiG~G~~~~~~~~~~l~~~~~----~lvav~-d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 76 (336)
T 2p2s_A 2 MKKIRFAAIGLAHNHIYDMCQQLIDAGA----ELAGVF-ESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIP 76 (336)
T ss_dssp --CCEEEEECCSSTHHHHHHHHHHHTTC----EEEEEE-CSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCG
T ss_pred CCccEEEEECCChHHHHHhhhhhcCCCc----EEEEEe-CCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCCh
Confidence 4678999999999996 67777776677 76 577 999999888776 4 5677788888886 68999999998
Q ss_pred ccHHHHHHHhchhcCCCCEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~ii 102 (272)
....++.... +..|+-|+
T Consensus 77 ~~h~~~~~~a---l~aGkhVl 94 (336)
T 2p2s_A 77 CDRAELALRT---LDAGKDFF 94 (336)
T ss_dssp GGHHHHHHHH---HHTTCEEE
T ss_pred hhHHHHHHHH---HHCCCcEE
Confidence 8765555443 23455444
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.3e-08 Score=84.15 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=64.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcE-EEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V-~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
|+.+||+|||+|+||+.+++.+.+.+. .++ .++ ++++++ ++. .|+..+.+.++++.++|+||+|+|++...+
T Consensus 1 M~~irV~IiG~G~mG~~~~~~l~~~~~---~elvav~-d~~~~~--~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~~ 73 (320)
T 1f06_A 1 MTNIRVAIVGYGNLGRSVEKLIAKQPD---MDLVGIF-SRRATL--DTK-TPVFDVADVDKHADDVDVLFLCMGSATDIP 73 (320)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSS---EEEEEEE-ESSSCC--SSS-SCEEEGGGGGGTTTTCSEEEECSCTTTHHH
T ss_pred CCCCEEEEEeecHHHHHHHHHHhcCCC---CEEEEEE-cCCHHH--hhc-CCCceeCCHHHHhcCCCEEEEcCCcHHHHH
Confidence 356799999999999999999987632 154 577 888654 222 566666777787788999999999885433
Q ss_pred HHHHhchhcCCCCEEEEE-cCCCCHHHH
Q 024121 87 VAMQIRPLLSRKKLLVSV-AAGVKLKDL 113 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~-~~~~~~~~l 113 (272)
.+.. .+..++.++.. ..+.+.+.+
T Consensus 74 ~~~~---al~aG~~Vv~ekp~~~~~~~~ 98 (320)
T 1f06_A 74 EQAP---KFAQFACTVDTYDNHRDIPRH 98 (320)
T ss_dssp HHHH---HHTTTSEEECCCCCGGGHHHH
T ss_pred HHHH---HHHCCCEEEECCCCcCCHHHH
Confidence 3322 23456655532 223444444
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.5e-07 Score=80.66 Aligned_cols=102 Identities=9% Similarity=0.149 Sum_probs=69.4
Q ss_pred CCCCCCCeEEEEcccHHHH-HHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cC-ceeecCchhhhcc--CCEEEEe
Q 024121 5 PIPAESFILGFIGAGKMAE-SIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IG-VKVLSDNNAVVEY--SDVVVFS 78 (272)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~-~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~g-~~~~~~~~~~~~~--aDivil~ 78 (272)
..||+.+||||||+|.+|. .++..+...+. +|. ++ ++++++++.+.+ .| ...+.|.++++++ .|+|++|
T Consensus 21 ~~Mm~~irvgiiG~G~~~~~~~~~~~~~~~~----~lvav~-d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~ 95 (361)
T 3u3x_A 21 QSMMDELRFAAVGLNHNHIYGQVNCLLRAGA----RLAGFH-EKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSA 95 (361)
T ss_dssp -----CCEEEEECCCSTTHHHHHHHHHHTTC----EEEEEE-CSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEEC
T ss_pred hhhccCcEEEEECcCHHHHHHHHHHhhcCCc----EEEEEE-cCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEe
Confidence 3466678999999999994 56777766676 765 66 999999988876 55 5678899998875 8999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCC--CCHHHHHH
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAG--VKLKDLQE 115 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~--~~~~~l~~ 115 (272)
+|+....++..... ..|+-|+. -++ .+.++.++
T Consensus 96 tp~~~H~~~~~~al---~aGkhVl~-EKPla~~~~ea~~ 130 (361)
T 3u3x_A 96 AVSSERAELAIRAM---QHGKDVLV-DKPGMTSFDQLAK 130 (361)
T ss_dssp CCHHHHHHHHHHHH---HTTCEEEE-ESCSCSSHHHHHH
T ss_pred CChHHHHHHHHHHH---HCCCeEEE-eCCCCCCHHHHHH
Confidence 99886655554433 34554442 233 34444443
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.4e-07 Score=77.37 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=70.0
Q ss_pred CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---c------CceeecCchhhhcc
Q 024121 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I------GVKVLSDNNAVVEY 71 (272)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~------g~~~~~~~~~~~~~ 71 (272)
|.++++. +.+||+|||+|.+|.+++..|...++. .+|.++ |+++++++.... . .+.+..+..+++++
T Consensus 1 ~~~~~~~-~~~KI~IiGaG~vG~~la~~l~~~~~~--~el~L~-Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~ 76 (326)
T 2zqz_A 1 MASITDK-DHQKVILVGDGAVGSSYAYAMVLQGIA--QEIGIV-DIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKD 76 (326)
T ss_dssp -----CC-CCCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGG
T ss_pred CCccccC-CCCEEEEECCCHHHHHHHHHHHcCCCC--CEEEEE-eCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCC
Confidence 5566666 458999999999999999999888753 489999 999887654222 1 23444456777999
Q ss_pred CCEEEEeeCcc----------------cHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 72 SDVVVFSVKPQ----------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 72 aDivil~v~~~----------------~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
||+||++.+.. .++++.+.+..+ .|+..++..++++..
T Consensus 77 aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~~ 130 (326)
T 2zqz_A 77 ADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPVDI 130 (326)
T ss_dssp CSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSHHH
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCcHHH
Confidence 99999997421 123344455555 577777767665543
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.5e-07 Score=77.61 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=67.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H-c-----CceeecCchhhhccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S-I-----GVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~-~-----g~~~~~~~~~~~~~aDivil~ 78 (272)
+.+||+|||+|.||++++..|...|.. .+|.++ |+++++.+... . . ...+..+..+.+++||+||++
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~--~ev~l~-Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia 81 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIA--DEIVLI-DANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVIC 81 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEEC
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCC--CEEEEE-eCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEc
Confidence 457999999999999999999887742 379999 99987554321 1 1 234444556778999999999
Q ss_pred eCccc----------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 79 VKPQV----------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 79 v~~~~----------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
.+... +.++.+.+..+. |+..++-.++++.
T Consensus 82 ~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tNPv~ 127 (316)
T 1ldn_A 82 AGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVD 127 (316)
T ss_dssp CSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHH
T ss_pred CCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCCchH
Confidence 75321 334555565654 6666665656443
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.7e-08 Score=84.37 Aligned_cols=91 Identities=12% Similarity=0.185 Sum_probs=68.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee---------------------------
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--------------------------- 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--------------------------- 62 (272)
..||+|||+|.+|..+++.+...|. +|++| |+++++.+.+.+.|....
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa----~V~v~-D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~ 264 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGA----VVSAT-DVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVK 264 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSTTHHHHHHHTTCEECCCCC-----------------CHHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhh
Confidence 4689999999999999999999998 99999 999998888877765421
Q ss_pred --cCchhhhccCCEEEEee--CcccHHHHH-HHhchhcCCCCEEEEEc
Q 024121 63 --SDNNAVVEYSDVVVFSV--KPQVVKDVA-MQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 63 --~~~~~~~~~aDivil~v--~~~~~~~v~-~~l~~~l~~~~~iis~~ 105 (272)
.+..+.++++|+||.|+ |......++ ++....++++.+||+++
T Consensus 265 ~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 265 QAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred hHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 13456788999999996 432111111 33445568999999875
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-07 Score=80.30 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=55.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHHcCce--eecCchhhhccCCEEEEeeCcccH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFESIGVK--VLSDNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~aDivil~v~~~~~ 84 (272)
+.+||+|||+|+||..++..|.+. ++ ++. ++ +|++++++. .|+. ..++..+. .++|+||+|+|+...
T Consensus 8 ~~irv~IIG~G~iG~~~~~~l~~~~~~----elvav~-d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h 78 (304)
T 3bio_A 8 KKIRAAIVGYGNIGRYALQALREAPDF----EIAGIV-RRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREV 78 (304)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTTE----EEEEEE-CC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHH
T ss_pred CCCEEEEECChHHHHHHHHHHhcCCCC----EEEEEE-cCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhh
Confidence 457999999999999999999874 44 766 67 999887654 5543 23344443 689999999998876
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.+..... +..++.+++.
T Consensus 79 ~~~~~~a---l~aG~~Vi~e 95 (304)
T 3bio_A 79 ERTALEI---LKKGICTADS 95 (304)
T ss_dssp HHHHHHH---HTTTCEEEEC
T ss_pred HHHHHHH---HHcCCeEEEC
Confidence 6665544 3456777743
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.56 E-value=6.2e-07 Score=68.28 Aligned_cols=94 Identities=9% Similarity=0.023 Sum_probs=64.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHHHHH---cCceee-cC------chhh-hccCCEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFES---IGVKVL-SD------NNAV-VEYSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~~---~g~~~~-~~------~~~~-~~~aDivi 76 (272)
..++|.|+|+|.+|+.+++.|.+.|+ +|++. +++ +++.+.+.. .|+.+. .| ..++ ++++|+||
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~----~V~vi-d~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQ----NVTVI-SNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAIL 76 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTC----CEEEE-ECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC----CEEEE-ECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence 45789999999999999999999999 99999 997 565555543 355432 12 1222 67899999
Q ss_pred EeeCcccHHHHHHHhchhcCCCCEEEEEcCC
Q 024121 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 77 l~v~~~~~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
++++++.....+......+.+...++...+.
T Consensus 77 ~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~ 107 (153)
T 1id1_A 77 ALSDNDADNAFVVLSAKDMSSDVKTVLAVSD 107 (153)
T ss_dssp ECSSCHHHHHHHHHHHHHHTSSSCEEEECSS
T ss_pred EecCChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 9998876655554444444344444433333
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.3e-07 Score=82.02 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=68.3
Q ss_pred CCCCCCeEEEEcccH---HHHHHHHHHHhCC-CCCCCcEE--EEeCCCHHHHHHHHH-cCc---eeecCchhhhcc----
Q 024121 6 IPAESFILGFIGAGK---MAESIAKGVAKSG-VLPPDRIC--TAVHSNLKRRDAFES-IGV---KVLSDNNAVVEY---- 71 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~---mG~~la~~l~~~g-~~~~~~V~--v~~~r~~~~~~~l~~-~g~---~~~~~~~~~~~~---- 71 (272)
.+|+.+||||||+|. ||...+..+...+ + ++. ++ ++++++++.+.+ .|+ ..+.|.++++++
T Consensus 8 ~~m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~----~lva~v~-d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~ 82 (398)
T 3dty_A 8 RIPQPIRWAMVGGGSQSQIGYIHRCAALRDNTF----VLVAGAF-DIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARR 82 (398)
T ss_dssp CSCSCEEEEEEECCTTCSSHHHHHHHHHGGGSE----EEEEEEC-CSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTC
T ss_pred cccCcceEEEEcCCccchhHHHHHHHHhhCCCe----EEEEEEe-CCCHHHHHHHHHHhCCCcceeeCCHHHHHhccccc
Confidence 345678999999999 9999988887765 4 665 57 999999988776 777 577888888865
Q ss_pred ---CCEEEEeeCcccHHHHHHHhchhcCCCCEEE
Q 024121 72 ---SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 72 ---aDivil~v~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
.|+|++|+|+....++..... ..|+-|+
T Consensus 83 ~~~vD~V~i~tp~~~H~~~~~~al---~aGkhVl 113 (398)
T 3dty_A 83 ADGIQAVSIATPNGTHYSITKAAL---EAGLHVV 113 (398)
T ss_dssp TTCCSEEEEESCGGGHHHHHHHHH---HTTCEEE
T ss_pred CCCCCEEEECCCcHHHHHHHHHHH---HCCCeEE
Confidence 899999999887666654433 3455554
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.1e-07 Score=80.71 Aligned_cols=95 Identities=19% Similarity=0.280 Sum_probs=65.3
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCC-----CCCcEE-EEeCCCHHHHHHHHH-cCc-eeecCchhhhc--cCC
Q 024121 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVL-----PPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSD 73 (272)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~-----~~~~V~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aD 73 (272)
|..|.+.+||||||+|.||...+..+.+.+.. ...+|. ++ ++++++++++.+ .|+ .++.|.+++++ +.|
T Consensus 20 ~~~Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~-d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD 98 (412)
T 4gqa_A 20 FQSMSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALA-DQDQAMAERHAAKLGAEKAYGDWRELVNDPQVD 98 (412)
T ss_dssp -----CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEE-CSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCC
T ss_pred cccccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEE-cCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCC
Confidence 34555567999999999999988888764310 001444 66 999999988877 676 57788889886 589
Q ss_pred EEEEeeCcccHHHHHHHhchhcCCCCEEE
Q 024121 74 VVVFSVKPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 74 ivil~v~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
+|++|+|+....++..... ..|+-|+
T Consensus 99 ~V~I~tp~~~H~~~~~~al---~aGkhVl 124 (412)
T 4gqa_A 99 VVDITSPNHLHYTMAMAAI---AAGKHVY 124 (412)
T ss_dssp EEEECSCGGGHHHHHHHHH---HTTCEEE
T ss_pred EEEECCCcHHHHHHHHHHH---HcCCCeE
Confidence 9999999887665554433 3455444
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.3e-07 Score=80.71 Aligned_cols=85 Identities=16% Similarity=0.248 Sum_probs=66.4
Q ss_pred CCeEEEEccc-HHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeecCchhhhcc--CCEEEEeeCccc
Q 024121 10 SFILGFIGAG-KMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEY--SDVVVFSVKPQV 83 (272)
Q Consensus 10 ~~~IgiIG~G-~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~--aDivil~v~~~~ 83 (272)
.+||||||+| .||..++..|.+. ++ ++. ++ ++++++++.+.+ .|+..+.|.++++++ .|+|++|+|+..
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~ 76 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDA----QIVAAC-DPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQF 76 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTE----EEEEEE-CSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGG
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCe----EEEEEE-eCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHH
Confidence 4799999999 9999999999875 33 554 67 999998887766 688888899998874 999999999887
Q ss_pred HHHHHHHhchhcCCCCEEE
Q 024121 84 VKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~ii 102 (272)
..++..... ..++-|+
T Consensus 77 H~~~~~~al---~aGk~Vl 92 (387)
T 3moi_A 77 HCEHVVQAS---EQGLHII 92 (387)
T ss_dssp HHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHH---HCCCcee
Confidence 666654433 3455554
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.52 E-value=9.8e-08 Score=71.77 Aligned_cols=102 Identities=14% Similarity=0.204 Sum_probs=73.1
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccH
Q 024121 10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 10 ~~~IgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~ 84 (272)
..+|+|||+ |++|..++++|.+.|| + +| ++|+.+.. .+ .|+.+..+..|+.+..|++++++|++.+
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~----~--v~-~vnp~~~~--~~i~G~~~~~sl~el~~~vDlavi~vp~~~~ 83 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY----R--VL-PVNPRFQG--EELFGEEAVASLLDLKEPVDILDVFRPPSAL 83 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTC----E--EE-EECGGGTT--SEETTEECBSSGGGCCSCCSEEEECSCHHHH
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCCC----E--EE-EeCCCccc--CcCCCEEecCCHHHCCCCCCEEEEEeCHHHH
Confidence 468999999 8999999999999999 7 55 66665311 11 5788888888888889999999999888
Q ss_pred HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC--CCCEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG--HSRFI 123 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~--~~~~~ 123 (272)
.++++++... ....+|+. ++...+.+.+... +.+++
T Consensus 84 ~~v~~~~~~~-gi~~i~~~--~g~~~~~~~~~a~~~Gir~v 121 (140)
T 1iuk_A 84 MDHLPEVLAL-RPGLVWLQ--SGIRHPEFEKALKEAGIPVV 121 (140)
T ss_dssp TTTHHHHHHH-CCSCEEEC--TTCCCHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHc-CCCEEEEc--CCcCHHHHHHHHHHcCCEEE
Confidence 8888776654 23445553 4444455544432 34444
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.6e-07 Score=78.56 Aligned_cols=86 Identities=13% Similarity=0.252 Sum_probs=63.7
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCc-eeecCchhhhc--cCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDivil~v~~ 81 (272)
+++||||||+|.||.. ++..+.+. +. +|. ++ ++++++++++.+ .|+ .+++|.+++++ +.|+|++|+|+
T Consensus 22 ~mirigiIG~G~ig~~~~~~~~~~~~~~----~lvav~-d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~ 96 (350)
T 4had_A 22 SMLRFGIISTAKIGRDNVVPAIQDAENC----VVTAIA-SRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPT 96 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHCSSE----EEEEEE-CSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCG
T ss_pred CccEEEEEcChHHHHHHHHHHHHhCCCe----EEEEEE-CCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCC
Confidence 4579999999999975 56666664 33 665 66 999999988877 676 57788899875 58999999998
Q ss_pred ccHHHHHHHhchhcCCCCEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~ii 102 (272)
....++..... ..|+-|+
T Consensus 97 ~~H~~~~~~al---~aGkhVl 114 (350)
T 4had_A 97 SQHIEWSIKAA---DAGKHVV 114 (350)
T ss_dssp GGHHHHHHHHH---HTTCEEE
T ss_pred chhHHHHHHHH---hcCCEEE
Confidence 87666554433 3455444
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=8.8e-07 Score=75.84 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=71.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHHc-----CceeecCchhhhccCCEEEEeeC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FESI-----GVKVLSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~~-----g~~~~~~~~~~~~~aDivil~v~ 80 (272)
.+||+|||+|.+|.+++..|...|+. .+|.++ |+++++++. +... .+.+..+..+++++||+||++++
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~--~ev~L~-Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g 83 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTA--NELVLI-DVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAG 83 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCS--SEEEEE-CCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCC--CEEEEE-eCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCC
Confidence 47999999999999999999998763 489999 999876442 2221 22333344667899999999984
Q ss_pred ccc----------------HHHHHHHhchhcCCCCEEEEEcCCCCH--HHHHHH--hCCCCEEEE
Q 024121 81 PQV----------------VKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEW--TGHSRFIRV 125 (272)
Q Consensus 81 ~~~----------------~~~v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~--~~~~~~~~~ 125 (272)
... +.++.+.+.++ .|+.+++..+++... ..+.+. ++..++++.
T Consensus 84 ~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~~~~~~k~s~~p~~rviG~ 147 (318)
T 1y6j_A 84 ANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGS 147 (318)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred CCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCcHHHHHHHHHHHcCCCHHHEecc
Confidence 221 35566666666 577777766554432 122333 334567765
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=9.3e-07 Score=75.78 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=68.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH------cCceeecCchhhhccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES------IGVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~------~g~~~~~~~~~~~~~aDivil~ 78 (272)
..+||+|||+|.||++++..|...|+. .+|.++ |+++++++. +.. .++.+..+..+++++||+||++
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~--~~l~l~-D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ 80 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQGIT--DELVVI-DVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCIC 80 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC--ceEEEE-ecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEe
Confidence 457999999999999999999998863 389999 999887664 433 1344444455678999999999
Q ss_pred eC----ccc------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 79 VK----PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 79 v~----~~~------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
.. |.. ++++.+.+..+ .|+..++..+++..
T Consensus 81 ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvtNPvd 126 (326)
T 3pqe_A 81 AGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATNPVD 126 (326)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH
T ss_pred cccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcCChHH
Confidence 72 111 22333445444 57777777766544
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1e-06 Score=75.35 Aligned_cols=97 Identities=13% Similarity=0.203 Sum_probs=67.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH----HH------cCceeecCchhhhccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF----ES------IGVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l----~~------~g~~~~~~~~~~~~~aDivil~ 78 (272)
+.+||+|||+|.+|.+++..|...|.. .+|.++ |+++++++.. .. ..+.+..+..+++++||+||++
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~--~ei~L~-Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ 81 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIV--DELVII-DLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVIC 81 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSC--SEEEEE-CSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC--CEEEEE-eCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEEC
Confidence 557999999999999999999988742 389999 9998765431 11 1234444567779999999999
Q ss_pred eCcc----------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 79 VKPQ----------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 79 v~~~----------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
.+.. .+.++.+.+.++ .|+.+++..+++..
T Consensus 82 ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv~ 127 (317)
T 3d0o_A 82 AGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNPVD 127 (317)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCcHH
Confidence 8321 133444555555 57777776655443
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.51 E-value=7.6e-07 Score=76.97 Aligned_cols=88 Identities=15% Similarity=0.243 Sum_probs=66.8
Q ss_pred CCCCCeEEEEccc-HHHHHHHHHHHhC--CCCCCCcE-EEEeCCCHHHHHHHHH-cCc-eeecCchhhhc--cCCEEEEe
Q 024121 7 PAESFILGFIGAG-KMAESIAKGVAKS--GVLPPDRI-CTAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFS 78 (272)
Q Consensus 7 ~~~~~~IgiIG~G-~mG~~la~~l~~~--g~~~~~~V-~v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDivil~ 78 (272)
+.+.+||||||+| .+|...+..|.+. ++ ++ .++ ++++++++.+.+ .|+ .++.|.+++++ +.|+|++|
T Consensus 15 ~~~~irvgiIG~G~~~g~~~~~~l~~~~~~~----~lvav~-d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~ 89 (340)
T 1zh8_A 15 PLRKIRLGIVGCGIAARELHLPALKNLSHLF----EITAVT-SRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLT 89 (340)
T ss_dssp -CCCEEEEEECCSHHHHHTHHHHHHTTTTTE----EEEEEE-CSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEEC
T ss_pred CCCceeEEEEecCHHHHHHHHHHHHhCCCce----EEEEEE-cCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEe
Confidence 3456799999999 8999999999875 34 55 567 999999988776 676 77888888876 58999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEE
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
+|+....++..... ..|+-|+
T Consensus 90 tp~~~H~~~~~~al---~aGkhVl 110 (340)
T 1zh8_A 90 LPVELNLPFIEKAL---RKGVHVI 110 (340)
T ss_dssp CCGGGHHHHHHHHH---HTTCEEE
T ss_pred CCchHHHHHHHHHH---HCCCcEE
Confidence 99887666654433 3455444
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.6e-07 Score=80.57 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=65.9
Q ss_pred CCCCeEEEEcccH---HHHHHHHHHHhCC-CCCCCcEE--EEeCCCHHHHHHHHH-cCc---eeecCchhhhcc------
Q 024121 8 AESFILGFIGAGK---MAESIAKGVAKSG-VLPPDRIC--TAVHSNLKRRDAFES-IGV---KVLSDNNAVVEY------ 71 (272)
Q Consensus 8 ~~~~~IgiIG~G~---mG~~la~~l~~~g-~~~~~~V~--v~~~r~~~~~~~l~~-~g~---~~~~~~~~~~~~------ 71 (272)
|+.+||||||+|. ||...+..+...+ + ++. ++ ++++++++.+.+ .|+ .++.|.++++++
T Consensus 35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~----~lva~v~-d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~ 109 (417)
T 3v5n_A 35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHY----ELVAGAL-SSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKN 109 (417)
T ss_dssp CCCEEEEEESCC--CHHHHHHHHHHHHTSCE----EEEEEEC-CSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTT
T ss_pred CCcceEEEEcCCCchHHHHHHHHHHhhCCCc----EEEEEEe-CCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCC
Confidence 4557999999999 9999888877665 3 654 67 999999888776 677 577888888875
Q ss_pred -CCEEEEeeCcccHHHHHHHhchhcCCCCEEE
Q 024121 72 -SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 72 -aDivil~v~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
.|+|++|+|+....++..... ..|+-|+
T Consensus 110 ~vD~V~I~tp~~~H~~~~~~al---~aGkhVl 138 (417)
T 3v5n_A 110 GIEAVAIVTPNHVHYAAAKEFL---KRGIHVI 138 (417)
T ss_dssp CCSEEEECSCTTSHHHHHHHHH---TTTCEEE
T ss_pred CCcEEEECCCcHHHHHHHHHHH---hCCCeEE
Confidence 899999999887666654433 4555555
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.50 E-value=3e-07 Score=79.13 Aligned_cols=108 Identities=18% Similarity=0.251 Sum_probs=77.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~ 86 (272)
...+++||||+|++|+.+++.+..-|. +|.+| ++.+.. ...+.++.. .+.++++++||+|.+++|-. ..+.
T Consensus 139 l~g~tvGIiG~G~IG~~va~~~~~fg~----~v~~~-d~~~~~--~~~~~~~~~-~~l~ell~~sDivslh~Plt~~T~~ 210 (334)
T 3kb6_A 139 LNRLTLGVIGTGRIGSRVAMYGLAFGM----KVLCY-DVVKRE--DLKEKGCVY-TSLDELLKESDVISLHVPYTKETHH 210 (334)
T ss_dssp GGGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCH--HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTTTT
T ss_pred ecCcEEEEECcchHHHHHHHhhcccCc----eeeec-CCccch--hhhhcCcee-cCHHHHHhhCCEEEEcCCCChhhcc
Confidence 345799999999999999999999998 99999 886532 233456554 57889999999999999843 3333
Q ss_pred HH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhCCCCEE
Q 024121 87 VA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTGHSRFI 123 (272)
Q Consensus 87 v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~~~~~~ 123 (272)
++ .+....++++.++|+++-| +..+.|.+.+...++.
T Consensus 211 li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~ 250 (334)
T 3kb6_A 211 MINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFS 250 (334)
T ss_dssp CBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEE
T ss_pred CcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCce
Confidence 33 2233456789999988644 3456666666533443
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=98.49 E-value=4.5e-07 Score=82.03 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=63.0
Q ss_pred CCCCeEEEEcc----cHHHHHHHHHHHhC--CCCCCCcEE-EEeCCCHHHHHHHHH-cCc---eeecCchhhhc--cCCE
Q 024121 8 AESFILGFIGA----GKMAESIAKGVAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGV---KVLSDNNAVVE--YSDV 74 (272)
Q Consensus 8 ~~~~~IgiIG~----G~mG~~la~~l~~~--g~~~~~~V~-v~~~r~~~~~~~l~~-~g~---~~~~~~~~~~~--~aDi 74 (272)
|+.+||||||+ |.||...+..|.+. ++ +|. ++ ++++++++.+.+ .|+ ..+.|.+++++ +.|+
T Consensus 37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~----~lvav~-d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~ 111 (479)
T 2nvw_A 37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQF----QIVALY-NPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDM 111 (479)
T ss_dssp GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTE----EEEEEE-CSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSE
T ss_pred CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCe----EEEEEE-eCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCE
Confidence 45679999999 99999999999885 55 654 67 999999888776 566 47788888885 6899
Q ss_pred EEEeeCcccHHHHHHHh
Q 024121 75 VVFSVKPQVVKDVAMQI 91 (272)
Q Consensus 75 vil~v~~~~~~~v~~~l 91 (272)
|++|+|+....+++...
T Consensus 112 V~I~tp~~~H~~~~~~a 128 (479)
T 2nvw_A 112 IVVSVKVPEHYEVVKNI 128 (479)
T ss_dssp EEECSCHHHHHHHHHHH
T ss_pred EEEcCCcHHHHHHHHHH
Confidence 99999987655555443
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-06 Score=77.52 Aligned_cols=91 Identities=13% Similarity=0.118 Sum_probs=71.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-H-
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V- 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~- 84 (272)
+...++++|||+|.+|..+++.+...|. +|.++ ++++.+.......|+.+. +.+++++.+|+|++++.... +
T Consensus 244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa----~Viv~-d~dp~~a~~A~~~G~~vv-~LeElL~~ADIVv~atgt~~lI~ 317 (464)
T 3n58_A 244 MMAGKVAVVCGYGDVGKGSAQSLAGAGA----RVKVT-EVDPICALQAAMDGFEVV-TLDDAASTADIVVTTTGNKDVIT 317 (464)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHTTCEEC-CHHHHGGGCSEEEECCSSSSSBC
T ss_pred cccCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-eCCcchhhHHHhcCceec-cHHHHHhhCCEEEECCCCccccC
Confidence 4566899999999999999999999998 99999 999876655555787764 67899999999999875433 2
Q ss_pred HHHHHHhchhcCCCCEEEEEcCC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
.+.+.. ++++.++|++.-+
T Consensus 318 ~e~l~~----MK~GAILINvGRg 336 (464)
T 3n58_A 318 IDHMRK----MKDMCIVGNIGHF 336 (464)
T ss_dssp HHHHHH----SCTTEEEEECSSS
T ss_pred HHHHhc----CCCCeEEEEcCCC
Confidence 344433 5788889887543
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-07 Score=79.37 Aligned_cols=94 Identities=13% Similarity=0.148 Sum_probs=67.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCc---eee--cCchhhhccCCEEEEeeCc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGV---KVL--SDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~---~~~--~~~~~~~~~aDivil~v~~ 81 (272)
...+++.|||+|.||.+++..|.+.|. .+|++| +|++++++.+.+ .+. .+. .+..+.+.++|+||.|+|.
T Consensus 139 l~~~~vlVlGaGg~g~aia~~L~~~G~---~~V~v~-nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~ 214 (297)
T 2egg_A 139 LDGKRILVIGAGGGARGIYFSLLSTAA---ERIDMA-NRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSV 214 (297)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC---SEEEEE-CSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCT
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCC
Confidence 356899999999999999999999985 289999 999999888876 333 222 2345667899999999986
Q ss_pred ccHHHH--HHHh-chhcCCCCEEEEEcC
Q 024121 82 QVVKDV--AMQI-RPLLSRKKLLVSVAA 106 (272)
Q Consensus 82 ~~~~~v--~~~l-~~~l~~~~~iis~~~ 106 (272)
.....+ . .+ ...++++.++++++.
T Consensus 215 ~~~~~~~~~-~i~~~~l~~~~~v~D~~y 241 (297)
T 2egg_A 215 GMHPRVEVQ-PLSLERLRPGVIVSDIIY 241 (297)
T ss_dssp TCSSCCSCC-SSCCTTCCTTCEEEECCC
T ss_pred CCCCCCCCC-CCCHHHcCCCCEEEEcCC
Confidence 532110 0 01 123567777887643
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-06 Score=78.80 Aligned_cols=88 Identities=17% Similarity=0.213 Sum_probs=64.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcE-EEEeCCCHHHHHHHHH----cC---ceeec----Cchhhhc--c
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKS-GVLPPDRI-CTAVHSNLKRRDAFES----IG---VKVLS----DNNAVVE--Y 71 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V-~v~~~r~~~~~~~l~~----~g---~~~~~----~~~~~~~--~ 71 (272)
+|+.+||||||+|.||...+..|.+. ++ +| .++ ++++++++.+.+ .| ..+.. |.+++++ +
T Consensus 17 ~~~~~rvgiIG~G~~g~~h~~~l~~~~~~----~lvav~-d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~ 91 (444)
T 2ixa_A 17 NPKKVRIAFIAVGLRGQTHVENMARRDDV----EIVAFA-DPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKN 91 (444)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHTCTTE----EEEEEE-CSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTT
T ss_pred CCCCceEEEEecCHHHHHHHHHHHhCCCc----EEEEEE-eCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCC
Confidence 45668999999999999999988874 44 65 467 999998877654 35 46666 8888887 5
Q ss_pred CCEEEEeeCcccHHHHHHHhchhcCCCCEEE
Q 024121 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 72 aDivil~v~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
.|+|++|+|+....++.... +..|+-|+
T Consensus 92 vD~V~i~tp~~~h~~~~~~a---l~aGkhV~ 119 (444)
T 2ixa_A 92 IDAVFVSSPWEWHHEHGVAA---MKAGKIVG 119 (444)
T ss_dssp CCEEEECCCGGGHHHHHHHH---HHTTCEEE
T ss_pred CCEEEEcCCcHHHHHHHHHH---HHCCCeEE
Confidence 89999999988765555443 23455444
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1e-06 Score=74.38 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=65.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH----HHHH------cC--ceeecCchhhhccCCEEEEe
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES------IG--VKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~------~g--~~~~~~~~~~~~~aDivil~ 78 (272)
|||+|||+|.||++++..|...|+. .+|.+| |+++++++ ++.. .. +..+.+ .+++++||+||++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~--~~v~L~-D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVVia 76 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDV--DEIALV-DIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVT 76 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCC--SEEEEE-CSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC--CeEEEE-ECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEEC
Confidence 7999999999999999999998863 379999 99998764 1221 12 223345 7789999999999
Q ss_pred eC----ccc------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 79 VK----PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 79 v~----~~~------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
.. |.. ++++.+.+..+ .|+.+++-.++++.
T Consensus 77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvsNPvd 122 (294)
T 1oju_A 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMD 122 (294)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHH
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCcch
Confidence 72 211 22333455555 67778887766544
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-06 Score=74.23 Aligned_cols=97 Identities=14% Similarity=0.196 Sum_probs=68.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---------cCceeecCchhhhccCCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---------IGVKVLSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---------~g~~~~~~~~~~~~~aDivil~v 79 (272)
+.+||+|||+|.+|.+++..|...++. .+|.++ |+++++++.... ..+.+..+..+++++||+||++.
T Consensus 4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~--~el~L~-Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~a 80 (318)
T 1ez4_A 4 NHQKVVLVGDGAVGSSYAFAMAQQGIA--EEFVIV-DVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITA 80 (318)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCC--CEEEEE-eCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECC
Confidence 448999999999999999999988763 489999 999887664222 13344445677799999999997
Q ss_pred Ccc----------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 KPQ----------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 ~~~----------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
+.. .+.++.+.+..+ .|+..++..++++.
T Consensus 81 g~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~ 125 (318)
T 1ez4_A 81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVD 125 (318)
T ss_dssp CC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCcHH
Confidence 421 133444555555 57777776666544
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.6e-07 Score=80.39 Aligned_cols=91 Identities=11% Similarity=0.101 Sum_probs=70.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~~ 85 (272)
....++++|+|+|.+|..+++.+...|. +|.++ ++++.+.......|..+ .+.++++..+|+|++|.- ...+.
T Consensus 217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga----~Viv~-D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~atgt~~lI~ 290 (435)
T 3gvp_A 217 MFGGKQVVVCGYGEVGKGCCAALKAMGS----IVYVT-EIDPICALQACMDGFRL-VKLNEVIRQVDIVITCTGNKNVVT 290 (435)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSCSBC
T ss_pred eecCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-eCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEECCCCcccCC
Confidence 3456899999999999999999999998 99999 99987765555577665 467899999999999843 22232
Q ss_pred -HHHHHhchhcCCCCEEEEEcCC
Q 024121 86 -DVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 86 -~v~~~l~~~l~~~~~iis~~~~ 107 (272)
+.+.. ++++.+++++..+
T Consensus 291 ~e~l~~----MK~gailINvgrg 309 (435)
T 3gvp_A 291 REHLDR----MKNSCIVCNMGHS 309 (435)
T ss_dssp HHHHHH----SCTTEEEEECSST
T ss_pred HHHHHh----cCCCcEEEEecCC
Confidence 44443 5688888887544
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-06 Score=76.40 Aligned_cols=86 Identities=17% Similarity=0.260 Sum_probs=63.2
Q ss_pred CCCCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeecCchhhhcc--CCEEEEeeC
Q 024121 7 PAESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEY--SDVVVFSVK 80 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~--aDivil~v~ 80 (272)
|++.+||||||+|.||.. .+..+.+. ++ +|. ++ ++++++++ .+ .++.++.|.++++.+ .|+|++|+|
T Consensus 4 M~~~~rvgiiG~G~~g~~~~~~~~~~~~~~----~l~av~-d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 76 (352)
T 3kux_A 4 MADKIKVGLLGYGYASKTFHAPLIMGTPGL----ELAGVS-SSDASKVH--ADWPAIPVVSDPQMLFNDPSIDLIVIPTP 76 (352)
T ss_dssp TTCCEEEEEECCSHHHHHTHHHHHHTSTTE----EEEEEE-CSCHHHHH--TTCSSCCEESCHHHHHHCSSCCEEEECSC
T ss_pred ccCCceEEEECCCHHHHHHHHHHHhhCCCc----EEEEEE-CCCHHHHH--hhCCCCceECCHHHHhcCCCCCEEEEeCC
Confidence 455689999999999997 67777665 44 665 67 99998765 23 467778899998875 899999999
Q ss_pred cccHHHHHHHhchhcCCCCEEE
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~ii 102 (272)
+....++..... ..|+-|+
T Consensus 77 ~~~H~~~~~~al---~aGkhV~ 95 (352)
T 3kux_A 77 NDTHFPLAQSAL---AAGKHVV 95 (352)
T ss_dssp TTTHHHHHHHHH---HTTCEEE
T ss_pred hHHHHHHHHHHH---HCCCcEE
Confidence 887666554432 3455454
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=5e-07 Score=78.93 Aligned_cols=103 Identities=14% Similarity=0.279 Sum_probs=70.1
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEee
Q 024121 4 FPIPAESFILGFIGAGKMAESIAKGVAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~la~~l~~~--g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v 79 (272)
||......||+|||+| +|...+..+.+. ++ ++. ++ +|++++++++.+ .|+...+|.++++++.|++++|+
T Consensus 1 M~~~~~~~rv~VvG~G-~g~~h~~a~~~~~~~~----elvav~-~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~ 74 (372)
T 4gmf_A 1 MPSASPKQRVLIVGAK-FGEMYLNAFMQPPEGL----ELVGLL-AQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVV 74 (372)
T ss_dssp ------CEEEEEECST-TTHHHHHTTSSCCTTE----EEEEEE-CCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECC
T ss_pred CCCCCCCCEEEEEehH-HHHHHHHHHHhCCCCe----EEEEEE-CCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEEC
Confidence 4555567899999999 898777777654 34 665 56 999999988877 89988899999999999999999
Q ss_pred CcccH----HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHH
Q 024121 80 KPQVV----KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW 116 (272)
Q Consensus 80 ~~~~~----~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~ 116 (272)
|.... .++..+. +..|+-|+. -++++.++.++.
T Consensus 75 p~~~h~~~~~~~a~~a---l~aGkhVl~-EKPl~~~ea~~l 111 (372)
T 4gmf_A 75 RSTVAGGAGTQLARHF---LARGVHVIQ-EHPLHPDDISSL 111 (372)
T ss_dssp C--CTTSHHHHHHHHH---HHTTCEEEE-ESCCCHHHHHHH
T ss_pred CCcccchhHHHHHHHH---HHcCCcEEE-ecCCCHHHHHHH
Confidence 87643 3343332 345665553 366776655444
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-06 Score=74.83 Aligned_cols=94 Identities=20% Similarity=0.190 Sum_probs=64.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---c-------C--ceeecCchhhhccCCEEEE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I-------G--VKVLSDNNAVVEYSDVVVF 77 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~-------g--~~~~~~~~~~~~~aDivil 77 (272)
+|||+|||+|.||.+++..|...|+. +|.++ |+++++++.... . . +..+.+. +.+++||+||+
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~g~~---~v~L~-Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~ 76 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAKELG---DIVLL-DIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVV 76 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCS---EEEEE-CSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCC---eEEEE-eCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEE
Confidence 37999999999999999999998863 59999 998876643221 1 2 2233555 67899999999
Q ss_pred eeC-c---------------ccHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 78 SVK-P---------------QVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 78 ~v~-~---------------~~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
++. | ..+.++.+.+..+ .|+.+++-.++++.
T Consensus 77 a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~tNPv~ 123 (309)
T 1ur5_A 77 TSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVNNPLD 123 (309)
T ss_dssp CCCC--------CHHHHHHHHHHHHHHHHHGGG-CTTCEEEECCSSHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEcCCchH
Confidence 972 1 1123455566665 47777765555443
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.6e-06 Score=73.63 Aligned_cols=96 Identities=16% Similarity=0.263 Sum_probs=66.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH---HHHHHH---cCceeecCchhhhccCCEEEEeeCc-
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR---RDAFES---IGVKVLSDNNAVVEYSDVVVFSVKP- 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~---~~~l~~---~g~~~~~~~~~~~~~aDivil~v~~- 81 (272)
.++||+|||+|.||..++..++..|+. .+|.++ |++++. ..++.. ..+..+.+. +.+++||+||++...
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~--~ev~L~-Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~ 88 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAKGIA--DRLVLL-DLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSL 88 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-cCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCC
Confidence 357999999999999999999988863 489999 998742 223322 235555666 668999999999711
Q ss_pred --------------ccHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 82 --------------QVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 82 --------------~~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
..+.+++.++..+. |+.+++..++++.
T Consensus 89 ~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~ 129 (303)
T 2i6t_A 89 GSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVE 129 (303)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHH
Confidence 12456666777664 7778776767543
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.7e-06 Score=74.10 Aligned_cols=99 Identities=16% Similarity=0.271 Sum_probs=66.8
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH----HHHH------cCcee--ecCchhhhccC
Q 024121 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES------IGVKV--LSDNNAVVEYS 72 (272)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~------~g~~~--~~~~~~~~~~a 72 (272)
|-.|+.+||+|||+|.||.+++..|...|+ . +|.+| |+++++++ ++.. ....+ +.+. +++++|
T Consensus 2 ~~~m~~~kI~viGaG~vG~~~a~~l~~~~~-~--~v~L~-Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~a 76 (324)
T 3gvi_A 2 PGSMARNKIALIGSGMIGGTLAHLAGLKEL-G--DVVLF-DIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGA 76 (324)
T ss_dssp ----CCCEEEEECCSHHHHHHHHHHHHTTC-C--EEEEE-CSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTC
T ss_pred CCCCcCCEEEEECCCHHHHHHHHHHHhCCC-C--eEEEE-eCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCC
Confidence 334677899999999999999999999887 2 89999 99987653 2222 13333 3454 779999
Q ss_pred CEEEEeeC-c---c------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 73 DVVVFSVK-P---Q------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 73 Divil~v~-~---~------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|+||++.. | . .++++.+.+..+ .|+.+++..+++..
T Consensus 77 DiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvtNPvd 128 (324)
T 3gvi_A 77 DVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVICITNPLD 128 (324)
T ss_dssp SEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHH
T ss_pred CEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHH-CCCeEEEecCCCcH
Confidence 99999972 1 1 123344455555 47778777766544
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=7.7e-07 Score=67.18 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=69.5
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
..+|+|||+ |++|..++++|.+.|| +|+ +.++.. +.+ .|+.+..+..++....|++++++|++.+.
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~----~v~---~Vnp~~-~~i--~G~~~y~sl~~l~~~vDlvvi~vp~~~~~ 91 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGY----DVY---PVNPKY-EEV--LGRKCYPSVLDIPDKIEVVDLFVKPKLTM 91 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTC----EEE---EECTTC-SEE--TTEECBSSGGGCSSCCSEEEECSCHHHHH
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCC----EEE---EECCCC-CeE--CCeeccCCHHHcCCCCCEEEEEeCHHHHH
Confidence 468999999 7999999999999999 754 445543 111 58888888888888899999999999999
Q ss_pred HHHHHhchhcCCCCEEEEEcCCCCHHHHHHHh
Q 024121 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~ 117 (272)
++++++... ....+|+ ..+...+.+.+..
T Consensus 92 ~vv~~~~~~-gi~~i~~--~~g~~~~~l~~~a 120 (144)
T 2d59_A 92 EYVEQAIKK-GAKVVWF--QYNTYNREASKKA 120 (144)
T ss_dssp HHHHHHHHH-TCSEEEE--CTTCCCHHHHHHH
T ss_pred HHHHHHHHc-CCCEEEE--CCCchHHHHHHHH
Confidence 999876653 2333433 3555555554444
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-06 Score=76.07 Aligned_cols=96 Identities=18% Similarity=0.258 Sum_probs=66.0
Q ss_pred CCCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeecCchhhhc--cCCEEEEeeCc
Q 024121 8 AESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDivil~v~~ 81 (272)
++++||||||+|.||.. .+..+.+. ++ +|. ++ +++++++. .+ .++..+.|.+++++ +.|+|++|+|+
T Consensus 5 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~~~~~~--~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 77 (364)
T 3e82_A 5 NNTINIALIGYGFVGKTFHAPLIRSVPGL----NLAFVA-SRDEEKVK--RDLPDVTVIASPEAAVQHPDVDLVVIASPN 77 (364)
T ss_dssp --CEEEEEECCSHHHHHTHHHHHHTSTTE----EEEEEE-CSCHHHHH--HHCTTSEEESCHHHHHTCTTCSEEEECSCG
T ss_pred CCcceEEEECCCHHHHHHHHHHHhhCCCe----EEEEEE-cCCHHHHH--hhCCCCcEECCHHHHhcCCCCCEEEEeCCh
Confidence 34579999999999997 56666654 44 665 67 99998765 23 46778889999887 78999999998
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEcCC--CCHHHHH
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVAAG--VKLKDLQ 114 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~~~--~~~~~l~ 114 (272)
....++.... +..|+-|+. -++ .+.+..+
T Consensus 78 ~~H~~~~~~a---l~aGk~Vl~-EKPla~~~~e~~ 108 (364)
T 3e82_A 78 ATHAPLARLA---LNAGKHVVV-DKPFTLDMQEAR 108 (364)
T ss_dssp GGHHHHHHHH---HHTTCEEEE-CSCSCSSHHHHH
T ss_pred HHHHHHHHHH---HHCCCcEEE-eCCCcCCHHHHH
Confidence 8766655443 335555553 343 3444433
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=98.43 E-value=4.6e-07 Score=81.10 Aligned_cols=77 Identities=13% Similarity=0.212 Sum_probs=61.6
Q ss_pred CCCeEEEEcc----cHHHHHHHHHHHhC--CCCCCCcE-EEEeCCCHHHHHHHHH-cCce---eecCchhhhc--cCCEE
Q 024121 9 ESFILGFIGA----GKMAESIAKGVAKS--GVLPPDRI-CTAVHSNLKRRDAFES-IGVK---VLSDNNAVVE--YSDVV 75 (272)
Q Consensus 9 ~~~~IgiIG~----G~mG~~la~~l~~~--g~~~~~~V-~v~~~r~~~~~~~l~~-~g~~---~~~~~~~~~~--~aDiv 75 (272)
+.+||||||+ |.||...+..|.+. ++ +| .++ ++++++++.+.+ .|+. .+.+.+++++ +.|+|
T Consensus 19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~----~lvav~-d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V 93 (438)
T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQF----QITALY-SPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMI 93 (438)
T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTE----EEEEEE-CSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEE
T ss_pred CCCEEEEEcccCCCChHHHHHHHHHHhcCCCe----EEEEEE-eCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEE
Confidence 3479999999 99999999999886 55 65 477 999999888776 5654 7788888886 68999
Q ss_pred EEeeCcccHHHHHHH
Q 024121 76 VFSVKPQVVKDVAMQ 90 (272)
Q Consensus 76 il~v~~~~~~~v~~~ 90 (272)
++|+|+....+++..
T Consensus 94 ~i~tp~~~H~~~~~~ 108 (438)
T 3btv_A 94 VIAIQVASHYEVVMP 108 (438)
T ss_dssp EECSCHHHHHHHHHH
T ss_pred EEeCCcHHHHHHHHH
Confidence 999998765555544
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.7e-07 Score=79.08 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=65.4
Q ss_pred CCeEEEEcccHHHHHHHHH-HHhC--CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeecCchhhhcc--CCEEEEeeCcc
Q 024121 10 SFILGFIGAGKMAESIAKG-VAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEY--SDVVVFSVKPQ 82 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~-l~~~--g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~--aDivil~v~~~ 82 (272)
++||||||+|.||..+... ++.. ++ +|. ++ +|++++.+...+ .++..+.|.++++.+ .|+|++|+|+.
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~----~l~av~-d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 76 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDSW----HVAHIF-RRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD 76 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTTE----EEEEEE-CSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGG
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCCe----EEEEEE-cCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChH
Confidence 4799999999999964444 4332 44 665 67 999877654444 477888899998875 89999999988
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcCC--CCHHHHH
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAAG--VKLKDLQ 114 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~~--~~~~~l~ 114 (272)
...++.... +..|+.|+. -++ .+.+..+
T Consensus 77 ~h~~~~~~a---l~aGk~Vl~-EKP~a~~~~e~~ 106 (345)
T 3f4l_A 77 SHFEYAKRA---LEAGKNVLV-EKPFTPTLAQAK 106 (345)
T ss_dssp GHHHHHHHH---HHTTCEEEE-CSSSCSSHHHHH
T ss_pred HHHHHHHHH---HHcCCcEEE-eCCCCCCHHHHH
Confidence 766655443 345665553 243 3444433
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.41 E-value=8.5e-07 Score=79.28 Aligned_cols=113 Identities=12% Similarity=0.246 Sum_probs=76.5
Q ss_pred CCeEEEEcccHH-HHHHHHHHHhC--CCCCCCcEEEEeCCCH--HHHHHHH--------Hc--C--ceeecCchhhhccC
Q 024121 10 SFILGFIGAGKM-AESIAKGVAKS--GVLPPDRICTAVHSNL--KRRDAFE--------SI--G--VKVLSDNNAVVEYS 72 (272)
Q Consensus 10 ~~~IgiIG~G~m-G~~la~~l~~~--g~~~~~~V~v~~~r~~--~~~~~l~--------~~--g--~~~~~~~~~~~~~a 72 (272)
.+||+|||+|.+ |.+++..|.+. +. +..+|.+| |+++ ++++... .. . +..+.|..+++++|
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l-~~~ev~L~-Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gA 84 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHEL-PVGELWLV-DIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGA 84 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTC-CEEEEEEE-CCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCC-CCCEEEEE-EcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCC
Confidence 479999999999 88888888873 22 23389999 9999 7755421 11 2 23345666889999
Q ss_pred CEEEEeeCccc------------------------------------HHHHHHHhchhcCCCCEEEEEcCCCCH--HHHH
Q 024121 73 DVVVFSVKPQV------------------------------------VKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQ 114 (272)
Q Consensus 73 Divil~v~~~~------------------------------------~~~v~~~l~~~l~~~~~iis~~~~~~~--~~l~ 114 (272)
|+||++++... +.++++.+..+ .|+..++..++++.. ..+.
T Consensus 85 D~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~-~P~a~ii~~tNPvdivT~a~~ 163 (450)
T 1s6y_A 85 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTNPAGMVTEAVL 163 (450)
T ss_dssp SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHH
T ss_pred CEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeCCcHHHHHHHHH
Confidence 99999997532 34555556555 588888888777654 3344
Q ss_pred HHhCCCCEEEE
Q 024121 115 EWTGHSRFIRV 125 (272)
Q Consensus 115 ~~~~~~~~~~~ 125 (272)
+..+..++++.
T Consensus 164 k~~p~~rViG~ 174 (450)
T 1s6y_A 164 RYTKQEKVVGL 174 (450)
T ss_dssp HHCCCCCEEEC
T ss_pred HhCCCCCEEEe
Confidence 44454467664
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.2e-06 Score=73.04 Aligned_cols=95 Identities=19% Similarity=0.230 Sum_probs=66.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---c------CceeecCchhhhccCCEEEEeeC-
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I------GVKVLSDNNAVVEYSDVVVFSVK- 80 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~------g~~~~~~~~~~~~~aDivil~v~- 80 (272)
|||+|||+|.+|.+++..|...+. ..+|.++ |+++++++.... . .+.+..+..+++++||+||++.+
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~--~~el~L~-Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~ 77 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGV--AREVVLV-DLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGV 77 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC--CSEEEEE-CSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--CCEEEEE-eCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCC
Confidence 699999999999999999998874 2489999 999887664222 1 23443345677999999999873
Q ss_pred ccc---------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 81 PQV---------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 81 ~~~---------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
+.. ++++.+.+..+ .|+..++..++++.
T Consensus 78 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~ 120 (310)
T 2xxj_A 78 AQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVD 120 (310)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH
T ss_pred CCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEecCchH
Confidence 211 33444555555 57777776666544
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.2e-06 Score=73.07 Aligned_cols=95 Identities=20% Similarity=0.269 Sum_probs=65.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH----HHHH------cCceee-cCchhhhccCCEEEEee
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES------IGVKVL-SDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~------~g~~~~-~~~~~~~~~aDivil~v 79 (272)
|||+|||+|.||++++..|...|+. .+|.++ |+++++++ ++.. ....+. .+..+.+++||+||++.
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~--~el~l~-D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~a 77 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVA--KEVVMV-DIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITA 77 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCS--SEEEEE-CSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC--CEEEEE-eCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECC
Confidence 7999999999999999999988862 389999 99987654 2222 134443 35567789999999997
Q ss_pred Ccc----------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 KPQ----------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 ~~~----------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
... .++++.+.+..+ .|+.+++..+++..
T Consensus 78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvd 122 (314)
T 3nep_X 78 GLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIVVANPLD 122 (314)
T ss_dssp CC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECCSSHH
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEecCCchh
Confidence 311 122333445554 57777777766544
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=3.5e-06 Score=72.08 Aligned_cols=96 Identities=14% Similarity=0.037 Sum_probs=68.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH----HH---c----CceeecCchhhhccCCEEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF----ES---I----GVKVLSDNNAVVEYSDVVVF 77 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l----~~---~----g~~~~~~~~~~~~~aDivil 77 (272)
..+||+|||+|.||++++..+...|+. .+|.++ |+++++++.. .. . .+....+.++ +++||+||+
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~--~ev~L~-Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIi 95 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLA--DEVALV-DVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVI 95 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCC--SEEEEE-CSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC--CeEEEE-ECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEE
Confidence 458999999999999999999998863 389999 9998766532 21 0 1233456655 899999999
Q ss_pred ee--Cc-------c-------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 78 SV--KP-------Q-------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 78 ~v--~~-------~-------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
+. |. + .++++.+++..+ .|+.+++..+++..
T Consensus 96 taG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvtNPvd 142 (330)
T 3ldh_A 96 TAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHPELGT 142 (330)
T ss_dssp CCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH
T ss_pred eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCCCccH
Confidence 86 21 1 134555666666 68888887777544
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-06 Score=74.10 Aligned_cols=97 Identities=15% Similarity=0.240 Sum_probs=66.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH----HHHH------cCceee-cCchhhhccCCEEE
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES------IGVKVL-SDNNAVVEYSDVVV 76 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~------~g~~~~-~~~~~~~~~aDivi 76 (272)
|.++||+|||+|.||++++..|...|+ . +|.++ |+++++++ ++.. ....+. .+..+++++||+||
T Consensus 3 m~~~kI~iiGaG~vG~~~a~~l~~~~~-~--~v~l~-Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVI 78 (321)
T 3p7m_A 3 MARKKITLVGAGNIGGTLAHLALIKQL-G--DVVLF-DIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVI 78 (321)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTC-C--EEEEE-CSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-c--eEEEE-eCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEE
Confidence 456899999999999999999999886 2 89999 99987754 2222 123332 23357789999999
Q ss_pred EeeC----cc------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 77 FSVK----PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 77 l~v~----~~------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
++.. |. .++++.+.+..+ .|+.+++..++++.
T Consensus 79 i~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvd 126 (321)
T 3p7m_A 79 VTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHN-CPNAFVICITNPLD 126 (321)
T ss_dssp ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHH
T ss_pred EcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHH-CCCcEEEEecCchH
Confidence 9962 11 123444555555 47777776655543
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-07 Score=78.97 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=65.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC-ceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-VKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g-~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
...+++.|||+|.||.+++..|.+.|. .+|+++ +|++++++++.+.. .....+..+.+.++|+||-|+|......
T Consensus 115 l~~k~vlvlGaGg~g~aia~~L~~~G~---~~v~v~-~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~ 190 (277)
T 3don_A 115 IEDAYILILGAGGASKGIANELYKIVR---PTLTVA-NRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGN 190 (277)
T ss_dssp GGGCCEEEECCSHHHHHHHHHHHTTCC---SCCEEE-CSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC------
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCC
Confidence 346789999999999999999999986 379999 99999887765421 1122345566789999999998643222
Q ss_pred HHHHh-chhcCCCCEEEEEcC
Q 024121 87 VAMQI-RPLLSRKKLLVSVAA 106 (272)
Q Consensus 87 v~~~l-~~~l~~~~~iis~~~ 106 (272)
+-..+ ...++++.+++|++.
T Consensus 191 ~~~~l~~~~l~~~~~V~D~vY 211 (277)
T 3don_A 191 TDSVISLNRLASHTLVSDIVY 211 (277)
T ss_dssp -CCSSCCTTCCSSCEEEESCC
T ss_pred CcCCCCHHHcCCCCEEEEecC
Confidence 10001 234678888888753
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=98.36 E-value=2.9e-06 Score=73.78 Aligned_cols=84 Identities=12% Similarity=0.168 Sum_probs=61.0
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHHc-CceeecCchhhhc--cCCEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFESI-GVKVLSDNNAVVE--YSDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~aDivil~v~~~ 82 (272)
+++||||||+|.||.. .+..+.+. ++ +|. ++ ++++++.. .+. ++..+.|.+++++ +.|+|++|+|+.
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 76 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDVLDEY----QISKIM-TSRTEEVK--RDFPDAEVVHELEEITNDPAIELVIVTTPSG 76 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTTCTTE----EEEEEE-CSCHHHHH--HHCTTSEEESSTHHHHTCTTCCEEEECSCTT
T ss_pred CcceEEEEccCHHHHHHHHHHHhhCCCe----EEEEEE-cCCHHHHH--hhCCCCceECCHHHHhcCCCCCEEEEcCCcH
Confidence 4579999999999997 56666554 44 664 66 99987632 233 6788889999887 689999999988
Q ss_pred cHHHHHHHhchhcCCCCEEE
Q 024121 83 VVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~ii 102 (272)
...++..... ..|+-|+
T Consensus 77 ~H~~~~~~al---~aGkhVl 93 (358)
T 3gdo_A 77 LHYEHTMACI---QAGKHVV 93 (358)
T ss_dssp THHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHH---HcCCeEE
Confidence 7666654433 3455555
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.7e-06 Score=71.31 Aligned_cols=97 Identities=19% Similarity=0.250 Sum_probs=68.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH-----cCceeecCchhhhccCCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES-----IGVKVLSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~-----~g~~~~~~~~~~~~~aDivil~v 79 (272)
..+||+|||+|.||++++..|...|+. .++.++ |+++++++. +.. .++.+..+..+.+++||+||++.
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~--~el~l~-D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~a 84 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIA--QEIGIV-DIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITA 84 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC--CeEEEE-eCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECC
Confidence 457999999999999999999998863 389999 999887653 222 13455555567799999999986
Q ss_pred C-cc---------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 K-PQ---------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 ~-~~---------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
. |+ .++++.+.+..+ .|+.+++..+++..
T Consensus 85 g~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~ilvvtNPvd 129 (326)
T 3vku_A 85 GAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPVD 129 (326)
T ss_dssp CCC----------------CHHHHHHHHHTT-TCCSEEEECSSSHH
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEccCchH
Confidence 2 11 123444455554 46777776666543
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.6e-07 Score=77.72 Aligned_cols=88 Identities=16% Similarity=0.173 Sum_probs=64.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC--cee-ec---CchhhhccCCEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG--VKV-LS---DNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g--~~~-~~---~~~~~~~~aDivil~v~~~ 82 (272)
..|||.|||+|.+|+.++..|.+ .+ +|.++ +|+.++++++.+.. +.+ .. +..++++++|+||.|+|+.
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~-~~----~v~~~-~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~ 88 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKD-EF----DVYIG-DVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTT-TS----EEEEE-ESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred CccEEEEECCCHHHHHHHHHHhc-CC----CeEEE-EcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence 35899999999999999998866 46 89999 99999888876532 111 11 2345678999999999998
Q ss_pred cHHHHHHHhchhcCCCCEEEEEc
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
.-..++... +..++-++|++
T Consensus 89 ~~~~v~~~~---~~~g~~yvD~s 108 (365)
T 3abi_A 89 LGFKSIKAA---IKSKVDMVDVS 108 (365)
T ss_dssp GHHHHHHHH---HHHTCEEEECC
T ss_pred ccchHHHHH---HhcCcceEeee
Confidence 666665443 34566777764
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.2e-06 Score=75.06 Aligned_cols=92 Identities=13% Similarity=0.163 Sum_probs=64.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCC---C-CCcE-EEEeCCCHHHHHHHHH-cCc-eeecCchhhhc--cCCEEEE
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVL---P-PDRI-CTAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVF 77 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~---~-~~~V-~v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDivil 77 (272)
.|+..||||||+|.||...+..+.+...+ . ..+| .++ ++++++++.+.+ .|+ .+..|.+++++ +.|+|++
T Consensus 3 ~M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~-d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I 81 (390)
T 4h3v_A 3 AMTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLC-GRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDV 81 (390)
T ss_dssp -CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEE-CSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEE
T ss_pred CCCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEE-cCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEE
Confidence 34556899999999999888777653210 0 0144 466 999999988876 675 56788888886 4899999
Q ss_pred eeCcccHHHHHHHhchhcCCCCEEE
Q 024121 78 SVKPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 78 ~v~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
|+|+....++..... ..|+-|+
T Consensus 82 ~tP~~~H~~~~~~al---~aGkhVl 103 (390)
T 4h3v_A 82 CTPGDSHAEIAIAAL---EAGKHVL 103 (390)
T ss_dssp CSCGGGHHHHHHHHH---HTTCEEE
T ss_pred eCChHHHHHHHHHHH---HcCCCce
Confidence 999887665554432 3455444
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-06 Score=77.09 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=67.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee------ecCchhhhccCCEEEEeeC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV------LSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~------~~~~~~~~~~aDivil~v~ 80 (272)
...++|+|||+|.+|..+++.+...|. +|+++ +|++++.+.+.+ .|..+ ..+..+.+.++|+||.|++
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga----~V~~~-d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~ 240 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGMGA----TVTVL-DINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVL 240 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCC
Confidence 346799999999999999999999998 99999 999998877766 55432 1234566789999999884
Q ss_pred -ccc-HHHH-HHHhchhcCCCCEEEEEc
Q 024121 81 -PQV-VKDV-AMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 81 -~~~-~~~v-~~~l~~~l~~~~~iis~~ 105 (272)
+.. ...+ ..+..+.++++.++|++.
T Consensus 241 ~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 241 VPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred cCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 221 1111 122334467888888774
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.4e-06 Score=73.93 Aligned_cols=91 Identities=22% Similarity=0.238 Sum_probs=61.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC----CCCCCcEE-EEeCCCHHHHHHHHH-cCc-eeecCchhhhc--cCCEEEEe
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSG----VLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFS 78 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g----~~~~~~V~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDivil~ 78 (272)
|+..||||||+|.||..-+..+.+.. ..+..+|. ++ |+++++++++.+ .|+ .++.|.+++++ +.|+|++|
T Consensus 23 MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~-d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~Ia 101 (393)
T 4fb5_A 23 MKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLA-EANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVT 101 (393)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEE-CC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEEC
T ss_pred CCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEE-CCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEEC
Confidence 35568999999999997776664321 00112554 66 999999988877 676 57788888876 57999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEE
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
+|+....++..... ..|+-|+
T Consensus 102 tP~~~H~~~a~~al---~aGkhVl 122 (393)
T 4fb5_A 102 TPNQFHAEMAIAAL---EAGKHVW 122 (393)
T ss_dssp SCGGGHHHHHHHHH---HTTCEEE
T ss_pred CChHHHHHHHHHHH---hcCCeEE
Confidence 99887665554433 3455544
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.32 E-value=6.1e-07 Score=74.86 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=69.0
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHH-----HHHHH--cCceeecCchhhhccCCEEEE
Q 024121 8 AESFILGFIG-AGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRR-----DAFES--IGVKVLSDNNAVVEYSDVVVF 77 (272)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~-----~~l~~--~g~~~~~~~~~~~~~aDivil 77 (272)
|+++||+|+| +|+||+.+++.+.+. ++ ++. ++ +|+.... ..+.. .|+.+..+.++++.++|+||-
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~----eLv~~~-d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVID 79 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDA----TLVGAL-DRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLID 79 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTE----EEEEEB-CCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEE
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEE-EecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEE
Confidence 5678999999 899999999998865 33 555 45 8764321 11111 256677888888889999999
Q ss_pred eeCcccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHH
Q 024121 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQ 114 (272)
Q Consensus 78 ~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~ 114 (272)
+++|+...+.+.... ..+.-+|..+.|.+.+.++
T Consensus 80 fT~p~a~~~~~~~al---~~G~~vVigTTG~s~~~~~ 113 (272)
T 4f3y_A 80 FTLPEGTLVHLDAAL---RHDVKLVIGTTGFSEPQKA 113 (272)
T ss_dssp CSCHHHHHHHHHHHH---HHTCEEEECCCCCCHHHHH
T ss_pred cCCHHHHHHHHHHHH---HcCCCEEEECCCCCHHHHH
Confidence 999888777666544 3455566556778776543
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.6e-06 Score=73.16 Aligned_cols=94 Identities=15% Similarity=0.194 Sum_probs=69.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHHcCceeecCchhhhc--cCCEEEEeeCcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDivil~v~~~~~ 84 (272)
+.+||+|+|+ |+||...++++.+.|+ ++. .. |+.... + ...|+.+..+.+++.+ +.|++++++|+...
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~~g~----~~V~~V-~p~~~g-~--~~~G~~vy~sl~el~~~~~~D~viI~tP~~~~ 77 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIAYGT----KMVGGV-TPGKGG-T--THLGLPVFNTVREAVAATGATASVIYVPAPFC 77 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTC----EEEEEE-CTTCTT-C--EETTEEEESSHHHHHHHHCCCEEEECCCGGGH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----eEEEEe-CCCccc-c--eeCCeeccCCHHHHhhcCCCCEEEEecCHHHH
Confidence 4579999998 9999999999999888 633 44 543210 1 1268888888888887 89999999999998
Q ss_pred HHHHHHhchhcCCCCEEEEEcCCCCHHH
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAGVKLKD 112 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~~~~~~ 112 (272)
.+++.+.... .-+.+|..+.|++.++
T Consensus 78 ~~~~~ea~~~--Gi~~iVi~t~G~~~~~ 103 (288)
T 2nu8_A 78 KDSILEAIDA--GIKLIITITEGIPTLD 103 (288)
T ss_dssp HHHHHHHHHT--TCSEEEECCCCCCHHH
T ss_pred HHHHHHHHHC--CCCEEEEECCCCCHHH
Confidence 8888776542 1234455667887754
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=8.6e-07 Score=78.30 Aligned_cols=87 Identities=15% Similarity=0.234 Sum_probs=66.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeec--------------------------
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS-------------------------- 63 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~-------------------------- 63 (272)
..+|+|||+|.+|...++.+...|. +|+++ ||++++.+.+.+.|.....
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga----~V~v~-D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 246 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGA----IVRAF-DTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEM 246 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHH
Confidence 5789999999999999999999998 99999 9999988877777765431
Q ss_pred -CchhhhccCCEEEEe--eCc----ccH-HHHHHHhchhcCCCCEEEEEc
Q 024121 64 -DNNAVVEYSDVVVFS--VKP----QVV-KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 64 -~~~~~~~~aDivil~--v~~----~~~-~~v~~~l~~~l~~~~~iis~~ 105 (272)
+..+.+..+|+||.| +|. ..+ ++.+. .++++.+||++.
T Consensus 247 ~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~----~mk~g~vIVdva 292 (401)
T 1x13_A 247 ELFAAQAKEVDIIVTTALIPGKPAPKLITREMVD----SMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHH----TSCTTCEEEETT
T ss_pred HHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHh----cCCCCcEEEEEc
Confidence 244667789999999 442 112 33443 356888999874
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=1e-06 Score=74.03 Aligned_cols=92 Identities=15% Similarity=0.232 Sum_probs=65.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC----ceeecCchhhhccCCEEEEeeCcc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----VKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g----~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
...+++.|+|+|.+|.+++..|.+.|. .+|+++ +|++++++++.+ .+ +... +.+++..++|+||-|+|..
T Consensus 124 l~~k~vlvlGaGg~g~aia~~L~~~G~---~~v~v~-~R~~~~a~~la~~~~~~~~~~~~-~~~~l~~~aDiIInaTp~g 198 (281)
T 3o8q_A 124 LKGATILLIGAGGAARGVLKPLLDQQP---ASITVT-NRTFAKAEQLAELVAAYGEVKAQ-AFEQLKQSYDVIINSTSAS 198 (281)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTCC---SEEEEE-ESSHHHHHHHHHHHGGGSCEEEE-EGGGCCSCEEEEEECSCCC
T ss_pred ccCCEEEEECchHHHHHHHHHHHhcCC---CeEEEE-ECCHHHHHHHHHHhhccCCeeEe-eHHHhcCCCCEEEEcCcCC
Confidence 456899999999999999999999994 289999 999999888776 22 3332 4455557899999999865
Q ss_pred cHHHHHHHh-chhcCCCCEEEEEc
Q 024121 83 VVKDVAMQI-RPLLSRKKLLVSVA 105 (272)
Q Consensus 83 ~~~~v~~~l-~~~l~~~~~iis~~ 105 (272)
...+. ..+ ...++++.+++|+.
T Consensus 199 m~~~~-~~l~~~~l~~~~~V~Dlv 221 (281)
T 3o8q_A 199 LDGEL-PAIDPVIFSSRSVCYDMM 221 (281)
T ss_dssp C-----CSCCGGGEEEEEEEEESC
T ss_pred CCCCC-CCCCHHHhCcCCEEEEec
Confidence 43221 011 12356777788775
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=7.1e-07 Score=74.73 Aligned_cols=91 Identities=10% Similarity=0.175 Sum_probs=60.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c----CceeecCchhhhc-cCCEEEEeeCc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----GVKVLSDNNAVVE-YSDVVVFSVKP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~----g~~~~~~~~~~~~-~aDivil~v~~ 81 (272)
...+++.|+|+|.||.+++..|.+.|. +|++| +|++++++++.+ . .+.. .+.+++.+ ++|+||.|+|.
T Consensus 117 ~~~~~vlvlGaGg~g~a~a~~L~~~G~----~v~v~-~R~~~~a~~l~~~~~~~~~~~~-~~~~~~~~~~~DivIn~t~~ 190 (272)
T 1p77_A 117 RPNQHVLILGAGGATKGVLLPLLQAQQ----NIVLA-NRTFSKTKELAERFQPYGNIQA-VSMDSIPLQTYDLVINATSA 190 (272)
T ss_dssp CTTCEEEEECCSHHHHTTHHHHHHTTC----EEEEE-ESSHHHHHHHHHHHGGGSCEEE-EEGGGCCCSCCSEEEECCCC
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHccccCCeEE-eeHHHhccCCCCEEEECCCC
Confidence 356799999999999999999999998 99999 999999888865 2 2222 23334334 89999999986
Q ss_pred ccHHHHHHHhc-hhcCCCCEEEEEc
Q 024121 82 QVVKDVAMQIR-PLLSRKKLLVSVA 105 (272)
Q Consensus 82 ~~~~~v~~~l~-~~l~~~~~iis~~ 105 (272)
.....+. .+. ..++++.+++++.
T Consensus 191 ~~~~~~~-~i~~~~l~~~~~v~D~~ 214 (272)
T 1p77_A 191 GLSGGTA-SVDAEILKLGSAFYDMQ 214 (272)
T ss_dssp --------CCCHHHHHHCSCEEESC
T ss_pred CCCCCCC-CCCHHHcCCCCEEEEee
Confidence 5432221 111 1134556666653
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.5e-06 Score=72.24 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=65.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH-HHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK-DVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~-~v~ 88 (272)
.+++.|||+|.+|.+++..|.+.|. +|+++ +|++++++.+.+.++... +.+++ .++|+||-|+|..... ..+
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~----~v~V~-nRt~~ka~~la~~~~~~~-~~~~l-~~~DiVInaTp~Gm~~~~~l 190 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGL----QVSVL-NRSSRGLDFFQRLGCDCF-MEPPK-SAFDLIINATSASLHNELPL 190 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCTTHHHHHHHTCEEE-SSCCS-SCCSEEEECCTTCCCCSCSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHCCCeEe-cHHHh-ccCCEEEEcccCCCCCCCCC
Confidence 5789999999999999999999997 99999 999999988876666543 33443 4899999999754210 011
Q ss_pred --HHhchhcCCCCEEEEEcC
Q 024121 89 --MQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 89 --~~l~~~l~~~~~iis~~~ 106 (272)
+.+...++++.+++|+.-
T Consensus 191 ~~~~l~~~l~~~~~v~D~vY 210 (269)
T 3phh_A 191 NKEVLKGYFKEGKLAYDLAY 210 (269)
T ss_dssp CHHHHHHHHHHCSEEEESCC
T ss_pred ChHHHHhhCCCCCEEEEeCC
Confidence 111223457788888753
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=6.6e-06 Score=72.86 Aligned_cols=90 Identities=11% Similarity=0.198 Sum_probs=65.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCc--hh----h-hccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NA----V-VEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~--~~----~-~~~aDivil~v~ 80 (272)
..++|.|+|+|.+|..+++.|.+.|+ +|++. ++++++++.+.+.|+.+. .|. .+ + +.++|+||++++
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g~----~vvvI-d~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSGV----KMVVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 77 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTC----CEEEE-ECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC----CEEEE-ECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence 45789999999999999999999999 99999 999999999888776532 221 12 2 568999999998
Q ss_pred cccHHHHHHHhchhcCCCCEEEE
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis 103 (272)
++.....+-.....+.|+..||.
T Consensus 78 ~~~~n~~i~~~ar~~~p~~~Iia 100 (413)
T 3l9w_A 78 DPQTNLQLTEMVKEHFPHLQIIA 100 (413)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEE
T ss_pred ChHHHHHHHHHHHHhCCCCeEEE
Confidence 76544333333333456644443
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.4e-06 Score=74.42 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=61.3
Q ss_pred CCCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHHc-CceeecCchhhhcc--CCEEEEeeCc
Q 024121 8 AESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFESI-GVKVLSDNNAVVEY--SDVVVFSVKP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~--aDivil~v~~ 81 (272)
|+++||||||+|.||.. .+..+.+. ++ +|. ++ +++++++. .+. ++..+.|.++++++ .|+|++|+|+
T Consensus 3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 75 (362)
T 3fhl_A 3 LEIIKTGLAAFGMSGQVFHAPFISTNPHF----ELYKIV-ERSKELSK--ERYPQASIVRSFKELTEDPEIDLIVVNTPD 75 (362)
T ss_dssp CCCEEEEESCCSHHHHHTTHHHHHHCTTE----EEEEEE-CSSCCGGG--TTCTTSEEESCSHHHHTCTTCCEEEECSCG
T ss_pred CCceEEEEECCCHHHHHHHHHHHhhCCCe----EEEEEE-cCCHHHHH--HhCCCCceECCHHHHhcCCCCCEEEEeCCh
Confidence 35679999999999997 66666664 44 665 66 99987632 224 67788899999876 8999999998
Q ss_pred ccHHHHHHHhchhcCCCCEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~ii 102 (272)
....++..... ..|+-|+
T Consensus 76 ~~H~~~~~~al---~aGkhVl 93 (362)
T 3fhl_A 76 NTHYEYAGMAL---EAGKNVV 93 (362)
T ss_dssp GGHHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHHH---HCCCeEE
Confidence 87666554433 3455444
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.26 E-value=6.4e-06 Score=70.23 Aligned_cols=96 Identities=19% Similarity=0.235 Sum_probs=63.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC--HHHHHHH----HH------cCceee-cCchhhhccCCEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRDAF----ES------IGVKVL-SDNNAVVEYSDVV 75 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~--~~~~~~l----~~------~g~~~~-~~~~~~~~~aDiv 75 (272)
+.+||+|||+|.||++++..+...|+ .+|.++ |++ +++.+.. .. ....+. .+..+.+++||+|
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~---~~v~l~-D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvV 82 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKEL---ADVVLV-DIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVV 82 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC---CEEEEE-CCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC---CeEEEE-eccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEE
Confidence 45799999999999999999999886 389999 999 4443321 11 122232 2335668999999
Q ss_pred EEee--C--cc------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 76 VFSV--K--PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 76 il~v--~--~~------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|++. | |. .++++.+.+..+ .|+.+++..+++..
T Consensus 83 Iiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vlvvsNPvd 131 (315)
T 3tl2_A 83 VITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIVVLTNPVD 131 (315)
T ss_dssp EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHH
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEECCChHH
Confidence 9997 2 21 123444455555 57777777766543
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.26 E-value=5.6e-06 Score=70.45 Aligned_cols=92 Identities=16% Similarity=0.266 Sum_probs=65.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H------cCcee--ecCchhhhccCCEEEEee
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S------IGVKV--LSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~------~g~~~--~~~~~~~~~~aDivil~v 79 (272)
||+|||+|.||.+++..+...|+ .+|.++ |+++++++... . ....+ +.+. +++++||+||++.
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l---~el~L~-Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~a 75 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGY---DDLLLI-ARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTA 75 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTC---SCEEEE-CSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECC
T ss_pred CEEEECcCHHHHHHHHHHHhCCC---CEEEEE-cCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeC
Confidence 69999999999999999988876 369999 99987664321 1 13333 3454 6789999999996
Q ss_pred Cccc----------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 KPQV----------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 ~~~~----------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
+... ++++++++..+ .|+..++..++++.
T Consensus 76 g~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~ 120 (308)
T 2d4a_B 76 GIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIVVITTNPVD 120 (308)
T ss_dssp SCCCCSSCCTHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCchH
Confidence 4222 55666677666 47776666666443
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=4.3e-07 Score=73.08 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=53.3
Q ss_pred CCeEEEEcccHHHHHHHHH--HHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce--eecCchhhhccCCEEEEeeCcccHH
Q 024121 10 SFILGFIGAGKMAESIAKG--VAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~--l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
.++|+|||+|++|.++++. +...|+ ++..+.|+++++..... .|+. ..++..+++++.|++++|+|.....
T Consensus 85 ~~rV~IIGAG~~G~~La~~~~~~~~g~----~iVg~~D~dp~k~g~~i-~gv~V~~~~dl~eli~~~D~ViIAvPs~~~~ 159 (215)
T 2vt3_A 85 MTDVILIGVGNLGTAFLHYNFTKNNNT----KISMAFDINESKIGTEV-GGVPVYNLDDLEQHVKDESVAILTVPAVAAQ 159 (215)
T ss_dssp --CEEEECCSHHHHHHHHCC------C----CEEEEEESCTTTTTCEE-TTEEEEEGGGHHHHCSSCCEEEECSCHHHHH
T ss_pred CCEEEEEccCHHHHHHHHHHhcccCCc----EEEEEEeCCHHHHHhHh-cCCeeechhhHHHHHHhCCEEEEecCchhHH
Confidence 4689999999999999994 334566 66543399987654322 2333 3456677776669999999988877
Q ss_pred HHHHHhch
Q 024121 86 DVAMQIRP 93 (272)
Q Consensus 86 ~v~~~l~~ 93 (272)
++.+.+..
T Consensus 160 ei~~~l~~ 167 (215)
T 2vt3_A 160 SITDRLVA 167 (215)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=3.1e-06 Score=72.14 Aligned_cols=91 Identities=12% Similarity=0.157 Sum_probs=61.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHh-C-CCCCCCcEE-EEeCCCHHH-HHHHH-HcCcee-ecCchhhh-----ccCCEEE
Q 024121 8 AESFILGFIGAGKMAESIAKGVAK-S-GVLPPDRIC-TAVHSNLKR-RDAFE-SIGVKV-LSDNNAVV-----EYSDVVV 76 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~-~-g~~~~~~V~-v~~~r~~~~-~~~l~-~~g~~~-~~~~~~~~-----~~aDivi 76 (272)
++.+||+|||+|.+|..+++.+.+ . +. ++. ++ ++++++ ..++. +.|+.. ..+.++++ .+.|+||
T Consensus 2 ~~~irVaIIG~G~iG~~~~~~l~~~~~~~----elvav~-d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~ 76 (312)
T 1nvm_B 2 NQKLKVAIIGSGNIGTDLMIKVLRNAKYL----EMGAMV-GIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVF 76 (312)
T ss_dssp CSCEEEEEECCSHHHHHHHHHHHHHCSSE----EEEEEE-CSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEE
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHhhCcCe----EEEEEE-eCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEE
Confidence 356799999999999999998865 2 33 444 56 999877 45544 367653 34445554 3589999
Q ss_pred EeeCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 77 l~v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
+|+|++...+........ ++|+.|++.
T Consensus 77 ~atp~~~h~~~a~~al~a-~~Gk~Vi~e 103 (312)
T 1nvm_B 77 DATSASAHVQNEALLRQA-KPGIRLIDL 103 (312)
T ss_dssp ECSCHHHHHHHHHHHHHH-CTTCEEEEC
T ss_pred ECCChHHHHHHHHHHHHh-CCCCEEEEc
Confidence 999977666655544322 237777764
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.23 E-value=7.2e-06 Score=70.66 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=53.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH-----cCceeecCchhhhccCCEEEE
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES-----IGVKVLSDNNAVVEYSDVVVF 77 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~-----~g~~~~~~~~~~~~~aDivil 77 (272)
|.++||+|||+ |.+|++++..+...|.. .+|.++ |+++++++. +.. ..+....+..+++++||+||+
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~--~evvLi-Di~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvi 82 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLT--PNLCLY-DPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVS 82 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCC--SCEEEE-CSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCC--CEEEEE-eCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEE
Confidence 35689999998 99999999999988842 289999 999876653 333 134445666778999999999
Q ss_pred ee
Q 024121 78 SV 79 (272)
Q Consensus 78 ~v 79 (272)
+.
T Consensus 83 ta 84 (343)
T 3fi9_A 83 SG 84 (343)
T ss_dssp CC
T ss_pred cc
Confidence 96
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.8e-06 Score=73.11 Aligned_cols=94 Identities=19% Similarity=0.285 Sum_probs=65.9
Q ss_pred CCCCCeEEEEcccHHHH-HHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHHcCceeecCchhhhcc---CCEEEEeeC
Q 024121 7 PAESFILGFIGAGKMAE-SIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVEY---SDVVVFSVK 80 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~-~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---aDivil~v~ 80 (272)
+|+.+||||||+|.||. ..+..+.+. +. +|. ++ +|++++ .|+....|.++++++ .|+|++|+|
T Consensus 22 ~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~----~lvav~-d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 22 SMSPINLAIVGVGKIVRDQHLPSIAKNANF----KLVATA-SRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp CCCCEEEEEECCSHHHHHTHHHHHHHCTTE----EEEEEE-CSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSC
T ss_pred cCCCceEEEEecCHHHHHHHHHHHHhCCCe----EEEEEE-eCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCC
Confidence 45668999999999998 688888875 34 654 56 998653 578888898888765 899999999
Q ss_pred cccHHHHHHHhchhcCCCCEEEEEcCC--CCHHHHHH
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSVAAG--VKLKDLQE 115 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~~~~--~~~~~l~~ 115 (272)
+....++..... ..|+-|+ +-++ .+.++.++
T Consensus 91 ~~~H~~~~~~al---~aGkhVl-~EKP~a~~~~e~~~ 123 (330)
T 4ew6_A 91 PQYRYEAAYKAL---VAGKHVF-LEKPPGATLSEVAD 123 (330)
T ss_dssp HHHHHHHHHHHH---HTTCEEE-ECSSSCSSHHHHHH
T ss_pred cHHHHHHHHHHH---HcCCcEE-EeCCCCCCHHHHHH
Confidence 877666554433 3455555 2343 34444433
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.23 E-value=3.1e-06 Score=70.74 Aligned_cols=91 Identities=10% Similarity=0.182 Sum_probs=63.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC----ceeecCchhhh-ccCCEEEEeeCc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----VKVLSDNNAVV-EYSDVVVFSVKP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g----~~~~~~~~~~~-~~aDivil~v~~ 81 (272)
...+++.|+|+|.||.+++..|.+.|. +|+++ +|++++++.+.+ .+ +.. .+..++. .++|+||.|++.
T Consensus 117 l~~k~vlViGaGg~g~a~a~~L~~~G~----~V~v~-~R~~~~~~~la~~~~~~~~~~~-~~~~~~~~~~~DivVn~t~~ 190 (271)
T 1nyt_A 117 RPGLRILLIGAGGASRGVLLPLLSLDC----AVTIT-NRTVSRAEELAKLFAHTGSIQA-LSMDELEGHEFDLIINATSS 190 (271)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHHTGGGSSEEE-CCSGGGTTCCCSEEEECCSC
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCC----EEEEE-ECCHHHHHHHHHHhhccCCeeE-ecHHHhccCCCCEEEECCCC
Confidence 356799999999999999999999998 99999 999998887765 22 222 2333433 489999999975
Q ss_pred ccHHHHHHHhc-hhcCCCCEEEEEc
Q 024121 82 QVVKDVAMQIR-PLLSRKKLLVSVA 105 (272)
Q Consensus 82 ~~~~~v~~~l~-~~l~~~~~iis~~ 105 (272)
....++ ..+. ..++++.+++++.
T Consensus 191 ~~~~~~-~~i~~~~l~~~~~v~D~~ 214 (271)
T 1nyt_A 191 GISGDI-PAIPSSLIHPGIYCYDMF 214 (271)
T ss_dssp GGGTCC-CCCCGGGCCTTCEEEESC
T ss_pred CCCCCC-CCCCHHHcCCCCEEEEec
Confidence 443111 0111 1245666666653
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=98.22 E-value=4.4e-06 Score=72.41 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=58.5
Q ss_pred CCeEEEEcccHHHH-HHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH----cCceeecCchhhhcc--CCEEEEeeC
Q 024121 10 SFILGFIGAGKMAE-SIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES----IGVKVLSDNNAVVEY--SDVVVFSVK 80 (272)
Q Consensus 10 ~~~IgiIG~G~mG~-~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~----~g~~~~~~~~~~~~~--aDivil~v~ 80 (272)
++||||||+|.||. ..+..+.+. ++ +|. ++ +++ +.+++.+ .++..+.+.++++.+ .|+|++|+|
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp 74 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMIRETL----EVKTIF-DLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTP 74 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTE----EEEEEE-CTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSC
T ss_pred eeEEEEEccCHHHHHHHHHHHhhCCCe----EEEEEE-CCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCC
Confidence 47999999999998 455555553 34 664 66 888 3444433 477888899998875 899999999
Q ss_pred cccHHHHHHHhchhcCCCCEEE
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~ii 102 (272)
+....++..... ..|+-|+
T Consensus 75 ~~~h~~~~~~al---~aGk~Vl 93 (349)
T 3i23_A 75 AHTHYDLAKQAI---LAGKSVI 93 (349)
T ss_dssp GGGHHHHHHHHH---HTTCEEE
T ss_pred cHHHHHHHHHHH---HcCCEEE
Confidence 887666654433 3455555
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.3e-06 Score=75.24 Aligned_cols=88 Identities=11% Similarity=0.220 Sum_probs=66.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee--cC----------------------
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SD---------------------- 64 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~---------------------- 64 (272)
...+|+|||+|.+|...++.+...|. +|+++ ||++++.+.+.+.|.... ..
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga----~V~~~-d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~ 245 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGA----VVMAT-DVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK 245 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCSTTHHHHHHTTCEECCC-----------------------C
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHh
Confidence 45799999999999999999999998 89999 999988877777776543 11
Q ss_pred -----chhhhccCCEEEEee--Ccc----cH-HHHHHHhchhcCCCCEEEEEc
Q 024121 65 -----NNAVVEYSDVVVFSV--KPQ----VV-KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 65 -----~~~~~~~aDivil~v--~~~----~~-~~v~~~l~~~l~~~~~iis~~ 105 (272)
..+.+.++|+||.|+ |.. .+ ++.+ ..++++.+|+++.
T Consensus 246 ~~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l----~~mk~g~vivdva 294 (384)
T 1l7d_A 246 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMV----TKMKPGSVIIDLA 294 (384)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHH----TTSCTTCEEEETT
T ss_pred hhHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHH----hcCCCCCEEEEEe
Confidence 445677899999998 421 12 3333 3457888888864
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-05 Score=68.73 Aligned_cols=99 Identities=13% Similarity=0.160 Sum_probs=67.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHHc-----C--ceeecCchhhhccCCE
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FESI-----G--VKVLSDNNAVVEYSDV 74 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~~-----g--~~~~~~~~~~~~~aDi 74 (272)
.....+||+|||+|.||.+++..|+..|+ ..+|.++ |+++++++. +... . +....+.+ .+++||+
T Consensus 15 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~--~~el~L~-Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDi 90 (331)
T 4aj2_A 15 EQVPQNKITVVGVGAVGMACAISILMKDL--ADELALV-DVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKL 90 (331)
T ss_dssp --CCSSEEEEECCSHHHHHHHHHHHHTTC--CSEEEEE-CSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEE
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHhCCC--CceEEEE-eCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCE
Confidence 34567899999999999999999998885 3479999 999876654 3221 1 12234544 5899999
Q ss_pred EEEee--Cc-------c-------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 75 VVFSV--KP-------Q-------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 75 vil~v--~~-------~-------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
||++. |. + .++++.+.+..+ .|+..++..+++..
T Consensus 91 Vvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPvd 140 (331)
T 4aj2_A 91 VIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVSNPVD 140 (331)
T ss_dssp EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH
T ss_pred EEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChHH
Confidence 99986 22 1 123344555565 67878887777554
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=4.6e-06 Score=72.46 Aligned_cols=90 Identities=19% Similarity=0.262 Sum_probs=65.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhc-cCCEEEEeeCcccH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVE-YSDVVVFSVKPQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~-~aDivil~v~~~~~ 84 (272)
....++|+|+|+|+||..+++.|.+.|. +|.++ |+++++++++.+ .|+... +..+++. +||+++.|.....+
T Consensus 170 ~L~GktV~V~G~G~VG~~~A~~L~~~Ga----kVvv~-D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~~~~I 243 (364)
T 1leh_A 170 SLEGLAVSVQGLGNVAKALCKKLNTEGA----KLVVT-DVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALGAVL 243 (364)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCSCCB
T ss_pred CCCcCEEEEECchHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccchHHHh
Confidence 3567899999999999999999999999 99999 999998887766 576654 3345544 89999998654443
Q ss_pred H-HHHHHhchhcCCCCEEEEEcCC
Q 024121 85 K-DVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 85 ~-~v~~~l~~~l~~~~~iis~~~~ 107 (272)
. +.++. + ..++|+...++
T Consensus 244 ~~~~~~~----l-g~~iV~e~An~ 262 (364)
T 1leh_A 244 NDFTIPQ----L-KAKVIAGSADN 262 (364)
T ss_dssp STTHHHH----C-CCSEECCSCSC
T ss_pred CHHHHHh----C-CCcEEEeCCCC
Confidence 2 23333 3 34566654443
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.7e-06 Score=73.78 Aligned_cols=103 Identities=15% Similarity=0.189 Sum_probs=69.9
Q ss_pred CCCCeEEEEc-ccHHHHH-HH----HHHHhCCCCC---CCcE----EEEeCCCHHHHHHHHH-cCc-eeecCchhhhcc-
Q 024121 8 AESFILGFIG-AGKMAES-IA----KGVAKSGVLP---PDRI----CTAVHSNLKRRDAFES-IGV-KVLSDNNAVVEY- 71 (272)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~-la----~~l~~~g~~~---~~~V----~v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~~- 71 (272)
++.+|||||| +|.||.. .+ ..+.+.+.+. ...+ .++ +|++++++.+.+ .|+ .++.|.++++++
T Consensus 4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~-~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~ 82 (383)
T 3oqb_A 4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILV-GRSAEKVEALAKRFNIARWTTDLDAALADK 82 (383)
T ss_dssp CEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEE-CSSSHHHHHHHHHTTCCCEESCHHHHHHCS
T ss_pred CceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEE-cCCHHHHHHHHHHhCCCcccCCHHHHhcCC
Confidence 4557999999 9999997 66 6676654210 0011 378 999999988876 787 477888998865
Q ss_pred -CCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCC--CCHHHHHH
Q 024121 72 -SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG--VKLKDLQE 115 (272)
Q Consensus 72 -aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~--~~~~~l~~ 115 (272)
.|+|++|+|+....++.... +..|+-|+ +-++ .+.+..++
T Consensus 83 ~iD~V~i~tp~~~h~~~~~~a---l~~Gk~V~-~EKP~a~~~~~~~~ 125 (383)
T 3oqb_A 83 NDTMFFDAATTQARPGLLTQA---INAGKHVY-CEKPIATNFEEALE 125 (383)
T ss_dssp SCCEEEECSCSSSSHHHHHHH---HTTTCEEE-ECSCSCSSHHHHHH
T ss_pred CCCEEEECCCchHHHHHHHHH---HHCCCeEE-EcCCCCCCHHHHHH
Confidence 89999999987655555443 34556555 3343 34444433
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=4e-06 Score=74.16 Aligned_cols=70 Identities=23% Similarity=0.344 Sum_probs=56.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceee--cCchhhhccCCEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL--SDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~--~~~~~~~~~aDivil~v~~~ 82 (272)
..++|+|||+|.||..+++.+...|. .+|+++ +|++++++.+.+ .|+.+. .+..+.+.++|+||.|++..
T Consensus 166 ~g~~VlIiGaG~iG~~~a~~l~~~G~---~~V~v~-~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~ 238 (404)
T 1gpj_A 166 HDKTVLVVGAGEMGKTVAKSLVDRGV---RAVLVA-NRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP 238 (404)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCC---SEEEEE-CSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS
T ss_pred cCCEEEEEChHHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCC
Confidence 56899999999999999999998886 379999 999988766554 676542 34556678999999999743
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=3.9e-06 Score=72.29 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=59.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCc------------------eeecCchhhhc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGV------------------KVLSDNNAVVE 70 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~------------------~~~~~~~~~~~ 70 (272)
++||||+|+|.||..+++.|.+... .++...++++++++.++.+ .|+ .+..+..+++.
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~~~~---~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~ 78 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTKQDD---MELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE 78 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTT---EEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT
T ss_pred CcEEEEEeEhHHHHHHHHHHhcCCC---CEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhcc
Confidence 3699999999999999999987532 1554433888777665554 442 33456677778
Q ss_pred cCCEEEEeeCcccHHHHHHHhchhcCCCCEEE
Q 024121 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 71 ~aDivil~v~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
++|+|++|+|+....+..... +..|+.|+
T Consensus 79 ~vDvV~~aTp~~~h~~~a~~~---l~aGk~Vi 107 (334)
T 2czc_A 79 KVDIIVDATPGGIGAKNKPLY---EKAGVKAI 107 (334)
T ss_dssp TCSEEEECCSTTHHHHHHHHH---HHHTCEEE
T ss_pred CCCEEEECCCccccHHHHHHH---HHcCCceE
Confidence 999999999987644444432 33455555
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.19 E-value=4.6e-06 Score=72.86 Aligned_cols=93 Identities=18% Similarity=0.250 Sum_probs=65.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee------ecCchhhhccCCEEEEeeC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV------LSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~------~~~~~~~~~~aDivil~v~ 80 (272)
...++|+|+|+|.+|..+++.+...|+ +|+++ +|++++.+.+.+ .|..+ ..+..+.+.++|+||.|++
T Consensus 164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga----~V~~~-d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g 238 (369)
T 2eez_A 164 VAPASVVILGGGTVGTNAAKIALGMGA----QVTIL-DVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVL 238 (369)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCC
Confidence 345899999999999999999999999 99999 999988877765 45432 1233456778999999986
Q ss_pred ccc--HHHH-HHHhchhcCCCCEEEEEc
Q 024121 81 PQV--VKDV-AMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 81 ~~~--~~~v-~~~l~~~l~~~~~iis~~ 105 (272)
... ...+ ..+..+.++++..||++.
T Consensus 239 ~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 239 VPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp -------CCSCHHHHTTSCTTCEEEECC
T ss_pred CCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 432 1111 123334456778888764
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.3e-06 Score=69.29 Aligned_cols=92 Identities=15% Similarity=0.240 Sum_probs=65.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC---ceeecCchhhh-ccCCEEEEeeCcc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG---VKVLSDNNAVV-EYSDVVVFSVKPQ 82 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g---~~~~~~~~~~~-~~aDivil~v~~~ 82 (272)
...+++.|+|+|.+|.+++..|.+.|. .+|+++ +|++++++++.+ .+ +... +.+++. .++|+||-|+|..
T Consensus 118 l~~k~~lvlGaGg~~~aia~~L~~~G~---~~v~i~-~R~~~~a~~la~~~~~~~~~~~-~~~~l~~~~~DivInaTp~g 192 (272)
T 3pwz_A 118 LRNRRVLLLGAGGAVRGALLPFLQAGP---SELVIA-NRDMAKALALRNELDHSRLRIS-RYEALEGQSFDIVVNATSAS 192 (272)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTCC---SEEEEE-CSCHHHHHHHHHHHCCTTEEEE-CSGGGTTCCCSEEEECSSGG
T ss_pred ccCCEEEEECccHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHhccCCeeEe-eHHHhcccCCCEEEECCCCC
Confidence 456899999999999999999999994 289999 999999988876 22 3332 333432 6899999999864
Q ss_pred cHHHHHHHh-chhcCCCCEEEEEc
Q 024121 83 VVKDVAMQI-RPLLSRKKLLVSVA 105 (272)
Q Consensus 83 ~~~~v~~~l-~~~l~~~~~iis~~ 105 (272)
...+. ..+ ...++++.+++|+.
T Consensus 193 m~~~~-~~i~~~~l~~~~~V~Dlv 215 (272)
T 3pwz_A 193 LTADL-PPLPADVLGEAALAYELA 215 (272)
T ss_dssp GGTCC-CCCCGGGGTTCSEEEESS
T ss_pred CCCCC-CCCCHHHhCcCCEEEEee
Confidence 32110 001 12356788888874
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0001 Score=60.56 Aligned_cols=163 Identities=15% Similarity=0.211 Sum_probs=109.7
Q ss_pred CceeecCchhhhccCCEEEEeeCccc-HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHH---hC--CCCEEEEccC-ch
Q 024121 58 GVKVLSDNNAVVEYSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW---TG--HSRFIRVMPN-TP 130 (272)
Q Consensus 58 g~~~~~~~~~~~~~aDivil~v~~~~-~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~---~~--~~~~~~~~p~-~~ 130 (272)
|+.+++|..|+++++|++|+-+|-.. -.++++.+.++++.|.+|.+++. ++.-.+... ++ +..+..+||. .|
T Consensus 128 GVkVtsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCT-ipp~~ly~~le~l~R~DvgIsS~HPaaVP 206 (358)
T 2b0j_A 128 GLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACT-IPTTKFAKIFKDLGREDLNITSYHPGCVP 206 (358)
T ss_dssp TCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSS-SCHHHHHHHHHHTTCTTSEEEECBCSSCT
T ss_pred CcEeecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccC-CCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence 77888888999999999999998654 67889999999999988887654 555444333 33 3557777875 34
Q ss_pred hhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHHH---H-HHcCCCHHHH
Q 024121 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALADG---G-VAAGLPRELA 205 (272)
Q Consensus 131 ~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~---~-~~~Gl~~~~a 205 (272)
.. .|.....- .-.++++.+.+.++.+..|+. +.+..+....+.-+ +....+....++.+. . +-.|-+.+.+
T Consensus 207 gt--~Gq~~~g~-~yAtEEqIeklveLaksa~k~ay~vPAdl~SpV~DM-gs~vTAv~~AGiL~Y~~~vtkIlgAP~~mi 282 (358)
T 2b0j_A 207 EM--KGQVYIAE-GYASEEAVNKLYEIGKIARGKAFKMPANLIGPVCDM-CSAVTATVYAGLLAYRDAVTKILGAPADFA 282 (358)
T ss_dssp TT--CCCEEEEE-SSSCHHHHHHHHHHHHHHHSCEEEEEHHHHHHHHST-THHHHHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred CC--CCcccccc-ccCCHHHHHHHHHHHHHhCCCeEecchhhccchhhh-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 33 44444332 235789999999999999865 77766533332211 222222222333322 2 3478888888
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 024121 206 LGLASQTVLGAASMVTKSGK 225 (272)
Q Consensus 206 ~~~~~~~~~g~~~~~~~~~~ 225 (272)
...+..++...+.++.++|.
T Consensus 283 e~q~~esL~tiasLve~~GI 302 (358)
T 2b0j_A 283 QMMADEALTQIHNLMKEKGI 302 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 88888888888888876554
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.1e-06 Score=70.93 Aligned_cols=100 Identities=14% Similarity=0.222 Sum_probs=67.4
Q ss_pred CCCCCCeEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHH-----HHHHH---HcCceeecCchhhhccCCE
Q 024121 6 IPAESFILGFIG-AGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKR-----RDAFE---SIGVKVLSDNNAVVEYSDV 74 (272)
Q Consensus 6 ~~~~~~~IgiIG-~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~-----~~~l~---~~g~~~~~~~~~~~~~aDi 74 (272)
.|++++||+|+| +|+||+.+++.+.+. ++ ++. ++ +|++.. +..+. ..|+.++.|.++++.++|+
T Consensus 17 ~m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~----eLvg~v-d~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDV 91 (288)
T 3ijp_A 17 QGPGSMRLTVVGANGRMGRELITAIQRRKDV----ELCAVL-VRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEG 91 (288)
T ss_dssp ----CEEEEESSTTSHHHHHHHHHHHTCSSE----EEEEEB-CCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSE
T ss_pred hccCCeEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEE-ecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCE
Confidence 345567999999 899999999988764 34 554 55 876421 11221 2467778888998899999
Q ss_pred EEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCHHHH
Q 024121 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDL 113 (272)
Q Consensus 75 vil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l 113 (272)
||-+++|+...+.+.... ..+.-+|..+.|.+.+.+
T Consensus 92 vIDFT~p~a~~~~~~~~l---~~Gv~vViGTTG~~~e~~ 127 (288)
T 3ijp_A 92 ILDFSQPQASVLYANYAA---QKSLIHIIGTTGFSKTEE 127 (288)
T ss_dssp EEECSCHHHHHHHHHHHH---HHTCEEEECCCCCCHHHH
T ss_pred EEEcCCHHHHHHHHHHHH---HcCCCEEEECCCCCHHHH
Confidence 999998887666555433 345566666677876544
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=8.4e-06 Score=69.55 Aligned_cols=96 Identities=9% Similarity=0.033 Sum_probs=67.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH--cCceeecCchhhh----------ccCCEE
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES--IGVKVLSDNNAVV----------EYSDVV 75 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~--~g~~~~~~~~~~~----------~~aDiv 75 (272)
++||||||+ |.||...+..+.+.+. ++. ++ ++++++.. +.+ .++....+.++++ .+.|+|
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~----~lvav~-d~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V 76 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGG----VLVASL-DPATNVGL-VDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYL 76 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTC----EEEEEE-CSSCCCGG-GGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEE
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCC----EEEEEE-cCCHHHHH-HHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEE
Confidence 589999999 7899999999998776 654 66 99987642 333 3567778888776 579999
Q ss_pred EEeeCcccHHHHHHHhchhcCCCCEEEEEcCC--CCHHHHHH
Q 024121 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG--VKLKDLQE 115 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~~l~~~~~iis~~~~--~~~~~l~~ 115 (272)
++|+|+....++..... ..|+-|+ +-++ .+.+..++
T Consensus 77 ~I~tP~~~H~~~~~~al---~aGkhVl-~EKPla~~~~ea~~ 114 (312)
T 3o9z_A 77 SIASPNHLHYPQIRMAL---RLGANAL-SEKPLVLWPEEIAR 114 (312)
T ss_dssp EECSCGGGHHHHHHHHH---HTTCEEE-ECSSSCSCHHHHHH
T ss_pred EECCCchhhHHHHHHHH---HCCCeEE-EECCCCCCHHHHHH
Confidence 99999887666654433 3455555 2343 34444443
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.10 E-value=9.3e-06 Score=69.45 Aligned_cols=96 Identities=11% Similarity=0.025 Sum_probs=66.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH--cCceeecCchhhh-----------ccCCE
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES--IGVKVLSDNNAVV-----------EYSDV 74 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~--~g~~~~~~~~~~~-----------~~aDi 74 (272)
++||||||+ |.||...+..+.+.+. ++. ++ ++++++. .+.+ .++....+.++++ .+.|+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~----~lvav~-d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~ 76 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGN----CLVSAY-DINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDY 76 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTC----EEEEEE-CSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCE
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCC----EEEEEE-cCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcE
Confidence 589999999 7999999999998776 654 56 9988764 2333 3567778888776 46899
Q ss_pred EEEeeCcccHHHHHHHhchhcCCCCEEEEEcCC--CCHHHHHH
Q 024121 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG--VKLKDLQE 115 (272)
Q Consensus 75 vil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~--~~~~~l~~ 115 (272)
|++|+|+....++..... ..|+-|+ +-++ .+.++.++
T Consensus 77 V~I~tP~~~H~~~~~~al---~aGkhVl-~EKPla~~~~ea~~ 115 (318)
T 3oa2_A 77 VSICSPNYLHYPHIAAGL---RLGCDVI-CEKPLVPTPEMLDQ 115 (318)
T ss_dssp EEECSCGGGHHHHHHHHH---HTTCEEE-ECSSCCSCHHHHHH
T ss_pred EEECCCcHHHHHHHHHHH---HCCCeEE-EECCCcCCHHHHHH
Confidence 999999887666654433 3455554 2233 34444433
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.6e-05 Score=69.39 Aligned_cols=92 Identities=21% Similarity=0.331 Sum_probs=64.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhC--------CCCCCCcEE-EEeCCCHHHHHHHHHcCceeecCchhhhc--cCCE
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKS--------GVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDV 74 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~--------g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDi 74 (272)
.||+..||||||+|.+|+.+++.|.++ |. .-+|. ++ +|++++.+.+. .+...+.|.+++++ +.|+
T Consensus 6 ~MMk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~--~i~lvaV~-d~~~~~~~~~~-~~~~~~~d~~ell~d~diDv 81 (444)
T 3mtj_A 6 QGMKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGR--EIRVVRAA-VRNLDKAEALA-GGLPLTTNPFDVVDDPEIDI 81 (444)
T ss_dssp CSCSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSS--CEEEEEEE-CSCHHHHHHHH-TTCCEESCTHHHHTCTTCCE
T ss_pred hhhCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCC--CEEEEEEE-ECCHHHhhhhc-ccCcccCCHHHHhcCCCCCE
Confidence 456678999999999999998877642 21 11444 56 99998876653 35567788888886 5799
Q ss_pred EEEeeCc-ccHHHHHHHhchhcCCCCEEEEE
Q 024121 75 VVFSVKP-QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 75 vil~v~~-~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|+.|+|+ +...+.+.+ .+..|+-|++.
T Consensus 82 Vve~tp~~~~h~~~~~~---AL~aGKhVvte 109 (444)
T 3mtj_A 82 VVELIGGLEPARELVMQ---AIANGKHVVTA 109 (444)
T ss_dssp EEECCCSSTTHHHHHHH---HHHTTCEEEEC
T ss_pred EEEcCCCchHHHHHHHH---HHHcCCEEEEC
Confidence 9999986 555555433 24567777743
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-05 Score=67.37 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=54.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCccc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~ 83 (272)
.+++.|||+|.+|.+++..|.+.|. .+|+++ ||++++++.+.+ .+.....+.. ..++|+||-|+|...
T Consensus 119 ~~~vlvlGaGgaarav~~~L~~~G~---~~i~v~-nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm 187 (271)
T 1npy_A 119 NAKVIVHGSGGMAKAVVAAFKNSGF---EKLKIY-ARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGM 187 (271)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTC---CCEEEE-CSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTC
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCc
Confidence 4689999999999999999999986 379999 999999988876 4544332222 468999999998654
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=8.4e-06 Score=68.94 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=58.0
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHh----CCCCCCCcEE-EEeCCCHHHHHHHHHcCceeecCchhhhc--cCCEEEE
Q 024121 5 PIPAESFILGFIGAGKMAESIAKGVAK----SGVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVF 77 (272)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~la~~l~~----~g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDivil 77 (272)
+.+++++||||||+|.||...+..+.+ .+. ++. ++ +|+... .+.|+. ..+.+++++ +.|+|++
T Consensus 2 ~~~~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~----~lvav~-d~~~~a----~~~g~~-~~~~~ell~~~~vD~V~i 71 (294)
T 1lc0_A 2 ITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFL----NLIGFV-SRRELG----SLDEVR-QISLEDALRSQEIDVAYI 71 (294)
T ss_dssp CCCCCSEEEEEECCSHHHHHHHHHHTSHHHHTTE----EEEEEE-CSSCCC----EETTEE-BCCHHHHHHCSSEEEEEE
T ss_pred CCCCCcceEEEEEEcHHHHHHHHHHhccccCCCE----EEEEEE-CchHHH----HHcCCC-CCCHHHHhcCCCCCEEEE
Confidence 445567899999999999999988865 233 554 56 876421 124555 367888876 6899999
Q ss_pred eeCcccHHHHHHHhchhcCCCCEEE
Q 024121 78 SVKPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 78 ~v~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
|+|+....++.... +..|+-|+
T Consensus 72 ~tp~~~H~~~~~~a---l~aGkhVl 93 (294)
T 1lc0_A 72 CSESSSHEDYIRQF---LQAGKHVL 93 (294)
T ss_dssp CSCGGGHHHHHHHH---HHTTCEEE
T ss_pred eCCcHhHHHHHHHH---HHCCCcEE
Confidence 99987665555443 33455444
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.2e-05 Score=68.92 Aligned_cols=95 Identities=13% Similarity=0.178 Sum_probs=61.9
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCC--CCCCCcEEEEeCCCHHH--HHHHHHcC----cee---ecCchhhhccCCEEE
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSG--VLPPDRICTAVHSNLKR--RDAFESIG----VKV---LSDNNAVVEYSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g--~~~~~~V~v~~~r~~~~--~~~l~~~g----~~~---~~~~~~~~~~aDivi 76 (272)
+.|||+||| +|.+|.+++..|...| + +|.++ |++++. ..++.... +.. ..+..++++++|+||
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~----ev~l~-Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi 81 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVS----VLHLY-DVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLII 81 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEE----EEEEE-ESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCC----EEEEE-eCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEE
Confidence 457999999 7999999999999888 5 89999 987652 22233311 222 224567789999999
Q ss_pred EeeC--cc--------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 77 FSVK--PQ--------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 77 l~v~--~~--------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
++.. .. .+.++++.+..+ .++..++..++++.
T Consensus 82 ~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~-~p~~~viv~SNPv~ 129 (326)
T 1smk_A 82 VPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKC-CPRAIVNLISNPVN 129 (326)
T ss_dssp ECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHH
T ss_pred EcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEECCchH
Confidence 9973 21 133444555554 36666665555443
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=3.7e-06 Score=70.31 Aligned_cols=99 Identities=20% Similarity=0.209 Sum_probs=65.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHh-CCCCCCCcEE-EEeCCCHHHH--HHH------HHcCceeecCchhhhccCCEEEE
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAK-SGVLPPDRIC-TAVHSNLKRR--DAF------ESIGVKVLSDNNAVVEYSDVVVF 77 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~-~g~~~~~~V~-v~~~r~~~~~--~~l------~~~g~~~~~~~~~~~~~aDivil 77 (272)
..|||+|+|+ |.||+.+++.+.+ .++ ++. ++ ++++++. +.+ ...++.+.++.++++.++|+||-
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~----elva~~-d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVID 78 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGV----QLGAAL-EREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFID 78 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTE----ECCCEE-CCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEE
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEE-ecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEE
Confidence 4579999998 9999999998774 455 665 66 8876431 111 11245566777888889999997
Q ss_pred eeCcccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHH
Q 024121 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (272)
Q Consensus 78 ~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~ 115 (272)
+++|....+.+.... ..+.-+|..+.|.+.+..++
T Consensus 79 ft~p~~~~~~~~~a~---~~G~~vVigTtG~~~e~~~~ 113 (273)
T 1dih_A 79 FTRPEGTLNHLAFCR---QHGKGMVIGTTGFDEAGKQA 113 (273)
T ss_dssp CSCHHHHHHHHHHHH---HTTCEEEECCCCCCHHHHHH
T ss_pred cCChHHHHHHHHHHH---hCCCCEEEECCCCCHHHHHH
Confidence 777776666655443 34555554445777765433
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=3.8e-06 Score=68.87 Aligned_cols=81 Identities=17% Similarity=0.200 Sum_probs=60.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcE-EEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V-~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
.|||+++|+|+||+.+++. . ++ ++ .+| + ++..++ |+.++.|.++++.++|+|+-|-.++.+.+.+
T Consensus 12 ~~rV~i~G~GaIG~~v~~~--~-~l----eLv~v~-~---~k~gel---gv~a~~d~d~lla~pD~VVe~A~~~av~e~~ 77 (253)
T 1j5p_A 12 HMTVLIIGMGNIGKKLVEL--G-NF----EKIYAY-D---RISKDI---PGVVRLDEFQVPSDVSTVVECASPEAVKEYS 77 (253)
T ss_dssp CCEEEEECCSHHHHHHHHH--S-CC----SEEEEE-C---SSCCCC---SSSEECSSCCCCTTCCEEEECSCHHHHHHHH
T ss_pred cceEEEECcCHHHHHHHhc--C-Cc----EEEEEE-e---cccccc---CceeeCCHHHHhhCCCEEEECCCHHHHHHHH
Confidence 4899999999999999997 4 66 65 567 6 333322 7777788888888999999998887777655
Q ss_pred HHhchhcCCCCEEEEEcCC
Q 024121 89 MQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~ 107 (272)
..+ |+.|+-++.++.+
T Consensus 78 ~~i---L~aG~dvv~~S~g 93 (253)
T 1j5p_A 78 LQI---LKNPVNYIIISTS 93 (253)
T ss_dssp HHH---TTSSSEEEECCGG
T ss_pred HHH---HHCCCCEEEcChh
Confidence 554 4677777766544
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-05 Score=67.92 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=69.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHHcCceeecCchhhhc--cCCEEEEeeCcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDivil~v~~~~~ 84 (272)
+.+||+|+|+ |+||..+++++.+.|+ ++. .. ++..... .-.|+.+..+..++.+ ++|++++++|++.+
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g~----~~v~~V-nP~~~g~---~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~~ 77 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYGT----KIVAGV-TPGKGGM---EVLGVPVYDTVKEAVAHHEVDASIIFVPAPAA 77 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTC----EEEEEE-CTTCTTC---EETTEEEESSHHHHHHHSCCSEEEECCCHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcCC----eEEEEE-CCCCCCc---eECCEEeeCCHHHHhhcCCCCEEEEecCHHHH
Confidence 3578999998 9999999999999898 643 44 5442100 1258888888888887 89999999999999
Q ss_pred HHHHHHhchhcCCCCEEEEEcCCCCHHH
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAGVKLKD 112 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~~~~~~ 112 (272)
.+++.+.... .- +.++-.+.|++.+.
T Consensus 78 ~~~~~ea~~~-Gi-~~vVi~t~G~~~~~ 103 (288)
T 1oi7_A 78 ADAALEAAHA-GI-PLIVLITEGIPTLD 103 (288)
T ss_dssp HHHHHHHHHT-TC-SEEEECCSCCCHHH
T ss_pred HHHHHHHHHC-CC-CEEEEECCCCCHHH
Confidence 8888876543 12 33444667887653
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.04 E-value=1e-05 Score=72.71 Aligned_cols=75 Identities=13% Similarity=0.233 Sum_probs=58.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee-ecCc------hhh-hccCCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV-LSDN------NAV-VEYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~-~~~~------~~~-~~~aDivil~v 79 (272)
+.|||-|+|+|.+|+.+|+.|.+.|| +|++. ++++++++++.+ .++.+ ..|. .++ +++||+++.++
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~~----~v~vI-d~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t 76 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGENN----DITIV-DKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVT 76 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTTE----EEEEE-ESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECC
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCCC----CEEEE-ECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEc
Confidence 57999999999999999999999999 99999 999999998876 56543 2221 122 56899998888
Q ss_pred CcccHHHHH
Q 024121 80 KPQVVKDVA 88 (272)
Q Consensus 80 ~~~~~~~v~ 88 (272)
+++...-+.
T Consensus 77 ~~De~Nl~~ 85 (461)
T 4g65_A 77 NTDETNMAA 85 (461)
T ss_dssp SCHHHHHHH
T ss_pred CChHHHHHH
Confidence 777654333
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.9e-05 Score=70.14 Aligned_cols=87 Identities=24% Similarity=0.368 Sum_probs=61.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-c-C----------------------ceee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-I-G----------------------VKVL 62 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~-g----------------------~~~~ 62 (272)
+..||||||+|.||+.++..+.+. +. +|. ++ +|++++++.+.+ . | ..++
T Consensus 22 k~IRVGIIGaG~iG~~~~~~l~~~~~v----eLvAV~-D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~ 96 (446)
T 3upl_A 22 KPIRIGLIGAGEMGTDIVTQVARMQGI----EVGALS-ARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVT 96 (446)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTSSSE----EEEEEE-CSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEE
T ss_pred CceEEEEECChHHHHHHHHHHhhCCCc----EEEEEE-eCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEE
Confidence 457999999999999999887653 33 554 55 999998877654 2 4 3466
Q ss_pred cCchhhhc--cCCEEEEeeCcc-cHHHHHHHhchhcCCCCEEEE
Q 024121 63 SDNNAVVE--YSDVVVFSVKPQ-VVKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 63 ~~~~~~~~--~aDivil~v~~~-~~~~v~~~l~~~l~~~~~iis 103 (272)
+|.+++++ +.|+|++|+|+. ...++... .+..|+-|+.
T Consensus 97 ~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~---AL~AGKHVv~ 137 (446)
T 3upl_A 97 DDNDLILSNPLIDVIIDATGIPEVGAETGIA---AIRNGKHLVM 137 (446)
T ss_dssp SCHHHHHTCTTCCEEEECSCCHHHHHHHHHH---HHHTTCEEEE
T ss_pred CCHHHHhcCCCCCEEEEcCCChHHHHHHHHH---HHHcCCcEEe
Confidence 78888887 589999999753 32333322 2346777774
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=4e-05 Score=64.53 Aligned_cols=95 Identities=21% Similarity=0.293 Sum_probs=63.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH----HHHH----cC--ce--eecCchhhhccCCEEEEe
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES----IG--VK--VLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~----~g--~~--~~~~~~~~~~~aDivil~ 78 (272)
|||+|||+|.+|++++..|...+.. .++.++ |.++++++ +|.. .+ .. ...+ .+.+++||+|+++
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~--~el~L~-Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d-~~~~~~aDvVvit 76 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDV--DEIALV-DIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVT 76 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCC--SEEEEE-CSSHHHHHHHHHHHHHHHGGGTCCCEEEEESC-GGGGTTCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC--CEEEEE-eCCCCcchhhhhhhhcccccCCCCCeEecCCC-HHHhCCCCEEEEe
Confidence 7999999999999999999988763 489999 99986543 2222 11 22 2334 3568999999998
Q ss_pred e--C--ccc------------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 79 V--K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 79 v--~--~~~------------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
- | |.. ++++.+++..+ .|+.+++-.++++..
T Consensus 77 AG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~-~p~aivlvvsNPvd~ 123 (294)
T 2x0j_A 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMDV 123 (294)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHHH
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCceEEEEecCcchh
Confidence 6 2 321 12333455555 477777777776543
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=2.5e-05 Score=69.91 Aligned_cols=89 Identities=13% Similarity=0.192 Sum_probs=69.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccH-H
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV-K 85 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~-~ 85 (272)
...++++|+|+|.+|.++++.|...|. +|.++ ++++.+.......++.+ .+.++++..+|+|+.+... +.+ .
T Consensus 263 L~GKtVvVtGaGgIG~aiA~~Laa~GA----~Viv~-D~~~~~a~~Aa~~g~dv-~~lee~~~~aDvVi~atG~~~vl~~ 336 (488)
T 3ond_A 263 IAGKVAVVAGYGDVGKGCAAALKQAGA----RVIVT-EIDPICALQATMEGLQV-LTLEDVVSEADIFVTTTGNKDIIML 336 (488)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEE-CCGGGTTTTCSEEEECSSCSCSBCH
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHhCCcc-CCHHHHHHhcCEEEeCCCChhhhhH
Confidence 456899999999999999999999999 99999 99998887777777765 4667888899999998753 333 2
Q ss_pred HHHHHhchhcCCCCEEEEEcC
Q 024121 86 DVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~ 106 (272)
+.+ ..++++.+|++...
T Consensus 337 e~l----~~mk~gaiVvNaG~ 353 (488)
T 3ond_A 337 DHM----KKMKNNAIVCNIGH 353 (488)
T ss_dssp HHH----TTSCTTEEEEESSS
T ss_pred HHH----HhcCCCeEEEEcCC
Confidence 233 33567878777543
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.98 E-value=2.1e-05 Score=64.00 Aligned_cols=99 Identities=10% Similarity=0.106 Sum_probs=64.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCc---h---hh-hccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN---N---AV-VEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~---~---~~-~~~aDivil~v~ 80 (272)
..++|.|+|+|.+|..+++.|.+.| .|+++ ++++++.+.+. .|+.+. .|. + ++ +.++|.||++++
T Consensus 8 ~~~~viI~G~G~~G~~la~~L~~~g-----~v~vi-d~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (234)
T 2aef_A 8 KSRHVVICGWSESTLECLRELRGSE-----VFVLA-EDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLE 80 (234)
T ss_dssp --CEEEEESCCHHHHHHHHHSTTSE-----EEEEE-SCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCS
T ss_pred CCCEEEEECCChHHHHHHHHHHhCC-----eEEEE-ECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCC
Confidence 4578999999999999999998876 27788 99999888777 665432 121 1 22 568999999998
Q ss_pred cccHHHHHHHhchhcCCC-CEEEEEcCCCCHHHHH
Q 024121 81 PQVVKDVAMQIRPLLSRK-KLLVSVAAGVKLKDLQ 114 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~-~~iis~~~~~~~~~l~ 114 (272)
++...-.+......+.++ ++++...+....+.+.
T Consensus 81 ~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~ 115 (234)
T 2aef_A 81 SDSETIHCILGIRKIDESVRIIAEAERYENIEQLR 115 (234)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEEECSSGGGHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEEECCHhHHHHHH
Confidence 876544443333345566 4555443332333343
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0001 Score=62.56 Aligned_cols=95 Identities=15% Similarity=0.198 Sum_probs=62.8
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHH----HHH-----cCceeecCchhhhccCCEEEEe
Q 024121 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDA----FES-----IGVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~----l~~-----~g~~~~~~~~~~~~~aDivil~ 78 (272)
|||+|+| +|.+|++++..|...|+. .++.++ |+ ++++++. +.. ..+.+..+..++++++|+||++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~--~el~L~-Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ 77 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIA--DEVVFV-DIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVIT 77 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCC--SEEEEE-CCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC--CEEEEE-cCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEc
Confidence 6999999 999999999999887752 368889 99 7765432 221 1233433446778999999999
Q ss_pred eC--cc--------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 79 VK--PQ--------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 79 v~--~~--------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
.. .. .++++++.+..+ .++..++..++++.
T Consensus 78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SNPv~ 123 (303)
T 1o6z_A 78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVD 123 (303)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSSHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCChHH
Confidence 73 11 123444555554 56666665555543
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.96 E-value=1.5e-05 Score=69.27 Aligned_cols=107 Identities=15% Similarity=0.276 Sum_probs=64.4
Q ss_pred CCCCCCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC-----ceeecCchhhhc
Q 024121 2 DAFPIPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG-----VKVLSDNNAVVE 70 (272)
Q Consensus 2 ~~~~~~~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g-----~~~~~~~~~~~~ 70 (272)
+++..+|+.+||+|+| +|.+|..+.+.|.+... .++...+++.. .-.++.. .+ +.+ .+ ++...
T Consensus 8 ~~~~~~M~~~kV~IiGAtG~iG~~llr~L~~~p~---~elvai~~~~~-~g~~~~~~~~~~~~~v~~dl~~-~~-~~~~~ 81 (359)
T 1xyg_A 8 SSSVKPEKDIRIGLLGASGYTGAEIVRLLANHPH---FQVTLMTADRK-AGQSMESVFPHLRAQKLPTLVS-VK-DADFS 81 (359)
T ss_dssp -------CCEEEEEECCSSHHHHHHHHHHHTCSS---EEEEEEBCSTT-TTSCHHHHCGGGTTSCCCCCBC-GG-GCCGG
T ss_pred CcccccccCcEEEEECcCCHHHHHHHHHHHcCCC---cEEEEEeCchh-cCCCHHHhCchhcCccccccee-cc-hhHhc
Confidence 3455566668999999 89999999999987643 26665524432 1112211 12 112 22 34456
Q ss_pred cCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCC---HHHHHHHhC
Q 024121 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTG 118 (272)
Q Consensus 71 ~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~---~~~l~~~~~ 118 (272)
++|+||+|+|.....+..... ..|..+||.++... .+..+++++
T Consensus 82 ~vDvVf~atp~~~s~~~a~~~----~aG~~VId~sa~~R~~~~~~y~~~y~ 128 (359)
T 1xyg_A 82 TVDAVFCCLPHGTTQEIIKEL----PTALKIVDLSADFRLRNIAEYEEWYG 128 (359)
T ss_dssp GCSEEEECCCTTTHHHHHHTS----CTTCEEEECSSTTTCSCHHHHHHHHS
T ss_pred CCCEEEEcCCchhHHHHHHHH----hCCCEEEECCccccCCchhhhhhhhc
Confidence 899999999988776666543 46778999876543 344566654
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.94 E-value=7.6e-06 Score=70.50 Aligned_cols=84 Identities=15% Similarity=0.159 Sum_probs=58.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCH-HHHHHHHH----cC--ceeecCchhhhc--cCCEEEEee
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNL-KRRDAFES----IG--VKVLSDNNAVVE--YSDVVVFSV 79 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~-~~~~~l~~----~g--~~~~~~~~~~~~--~aDivil~v 79 (272)
++||||||+|.+|...+..+ ..+. +|. ++ ++++ ++.+++.+ .| ...+.|.+++++ +.|+|++|+
T Consensus 2 ~~rvgiiG~G~~~~~~~~~l-~~~~----~lvav~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~t 75 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEGL-DEEC----SITGIA-PGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINT 75 (337)
T ss_dssp CEEEEEECSSSCHHHHHTTC-CTTE----EEEEEE-CSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECS
T ss_pred ceEEEEEccchhHHHHHHhc-CCCc----EEEEEe-cCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeC
Confidence 47999999999998777766 4444 665 56 9887 34444433 35 467788889887 489999999
Q ss_pred CcccHHHHHHHhchhcCCCCEEE
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
|+....++..... ..|+-|+
T Consensus 76 p~~~H~~~~~~al---~aGkhVl 95 (337)
T 3ip3_A 76 VFSLNGKILLEAL---ERKIHAF 95 (337)
T ss_dssp SHHHHHHHHHHHH---HTTCEEE
T ss_pred CcchHHHHHHHHH---HCCCcEE
Confidence 9876555554432 3455444
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.8e-05 Score=71.11 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=63.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-cCcee-ec------CchhhhccCCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGVKV-LS------DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~-~~------~~~~~~~~aDivil~v 79 (272)
++++|.|+|+|.+|++++..|.+. |+ +|+++ +|++++++.+.+ .++.. .. +..++++++|+||.|+
T Consensus 22 ~~k~VlIiGAGgiG~aia~~L~~~~g~----~V~v~-~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~t 96 (467)
T 2axq_A 22 MGKNVLLLGSGFVAQPVIDTLAANDDI----NVTVA-CRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLI 96 (467)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHTSTTE----EEEEE-ESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECS
T ss_pred CCCEEEEECChHHHHHHHHHHHhCCCC----eEEEE-ECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECC
Confidence 457899999999999999999998 67 89999 999999888865 34432 11 2235567899999999
Q ss_pred CcccHHHHHHHhchhcCCCCEEEEE
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|......+... .+.++..+++.
T Consensus 97 p~~~~~~v~~a---~l~~g~~vvd~ 118 (467)
T 2axq_A 97 PYTFHPNVVKS---AIRTKTDVVTS 118 (467)
T ss_dssp CGGGHHHHHHH---HHHHTCEEEEC
T ss_pred chhhhHHHHHH---HHhcCCEEEEe
Confidence 87644444322 13355666654
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4.5e-05 Score=65.04 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=64.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHHc--C--ceee---cCchhhhccCCEEEEee-
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFESI--G--VKVL---SDNNAVVEYSDVVVFSV- 79 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~--~~l~~~--g--~~~~---~~~~~~~~~aDivil~v- 79 (272)
|||+|||+ |.+|.+++..|...|. ..+|.++ |+++.+. .++... . +... ++..++++++|+||++.
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~--~~ev~L~-Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag 77 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPL--VSRLTLY-DIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAG 77 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTT--CSEEEEE-ESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC--CcEEEEE-eCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCC
Confidence 69999998 9999999999998883 2389999 9986221 122221 1 2221 35667899999999997
Q ss_pred -Cc--------------ccHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 80 -KP--------------QVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 80 -~~--------------~~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
|. ..+.++.+.+..+. |+..++..++++..
T Consensus 78 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~sNPv~~ 122 (314)
T 1mld_A 78 VPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPVNS 122 (314)
T ss_dssp CCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHH
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCCcch
Confidence 22 12445555666554 66677766665543
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=4.2e-05 Score=65.89 Aligned_cols=91 Identities=11% Similarity=0.128 Sum_probs=59.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeec-----------------CchhhhccC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLS-----------------DNNAVVEYS 72 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~-----------------~~~~~~~~a 72 (272)
+||||+|+|.||..+++.|.+... -++...++++++...++.. .|+.... +.+++..++
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~p~---~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~v 78 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQPD---MKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTS 78 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTT---EEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHC
T ss_pred eEEEEEecCHHHHHHHHHHHcCCC---CEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCC
Confidence 589999999999999999887532 1554333887665544443 3444322 223444579
Q ss_pred CEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCC
Q 024121 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 73 Divil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
|+||.|+|.....+..+... ..+..+|+.++.
T Consensus 79 DvV~~aTp~~~s~~~a~~~~---~aG~kvV~~sa~ 110 (340)
T 1b7g_O 79 DIVVDTTPNGVGAQYKPIYL---QLQRNAIFQGGE 110 (340)
T ss_dssp SEEEECCSTTHHHHHHHHHH---HTTCEEEECTTS
T ss_pred CEEEECCCCchhHHHHHHHH---HcCCeEEEeCCC
Confidence 99999999887666665432 345556665443
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=6.1e-05 Score=63.87 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=69.7
Q ss_pred CCCeEEEE-cc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhc--cCCEEEEeeCcccH
Q 024121 9 ESFILGFI-GA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVV 84 (272)
Q Consensus 9 ~~~~IgiI-G~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDivil~v~~~~~ 84 (272)
+.++++|| |+ |++|...+++|.+.|+ ++ ++ ..+|.+.. -.-.|+.+..+..|+.+ +.|++++++|++.+
T Consensus 12 ~~~siaVV~Gasg~~G~~~~~~l~~~G~----~~-v~-~VnP~~~g-~~i~G~~vy~sl~el~~~~~vD~avI~vP~~~~ 84 (305)
T 2fp4_A 12 DKNTKVICQGFTGKQGTFHSQQALEYGT----NL-VG-GTTPGKGG-KTHLGLPVFNTVKEAKEQTGATASVIYVPPPFA 84 (305)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTC----EE-EE-EECTTCTT-CEETTEEEESSHHHHHHHHCCCEEEECCCHHHH
T ss_pred CCCcEEEEECCCCCHHHHHHHHHHHCCC----cE-EE-EeCCCcCc-ceECCeeeechHHHhhhcCCCCEEEEecCHHHH
Confidence 44679999 98 9999999999999998 73 33 33443210 00158888888889888 89999999999999
Q ss_pred HHHHHHhchhcCCCCEEEEEcCCCCHHH
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAGVKLKD 112 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~~~~~~ 112 (272)
.++++++... .- +.++..+.|++.++
T Consensus 85 ~~~~~e~i~~-Gi-~~iv~~t~G~~~~~ 110 (305)
T 2fp4_A 85 AAAINEAIDA-EV-PLVVCITEGIPQQD 110 (305)
T ss_dssp HHHHHHHHHT-TC-SEEEECCCCCCHHH
T ss_pred HHHHHHHHHC-CC-CEEEEECCCCChHH
Confidence 9988876543 12 35555778887653
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=1.9e-05 Score=68.06 Aligned_cols=91 Identities=9% Similarity=0.119 Sum_probs=58.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c------------------CceeecCchhhhc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I------------------GVKVLSDNNAVVE 70 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~------------------g~~~~~~~~~~~~ 70 (272)
++||||+|+|.||..+++.|.++.. .++...++++++...++.. . ++.+..+..++..
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~~~---~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~ 77 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQDD---MKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD 77 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSSS---EEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH
T ss_pred CeEEEEEeECHHHHHHHHHHHcCCC---cEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhc
Confidence 3689999999999999999887432 1554332776554433332 2 2222234456667
Q ss_pred cCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcC
Q 024121 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 71 ~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
++|+||.|+|.....+...... ..|+.||+.++
T Consensus 78 ~vDvV~~atp~~~~~~~a~~~l---~aG~~VId~sp 110 (337)
T 1cf2_P 78 EADIVIDCTPEGIGAKNLKMYK---EKGIKAIFQGG 110 (337)
T ss_dssp TCSEEEECCSTTHHHHHHHHHH---HHTCCEEECTT
T ss_pred CCCEEEECCCchhhHHHHHHHH---HcCCEEEEecC
Confidence 8999999999887666665443 23455665543
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.5e-05 Score=67.82 Aligned_cols=91 Identities=14% Similarity=0.192 Sum_probs=58.4
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH----HHHHHHH-----------cCceee-cCchhhhc-c
Q 024121 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLK----RRDAFES-----------IGVKVL-SDNNAVVE-Y 71 (272)
Q Consensus 10 ~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~----~~~~l~~-----------~g~~~~-~~~~~~~~-~ 71 (272)
++||+|+| +|.+|..+.+.|.++.. .+|... ++++. ....... ..+.+. .++++..+ +
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~p~---~ev~~i-~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADHPM---FELTAL-AASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFED 83 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSS---EEEEEE-EECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTT
T ss_pred cceEEEECcCCHHHHHHHHHHhcCCC---CEEEEE-EcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCC
Confidence 47999999 89999999999887642 266655 43221 1211100 111111 24455446 8
Q ss_pred CCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCC
Q 024121 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 72 aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
+|+||+|+|.....+....+. ..|..|||.++.
T Consensus 84 ~DvV~~atp~~~~~~~a~~~~---~aG~~VId~s~~ 116 (354)
T 1ys4_A 84 VDIVFSALPSDLAKKFEPEFA---KEGKLIFSNASA 116 (354)
T ss_dssp CCEEEECCCHHHHHHHHHHHH---HTTCEEEECCST
T ss_pred CCEEEECCCchHHHHHHHHHH---HCCCEEEECCch
Confidence 999999999887777766654 467789987654
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.8e-05 Score=68.75 Aligned_cols=90 Identities=14% Similarity=0.119 Sum_probs=62.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c------Cceee-------cCchhhhcc--CC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I------GVKVL-------SDNNAVVEY--SD 73 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~------g~~~~-------~~~~~~~~~--aD 73 (272)
|+||.|||+|.+|+.+++.|.+.|.. ..+|.++ +|++++++++.+ . .+... .+..+++++ +|
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~g~~-~~~V~v~-~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~D 78 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMNREV-FSHITLA-SRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQ 78 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCTTT-CCEEEEE-ESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCC-ceEEEEE-ECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCC
Confidence 36899999999999999999998731 0278999 999999887765 1 23221 123445555 89
Q ss_pred EEEEeeCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 74 VVVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 74 ivil~v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
+||.|+++.....++.... ..++.++++
T Consensus 79 vVin~ag~~~~~~v~~a~l---~~g~~vvD~ 106 (405)
T 4ina_A 79 IVLNIALPYQDLTIMEACL---RTGVPYLDT 106 (405)
T ss_dssp EEEECSCGGGHHHHHHHHH---HHTCCEEES
T ss_pred EEEECCCcccChHHHHHHH---HhCCCEEEe
Confidence 9999998776555554332 345556664
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.87 E-value=2.3e-05 Score=68.22 Aligned_cols=88 Identities=17% Similarity=0.196 Sum_probs=64.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc---eee----cCchhhhccCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV---KVL----SDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~---~~~----~~~~~~~~~aDivil~v~~ 81 (272)
...+|.|+|+|.+|.+.+..+...|. +|+++ +|++++++.+.+.+. ... .+..+.+.++|+||-|++.
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~Ga----~V~v~-dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~ 240 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLGA----QVQIF-DINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLV 240 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCc
Confidence 34799999999999999999999998 99999 999999888776432 111 1233556789999999853
Q ss_pred cc-------HHHHHHHhchhcCCCCEEEEEc
Q 024121 82 QV-------VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 82 ~~-------~~~v~~~l~~~l~~~~~iis~~ 105 (272)
.. .++.+ +.++++.+++++.
T Consensus 241 ~~~~~~~li~~~~~----~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 241 PGRRAPILVPASLV----EQMRTGSVIVDVA 267 (361)
T ss_dssp TTSSCCCCBCHHHH----TTSCTTCEEEETT
T ss_pred CCCCCCeecCHHHH----hhCCCCCEEEEEe
Confidence 22 22332 3456788888764
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.86 E-value=2.1e-05 Score=70.48 Aligned_cols=88 Identities=16% Similarity=0.231 Sum_probs=60.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC-cee----ec---CchhhhccCCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-VKV----LS---DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g-~~~----~~---~~~~~~~~aDivil~v 79 (272)
.+++|.|+|+|.+|++++..|.+.|+ +|+++ +|++++++.+.+ .+ +.. .. +..++++++|+||.|+
T Consensus 2 ~~k~VlViGaG~iG~~ia~~L~~~G~----~V~v~-~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a 76 (450)
T 1ff9_A 2 ATKSVLMLGSGFVTRPTLDVLTDSGI----KVTVA-CRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLI 76 (450)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTC----EEEEE-ESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcC----EEEEE-ECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECC
Confidence 46789999999999999999999998 99999 999988877665 22 321 11 2235567899999999
Q ss_pred CcccHHHHHHHhchhcCCCCEEEEE
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|......+.... +.+++.+++.
T Consensus 77 ~~~~~~~i~~a~---l~~g~~vvd~ 98 (450)
T 1ff9_A 77 PYTFHATVIKSA---IRQKKHVVTT 98 (450)
T ss_dssp C--CHHHHHHHH---HHHTCEEEES
T ss_pred ccccchHHHHHH---HhCCCeEEEe
Confidence 875443333221 2344555544
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.86 E-value=4.5e-05 Score=64.35 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=67.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhc--cCCEEEEeeCcccHHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDivil~v~~~~~~~v 87 (272)
.++.|+|+ |+||+.+.+++.+.|+ + .++ ..+|.+... .-.|+.+..+..++.+ ++|++++++|++.+.++
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~g~----~-~V~-~VnP~~~g~-~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~~~~ 86 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLECGT----K-IVG-GVTPGKGGQ-NVHGVPVFDTVKEAVKETDANASVIFVPAPFAKDA 86 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC----C-EEE-EECTTCTTC-EETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCC----e-EEE-EeCCCCCCc-eECCEeeeCCHHHHhhcCCCCEEEEccCHHHHHHH
Confidence 46888899 9999999999999998 6 333 334432100 0158888888888887 89999999999999888
Q ss_pred HHHhchhcCCCCEEEEEcCCCCHHH
Q 024121 88 AMQIRPLLSRKKLLVSVAAGVKLKD 112 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~~~~~ 112 (272)
+.+.... .-+.+|-.+.|++.+.
T Consensus 87 v~ea~~~--Gi~~vVi~t~G~~~~~ 109 (294)
T 2yv1_A 87 VFEAIDA--GIELIVVITEHIPVHD 109 (294)
T ss_dssp HHHHHHT--TCSEEEECCSCCCHHH
T ss_pred HHHHHHC--CCCEEEEECCCCCHHH
Confidence 8776543 2233454667887653
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.85 E-value=5.4e-05 Score=63.54 Aligned_cols=94 Identities=19% Similarity=0.215 Sum_probs=65.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c-----C--ceeec--CchhhhccCCEEEE
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-----G--VKVLS--DNNAVVEYSDVVVF 77 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~-----g--~~~~~--~~~~~~~~aDivil 77 (272)
...+++.|+|+|-+|.+++..|.+.|. .+|+++ +|++++++.+.+ . + +.... +..+.+.++|+||-
T Consensus 125 l~~k~vlVlGaGG~g~aia~~L~~~G~---~~v~i~-~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVIn 200 (283)
T 3jyo_A 125 AKLDSVVQVGAGGVGNAVAYALVTHGV---QKLQVA-DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVN 200 (283)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEE
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-ECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEE
Confidence 356789999999999999999999987 259999 999999887755 1 2 22322 45566788999999
Q ss_pred eeCcccHHHHHHHh-chhcCCCCEEEEEc
Q 024121 78 SVKPQVVKDVAMQI-RPLLSRKKLLVSVA 105 (272)
Q Consensus 78 ~v~~~~~~~v~~~l-~~~l~~~~~iis~~ 105 (272)
|+|.......-..+ ...++++.+++|+.
T Consensus 201 aTp~Gm~~~~~~pi~~~~l~~~~~v~Dlv 229 (283)
T 3jyo_A 201 ATPMGMPAHPGTAFDVSCLTKDHWVGDVV 229 (283)
T ss_dssp CSSTTSTTSCSCSSCGGGCCTTCEEEECC
T ss_pred CCCCCCCCCCCCCCCHHHhCCCCEEEEec
Confidence 99753211100001 12356777777764
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=97.83 E-value=9.7e-05 Score=63.47 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=60.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHH----cC------------c-------eee--
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES----IG------------V-------KVL-- 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~l~~----~g------------~-------~~~-- 62 (272)
++||||+|+|.+|..+++.|.++.. -+|...+++ +++.+..+.+ .| + .+.
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~~~~---vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~ 79 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFNSGK---VDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQE 79 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCS---SEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECC
T ss_pred ceEEEEEccCHHHHHHHHHHHcCCC---cEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEec
Confidence 4699999999999999999887532 266554375 6777666654 11 0 111
Q ss_pred cCchhh-h--ccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCC
Q 024121 63 SDNNAV-V--EYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 63 ~~~~~~-~--~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
.+++++ . .++|+||.|+|.....+..... +..|..+|+++++
T Consensus 80 ~d~~~l~~~~~~vDvV~eatg~~~~~e~a~~~---l~aGak~V~iSap 124 (335)
T 1u8f_O 80 RDPSKIKWGDAGAEYVVESTGVFTTMEKAGAH---LQGGAKRVIISAP 124 (335)
T ss_dssp SSGGGCCTTTTTCCEEEECSSSCCSHHHHGGG---GGGTCSEEEESSC
T ss_pred CCHHHCccccCCCCEEEECCCchhhHHHHHHH---HhCCCeEEEeccC
Confidence 244443 1 4799999999988777666543 4456555656554
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=4.2e-06 Score=67.14 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=55.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHHcCce--eecCchhhhc-cCCEEEEeeCcccH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNAVVE-YSDVVVFSVKPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~-~aDivil~v~~~~~ 84 (272)
+.++++|||+|++|..+++.+.. .|+ ++..+.|.++++..... .|+. ..++..+.++ +.|+|++|+|....
T Consensus 79 ~~~rV~IIGaG~~G~~la~~~~~~~g~----~iVg~~D~dp~k~g~~i-~gv~V~~~~dl~ell~~~ID~ViIA~Ps~~~ 153 (211)
T 2dt5_A 79 RKWGLCIVGMGRLGSALADYPGFGESF----ELRGFFDVDPEKVGRPV-RGGVIEHVDLLPQRVPGRIEIALLTVPREAA 153 (211)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCSSE----EEEEEEESCTTTTTCEE-TTEEEEEGGGHHHHSTTTCCEEEECSCHHHH
T ss_pred CCCEEEEECccHHHHHHHHhHhhcCCc----EEEEEEeCCHHHHhhhh-cCCeeecHHhHHHHHHcCCCEEEEeCCchhH
Confidence 34689999999999999985322 255 66544398887654322 2333 3456666665 58999999998877
Q ss_pred HHHHHHhch
Q 024121 85 KDVAMQIRP 93 (272)
Q Consensus 85 ~~v~~~l~~ 93 (272)
.++.+.+..
T Consensus 154 ~ei~~~l~~ 162 (211)
T 2dt5_A 154 QKAADLLVA 162 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776653
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00017 Score=59.06 Aligned_cols=82 Identities=18% Similarity=0.300 Sum_probs=56.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhc-cCCEEEEeeCcccHHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDivil~v~~~~~~~v 87 (272)
|||+|+|+ |.||+.++..+.+. ++ ++....+++ .+.++++. ++|+||-+++|+.+.+.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~----elva~~d~~---------------~dl~~~~~~~~DvvIDfT~p~a~~~~ 61 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDL----TLSAELDAG---------------DPLSLLTDGNTEVVIDFTHPDVVMGN 61 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTC----EEEEEECTT---------------CCTHHHHHTTCCEEEECSCTTTHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEEccC---------------CCHHHHhccCCcEEEEccChHHHHHH
Confidence 58999996 99999999998765 77 776442664 23444443 78999988888887777
Q ss_pred HHHhchhcCCCCEEEEEcCCCCHHHHH
Q 024121 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQ 114 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~~~~~l~ 114 (272)
+.... ..+.-+|..+.|.+.+..+
T Consensus 62 ~~~a~---~~g~~~VigTTG~~~e~~~ 85 (245)
T 1p9l_A 62 LEFLI---DNGIHAVVGTTGFTAERFQ 85 (245)
T ss_dssp HHHHH---HTTCEEEECCCCCCHHHHH
T ss_pred HHHHH---HcCCCEEEcCCCCCHHHHH
Confidence 65543 3445455445677766443
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00013 Score=60.87 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=53.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCchhh-hccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDNNAV-VEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~~~~-~~~aDivil~v~ 80 (272)
++|||.|.|+|.+|+.+++.|.+.|+ +|++. +|++++...+...++... .|..+. +.++|+||-+..
T Consensus 4 m~~~ilVtGaG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~ 72 (286)
T 3ius_A 4 MTGTLLSFGHGYTARVLSRALAPQGW----RIIGT-SRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTA 72 (286)
T ss_dssp -CCEEEEETCCHHHHHHHHHHGGGTC----EEEEE-ESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCC
T ss_pred CcCcEEEECCcHHHHHHHHHHHHCCC----EEEEE-EcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCC
Confidence 35899999999999999999999999 99999 999988877776666532 222111 678999999874
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.79 E-value=3.3e-05 Score=66.73 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=58.6
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC---ceeecCchhhhccCCEEEEe
Q 024121 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG---VKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g---~~~~~~~~~~~~~aDivil~ 78 (272)
++++||+|+| +|.+|..+.+.|.++.. .++... .+..+.-+++.. .| +.+ .+..+ +.++|+||+|
T Consensus 2 ~~~~kV~IiGAtG~iG~~llr~L~~~p~---~elv~v-~s~~~~g~~~~~~~~~~~g~~~~~~-~~~~~-~~~vDvV~~a 75 (345)
T 2ozp_A 2 TGKKTLSIVGASGYAGGEFLRLALSHPY---LEVKQV-TSRRFAGEPVHFVHPNLRGRTNLKF-VPPEK-LEPADILVLA 75 (345)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHTCTT---EEEEEE-BCSTTTTSBGGGTCGGGTTTCCCBC-BCGGG-CCCCSEEEEC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHcCCC---cEEEEE-ECchhhCchhHHhCchhcCcccccc-cchhH-hcCCCEEEEc
Confidence 4468999999 69999999999987643 266555 332222111211 11 122 22233 4789999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
+|.....+....+. ..|..+|+.++..
T Consensus 76 ~g~~~s~~~a~~~~---~aG~~VId~Sa~~ 102 (345)
T 2ozp_A 76 LPHGVFAREFDRYS---ALAPVLVDLSADF 102 (345)
T ss_dssp CCTTHHHHTHHHHH---TTCSEEEECSSTT
T ss_pred CCcHHHHHHHHHHH---HCCCEEEEcCccc
Confidence 99887777665543 4677899887654
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.78 E-value=3.3e-05 Score=64.69 Aligned_cols=92 Identities=11% Similarity=0.117 Sum_probs=62.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
...+++.|+|+|.+|.+++..|.+.|. .+|+++ +|++++++.+.+ .+.....+..+ + ++|+||-|+|......
T Consensus 120 ~~~k~vlvlGaGGaaraia~~L~~~G~---~~v~v~-nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~ 193 (282)
T 3fbt_A 120 IKNNICVVLGSGGAARAVLQYLKDNFA---KDIYVV-TRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPK 193 (282)
T ss_dssp CTTSEEEEECSSTTHHHHHHHHHHTTC---SEEEEE-ESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTS
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCC
Confidence 356899999999999999999999986 379999 999999888865 22221222333 4 8999999997532111
Q ss_pred H--HHHhchhcCCCCEEEEEc
Q 024121 87 V--AMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 87 v--~~~l~~~l~~~~~iis~~ 105 (272)
. ..--...++++.+++|+.
T Consensus 194 ~~~~pi~~~~l~~~~~v~Dlv 214 (282)
T 3fbt_A 194 EGESPVDKEVVAKFSSAVDLI 214 (282)
T ss_dssp TTCCSSCHHHHTTCSEEEESC
T ss_pred CccCCCCHHHcCCCCEEEEEe
Confidence 0 000012246777888764
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00012 Score=63.06 Aligned_cols=88 Identities=14% Similarity=0.128 Sum_probs=56.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHH-c--------------------CceeecCchh
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES-I--------------------GVKVLSDNNA 67 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~-~--------------------g~~~~~~~~~ 67 (272)
++||||+|+|.+|+.+++.|.+.. + +|...++++++....+.+ . ++.+..+..+
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~~~~----evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~ 77 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQDDM----EVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILD 77 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSE----EEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGG
T ss_pred ceEEEEECCCHHHHHHHHHHHhCCCc----eEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHH
Confidence 369999999999999999988763 4 655443655544433333 2 2222223445
Q ss_pred hhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEE
Q 024121 68 VVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 68 ~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis 103 (272)
...++|+||.|+|.....+..+ ..+++.|+.||+
T Consensus 78 ~~~~vDiV~eatg~~~s~~~a~--~~~l~aG~~VI~ 111 (343)
T 2yyy_A 78 IIEDADIVVDGAPKKIGKQNLE--NIYKPHKVKAIL 111 (343)
T ss_dssp TGGGCSEEEECCCTTHHHHHHH--HTTTTTTCEEEE
T ss_pred hccCCCEEEECCCccccHHHHH--HHHHHCCCEEEE
Confidence 5568999999998776555543 234556676664
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00022 Score=60.59 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=61.8
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHH---HHHHHHHc--Cceee----cCchhhhccCCEEEEee
Q 024121 11 FILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSNLK---RRDAFESI--GVKVL----SDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~---~~~~l~~~--g~~~~----~~~~~~~~~aDivil~v 79 (272)
|||+||| +|.+|.+++..|... ++ ..++.++ |+++. .+.++... ...+. .+..+.+++||+||++.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~--~~el~L~-Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~a 77 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPS--GSELSLY-DIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISA 77 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCT--TEEEEEE-CSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC--CceEEEE-ecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeC
Confidence 7999999 899999999999875 54 2389999 98861 12233332 22332 24567789999999997
Q ss_pred --C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 --K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 --~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
| |. . ++++.+.+..+ .|+.+++..+++..
T Consensus 78 g~~rkpG~~R~dll~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPvd 122 (312)
T 3hhp_A 78 GVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNPVN 122 (312)
T ss_dssp SCSCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEecCcch
Confidence 2 21 1 22333445554 47777777766554
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00011 Score=62.06 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=66.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhc--c-CCEEEEeeCcccHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--Y-SDVVVFSVKPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~-aDivil~v~~~~~~~ 86 (272)
.++.|+|+ |+||+.+.+++.+.|+ + .++ ..+|.+... .-.|+.+..+..++.+ . .|++++++|++.+.+
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~g~----~-~v~-~VnP~~~g~-~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~~~ 86 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEYGT----K-VVA-GVTPGKGGS-EVHGVPVYDSVKEALAEHPEINTSIVFVPAPFAPD 86 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC----E-EEE-EECTTCTTC-EETTEEEESSHHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCC----c-EEE-EeCCCCCCc-eECCEeeeCCHHHHhhcCCCCCEEEEecCHHHHHH
Confidence 46888898 9999999999999998 6 333 333432100 0158888888888876 5 999999999999998
Q ss_pred HHHHhchhcCCCCEEEEEcCCCCHHH
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVKLKD 112 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~~~~ 112 (272)
++.+.... .-+.+|-.+.|++.++
T Consensus 87 ~v~ea~~~--Gi~~vVi~t~G~~~~~ 110 (297)
T 2yv2_A 87 AVYEAVDA--GIRLVVVITEGIPVHD 110 (297)
T ss_dssp HHHHHHHT--TCSEEEECCCCCCHHH
T ss_pred HHHHHHHC--CCCEEEEECCCCCHHH
Confidence 88876543 1233444567887643
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=2.1e-05 Score=67.78 Aligned_cols=97 Identities=13% Similarity=0.248 Sum_probs=58.3
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcCceeec-CchhhhccCCEEEEeeCccc
Q 024121 7 PAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLS-DNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 7 ~~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~~-~~~~~~~~aDivil~v~~~~ 83 (272)
|++.|||+|+| +|.+|+.+.+.|.+.+| +..++...+++.. .+.-.+....+.+.+ +. +...++|+||.|+|...
T Consensus 3 M~m~~kV~IiGAtG~iG~~llr~L~~~~~-~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~-~~~~~~DvV~~a~g~~~ 80 (340)
T 2hjs_A 3 MSQPLNVAVVGATGSVGEALVGLLDERDF-PLHRLHLLASAESAGQRMGFAESSLRVGDVDS-FDFSSVGLAFFAAAAEV 80 (340)
T ss_dssp --CCCCEEEETTTSHHHHHHHHHHHHTTC-CCSCEEEEECTTTTTCEEEETTEEEECEEGGG-CCGGGCSEEEECSCHHH
T ss_pred CCCCcEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEEecCCCCCCccccCCcceEEecCCH-HHhcCCCEEEEcCCcHH
Confidence 33457999999 79999999999987666 3335554424332 110001001112211 22 23578999999999877
Q ss_pred HHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
..+..+.+. ..|..+|+.++..
T Consensus 81 s~~~a~~~~---~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 81 SRAHAERAR---AAGCSVIDLSGAL 102 (340)
T ss_dssp HHHHHHHHH---HTTCEEEETTCTT
T ss_pred HHHHHHHHH---HCCCEEEEeCCCC
Confidence 666666543 3566788776544
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.73 E-value=3e-05 Score=63.09 Aligned_cols=72 Identities=8% Similarity=0.111 Sum_probs=51.6
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHHcCceee-------cCchhhhccCCEEEE
Q 024121 7 PAESFILGFIG-AGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVF 77 (272)
Q Consensus 7 ~~~~~~IgiIG-~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDivil 77 (272)
.+++++|.|.| +|.+|.++++.|++.| + +|.+. +|++++.+.+...++... .+..++++++|+||.
T Consensus 20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~----~V~~~-~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~ 94 (236)
T 3qvo_A 20 QGHMKNVLILGAGGQIARHVINQLADKQTI----KQTLF-ARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYA 94 (236)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCTTE----EEEEE-ESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred cCcccEEEEEeCCcHHHHHHHHHHHhCCCc----eEEEE-EcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEE
Confidence 34567899998 6999999999999999 8 99999 999877654433343321 122345778999998
Q ss_pred eeCccc
Q 024121 78 SVKPQV 83 (272)
Q Consensus 78 ~v~~~~ 83 (272)
+.....
T Consensus 95 ~a~~~~ 100 (236)
T 3qvo_A 95 NLTGED 100 (236)
T ss_dssp ECCSTT
T ss_pred cCCCCc
Confidence 875543
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.7e-05 Score=67.98 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=57.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCC-CC----CCcE-EEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGV-LP----PDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~-~~----~~~V-~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
+.+||||||+|.||+.+++.+.+... +. .-+| .++ +|++++.+.+. ....++|.++++ +.|+|+.|++..
T Consensus 2 k~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~-d~~~~~~~~~~--~~~~~~d~~~ll-~iDvVve~t~~~ 77 (332)
T 2ejw_A 2 EALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVL-VRDPRKPRAIP--QELLRAEPFDLL-EADLVVEAMGGV 77 (332)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEE-CSCTTSCCSSC--GGGEESSCCCCT-TCSEEEECCCCS
T ss_pred CeeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEE-ECCHHHhhccC--cccccCCHHHHh-CCCEEEECCCCc
Confidence 45799999999999999999887530 00 0144 456 88876543221 123456778878 999999999876
Q ss_pred c-HHHHHHHhchhcCCCCEEEE
Q 024121 83 V-VKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 83 ~-~~~v~~~l~~~l~~~~~iis 103 (272)
. ..+...+ .+..|+-|++
T Consensus 78 ~~a~~~~~~---AL~aGKhVVt 96 (332)
T 2ejw_A 78 EAPLRLVLP---ALEAGIPLIT 96 (332)
T ss_dssp HHHHHHHHH---HHHTTCCEEE
T ss_pred HHHHHHHHH---HHHcCCeEEE
Confidence 3 3444433 2446677775
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.73 E-value=3.3e-05 Score=66.77 Aligned_cols=145 Identities=12% Similarity=0.073 Sum_probs=84.6
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCC-----CCCCCcEEEEeCC-CHHH-HHH----HHH-cCceeecCchhhhccCCEE
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSG-----VLPPDRICTAVHS-NLKR-RDA----FES-IGVKVLSDNNAVVEYSDVV 75 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g-----~~~~~~V~v~~~r-~~~~-~~~----l~~-~g~~~~~~~~~~~~~aDiv 75 (272)
+++||+|+| +|.+|+.+.+.|.+++ + .++....++ +..+ ... +.. ..+.+.+...+.+.++|+|
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~---~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~~~~~DvV 84 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGR---LRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVLGGHDAV 84 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTS---EEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHHHTTCSEE
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCcc---EEEEEEECCCcCCCchhhhcccccccceeeeccCCHHHhcCCCEE
Confidence 457999999 8999999999999876 3 256655233 3222 211 111 1222222123345689999
Q ss_pred EEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH---HHHHHHhCC-CC--EEEEccCc---hhhhcCCceEEEeCCCC
Q 024121 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTGH-SR--FIRVMPNT---PSAVGEAATVMSLGGTA 146 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~---~~l~~~~~~-~~--~~~~~p~~---~~~~~~g~~~~~~~~~~ 146 (272)
|+|++.....++.+.+ ..|..+|+.++.... +..+++.+. .. ++-..|-. +..+... .++. ++++
T Consensus 85 f~alg~~~s~~~~~~~----~~G~~vIDlSa~~R~~~~~~~~~~y~~~h~~~~vyglPEv~~n~~~i~~~-~iIa-nPgC 158 (352)
T 2nqt_A 85 FLALPHGHSAVLAQQL----SPETLIIDCGADFRLTDAAVWERFYGSSHAGSWPYGLPELPGARDQLRGT-RRIA-VPGC 158 (352)
T ss_dssp EECCTTSCCHHHHHHS----CTTSEEEECSSTTTCSCHHHHHHHHSSCCCCCCCBSCTTSTTHHHHHTTC-SEEE-CCCH
T ss_pred EECCCCcchHHHHHHH----hCCCEEEEECCCccCCcchhhhhhccccCCCCeeEEecccccCHHHHhcC-CEEE-cCCH
Confidence 9999988877777665 356789998776542 445667651 12 23333433 3333332 2333 3434
Q ss_pred CHH-HHHHHHHHhhhcC
Q 024121 147 TEE-DGELIGKLFGSVG 162 (272)
Q Consensus 147 ~~~-~~~~v~~ll~~~G 162 (272)
... ..-.+.++.+..+
T Consensus 159 ~tt~~~lal~PL~~~~~ 175 (352)
T 2nqt_A 159 YPTAALLALFPALAADL 175 (352)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 333 3456788887766
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=1e-05 Score=64.63 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=55.0
Q ss_pred CCeEEEEcccHHHHHHHHHH--HhCCCCCCCcEEEEeCCCHH-HHHH-HHHcCceee--cCchhhhc--cCCEEEEeeCc
Q 024121 10 SFILGFIGAGKMAESIAKGV--AKSGVLPPDRICTAVHSNLK-RRDA-FESIGVKVL--SDNNAVVE--YSDVVVFSVKP 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l--~~~g~~~~~~V~v~~~r~~~-~~~~-l~~~g~~~~--~~~~~~~~--~aDivil~v~~ 81 (272)
..+++|+|+|++|.++++.+ .+.|+ ++..+.|.+++ +... .. .|+.+. ++..+.++ +.|++++|+|.
T Consensus 84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~----~iVg~~D~dp~~kiG~~~i-~GvpV~~~~dL~~~v~~~~Id~vIIAvPs 158 (212)
T 3keo_A 84 TTNVMLVGCGNIGRALLHYRFHDRNKM----QISMAFDLDSNDLVGKTTE-DGIPVYGISTINDHLIDSDIETAILTVPS 158 (212)
T ss_dssp CEEEEEECCSHHHHHHTTCCCCTTSSE----EEEEEEECTTSTTTTCBCT-TCCBEEEGGGHHHHC-CCSCCEEEECSCG
T ss_pred CCEEEEECcCHHHHHHHHhhhcccCCe----EEEEEEeCCchhccCceeE-CCeEEeCHHHHHHHHHHcCCCEEEEecCc
Confidence 45899999999999999874 34455 65543398887 5432 11 355543 45556665 58999999999
Q ss_pred ccHHHHHHHhch
Q 024121 82 QVVKDVAMQIRP 93 (272)
Q Consensus 82 ~~~~~v~~~l~~ 93 (272)
....++.+.+..
T Consensus 159 ~~aq~v~d~lv~ 170 (212)
T 3keo_A 159 TEAQEVADILVK 170 (212)
T ss_dssp GGHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 888888877654
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.72 E-value=9.1e-05 Score=60.99 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=54.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHHHHH------cCceee--
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDAFES------IGVKVL-- 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~~l~~------~g~~~~-- 62 (272)
..+|.|||+|.+|+.++..|...|. .+|+++ |++. .|++.+++ .++.+.
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv---~~i~lv-D~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 106 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGV---GNLTLL-DFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV 106 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCC---CeEEEE-cCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 3689999999999999999999996 378999 9886 55554433 133321
Q ss_pred c------CchhhhccCCEEEEeeCcccHHHHHHHh
Q 024121 63 S------DNNAVVEYSDVVVFSVKPQVVKDVAMQI 91 (272)
Q Consensus 63 ~------~~~~~~~~aDivil~v~~~~~~~v~~~l 91 (272)
. +..+.+.++|+||.|++....+..+...
T Consensus 107 ~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~ 141 (249)
T 1jw9_B 107 NALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAG 141 (249)
T ss_dssp CSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHH
T ss_pred eccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHH
Confidence 1 1234567889999998665555444443
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00018 Score=61.66 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=64.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCC---CCCcEEEEeCCC----HHHHHH----HHHc------CceeecCchhhhc
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVL---PPDRICTAVHSN----LKRRDA----FESI------GVKVLSDNNAVVE 70 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~---~~~~V~v~~~r~----~~~~~~----l~~~------g~~~~~~~~~~~~ 70 (272)
+.|||+|+|+ |.+|++++..|...|+. ...+|.++ |++ +++++. +... .+....+..++++
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~-Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~ 82 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLL-EIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFK 82 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEE-CCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEE-cCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhC
Confidence 3579999997 99999999999988752 12378899 998 554432 3321 1233456677889
Q ss_pred cCCEEEEeeC--c--c-c-----------HHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 71 YSDVVVFSVK--P--Q-V-----------VKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 71 ~aDivil~v~--~--~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
++|+||++.. . . . +.++++.+..+-.++..++..++++
T Consensus 83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv 136 (329)
T 1b8p_A 83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPA 136 (329)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCch
Confidence 9999999862 1 1 1 2334445555423666777666644
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=97.70 E-value=4.1e-05 Score=55.79 Aligned_cols=94 Identities=17% Similarity=0.213 Sum_probs=71.2
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
.++|++||+ +..|..+.++|.+.|| +|+-. |...+.. .|.....+..++-. .|++++++|++.+.
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~----~V~pV-nP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~p~~~v~ 72 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGH----EFIPV-GRKKGEV-----LGKTIINERPVIEG-VDTVTLYINPQNQL 72 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTC----CEEEE-SSSCSEE-----TTEECBCSCCCCTT-CCEEEECSCHHHHG
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCC----eEEEE-CCCCCcC-----CCeeccCChHHCCC-CCEEEEEeCHHHHH
Confidence 467999998 7899999999999999 99988 7653222 57777788888767 99999999999999
Q ss_pred HHHHHhchhcCCCCEEEEEcCCCCHHHHHHHh
Q 024121 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~ 117 (272)
++++++... ....+| +++|...+++.+..
T Consensus 73 ~~v~e~~~~-g~k~v~--~~~G~~~~e~~~~a 101 (122)
T 3ff4_A 73 SEYNYILSL-KPKRVI--FNPGTENEELEEIL 101 (122)
T ss_dssp GGHHHHHHH-CCSEEE--ECTTCCCHHHHHHH
T ss_pred HHHHHHHhc-CCCEEE--ECCCCChHHHHHHH
Confidence 888886653 233333 56777655555444
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0003 Score=63.29 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=47.0
Q ss_pred CeEEEEcccHHHHH--HHHHHHhCCCCC--CCcEEEEeCCCHHHHHHHH-------H-cC----ceeecCchhhhccCCE
Q 024121 11 FILGFIGAGKMAES--IAKGVAKSGVLP--PDRICTAVHSNLKRRDAFE-------S-IG----VKVLSDNNAVVEYSDV 74 (272)
Q Consensus 11 ~~IgiIG~G~mG~~--la~~l~~~g~~~--~~~V~v~~~r~~~~~~~l~-------~-~g----~~~~~~~~~~~~~aDi 74 (272)
|||+|||.|..|.+ +...+.....++ ..+|+++ |.++++++... + .| +..+.|..+++++||+
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~-Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~ 79 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLM-DVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADF 79 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEE-CSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSE
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEE-CCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCE
Confidence 79999999998755 344454432221 2479999 99998765321 1 22 3446677899999999
Q ss_pred EEEee
Q 024121 75 VVFSV 79 (272)
Q Consensus 75 vil~v 79 (272)
||++.
T Consensus 80 Vi~~~ 84 (477)
T 3u95_A 80 IINTA 84 (477)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 99986
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.63 E-value=9.1e-05 Score=64.09 Aligned_cols=93 Identities=17% Similarity=0.285 Sum_probs=57.8
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------------cCceeec-Cchhhhcc
Q 024121 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------------IGVKVLS-DNNAVVEY 71 (272)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------------~g~~~~~-~~~~~~~~ 71 (272)
++++||+|+| +|.+|..+.+.|.+... .++...++.....-+.+.+ ..+.+.+ +.++ +.+
T Consensus 2 ~~~~kV~IiGAtG~iG~~llr~L~~~p~---~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~ 77 (350)
T 2ep5_A 2 ADKIKVSLLGSTGMVGQKMVKMLAKHPY---LELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKD 77 (350)
T ss_dssp CCCEEEEEESCSSHHHHHHHHHHTTCSS---EEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTT
T ss_pred CCCcEEEEECcCCHHHHHHHHHHHhCCC---cEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcC
Confidence 4568999999 79999999998876532 2666552222111111211 1122222 3333 478
Q ss_pred CCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCC
Q 024121 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 72 aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
+|+||+|+|.....+...... ..|..|||.++.
T Consensus 78 vDvVf~atp~~~s~~~a~~~~---~aG~~VId~s~~ 110 (350)
T 2ep5_A 78 VDVVLSALPNELAESIELELV---KNGKIVVSNASP 110 (350)
T ss_dssp CSEEEECCCHHHHHHHHHHHH---HTTCEEEECSST
T ss_pred CCEEEECCChHHHHHHHHHHH---HCCCEEEECCcc
Confidence 999999999887766666543 456778987654
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.63 E-value=9e-05 Score=63.35 Aligned_cols=94 Identities=11% Similarity=0.046 Sum_probs=57.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-----CCCCCCcEE-EEeCCCHHH---------HH-HHHHcC-cee-ecCchhhh
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKS-----GVLPPDRIC-TAVHSNLKR---------RD-AFESIG-VKV-LSDNNAVV 69 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~-----g~~~~~~V~-v~~~r~~~~---------~~-~l~~~g-~~~-~~~~~~~~ 69 (272)
|+..||+|||+|.||+.+++.|.+. |. .-+|. ++ +++++. .. ...+.| +.. ..+..+.+
T Consensus 2 Mk~irVgIiG~G~VG~~~~~~L~~~~~~~~g~--~l~lvaVa-d~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l 78 (325)
T 3ing_A 2 MKEIRIILMGTGNVGLNVLRIIDASNRRRSAF--SIKVVGVS-DSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDL 78 (325)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHHHHHC--C--EEEEEEEE-CSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGG
T ss_pred CceEEEEEEcCcHHHHHHHHHHHhchhhccCC--CEEEEEEE-ecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHh
Confidence 5668999999999999999999874 22 01444 44 776532 11 122233 211 11556666
Q ss_pred c--cCCEEEEeeCccc-HHHHHHHhchhcCCCCEEEEE
Q 024121 70 E--YSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 70 ~--~aDivil~v~~~~-~~~v~~~l~~~l~~~~~iis~ 104 (272)
. +.|+|+.|+|+.. .+...+.+...+..|+-||+.
T Consensus 79 ~~~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVta 116 (325)
T 3ing_A 79 MGEAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTA 116 (325)
T ss_dssp TTSCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEEC
T ss_pred cCCCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEc
Confidence 4 5899999998753 343344444456678888864
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00043 Score=61.20 Aligned_cols=112 Identities=17% Similarity=0.268 Sum_probs=70.0
Q ss_pred CCeEEEEcccHH-HHHHHHHHHh--CCCCCCCcEEEEeCCCHHHHHHHHH-------cCcee--ecCchhhhccCCEEEE
Q 024121 10 SFILGFIGAGKM-AESIAKGVAK--SGVLPPDRICTAVHSNLKRRDAFES-------IGVKV--LSDNNAVVEYSDVVVF 77 (272)
Q Consensus 10 ~~~IgiIG~G~m-G~~la~~l~~--~g~~~~~~V~v~~~r~~~~~~~l~~-------~g~~~--~~~~~~~~~~aDivil 77 (272)
.+||+|||+|.. +..+...|.. .+. +..+|.++ |.++++++.... ...++ +.|..+++++||+||+
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l-~~~el~L~-Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al~~AD~Vii 79 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISEDV-RIDEVIFY-DIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIF 79 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTTS-CCCEEEEE-CSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccCC-CcCEEEEE-eCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHhCCCCEEEE
Confidence 479999999984 2222334455 332 34489999 999987654222 11333 3455678999999999
Q ss_pred eeCcc------------------------------------cHHHHHHHhchhcCCCCEEEEEcCCCCH--HHHHHHhCC
Q 024121 78 SVKPQ------------------------------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTGH 119 (272)
Q Consensus 78 ~v~~~------------------------------------~~~~v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~~ 119 (272)
+.-.. .+.++++.+..+ . +..++..+|++.. ..+.+..+.
T Consensus 80 tagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~-~-~A~lin~TNPvdi~t~a~~k~~p~ 157 (417)
T 1up7_A 80 QFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKT-S-NATIVNFTNPSGHITEFVRNYLEY 157 (417)
T ss_dssp CCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHT-T-CCEEEECSSSHHHHHHHHHHTTCC
T ss_pred cCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHH-C-CEEEEEeCChHHHHHHHHHHhCCC
Confidence 98221 134555666665 4 7788888887654 334444454
Q ss_pred CCEEEE
Q 024121 120 SRFIRV 125 (272)
Q Consensus 120 ~~~~~~ 125 (272)
.++++.
T Consensus 158 ~rviG~ 163 (417)
T 1up7_A 158 EKFIGL 163 (417)
T ss_dssp SSEEEC
T ss_pred CCEEEe
Confidence 467764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00024 Score=57.57 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=55.1
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc-eee-----cCchhhhccCCEEEEeeC
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV-KVL-----SDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~-~~~-----~~~~~~~~~aDivil~v~ 80 (272)
++.|+|.|.|+ |.+|+.+++.|++.|+ +|++. +|++++.+.+...++ ... .+..+.+.++|+||-+..
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~----~V~~~-~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag 93 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGH----EPVAM-VRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAG 93 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCC
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCC----eEEEE-ECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCC
Confidence 45689999987 9999999999999999 99999 999998888776666 432 334566778999998874
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.60 E-value=9.9e-05 Score=63.38 Aligned_cols=93 Identities=16% Similarity=0.142 Sum_probs=61.0
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCC---H--HHHHHH----HHc-Cceeec--CchhhhccCCEEE
Q 024121 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSN---L--KRRDAF----ESI-GVKVLS--DNNAVVEYSDVVV 76 (272)
Q Consensus 10 ~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~---~--~~~~~l----~~~-g~~~~~--~~~~~~~~aDivi 76 (272)
|+||+|+| +|.+|..+.+.|.++.. .++.....+. . ++.... ... ...+.. +..+..+++|+||
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~---~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf 80 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPH---MNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVF 80 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTT---EEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEE
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCC---CcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEE
Confidence 37999999 59999999998887432 2565441333 1 112211 111 233332 3444448999999
Q ss_pred EeeCcccHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 77 l~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
+|+|.....+..+++. ..|..+||.++..
T Consensus 81 ~a~p~~~s~~~~~~~~---~~g~~vIDlSa~f 109 (337)
T 3dr3_A 81 LATAHEVSHDLAPQFL---EAGCVVFDLSGAF 109 (337)
T ss_dssp ECSCHHHHHHHHHHHH---HTTCEEEECSSTT
T ss_pred ECCChHHHHHHHHHHH---HCCCEEEEcCCcc
Confidence 9999888777776653 4678899988775
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00016 Score=57.97 Aligned_cols=66 Identities=20% Similarity=0.251 Sum_probs=50.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHH-HHHHHHH--cCceee-------cCchhhhccCCEEEEe
Q 024121 11 FILGFIG-AGKMAESIAKGVA-KSGVLPPDRICTAVHSNLK-RRDAFES--IGVKVL-------SDNNAVVEYSDVVVFS 78 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~-~~~~l~~--~g~~~~-------~~~~~~~~~aDivil~ 78 (272)
++|.|.| +|.+|.++++.|+ +.|+ +|++. +|+++ +.+.+.. .++... .+..++++++|+||.+
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ 80 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDM----HITLY-GRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVG 80 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCC----EEEEE-ESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEES
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCc----eEEEE-ecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEc
Confidence 4599998 5999999999999 8999 99999 99998 7777642 333321 1224567789999999
Q ss_pred eCc
Q 024121 79 VKP 81 (272)
Q Consensus 79 v~~ 81 (272)
...
T Consensus 81 ag~ 83 (221)
T 3r6d_A 81 AME 83 (221)
T ss_dssp CCC
T ss_pred CCC
Confidence 854
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0002 Score=61.32 Aligned_cols=69 Identities=19% Similarity=0.253 Sum_probs=53.2
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCH--HHHHHHHHcCceee--cCchhhh-ccCCEEEEe--eC
Q 024121 9 ESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNL--KRRDAFESIGVKVL--SDNNAVV-EYSDVVVFS--VK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~--~~~~~l~~~g~~~~--~~~~~~~-~~aDivil~--v~ 80 (272)
.++||.|||.|.+|.+ +|+.|.+.|+ +|+++ |+++ ...+.|.+.|+.+. .+.+++. .++|+||++ +|
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~----~V~~~-D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~ 77 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGF----EVSGC-DAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAK 77 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTC----EEEEE-ESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCC----EEEEE-cCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcC
Confidence 3578999999999995 9999999999 99999 8764 34567777888765 2344444 479999987 45
Q ss_pred cc
Q 024121 81 PQ 82 (272)
Q Consensus 81 ~~ 82 (272)
++
T Consensus 78 ~~ 79 (326)
T 3eag_A 78 RG 79 (326)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=4.3e-05 Score=64.87 Aligned_cols=93 Identities=13% Similarity=0.063 Sum_probs=62.7
Q ss_pred CCCCCCCeEEEEcccHH-HHHHHHHHHhCCCCCCCcEEEEeCCCHHHH----HHHHHcCcee-----e--cCchhhhccC
Q 024121 5 PIPAESFILGFIGAGKM-AESIAKGVAKSGVLPPDRICTAVHSNLKRR----DAFESIGVKV-----L--SDNNAVVEYS 72 (272)
Q Consensus 5 ~~~~~~~~IgiIG~G~m-G~~la~~l~~~g~~~~~~V~v~~~r~~~~~----~~l~~~g~~~-----~--~~~~~~~~~a 72 (272)
......+++.|||.|.| |..+++.|...|. .|+++ +|+..+. +.+...-... + .+..+.+.++
T Consensus 172 g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gA----tVtv~-nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~A 246 (320)
T 1edz_A 172 GNRLYGKKCIVINRSEIVGRPLAALLANDGA----TVYSV-DVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDS 246 (320)
T ss_dssp TCTTTTCEEEEECCCTTTHHHHHHHHHTTSC----EEEEE-CSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECCCcchHHHHHHHHHHCCC----EEEEE-eCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccC
Confidence 33456789999999986 9999999999998 99999 9984322 2221100111 1 4567888999
Q ss_pred CEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcC
Q 024121 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 73 Divil~v~~~~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
|+||.+++.... ++. ...++++.++|++..
T Consensus 247 DIVIsAtg~p~~--vI~--~e~vk~GavVIDVgi 276 (320)
T 1edz_A 247 DVVITGVPSENY--KFP--TEYIKEGAVCINFAC 276 (320)
T ss_dssp SEEEECCCCTTC--CBC--TTTSCTTEEEEECSS
T ss_pred CEEEECCCCCcc--eeC--HHHcCCCeEEEEcCC
Confidence 999999964321 011 123578888888744
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.55 E-value=4.2e-05 Score=65.83 Aligned_cols=96 Identities=13% Similarity=0.181 Sum_probs=59.0
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
+++||+|+| +|.+|..+.+.|.++++ +..++...+++. ..+.-.+....+.+.....+...++|+||.|+|.....+
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~-p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~s~~ 80 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREF-PVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGELSAK 80 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHHHHH
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCC-CCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchHHHH
Confidence 458999999 89999999999988743 222566552432 211000111112222111223568999999999887666
Q ss_pred HHHHhchhcCCCCEEEEEcCCC
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~ 108 (272)
..+.+. ..|..+|+.++..
T Consensus 81 ~a~~~~---~~G~~vId~s~~~ 99 (336)
T 2r00_A 81 WAPIAA---EAGVVVIDNTSHF 99 (336)
T ss_dssp HHHHHH---HTTCEEEECSSTT
T ss_pred HHHHHH---HcCCEEEEcCCcc
Confidence 665543 4677889876653
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00013 Score=62.58 Aligned_cols=90 Identities=11% Similarity=0.073 Sum_probs=57.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCC--------CCCCCcE-EEEeCCCHHHHHH------HH----HcCce-eec---
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSG--------VLPPDRI-CTAVHSNLKRRDA------FE----SIGVK-VLS--- 63 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g--------~~~~~~V-~v~~~r~~~~~~~------l~----~~g~~-~~~--- 63 (272)
||+.+||||||+|.||+.++..|.+.. + +| .++ +|++++.+. +. ..++. .++
T Consensus 3 mM~~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~----~vvaV~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (331)
T 3c8m_A 3 AMKTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKF----NVVFVA-DSLHSYYNERIDIGKVISYKEKGSLDSLEYESI 77 (331)
T ss_dssp -CEEEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEE----EEEEEE-CSSCEEECTTCCHHHHHHHHHTTCGGGCCSEEC
T ss_pred CCcEEeEEEEecCHHHHHHHHHHHhChHHHhcCCcE----EEEEEE-ECChHHhhcccChHHHhhhhccCCcccccCCCC
Confidence 345689999999999999999887642 3 55 456 888754432 11 12332 333
Q ss_pred Cchhhh-ccCCEEEEeeCcc----cHHHHHHHhchhcCCCCEEEEE
Q 024121 64 DNNAVV-EYSDVVVFSVKPQ----VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 64 ~~~~~~-~~aDivil~v~~~----~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|.++++ .+.|+|+.|+|+. ...+.+. ..+..|+-|++.
T Consensus 78 d~~~ll~~~iDvVv~~t~~~~~~~~~~~~~~---~AL~aGkhVvta 120 (331)
T 3c8m_A 78 SASEALARDFDIVVDATPASADGKKELAFYK---ETFENGKDVVTA 120 (331)
T ss_dssp CHHHHHHSSCSEEEECSCCCSSSHHHHHHHH---HHHHTTCEEEEC
T ss_pred CHHHHhCCCCCEEEECCCCCCccchHHHHHH---HHHHCCCeEEec
Confidence 667766 3689999999885 3333333 334577778754
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00071 Score=54.03 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=51.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCc----hhhhccCCEEEEeeC
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN----NAVVEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~----~~~~~~aDivil~v~ 80 (272)
|||.|.|+ |.+|+.+++.|++.|+ +|++. .|++++...+...++... .|. .+.+.++|+||-+..
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag 71 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGH----EVLAV-VRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALS 71 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC----EEEEE-EecccccccccCCCceEEecccccccHhhcccCCEEEECCc
Confidence 68999987 9999999999999999 99999 999988776655555432 121 256778999999873
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00021 Score=61.10 Aligned_cols=90 Identities=18% Similarity=0.189 Sum_probs=56.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC---------CCCCCCcEE-EEeCCCHHHHH-----H-HHH--cCceeec--Cchhhh
Q 024121 10 SFILGFIGAGKMAESIAKGVAKS---------GVLPPDRIC-TAVHSNLKRRD-----A-FES--IGVKVLS--DNNAVV 69 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~---------g~~~~~~V~-v~~~r~~~~~~-----~-l~~--~g~~~~~--~~~~~~ 69 (272)
++||+|||+|.||+.+++.|.+. +. +|. ++ +|++++.+ + +.. ....... |..+++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~----~lvaV~-d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll 76 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEF----KVTAVA-DSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVV 76 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCE----EEEEEE-CSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHH
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCE----EEEEEE-eCChHhccccCHHHHHhhhccCccccCCCCHHHHh
Confidence 57999999999999999999875 33 554 45 88754321 1 111 1123333 777777
Q ss_pred c--cCCEEEEeeCcccH-HHHHHHhchhcCCCCEEEEE
Q 024121 70 E--YSDVVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 70 ~--~aDivil~v~~~~~-~~v~~~l~~~l~~~~~iis~ 104 (272)
+ +.|+|+.|+|++.. .+..+.+...+..|+-|++.
T Consensus 77 ~~~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~ 114 (327)
T 3do5_A 77 RSADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTS 114 (327)
T ss_dssp HHSCCSEEEECCCCC----CHHHHHHHHHTTTCEEEEC
T ss_pred cCCCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEec
Confidence 5 58999999987642 11222233445678877754
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00044 Score=55.72 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=78.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHc-CceeecC--chhhhccCCEEEEeeCcccH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESI-GVKVLSD--NNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~-g~~~~~~--~~~~~~~aDivil~v~~~~~ 84 (272)
+.++|.|||.|.+|..-++.|++.|. +|+++ +++. +.++.+.+. ++..... ..+.+.++|+||.|+.+..+
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA----~VtVv-ap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~~~ 104 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGA----AITVV-APTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQAV 104 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCC----CEEEE-CSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCTHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCHHH
Confidence 35799999999999999999999998 99999 7654 345556553 3543211 13447899999999887777
Q ss_pred HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCchhhhcCC-ceEEEeCCCCCHHHHHHHHHHhhh
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEA-ATVMSLGGTATEEDGELIGKLFGS 160 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~g-~~~~~~~~~~~~~~~~~v~~ll~~ 160 (272)
...+.... + ..+.|+.... . ..+.++ .|+.+..| +.+.....+.++.....++.-++.
T Consensus 105 N~~I~~~a---k-~gi~VNvvD~---p------~~~~f~-----~Paiv~rg~l~iaIST~G~sP~la~~iR~~ie~ 163 (223)
T 3dfz_A 105 NKFVKQHI---K-NDQLVNMASS---F------SDGNIQ-----IPAQFSRGRLSLAISTDGASPLLTKRIKEDLSS 163 (223)
T ss_dssp HHHHHHHS---C-TTCEEEC--------------CCSEE-----CCEEEEETTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH---h-CCCEEEEeCC---c------ccCeEE-----EeeEEEeCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 66665554 2 3355544221 0 012222 12222222 333233334567777777776654
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00062 Score=54.18 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=50.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCc----hhhhccCCEEEEeeC
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN----NAVVEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~----~~~~~~aDivil~v~ 80 (272)
|||.|+|. |.+|+.+++.|++.|+ +|++. +|++++.+.+. .++... .|. .+.+.++|+||-+..
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag 70 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGH----EVTAI-VRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYG 70 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCC
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCC----EEEEE-EcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCc
Confidence 68999995 9999999999999999 99999 99988877664 444321 121 256778999999873
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00045 Score=59.59 Aligned_cols=90 Identities=19% Similarity=0.247 Sum_probs=63.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhc-cCCEEEEeeCcccH-
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVFSVKPQVV- 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDivil~v~~~~~- 84 (272)
....++++|+|+|++|...++.+...|. +|.++ |+++++.+...+.+++.. +..+++. +||+++-|-....+
T Consensus 172 ~L~GktV~I~G~GnVG~~~A~~l~~~Ga----kVvvs-D~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A~~~~I~ 245 (355)
T 1c1d_A 172 SLDGLTVLVQGLGAVGGSLASLAAEAGA----QLLVA-DTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVIT 245 (355)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-eCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhHHHhhcC
Confidence 3467899999999999999999999998 99999 999876333333676654 4566666 89999876433333
Q ss_pred HHHHHHhchhcCCCCEEEEEcCC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
.+-+.. ++ .++|+...++
T Consensus 246 ~~~~~~----lk-~~iVie~AN~ 263 (355)
T 1c1d_A 246 TEVART----LD-CSVVAGAANN 263 (355)
T ss_dssp HHHHHH----CC-CSEECCSCTT
T ss_pred HHHHhh----CC-CCEEEECCCC
Confidence 233333 33 4677766554
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00024 Score=61.61 Aligned_cols=94 Identities=7% Similarity=0.073 Sum_probs=59.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH--HHHHHHH-----------HcCceeecCchhhhccCCE
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFE-----------SIGVKVLSDNNAVVEYSDV 74 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~~l~-----------~~g~~~~~~~~~~~~~aDi 74 (272)
+++||+||| +|..|.-+.+.|.++.+ .++.....++. ++....- .....+.....+.+.++|+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~---~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~vDv 82 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHPY---IKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDI 82 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSS---EEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCTTCCE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC---ceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhcCCCE
Confidence 457999999 69999999997766432 25543324433 1222210 0122222212233579999
Q ss_pred EEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 75 vil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
||+|+|.....+....+. ..|..+||.++..
T Consensus 83 vf~a~p~~~s~~~a~~~~---~~G~~vIDlSa~~ 113 (359)
T 4dpl_A 83 IFSPLPQGAAGPVEEQFA---KEGFPVISNSPDH 113 (359)
T ss_dssp EEECCCTTTHHHHHHHHH---HTTCEEEECSSTT
T ss_pred EEECCChHHHHHHHHHHH---HCCCEEEEcCCCc
Confidence 999999988887776654 4678899987654
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00024 Score=61.61 Aligned_cols=94 Identities=7% Similarity=0.073 Sum_probs=59.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH--HHHHHHH-----------HcCceeecCchhhhccCCE
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFE-----------SIGVKVLSDNNAVVEYSDV 74 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~~l~-----------~~g~~~~~~~~~~~~~aDi 74 (272)
+++||+||| +|..|.-+.+.|.++.+ .++.....++. ++....- .....+.....+.+.++|+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~---~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~vDv 82 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHPY---IKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDI 82 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSS---EEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCTTCCE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC---ceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhcCCCE
Confidence 457999999 69999999997766432 25543324433 1222210 0122222212233579999
Q ss_pred EEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 75 vil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
||+|+|.....+....+. ..|..+||.++..
T Consensus 83 vf~a~p~~~s~~~a~~~~---~~G~~vIDlSa~~ 113 (359)
T 4dpk_A 83 IFSPLPQGAAGPVEEQFA---KEGFPVISNSPDH 113 (359)
T ss_dssp EEECCCTTTHHHHHHHHH---HTTCEEEECSSTT
T ss_pred EEECCChHHHHHHHHHHH---HCCCEEEEcCCCc
Confidence 999999988887776654 4678899987654
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00042 Score=59.49 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=57.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHH----cCc---------------------eee
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES----IGV---------------------KVL 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~l~~----~g~---------------------~~~ 62 (272)
++||||+|+|.+|..+.+.|.+... -+|...+++ +++....+.+ +|. .+.
T Consensus 3 ~ikVgI~G~GrIGr~l~R~l~~~p~---vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~ 79 (337)
T 3e5r_O 3 KIKIGINGFGRIGRLVARVALQSED---VELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVF 79 (337)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSS---EEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEE
T ss_pred ceEEEEECcCHHHHHHHHHHhCCCC---eEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEE
Confidence 3699999999999999999887532 166555363 5555545432 110 112
Q ss_pred c--Cchhh-h--ccCCEEEEeeCcccHHHHHHHhchhcCCCC--EEEEEc
Q 024121 63 S--DNNAV-V--EYSDVVVFSVKPQVVKDVAMQIRPLLSRKK--LLVSVA 105 (272)
Q Consensus 63 ~--~~~~~-~--~~aDivil~v~~~~~~~v~~~l~~~l~~~~--~iis~~ 105 (272)
. ++.++ . .++|+||.|+|.....+...... ..|. +|||..
T Consensus 80 ~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l---~aGak~VVIs~p 126 (337)
T 3e5r_O 80 GIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHL---KGGAKKVVISAP 126 (337)
T ss_dssp CCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHH---HTTCSEEEESSC
T ss_pred ecCChHHccccccCCCEEEECCCchhhHHHHHHHH---HcCCCEEEEecC
Confidence 1 44443 1 47999999999887766665443 3444 777653
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00022 Score=61.31 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH----HHHHH---HHHcCceee-cC------c
Q 024121 1 MDAFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL----KRRDA---FESIGVKVL-SD------N 65 (272)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~----~~~~~---l~~~g~~~~-~~------~ 65 (272)
|..-+.+|..|+|.|.|+ |.+|+.+++.|++.|+ +|++. .|++ ++.+. +...++.+. .| .
T Consensus 1 M~~s~~~M~~~~IlVtGatG~iG~~l~~~L~~~g~----~V~~l-~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l 75 (346)
T 3i6i_A 1 MTVSPVPSPKGRVLIAGATGFIGQFVATASLDAHR----PTYIL-ARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAM 75 (346)
T ss_dssp ----------CCEEEECTTSHHHHHHHHHHHHTTC----CEEEE-ECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHH
T ss_pred CCCCCCCCCCCeEEEECCCcHHHHHHHHHHHHCCC----CEEEE-ECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHH
Confidence 444555667789999998 9999999999999999 99999 8866 44443 333565532 12 2
Q ss_pred hhhhc--cCCEEEEeeCcc---cHHHHHHHhc
Q 024121 66 NAVVE--YSDVVVFSVKPQ---VVKDVAMQIR 92 (272)
Q Consensus 66 ~~~~~--~aDivil~v~~~---~~~~v~~~l~ 92 (272)
.++++ ++|+||-+.... ....+++...
T Consensus 76 ~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~ 107 (346)
T 3i6i_A 76 EKILKEHEIDIVVSTVGGESILDQIALVKAMK 107 (346)
T ss_dssp HHHHHHTTCCEEEECCCGGGGGGHHHHHHHHH
T ss_pred HHHHhhCCCCEEEECCchhhHHHHHHHHHHHH
Confidence 44567 899999998643 3345555444
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0006 Score=57.94 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=63.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC---HHHHHHHHH-----cCc--eee--cC---chhhhccC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN---LKRRDAFES-----IGV--KVL--SD---NNAVVEYS 72 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~---~~~~~~l~~-----~g~--~~~--~~---~~~~~~~a 72 (272)
...+++.|+|+|-+|.+++..|.+.|. .+|+++ +|+ .++++++.+ .+. ... ++ ..+.+.++
T Consensus 152 l~gk~~lVlGaGG~g~aia~~L~~~Ga---~~V~i~-nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 227 (315)
T 3tnl_A 152 IIGKKMTICGAGGAATAICIQAALDGV---KEISIF-NRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAES 227 (315)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-ECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTC
T ss_pred ccCCEEEEECCChHHHHHHHHHHHCCC---CEEEEE-ECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCC
Confidence 456899999999999999999999986 379999 999 888877764 232 221 11 23456789
Q ss_pred CEEEEeeCcccHHH----HHHHhchhcCCCCEEEEEc
Q 024121 73 DVVVFSVKPQVVKD----VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 73 Divil~v~~~~~~~----v~~~l~~~l~~~~~iis~~ 105 (272)
|+||-|+|...... .+. ....++++.+|+|+.
T Consensus 228 DiIINaTp~Gm~~~~~~~p~~-~~~~l~~~~~V~Dlv 263 (315)
T 3tnl_A 228 VIFTNATGVGMKPFEGETLLP-SADMLRPELIVSDVV 263 (315)
T ss_dssp SEEEECSSTTSTTSTTCCSCC-CGGGCCTTCEEEESC
T ss_pred CEEEECccCCCCCCCCCCCCC-cHHHcCCCCEEEEec
Confidence 99999998542211 010 122356777777764
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0006 Score=59.15 Aligned_cols=94 Identities=15% Similarity=0.164 Sum_probs=68.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC----HHH----H----HHHHH-cC-ceeecCchhhhccC
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN----LKR----R----DAFES-IG-VKVLSDNNAVVEYS 72 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~----~~~----~----~~l~~-~g-~~~~~~~~~~~~~a 72 (272)
.....||.|+|+|.+|..+++.|...|. .+|+++ ||+ .++ + +.+.+ .+ .....++.++++++
T Consensus 189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~---~~I~v~-Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~A 264 (388)
T 1vl6_A 189 KIEEVKVVVNGIGAAGYNIVKFLLDLGV---KNVVAV-DRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGA 264 (388)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTC---CEEEEE-ETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTC
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCCC---CeEEEE-ECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccC
Confidence 4466899999999999999999999986 379999 988 544 2 22333 12 22245678999999
Q ss_pred CEEEEeeCccc-HHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 73 DVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 73 Divil~v~~~~-~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
|++|-+..|.. -+++++.+. ++.+|+.++++.
T Consensus 265 DVlIG~Sap~l~t~emVk~Ma----~~pIIfalSNPt 297 (388)
T 1vl6_A 265 DFFIGVSRGNILKPEWIKKMS----RKPVIFALANPV 297 (388)
T ss_dssp SEEEECSCSSCSCHHHHTTSC----SSCEEEECCSSS
T ss_pred CEEEEeCCCCccCHHHHHhcC----CCCEEEEcCCCC
Confidence 99998875443 466766643 566888887765
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00029 Score=58.26 Aligned_cols=73 Identities=12% Similarity=0.201 Sum_probs=56.9
Q ss_pred CCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
...+++.|||.|. +|.+++..|.+.|. .|+++ ++.. .+..+.+++||+||.+++...+
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gA----tVtv~-~~~t--------------~~L~~~~~~ADIVI~Avg~p~~-- 206 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNY----TVSVC-HSKT--------------KDIGSMTRSSKIVVVAVGRPGF-- 206 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTC----EEEEE-CTTC--------------SCHHHHHHHSSEEEECSSCTTC--
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCC----eEEEE-eCCc--------------ccHHHhhccCCEEEECCCCCcc--
Confidence 3568999999985 89999999999998 99999 7642 4566788999999999964321
Q ss_pred HHHHhchhcCCCCEEEEE
Q 024121 87 VAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~ 104 (272)
+. ...++++.+|||+
T Consensus 207 -I~--~~~vk~GavVIDv 221 (276)
T 3ngx_A 207 -LN--REMVTPGSVVIDV 221 (276)
T ss_dssp -BC--GGGCCTTCEEEEC
T ss_pred -cc--HhhccCCcEEEEe
Confidence 11 1346889999986
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00052 Score=58.24 Aligned_cols=94 Identities=18% Similarity=0.224 Sum_probs=62.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC---HHHHHHHHH-----cCce--eec--Cc---hhhhccC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN---LKRRDAFES-----IGVK--VLS--DN---NAVVEYS 72 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~---~~~~~~l~~-----~g~~--~~~--~~---~~~~~~a 72 (272)
...+++.|+|+|-+|.+++..|.+.|. .+|+++ +|+ .++++++.+ .+.. ... +. .+.+.++
T Consensus 146 l~gk~~lVlGAGGaaraia~~L~~~G~---~~v~v~-nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~ 221 (312)
T 3t4e_A 146 MRGKTMVLLGAGGAATAIGAQAAIEGI---KEIKLF-NRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASA 221 (312)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-ECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHC
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHcCC---CEEEEE-ECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCc
Confidence 356799999999999999999999986 379999 999 888877764 2322 221 21 3446789
Q ss_pred CEEEEeeCcccHHHHHHHh---chhcCCCCEEEEEc
Q 024121 73 DVVVFSVKPQVVKDVAMQI---RPLLSRKKLLVSVA 105 (272)
Q Consensus 73 Divil~v~~~~~~~v~~~l---~~~l~~~~~iis~~ 105 (272)
|+||-|+|......--..+ ...++++.+++|+.
T Consensus 222 DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v 257 (312)
T 3t4e_A 222 DILTNGTKVGMKPLENESLIGDVSLLRPELLVTECV 257 (312)
T ss_dssp SEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECC
T ss_pred eEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEec
Confidence 9999998754311000011 12356677777764
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00055 Score=53.78 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=48.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-c------CchhhhccCCEEEEeeC
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S------DNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~------~~~~~~~~aDivil~v~ 80 (272)
.|+|.|.|. |.+|+.+++.|.+.|+ +|++. +|++++...+...++... . +..++++++|+||-+..
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGY----EVTVL-VRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC----eEEEE-EeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 378999987 9999999999999999 99999 998876533212233321 1 22345678999998874
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00015 Score=62.87 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=59.0
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 10 ~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
.+||+||| +|..|.-|.+.|.+.+| +..++.....++. .+.-.+......+.....+...++|+||.|+|.....+.
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~-p~~el~~~as~~saG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~~ 80 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTL-PIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKY 80 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCC-CEEEEEEEECTTTTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCC-CcEEEEEEEccccCCCcceecCCCceEeeCCHHHhcCCCEEEECCChHhHHHH
Confidence 47999999 69999999998888765 3234444423221 111001101122221112346789999999998877777
Q ss_pred HHHhchhcCCCCEEEEEcCCC
Q 024121 88 AMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~ 108 (272)
.+.+. ..|..+||.++..
T Consensus 81 a~~~~---~~G~~vIDlSa~~ 98 (366)
T 3pwk_A 81 APYAV---KAGVVVVDNTSYF 98 (366)
T ss_dssp HHHHH---HTTCEEEECSSTT
T ss_pred HHHHH---HCCCEEEEcCCcc
Confidence 76653 4677899987653
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00031 Score=58.84 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=56.7
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
....+++.|||.|. +|.+++..|.+.|. .|+++ +|....++ ..+.+++||+||.+++...+
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA----tVtv~-~~~T~~l~------------l~~~~~~ADIVI~Avg~p~~- 223 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENA----TVTIV-HSGTSTED------------MIDYLRTADIVIAAMGQPGY- 223 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTC----EEEEE-CTTSCHHH------------HHHHHHTCSEEEECSCCTTC-
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC----eEEEE-eCCCCCch------------hhhhhccCCEEEECCCCCCC-
Confidence 34668999999987 79999999999998 99999 87432211 12678999999999974321
Q ss_pred HHHHHhchhcCCCCEEEEE
Q 024121 86 DVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~ 104 (272)
+. ...++++.+|||+
T Consensus 224 --I~--~~~vk~GavVIDv 238 (300)
T 4a26_A 224 --VK--GEWIKEGAAVVDV 238 (300)
T ss_dssp --BC--GGGSCTTCEEEEC
T ss_pred --Cc--HHhcCCCcEEEEE
Confidence 11 1336889999986
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00079 Score=55.39 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=55.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHHHHH------cCceee--
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDAFES------IGVKVL-- 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~~l~~------~g~~~~-- 62 (272)
..+|.|||+|.+|+.++.+|...|. .+++++ |++. .|++.+++ .++.+.
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gv---g~i~lv-D~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 103 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGV---GTLVLA-DDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL 103 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTC---SEEEEE-CCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCC---CeEEEE-eCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 4689999999999999999999997 378888 7643 33333332 133321
Q ss_pred c------CchhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 63 S------DNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 63 ~------~~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
. +..+.++++|+||.|++....+..+.+... ..+..+|+.
T Consensus 104 ~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~--~~~~p~i~~ 149 (251)
T 1zud_1 104 QQRLTGEALKDAVARADVVLDCTDNMATRQEINAACV--ALNTPLITA 149 (251)
T ss_dssp CSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHHHH--HTTCCEEEE
T ss_pred eccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHH--HhCCCEEEE
Confidence 1 123456678888888865544545544332 133445543
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00094 Score=57.97 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=60.7
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCC-CcEEEE-eCCCH--HHHH----HHHH--c----CceeecCchhhhccCC
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPP-DRICTA-VHSNL--KRRD----AFES--I----GVKVLSDNNAVVEYSD 73 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~-~~V~v~-~~r~~--~~~~----~l~~--~----g~~~~~~~~~~~~~aD 73 (272)
+.+||+||| +|.+|.+++..|...+.+.. .+|.++ .+.++ ++++ +|.. . ++.+..+..+.+++||
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daD 110 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD 110 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCC
Confidence 457999999 79999999999998876542 236654 03322 2222 2222 1 2344555567799999
Q ss_pred EEEEee--C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 74 VVVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 74 ivil~v--~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
+||++- | |. . ++++.+.+..+..|+.+++-.++++.
T Consensus 111 vVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD 162 (375)
T 7mdh_A 111 WALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN 162 (375)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchh
Confidence 999974 3 21 1 12223334444357777776666543
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00045 Score=57.29 Aligned_cols=74 Identities=15% Similarity=0.203 Sum_probs=57.0
Q ss_pred CCCCCeEEEEcccHH-HHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc
Q 024121 7 PAESFILGFIGAGKM-AESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 7 ~~~~~~IgiIG~G~m-G~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~ 83 (272)
....+++.|||.|++ |..++..|... |. .|+++ +++. .+..+.+++||+||.+++...
T Consensus 155 ~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~a----tVtv~-h~~t--------------~~L~~~~~~ADIVI~Avg~p~ 215 (281)
T 2c2x_A 155 SIAGAHVVVIGRGVTVGRPLGLLLTRRSENA----TVTLC-HTGT--------------RDLPALTRQADIVVAAVGVAH 215 (281)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHTSTTTCC----EEEEE-CTTC--------------SCHHHHHTTCSEEEECSCCTT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHhcCCCCC----EEEEE-ECch--------------hHHHHHHhhCCEEEECCCCCc
Confidence 456789999999986 99999999998 66 99999 7664 356677899999999996433
Q ss_pred HHHHHHHhchhcCCCCEEEEE
Q 024121 84 VKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~ 104 (272)
+ +. ...++++.+|||+
T Consensus 216 ~---I~--~~~vk~GavVIDV 231 (281)
T 2c2x_A 216 L---LT--ADMVRPGAAVIDV 231 (281)
T ss_dssp C---BC--GGGSCTTCEEEEC
T ss_pred c---cC--HHHcCCCcEEEEc
Confidence 2 11 1235788899986
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00068 Score=56.37 Aligned_cols=74 Identities=12% Similarity=0.227 Sum_probs=57.3
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
....+++.|||.|. +|.+++..|...|. .|+++ ++.. .+..+.+++||+||.+++...+
T Consensus 158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA----tVtv~-hs~t--------------~~L~~~~~~ADIVI~Avg~p~~- 217 (285)
T 3l07_A 158 KTEGAYAVVVGASNVVGKPVSQLLLNAKA----TVTTC-HRFT--------------TDLKSHTTKADILIVAVGKPNF- 217 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTC----EEEEE-CTTC--------------SSHHHHHTTCSEEEECCCCTTC-
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC----eEEEE-eCCc--------------hhHHHhcccCCEEEECCCCCCC-
Confidence 45678999999987 69999999999998 99999 7652 3556778999999999964321
Q ss_pred HHHHHhchhcCCCCEEEEE
Q 024121 86 DVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~ 104 (272)
+. ...++++.+|||+
T Consensus 218 --I~--~~~vk~GavVIDv 232 (285)
T 3l07_A 218 --IT--ADMVKEGAVVIDV 232 (285)
T ss_dssp --BC--GGGSCTTCEEEEC
T ss_pred --CC--HHHcCCCcEEEEe
Confidence 11 1345789899986
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0024 Score=54.92 Aligned_cols=102 Identities=14% Similarity=0.157 Sum_probs=63.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCHH--HHH----HHHH------cCceeecCchhhhc
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLK--RRD----AFES------IGVKVLSDNNAVVE 70 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~~--~~~----~l~~------~g~~~~~~~~~~~~ 70 (272)
.++..||+|+|+ |.+|++++..|.....+. +.++.++ |.++. +++ ++.. .++.+..+..++++
T Consensus 21 s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~-Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~ 99 (345)
T 4h7p_A 21 SMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLL-DIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFD 99 (345)
T ss_dssp -CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEE-CCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTT
T ss_pred CCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEE-CCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhC
Confidence 344569999996 999999999888765432 1268899 98753 222 2222 12345566778899
Q ss_pred cCCEEEEee--C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 71 YSDVVVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 71 ~aDivil~v--~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
+||+||++- | |. . ++++.+.+..+-.|+.+|+-.++++.
T Consensus 100 ~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd 154 (345)
T 4h7p_A 100 GVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPAN 154 (345)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcc
Confidence 999999974 3 21 1 22333445555457766665666543
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00037 Score=60.78 Aligned_cols=95 Identities=16% Similarity=0.106 Sum_probs=59.2
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEE-EEe-CCCHH-HHHHHHH-----------cCceeec-Cchhhhcc
Q 024121 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRIC-TAV-HSNLK-RRDAFES-----------IGVKVLS-DNNAVVEY 71 (272)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~-v~~-~r~~~-~~~~l~~-----------~g~~~~~-~~~~~~~~ 71 (272)
|+++||+||| +|..|.-|.+.|.++.+ .++. ++. .|+.- +..+... ....+.. +..+.+.+
T Consensus 17 M~~~kVaIvGAtG~vG~ell~lL~~hp~---~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~ 93 (381)
T 3hsk_A 17 MSVKKAGVLGATGSVGQRFILLLSKHPE---FEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLE 93 (381)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCSS---EEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGGG
T ss_pred CCccEEEEECCCChHHHHHHHHHHcCCC---ceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhccc
Confidence 4557899999 59999999998777543 2553 321 23322 1221100 1122211 22214678
Q ss_pred CCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 72 aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
+|+||+|+|.....++...+. ..|..|||.++..
T Consensus 94 ~Dvvf~alp~~~s~~~~~~~~---~~G~~VIDlSa~f 127 (381)
T 3hsk_A 94 CDVVFSGLDADVAGDIEKSFV---EAGLAVVSNAKNY 127 (381)
T ss_dssp CSEEEECCCHHHHHHHHHHHH---HTTCEEEECCSTT
T ss_pred CCEEEECCChhHHHHHHHHHH---hCCCEEEEcCCcc
Confidence 999999999988888877654 4678899987654
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00015 Score=58.22 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=49.9
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-------cCchhhhccCCEEEEeeC
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDivil~v~ 80 (272)
++|||.|.| +|.+|+.+++.|.+.|+ +|++. +|++++...+. .++... .+..++++++|+||-+..
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~ 76 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRGF----EVTAV-VRHPEKIKIEN-EHLKVKKADVSSLDEVCEVCKGADAVISAFN 76 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTTC----EEEEE-CSCGGGCCCCC-TTEEEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC----EEEEE-EcCcccchhcc-CceEEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence 358999998 59999999999999999 99999 99987654332 233221 123456778999999874
Q ss_pred c
Q 024121 81 P 81 (272)
Q Consensus 81 ~ 81 (272)
+
T Consensus 77 ~ 77 (227)
T 3dhn_A 77 P 77 (227)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0015 Score=55.96 Aligned_cols=86 Identities=10% Similarity=0.047 Sum_probs=58.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cC---c---hhh-hccCCEEEEeeCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD---N---NAV-VEYSDVVVFSVKP 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~---~---~~~-~~~aDivil~v~~ 81 (272)
.++|.|+|+|..|..+++.|.+.| .|.+. ++++++.+ +.+.++.+. .| . .++ ++++|.+++++++
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g-----~v~vi-d~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~ 187 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSE-----VFVLA-EDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLES 187 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSC-----EEEEE-SCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSS
T ss_pred cCCEEEECCcHHHHHHHHHHHhCC-----cEEEE-eCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCc
Confidence 457999999999999999998876 27788 99999998 777666532 22 1 122 5689999999987
Q ss_pred ccHHHHHHHhchhcCCCCEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~ii 102 (272)
+...-..-.....+.++..++
T Consensus 188 d~~n~~~~~~ar~~~~~~~ii 208 (336)
T 1lnq_A 188 DSETIHCILGIRKIDESVRII 208 (336)
T ss_dssp HHHHHHHHHHHHTTCTTSEEE
T ss_pred cHHHHHHHHHHHHHCCCCeEE
Confidence 644332222333345653444
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0019 Score=55.22 Aligned_cols=89 Identities=11% Similarity=0.182 Sum_probs=58.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHHHH----H--cCceee--
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDAFE----S--IGVKVL-- 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~~l~----~--~g~~~~-- 62 (272)
..||.|||+|-+|+.++.+|...|. .+++++ |++. .|++.++ + .++.+.
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGV---g~Itlv-D~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~ 109 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGV---RKITFV-DNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV 109 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---CEEEEE-CCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---CEEEEe-cCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEE
Confidence 4789999999999999999999997 378888 7643 2333332 2 233321
Q ss_pred c---------------------CchhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 63 S---------------------DNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 63 ~---------------------~~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
. +..+.++++|+||.|+.....+..+..+.. ..++.+|+.
T Consensus 110 ~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~tR~lin~~c~--~~~~plI~a 170 (340)
T 3rui_A 110 KLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSN--IENKTVINA 170 (340)
T ss_dssp CCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTGGGHHHHHHHH--HTTCEEEEE
T ss_pred eccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHHHHHHHHHHHH--HcCCcEEEe
Confidence 1 123567789999999866555555554432 245566653
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00078 Score=56.15 Aligned_cols=66 Identities=17% Similarity=0.066 Sum_probs=51.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcCceee-c------CchhhhccCCEEEEeeCc
Q 024121 11 FILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVL-S------DNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~------~~~~~~~~aDivil~v~~ 81 (272)
|||.|.|. |.+|+.+++.|.+. |+ +|.+. .|++++...+...++.+. . +..++++++|+||.+...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~----~V~~~-~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHID----HFHIG-VRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCT----TEEEE-ESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCC----cEEEE-ECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 68999985 99999999999987 88 99999 999887665555555432 1 234567789999998743
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0022 Score=56.84 Aligned_cols=96 Identities=15% Similarity=0.257 Sum_probs=64.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeC----CC----HH-HHHHHHH--------cCce-eecCchhhh
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH----SN----LK-RRDAFES--------IGVK-VLSDNNAVV 69 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~----r~----~~-~~~~l~~--------~g~~-~~~~~~~~~ 69 (272)
....||.|+|+|.+|.+++..|.+.|. ++.+|+++ | |+ .. +.+.+.. .+.. ...+..+++
T Consensus 184 l~~~rvlvlGAGgAg~aia~~L~~~G~-~~~~I~vv-d~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l 261 (439)
T 2dvm_A 184 ISEITLALFGAGAAGFATLRILTEAGV-KPENVRVV-ELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEAL 261 (439)
T ss_dssp TTTCCEEEECCSHHHHHHHHHHHHTTC-CGGGEEEE-EEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHH
T ss_pred ccCCEEEEECccHHHHHHHHHHHHcCC-CcCeEEEE-EccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHh
Confidence 356789999999999999999999984 33489999 8 76 32 2111221 1111 123567788
Q ss_pred ccCCEEEEeeCc--ccHH-HHHHHhchhcCCCCEEEEEcCCCC
Q 024121 70 EYSDVVVFSVKP--QVVK-DVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 70 ~~aDivil~v~~--~~~~-~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
+++|+||-+++. ..+. +.+ ..+.++.+|+++.++.+
T Consensus 262 ~~aDVlInaT~~~~G~~~~e~v----~~m~~~~iVfDLynP~~ 300 (439)
T 2dvm_A 262 KDADVLISFTRPGPGVIKPQWI----EKMNEDAIVFPLANPVP 300 (439)
T ss_dssp TTCSEEEECSCCCSSSSCHHHH----TTSCTTCEEEECCSSSC
T ss_pred ccCCEEEEcCCCccCCCChHHH----HhcCCCCEEEECCCCCC
Confidence 899999999976 4443 222 23557778888866654
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00074 Score=56.17 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
....+++.|||.|. .|.+++..|...|. .|+++ +++. .+..+.+++||+||.+++...+
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA----tVtv~-h~~t--------------~~L~~~~~~ADIVI~Avg~p~~- 216 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGA----TVSVC-HIKT--------------KDLSLYTRQADLIIVAAGCVNL- 216 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTC----EEEEE-CTTC--------------SCHHHHHTTCSEEEECSSCTTC-
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC----eEEEE-eCCc--------------hhHHHHhhcCCEEEECCCCCCc-
Confidence 45678999999987 69999999999998 99999 7653 3556778999999999964321
Q ss_pred HHHHHhchhcCCCCEEEEE
Q 024121 86 DVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~ 104 (272)
+. ...++++.+|||+
T Consensus 217 --I~--~~~vk~GavVIDV 231 (285)
T 3p2o_A 217 --LR--SDMVKEGVIVVDV 231 (285)
T ss_dssp --BC--GGGSCTTEEEEEC
T ss_pred --CC--HHHcCCCeEEEEe
Confidence 11 1346789888886
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00083 Score=56.34 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=61.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC----------ceeecCchhhhccCCEEE
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----------VKVLSDNNAVVEYSDVVV 76 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g----------~~~~~~~~~~~~~aDivi 76 (272)
...+++.|+|+|.+|.+++..|.+.| +|+++ +|++++++.+.+ .+ +.+ .+..+.+.++|+||
T Consensus 126 l~~k~vlV~GaGgiG~aia~~L~~~G-----~V~v~-~r~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~~~~~~DilV 198 (287)
T 1nvt_A 126 VKDKNIVIYGAGGAARAVAFELAKDN-----NIIIA-NRTVEKAEALAKEIAEKLNKKFGEEVKF-SGLDVDLDGVDIII 198 (287)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHTSSS-----EEEEE-CSSHHHHHHHHHHHHHHHTCCHHHHEEE-ECTTCCCTTCCEEE
T ss_pred cCCCEEEEECchHHHHHHHHHHHHCC-----CEEEE-ECCHHHHHHHHHHHhhhcccccceeEEE-eeHHHhhCCCCEEE
Confidence 35678999999999999999999886 79999 999988877654 11 122 22245567899999
Q ss_pred EeeCcccHHH---H-HHHhchhcCCCCEEEEEc
Q 024121 77 FSVKPQVVKD---V-AMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 77 l~v~~~~~~~---v-~~~l~~~l~~~~~iis~~ 105 (272)
.+++...... . +. -...++++.+++++.
T Consensus 199 n~ag~~~~~~~~~~~~~-~~~~l~~~~~v~Dv~ 230 (287)
T 1nvt_A 199 NATPIGMYPNIDVEPIV-KAEKLREDMVVMDLI 230 (287)
T ss_dssp ECSCTTCTTCCSSCCSS-CSTTCCSSSEEEECC
T ss_pred ECCCCCCCCCCCCCCCC-CHHHcCCCCEEEEee
Confidence 9987543210 0 00 012355677777764
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00071 Score=56.33 Aligned_cols=74 Identities=14% Similarity=0.177 Sum_probs=57.3
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
....+++.|||.|+ .|..++..|...|. .|+++ ++.. .+..+.+++||+||.+++...+
T Consensus 156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gA----tVtv~-hs~t--------------~~L~~~~~~ADIVI~Avg~p~l- 215 (288)
T 1b0a_A 156 DTFGLNAVVIGASNIVGRPMSMELLLAGC----TTTVT-HRFT--------------KNLRHHVENADLLIVAVGKPGF- 215 (288)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTC----EEEEE-CSSC--------------SCHHHHHHHCSEEEECSCCTTC-
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHCCC----eEEEE-eCCc--------------hhHHHHhccCCEEEECCCCcCc-
Confidence 45668999999997 59999999999998 99999 7654 3556778899999999964331
Q ss_pred HHHHHhchhcCCCCEEEEE
Q 024121 86 DVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~ 104 (272)
+. ...++++.+|||+
T Consensus 216 --I~--~~~vk~GavVIDV 230 (288)
T 1b0a_A 216 --IP--GDWIKEGAIVIDV 230 (288)
T ss_dssp --BC--TTTSCTTCEEEEC
T ss_pred --CC--HHHcCCCcEEEEc
Confidence 11 1235789999986
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0011 Score=55.60 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=54.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCC------HHHHHHH---HHcCceee-c------CchhhhccC
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN------LKRRDAF---ESIGVKVL-S------DNNAVVEYS 72 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~------~~~~~~l---~~~g~~~~-~------~~~~~~~~a 72 (272)
+++|.|+|+ |.+|+++++.|++.|+ +|++. .|+ +++.+.+ ...|+.+. . +..++++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~l-~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~ 78 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGH----PTFLL-VRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV 78 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC----CEEEE-CCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC----CEEEE-ECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCC
Confidence 578999986 9999999999999999 99999 887 3444333 23465432 1 224556789
Q ss_pred CEEEEeeCcc---cHHHHHHHhc
Q 024121 73 DVVVFSVKPQ---VVKDVAMQIR 92 (272)
Q Consensus 73 Divil~v~~~---~~~~v~~~l~ 92 (272)
|+||.+.... ....+++...
T Consensus 79 d~vi~~a~~~~~~~~~~l~~aa~ 101 (308)
T 1qyc_A 79 DVVISTVGSLQIESQVNIIKAIK 101 (308)
T ss_dssp SEEEECCCGGGSGGGHHHHHHHH
T ss_pred CEEEECCcchhhhhHHHHHHHHH
Confidence 9999998543 3345554443
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0023 Score=54.38 Aligned_cols=73 Identities=12% Similarity=0.142 Sum_probs=54.2
Q ss_pred CCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------cCceee--cC------c
Q 024121 2 DAFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------IGVKVL--SD------N 65 (272)
Q Consensus 2 ~~~~~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------~g~~~~--~~------~ 65 (272)
.+++..++.|+|.|.|+ |-+|+.+++.|++.|+ +|++. +|++++.+.+.+ .++... .| .
T Consensus 3 ~~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~ 77 (342)
T 1y1p_A 3 IDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGY----KVRGT-ARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAY 77 (342)
T ss_dssp STTCSSCTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTT
T ss_pred CCcccCCCCCEEEEECCccHHHHHHHHHHHHCCC----EEEEE-eCCcccHHHHHHHhhccCCCceEEEEecCCcChHHH
Confidence 45666777889999987 9999999999999999 99999 998876654432 133322 12 2
Q ss_pred hhhhccCCEEEEee
Q 024121 66 NAVVEYSDVVVFSV 79 (272)
Q Consensus 66 ~~~~~~aDivil~v 79 (272)
.++++++|+||-+.
T Consensus 78 ~~~~~~~d~vih~A 91 (342)
T 1y1p_A 78 DEVIKGAAGVAHIA 91 (342)
T ss_dssp TTTTTTCSEEEECC
T ss_pred HHHHcCCCEEEEeC
Confidence 34556789999876
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0026 Score=54.76 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=56.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeC-C-CHHHHHHHHH----cC-------------------cee
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH-S-NLKRRDAFES----IG-------------------VKV 61 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~-r-~~~~~~~l~~----~g-------------------~~~ 61 (272)
.++++||||+|.|.+|.-+.+.|.++.. -+|...++ + +.+....+.+ .| +.+
T Consensus 14 ~~~~ikVgI~G~G~iGr~llR~l~~~p~---veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v 90 (354)
T 3cps_A 14 LYFQGTLGINGFGRIGRLVLRACMERND---ITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKV 90 (354)
T ss_dssp ----CEEEEECCSHHHHHHHHHHHTCSS---CEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEE
T ss_pred cCcceEEEEECCCHHHHHHHHHHHcCCC---eEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEE
Confidence 4456799999999999999999887632 27766535 3 3333333322 11 112
Q ss_pred ec--Cchhhh---ccCCEEEEeeCcccHHHHHHHhchhcCCCC--EEEEEcC
Q 024121 62 LS--DNNAVV---EYSDVVVFSVKPQVVKDVAMQIRPLLSRKK--LLVSVAA 106 (272)
Q Consensus 62 ~~--~~~~~~---~~aDivil~v~~~~~~~v~~~l~~~l~~~~--~iis~~~ 106 (272)
.. ++.++- .++|+||.|+|...-.+..... +..|. +|||..+
T Consensus 91 ~~~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~---l~~GakkvVId~pa 139 (354)
T 3cps_A 91 FQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLH---LKGGAKKVIISAPP 139 (354)
T ss_dssp ECCSCGGGCCHHHHTCCEEEECSSSCCSHHHHGGG---GTTTCSEEEESSCC
T ss_pred EecCChHHCCcccCCCCEEEECCCchhhHHHHHHH---HHcCCcEEEEeCCC
Confidence 21 344321 4799999999988776666544 34454 8887643
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.001 Score=55.77 Aligned_cols=75 Identities=12% Similarity=0.186 Sum_probs=58.0
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
....+++.|||.|+ +|..++..|...|. .|+++ +++. .+..+.+++||+||.+++...+
T Consensus 162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gA----tVtv~-hs~t--------------~~L~~~~~~ADIVI~Avg~p~~- 221 (301)
T 1a4i_A 162 PIAGRHAVVVGRSKIVGAPMHDLLLWNNA----TVTTC-HSKT--------------AHLDEEVNKGDILVVATGQPEM- 221 (301)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTC----EEEEE-CTTC--------------SSHHHHHTTCSEEEECCCCTTC-
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCC----eEEEE-ECCc--------------ccHHHHhccCCEEEECCCCccc-
Confidence 45678999999996 69999999999998 99999 7552 3567778999999999964321
Q ss_pred HHHHHhchhcCCCCEEEEEc
Q 024121 86 DVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~ 105 (272)
+. ...++++.+|||+.
T Consensus 222 --I~--~~~vk~GavVIDVg 237 (301)
T 1a4i_A 222 --VK--GEWIKPGAIVIDCG 237 (301)
T ss_dssp --BC--GGGSCTTCEEEECC
T ss_pred --CC--HHHcCCCcEEEEcc
Confidence 11 12357899999873
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0013 Score=55.30 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=49.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCC-----HHHHHHHH---HcCceee----c---CchhhhccCC
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFE---SIGVKVL----S---DNNAVVEYSD 73 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~-----~~~~~~l~---~~g~~~~----~---~~~~~~~~aD 73 (272)
+|+|.|.|. |.+|+++++.|++.|+ +|++. .|+ +++.+.+. ..++.+. . +..++++++|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d 78 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGH----PTYVL-FRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD 78 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC----CEEEE-CCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC----cEEEE-ECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCC
Confidence 578999985 9999999999999999 99999 898 45544432 3455432 1 2345677899
Q ss_pred EEEEeeC
Q 024121 74 VVVFSVK 80 (272)
Q Consensus 74 ivil~v~ 80 (272)
+||.+..
T Consensus 79 ~vi~~a~ 85 (313)
T 1qyd_A 79 VVISALA 85 (313)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9999874
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00028 Score=58.83 Aligned_cols=63 Identities=16% Similarity=0.312 Sum_probs=46.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-------cCchhhhcc-CCEEEEee
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEY-SDVVVFSV 79 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~-aDivil~v 79 (272)
|++|||.|.|+|-+|+.++..|++.|+ +|++. +|++++.. .++... .+..++++. +|+||-+.
T Consensus 1 M~~~~ilVtGaG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a 71 (286)
T 3gpi_A 1 MSLSKILIAGCGDLGLELARRLTAQGH----EVTGL-RRSAQPMP----AGVQTLIADVTRPDTLASIVHLRPEILVYCV 71 (286)
T ss_dssp -CCCCEEEECCSHHHHHHHHHHHHTTC----CEEEE-ECTTSCCC----TTCCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCccccc----cCCceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence 356899999999999999999999999 99999 88876521 232211 122344555 99999876
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00072 Score=54.00 Aligned_cols=63 Identities=13% Similarity=0.221 Sum_probs=47.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-----ec---CchhhhccCCEEEEeeC
Q 024121 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----LS---DNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----~~---~~~~~~~~aDivil~v~ 80 (272)
|||.|.| +|.+|+.+++.|++.|+ +|++. +|++++.+.+ .++.. .+ +..++++++|+||-+..
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag 72 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDY----QIYAG-ARKVEQVPQY--NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSG 72 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSC----EEEEE-ESSGGGSCCC--TTEEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCccchhhc--CCceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence 6899998 69999999999999999 99999 9998765433 23321 11 22345678999998874
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.001 Score=56.31 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=54.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HHHH---HHHcCceee-c------CchhhhccCCEEEE
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDA---FESIGVKVL-S------DNNAVVEYSDVVVF 77 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~---l~~~g~~~~-~------~~~~~~~~aDivil 77 (272)
+++|.|.|+ |.+|+++++.|++.|+ +|++. +|+++ +.+. +...++.+. . +..++++++|+||.
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~l-~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~ 85 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGH----PTYVF-TRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVIS 85 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTC----CEEEE-ECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCC----cEEEE-ECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 458999985 9999999999999999 99999 88764 3332 333565432 1 23456778999999
Q ss_pred eeCcc---cHHHHHHHhc
Q 024121 78 SVKPQ---VVKDVAMQIR 92 (272)
Q Consensus 78 ~v~~~---~~~~v~~~l~ 92 (272)
+.... ....+++...
T Consensus 86 ~a~~~~~~~~~~l~~aa~ 103 (318)
T 2r6j_A 86 ALAFPQILDQFKILEAIK 103 (318)
T ss_dssp CCCGGGSTTHHHHHHHHH
T ss_pred CCchhhhHHHHHHHHHHH
Confidence 98542 3445555443
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0027 Score=54.39 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=48.0
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCC---CcEEEEeCCCH--HHHH----HHHHc------CceeecCchhhhccCC
Q 024121 10 SFILGFIG-AGKMAESIAKGVAKSGVLPP---DRICTAVHSNL--KRRD----AFESI------GVKVLSDNNAVVEYSD 73 (272)
Q Consensus 10 ~~~IgiIG-~G~mG~~la~~l~~~g~~~~---~~V~v~~~r~~--~~~~----~l~~~------g~~~~~~~~~~~~~aD 73 (272)
.+||.|+| +|.+|++++..|...|.... -.+.++ |+++ ++++ ++... ++.+..+..+.+++||
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~-Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daD 81 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLL-DITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEE-CCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEE-eCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCC
Confidence 47999999 79999999999998876321 128889 9864 2222 23221 1234455567789999
Q ss_pred EEEEee
Q 024121 74 VVVFSV 79 (272)
Q Consensus 74 ivil~v 79 (272)
+||++-
T Consensus 82 vVvitA 87 (333)
T 5mdh_A 82 VAILVG 87 (333)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 999985
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0013 Score=58.79 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=53.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH----HHHHHHHHcCceeec--Cchhhhcc-CCEEEEe--e
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL----KRRDAFESIGVKVLS--DNNAVVEY-SDVVVFS--V 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~----~~~~~l~~~g~~~~~--~~~~~~~~-aDivil~--v 79 (272)
..+||.|||.|..|.+.|+.|.+.|+ +|+++ |+++ ...+.|.+.|+.+.. +..+...+ +|+||++ +
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~----~V~~~-D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi 82 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGA----IVTVN-DGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGI 82 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTC----EEEEE-ESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTS
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCC----EEEEE-eCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcC
Confidence 46799999999999999999999999 99999 8753 234567778887642 23445566 8999987 3
Q ss_pred Ccc
Q 024121 80 KPQ 82 (272)
Q Consensus 80 ~~~ 82 (272)
|++
T Consensus 83 ~~~ 85 (451)
T 3lk7_A 83 PYN 85 (451)
T ss_dssp CTT
T ss_pred CCC
Confidence 544
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0012 Score=54.83 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=57.0
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
....+++.|||.|. .|.+++..|...|. .|+++ ++.. .+..+.+++||+||.+++...+
T Consensus 158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gA----tVtv~-hs~T--------------~~L~~~~~~ADIVI~Avg~p~~- 217 (286)
T 4a5o_A 158 DLYGMDAVVVGASNIVGRPMALELLLGGC----TVTVT-HRFT--------------RDLADHVSRADLVVVAAGKPGL- 217 (286)
T ss_dssp CCTTCEEEEECTTSTTHHHHHHHHHHTTC----EEEEE-CTTC--------------SCHHHHHHTCSEEEECCCCTTC-
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC----eEEEE-eCCC--------------cCHHHHhccCCEEEECCCCCCC-
Confidence 45678999999876 89999999999998 99999 7643 2456778999999999964321
Q ss_pred HHHHHhchhcCCCCEEEEE
Q 024121 86 DVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~ 104 (272)
+. ...++++.+||++
T Consensus 218 --I~--~~~vk~GavVIDv 232 (286)
T 4a5o_A 218 --VK--GEWIKEGAIVIDV 232 (286)
T ss_dssp --BC--GGGSCTTCEEEEC
T ss_pred --CC--HHHcCCCeEEEEe
Confidence 11 1346889999986
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0033 Score=57.68 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=30.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
..||.|||+|-+|+.++.+|...|. .+++++ |++.
T Consensus 326 ~arVLIVGaGGLGs~vA~~La~aGV---G~ItLv-D~D~ 360 (615)
T 4gsl_A 326 NTKVLLLGAGTLGCYVSRALIAWGV---RKITFV-DNGT 360 (615)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---CEEEEE-CCCB
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCC
Confidence 4689999999999999999999997 478888 7753
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0016 Score=58.00 Aligned_cols=92 Identities=11% Similarity=0.128 Sum_probs=58.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-----ecC-----chhhhccCCEEEEeeC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----LSD-----NNAVVEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----~~~-----~~~~~~~aDivil~v~ 80 (272)
+||.|||+|.||+.++..+.++.-+...+|++. +++....+.....|+.. ..+ ..+++++.|+||-+.+
T Consensus 14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~va-D~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvVIN~s~ 92 (480)
T 2ph5_A 14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTII-AAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFLIDVSI 92 (480)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEE-ESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEEEECCS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEe-ccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEEEECCc
Confidence 689999999999999999998753233478888 87655433222234332 122 2234555688888777
Q ss_pred cccHHHHHHHhchhcCCCCEEEEEcC
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+....++++... ..|..++|++.
T Consensus 93 ~~~~l~Im~acl---eaGv~YlDTa~ 115 (480)
T 2ph5_A 93 GISSLALIILCN---QKGALYINAAT 115 (480)
T ss_dssp SSCHHHHHHHHH---HHTCEEEESSC
T ss_pred cccCHHHHHHHH---HcCCCEEECCC
Confidence 776666665432 34667777653
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0017 Score=54.32 Aligned_cols=66 Identities=14% Similarity=0.279 Sum_probs=49.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHH--HHHHHcCceee-cC------chhhhccCCEEEEe
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRR--DAFESIGVKVL-SD------NNAVVEYSDVVVFS 78 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~--~~l~~~g~~~~-~~------~~~~~~~aDivil~ 78 (272)
.|+|.|.|+ |.+|+++++.|++.| + +|.+. +|++++. +.+...++.+. .| ..++++++|+||.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~----~V~~~-~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 79 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTF----KVRVV-TRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIV 79 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSS----EEEEE-ESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCc----eEEEE-EcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEe
Confidence 578999987 999999999999988 8 99999 8987653 34444565432 12 23457789999998
Q ss_pred eC
Q 024121 79 VK 80 (272)
Q Consensus 79 v~ 80 (272)
..
T Consensus 80 a~ 81 (299)
T 2wm3_A 80 TN 81 (299)
T ss_dssp CC
T ss_pred CC
Confidence 74
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0031 Score=54.07 Aligned_cols=91 Identities=12% Similarity=0.128 Sum_probs=55.9
Q ss_pred CeEEEEcccHHHHHHHHHHHh---C-CCCCCCcEEEEeCC-CHHHHHHHHH----c-----------------C--ceee
Q 024121 11 FILGFIGAGKMAESIAKGVAK---S-GVLPPDRICTAVHS-NLKRRDAFES----I-----------------G--VKVL 62 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~---~-g~~~~~~V~v~~~r-~~~~~~~l~~----~-----------------g--~~~~ 62 (272)
+||||+|.|.+|..+.+.|.+ + .+ +|...+++ +++....+.+ . | +.+.
T Consensus 3 ikVgI~G~G~iGr~l~r~l~~~~~~~~~----eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~ 78 (339)
T 2x5j_O 3 VRVAINGFGRIGRNVVRALYESGRRAEI----TVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVL 78 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTSGGGTE----EEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEE
T ss_pred eEEEEECcCHHHHHHHHHHHcCCCCCCE----EEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEE
Confidence 699999999999999999987 4 33 66544254 4555544442 1 1 1121
Q ss_pred --cCchhh-hc--cCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcC
Q 024121 63 --SDNNAV-VE--YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 63 --~~~~~~-~~--~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
.++.+. .. ++|+||.|++.....+........ ...++|||..+
T Consensus 79 ~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~-GakkVVId~~a 126 (339)
T 2x5j_O 79 HERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAA-GAKKVLFSHPG 126 (339)
T ss_dssp CCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHT-TCSEEEESSCC
T ss_pred ecCChHHCcccccCCCEEEECCCccccHHHHHHHHHc-CCCEEEEeccc
Confidence 233332 22 799999999987766666554332 12235776543
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00046 Score=59.78 Aligned_cols=88 Identities=11% Similarity=0.083 Sum_probs=49.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHHc--CceeecCchhhhcc--------------
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFESI--GVKVLSDNNAVVEY-------------- 71 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~-------------- 71 (272)
+++||||||+|.||+.++..+.+...-..-+|. ++ +++... +.+. |+..+.+..+++.+
T Consensus 3 k~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~-d~~~~~---~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~ 78 (358)
T 1ebf_A 3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLA-EAERSL---ISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAH 78 (358)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEE-CSSBEE---ECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHH
T ss_pred ceEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEE-ECChhh---hccccCCCCccccHHHHHhcccCCCCCHHHHHHH
Confidence 457999999999999999999886300001443 45 654321 1111 33322333333322
Q ss_pred ------CCEEEEeeCcccHHHHHHHhchhcCCCCEEEE
Q 024121 72 ------SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 72 ------aDivil~v~~~~~~~v~~~l~~~l~~~~~iis 103 (272)
.|+|+.|+|.......+ ...+..|+-|++
T Consensus 79 ~~~~~~~DvVV~~t~~~~~a~~~---~~AL~aGkhVVt 113 (358)
T 1ebf_A 79 LKTSPKPVILVDNTSSAYIAGFY---TKFVENGISIAT 113 (358)
T ss_dssp HTTCSSCEEEEECSCCHHHHTTH---HHHHHTTCEEEC
T ss_pred hhhccCCcEEEEcCCChHHHHHH---HHHHHCCCeEEe
Confidence 37899998765432222 233557777775
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0033 Score=53.37 Aligned_cols=66 Identities=18% Similarity=0.341 Sum_probs=47.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHH----HHH----c--CceeecC---chhhhccCCE
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDA----FES----I--GVKVLSD---NNAVVEYSDV 74 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~----l~~----~--g~~~~~~---~~~~~~~aDi 74 (272)
|||.|+|+ |.+|++++..|...|+. .++.++ |+ ++++++. +.. . .+.+..+ ..++++++|+
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~--~el~L~-Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~ 77 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFM--KDLVLI-GREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDV 77 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTC--CEEEEE-ECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCC--CEEEEE-cCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCE
Confidence 68999999 99999999999988752 368889 98 7654432 222 1 2233321 3677999999
Q ss_pred EEEee
Q 024121 75 VVFSV 79 (272)
Q Consensus 75 vil~v 79 (272)
||++-
T Consensus 78 Vi~~A 82 (313)
T 1hye_A 78 VIITS 82 (313)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99986
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0017 Score=55.95 Aligned_cols=101 Identities=15% Similarity=0.222 Sum_probs=64.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHH---cCceeec-CchhhhccCCEEEEeeCcc
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES---IGVKVLS-DNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~---~g~~~~~-~~~~~~~~aDivil~v~~~ 82 (272)
+.||+|||+ |..|.-|.+.|.++.. .++....+++.. +....-. ....+.. +.++...++|++|+|+|..
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~hP~---~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~ 89 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNHPE---AKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAG 89 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTT---EEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTT
T ss_pred eeEEEEECCCCHHHHHHHHHHHcCCC---cEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcH
Confidence 468999975 9999999999988643 366554233221 1221100 1222221 3344447899999999999
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcCCCC---HHHHHHHhC
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTG 118 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~~~~---~~~l~~~~~ 118 (272)
...++..++ .+..|||.++..- .+..+++.+
T Consensus 90 ~s~~~~~~~-----~g~~VIDlSsdfRl~~~~~y~~~y~ 123 (351)
T 1vkn_A 90 ASYDLVREL-----KGVKIIDLGADFRFDDPGVYREWYG 123 (351)
T ss_dssp HHHHHHTTC-----CSCEEEESSSTTTCSSHHHHHHHHC
T ss_pred HHHHHHHHh-----CCCEEEECChhhhCCchhhhhhhcC
Confidence 888777654 6788999877653 244455654
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0055 Score=52.35 Aligned_cols=92 Identities=14% Similarity=0.109 Sum_probs=58.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHHc--------C--------ce-------eec--C
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESI--------G--------VK-------VLS--D 64 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~~--------g--------~~-------~~~--~ 64 (272)
+||||+|.|.+|.-+.+.|.++.. -+|...+++ +++....+.+. + +. +.. +
T Consensus 2 ikVgI~G~G~iG~~l~R~l~~~~~---veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d 78 (330)
T 1gad_O 2 IKVGINGFGRIGRIVFRAAQKRSD---IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERD 78 (330)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSS---EEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred eEEEEECcCHHHHHHHHHHHcCCC---eEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCC
Confidence 589999999999999999887643 255544355 34544444441 1 10 121 2
Q ss_pred chhhh---ccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 65 NNAVV---EYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 65 ~~~~~---~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
+.++- .++|+||.|+|...-.+..+.. +..|..+|++++..
T Consensus 79 p~~i~w~~~~vDvVf~atg~~~s~e~a~~~---l~~GakvVdlSa~~ 122 (330)
T 1gad_O 79 PANLKWDEVGVDVVAEATGLFLTDETARKH---ITAGAKKVVMTGPS 122 (330)
T ss_dssp GGGGCHHHHTCSEEEECSSSCCSHHHHTHH---HHTTCSEEEESSCC
T ss_pred hhhCccccccCCEEEECCCccccHHHHHHH---HHCCCEEEEECCCC
Confidence 33321 4799999999988766666543 34566667776654
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0013 Score=57.06 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=55.5
Q ss_pred CCeEEEEc-ccHHHHHHHHH-HHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCceeec--CchhhhccCCEEEEeeCcccH
Q 024121 10 SFILGFIG-AGKMAESIAKG-VAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLS--DNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 10 ~~~IgiIG-~G~mG~~la~~-l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~~~--~~~~~~~~aDivil~v~~~~~ 84 (272)
|+||+|+| .|.+|..+.+. |.+.++ +...++....++..+ ...+....+.+.. +..+ .+++|+||.|+|....
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~-~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~~~DvVf~a~g~~~s 78 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDF-DAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LKALDIIVTCQGGDYT 78 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGG-GGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HHTCSEEEECSCHHHH
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCC-CeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hcCCCEEEECCCchhH
Confidence 36999999 89999999995 444443 112455441333211 1001111222222 2333 5789999999998877
Q ss_pred HHHHHHhchhcCCC--CEEEEEcCC
Q 024121 85 KDVAMQIRPLLSRK--KLLVSVAAG 107 (272)
Q Consensus 85 ~~v~~~l~~~l~~~--~~iis~~~~ 107 (272)
.+..+.+.. .| .+|||.++.
T Consensus 79 ~~~a~~~~~---~G~k~vVID~ss~ 100 (367)
T 1t4b_A 79 NEIYPKLRE---SGWQGYWIDAASS 100 (367)
T ss_dssp HHHHHHHHH---TTCCCEEEECSST
T ss_pred HHHHHHHHH---CCCCEEEEcCChh
Confidence 777766543 34 388987654
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0013 Score=56.00 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=48.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cC------chhhhccCCEEEEee
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD------NNAVVEYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~------~~~~~~~aDivil~v 79 (272)
++|+|.|.|. |.+|+.+++.|++.|+ +|++. +|++++.+.+...++... .| ..++++++|+||-+.
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a 85 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGH----DLVLI-HRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSA 85 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC-
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-ecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECC
Confidence 3479999985 9999999999999999 99999 898766554443354321 12 234567899999876
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0016 Score=59.97 Aligned_cols=96 Identities=11% Similarity=0.100 Sum_probs=63.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecC---c----hhhhccCCEEEEeeCccc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD---N----NAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~---~----~~~~~~aDivil~v~~~~ 83 (272)
++|.|+|+|.+|..+++.|.+.|+ +|.+. ++++++.+++. ..+..| . +.-++++|.++.+++++.
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~----~v~vi-d~d~~~~~~~~---~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~ 420 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPV----PFILI-DRQESPVCNDH---VVVYGDATVGQTLRQAGIDRASGIIVTTNDDS 420 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC----CEEEE-ESSCCSSCCSS---CEEESCSSSSTHHHHHTTTSCSEEEECCSCHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC----CEEEE-ECChHHHhhcC---CEEEeCCCCHHHHHhcCccccCEEEEECCCch
Confidence 789999999999999999999999 99999 99988765543 111111 1 122568999999998775
Q ss_pred HHHHHHHhchhcCCC-CEEEEEcCCCCHHHHH
Q 024121 84 VKDVAMQIRPLLSRK-KLLVSVAAGVKLKDLQ 114 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~-~~iis~~~~~~~~~l~ 114 (272)
..-.+..+...+.+. ++|.-..+....+.++
T Consensus 421 ~ni~~~~~ak~l~~~~~iiar~~~~~~~~~l~ 452 (565)
T 4gx0_A 421 TNIFLTLACRHLHSHIRIVARANGEENVDQLY 452 (565)
T ss_dssp HHHHHHHHHHHHCSSSEEEEEESSTTSHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 443333333445566 4444443333334443
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0041 Score=53.29 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=55.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH----c-----------------C--cee--ecC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES----I-----------------G--VKV--LSD 64 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~----~-----------------g--~~~--~~~ 64 (272)
+||||+|.|.+|+.+.+.|.+++. +.-+|...+++ +++....+.+ . | +.+ ..+
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~-~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 81 (339)
T 3b1j_A 3 IRVAINGFGRIGRNFLRCWFGRQN-TDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN 81 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSC-CSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred eEEEEECCCHHHHHHHHHHHhcCC-CCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecCC
Confidence 699999999999999999987630 11156544255 5555544433 1 1 111 123
Q ss_pred chhhh---ccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEc
Q 024121 65 NNAVV---EYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 65 ~~~~~---~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
+.++- .++|+||.|++.....+........ ...++|||..
T Consensus 82 p~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~-GakkVVId~~ 124 (339)
T 3b1j_A 82 PLNLPWKEWDIDLVIESTGVFVTAEGASKHIQA-GAKKVLITAP 124 (339)
T ss_dssp GGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHT-TCSEEEESSC
T ss_pred hHHCcccccCCCEEEECCCccccHHHHHHHHHc-CCcEEEEeCC
Confidence 34431 2789999999887666665544322 2233467653
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00065 Score=58.42 Aligned_cols=94 Identities=15% Similarity=0.233 Sum_probs=58.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
+||+||| +|..|.-|.+.|.++.| +..++.....++.. +.-.+......+.....+.+.++|+||.|+|.....+..
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~f-p~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~~a 80 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDF-PASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAGSAMSKVQA 80 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCCTTCSEEEECSCHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CceEEEEEECcccCCCceeecCCceEEEeCCHHHhccCCEEEECCChHHHHHHH
Confidence 6899999 69999999998888755 32245544133221 100011111222211123457899999999988877777
Q ss_pred HHhchhcCCCCEEEEEcCCC
Q 024121 89 MQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~ 108 (272)
+.+. ..|..|||.++..
T Consensus 81 ~~~~---~~G~~vID~Sa~~ 97 (344)
T 3tz6_A 81 PRFA---AAGVTVIDNSSAW 97 (344)
T ss_dssp HHHH---HTTCEEEECSSTT
T ss_pred HHHH---hCCCEEEECCCcc
Confidence 6654 4677899987653
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0022 Score=53.79 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=54.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------HHHHHH---HHcCceee-c------Cchhhhcc
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL-------KRRDAF---ESIGVKVL-S------DNNAVVEY 71 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------~~~~~l---~~~g~~~~-~------~~~~~~~~ 71 (272)
+|+|.|.|+ |.+|+++++.|++.|+ +|++. +|++ ++.+.+ ...++.+. . +..+++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~ 76 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGN----PTYAL-VRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQ 76 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTC----CEEEE-ECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCC----cEEEE-ECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhC
Confidence 478999986 9999999999999999 99999 8876 554433 23465432 1 22456778
Q ss_pred CCEEEEeeCcc---cHHHHHHHhc
Q 024121 72 SDVVVFSVKPQ---VVKDVAMQIR 92 (272)
Q Consensus 72 aDivil~v~~~---~~~~v~~~l~ 92 (272)
+|+||.+.... ....+++...
T Consensus 77 ~d~vi~~a~~~~~~~~~~l~~aa~ 100 (307)
T 2gas_A 77 VDIVICAAGRLLIEDQVKIIKAIK 100 (307)
T ss_dssp CSEEEECSSSSCGGGHHHHHHHHH
T ss_pred CCEEEECCcccccccHHHHHHHHH
Confidence 99999998543 3344554443
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0039 Score=52.29 Aligned_cols=36 Identities=14% Similarity=0.385 Sum_probs=31.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
...||.|||+|-+|+.++.+|..+|. .+++++ |.+.
T Consensus 35 ~~~~VlVvGaGGlGs~va~~La~aGV---G~i~lv-D~D~ 70 (292)
T 3h8v_A 35 RTFAVAIVGVGGVGSVTAEMLTRCGI---GKLLLF-DYDK 70 (292)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CCCB
T ss_pred hCCeEEEECcCHHHHHHHHHHHHcCC---CEEEEE-CCCc
Confidence 34689999999999999999999997 378888 8765
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0026 Score=54.27 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=47.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCC---CCCcEEEEeCCCH--HHHH----HHHHc------CceeecCchhhhccC
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVL---PPDRICTAVHSNL--KRRD----AFESI------GVKVLSDNNAVVEYS 72 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~---~~~~V~v~~~r~~--~~~~----~l~~~------g~~~~~~~~~~~~~a 72 (272)
+.|||.|+|. |.+|++++..|.+.|+. ...+|.++ |+++ ++.+ .+... .+....+..++++++
T Consensus 3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~-D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~ 81 (327)
T 1y7t_A 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLL-EIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDA 81 (327)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEE-CCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEE-eCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCC
Confidence 4579999996 99999999999998852 11278999 9874 2222 22211 122223456678899
Q ss_pred CEEEEee
Q 024121 73 DVVVFSV 79 (272)
Q Consensus 73 Divil~v 79 (272)
|+||.+-
T Consensus 82 D~Vih~A 88 (327)
T 1y7t_A 82 DYALLVG 88 (327)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9999874
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0028 Score=53.52 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=54.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH------HHHHHH---HHcCceee-c------Cchhhhcc
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL------KRRDAF---ESIGVKVL-S------DNNAVVEY 71 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~------~~~~~l---~~~g~~~~-~------~~~~~~~~ 71 (272)
++|+|.|.|. |.+|+++++.|++.|+ +|++. +|++ ++.+.+ ...++.+. . +..+++++
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~ 77 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSH----PTFIY-ARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQ 77 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTC----CEEEE-ECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCC----cEEEE-ECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcC
Confidence 4578999985 9999999999999999 99999 8875 343333 23455432 1 23456778
Q ss_pred CCEEEEeeCc---ccHHHHHHHhc
Q 024121 72 SDVVVFSVKP---QVVKDVAMQIR 92 (272)
Q Consensus 72 aDivil~v~~---~~~~~v~~~l~ 92 (272)
+|+||.+... .....+++...
T Consensus 78 ~d~vi~~a~~~~~~~~~~l~~aa~ 101 (321)
T 3c1o_A 78 VDIVISALPFPMISSQIHIINAIK 101 (321)
T ss_dssp CSEEEECCCGGGSGGGHHHHHHHH
T ss_pred CCEEEECCCccchhhHHHHHHHHH
Confidence 9999999753 23445555443
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0048 Score=53.54 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=49.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH----c-----------------C--cee--ecC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES----I-----------------G--VKV--LSD 64 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~----~-----------------g--~~~--~~~ 64 (272)
+||||+|+|.+|..+.+.|.+++. +.-+|...+++ +++....+.+ . | +.+ ..+
T Consensus 3 ikVgInGfGrIGr~vlR~l~~~~~-~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 81 (380)
T 2d2i_A 3 IRVAINGFGRIGRNFLRCWFGRQN-TDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN 81 (380)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSS-CSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred cEEEEECcCHHHHHHHHHHhcCCC-CCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecCC
Confidence 699999999999999999887630 11156544355 4555544443 1 1 111 123
Q ss_pred chhhh---ccCCEEEEeeCcccHHHHHHHh
Q 024121 65 NNAVV---EYSDVVVFSVKPQVVKDVAMQI 91 (272)
Q Consensus 65 ~~~~~---~~aDivil~v~~~~~~~v~~~l 91 (272)
+.++. .++|+||.|++.....+.....
T Consensus 82 p~~l~w~~~gvDvV~e~TG~f~s~e~a~~h 111 (380)
T 2d2i_A 82 PLNLPWKEWDIDLVIESTGVFVTAEGASKH 111 (380)
T ss_dssp GGGCCHHHHTCCEEEECSSSCCBHHHHHHH
T ss_pred hHHCCcccCCCCEEEECCCccccHHHHHHH
Confidence 33431 2789999999877665555443
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0078 Score=55.18 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=29.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
..||.|||+|.+|+.++.+|...|. .+++++ |.+
T Consensus 327 ~~kVLIVGaGGLGs~va~~La~aGV---G~ItLv-D~D 360 (598)
T 3vh1_A 327 NTKVLLLGAGTLGCYVSRALIAWGV---RKITFV-DNG 360 (598)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTC---CEEEEE-CCS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCC
Confidence 4689999999999999999999997 378888 654
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0064 Score=51.98 Aligned_cols=90 Identities=14% Similarity=0.153 Sum_probs=56.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH----cC-------------------ceee--c
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES----IG-------------------VKVL--S 63 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~----~g-------------------~~~~--~ 63 (272)
++||||+|.|.+|.-+.+.|.++.. -+|...+++ +++....+.+ .| +.+. .
T Consensus 1 mikVgI~G~G~iGr~l~R~l~~~~~---veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~ 77 (334)
T 3cmc_O 1 AVKVGINGFGRIGRNVFRAALKNPD---IEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAER 77 (334)
T ss_dssp CEEEEEESCSHHHHHHHHHHTTCTT---EEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCS
T ss_pred CeEEEEECCCHHHHHHHHHHhCCCC---eEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecC
Confidence 3689999999999999998887632 155544365 4445444442 11 1122 1
Q ss_pred Cchhh-hc--cCCEEEEeeCcccHHHHHHHhchhcCCCC--EEEEEc
Q 024121 64 DNNAV-VE--YSDVVVFSVKPQVVKDVAMQIRPLLSRKK--LLVSVA 105 (272)
Q Consensus 64 ~~~~~-~~--~aDivil~v~~~~~~~v~~~l~~~l~~~~--~iis~~ 105 (272)
++.+. .. ++|+||.|+|...-.+...... ..|. +|||..
T Consensus 78 dp~~i~w~~~~vDvV~~atg~~~s~e~a~~~l---~~Gak~vVId~p 121 (334)
T 3cmc_O 78 DPENLAWGEIGVDIVVESTGRFTKREDAAKHL---EAGAKKVIISAP 121 (334)
T ss_dssp SGGGCCTGGGTCCEEEECSSSCCBHHHHTHHH---HTTCSEEEESSC
T ss_pred ChhhcCcccCccCEEEECCCchhhHHHHHHHH---HCCCCEEEEeCC
Confidence 33332 12 7999999999887666665543 3344 788754
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0018 Score=54.60 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=45.3
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee------ecCchhhhccCCEEEEee
Q 024121 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV------LSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 10 ~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~------~~~~~~~~~~aDivil~v 79 (272)
+|+|.|.| +|.+|+.++..|++.|+ +|++. +|++.... +. ++.. ..+..++++++|+||-+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~-~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a 70 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGN----TPIIL-TRSIGNKA-IN--DYEYRVSDYTLEDLINQLNDVDAVVHLA 70 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCCC--------CCEEEECCCCHHHHHHHTTTCSEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC----EEEEE-eCCCCccc-CC--ceEEEEccccHHHHHHhhcCCCEEEEcc
Confidence 47899998 59999999999999999 99999 88854443 33 3321 233455677999999886
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.014 Score=52.34 Aligned_cols=88 Identities=17% Similarity=0.246 Sum_probs=62.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--cCcee-ecCc-------hhhhccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKV-LSDN-------NAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--~g~~~-~~~~-------~~~~~~aDivil~ 78 (272)
..++|-|+|.|++|..+|+.|.+ ++ +|.+. .+++++++.+.+ .+..+ ..|. ++-+.++|+++.+
T Consensus 234 ~~~~v~I~GgG~ig~~lA~~L~~-~~----~v~iI-E~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~ 307 (461)
T 4g65_A 234 PYRRIMIVGGGNIGASLAKRLEQ-TY----SVKLI-ERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIAL 307 (461)
T ss_dssp CCCEEEEECCSHHHHHHHHHHTT-TS----EEEEE-ESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEEC
T ss_pred cccEEEEEcchHHHHHHHHHhhh-cC----ceEEE-ecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEc
Confidence 34789999999999999998754 57 99999 999999999887 34333 2221 2336789999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEE
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
+.++...=+...+...+...+++.
T Consensus 308 T~~De~Ni~~~llAk~~gv~kvIa 331 (461)
T 4g65_A 308 TNEDETNIMSAMLAKRMGAKKVMV 331 (461)
T ss_dssp CSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred ccCcHHHHHHHHHHHHcCCccccc
Confidence 887765544444444454544443
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0038 Score=53.59 Aligned_cols=76 Identities=12% Similarity=0.198 Sum_probs=53.0
Q ss_pred CCCCCCCCCCCeEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH----cCceee-cC------chh
Q 024121 1 MDAFPIPAESFILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES----IGVKVL-SD------NNA 67 (272)
Q Consensus 1 ~~~~~~~~~~~~IgiIG-~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~----~g~~~~-~~------~~~ 67 (272)
|+....+++.|+|.|.| +|.+|+.+++.|++. |+ .+|+++ +|++.+...+.+ .++... .| ..+
T Consensus 12 ~~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~---~~V~~~-~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 87 (344)
T 2gn4_A 12 MPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNA---KKIIVY-SRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNY 87 (344)
T ss_dssp ----CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCC---SEEEEE-ESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHH
T ss_pred CccHHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCC---CEEEEE-ECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHH
Confidence 45566677788999998 599999999999998 84 289999 999887765543 233321 12 234
Q ss_pred hhccCCEEEEeeC
Q 024121 68 VVEYSDVVVFSVK 80 (272)
Q Consensus 68 ~~~~aDivil~v~ 80 (272)
++++.|+||-+..
T Consensus 88 ~~~~~D~Vih~Aa 100 (344)
T 2gn4_A 88 ALEGVDICIHAAA 100 (344)
T ss_dssp HTTTCSEEEECCC
T ss_pred HHhcCCEEEECCC
Confidence 5678999998863
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0055 Score=54.82 Aligned_cols=90 Identities=20% Similarity=0.229 Sum_probs=68.5
Q ss_pred CCCCeEEEEccc----HHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc
Q 024121 8 AESFILGFIGAG----KMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 8 ~~~~~IgiIG~G----~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
.+.++|++||++ ++|..+.++|.+.| + .|+.. |...... .|+.+..+..++.+..|++++++|++
T Consensus 6 ~~p~siAVvGas~~~~~~g~~v~~~l~~~g~~----~v~pV-nP~~~~i-----~G~~~y~sl~~lp~~~Dlavi~vp~~ 75 (457)
T 2csu_A 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKG----KVYPV-NIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPKR 75 (457)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSS----EEEEE-CSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCHH
T ss_pred cCCCeEEEECcCCCCCchHHHHHHHHHHcCCC----EEEEE-CCCCCeE-----CCEeccCCHHHcCCCCCEEEEecCHH
Confidence 455789999997 89999999999885 5 88877 6652211 58888888888877899999999999
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
.+.+++++.... .. +.++-.+.|++
T Consensus 76 ~~~~~v~e~~~~-Gi-~~vv~~s~G~~ 100 (457)
T 2csu_A 76 FVKDTLIQCGEK-GV-KGVVIITAGFG 100 (457)
T ss_dssp HHHHHHHHHHHH-TC-CEEEECCCSST
T ss_pred HHHHHHHHHHHc-CC-CEEEEecCCCC
Confidence 999998876543 22 34454566764
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0086 Score=51.17 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=56.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH----cC-------------------ceee--cC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES----IG-------------------VKVL--SD 64 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~----~g-------------------~~~~--~~ 64 (272)
+||||+|.|.+|.-+.+.|.+++. +.-+|...+++ +++....+.+ .| +.+. .+
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~-p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d 79 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKN-PDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD 79 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC-TTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred CEEEEEccCHHHHHHHHHHHhCCC-CCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCC
Confidence 489999999999999999887620 11276655355 4455444442 11 1122 13
Q ss_pred chhh-hc--cCCEEEEeeCcccHHHHHHHhchhcCCCC--EEEEEc
Q 024121 65 NNAV-VE--YSDVVVFSVKPQVVKDVAMQIRPLLSRKK--LLVSVA 105 (272)
Q Consensus 65 ~~~~-~~--~aDivil~v~~~~~~~v~~~l~~~l~~~~--~iis~~ 105 (272)
+.++ .. ++|+||.|+|...-.+..+... ..|. +|||..
T Consensus 80 p~~l~w~~~~vDvV~~atg~~~s~e~a~~~l---~aGakkvVId~~ 122 (332)
T 1hdg_O 80 PSKLPWKDLGVDFVIESTGVFRNREKAELHL---QAGAKKVIITAP 122 (332)
T ss_dssp GGGSCHHHHTCCEEEECSSSCCBHHHHTHHH---HTTCSEEEESSC
T ss_pred hHHCcccccCCCEEEECCccchhHHHHHHHH---HcCCcEEEEeCC
Confidence 3333 22 7999999999887666665543 3344 888754
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0041 Score=52.04 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=38.2
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
+..+++.|+| +|-+|.+++..|.+.|+ +|+++ +|++++.+++.+
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~----~V~i~-~R~~~~~~~l~~ 161 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGA----EVVLC-GRKLDKAQAAAD 161 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC----EEEEE-ECCHHHHHHHHH
Confidence 3567899999 89999999999999998 89999 999888776653
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0058 Score=55.28 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=52.4
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcCceeec-CchhhhccCCEEEEe--eCcc
Q 024121 9 ESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLS-DNNAVVEYSDVVVFS--VKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~~-~~~~~~~~aDivil~--v~~~ 82 (272)
+.++|.|||.|..|.+ +|+.|.+.|+ +|+++ |... ...+.|.+.|+.+.. ...+.+.++|+||+. +|++
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~ 94 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGY----QISGS-DLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISAD 94 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTC----EEEEE-CSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTT
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCC----eEEEE-ECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCC
Confidence 4578999999999986 9999999999 99999 8754 345667778887642 223446789999987 4554
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0038 Score=50.47 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=48.7
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHHcCcee-e------cCchhhhccCCEEEE
Q 024121 8 AESFILGFIG-AGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIGVKV-L------SDNNAVVEYSDVVVF 77 (272)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~------~~~~~~~~~aDivil 77 (272)
+++|+|.|.| +|.+|+.+++.|++. |+ +|++. +|++++.+.+ ..++.. . .+..+++++.|+||-
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~----~V~~~-~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~ 75 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKF----VAKGL-VRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVI 75 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTC----EEEEE-ESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCc----EEEEE-EcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEE
Confidence 3568899998 599999999999999 78 99999 9998776554 222221 1 123355678999998
Q ss_pred ee
Q 024121 78 SV 79 (272)
Q Consensus 78 ~v 79 (272)
+.
T Consensus 76 ~a 77 (253)
T 1xq6_A 76 LT 77 (253)
T ss_dssp CC
T ss_pred ec
Confidence 75
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0028 Score=52.53 Aligned_cols=65 Identities=18% Similarity=0.306 Sum_probs=50.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHHcCceee-cC------chhhhccCCEEEEeeC
Q 024121 11 FILGFIGA-GKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD------NNAVVEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~------~~~~~~~aDivil~v~ 80 (272)
|+|.|.|. |.+|+.+++.|.+. |+ +|++. +|++++.+.+...++... .| ..++++++|+||-+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~----~V~~~-~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPAS----QIIAI-VRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGG----GEEEE-ESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCC----eEEEE-EcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 57889986 99999999999998 98 99999 998877766655555432 12 2345678999998864
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.018 Score=49.66 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=30.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
..+|.|||+|.+|+.++.+|..+|. .+++++ |++
T Consensus 118 ~~~VlvvG~GglGs~va~~La~aGv---g~i~lv-D~D 151 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATSGI---GEIILI-DND 151 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-ECC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---CeEEEE-CCC
Confidence 4689999999999999999999997 378888 765
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0086 Score=49.48 Aligned_cols=64 Identities=16% Similarity=0.330 Sum_probs=48.5
Q ss_pred eEEEEcc-cHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHHcCceee-cC------chhhhccCCEEEEeeC
Q 024121 12 ILGFIGA-GKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD------NNAVVEYSDVVVFSVK 80 (272)
Q Consensus 12 ~IgiIG~-G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~------~~~~~~~aDivil~v~ 80 (272)
||.|.|. |.+|+.+++.|.+. |+ +|++. +|++++.+.+...++... .| ..++++++|+||-+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPAS----QIVAI-VRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGG----GEEEE-ESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCc----eEEEE-EcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 4788886 99999999999998 88 99999 998877766655555432 12 2345678999998763
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.016 Score=47.64 Aligned_cols=88 Identities=15% Similarity=0.179 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cc
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQ 82 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~ 82 (272)
|++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ..+......+.++... ++
T Consensus 4 m~~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~D~~~~~ 71 (267)
T 2gdz_A 4 MVNGKVALVTGAAQGIGRAFAEALLLKGA----KVALV-DWNLEAGVQCKAA-------LHEQFEPQKTLFIQCDVADQQ 71 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HTTTSCGGGEEEEECCTTSHH
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHhhcCCCceEEEecCCCCHH
Confidence 445567777765 9999999999999999 99999 9998776544320 0000011223333332 34
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcC
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
.+.++++++...+.+=.++|+..+
T Consensus 72 ~v~~~~~~~~~~~g~id~lv~~Ag 95 (267)
T 2gdz_A 72 QLRDTFRKVVDHFGRLDILVNNAG 95 (267)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 566666666544444457787644
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0016 Score=55.86 Aligned_cols=91 Identities=13% Similarity=0.150 Sum_probs=55.9
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH--HcCceeec-CchhhhccCCEEEEeeCcccHHH
Q 024121 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE--SIGVKVLS-DNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~--~~g~~~~~-~~~~~~~~aDivil~v~~~~~~~ 86 (272)
|||+|+| .|.+|..+.+.|.+.+| +...+....++..+. +.+. ...+.+.. ++.+ . ++|+||.|++.....+
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~-~~~~l~~~~s~~~~g-~~l~~~g~~i~v~~~~~~~-~-~~DvV~~a~g~~~s~~ 76 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNF-PLSELRLYASPRSAG-VRLAFRGEEIPVEPLPEGP-L-PVDLVLASAGGGISRA 76 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC-CCSCCEEEECGGGSS-CEEEETTEEEEEEECCSSC-C-CCSEEEECSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEeeccccCC-CEEEEcCceEEEEeCChhh-c-CCCEEEECCCccchHH
Confidence 6899999 89999999999987666 333444331221100 0000 01122221 2333 4 8999999998877776
Q ss_pred HHHHhchhcCCCCEEEEEcCCC
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~ 108 (272)
....+. ..|..+|+.++..
T Consensus 77 ~a~~~~---~~G~~vId~s~~~ 95 (331)
T 2yv3_A 77 KALVWA---EGGALVVDNSSAW 95 (331)
T ss_dssp HHHHHH---HTTCEEEECSSSS
T ss_pred HHHHHH---HCCCEEEECCCcc
Confidence 666543 4677899886653
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0018 Score=56.01 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=49.5
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-cCceee-c----C---chhhhccCCEEE
Q 024121 8 AESFILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGVKVL-S----D---NNAVVEYSDVVV 76 (272)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~-~----~---~~~~~~~aDivi 76 (272)
|++|+|.|.| +|-+|+.++..|++. |+ +|++. +|++++...+.. .++... . + ..++++++|+||
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~----~V~~~-~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vi 96 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTDW----EVFGM-DMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVIL 96 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSSC----EEEEE-ESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCC----EEEEE-eCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEE
Confidence 4568999998 599999999999998 89 99999 998876655544 344321 1 2 234566899999
Q ss_pred Eee
Q 024121 77 FSV 79 (272)
Q Consensus 77 l~v 79 (272)
-+.
T Consensus 97 h~A 99 (372)
T 3slg_A 97 PLV 99 (372)
T ss_dssp ECB
T ss_pred EcC
Confidence 764
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0092 Score=54.36 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=51.8
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCH--HHHHHHHHcCceee--cCchhhhccCCEEEEe--eCc
Q 024121 9 ESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNL--KRRDAFESIGVKVL--SDNNAVVEYSDVVVFS--VKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~--~~~~~l~~~g~~~~--~~~~~~~~~aDivil~--v~~ 81 (272)
+.++|.|||.|-.|.+ +|+.|.+.|+ +|+++ |.+. ...+.|.+.|+.+. .+.+.+..++|+||+. +|+
T Consensus 18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~----~V~~s-D~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~ 92 (524)
T 3hn7_A 18 QGMHIHILGICGTFMGSLALLARALGH----TVTGS-DANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKR 92 (524)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCT
T ss_pred cCCEEEEEEecHhhHHHHHHHHHhCCC----EEEEE-CCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCC
Confidence 3578999999999986 7888899999 99999 8753 34567777888764 2334444679999986 455
Q ss_pred c
Q 024121 82 Q 82 (272)
Q Consensus 82 ~ 82 (272)
+
T Consensus 93 ~ 93 (524)
T 3hn7_A 93 G 93 (524)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.022 Score=49.03 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=57.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHH----HHHH--cCceee--
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKVL-- 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~----~l~~--~g~~~~-- 62 (272)
..+|.|||+|.+|+.++.+|...|. .+++++ |.+. .|++ .+.+ .++.+.
T Consensus 36 ~~~VlivG~GGlG~~ia~~La~~Gv---g~itlv-D~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 111 (346)
T 1y8q_A 36 ASRVLLVGLKGLGAEIAKNLILAGV---KGLTML-DHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVD 111 (346)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEE-ECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEE
Confidence 4689999999999999999999997 378887 5431 1333 2333 233321
Q ss_pred -----cCchhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 63 -----SDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 63 -----~~~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
....+.+.++|+||.|+.....+..+...... .+..+|+.
T Consensus 112 ~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~--~~ip~i~~ 156 (346)
T 1y8q_A 112 TEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHK--NSIKFFTG 156 (346)
T ss_dssp CSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHHHH--TTCEEEEE
T ss_pred ecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEE
Confidence 12356678899999998665555555544322 34455543
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.03 Score=51.38 Aligned_cols=69 Identities=10% Similarity=0.096 Sum_probs=54.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-Cceee-cCc--hh-----hhccCCEEEEeeC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-GVKVL-SDN--NA-----VVEYSDVVVFSVK 80 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-g~~~~-~~~--~~-----~~~~aDivil~v~ 80 (272)
.++|.|+|+|.+|..+++.|.+.|+ +|.+. +.++++.+.+.+. |+.+. .|. .+ -++++|.+++ ++
T Consensus 127 ~~hviI~G~g~~g~~la~~L~~~~~----~vvvi-d~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~ 200 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLIRKLESRNH----LFVVV-TDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-NL 200 (565)
T ss_dssp CSCEEEESCCHHHHHHHHHTTTTTC----CEEEE-ESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-CS
T ss_pred CCeEEEECCChHHHHHHHHHHHCCC----CEEEE-ECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-eC
Confidence 4679999999999999999999999 99999 9999999888886 76542 221 12 2568999987 55
Q ss_pred cccH
Q 024121 81 PQVV 84 (272)
Q Consensus 81 ~~~~ 84 (272)
++..
T Consensus 201 ~D~~ 204 (565)
T 4gx0_A 201 SDPD 204 (565)
T ss_dssp CHHH
T ss_pred CcHH
Confidence 5443
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.024 Score=48.42 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=56.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH----c-----------C---------ceee--c
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES----I-----------G---------VKVL--S 63 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~----~-----------g---------~~~~--~ 63 (272)
+||||+|.|.+|..+.+.|.++++ +..+|...++. +++....+.+ . + +.+. .
T Consensus 2 ikVgInG~G~IGr~llR~l~~~~~-p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~~ 80 (337)
T 1rm4_O 2 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR 80 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSS-CSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred eEEEEECCCHHHHHHHHHHHhCCC-CCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEecC
Confidence 589999999999999999988732 22255544233 3333333332 1 1 0111 2
Q ss_pred Cchhh-hc--cCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 64 DNNAV-VE--YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 64 ~~~~~-~~--~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
++.++ .. ++|+||.|++...-.+..+.. +..|..+|+.++..
T Consensus 81 dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~---l~~Gak~V~iSap~ 125 (337)
T 1rm4_O 81 NPVNLPWGDMGIDLVIEGTGVFVDRDGAGKH---LQAGAKKVLITAPG 125 (337)
T ss_dssp CGGGSCHHHHTCCEEEECSSSCCBHHHHHHH---HHTTCSEEEESSCC
T ss_pred ChhhCcccccCCCEEEECCCchhhHHHHHHH---HHcCCEEEEECCcc
Confidence 33332 23 799999999987766666544 34556666665543
|
| >3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.024 Score=49.32 Aligned_cols=94 Identities=21% Similarity=0.252 Sum_probs=63.5
Q ss_pred CeEEEEcccHHHHHHHH-HHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC------------------ceeecC----chh
Q 024121 11 FILGFIGAGKMAESIAK-GVAKSGVLPPDRICTAVHSNLKRRDAFESIG------------------VKVLSD----NNA 67 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~-~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g------------------~~~~~~----~~~ 67 (272)
||+-.+|+|++|..+.. -|.++|+ +|++. +++....+.+.+.| ++...+ ..+
T Consensus 1 mkavhfGaGniGRGfig~~l~~~g~----~v~f~-dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v~~v~ai~s~~~~~~~ 75 (382)
T 3h2z_A 1 MKALHFGAGNIGRGFIGKLLADAGI----QLTFA-DVNQVVLDALNARHSYQVHVVGETEQVDTVSGVNAVSSIGDDVVD 75 (382)
T ss_dssp CEEEEECCSHHHHHTHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHSEEEEEEESSSEEEEEEESCEEEETTSSHHHH
T ss_pred CcEEEECCCccchhhHHHHHHHcCC----eEEEE-eCCHHHHHHHhcCCCEEEEEccCCcceEEEEEEEEEeCcHHHHHH
Confidence 78889999999976655 5567899 99999 99998888887632 111111 123
Q ss_pred hhccCCEEEEeeCcccHHHHHHHhchhc--------CCCCEEEEEcCCCC
Q 024121 68 VVEYSDVVVFSVKPQVVKDVAMQIRPLL--------SRKKLLVSVAAGVK 109 (272)
Q Consensus 68 ~~~~aDivil~v~~~~~~~v~~~l~~~l--------~~~~~iis~~~~~~ 109 (272)
.+.++|+|.+++.++..+.+...|...| .+.-+|++|-+-..
T Consensus 76 ~i~~adlitT~vG~~~l~~i~~~l~~~L~~R~~~~~~~pltilsCeN~~~ 125 (382)
T 3h2z_A 76 LIAQVDLVTTAVGPVVLERIAPAIAKGLVKRKEQGNESPLNIIACENMVR 125 (382)
T ss_dssp HHTTCSEEEECCCHHHHHHTHHHHHHHHHHHHHHTCCSCEEEEECCSSTT
T ss_pred HHcCCCEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCcEEEECCCccc
Confidence 5668999999998877665554333221 13445778766543
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0055 Score=53.10 Aligned_cols=93 Identities=12% Similarity=0.086 Sum_probs=56.1
Q ss_pred CeEEEEcc-cHHHHHHHH-HHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCceeecC-chhhhccCCEEEEeeCcccHHH
Q 024121 11 FILGFIGA-GKMAESIAK-GVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSD-NNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~-~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~~~~-~~~~~~~aDivil~v~~~~~~~ 86 (272)
|||||||+ |..|.-|.+ -|.++.+ +..++.....++..+ ...+......+... ..+...++|+||.|+|.....+
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~-~~~~l~~~ss~~aG~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~ 79 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDF-DLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEK 79 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGG-GGSEEEEEESSSTTSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCC-CceEEEEEeccccCcCHHHhCCCceEEEecCChhHhccCCEEEECCChHHHHH
Confidence 68999997 999999999 6666543 122554432544211 11121111222211 1234679999999999888777
Q ss_pred HHHHhchhcCCC--CEEEEEcCC
Q 024121 87 VAMQIRPLLSRK--KLLVSVAAG 107 (272)
Q Consensus 87 v~~~l~~~l~~~--~~iis~~~~ 107 (272)
....+.. .| +.|||.++.
T Consensus 80 ~~~~~~~---~G~k~~VID~ss~ 99 (370)
T 3pzr_A 80 VYPALRQ---AGWKGYWIDAAST 99 (370)
T ss_dssp HHHHHHH---TTCCCEEEECSST
T ss_pred HHHHHHH---CCCCEEEEeCCch
Confidence 7766543 34 488988654
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.032 Score=45.05 Aligned_cols=86 Identities=12% Similarity=0.149 Sum_probs=53.8
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-----c
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-----P 81 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-----~ 81 (272)
++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+++.+. ..+ .......++.+. .
T Consensus 12 l~~k~vlITGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~-~~~~~~~~~~~d~d~~~~ 78 (247)
T 3i1j_A 12 LKGRVILVTGAARGIGAAAARAYAAHGA----SVVLL-GRTEASLAEVSDQ-------IKS-AGQPQPLIIALNLENATA 78 (247)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH-TTSCCCEEEECCTTTCCH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC----EEEEE-ecCHHHHHHHHHH-------HHh-cCCCCceEEEeccccCCH
Confidence 34456666665 9999999999999999 99999 9998877665431 000 011122222222 2
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEcC
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+.+.++++++...+.+=.++|+..+
T Consensus 79 ~~~~~~~~~~~~~~g~id~lv~nAg 103 (247)
T 3i1j_A 79 QQYRELAARVEHEFGRLDGLLHNAS 103 (247)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCc
Confidence 3466666666554444457787643
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.013 Score=50.10 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=48.1
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH----HHHHHHHH-------cCceee-cC------chhh
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL----KRRDAFES-------IGVKVL-SD------NNAV 68 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~----~~~~~l~~-------~g~~~~-~~------~~~~ 68 (272)
+++|+|.|.|. |-+|+.++..|++.|+ +|++. +|++ +....+.. .++... .| ..++
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 97 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQ----VVIGL-DNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQV 97 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH
Confidence 35689999985 9999999999999999 99999 8853 33333332 233321 12 2455
Q ss_pred hccCCEEEEeeC
Q 024121 69 VEYSDVVVFSVK 80 (272)
Q Consensus 69 ~~~aDivil~v~ 80 (272)
++++|+||-+..
T Consensus 98 ~~~~d~Vih~A~ 109 (351)
T 3ruf_A 98 MKGVDHVLHQAA 109 (351)
T ss_dssp TTTCSEEEECCC
T ss_pred hcCCCEEEECCc
Confidence 678999998863
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.015 Score=49.94 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=64.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ecCchhhhccCCEEEEeeCcc-cHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSDNNAVVEYSDVVVFSVKPQ-VVKD 86 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~~~~~~~~~aDivil~v~~~-~~~~ 86 (272)
...+|.|+|+|.+|...++.+...|. +|++. ++++++.+.+++.|+.. ..+.+++.+..|+||-|+... .+..
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~~~~ 250 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAMGA----EVSVF-ARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKD 250 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTC----EEEEE-CSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCCHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHHHHH
Confidence 45689999999999999888888898 99999 99999998888888642 234344334789999999765 6665
Q ss_pred HHHHhchhcCCCCEEEEE
Q 024121 87 VAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~ 104 (272)
.++- ++++..++.+
T Consensus 251 ~~~~----l~~~G~iv~~ 264 (348)
T 3two_A 251 YLKL----LTYNGDLALV 264 (348)
T ss_dssp HHTT----EEEEEEEEEC
T ss_pred HHHH----HhcCCEEEEE
Confidence 5543 4455566654
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.016 Score=52.07 Aligned_cols=65 Identities=25% Similarity=0.276 Sum_probs=49.4
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcCceeec-CchhhhccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLS-DNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~~-~~~~~~~~aDivil~ 78 (272)
..++|.|||.|..|.+ +|+.|.+.|+ +|.++ |... ...+.+.+.|+.+.. ...+.++.+|+|++.
T Consensus 17 ~~~~i~viG~G~sG~s~~A~~l~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~g~~~~~~~~a~~vv~s 84 (475)
T 1p3d_A 17 RVQQIHFIGIGGAGMSGIAEILLNEGY----QISGS-DIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVS 84 (475)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTC----EEEEE-ESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEEC
T ss_pred cCCEEEEEeecHHHHHHHHHHHHhCCC----EEEEE-CCCCCHHHHHHHhCCCEEECCCCHHHcCCCCEEEEC
Confidence 3578999999999997 9999999999 99999 7754 334566667877642 122345789998886
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.006 Score=50.64 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=31.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
+.++|.|||+|..|..-++.|++.|+ +|+++ +.+.
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga----~VtVi-ap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGC----KLTLV-SPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTC----EEEEE-EEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCC----EEEEE-cCCC
Confidence 46899999999999999999999999 99999 6643
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.02 Score=51.25 Aligned_cols=80 Identities=15% Similarity=0.251 Sum_probs=55.6
Q ss_pred CCCCCCCCC--CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHH-cCceeecC--chhhhccCCE
Q 024121 1 MDAFPIPAE--SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVKVLSD--NNAVVEYSDV 74 (272)
Q Consensus 1 ~~~~~~~~~--~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~-~g~~~~~~--~~~~~~~aDi 74 (272)
|.-+|-..+ .++|.|||.|..|..-++.|++.|. +|+++ +.+. +..+.+.+ .++..... ..+.+.++|+
T Consensus 1 m~~~P~~~~l~~~~vlVvGgG~va~~k~~~L~~~ga----~V~vi-~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~l 75 (457)
T 1pjq_A 1 MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLEAGA----RLTVN-ALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWL 75 (457)
T ss_dssp CCCEEEEECCBTCEEEEECCSHHHHHHHHHHHHTTB----EEEEE-ESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSE
T ss_pred CCceeeEEECCCCEEEEECCCHHHHHHHHHHHhCcC----EEEEE-cCCCCHHHHHHHhcCCEEEEECCCCccccCCccE
Confidence 445555544 5899999999999999999999999 99999 6643 33444543 34543211 2334678999
Q ss_pred EEEeeCcccHH
Q 024121 75 VVFSVKPQVVK 85 (272)
Q Consensus 75 vil~v~~~~~~ 85 (272)
||.++.+..+.
T Consensus 76 Vi~at~~~~~n 86 (457)
T 1pjq_A 76 AIAATDDDTVN 86 (457)
T ss_dssp EEECCSCHHHH
T ss_pred EEEcCCCHHHH
Confidence 99997655443
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.017 Score=52.08 Aligned_cols=65 Identities=22% Similarity=0.279 Sum_probs=49.6
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceeec-CchhhhccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLS-DNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~aDivil~ 78 (272)
+.++|.|||.|..|.+ +|+.|.+.|+ +|.++ |.... ..+.+.+.|+.+.. ...+.++.+|+||+.
T Consensus 18 ~~~~v~viGiG~sG~s~~A~~l~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~g~~~~~~~~a~~vv~s 85 (491)
T 2f00_A 18 RVRHIHFVGIGGAGMGGIAEVLANEGY----QISGS-DLAPNPVTQQLMNLGATIYFNHRPENVRDASVVVVS 85 (491)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHTTC----EEEEE-CSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEEC
T ss_pred cCCEEEEEEcCHHHHHHHHHHHHhCCC----eEEEE-CCCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEEC
Confidence 4578999999999997 9999999999 99999 87543 34566667887642 112345689999886
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0053 Score=53.31 Aligned_cols=66 Identities=20% Similarity=0.162 Sum_probs=47.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cC------chhhhccCCEEEEee
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD------NNAVVEYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~------~~~~~~~aDivil~v 79 (272)
++|+|.|.|. |.+|+.+++.|++.|+ +|++. +|++.+.......++... .| ..++++++|+||-+.
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A 101 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGH----YVIAS-DWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA 101 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCC----eEEEE-ECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECc
Confidence 4679999987 9999999999999999 99999 887654322222233321 12 235567899999886
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.008 Score=52.22 Aligned_cols=95 Identities=14% Similarity=0.132 Sum_probs=57.3
Q ss_pred CCCeEEEEcc-cHHHHHHHH-HHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCceeecC-chhhhccCCEEEEeeCcccH
Q 024121 9 ESFILGFIGA-GKMAESIAK-GVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSD-NNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~-~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~~~~-~~~~~~~aDivil~v~~~~~ 84 (272)
..+||||||+ |..|.-|.+ -|.++.+ +..++.....++..+ ...+......+... ..+...++|+||+|+|....
T Consensus 3 ~~~~VaIvGATG~vG~ellr~lL~~hp~-~~~~l~~~ss~~aG~~~~~~~~~~~~v~~~~~~~~~~~vDvvf~a~~~~~s 81 (377)
T 3uw3_A 3 GSMNVGLVGWRGMVGSVLMQRMQEEGDF-DLIEPVFFSTSNAGGKAPSFAKNETTLKDATSIDDLKKCDVIITCQGGDYT 81 (377)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTGG-GGSEEEEEESSCTTSBCCTTCCSCCBCEETTCHHHHHTCSEEEECSCHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCC-CceEEEEEechhcCCCHHHcCCCceEEEeCCChhHhcCCCEEEECCChHHH
Confidence 3579999997 999999999 5555543 122554442443211 11121111222211 12346789999999998887
Q ss_pred HHHHHHhchhcCCC--CEEEEEcCC
Q 024121 85 KDVAMQIRPLLSRK--KLLVSVAAG 107 (272)
Q Consensus 85 ~~v~~~l~~~l~~~--~~iis~~~~ 107 (272)
.+....+. ..| +.|||.++.
T Consensus 82 ~~~~~~~~---~~G~k~~VID~ss~ 103 (377)
T 3uw3_A 82 NDVFPKLR---AAGWNGYWIDAASS 103 (377)
T ss_dssp HHHHHHHH---HTTCCSEEEECSST
T ss_pred HHHHHHHH---HCCCCEEEEeCCcc
Confidence 77777654 344 489988654
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.027 Score=48.56 Aligned_cols=87 Identities=10% Similarity=0.002 Sum_probs=60.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cC----chhhh------ccCCEEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD----NNAVV------EYSDVVVF 77 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~----~~~~~------~~aDivil 77 (272)
...+|.|+|+|.+|...++.+...|. +|++. ++++++.+.+++.|+... +. ..+.+ ...|+||-
T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid 263 (363)
T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKATGA----EVIVT-SSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILE 263 (363)
T ss_dssp TTCEEEEESSBHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC----EEEEE-ecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEE
Confidence 45689999999999999988888898 99999 999999888877776422 11 11111 15788888
Q ss_pred eeCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 78 SVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 78 ~v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|+....+...++.+ +++..++.+
T Consensus 264 ~~g~~~~~~~~~~l----~~~G~iv~~ 286 (363)
T 3uog_A 264 IAGGAGLGQSLKAV----APDGRISVI 286 (363)
T ss_dssp ETTSSCHHHHHHHE----EEEEEEEEE
T ss_pred CCChHHHHHHHHHh----hcCCEEEEE
Confidence 87765555555443 344455544
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.017 Score=42.54 Aligned_cols=78 Identities=12% Similarity=0.152 Sum_probs=49.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcCceeec--Cchhhhc--cCCEEEEeeCccc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLS--DNNAVVE--YSDVVVFSVKPQV 83 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~--~~~~~~~--~aDivil~v~~~~ 83 (272)
+.+++.|+|+|..|..++..+.+. |+ ++..+.+.++++.... -.|+.+.. +..+.++ +.|.|++|+|...
T Consensus 3 ~~~~vlIiGaG~~g~~l~~~l~~~~g~----~vvg~~d~~~~~~g~~-i~g~pV~g~~~l~~~~~~~~id~viia~~~~~ 77 (141)
T 3nkl_A 3 AKKKVLIYGAGSAGLQLANMLRQGKEF----HPIAFIDDDRKKHKTT-MQGITIYRPKYLERLIKKHCISTVLLAVPSAS 77 (141)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHSSSE----EEEEEECSCGGGTTCE-ETTEEEECGGGHHHHHHHHTCCEEEECCTTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCc----EEEEEEECCcccCCCE-ecCeEEECHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 456899999999999999999875 67 7766547665432110 13555443 3333333 5789999987543
Q ss_pred ---HHHHHHHh
Q 024121 84 ---VKDVAMQI 91 (272)
Q Consensus 84 ---~~~v~~~l 91 (272)
..+++..+
T Consensus 78 ~~~~~~i~~~l 88 (141)
T 3nkl_A 78 QVQKKVIIESL 88 (141)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555444
|
| >3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.044 Score=47.04 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=53.6
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEEEE-eCCCHHHHHHHHH-cCceee-----cCc--------------
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTA-VHSNLKRRDAFES-IGVKVL-----SDN-------------- 65 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~-g~~~~~~V~v~-~~r~~~~~~~l~~-~g~~~~-----~~~-------------- 65 (272)
..+||+|+| +|.||..-..-+.++ .+ +|... +++|.+.+.+..+ .+.+.. .+.
T Consensus 2 ~~k~i~ILGsTGSIG~~tldVi~~~~~~----~vvaL~a~~n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l 77 (376)
T 3a06_A 2 EERTLVILGATGSIGTQTLDVLKKVKGI----RLIGISFHSNLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSI 77 (376)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHSCSE----EEEEEEESSCHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTHH
T ss_pred CcceEEEECCCCHHHHHHHHHHHhCCCe----EEEEEEccCCHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHHH
Confidence 347899999 699999988777775 34 66533 4889888776654 454332 121
Q ss_pred hhhh--ccCCEEEEeeCcc-cHHHHHHHhc
Q 024121 66 NAVV--EYSDVVVFSVKPQ-VVKDVAMQIR 92 (272)
Q Consensus 66 ~~~~--~~aDivil~v~~~-~~~~v~~~l~ 92 (272)
.+++ .++|+|+.+++.. .+...+..+.
T Consensus 78 ~el~~~~~~D~Vv~AivG~aGL~ptlaAi~ 107 (376)
T 3a06_A 78 EEMLEALKPDITMVAVSGFSGLRAVLASLE 107 (376)
T ss_dssp HHHHHHHCCSEEEECCCSTTHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEeeCHHHHHHHHHHHH
Confidence 2444 3699999999765 4666666553
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0045 Score=51.73 Aligned_cols=58 Identities=9% Similarity=0.013 Sum_probs=41.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v 79 (272)
|||.|.|+ |-+|+.+++.|.+.|| +|++. .|++++.+ +.......+.++++|.||=+.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~----~V~~l-~R~~~~~~------~~~~~~~~~~l~~~d~vihla 59 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGH----EVTLV-SRKPGPGR------ITWDELAASGLPSCDAAVNLA 59 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSCCTTE------EEHHHHHHHCCCSCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCCCcCe------eecchhhHhhccCCCEEEEec
Confidence 79999987 9999999999999999 99999 88764310 111011123466788887543
|
| >2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.029 Score=47.87 Aligned_cols=88 Identities=14% Similarity=0.147 Sum_probs=55.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH----cC-------------------ceee--cC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES----IG-------------------VKVL--SD 64 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~----~g-------------------~~~~--~~ 64 (272)
+||||+|.|.+|+.+.+.|.++.+ +|...++. +++....+.+ .| +.+. .+
T Consensus 1 ikVgInG~G~IGr~vlr~l~~~~~----evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 76 (331)
T 2g82_O 1 MKVGINGFGRIGRQVFRILHSRGV----EVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKD 76 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC----CEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC----EEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCC
Confidence 489999999999999999887766 77765354 4454444443 22 1121 13
Q ss_pred chhh-hc--cCCEEEEeeCcccHHHHHHHhchhcCCCC--EEEEEc
Q 024121 65 NNAV-VE--YSDVVVFSVKPQVVKDVAMQIRPLLSRKK--LLVSVA 105 (272)
Q Consensus 65 ~~~~-~~--~aDivil~v~~~~~~~v~~~l~~~l~~~~--~iis~~ 105 (272)
+.+. .. ++|+||.|++...-.+..+... ..|. +|||..
T Consensus 77 p~~l~w~~~gvDiV~estG~~~s~e~a~~~l---~aGakkvVIsap 119 (331)
T 2g82_O 77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHL---EGGAKKVIITAP 119 (331)
T ss_dssp GGGSCTTTTTEEEEEECSSSCCBHHHHTHHH---HTTCSEEEESSC
T ss_pred hhhCcccccCCCEEEECCCchhhHHHHHHHH---HCCCCEEEECCC
Confidence 3332 22 6899999998877666655433 3344 777653
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.077 Score=45.45 Aligned_cols=87 Identities=14% Similarity=0.173 Sum_probs=60.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ec-----Cch-hh---h-----ccCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LS-----DNN-AV---V-----EYSD 73 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~-----~~~-~~---~-----~~aD 73 (272)
...+|.|+|+|.+|...++.+...|. +|++. ++++++.+.+++.|+.. .+ +.. ++ . ...|
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D 242 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAYGA----FVVCT-ARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN 242 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC----EEEEE-cCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCC
Confidence 34689999999999999888888888 88888 99999988888777642 11 111 11 1 2589
Q ss_pred EEEEeeCcc-cHHHHHHHhchhcCCCCEEEEE
Q 024121 74 VVVFSVKPQ-VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 74 ivil~v~~~-~~~~v~~~l~~~l~~~~~iis~ 104 (272)
+||-++... .+...+. .++++..++.+
T Consensus 243 ~vid~~g~~~~~~~~~~----~l~~~G~iv~~ 270 (352)
T 1e3j_A 243 VTIDCSGNEKCITIGIN----ITRTGGTLMLV 270 (352)
T ss_dssp EEEECSCCHHHHHHHHH----HSCTTCEEEEC
T ss_pred EEEECCCCHHHHHHHHH----HHhcCCEEEEE
Confidence 999998654 3444443 34555666654
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.04 Score=45.10 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=56.1
Q ss_pred CCCeEEEEcc-c-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---ccc
Q 024121 9 ESFILGFIGA-G-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQV 83 (272)
Q Consensus 9 ~~~~IgiIG~-G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~ 83 (272)
+.+++-|.|. | -+|.++++.|.+.|+ +|.+. +|+.++.+++.+. ..+ ....++.++.+. ++.
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------l~~-~~~~~~~~~~~Dl~~~~~ 87 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGA----DVVIS-DYHERRLGETRDQ-------LAD-LGLGRVEAVVCDVTSTEA 87 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHT-TCSSCEEEEECCTTCHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCC----EEEEe-cCCHHHHHHHHHH-------HHh-cCCCceEEEEeCCCCHHH
Confidence 3457888898 8 499999999999999 99999 9998877655431 000 112345555443 345
Q ss_pred HHHHHHHhchhcCCCCEEEEEcC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
++++++++...+.+=.++|+..+
T Consensus 88 v~~~~~~~~~~~g~id~li~~Ag 110 (266)
T 3o38_A 88 VDALITQTVEKAGRLDVLVNNAG 110 (266)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHhCCCcEEEECCC
Confidence 66777766554444457777643
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.025 Score=45.91 Aligned_cols=87 Identities=21% Similarity=0.229 Sum_probs=55.8
Q ss_pred CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---
Q 024121 5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK--- 80 (272)
Q Consensus 5 ~~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~--- 80 (272)
|..++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ..+ ...++.++...
T Consensus 2 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------l~~--~~~~~~~~~~Dv~~ 67 (247)
T 2jah_A 2 PSALQGKVALITGASSGIGEATARALAAEGA----AVAIA-ARRVEKLRALGDE-------LTA--AGAKVHVLELDVAD 67 (247)
T ss_dssp -CTTTTCEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTC
T ss_pred CccCCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCcEEEEECCCCC
Confidence 34455677777765 9999999999999999 99999 9998876655431 000 12344444432
Q ss_pred cccHHHHHHHhchhcCCCCEEEEEc
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
++.++++++++...+.+=.++|+..
T Consensus 68 ~~~~~~~~~~~~~~~g~id~lv~nA 92 (247)
T 2jah_A 68 RQGVDAAVASTVEALGGLDILVNNA 92 (247)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3456666666655444445777654
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.043 Score=45.97 Aligned_cols=83 Identities=13% Similarity=0.040 Sum_probs=54.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~~ 85 (272)
.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ..+ ...++.++.+. ++.+.
T Consensus 31 gk~vlVTGas~gIG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------l~~--~~~~~~~~~~Dv~d~~~v~ 96 (301)
T 3tjr_A 31 GRAAVVTGGASGIGLATATEFARRGA----RLVLS-DVDQPALEQAVNG-------LRG--QGFDAHGVVCDVRHLDEMV 96 (301)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCceEEEEccCCCHHHHH
Confidence 456777765 8999999999999999 99999 9998887665431 000 12344444443 33566
Q ss_pred HHHHHhchhcCCCCEEEEEcC
Q 024121 86 DVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~ 106 (272)
++++++.....+=.++|+..+
T Consensus 97 ~~~~~~~~~~g~id~lvnnAg 117 (301)
T 3tjr_A 97 RLADEAFRLLGGVDVVFSNAG 117 (301)
T ss_dssp HHHHHHHHHHSSCSEEEECCC
T ss_pred HHHHHHHHhCCCCCEEEECCC
Confidence 666666554434457777643
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.051 Score=44.53 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=53.5
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccHH
Q 024121 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVVK 85 (272)
Q Consensus 10 ~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~~ 85 (272)
.+++-|.| .|-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ..+.....++.++... ++.++
T Consensus 13 ~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~v~ 80 (267)
T 1iy8_A 13 DRVVLITGGGSGLGRATAVRLAAEGA----KLSLV-DVSSEGLEASKAA-------VLETAPDAEVLTTVADVSDEAQVE 80 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHHHCTTCCEEEEECCTTSHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHhhcCCceEEEEEccCCCHHHHH
Confidence 45666665 59999999999999999 99999 9998776654321 0110112344444432 34566
Q ss_pred HHHHHhchhcCCCCEEEEEc
Q 024121 86 DVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~ 105 (272)
++++++...+.+=.++|+..
T Consensus 81 ~~~~~~~~~~g~id~lv~nA 100 (267)
T 1iy8_A 81 AYVTATTERFGRIDGFFNNA 100 (267)
T ss_dssp HHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 67766655444445777764
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.018 Score=44.99 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=39.1
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc
Q 024121 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV 59 (272)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~ 59 (272)
...++|.|+| +|.+|.++++.+...|. +|++. +|++++.+.+.+.|.
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~----~V~~~-~~~~~~~~~~~~~g~ 84 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKMIGA----RIYTT-AGSDAKREMLSRLGV 84 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTC----EEEEE-ESSHHHHHHHHTTCC
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHcCC
Confidence 3457899999 69999999999999998 99999 999888776665553
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.029 Score=47.89 Aligned_cols=87 Identities=9% Similarity=0.132 Sum_probs=59.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCc-----hhhh----ccCCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN-----NAVV----EYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~-----~~~~----~~aDivil~v 79 (272)
...+|.|+|+|.+|...++.+...|. +|++. ++++++.+.+++.|+...-+. .+.+ ...|+||-++
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~ 238 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKAMGL----NVVAV-DIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTA 238 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECC
Confidence 35689999999999999998888998 99999 999999888877776422111 1111 3578888887
Q ss_pred Cc-ccHHHHHHHhchhcCCCCEEEEE
Q 024121 80 KP-QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 80 ~~-~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+...++- ++++..++..
T Consensus 239 g~~~~~~~~~~~----l~~~G~~v~~ 260 (339)
T 1rjw_A 239 VSKPAFQSAYNS----IRRGGACVLV 260 (339)
T ss_dssp CCHHHHHHHHHH----EEEEEEEEEC
T ss_pred CCHHHHHHHHHH----hhcCCEEEEe
Confidence 64 344444433 3444455543
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.041 Score=44.24 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=53.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCC--CCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cc
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSG--VLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQ 82 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g--~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~ 82 (272)
+.++|-|.|. |-+|.++++.|++.| + +|++. +|++++.+.+.+. ...++.++... ++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~----~V~~~-~r~~~~~~~l~~~------------~~~~~~~~~~D~~~~~ 64 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR----HIIAT-ARDVEKATELKSI------------KDSRVHVLPLTVTCDK 64 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCC----EEEEE-ESSGGGCHHHHTC------------CCTTEEEEECCTTCHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCc----EEEEE-ecCHHHHHHHHhc------------cCCceEEEEeecCCHH
Confidence 4567777765 999999999999999 8 99999 9998876655432 12344444432 33
Q ss_pred cHHHHHHHhchhcC--CCCEEEEEcC
Q 024121 83 VVKDVAMQIRPLLS--RKKLLVSVAA 106 (272)
Q Consensus 83 ~~~~v~~~l~~~l~--~~~~iis~~~ 106 (272)
.++++++++...+. +=.++|++.+
T Consensus 65 ~~~~~~~~~~~~~g~~~id~li~~Ag 90 (250)
T 1yo6_A 65 SLDTFVSKVGEIVGSDGLSLLINNAG 90 (250)
T ss_dssp HHHHHHHHHHHHHGGGCCCEEEECCC
T ss_pred HHHHHHHHHHHhcCCCCCcEEEECCc
Confidence 56666666654443 3347777643
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.07 Score=44.71 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=59.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHH----cC---cee-ecCchhhh-ccCCEEEE
Q 024121 8 AESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFES----IG---VKV-LSDNNAVV-EYSDVVVF 77 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~----~g---~~~-~~~~~~~~-~~aDivil 77 (272)
....+|..||||..|.+... +.+ .|. +|+.+ |.+++.++..++ .| +++ ..+..+.- ...|+|++
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~-lA~~~ga----~V~gI-Dis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~ 194 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGIL-LSHVYGM----RVNVV-EIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMV 194 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHH-HHHTTCC----EEEEE-ESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEE
T ss_pred CCcCEEEEECCCccHHHHHH-HHHccCC----EEEEE-ECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEE
Confidence 34679999999986533211 222 355 89999 999987765544 24 332 23333322 46899998
Q ss_pred eeCcccHHHHHHHhchhcCCCCEEEE
Q 024121 78 SVKPQVVKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 78 ~v~~~~~~~v~~~l~~~l~~~~~iis 103 (272)
..-......+++++...++||..++-
T Consensus 195 ~a~~~d~~~~l~el~r~LkPGG~Lvv 220 (298)
T 3fpf_A 195 AALAEPKRRVFRNIHRYVDTETRIIY 220 (298)
T ss_dssp CTTCSCHHHHHHHHHHHCCTTCEEEE
T ss_pred CCCccCHHHHHHHHHHHcCCCcEEEE
Confidence 76555666788888888888887764
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.023 Score=48.80 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=48.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHH-cCcee-ecC-------chhhhccCCEEEE
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFES-IGVKV-LSD-------NNAVVEYSDVVVF 77 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~--~~l~~-~g~~~-~~~-------~~~~~~~aDivil 77 (272)
.|+|.|.|. |.+|+++++.|++.|+ +|++. .|++++. +.+.. .++.. ..| ..++++++|+||.
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~ 79 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGH----HVRAQ-VHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 79 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTC----CEEEE-ESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC----EEEEE-ECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence 578999985 9999999999999999 99999 8887654 44443 24432 123 2345678999998
Q ss_pred eeC
Q 024121 78 SVK 80 (272)
Q Consensus 78 ~v~ 80 (272)
+..
T Consensus 80 ~a~ 82 (352)
T 1xgk_A 80 NTT 82 (352)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.072 Score=43.44 Aligned_cols=81 Identities=12% Similarity=0.154 Sum_probs=54.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.+++-|.|. |-+|.++++.|++.|+ +|.+. +|+.++.+++.+. . ..++.++.. .++.+
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~----------~--~~~~~~~~~D~~~~~~v 69 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREGA----TVAIA-DIDIERARQAAAE----------I--GPAAYAVQMDVTRQDSI 69 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH----------H--CTTEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH----------h--CCCceEEEeeCCCHHHH
Confidence 4466777765 9999999999999999 99999 9998877665431 0 112333333 23456
Q ss_pred HHHHHHhchhcCCCCEEEEEcC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+++++++...+.+=.++|++.+
T Consensus 70 ~~~~~~~~~~~g~id~lv~~Ag 91 (259)
T 4e6p_A 70 DAAIAATVEHAGGLDILVNNAA 91 (259)
T ss_dssp HHHHHHHHHHSSSCCEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 6677766555544457777643
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.056 Score=43.94 Aligned_cols=86 Identities=16% Similarity=0.096 Sum_probs=53.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee-----Cc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-----KP 81 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v-----~~ 81 (272)
++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+++.+. ..+. ...++.++.+ .+
T Consensus 10 l~~k~vlVTGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~~-~~~~~~~~~~D~~~~~~ 76 (252)
T 3f1l_A 10 LNDRIILVTGASDGIGREAAMTYARYGA----TVILL-GRNEEKLRQVASH-------INEE-TGRQPQWFILDLLTCTS 76 (252)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHHH-HSCCCEEEECCTTTCCH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHhh-cCCCceEEEEecccCCH
Confidence 34456666665 8999999999999999 99999 9998877665431 0010 0112222222 23
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEcC
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+.++++++++.....+=.++|+..+
T Consensus 77 ~~~~~~~~~~~~~~g~id~lv~nAg 101 (252)
T 3f1l_A 77 ENCQQLAQRIAVNYPRLDGVLHNAG 101 (252)
T ss_dssp HHHHHHHHHHHHHCSCCSEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCc
Confidence 3566677766555444457787643
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.036 Score=45.44 Aligned_cols=86 Identities=10% Similarity=0.120 Sum_probs=57.5
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---c
Q 024121 6 IPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---P 81 (272)
Q Consensus 6 ~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~ 81 (272)
..++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ..+ ...++.++.+. +
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~--~~~~~~~~~~Dv~~~ 72 (264)
T 3ucx_A 7 GLLTDKVVVISGVGPALGTTLARRCAEQGA----DLVLA-ARTVERLEDVAKQ-------VTD--TGRRALSVGTDITDD 72 (264)
T ss_dssp CTTTTCEEEEESCCTTHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCH
T ss_pred CCcCCcEEEEECCCcHHHHHHHHHHHHCcC----EEEEE-eCCHHHHHHHHHH-------HHh--cCCcEEEEEcCCCCH
Confidence 3345566777766 7899999999999999 99999 9998877665431 011 12345555443 3
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEc
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
+.++++++++...+.+=.++|+..
T Consensus 73 ~~v~~~~~~~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 73 AQVAHLVDETMKAYGRVDVVINNA 96 (264)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEECC
T ss_pred HHHHHHHHHHHHHcCCCcEEEECC
Confidence 456777777665554445788764
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.049 Score=43.83 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=54.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~ 84 (272)
.++++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+++.+. +. ..+.++... ++.+
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~----~V~~~-~r~~~~~~~~~~~-----------~~-~~~~~~~~D~~~~~~v 64 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGH----QVSMM-GRRYQRLQQQELL-----------LG-NAVIGIVADLAHHEDV 64 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-----------HG-GGEEEEECCTTSHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-----------hc-CCceEEECCCCCHHHH
Confidence 3456777765 8999999999999999 99999 9998877665431 01 123344332 3456
Q ss_pred HHHHHHhchhcCCCCEEEEEcC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+++++++...+.+=.++|+..+
T Consensus 65 ~~~~~~~~~~~g~id~lvnnAg 86 (235)
T 3l6e_A 65 DVAFAAAVEWGGLPELVLHCAG 86 (235)
T ss_dssp HHHHHHHHHHHCSCSEEEEECC
T ss_pred HHHHHHHHHhcCCCcEEEECCC
Confidence 6777766554444457787643
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.053 Score=44.15 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=52.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~ 84 (272)
+.+++-|.|. |-+|.++++.|.+.|+ +|++. +|++++.+.+.+. . ..++.++.+. ++.+
T Consensus 11 ~~k~vlVTGasggiG~~~a~~l~~~G~----~V~~~-~r~~~~~~~~~~~----------~--~~~~~~~~~D~~~~~~v 73 (265)
T 2o23_A 11 KGLVAVITGGASGLGLATAERLVGQGA----SAVLL-DLPNSGGEAQAKK----------L--GNNCVFAPADVTSEKDV 73 (265)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECTTSSHHHHHHH----------H--CTTEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCcHhHHHHHHH----------h--CCceEEEEcCCCCHHHH
Confidence 4467777765 9999999999999999 99999 9987766554331 0 1233343332 3456
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
+++++++...+.+=.++|++.
T Consensus 74 ~~~~~~~~~~~g~id~li~~A 94 (265)
T 2o23_A 74 QTALALAKGKFGRVDVAVNCA 94 (265)
T ss_dssp HHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHCCCCCEEEECC
Confidence 666666654443445777764
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.016 Score=48.60 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=38.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhcc--CCEEEEee
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY--SDVVVFSV 79 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~--aDivil~v 79 (272)
.|+|.|.|. |-+|+.+++.|++.|+ +|++. +|+++... .....+.-..+..+++++ +|+||-+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A 68 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNW----HAVGC-GFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCA 68 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTC----EEEEE-C-------------------CHHHHHHHCCSEEEECC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCC----eEEEE-ccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECC
Confidence 478999987 9999999999999999 99999 88754311 111111111233445553 89999875
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.028 Score=49.78 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=51.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHH----HHH--cCcee--e
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDA----FES--IGVKV--L 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~~----l~~--~g~~~--~ 62 (272)
..||.|||+|.+|+.++.+|..+|. .+++++ |.+. .|++. +.+ .++.+ .
T Consensus 40 ~~~VlvvG~GGlGs~va~~La~aGv---g~i~iv-D~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~ 115 (434)
T 1tt5_B 40 TCKVLVIGAGGLGCELLKNLALSGF---RQIHVI-DMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPH 115 (434)
T ss_dssp TCCEEEECSSTHHHHHHHHHHHTTC---CCEEEE-ECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCC---CEEEEE-cCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEE
Confidence 4689999999999999999999997 378777 5421 12322 222 22322 1
Q ss_pred -----cCchhhhccCCEEEEeeCcccHHHHHHH
Q 024121 63 -----SDNNAVVEYSDVVVFSVKPQVVKDVAMQ 90 (272)
Q Consensus 63 -----~~~~~~~~~aDivil~v~~~~~~~v~~~ 90 (272)
....+.++++|+||.|+.....+..+..
T Consensus 116 ~~~i~~~~~~~~~~~DlVi~~~Dn~~~R~~in~ 148 (434)
T 1tt5_B 116 FNKIQDFNDTFYRQFHIIVCGLDSIIARRWING 148 (434)
T ss_dssp ESCGGGBCHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred ecccchhhHHHhcCCCEEEECCCCHHHHHHHHH
Confidence 1224667889999999866555545444
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.078 Score=43.42 Aligned_cols=86 Identities=14% Similarity=0.076 Sum_probs=55.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---ccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~ 83 (272)
++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ..+......+.++... ++.
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dv~~~~~ 73 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGA----AVAFC-ARDGERLRAAESA-------LRQRFPGARLFASVCDVLDALQ 73 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHHHSTTCCEEEEECCTTCHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHHhcCCceEEEEeCCCCCHHH
Confidence 34556666665 8999999999999999 99999 9998877655431 0110112234444432 345
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
+..+++++...+.+=.++|+..
T Consensus 74 v~~~~~~~~~~~g~id~lvnnA 95 (265)
T 3lf2_A 74 VRAFAEACERTLGCASILVNNA 95 (265)
T ss_dssp HHHHHHHHHHHHCSCSEEEECC
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 6677777655544445778764
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.016 Score=52.68 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=36.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
..+++.|+|+|-+|.+++..|.+.|. +|+++ +|+.++++.+.+
T Consensus 363 ~~k~vlV~GaGGig~aia~~L~~~G~----~V~i~-~R~~~~a~~la~ 405 (523)
T 2o7s_A 363 ASKTVVVIGAGGAGKALAYGAKEKGA----KVVIA-NRTYERALELAE 405 (523)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHHCC-----CEEE-ESSHHHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence 45679999999999999999999998 89999 999998887765
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.016 Score=49.85 Aligned_cols=44 Identities=11% Similarity=0.087 Sum_probs=36.3
Q ss_pred CCCCCCCCCCCeEEEEcc-cHHHHHHHHHHHh--CCCCCCCcEEEEeCCCHH
Q 024121 1 MDAFPIPAESFILGFIGA-GKMAESIAKGVAK--SGVLPPDRICTAVHSNLK 49 (272)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~-G~mG~~la~~l~~--~g~~~~~~V~v~~~r~~~ 49 (272)
|..++..+++|+|.|.|. |-+|+.++..|++ .|+ +|++. +|++.
T Consensus 1 M~~~~~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~----~V~~~-~r~~~ 47 (362)
T 3sxp_A 1 MRYIDDELENQTILITGGAGFVGSNLAFHFQENHPKA----KVVVL-DKFRS 47 (362)
T ss_dssp CCSSSCCCTTCEEEEETTTSHHHHHHHHHHHHHCTTS----EEEEE-ECCCC
T ss_pred CcccchhcCCCEEEEECCCCHHHHHHHHHHHhhCCCC----eEEEE-ECCCc
Confidence 555555566789999965 9999999999999 899 99999 88653
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.026 Score=46.44 Aligned_cols=84 Identities=19% Similarity=0.201 Sum_probs=54.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---ccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~ 83 (272)
++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+++.+. ..+ ...++.++.+. ++.
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~----~V~~~-~r~~~~~~~~~~~-------l~~--~~~~~~~~~~Dv~d~~~ 67 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGA----KILLG-ARRQARIEAIATE-------IRD--AGGTALAQVLDVTDRHS 67 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHH-------HHH--TTCEEEEEECCTTCHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCcEEEEEcCCCCHHH
Confidence 34556666665 8999999999999999 99999 9998877665431 001 12233344332 345
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
++.+++++...+.+=.++|+..
T Consensus 68 v~~~~~~~~~~~g~iD~lVnnA 89 (264)
T 3tfo_A 68 VAAFAQAAVDTWGRIDVLVNNA 89 (264)
T ss_dssp HHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 6667766655444445777754
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.01 Score=51.51 Aligned_cols=34 Identities=32% Similarity=0.552 Sum_probs=31.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
.|||.|||+|.-|.++|..|.+.|+ +|.++ +|++
T Consensus 1 sm~V~IVGaGpaGl~~A~~L~~~G~----~v~v~-Er~~ 34 (412)
T 4hb9_A 1 SMHVGIIGAGIGGTCLAHGLRKHGI----KVTIY-ERNS 34 (412)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC----CEEEE-ecCC
Confidence 4899999999999999999999999 99999 7754
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.11 Score=42.40 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=54.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cc
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQ 82 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~ 82 (272)
.++.+++-|.|. |-+|.++++.|++.|+ +|.+. +|++++.+.+.+. ..+ ...++.++... ++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~~~~ 69 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGT----AIALL-DMNREALEKAEAS-------VRE--KGVEARSYVCDVTSEE 69 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHT--TTSCEEEEECCTTCHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHh--cCCcEEEEEecCCCHH
Confidence 345567777765 8999999999999999 99999 9998776654331 000 12234444332 34
Q ss_pred cHHHHHHHhchhcCCCCEEEEEc
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
.+..+++++...+.+=.++|+..
T Consensus 70 ~~~~~~~~~~~~~g~id~lv~nA 92 (262)
T 1zem_A 70 AVIGTVDSVVRDFGKIDFLFNNA 92 (262)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHhCCCCEEEECC
Confidence 56666666655444445777764
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.025 Score=46.23 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=56.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cc
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQ 82 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~ 82 (272)
.++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+++.+. + .+ ...++.++... ++
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~------~~--~~~~~~~~~~Dv~~~~ 68 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGA----RVVIT-GRTKEKLEEAKLE-I------EQ--FPGQILTVQMDVRNTD 68 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-H------CC--STTCEEEEECCTTCHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-H------Hh--cCCcEEEEEccCCCHH
Confidence 345566766665 8999999999999999 99999 9999887765431 0 00 12244444432 34
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcC
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
.++++++++...+.+=.++|+..+
T Consensus 69 ~v~~~~~~~~~~~g~id~lv~nAg 92 (257)
T 3imf_A 69 DIQKMIEQIDEKFGRIDILINNAA 92 (257)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 567777776655444457787643
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.059 Score=43.97 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=53.4
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHHH
Q 024121 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~~ 86 (272)
++|-|-| .+-||.++++.|.+.|+ +|.+. +|++++.+++.+.+ .++..+.. .++++++
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga----~V~~~-~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~v~~ 64 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGD----KVCFI-DIDEKRSADFAKER-------------PNLFYFHGDVADPLTLKK 64 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHTTC-------------TTEEEEECCTTSHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHhc-------------CCEEEEEecCCCHHHHHH
Confidence 4455555 58899999999999999 99999 99988877665432 12333332 3456777
Q ss_pred HHHHhchhcCCCCEEEEEc
Q 024121 87 VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~ 105 (272)
+++++...+.+=.++|+..
T Consensus 65 ~v~~~~~~~g~iDiLVNNA 83 (247)
T 3ged_A 65 FVEYAMEKLQRIDVLVNNA 83 (247)
T ss_dssp HHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHcCCCCEEEECC
Confidence 7777766555545778653
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.059 Score=49.02 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=51.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---H----------------HHH----HHHHc--Ccee--e
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---K----------------RRD----AFESI--GVKV--L 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---~----------------~~~----~l~~~--g~~~--~ 62 (272)
..+|.|||+|.+|+.++++|..+|. .+++++ |.+. . |++ .+.+. .+.+ .
T Consensus 32 ~~~VlvvG~GGlGseiak~La~aGV---g~itlv-D~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~ 107 (531)
T 1tt5_A 32 SAHVCLINATATGTEILKNLVLPGI---GSFTII-DGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFV 107 (531)
T ss_dssp HCEEEEECCSHHHHHHHHHHHTTTC---SEEEEE-CCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEE
T ss_pred cCeEEEECcCHHHHHHHHHHHHcCC---CeEEEE-eCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEe
Confidence 3689999999999999999999997 378888 7543 1 222 22222 2322 1
Q ss_pred c--------CchhhhccCCEEEEeeCcccHHHHHHHh
Q 024121 63 S--------DNNAVVEYSDVVVFSVKPQVVKDVAMQI 91 (272)
Q Consensus 63 ~--------~~~~~~~~aDivil~v~~~~~~~v~~~l 91 (272)
. +..+.+.+.|+||.|+.....+..+...
T Consensus 108 ~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~ 144 (531)
T 1tt5_A 108 EESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADV 144 (531)
T ss_dssp SSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHH
T ss_pred CCCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHHH
Confidence 1 2235677899999997655554444443
|
| >1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.073 Score=46.25 Aligned_cols=88 Identities=14% Similarity=0.081 Sum_probs=53.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEE-eCCCHHHHHHHHH-cCceee--cC--------------------
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTA-VHSNLKRRDAFES-IGVKVL--SD-------------------- 64 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~-~~r~~~~~~~l~~-~g~~~~--~~-------------------- 64 (272)
++||+|+|+ |.+|+....-+.++.. ..+|... .+++.+++.+..+ .+.... .+
T Consensus 4 m~rI~ILGsTGSIG~~~l~vi~~~p~--~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~v~~ 81 (388)
T 1r0k_A 4 PRTVTVLGATGSIGHSTLDLIERNLD--RYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAA 81 (388)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGG--GEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEE
T ss_pred ceEEEEECCCeEeHHHHHHHHHhCcC--cEEEEEEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcEEEe
Confidence 478999999 9999999988887531 0144421 3888877655443 343211 11
Q ss_pred ----chhhhc-cCCEEEEeeCcc-cHHHHHHHhchhcCCCCEEEE
Q 024121 65 ----NNAVVE-YSDVVVFSVKPQ-VVKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 65 ----~~~~~~-~aDivil~v~~~-~~~~v~~~l~~~l~~~~~iis 103 (272)
..+++. ..|+|+.+++.. .+..++..+ +.|+.|+.
T Consensus 82 g~~~~~el~~~~iDvVV~ai~G~aGl~ptlaAi----~aGK~Vvl 122 (388)
T 1r0k_A 82 GADALVEAAMMGADWTMAAIIGCAGLKATLAAI----RKGKTVAL 122 (388)
T ss_dssp SHHHHHHHHTSCCSEEEECCCSGGGHHHHHHHH----HTTSEEEE
T ss_pred CccHHHHHHcCCCCEEEEeCCCHHHHHHHHHHH----HCCCEEEE
Confidence 112332 279999998643 455554443 46677774
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.12 Score=45.27 Aligned_cols=93 Identities=11% Similarity=0.097 Sum_probs=61.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCc-----hhh----h--ccCCEEE
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN-----NAV----V--EYSDVVV 76 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~-----~~~----~--~~aDivi 76 (272)
....+|.|+|+|.+|...++.+...|. .+|++. ++++++.+.+++.|+...-+. .+. . ...|+||
T Consensus 212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga---~~Vi~~-~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vi 287 (404)
T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKHAGA---SKVILS-EPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFL 287 (404)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEE
Confidence 345689999999999988887777775 268888 999999888888886432111 111 1 2589999
Q ss_pred EeeCcc--cHHHHHHHhchhcCCCCEEEEE
Q 024121 77 FSVKPQ--VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 77 l~v~~~--~~~~v~~~l~~~l~~~~~iis~ 104 (272)
-|+... .....+..+...++++..++.+
T Consensus 288 d~~g~~~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 288 EATGVPQLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp ECSSCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred ECCCCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence 998654 3334433331222566666654
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.056 Score=43.28 Aligned_cols=81 Identities=22% Similarity=0.304 Sum_probs=52.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
.||.+++|+ |+||+.+.+.....++ ++....++... .+ +.++|++|=-+.|+.+.+.+
T Consensus 12 ~~~~~v~Ga~GrMG~~i~~~~~~~~~----elv~~id~~~~-------------~~----l~~~DVvIDFT~P~a~~~~~ 70 (228)
T 1vm6_A 12 HMKYGIVGYSGRMGQEIQKVFSEKGH----ELVLKVDVNGV-------------EE----LDSPDVVIDFSSPEALPKTV 70 (228)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEEETTEE-------------EE----CSCCSEEEECSCGGGHHHHH
T ss_pred cceeEEEEecCHHHHHHHHHHhCCCC----EEEEEEcCCCc-------------cc----ccCCCEEEECCCHHHHHHHH
Confidence 489999998 9999999886666676 66533265431 11 24789999565666666655
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHH
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQ 114 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~ 114 (272)
+.... .+..+|..++|.+.++++
T Consensus 71 ~~~~~---~g~~~ViGTTG~~~~~~~ 93 (228)
T 1vm6_A 71 DLCKK---YRAGLVLGTTALKEEHLQ 93 (228)
T ss_dssp HHHHH---HTCEEEECCCSCCHHHHH
T ss_pred HHHHH---cCCCEEEeCCCCCHHHHH
Confidence 54332 345566566788876543
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0049 Score=52.37 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=49.3
Q ss_pred CCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--cCcee-ecC------chhhhc--
Q 024121 3 AFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKV-LSD------NNAVVE-- 70 (272)
Q Consensus 3 ~~~~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--~g~~~-~~~------~~~~~~-- 70 (272)
.-|..++.|+|.|.|+ |-+|+.+++.|++.|+ +|++. +|+......+.+ .++.. ..| ..++++
T Consensus 13 ~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~ 87 (330)
T 2pzm_A 13 GLVPRGSHMRILITGGAGCLGSNLIEHWLPQGH----EILVI-DNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSF 87 (330)
T ss_dssp -CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTC----EEEEE-ECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCcccCCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhc
Confidence 3466677799999987 9999999999999999 99999 886433211111 13321 111 234566
Q ss_pred cCCEEEEee
Q 024121 71 YSDVVVFSV 79 (272)
Q Consensus 71 ~aDivil~v 79 (272)
++|+||-+.
T Consensus 88 ~~D~vih~A 96 (330)
T 2pzm_A 88 KPTHVVHSA 96 (330)
T ss_dssp CCSEEEECC
T ss_pred CCCEEEECC
Confidence 899999886
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.077 Score=43.08 Aligned_cols=81 Identities=11% Similarity=0.067 Sum_probs=53.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Cccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~ 83 (272)
++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+++.+. . ..++.++.. .++.
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~----------~--~~~~~~~~~D~~~~~~ 66 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEGA----KVAFS-DINEAAGQQLAAE----------L--GERSMFVRHDVSSEAD 66 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHH----------H--CTTEEEECCCTTCHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH----------c--CCceEEEEccCCCHHH
Confidence 45567777765 9999999999999999 99999 9998876655431 0 123333333 2345
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
++++++++...+.+=.++|++.
T Consensus 67 v~~~~~~~~~~~g~id~lv~~A 88 (253)
T 1hxh_A 67 WTLVMAAVQRRLGTLNVLVNNA 88 (253)
T ss_dssp HHHHHHHHHHHHCSCCEEEECC
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 6666666654443435777764
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.03 Score=47.78 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=48.1
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH----HHHHHHH-------cCceee-cC------chhh
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK----RRDAFES-------IGVKVL-SD------NNAV 68 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~----~~~~l~~-------~g~~~~-~~------~~~~ 68 (272)
+++|+|.|.|+ |-+|+.+++.|++.|+ +|++. +|++. +.+.+.+ .++... .| ..++
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 99 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQ----KVVGL-DNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNA 99 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHH
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHH
Confidence 35678999987 9999999999999999 99999 88642 3333321 233321 12 2345
Q ss_pred hccCCEEEEeeC
Q 024121 69 VEYSDVVVFSVK 80 (272)
Q Consensus 69 ~~~aDivil~v~ 80 (272)
++++|+||-+..
T Consensus 100 ~~~~d~vih~A~ 111 (352)
T 1sb8_A 100 CAGVDYVLHQAA 111 (352)
T ss_dssp HTTCSEEEECCS
T ss_pred hcCCCEEEECCc
Confidence 678999998864
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.1 Score=41.94 Aligned_cols=86 Identities=14% Similarity=0.114 Sum_probs=54.0
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Cccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~ 83 (272)
++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ..+ ....++.++.. .++.
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~-~~~~~~~~~~~D~~~~~~ 71 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAGS----TVIIT-GTSGERAKAVAEE-------IAN-KYGVKAHGVEMNLLSEES 71 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHH-------HHH-HHCCCEEEEECCTTCHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCChHHHHHHHHH-------HHh-hcCCceEEEEccCCCHHH
Confidence 34566777765 9999999999999999 99999 9998776654320 000 01223333333 2345
Q ss_pred HHHHHHHhchhcCCCCEEEEEcC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
++++++++...+.+=.++|++.+
T Consensus 72 ~~~~~~~~~~~~~~~d~vi~~Ag 94 (248)
T 2pnf_A 72 INKAFEEIYNLVDGIDILVNNAG 94 (248)
T ss_dssp HHHHHHHHHHHSSCCSEEEECCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66666666554444457777643
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.043 Score=45.24 Aligned_cols=82 Identities=11% Similarity=0.061 Sum_probs=51.6
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHH
Q 024121 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (272)
Q Consensus 10 ~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~ 85 (272)
.+++-|.| .|-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ..+ ...++.++.+ .++.++
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~----~V~~~-~r~~~~~~~~~~~-------~~~--~~~~~~~~~~Dv~d~~~v~ 93 (270)
T 3ftp_A 28 KQVAIVTGASRGIGRAIALELARRGA----MVIGT-ATTEAGAEGIGAA-------FKQ--AGLEGRGAVLNVNDATAVD 93 (270)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHH-------HHH--HTCCCEEEECCTTCHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHh--cCCcEEEEEEeCCCHHHHH
Confidence 34455555 58999999999999999 99999 9998877655431 001 0122223322 234567
Q ss_pred HHHHHhchhcCCCCEEEEEc
Q 024121 86 DVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~ 105 (272)
++++++...+.+=.++|+..
T Consensus 94 ~~~~~~~~~~g~iD~lvnnA 113 (270)
T 3ftp_A 94 ALVESTLKEFGALNVLVNNA 113 (270)
T ss_dssp HHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 77776655544445777764
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.054 Score=44.56 Aligned_cols=85 Identities=16% Similarity=0.109 Sum_probs=54.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---ccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~ 83 (272)
+..++|-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ..+ ...++.++... ++.
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~G~----~V~~~-~r~~~~~~~~~~~-------l~~--~~~~~~~~~~Dl~~~~~ 94 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLKS----KLVLW-DINKHGLEETAAK-------CKG--LGAKVHTFVVDCSNRED 94 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-EcCHHHHHHHHHH-------HHh--cCCeEEEEEeeCCCHHH
Confidence 34467777765 9999999999999999 99999 9998776654321 000 02234444432 345
Q ss_pred HHHHHHHhchhcCCCCEEEEEcC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+.++++++...+.+=.++|++.+
T Consensus 95 v~~~~~~~~~~~g~iD~li~~Ag 117 (272)
T 1yb1_A 95 IYSSAKKVKAEIGDVSILVNNAG 117 (272)
T ss_dssp HHHHHHHHHHHTCCCSEEEECCC
T ss_pred HHHHHHHHHHHCCCCcEEEECCC
Confidence 66666666544444457777643
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.023 Score=48.18 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=45.5
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH---H---HHHH-cCceee-------cCchhhhccCC
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR---D---AFES-IGVKVL-------SDNNAVVEYSD 73 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~---~---~l~~-~g~~~~-------~~~~~~~~~aD 73 (272)
+.|+|.|.| +|-+|+.+++.|++.|+ +|.+. .|++++. . .+.. .++... .+..++++++|
T Consensus 8 ~~~~vlVTGatGfIG~~l~~~Ll~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D 82 (338)
T 2rh8_A 8 GKKTACVVGGTGFVASLLVKLLLQKGY----AVNTT-VRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCD 82 (338)
T ss_dssp -CCEEEEECTTSHHHHHHHHHHHHTTC----EEEEE-ESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCS
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC----EEEEE-EcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCC
Confidence 367899998 69999999999999999 99987 7765432 1 2211 233321 12345677899
Q ss_pred EEEEee
Q 024121 74 VVVFSV 79 (272)
Q Consensus 74 ivil~v 79 (272)
+||-+.
T Consensus 83 ~Vih~A 88 (338)
T 2rh8_A 83 FVFHVA 88 (338)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 999764
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.084 Score=43.62 Aligned_cols=79 Identities=16% Similarity=0.128 Sum_probs=52.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~~ 86 (272)
+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+++.+. . ...+.++.+ .++.+++
T Consensus 28 k~vlVTGas~GIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-----------~-~~~~~~~~~Dv~d~~~v~~ 90 (277)
T 4dqx_A 28 RVCIVTGGGSGIGRATAELFAKNGA----YVVVA-DVNEDAAVRVANE-----------I-GSKAFGVRVDVSSAKDAES 90 (277)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHH-----------H-CTTEEEEECCTTCHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-----------h-CCceEEEEecCCCHHHHHH
Confidence 45556654 8999999999999999 99999 9998877665542 0 123333333 2345666
Q ss_pred HHHHhchhcCCCCEEEEEcC
Q 024121 87 VAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~ 106 (272)
+++++...+.+=.++|+..+
T Consensus 91 ~~~~~~~~~g~iD~lv~nAg 110 (277)
T 4dqx_A 91 MVEKTTAKWGRVDVLVNNAG 110 (277)
T ss_dssp HHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 67666554444457777643
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.13 Score=43.72 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=51.8
Q ss_pred CCCCCeEEEEccc--HHHHHHHHHHHhCCCCCCCcEEEEeCCC-----HHHHHHHH----HcC--ceeecCchhhhccCC
Q 024121 7 PAESFILGFIGAG--KMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFE----SIG--VKVLSDNNAVVEYSD 73 (272)
Q Consensus 7 ~~~~~~IgiIG~G--~mG~~la~~l~~~g~~~~~~V~v~~~r~-----~~~~~~l~----~~g--~~~~~~~~~~~~~aD 73 (272)
..+..||+|+|=| ++..+++..+.+-|. +|++. .+. ++-.+.+. +.| +.++.++.++++++|
T Consensus 152 ~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~----~v~~~-~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aD 226 (333)
T 1duv_G 152 AFNEMTLVYAGDARNNMGNSMLEAAALTGL----DLRLV-APQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGAD 226 (333)
T ss_dssp CGGGCEEEEESCTTSHHHHHHHHHHHHHCC----EEEEE-CCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCS
T ss_pred CCCCcEEEEECCCccchHHHHHHHHHHcCC----EEEEE-CCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCC
Confidence 3467899999986 999999999999998 99888 542 22222222 356 556889999999999
Q ss_pred EEEEee
Q 024121 74 VVVFSV 79 (272)
Q Consensus 74 ivil~v 79 (272)
+|..-+
T Consensus 227 vvytd~ 232 (333)
T 1duv_G 227 FIYTDV 232 (333)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 999865
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.13 Score=43.74 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=51.4
Q ss_pred CCCCeEEEEccc--HHHHHHHHHHHhCCCCCCCcEEEEeCCC-----HHHHHHHH----HcC--ceeecCchhhhccCCE
Q 024121 8 AESFILGFIGAG--KMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFE----SIG--VKVLSDNNAVVEYSDV 74 (272)
Q Consensus 8 ~~~~~IgiIG~G--~mG~~la~~l~~~g~~~~~~V~v~~~r~-----~~~~~~l~----~~g--~~~~~~~~~~~~~aDi 74 (272)
.+..||+|+|=| ++..++...+.+-|. +|++. .+. ++-.+.+. +.| +.++.++.++++++|+
T Consensus 153 l~gl~va~vGD~~~~va~Sl~~~~~~~G~----~v~~~-~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDv 227 (335)
T 1dxh_A 153 LHDISYAYLGDARNNMGNSLLLIGAKLGM----DVRIA-APKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDF 227 (335)
T ss_dssp GGGCEEEEESCCSSHHHHHHHHHHHHTTC----EEEEE-CCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSE
T ss_pred cCCeEEEEecCCccchHHHHHHHHHHcCC----EEEEE-CCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCE
Confidence 456899999996 999999999999998 99888 542 22222222 356 5568899999999999
Q ss_pred EEEee
Q 024121 75 VVFSV 79 (272)
Q Consensus 75 vil~v 79 (272)
|..-+
T Consensus 228 vytd~ 232 (335)
T 1dxh_A 228 VHTDV 232 (335)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99865
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.02 Score=49.75 Aligned_cols=95 Identities=9% Similarity=0.116 Sum_probs=65.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------HHHHHHHH------cCceeecCchhhhccCC
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------KRRDAFES------IGVKVLSDNNAVVEYSD 73 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------~~~~~l~~------~g~~~~~~~~~~~~~aD 73 (272)
.....||.|+|.|.-|.++++-+...|. .+|+++ |++- ++++.+++ .......++.|+++++|
T Consensus 185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga---~~I~v~-D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~AD 260 (398)
T 2a9f_A 185 SLDEVSIVVNGGGSAGLSITRKLLAAGA---TKVTVV-DKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGAD 260 (398)
T ss_dssp CTTSCEEEEECCSHHHHHHHHHHHHHTC---CEEEEE-ETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTC
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHcCC---CeEEEE-ECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCC
Confidence 4456799999999999999999999886 489999 8752 12222222 11112346889999999
Q ss_pred EEEEeeCcc-cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 74 VVVFSVKPQ-VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 74 ivil~v~~~-~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
++|=+..|. .-++++..+ .++.+|+.++++.+
T Consensus 261 V~IG~Sapgl~T~EmVk~M----a~~pIIfalsNPt~ 293 (398)
T 2a9f_A 261 IFIGVSAPGVLKAEWISKM----AARPVIFAMANPIP 293 (398)
T ss_dssp SEEECCSTTCCCHHHHHTS----CSSCEEEECCSSSC
T ss_pred EEEecCCCCCCCHHHHHhh----CCCCEEEECCCCCc
Confidence 977555444 356777665 47889999888764
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.014 Score=49.63 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=46.0
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH---cCceee-cC------chhhhc--
Q 024121 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES---IGVKVL-SD------NNAVVE-- 70 (272)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~---~g~~~~-~~------~~~~~~-- 70 (272)
++.|+|.|.| +|-+|+++++.|++.|+ +|++. +|++++... +.+ .++... .| ..++++
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (341)
T 3enk_A 3 STKGTILVTGGAGYIGSHTAVELLAHGY----DVVIA-DNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAH 77 (341)
T ss_dssp CSSCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-CCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHS
T ss_pred CCCcEEEEecCCcHHHHHHHHHHHHCCC----cEEEE-ecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhcc
Confidence 4567899997 59999999999999999 99999 887544322 221 133321 12 233444
Q ss_pred cCCEEEEee
Q 024121 71 YSDVVVFSV 79 (272)
Q Consensus 71 ~aDivil~v 79 (272)
+.|+||-+.
T Consensus 78 ~~d~vih~A 86 (341)
T 3enk_A 78 PITAAIHFA 86 (341)
T ss_dssp CCCEEEECC
T ss_pred CCcEEEECc
Confidence 789999875
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.079 Score=43.10 Aligned_cols=80 Identities=16% Similarity=0.200 Sum_probs=54.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~ 85 (272)
.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+++.+. . ..++.++.+ .++.++
T Consensus 9 ~k~vlITGas~gIG~~~a~~l~~~G~----~V~~~-~r~~~~~~~~~~~-----------~-~~~~~~~~~D~~~~~~~~ 71 (261)
T 3n74_A 9 GKVALITGAGSGFGEGMAKRFAKGGA----KVVIV-DRDKAGAERVAGE-----------I-GDAALAVAADISKEADVD 71 (261)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-----------H-CTTEEEEECCTTSHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHH-----------h-CCceEEEEecCCCHHHHH
Confidence 456777765 8899999999999999 99999 9999887766541 0 123333333 234566
Q ss_pred HHHHHhchhcCCCCEEEEEcC
Q 024121 86 DVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~ 106 (272)
++++++...+.+=.++|++.+
T Consensus 72 ~~~~~~~~~~g~id~li~~Ag 92 (261)
T 3n74_A 72 AAVEAALSKFGKVDILVNNAG 92 (261)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHhcCCCCEEEECCc
Confidence 677666554444457777643
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.074 Score=43.23 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=54.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---ccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~ 83 (272)
++.++|-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. +.... ..+.....++.++... ++.
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~D~~~~~~ 77 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGEGA----TVAAC-DLDRAAAQETVRL-LGGPG-SKEGPPRGNHAAFQADVSEARA 77 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHT-C-------------CCEEEECCTTSHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCChHHHHHHHHH-HHhcC-ccccccCcceEEEEecCCCHHH
Confidence 45567888865 9999999999999999 99999 9998877665431 10000 0000111344444433 334
Q ss_pred HHHHHHHhchhcCCC-CEEEEEcC
Q 024121 84 VKDVAMQIRPLLSRK-KLLVSVAA 106 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~-~~iis~~~ 106 (272)
+.++++++...+.+= .++|++.+
T Consensus 78 ~~~~~~~~~~~~g~i~d~vi~~Ag 101 (264)
T 2pd6_A 78 ARCLLEQVQACFSRPPSVVVSCAG 101 (264)
T ss_dssp HHHHHHHHHHHHSSCCSEEEECCC
T ss_pred HHHHHHHHHHHhCCCCeEEEECCC
Confidence 666666655444332 57787643
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.041 Score=45.59 Aligned_cols=86 Identities=16% Similarity=0.079 Sum_probs=53.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cc
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQ 82 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~ 82 (272)
|++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ..+ ...++.++.+. ++
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~la~~G~----~V~~~-~r~~~~~~~~~~~-------l~~--~~~~~~~~~~Dv~d~~ 86 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTLAARGI----AVYGC-ARDAKNVSAAVDG-------LRA--AGHDVDGSSCDVTSTD 86 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHT--TTCCEEEEECCTTCHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHh--cCCcEEEEECCCCCHH
Confidence 333455666665 8999999999999999 99999 9998877655431 000 12344444443 34
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcC
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
.++++++++...+.+=.++|+..+
T Consensus 87 ~v~~~~~~~~~~~g~id~lv~nAg 110 (279)
T 3sju_A 87 EVHAAVAAAVERFGPIGILVNSAG 110 (279)
T ss_dssp HHHHHHHHHHHHHCSCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCCcEEEECCC
Confidence 566677766554444457777643
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.11 Score=42.66 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=54.8
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHHH
Q 024121 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~~ 86 (272)
+++-|.| .|-+|.++++.|.+.|+ +|.+. +|++++.+++.+. ..+ ....++.++.. .++.+++
T Consensus 21 k~vlVTGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------l~~-~~~~~~~~~~~Dv~~~~~v~~ 87 (266)
T 4egf_A 21 KRALITGATKGIGADIARAFAAAGA----RLVLS-GRDVSELDAARRA-------LGE-QFGTDVHTVAIDLAEPDAPAE 87 (266)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH-HHCCCEEEEECCTTSTTHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHH-hcCCcEEEEEecCCCHHHHHH
Confidence 4555555 58999999999999999 99999 9998877655431 001 01234555544 3456777
Q ss_pred HHHHhchhcCCCCEEEEEcC
Q 024121 87 VAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~ 106 (272)
+++++...+.+=.++|+..+
T Consensus 88 ~~~~~~~~~g~id~lv~nAg 107 (266)
T 4egf_A 88 LARRAAEAFGGLDVLVNNAG 107 (266)
T ss_dssp HHHHHHHHHTSCSEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 77777655544457887643
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.058 Score=44.11 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=53.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccHHH
Q 024121 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVVKD 86 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~~~ 86 (272)
+++-|.| .|-+|.++++.|++.|+ +|.+. +|++++.+.+.+. ..+ ...++.++.+. ++.+.+
T Consensus 30 k~vlITGas~gIG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~~~~~v~~ 95 (262)
T 3rkr_A 30 QVAVVTGASRGIGAAIARKLGSLGA----RVVLT-ARDVEKLRAVERE-------IVA--AGGEAESHACDLSHSDAIAA 95 (262)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCEEEEEECCTTCHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHH--hCCceeEEEecCCCHHHHHH
Confidence 5566666 49999999999999999 99999 9998877665431 000 12233333332 345666
Q ss_pred HHHHhchhcCCCCEEEEEcC
Q 024121 87 VAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~ 106 (272)
+++++.....+=.++|++.+
T Consensus 96 ~~~~~~~~~g~id~lv~~Ag 115 (262)
T 3rkr_A 96 FATGVLAAHGRCDVLVNNAG 115 (262)
T ss_dssp HHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHhcCCCCEEEECCC
Confidence 77666554444457777643
|
| >3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.11 Score=44.24 Aligned_cols=44 Identities=11% Similarity=0.264 Sum_probs=34.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES 56 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~l~~ 56 (272)
.++||||.|.|++|+.+++.+...|. +|...+|+ +.+.+..+.+
T Consensus 6 ~~~kvgInGFGRIGrlv~R~~~~~~v----eivainDp~~d~~~~a~l~~ 51 (346)
T 3h9e_O 6 RELTVGINGFGRIGRLVLRACMEKGV----KVVAVNDPFIDPEYMVYMFK 51 (346)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC----EEEEEECTTCCHHHHHHHHH
T ss_pred CeeEEEEECCChHHHHHHHHHHhCCC----EEEEEeCCCCChhHhccccc
Confidence 45799999999999999999888876 87765364 5666666655
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0092 Score=54.17 Aligned_cols=62 Identities=11% Similarity=0.174 Sum_probs=46.3
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee
Q 024121 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 10 ~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v 79 (272)
+|||.|.| +|.+|+.++..|++.|+ +|++. +|++.+.+.. .....+...+++.++|+||-+.
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~----~V~~l-~R~~~~~~~v---~~d~~~~~~~~l~~~D~Vih~A 209 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGH----EVIQL-VRKEPKPGKR---FWDPLNPASDLLDGADVLVHLA 209 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESSSCCTTCE---ECCTTSCCTTTTTTCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCCCCccce---eecccchhHHhcCCCCEEEECC
Confidence 68999998 59999999999999999 99999 8887653210 0111123355678899999875
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.035 Score=47.92 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=58.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---HHHHHHHHcCceeec--Cchhhh----ccCCEEEEeeC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---KRRDAFESIGVKVLS--DNNAVV----EYSDVVVFSVK 80 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---~~~~~l~~~g~~~~~--~~~~~~----~~aDivil~v~ 80 (272)
..+|.|+|+|.+|...++.+...|. +|++. ++++ ++.+.+++.|+...+ +..+.+ ...|+||-++.
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga----~Vi~~-~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g 255 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL----EVWMA-NRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATG 255 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC----EEEEE-ESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-eCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCC
Confidence 6789999999999999999988998 99999 9988 887777777765431 111111 24788888886
Q ss_pred cc-cH-HHHHHHhchhcCCCCEEEEE
Q 024121 81 PQ-VV-KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 81 ~~-~~-~~v~~~l~~~l~~~~~iis~ 104 (272)
.. .+ ...+ +.++++..++.+
T Consensus 256 ~~~~~~~~~~----~~l~~~G~iv~~ 277 (366)
T 2cdc_A 256 ADVNILGNVI----PLLGRNGVLGLF 277 (366)
T ss_dssp CCTHHHHHHG----GGEEEEEEEEEC
T ss_pred ChHHHHHHHH----HHHhcCCEEEEE
Confidence 53 33 3333 333444455543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.13 Score=44.28 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=59.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecC-------chhhhc-----cCCEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD-------NNAVVE-----YSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~-------~~~~~~-----~aDivi 76 (272)
...+|.|+|+|.+|...++.....|. .+|++. ++++++.+.+++.|+...-+ ..+.+. ..|+||
T Consensus 191 ~g~~VlV~GaG~vG~~aiqlak~~Ga---~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvi 266 (373)
T 1p0f_A 191 PGSTCAVFGLGGVGFSAIVGCKAAGA---SRIIGV-GTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAV 266 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC---CeEEEE-CCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEE
Confidence 45689999999999988887777775 258888 99999988888888642211 112121 579999
Q ss_pred EeeCc-ccHHHHHHHhchhcCCC-CEEEEE
Q 024121 77 FSVKP-QVVKDVAMQIRPLLSRK-KLLVSV 104 (272)
Q Consensus 77 l~v~~-~~~~~v~~~l~~~l~~~-~~iis~ 104 (272)
-|+.. ..+...+ ..++++ ..++.+
T Consensus 267 d~~g~~~~~~~~~----~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 267 ECAGRIETMMNAL----QSTYCGSGVTVVL 292 (373)
T ss_dssp ECSCCHHHHHHHH----HTBCTTTCEEEEC
T ss_pred ECCCCHHHHHHHH----HHHhcCCCEEEEE
Confidence 99864 3344433 334555 556644
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.17 Score=42.10 Aligned_cols=85 Identities=11% Similarity=0.164 Sum_probs=54.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~ 84 (272)
+.+++-|.|. |-+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+ ....++.++... ++.+
T Consensus 25 ~~k~vlITGasggiG~~la~~L~~~G~----~V~~~-~r~~~~~~~~~~~-------l~~-~~~~~~~~~~~Dl~~~~~~ 91 (302)
T 1w6u_A 25 QGKVAFITGGGTGLGKGMTTLLSSLGA----QCVIA-SRKMDVLKATAEQ-------ISS-QTGNKVHAIQCDVRDPDMV 91 (302)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH-HHSSCEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHH-hcCCceEEEEeCCCCHHHH
Confidence 4467777765 9999999999999999 99999 9998776554321 000 002344444432 3456
Q ss_pred HHHHHHhchhcCCCCEEEEEcC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~ 106 (272)
.++++++...+.+=.++|++.+
T Consensus 92 ~~~~~~~~~~~g~id~li~~Ag 113 (302)
T 1w6u_A 92 QNTVSELIKVAGHPNIVINNAA 113 (302)
T ss_dssp HHHHHHHHHHTCSCSEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 6666666544434457777643
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.051 Score=44.20 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=53.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhcc-CCEEEEeeC---ccc
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY-SDVVVFSVK---PQV 83 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~-aDivil~v~---~~~ 83 (272)
+.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ..+.... ..+.++.+. .+.
T Consensus 6 ~~k~~lVTGas~GIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~Dv~~~~~ 73 (250)
T 3nyw_A 6 QKGLAIITGASQGIGAVIAAGLATDGY----RVVLI-ARSKQNLEKVHDE-------IMRSNKHVQEPIVLPLDITDCTK 73 (250)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHHTC----EEEEE-ESCHHHHHHHHHH-------HHHHCTTSCCCEEEECCTTCHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHHhccccCcceEEeccCCCHHH
Confidence 4456666665 9999999999999999 99999 9999887665431 0110011 344444443 345
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
+.++++++...+.+=.++|+..
T Consensus 74 v~~~~~~~~~~~g~iD~lvnnA 95 (250)
T 3nyw_A 74 ADTEIKDIHQKYGAVDILVNAA 95 (250)
T ss_dssp HHHHHHHHHHHHCCEEEEEECC
T ss_pred HHHHHHHHHHhcCCCCEEEECC
Confidence 6666766655443334677653
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.19 Score=42.37 Aligned_cols=67 Identities=22% Similarity=0.268 Sum_probs=51.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCC-----HHHHHHHH----HcC--ceeecCchhhhccCCEE
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFE----SIG--VKVLSDNNAVVEYSDVV 75 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~-----~~~~~~l~----~~g--~~~~~~~~~~~~~aDiv 75 (272)
.+..||+|+|- +++..+++..+.+-|. +|++. .+. ++-.+.+. +.| +.++.++.++++++|+|
T Consensus 153 l~gl~va~vGD~~rva~Sl~~~~~~~g~----~v~~~-~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvv 227 (315)
T 1pvv_A 153 IKGVKVVYVGDGNNVAHSLMIAGTKLGA----DVVVA-TPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVI 227 (315)
T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHTTC----EEEEE-CCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEE
T ss_pred cCCcEEEEECCCcchHHHHHHHHHHCCC----EEEEE-CCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEE
Confidence 35689999998 8999999999999998 99888 542 22222222 356 55688999999999999
Q ss_pred EEee
Q 024121 76 VFSV 79 (272)
Q Consensus 76 il~v 79 (272)
..-+
T Consensus 228 y~~~ 231 (315)
T 1pvv_A 228 YTDV 231 (315)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9865
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.13 Score=42.84 Aligned_cols=89 Identities=12% Similarity=0.201 Sum_probs=55.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~ 84 (272)
+.++|-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. +. ..... ....++.++... ++.+
T Consensus 17 ~~k~vlVTGasggIG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-l~--~~~~~-~~~~~~~~~~~D~~~~~~v 87 (303)
T 1yxm_A 17 QGQVAIVTGGATGIGKAIVKELLELGS----NVVIA-SRKLERLKSAADE-LQ--ANLPP-TKQARVIPIQCNIRNEEEV 87 (303)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-HH--HTSCT-TCCCCEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-HH--hhccc-cCCccEEEEecCCCCHHHH
Confidence 3466777765 9999999999999999 99999 9998776654331 00 00000 012345555443 3456
Q ss_pred HHHHHHhchhcCCCCEEEEEcC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~ 106 (272)
..+++++...+.+=.++|++.+
T Consensus 88 ~~~~~~~~~~~g~id~li~~Ag 109 (303)
T 1yxm_A 88 NNLVKSTLDTFGKINFLVNNGG 109 (303)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 6666666554444457787644
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.42 E-value=0.16 Score=43.76 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=59.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecC-------chhhhc-----cCCEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD-------NNAVVE-----YSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~-------~~~~~~-----~aDivi 76 (272)
...+|.|+|+|.+|...++.+...|. .+|++. ++++++.+.+++.|+...-+ ..+.+. ..|+||
T Consensus 191 ~g~~VlV~GaG~vG~~a~qla~~~Ga---~~Vi~~-~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vi 266 (374)
T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKAAGA---ARIIGV-DINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSF 266 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC---CeEEEE-cCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEE
Confidence 45689999999999998888777775 258888 99999988888788642211 112121 479999
Q ss_pred EeeCc-ccHHHHHHHhchhcCCC-CEEEEE
Q 024121 77 FSVKP-QVVKDVAMQIRPLLSRK-KLLVSV 104 (272)
Q Consensus 77 l~v~~-~~~~~v~~~l~~~l~~~-~~iis~ 104 (272)
-|+.. ..+...++ .++++ ..++.+
T Consensus 267 d~~g~~~~~~~~~~----~l~~~~G~iv~~ 292 (374)
T 2jhf_A 267 EVIGRLDTMVTALS----CCQEAYGVSVIV 292 (374)
T ss_dssp ECSCCHHHHHHHHH----HBCTTTCEEEEC
T ss_pred ECCCCHHHHHHHHH----HhhcCCcEEEEe
Confidence 99864 34444443 34555 556644
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.14 Score=41.65 Aligned_cols=86 Identities=21% Similarity=0.237 Sum_probs=54.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---ccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~ 83 (272)
++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ..+ ....++.++... ++.
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------l~~-~~~~~~~~~~~D~~~~~~ 71 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEGA----HIVLV-ARQVDRLHEAARS-------LKE-KFGVRVLEVAVDVATPEG 71 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH-HHCCCEEEEECCTTSHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHH-------HHH-hcCCceEEEEcCCCCHHH
Confidence 34566777765 9999999999999999 99999 9998776654321 000 002344444432 345
Q ss_pred HHHHHHHhchhcCCCCEEEEEcC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+.++++++...+.+=.++|++.+
T Consensus 72 ~~~~~~~~~~~~g~id~lv~~Ag 94 (263)
T 3ai3_A 72 VDAVVESVRSSFGGADILVNNAG 94 (263)
T ss_dssp HHHHHHHHHHHHSSCSEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666554444457777643
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.046 Score=46.69 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=60.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHHcCceeecCch---h---hhc---cCCEEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNN---A---VVE---YSDVVVF 77 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~---~---~~~---~aDivil 77 (272)
...+|.|+|+|.+|...++.+... |. +|++. ++++++.+.+++.|+...-+.. + .+. ..|+||-
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid 244 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNI----TIVGI-SRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAID 244 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTC----EEEEE-CSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCC----EEEEE-eCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEE
Confidence 457899999999999888877777 88 89999 9999998888877764322211 1 111 5799999
Q ss_pred eeCcc-cHHHHHHHhchhcCCCCEEEEE
Q 024121 78 SVKPQ-VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 78 ~v~~~-~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|+... .+...++- ++++..++.+
T Consensus 245 ~~g~~~~~~~~~~~----l~~~G~iv~~ 268 (344)
T 2h6e_A 245 LVGTEETTYNLGKL----LAQEGAIILV 268 (344)
T ss_dssp SSCCHHHHHHHHHH----EEEEEEEEEC
T ss_pred CCCChHHHHHHHHH----hhcCCEEEEe
Confidence 98654 44444433 3454555543
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.016 Score=49.28 Aligned_cols=61 Identities=10% Similarity=0.120 Sum_probs=43.8
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-e------cCchhhhccCCEEEEee
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-L------SDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~------~~~~~~~~~aDivil~v 79 (272)
.+.|+|.|.|. |-+|+.++..|++.|+ +|++. +|++++ .++.. . .+..++++++|+||-+.
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~----~V~~~-~r~~~~------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A 85 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGR----TVRGF-DLRPSG------TGGEEVVGSLEDGQALSDAIMGVSAVLHLG 85 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTC----CEEEE-ESSCCS------SCCSEEESCTTCHHHHHHHHTTCSEEEECC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCC----EEEEE-eCCCCC------CCccEEecCcCCHHHHHHHHhCCCEEEECC
Confidence 34578999987 9999999999999999 99999 887654 22221 1 12345677899999775
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.036 Score=47.24 Aligned_cols=87 Identities=13% Similarity=0.151 Sum_probs=59.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-c----Cchhhh----ccCCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S----DNNAVV----EYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~----~~~~~~----~~aDivil~v 79 (272)
...+|.|+|+|.+|...++.+...|. +|++. ++++++.+.+++.|+... + +..+.+ ...|+||.++
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~ 240 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARAMGL----RVAAV-DIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTA 240 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeC
Confidence 45689999999999999988888898 99999 999999988888886422 1 111112 2578888887
Q ss_pred C-cccHHHHHHHhchhcCCCCEEEEE
Q 024121 80 K-PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 80 ~-~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
. ++.+...+.- ++++..++.+
T Consensus 241 g~~~~~~~~~~~----l~~~G~iv~~ 262 (340)
T 3s2e_A 241 VSPKAFSQAIGM----VRRGGTIALN 262 (340)
T ss_dssp CCHHHHHHHHHH----EEEEEEEEEC
T ss_pred CCHHHHHHHHHH----hccCCEEEEe
Confidence 5 3334444433 4455555543
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.043 Score=44.75 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=54.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~ 84 (272)
+.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|+.++.+.+.+. ..+ ...++.++.+. ++.+
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~--~~~~~~~~~~Dv~d~~~v 76 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKAGA----SVVVT-DLKSEGAEAVAAA-------IRQ--AGGKAIGLECNVTDEQHR 76 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHHTC----EEEEE-ESSHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHh--cCCcEEEEECCCCCHHHH
Confidence 3455656654 9999999999999999 99999 9998877655431 000 12344444442 3456
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
+++++++...+.+=.++|+..
T Consensus 77 ~~~~~~~~~~~g~id~lv~nA 97 (256)
T 3gaf_A 77 EAVIKAALDQFGKITVLVNNA 97 (256)
T ss_dssp HHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHcCCCCEEEECC
Confidence 677776655554445777764
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.17 Score=43.71 Aligned_cols=88 Identities=16% Similarity=0.087 Sum_probs=58.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecC-------chhhhc-----cCCEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD-------NNAVVE-----YSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~-------~~~~~~-----~aDivi 76 (272)
...+|.|+|+|.+|...++.+...|. .+|++. ++++++.+.+++.|+...-+ ..+.+. ..|+||
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga---~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvi 270 (376)
T 1e3i_A 195 PGSTCAVFGLGCVGLSAIIGCKIAGA---SRIIAI-DINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSL 270 (376)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC---CeEEEE-cCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEE
Confidence 35689999999999988887777775 258888 99999988888888642211 112121 479999
Q ss_pred EeeCc-ccHHHHHHHhchhcCCC-CEEEEE
Q 024121 77 FSVKP-QVVKDVAMQIRPLLSRK-KLLVSV 104 (272)
Q Consensus 77 l~v~~-~~~~~v~~~l~~~l~~~-~~iis~ 104 (272)
-|+.. ..+...+ ..++++ ..++.+
T Consensus 271 d~~G~~~~~~~~~----~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 271 DCAGTAQTLKAAV----DCTVLGWGSCTVV 296 (376)
T ss_dssp ESSCCHHHHHHHH----HTBCTTTCEEEEC
T ss_pred ECCCCHHHHHHHH----HHhhcCCCEEEEE
Confidence 98864 3344433 334555 555543
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.014 Score=46.95 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=46.9
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-e------cCchhhhccCCEEEEeeC
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-L------SDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~------~~~~~~~~~aDivil~v~ 80 (272)
+.|+|.|.| +|.+|+++++.|++.|+. .+|++. +|++++.+.+...++.. . .+..+++++.|+||-+..
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~--~~V~~~-~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag 93 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQGLF--SKVTLI-GRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLG 93 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCC--SEEEEE-ESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCCCC--CEEEEE-EcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCC
Confidence 457899998 599999999999999861 268888 88876543222222221 1 223455668899998874
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.1 Score=42.17 Aligned_cols=82 Identities=20% Similarity=0.216 Sum_probs=55.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Cccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~ 83 (272)
++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+++.+. . ..++.++.+ .++.
T Consensus 4 l~gk~vlVTGas~gIG~a~a~~l~~~G~----~V~~~-~r~~~~~~~~~~~----------~--~~~~~~~~~Dv~~~~~ 66 (247)
T 3rwb_A 4 LAGKTALVTGAAQGIGKAIAARLAADGA----TVIVS-DINAEGAKAAAAS----------I--GKKARAIAADISDPGS 66 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHH----------H--CTTEEECCCCTTCHHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH----------h--CCceEEEEcCCCCHHH
Confidence 35567777765 8999999999999999 99999 9999887665431 0 123333332 2345
Q ss_pred HHHHHHHhchhcCCCCEEEEEcC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
++++++++...+.+=.++|+..+
T Consensus 67 v~~~~~~~~~~~g~id~lv~nAg 89 (247)
T 3rwb_A 67 VKALFAEIQALTGGIDILVNNAS 89 (247)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHHHCCCCCEEEECCC
Confidence 67777776655544457777643
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.11 Score=42.19 Aligned_cols=81 Identities=14% Similarity=0.032 Sum_probs=53.9
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Cccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~ 83 (272)
++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. + ..++.++.. .++.
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~-----------~~~~~~~~~D~~~~~~ 65 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGA----RVVLA-DVLDEEGAATARE-L-----------GDAARYQHLDVTIEED 65 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHT-T-----------GGGEEEEECCTTCHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-h-----------CCceeEEEecCCCHHH
Confidence 35577878876 9999999999999999 99999 9998877665431 0 112333332 2345
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
++++++++...+.+=.++|+..
T Consensus 66 ~~~~~~~~~~~~g~iD~lv~nA 87 (254)
T 1hdc_A 66 WQRVVAYAREEFGSVDGLVNNA 87 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 6666766655444445777654
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.1 Score=43.00 Aligned_cols=85 Identities=11% Similarity=0.193 Sum_probs=52.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~ 84 (272)
+.+++-|.|. |-+|.++++.|++.|+ +|++. +|++++.+.+.+. ..+.-....+.++... ++.+
T Consensus 31 ~~k~vlVTGasggIG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~Dl~~~~~v 98 (279)
T 1xg5_A 31 RDRLALVTGASGGIGAAVARALVQQGL----KVVGC-ARTVGNIEELAAE-------CKSAGYPGTLIPYRCDLSNEEDI 98 (279)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHHTTCSSEEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-ECChHHHHHHHHH-------HHhcCCCceEEEEEecCCCHHHH
Confidence 3456777755 9999999999999999 99999 9998776654331 0000001223333332 3456
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
.++++++...+.+=.++|++.
T Consensus 99 ~~~~~~~~~~~g~iD~vi~~A 119 (279)
T 1xg5_A 99 LSMFSAIRSQHSGVDICINNA 119 (279)
T ss_dssp HHHHHHHHHHHCCCSEEEECC
T ss_pred HHHHHHHHHhCCCCCEEEECC
Confidence 666666554443435777654
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.11 Score=42.59 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=53.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~ 84 (272)
+.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+++.+. + . .++.++... ++.+
T Consensus 5 ~~k~vlITGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~----------~-~~~~~~~~D~~~~~~v 67 (263)
T 2a4k_A 5 SGKTILVTGAASGIGRAALDLFAREGA----SLVAV-DREERLLAEAVAA-L----------E-AEAIAVVADVSDPKAV 67 (263)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHT-C----------C-SSEEEEECCTTSHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-h----------c-CceEEEEcCCCCHHHH
Confidence 4566777765 9999999999999999 99999 9998877665431 0 0 233333332 3456
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
+++++++...+.+=.++|++.
T Consensus 68 ~~~~~~~~~~~g~iD~lvnnA 88 (263)
T 2a4k_A 68 EAVFAEALEEFGRLHGVAHFA 88 (263)
T ss_dssp HHHHHHHHHHHSCCCEEEEGG
T ss_pred HHHHHHHHHHcCCCcEEEECC
Confidence 666666654444445777654
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.05 Score=46.18 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=39.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV 59 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~ 59 (272)
...++.|+|+ |.+|..+++.+...|. +|++. +|++++.+.+++.|.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~----~V~~~-~~~~~~~~~~~~~g~ 191 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGC----KVVGA-AGSDEKIAYLKQIGF 191 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTC
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHhcCC
Confidence 4578999998 9999999999999998 99999 999988887766664
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.013 Score=52.05 Aligned_cols=66 Identities=18% Similarity=0.122 Sum_probs=48.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH--HHHHHHcCceee-cC-chhhhccCCEEEEee
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--RDAFESIGVKVL-SD-NNAVVEYSDVVVFSV 79 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~--~~~l~~~g~~~~-~~-~~~~~~~aDivil~v 79 (272)
.+.+||.|||.|..|.+.++.|.+.|+ +|+++ |..... ...+. .|+.+. .. ..+.++.+|+|+++.
T Consensus 3 ~~~~~v~viG~G~~G~~~a~~l~~~G~----~v~~~-D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~ 72 (439)
T 2x5o_A 3 YQGKNVVIIGLGLTGLSCVDFFLARGV----TPRVM-DTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASP 72 (439)
T ss_dssp CTTCCEEEECCHHHHHHHHHHHHTTTC----CCEEE-ESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECT
T ss_pred CCCCEEEEEeecHHHHHHHHHHHhCCC----EEEEE-ECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCC
Confidence 356789999999999999999999999 99999 764322 13344 577663 22 345566899999874
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.023 Score=50.56 Aligned_cols=100 Identities=14% Similarity=0.199 Sum_probs=71.9
Q ss_pred CCCCeEEEEccc----------HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--cCceeecCchhhhccCCEE
Q 024121 8 AESFILGFIGAG----------KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKVLSDNNAVVEYSDVV 75 (272)
Q Consensus 8 ~~~~~IgiIG~G----------~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--~g~~~~~~~~~~~~~aDiv 75 (272)
...+||+|+|+- .=...++..|.+.|. +|.+| |.... +...+ .++..+.+..++++++|.|
T Consensus 320 ~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~----~v~~~-DP~~~--~~~~~~~~~~~~~~~~~~~~~~ad~v 392 (446)
T 4a7p_A 320 VRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGA----TVKAY-DPEGV--EQASKMLTDVEFVENPYAAADGADAL 392 (446)
T ss_dssp CTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSC----EEEEE-CSSCH--HHHGGGCSSCCBCSCHHHHHTTBSEE
T ss_pred CCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCC----EEEEE-CCCCC--HhHHHhcCCceEecChhHHhcCCCEE
Confidence 456899999986 557789999999999 99999 87642 22222 2666677888889999999
Q ss_pred EEeeCcccHHHH-HHHhchhcCCCCEEEEEcCCCCHHHHHH
Q 024121 76 VFSVKPQVVKDV-AMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (272)
Q Consensus 76 il~v~~~~~~~v-~~~l~~~l~~~~~iis~~~~~~~~~l~~ 115 (272)
++++..+.++++ ++.+...+ ...+|+|.-+-++.+.+++
T Consensus 393 vi~t~~~~f~~~d~~~~~~~~-~~~~i~D~r~~~~~~~~~~ 432 (446)
T 4a7p_A 393 VIVTEWDAFRALDLTRIKNSL-KSPVLVDLRNIYPPAELER 432 (446)
T ss_dssp EECSCCTTTTSCCHHHHHTTB-SSCBEECSSCCSCHHHHHH
T ss_pred EEeeCCHHhhcCCHHHHHHhc-CCCEEEECCCCCCHHHHHh
Confidence 999977655432 23344434 3468898877777776654
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.064 Score=45.89 Aligned_cols=88 Identities=13% Similarity=0.056 Sum_probs=59.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecC-----chhhh------ccCCEEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD-----NNAVV------EYSDVVVF 77 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~-----~~~~~------~~aDivil 77 (272)
...+|.|+|+|.+|...++.+...|. .+|++. ++++++.+.+++.|+...-+ ..+.+ ...|+||-
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga---~~Vi~~-~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid 242 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGA---YPVIVS-EPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLE 242 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTC---CSEEEE-CSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEE
Confidence 45689999999999999988887775 268889 99999888887777642211 11111 14799999
Q ss_pred eeCc-ccHHHHHHHhchhcCCCCEEEEE
Q 024121 78 SVKP-QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 78 ~v~~-~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|+.. ..+...++- ++++..++.+
T Consensus 243 ~~g~~~~~~~~~~~----l~~~G~iv~~ 266 (348)
T 2d8a_A 243 FSGAPKALEQGLQA----VTPAGRVSLL 266 (348)
T ss_dssp CSCCHHHHHHHHHH----EEEEEEEEEC
T ss_pred CCCCHHHHHHHHHH----HhcCCEEEEE
Confidence 8864 444444433 3445556644
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.19 Score=43.28 Aligned_cols=88 Identities=16% Similarity=0.173 Sum_probs=59.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecC-------chhhhc-----cCCEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD-------NNAVVE-----YSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~-------~~~~~~-----~aDivi 76 (272)
...+|.|+|+|.+|...++.+...|. .+|++. ++++++.+.+++.|+...-+ ..+.+. ..|+||
T Consensus 192 ~g~~VlV~GaG~vG~~a~qla~~~Ga---~~Vi~~-~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vi 267 (374)
T 1cdo_A 192 PGSTCAVFGLGAVGLAAVMGCHSAGA---KRIIAV-DLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSL 267 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEE
Confidence 35689999999999998887777775 258888 99999988888888642211 112221 479999
Q ss_pred EeeCc-ccHHHHHHHhchhcCCC-CEEEEE
Q 024121 77 FSVKP-QVVKDVAMQIRPLLSRK-KLLVSV 104 (272)
Q Consensus 77 l~v~~-~~~~~v~~~l~~~l~~~-~~iis~ 104 (272)
-++.. ..+...+ ..++++ ..++.+
T Consensus 268 d~~g~~~~~~~~~----~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 268 ECVGNVGVMRNAL----ESCLKGWGVSVLV 293 (374)
T ss_dssp ECSCCHHHHHHHH----HTBCTTTCEEEEC
T ss_pred ECCCCHHHHHHHH----HHhhcCCcEEEEE
Confidence 98864 3344333 334555 556544
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.057 Score=43.77 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=53.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~~ 85 (272)
.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ..+ ...++.++... ++.++
T Consensus 9 ~k~vlITGas~giG~~~a~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~~~~~~~ 74 (253)
T 3qiv_A 9 NKVGIVTGSGGGIGQAYAEALAREGA----AVVVA-DINAEAAEAVAKQ-------IVA--DGGTAISVAVDVSDPESAK 74 (253)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCEEEEEECCTTSHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHH
Confidence 456667765 9999999999999999 99999 9998877665431 000 12233344432 34566
Q ss_pred HHHHHhchhcCCCCEEEEEc
Q 024121 86 DVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~ 105 (272)
++++++...+.+=.++|+..
T Consensus 75 ~~~~~~~~~~g~id~li~~A 94 (253)
T 3qiv_A 75 AMADRTLAEFGGIDYLVNNA 94 (253)
T ss_dssp HHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 77776655544445777764
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.018 Score=49.07 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=44.9
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHH--HHHHHHH---cCceee-cC------chhhhccCCE
Q 024121 10 SFILGFIG-AGKMAESIAKGVAKS--GVLPPDRICTAVHSNLK--RRDAFES---IGVKVL-SD------NNAVVEYSDV 74 (272)
Q Consensus 10 ~~~IgiIG-~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~--~~~~l~~---~g~~~~-~~------~~~~~~~aDi 74 (272)
+|+|.|.| +|-+|+.++..|++. |+ +|++. +|++. ..+.+.. .++... .| ..++++++|+
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 78 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDV----HVTVL-DKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADA 78 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTC----EEEEE-ECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSE
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCC----EEEEE-eCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCE
Confidence 57899998 599999999999998 88 99998 88642 1111221 233221 12 2355678899
Q ss_pred EEEeeC
Q 024121 75 VVFSVK 80 (272)
Q Consensus 75 vil~v~ 80 (272)
||-+..
T Consensus 79 vih~A~ 84 (348)
T 1oc2_A 79 IVHYAA 84 (348)
T ss_dssp EEECCS
T ss_pred EEECCc
Confidence 998863
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.05 Score=44.99 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=54.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~~ 85 (272)
.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ..+ ...++.++.+. ++.++
T Consensus 32 gk~~lVTGas~GIG~aia~~la~~G~----~V~~~-~r~~~~~~~~~~~-------~~~--~~~~~~~~~~Dl~d~~~v~ 97 (276)
T 3r1i_A 32 GKRALITGASTGIGKKVALAYAEAGA----QVAVA-ARHSDALQVVADE-------IAG--VGGKALPIRCDVTQPDQVR 97 (276)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESSGGGGHHHHHH-------HHH--TTCCCEEEECCTTCHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHh--cCCeEEEEEcCCCCHHHHH
Confidence 356666665 9999999999999999 99999 9998877665431 001 12233444432 34567
Q ss_pred HHHHHhchhcCCCCEEEEEcC
Q 024121 86 DVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~ 106 (272)
++++++...+.+=.++|+..+
T Consensus 98 ~~~~~~~~~~g~iD~lvnnAg 118 (276)
T 3r1i_A 98 GMLDQMTGELGGIDIAVCNAG 118 (276)
T ss_dssp HHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 777776655544457777543
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.12 Score=41.57 Aligned_cols=82 Identities=11% Similarity=0.103 Sum_probs=53.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEee---Ccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v---~~~ 82 (272)
++.++|-|.|. |-+|.++++.|.+.|+ +|++. +|++++.+.+.+ .. ...++.++.. .++
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G~----~V~~~-~r~~~~~~~~~~~~~-----------~~~~~~~~~~D~~~~~ 67 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEGA----KVMIT-GRHSDVGEKAAKSVG-----------TPDQIQFFQHDSSDED 67 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHC-----------CTTTEEEEECCTTCHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHhh-----------ccCceEEEECCCCCHH
Confidence 35567777765 9999999999999999 99999 999877665433 11 0023333333 234
Q ss_pred cHHHHHHHhchhcCCCCEEEEEc
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
.+.++++++...+.+=.++|++.
T Consensus 68 ~~~~~~~~~~~~~~~id~li~~A 90 (251)
T 1zk4_A 68 GWTKLFDATEKAFGPVSTLVNNA 90 (251)
T ss_dssp HHHHHHHHHHHHHSSCCEEEECC
T ss_pred HHHHHHHHHHHHhCCCCEEEECC
Confidence 56666766655444445777764
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.067 Score=43.83 Aligned_cols=80 Identities=11% Similarity=0.067 Sum_probs=54.4
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHHH
Q 024121 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (272)
Q Consensus 12 ~IgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~~ 86 (272)
|+.+| |.+-||.++++.|.+.|. +|.+. +|++++.++..+. ..+ ...++..+.+ .++++++
T Consensus 10 KvalVTGas~GIG~aia~~la~~Ga----~Vvi~-~~~~~~~~~~~~~-------l~~--~g~~~~~~~~Dv~~~~~v~~ 75 (255)
T 4g81_D 10 KTALVTGSARGLGFAYAEGLAAAGA----RVILN-DIRATLLAESVDT-------LTR--KGYDAHGVAFDVTDELAIEA 75 (255)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC----EEEEC-CSCHHHHHHHHHH-------HHH--TTCCEEECCCCTTCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCcEEEEEeeCCCHHHHHH
Confidence 56677 568899999999999999 99999 9998877655430 000 1223333333 3456788
Q ss_pred HHHHhchhcCCCCEEEEEc
Q 024121 87 VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~ 105 (272)
+++++...+.+=.++|+..
T Consensus 76 ~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 76 AFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp HHHHHHHTTCCCCEEEECC
T ss_pred HHHHHHHHCCCCcEEEECC
Confidence 8888776655545778653
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.12 Score=42.42 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=52.8
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Cccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~ 83 (272)
++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+.- . .+.++.. .++.
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~~-----------~--~~~~~~~Dv~d~~~ 68 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGA----RVVIC-DKDESGGRALEQEL-----------P--GAVFILCDVTQEDD 68 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHC-----------T--TEEEEECCTTSHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHh-----------c--CCeEEEcCCCCHHH
Confidence 35567777765 9999999999999999 99999 99988776654310 0 1222222 2345
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
++++++++...+.+=.++|++.
T Consensus 69 v~~~~~~~~~~~g~iD~lv~nA 90 (270)
T 1yde_A 69 VKTLVSETIRRFGRLDCVVNNA 90 (270)
T ss_dssp HHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 6666666554444445777664
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.039 Score=47.63 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=60.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH-HcCceee-c--Cc---hhhhccCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-SIGVKVL-S--DN---NAVVEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-~~g~~~~-~--~~---~~~~~~aDivil~v~~ 81 (272)
...+|.|+|+|.+|...++.+...|. +|++. ++++++.+.+. +.|+... + +. .+.....|+||-++..
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga----~Vi~~-~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~ 261 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGS----KVTVI-STSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSA 261 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCc
Confidence 35689999999999999998888898 99999 99988887776 5775422 1 11 1223467999999864
Q ss_pred c-cHHHHHHHhchhcCCCCEEEEE
Q 024121 82 Q-VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 ~-~~~~v~~~l~~~l~~~~~iis~ 104 (272)
. .+...++.+ +++..++.+
T Consensus 262 ~~~~~~~~~~l----~~~G~iv~~ 281 (366)
T 1yqd_A 262 VHPLLPLFGLL----KSHGKLILV 281 (366)
T ss_dssp CCCSHHHHHHE----EEEEEEEEC
T ss_pred HHHHHHHHHHH----hcCCEEEEE
Confidence 3 566655444 344455544
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.038 Score=47.64 Aligned_cols=72 Identities=19% Similarity=0.125 Sum_probs=51.2
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecC-----chhhh-----ccCCEEEE
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD-----NNAVV-----EYSDVVVF 77 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~-----~~~~~-----~~aDivil 77 (272)
...+|.|+| +|.+|...++.+...|. +|++. ++++++.+.+++.|+...-+ ..+.+ ...|+||-
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga----~Vi~~-~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid 237 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKC----HVIGT-CSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYE 237 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEE
Confidence 456899999 79999999999888998 99999 99998888887777542211 11111 14677777
Q ss_pred eeCcccHH
Q 024121 78 SVKPQVVK 85 (272)
Q Consensus 78 ~v~~~~~~ 85 (272)
|+....+.
T Consensus 238 ~~g~~~~~ 245 (362)
T 2c0c_A 238 SVGGAMFD 245 (362)
T ss_dssp CSCTHHHH
T ss_pred CCCHHHHH
Confidence 77543333
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.017 Score=49.04 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=46.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-cCceee-c---C----chhhhccCCEEEEee
Q 024121 11 FILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGVKVL-S---D----NNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~-~---~----~~~~~~~aDivil~v 79 (272)
|+|.|.|+ |-+|+.+++.|++. |+ +|++. +|++++.+.+.. .++... . + ..++++++|+||-+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A 75 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHY----EVYGL-DIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV 75 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTC----EEEEE-ESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCC----EEEEE-eCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcc
Confidence 58999987 99999999999998 88 99999 898766544332 233321 1 1 223556899999764
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.058 Score=43.80 Aligned_cols=83 Identities=16% Similarity=0.162 Sum_probs=52.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~ 84 (272)
+.++|-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ..+ ...++.++... ++.+
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------l~~--~~~~~~~~~~D~~~~~~~ 77 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAGA----RVIIA-DLDEAMATKAVED-------LRM--EGHDVSSVVMDVTNTESV 77 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHh--cCCceEEEEecCCCHHHH
Confidence 3466777765 9999999999999999 99999 9998766544320 000 12234344332 3356
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
+++++++.....+=.++|++.
T Consensus 78 ~~~~~~~~~~~~~id~vi~~A 98 (260)
T 3awd_A 78 QNAVRSVHEQEGRVDILVACA 98 (260)
T ss_dssp HHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHcCCCCEEEECC
Confidence 666666544443334677664
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.087 Score=46.72 Aligned_cols=89 Identities=15% Similarity=0.106 Sum_probs=61.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCch-------------------
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNN------------------- 66 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~------------------- 66 (272)
.....+|.|+|+ |.+|...++.+...|. +|++. .+++++.+.+++.|+...-+..
T Consensus 218 ~~~g~~VlV~GasG~iG~~a~qla~~~Ga----~vi~~-~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~ 292 (447)
T 4a0s_A 218 MKQGDIVLIWGASGGLGSYAIQFVKNGGG----IPVAV-VSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETG 292 (447)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHhcCCCEEEecccccccccccccccccchhh
Confidence 334578999998 9999999998888998 89888 8999999888887764221111
Q ss_pred ----h----h-hccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 67 ----A----V-VEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 67 ----~----~-~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
+ . -...|+||-|+....+...+ ..++++..++.+
T Consensus 293 ~~~~~~v~~~~g~g~Dvvid~~G~~~~~~~~----~~l~~~G~iv~~ 335 (447)
T 4a0s_A 293 RKLAKLVVEKAGREPDIVFEHTGRVTFGLSV----IVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHHHSSCCSEEEECSCHHHHHHHH----HHSCTTCEEEES
T ss_pred hHHHHHHHHHhCCCceEEEECCCchHHHHHH----HHHhcCCEEEEE
Confidence 1 0 12589999988654333333 345566666654
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.028 Score=46.88 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=53.6
Q ss_pred CCCCeEEEEcc---cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc
Q 024121 8 AESFILGFIGA---GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 8 ~~~~~IgiIG~---G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
.+..||+|+|- +++..+++..+.+-|. +|++. .+..-....+.+.|+.++.++.++++++|+|.. +-.+
T Consensus 144 l~gl~va~vGDl~~~rva~Sl~~~~~~~g~----~v~~~-~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~q 215 (291)
T 3d6n_B 144 VKDLRVLYVGDIKHSRVFRSGAPLLNMFGA----KIGVC-GPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRLQ 215 (291)
T ss_dssp CTTCEEEEESCCTTCHHHHHHHHHHHHTTC----EEEEE-SCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCCC
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHHHCCC----EEEEE-CCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCcc
Confidence 35689999997 8999999999999998 99988 543211112334578888999999999999999 7543
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.078 Score=47.44 Aligned_cols=98 Identities=10% Similarity=0.071 Sum_probs=66.6
Q ss_pred CCCCeEEEEccc----------HHHHHHHHHHHhCCCCCCCcEEEEeCCCH--HHHHHHH---------H--cCceeecC
Q 024121 8 AESFILGFIGAG----------KMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFE---------S--IGVKVLSD 64 (272)
Q Consensus 8 ~~~~~IgiIG~G----------~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~~l~---------~--~g~~~~~~ 64 (272)
.+.+||+|+|+- .-...++..|.+.|. +|.+| |..- +...... . .++..+.+
T Consensus 327 ~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~----~v~~~-DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (467)
T 2q3e_A 327 VTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGA----HLHIY-DPKVPREQIVVDLSHPGVSEDDQVSRLVTISKD 401 (467)
T ss_dssp CTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTC----EEEEE-CSSSCHHHHHHHHCC------CHHHHHEEECSS
T ss_pred cCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCC----EEEEE-cCccCHHHHhhhhccccccccccccCceeecCC
Confidence 356899999985 367789999999998 99999 8852 2221111 0 13555667
Q ss_pred chhhhccCCEEEEeeCcccHHHH-HHHhchhcCCCCEEEEEcCCCCH
Q 024121 65 NNAVVEYSDVVVFSVKPQVVKDV-AMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~~~~~v-~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
..++++++|.|++++..+.++++ ++.+...++...+|+|.-+-+..
T Consensus 402 ~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~~~~ 448 (467)
T 2q3e_A 402 PYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDG 448 (467)
T ss_dssp HHHHHTTCSEEEECSCCGGGGGSCHHHHHHHSCSSCEEEESSCTTTT
T ss_pred HHHHHhCCcEEEEecCChhhhcCCHHHHHHhcCCCCEEEeCCCcCCc
Confidence 78889999999999987766532 23444444444458887665554
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.02 Score=45.88 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=30.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
..|.|||+|.-|.+.|..|.++|+ +|+++ ++.+
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~----~V~v~-Ek~~ 35 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGH----QVHLF-DKSR 35 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC----CEEEE-ECCC
Confidence 459999999999999999999999 99999 8754
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.11 Score=41.44 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=50.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHHH
Q 024121 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~~ 86 (272)
++|-|.| .|-+|.++++.|.+.|+ +|++. +|++++.+.+.+. +. ++.++.. .++.+.+
T Consensus 6 k~vlVtGasggiG~~~a~~l~~~G~----~V~~~-~r~~~~~~~~~~~-----------~~--~~~~~~~D~~~~~~~~~ 67 (234)
T 2ehd_A 6 GAVLITGASRGIGEATARLLHAKGY----RVGLM-ARDEKRLQALAAE-----------LE--GALPLPGDVREEGDWAR 67 (234)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-----------ST--TCEEEECCTTCHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-----------hh--hceEEEecCCCHHHHHH
Confidence 4577775 59999999999999999 99999 9998776655431 00 1222222 2345666
Q ss_pred HHHHhchhcCCCCEEEEEcC
Q 024121 87 VAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~ 106 (272)
+++++...+.+=.++|++.+
T Consensus 68 ~~~~~~~~~~~id~li~~Ag 87 (234)
T 2ehd_A 68 AVAAMEEAFGELSALVNNAG 87 (234)
T ss_dssp HHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 66665544433347777643
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.11 Score=44.86 Aligned_cols=87 Identities=14% Similarity=0.201 Sum_probs=58.2
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCc----hhhh-----ccCCEEEE
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN----NAVV-----EYSDVVVF 77 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~----~~~~-----~~aDivil 77 (272)
...+|.|+| +|.+|...++.+.. .|. +|++. ++++++.+.+++.|+...-+. .+.+ ...|+||-
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~----~Vi~~-~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid 245 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDL----TVIAT-ASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFS 245 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCS----EEEEE-CSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCC----EEEEE-eCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEE
Confidence 456799998 89999987776655 477 99999 999999988888886432221 1111 25788888
Q ss_pred eeCcc-cHHHHHHHhchhcCCCCEEEEE
Q 024121 78 SVKPQ-VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 78 ~v~~~-~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|+... .+...++ .++++..++.+
T Consensus 246 ~~g~~~~~~~~~~----~l~~~G~iv~~ 269 (363)
T 4dvj_A 246 TTHTDKHAAEIAD----LIAPQGRFCLI 269 (363)
T ss_dssp CSCHHHHHHHHHH----HSCTTCEEEEC
T ss_pred CCCchhhHHHHHH----HhcCCCEEEEE
Confidence 87643 3444443 34556666654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 272 | ||||
| d1yqga1 | 111 | a.100.1.10 (A:153-263) Pyrroline-5-carboxylate red | 7e-35 | |
| d2ahra1 | 104 | a.100.1.10 (A:153-256) Pyrroline-5-carboxylate red | 3e-33 | |
| d1yqga2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 1e-19 | |
| d2ahra2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 3e-16 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 9e-10 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 6e-08 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 3e-06 |
| >d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 111 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Score = 119 bits (300), Expect = 7e-35
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 168 DEKLFDAITGL--SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGK 225
DE+ ITG+ SGPAY+F ++AL + + G A L+ T GA ++ ++G+
Sbjct: 1 DEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGE 60
Query: 226 HPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 272
+L+ +V S GGTT + + + V A +RS+E+
Sbjct: 61 DFEKLQKNVTSKGGTTHEAVEAFRRHRVAEAISEGVCACVRRSQEME 107
|
| >d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 104 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Score = 114 bits (287), Expect = 3e-33
Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 170 KLFDAITGL--SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHP 227
K FD T L S PAYI+L IEALA GV G+P+ AL + +QTVL +AS + S + P
Sbjct: 1 KDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSP 60
Query: 228 GQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 271
D + SPGGTTIAG+ ELE+ G + +A+ +++ L
Sbjct: 61 HDFIDAICSPGGTTIAGLMELERLGLTATVSSAIDKTIDKAKSL 104
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Score = 81.1 bits (199), Expect = 1e-19
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 8/157 (5%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+ F+G G MA ++A G+ K G RI + ++R+ E S +
Sbjct: 3 VYFLGGGNMAAAVAGGLVKQG---GYRI-YIANRGAEKRERLEKELGVETSATLPELHSD 58
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRF-IRVMPNTPS 131
DV++ +VKPQ ++ IR L++SVAAG+ + L + G +R +RVMPNTP
Sbjct: 59 DVLILAVKPQDMEAACKNIRT---NGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPG 115
Query: 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168
+G + M +E D + ++ SVG D
Sbjct: 116 KIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWLD 152
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Score = 72.0 bits (175), Expect = 3e-16
Identities = 37/158 (23%), Positives = 79/158 (50%), Gaps = 9/158 (5%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+G IG GKMA +I KG+ ++ P + + S + ++ E + + + +++
Sbjct: 3 IGIIGVGKMASAIIKGLKQT----PHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQV 58
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS-RFIRVMPNTPS 131
D+V+ +KPQ+ + V + K+ ++S+AAG+ L+ L + G +R+MPN +
Sbjct: 59 DLVILGIKPQLFETVLKPLHF----KQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNA 114
Query: 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADE 169
+ +++T ++ ++E + L S G + E
Sbjct: 115 QILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISE 152
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 55.4 bits (133), Expect = 9e-10
Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 5/113 (4%)
Query: 55 ESIGVKVLSDNNAVVEYSDVVVFSV-KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDL 113
E +G+KV SD+ VE +D+V+ + K D+ + + ++ +
Sbjct: 125 EDVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACT-IPTTKF 183
Query: 114 QEWTGH--SRFIRVMPNTPSAVGEA-ATVMSLGGTATEEDGELIGKLFGSVGK 163
+ + + P V E V G A+EE + ++
Sbjct: 184 AKIFKDLGREDLNITSYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIARG 236
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 48.8 bits (115), Expect = 6e-08
Identities = 22/162 (13%), Positives = 50/162 (30%), Gaps = 12/162 (7%)
Query: 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESIGVKVLSDNNAVVE 70
+L F+G G + + + + + S ++ R + + E
Sbjct: 1 VLNFVGTGTLTRFFLECLKDRYEI------GYILSRSIDRARNLAEVYGGKAATLEKHPE 54
Query: 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTP 130
+ VV V + +K VA + +LV + + + ++ S ++
Sbjct: 55 LNGVVFVIVPDRYIKTVANHLNL---GDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSL 111
Query: 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGK--IWRADEK 170
E + G E ++ K+ + EK
Sbjct: 112 EKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPSEK 153
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 43.7 bits (102), Expect = 3e-06
Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 6/137 (4%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+GFIG G++A+++A + GV + V V + V
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGV-----EVVTSLEGRSPSTIERARTVGVTETSEEDVYSC 57
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW-TGHSRFIRVMPNTPS 131
VV+ +V P V A + + + ++ + ++ + +
Sbjct: 58 PVVISAVTPGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKGGFVDAAIMGSVR 117
Query: 132 AVGEAATVMSLGGTATE 148
G +++ G A E
Sbjct: 118 RKGADIRIIASGRDAEE 134
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 272 | |||
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.97 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.96 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.9 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.9 | |
| d1yqga1 | 111 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.88 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.86 | |
| d2ahra1 | 104 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.86 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.86 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.86 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.83 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.82 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.75 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.75 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.74 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.73 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.71 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.69 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.64 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.62 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.59 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.28 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.19 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 99.15 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 99.02 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.9 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.88 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.87 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.84 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.83 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.81 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.79 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.78 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.76 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.71 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.69 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.68 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.68 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.68 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.67 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.66 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.66 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.66 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.66 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.65 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.63 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.62 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.62 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 98.6 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.57 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.55 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.52 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.49 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 98.49 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.48 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.48 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 98.41 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.4 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.39 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.35 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 98.33 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 98.31 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 98.29 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 98.28 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 98.27 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.25 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 98.25 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 98.21 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.2 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 98.17 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 98.16 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 98.15 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 98.14 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 98.12 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.09 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 98.09 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 98.07 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 98.07 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.05 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 98.05 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 98.04 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 98.04 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.01 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 98.0 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.99 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 97.99 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.97 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.9 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 97.88 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.86 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.83 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.83 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.73 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.71 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 97.68 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.65 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.61 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 97.61 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.55 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.51 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.47 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.46 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 97.44 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.38 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.38 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.36 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.34 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.3 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.27 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.2 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 97.18 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 97.11 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 97.09 | |
| d2f1ka1 | 114 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.05 | |
| d2g5ca1 | 110 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.05 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.99 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.98 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.97 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.88 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.83 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.81 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 96.8 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.8 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.76 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.7 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.69 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 96.64 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 96.63 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 96.63 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.62 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.61 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 96.6 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.59 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.58 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.53 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.49 | |
| d2pv7a1 | 128 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.48 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.44 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 96.43 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.43 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.42 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 96.39 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 96.39 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 96.29 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 96.22 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 96.14 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 96.13 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 96.1 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 96.09 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 96.04 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 96.02 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 95.97 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 95.92 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.92 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.9 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 95.87 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 95.86 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 95.86 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 95.85 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.84 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 95.83 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 95.82 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 95.81 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 95.81 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.8 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 95.79 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.76 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 95.76 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 95.73 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 95.7 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 95.7 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 95.7 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.65 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.61 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 95.6 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.56 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 95.55 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 95.55 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 95.53 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 95.53 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 95.5 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 95.48 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.48 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 95.44 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 95.38 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.35 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.26 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 95.24 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 95.13 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 95.06 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 95.03 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 95.0 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 94.93 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 94.9 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.89 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 94.89 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 94.82 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 94.8 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 94.72 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 94.72 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 94.71 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 94.71 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 94.69 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.69 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 94.65 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 94.63 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 94.61 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 94.56 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 94.53 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 94.49 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 94.46 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 94.45 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 94.43 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 94.43 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 94.35 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 94.33 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 94.33 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 94.28 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 94.25 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 94.23 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 94.23 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 94.21 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 94.17 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 94.16 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 94.11 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 94.09 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.08 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.06 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 94.02 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 94.0 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 93.99 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 93.93 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 93.84 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 93.84 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 93.82 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 93.76 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 93.74 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 93.72 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 93.71 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 93.68 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 93.67 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 93.67 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 93.61 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 93.28 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 93.19 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 93.16 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 93.11 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 93.08 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 92.91 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 92.9 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 92.9 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 92.87 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 92.79 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 92.79 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 92.73 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 92.72 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 92.64 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 92.63 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 92.56 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 92.55 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 92.45 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 92.42 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 92.41 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 92.39 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 92.36 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 92.34 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 92.32 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 92.09 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 92.03 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 92.0 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 92.0 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 91.86 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 91.83 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 91.75 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 91.71 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 91.62 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 91.55 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 91.46 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 91.29 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 91.28 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 91.27 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 91.25 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 91.22 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 91.17 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 91.0 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 90.96 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 90.95 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 90.9 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 90.78 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 90.76 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 90.69 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 90.63 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 90.36 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 90.33 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 90.31 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 90.3 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 90.12 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 90.0 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 89.87 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 89.76 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.76 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 89.55 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 89.48 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 89.37 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 89.37 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 89.33 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 89.27 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 89.22 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 88.93 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 88.91 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 88.84 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 88.59 | |
| d1q7ra_ | 202 | Hypothetical protein YaaE {Bacillus stearothermoph | 88.53 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 88.5 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 88.4 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 88.07 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 87.75 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 87.62 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 87.44 | |
| d1rq2a1 | 198 | Cell-division protein FtsZ {Mycobacterium tubercul | 87.41 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 87.28 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 87.07 | |
| d1l7da2 | 194 | Nicotinamide nucleotide transhydrogenase dI compon | 86.8 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 86.61 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 86.46 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 86.39 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 86.29 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 85.94 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 85.84 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 85.81 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 85.44 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 85.38 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 85.36 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 85.29 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 85.07 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 84.95 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 84.91 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 84.71 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 84.68 | |
| d1gq2a1 | 298 | Mitochondrial NAD(P)-dependent malic enzyme {Domes | 84.66 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 84.35 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 84.32 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 84.18 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 84.12 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 84.01 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 83.93 | |
| d1ofua1 | 198 | Cell-division protein FtsZ {Pseudomonas aeruginosa | 83.9 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 83.34 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 83.17 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 82.75 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 82.53 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 82.1 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 81.96 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 81.78 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 81.25 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 81.03 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 80.94 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 80.86 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 80.7 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 80.61 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 80.35 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.19 |
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.97 E-value=1.4e-30 Score=199.42 Aligned_cols=150 Identities=25% Similarity=0.461 Sum_probs=137.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~ 89 (272)
|||||||+|+||++|+++|.++|+ ++++| +|++++.+++.+ .|+..+.+++++++++|+||+||+|++++++++
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~----~i~v~-~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavkp~~~~~vl~ 75 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPH----ELIIS-GSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQLFETVLK 75 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSC----EEEEE-CSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGGGHHHHHT
T ss_pred CEEEEEeccHHHHHHHHHHHhCCC----eEEEE-cChHHhHHhhccccceeeechhhhhhhccceeeeecchHhHHHHhh
Confidence 799999999999999999999999 99999 999999988866 788888899999999999999999999998886
Q ss_pred HhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEcC
Q 024121 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168 (272)
Q Consensus 90 ~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 168 (272)
. ++++++++|+.+|++.+.+++.++ +.+++|+|||.|..++.|.+.++.+...+++..+.++++|+.+|+.++++
T Consensus 76 ~----l~~~~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~ 151 (152)
T d2ahra2 76 P----LHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDIS 151 (152)
T ss_dssp T----SCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTEEEEECC
T ss_pred h----cccceeEecccccccHHHHHhhhcccccchhhccchhhhcCccceEEEeCCCCCHHHHHHHHHHHHhCCCEEEec
Confidence 5 457899999999999999999887 57899999999999999999999888889999999999999999987776
Q ss_pred c
Q 024121 169 E 169 (272)
Q Consensus 169 e 169 (272)
|
T Consensus 152 E 152 (152)
T d2ahra2 152 E 152 (152)
T ss_dssp G
T ss_pred C
Confidence 4
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.96 E-value=4.3e-29 Score=191.24 Aligned_cols=148 Identities=32% Similarity=0.538 Sum_probs=133.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
|||||||+|+||++|+++|+++| + +|++| +|++++.+++.+ .|+....+.++ +.++|+||+||||+++.+++
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~----~i~v~-~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavkP~~~~~v~ 74 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGY----RIYIA-NRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVKPQDMEAAC 74 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSC----EEEEE-CSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSCHHHHHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCC----cEEEE-eCChhHHHHhhhhccccccccccc-ccccceEEEecCHHHHHHhH
Confidence 79999999999999999999988 6 99999 999999999887 68888777655 67899999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEc
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRA 167 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 167 (272)
+++.+ .++++||+.+|++.+.+++.++ ..+++|+||+.|..+++|.+.++.+...+++..+.++++|+.+|+++++
T Consensus 75 ~~l~~---~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v 151 (152)
T d1yqga2 75 KNIRT---NGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWL 151 (152)
T ss_dssp TTCCC---TTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEEEEC
T ss_pred HHHhh---cccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence 88763 5789999999999999999987 4679999999999999999999988888899999999999999987654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.90 E-value=6.6e-23 Score=158.59 Aligned_cols=146 Identities=14% Similarity=0.193 Sum_probs=115.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc-eeecCchhhhccCCEEEEeeCcccHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV-KVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~-~~~~~~~~~~~~aDivil~v~~~~~~~v~~ 89 (272)
|||+|||+|+||++||++|.++|| +|++| ||++++++++++.|+ ....+..++++++|+||+|||++.++++++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~----~V~~~-d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~~~~~vl~ 75 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGH----YLIGV-SRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLE 75 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHHHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC----EEEEE-ECCchHHHHHHHhhccceeeeecccccccccccccCcHhhhhhhhh
Confidence 799999999999999999999999 99999 999999998888774 344556678899999999999999999999
Q ss_pred HhchhcCCCCEEEEEcCCCCHHH---HHHHhCCCCEEEEccCchh------h-----hcCCceEEEeCCCCCHHHHHHHH
Q 024121 90 QIRPLLSRKKLLVSVAAGVKLKD---LQEWTGHSRFIRVMPNTPS------A-----VGEAATVMSLGGTATEEDGELIG 155 (272)
Q Consensus 90 ~l~~~l~~~~~iis~~~~~~~~~---l~~~~~~~~~~~~~p~~~~------~-----~~~g~~~~~~~~~~~~~~~~~v~ 155 (272)
++.+.++++++|+++. +..... +.+..+ +++..||.... . ......++++....+++..+.++
T Consensus 76 ~l~~~l~~~~iv~~~~-s~~~~~~~~~~~~~~--~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~ 152 (165)
T d2f1ka2 76 KLIPHLSPTAIVTDVA-SVKTAIAEPASQLWS--GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLR 152 (165)
T ss_dssp HHGGGSCTTCEEEECC-SCCHHHHHHHHHHST--TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHH
T ss_pred hhhhhcccccceeecc-ccchHHHHHHHHhhc--ccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHH
Confidence 9999999999888764 444433 233333 56666664321 1 12334556777778999999999
Q ss_pred HHhhhcCCe
Q 024121 156 KLFGSVGKI 164 (272)
Q Consensus 156 ~ll~~~G~~ 164 (272)
++|+.+|..
T Consensus 153 ~l~~~lG~~ 161 (165)
T d2f1ka2 153 SVLEPLGVK 161 (165)
T ss_dssp HHHGGGTCE
T ss_pred HHHHHhCCE
Confidence 999999954
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.90 E-value=1e-23 Score=162.45 Aligned_cols=148 Identities=18% Similarity=0.233 Sum_probs=116.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccHHHHH-
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDVA- 88 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~~~v~- 88 (272)
|||||||+|+||++||++|+++|| +|++| ||++++.+.+.+.+...+.++.++++++|+||+||| ++++++++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~ 75 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGY----SLVVS-DRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVAL 75 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCC----eEEEE-eCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHh
Confidence 799999999999999999999999 99999 999999999999999999999999999999999997 55788887
Q ss_pred --HHhchhcCCCCEEEEEcCCCCHHH---HHHHhC--CCCEEEEc-cCchhhhcCCc-eEEEeCCCCCHHHHHHHHHHhh
Q 024121 89 --MQIRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRVM-PNTPSAVGEAA-TVMSLGGTATEEDGELIGKLFG 159 (272)
Q Consensus 89 --~~l~~~l~~~~~iis~~~~~~~~~---l~~~~~--~~~~~~~~-p~~~~~~~~g~-~~~~~~~~~~~~~~~~v~~ll~ 159 (272)
..+.+.++++++||++++ ++.+. +.+.+. +..++.+. ...|.....|. ++++.| +++.+++++++|+
T Consensus 76 ~~~~~~~~~~~g~iiid~sT-~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG---~~~~~~~~~~il~ 151 (161)
T d1vpda2 76 GENGIIEGAKPGTVLIDMSS-IAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGG---DKAIFDKYYDLMK 151 (161)
T ss_dssp STTCHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEES---CHHHHHHHHHHHH
T ss_pred CCcchhhccCCCCEEEECCC-CCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcC---CHHHHHHHHHHHH
Confidence 457778889999998754 55443 333332 34555432 12344444454 445554 7899999999999
Q ss_pred hcCC-eEEc
Q 024121 160 SVGK-IWRA 167 (272)
Q Consensus 160 ~~G~-~~~~ 167 (272)
.+|. .+++
T Consensus 152 ~~~~~i~~~ 160 (161)
T d1vpda2 152 AMAGSVVHT 160 (161)
T ss_dssp TTEEEEEEE
T ss_pred HhcCceEEC
Confidence 9995 4654
|
| >d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.88 E-value=2.2e-22 Score=143.53 Aligned_cols=105 Identities=30% Similarity=0.539 Sum_probs=101.4
Q ss_pred CcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHH
Q 024121 168 DEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245 (272)
Q Consensus 168 ~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l 245 (272)
+|+++|.+++++ ||+|++.+++++.+++.+.|++.+++.+++.+++.|+..++.+++.+|..++++|++|||+|++||
T Consensus 1 dE~~~d~~Tal~GSGPAy~~~~~ea~~~~~~~~Gl~~~~a~~lv~~~~~Gs~~ll~~s~~~~~~L~~~V~SpgGtT~agl 80 (111)
T d1yqga1 1 DEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSKGGTTHEAV 80 (111)
T ss_dssp STTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTCCTTSHHHHHH
T ss_pred CHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHhcccCcchhHHHHH
Confidence 477899999998 999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 246 HELEKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
+.|++++|+..|.++++++++|++||+
T Consensus 81 ~~l~~~~~~~~i~~ai~aA~~Rs~el~ 107 (111)
T d1yqga1 81 EAFRRHRVAEAISEGVCACVRRSQEME 107 (111)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999984
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=3.8e-23 Score=157.93 Aligned_cols=147 Identities=13% Similarity=0.100 Sum_probs=102.8
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHHHHhc
Q 024121 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (272)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~~l~ 92 (272)
|||||+|+||++|+.+|.+.++ .+.+| +|++++++++.+.+...+.++.++++++|+||+||||+++.+++.++.
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~----~~~v~-~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~i~~v~~~l~ 76 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYE----IGYIL-SRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIKTVANHLN 76 (153)
T ss_dssp CEEESCCHHHHHHHHTTC--------CCCEE-CSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTTHHHHHTTTC
T ss_pred EEEEeCcHHHHHHHHHHHhCCC----EEEEE-eCChhhhcchhhcccccccchhhhhccCcEEEEeccchhhhHHHhhhc
Confidence 7999999999999999876544 45689 999999999999665556788899999999999999999999998874
Q ss_pred hhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhh--cCCceEEEeCCCCCHHHHHHHHHHhhhcC-CeEEcC
Q 024121 93 PLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAV--GEAATVMSLGGTATEEDGELIGKLFGSVG-KIWRAD 168 (272)
Q Consensus 93 ~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~--~~g~~~~~~~~~~~~~~~~~v~~ll~~~G-~~~~~~ 168 (272)
.++++++|++++.+.+.++.... +.+.++.+++.+... ..+..+...+ +++.++.++++|+.+| ++++++
T Consensus 77 ---~~~~ivi~~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---d~~~~~~~~~l~~~lG~~~~~i~ 150 (153)
T d2i76a2 77 ---LGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSLEKALEMKDQIVFGLEG---DERGLPIVKKIAEEISGKYFVIP 150 (153)
T ss_dssp ---CSSCCEEECCSSSCGGGGCSSSEEEEEECSCC--CTTGGGCGGGCCEEECC---CTTTHHHHHHHHHHHCSCEEECC
T ss_pred ---ccceeeeecccchhhhhhhhhccccceeeeecccccchhhhccCcEEEEeC---CHHHHHHHHHHHHHHCCcEEEeC
Confidence 47899999998888776654322 111111112211111 1223333333 6788999999999999 568887
Q ss_pred cc
Q 024121 169 EK 170 (272)
Q Consensus 169 e~ 170 (272)
++
T Consensus 151 ~e 152 (153)
T d2i76a2 151 SE 152 (153)
T ss_dssp GG
T ss_pred CC
Confidence 65
|
| >d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.86 E-value=2.1e-21 Score=136.81 Aligned_cols=101 Identities=44% Similarity=0.711 Sum_probs=97.9
Q ss_pred cchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHHHHH
Q 024121 171 LFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL 248 (272)
Q Consensus 171 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l~~l 248 (272)
++|.+++++ ||+|++.+++++.+++.+.|++.+++.+++.+++.|+..++.+++.+|..++++|++|||+|++||+.|
T Consensus 2 ~~d~~TalsGSGPAf~~~~~ea~~~~~~~~Gl~~~~a~~l~~~t~~gs~~ll~~~~~~p~~l~~~V~SpgGtT~agl~~l 81 (104)
T d2ahra1 2 DFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLMEL 81 (104)
T ss_dssp GHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHCCTTSHHHHHHHHH
T ss_pred CcchHhHhccChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccCCChhHHHHHHHH
Confidence 578999998 999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHhhc
Q 024121 249 EKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
++++|+..|.++++++++|++||
T Consensus 82 e~~~~~~~i~~a~~aA~~Rs~el 104 (104)
T d2ahra1 82 ERLGLTATVSSAIDKTIDKAKSL 104 (104)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHC
T ss_pred HHCChHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999996
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.86 E-value=1.6e-21 Score=150.11 Aligned_cols=149 Identities=17% Similarity=0.250 Sum_probs=115.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v~ 88 (272)
|+||||||+|.||++||++|.++|| +|.+| ||++++.+.+.+.+.....++.+++.++|+|++|||+. +.++++
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~----~v~~~-d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~ 75 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGY----LLNVF-DLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLY 75 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCC----eEEEE-ECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHH
Confidence 5789999999999999999999999 99999 99999999999899888889999999999999999865 566776
Q ss_pred HH---hchhcCCCCEEEEEcCCCCHHH---HHHHhC--CCCEEEEc-cCchhhhcCCc-eEEEeCCCCCHHHHHHHHHHh
Q 024121 89 MQ---IRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRVM-PNTPSAVGEAA-TVMSLGGTATEEDGELIGKLF 158 (272)
Q Consensus 89 ~~---l~~~l~~~~~iis~~~~~~~~~---l~~~~~--~~~~~~~~-p~~~~~~~~g~-~~~~~~~~~~~~~~~~v~~ll 158 (272)
.. +.+.+.++++||+++ +++++. +.+.+. +.+++.+. -..|.....|. +++..| +++.+++++++|
T Consensus 76 ~~~~~~~~~l~~g~iiid~s-t~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG---~~~~~~~~~~il 151 (162)
T d3cuma2 76 LDDDGLLAHIAPGTLVLECS-TIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGG---DAEALEKARPLF 151 (162)
T ss_dssp HSTTCHHHHSCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEES---CHHHHHHHHHHH
T ss_pred hccccccccCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecC---CHHHHHHHHHHH
Confidence 43 667788999999875 455543 333332 34555431 13455555665 444444 788999999999
Q ss_pred hhcCC-eEEc
Q 024121 159 GSVGK-IWRA 167 (272)
Q Consensus 159 ~~~G~-~~~~ 167 (272)
+.+|+ .+++
T Consensus 152 ~~~~~~v~~~ 161 (162)
T d3cuma2 152 EAMGRNIFHA 161 (162)
T ss_dssp HHHEEEEEEE
T ss_pred HHHcCccEEC
Confidence 99995 4654
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.86 E-value=6.2e-21 Score=148.12 Aligned_cols=151 Identities=18% Similarity=0.241 Sum_probs=115.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc--eeecCchhh-hccCCEEEEeeCcccHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAV-VEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~--~~~~~~~~~-~~~aDivil~v~~~~~~~ 86 (272)
|++|+|||+|.||++||++|.+.|+ ..+|++| ||+++..+.+++.+. ....+..+. ..++|+||+|+|++.+.+
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~--~~~I~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~ 77 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGF--KGKIYGY-DINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFRE 77 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTC--CSEEEEE-CSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCC--CeEEEEE-ECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhh
Confidence 3579999999999999999999986 2268899 999999998888765 334444433 347999999999999999
Q ss_pred HHHHhchhcCCCCEEEEEcCCCC--HHHHHHHhCCCCEEEEccCc------hhh-----hcCCceEEEeCCCCCHHHHHH
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVK--LKDLQEWTGHSRFIRVMPNT------PSA-----VGEAATVMSLGGTATEEDGEL 153 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~--~~~l~~~~~~~~~~~~~p~~------~~~-----~~~g~~~~~~~~~~~~~~~~~ 153 (272)
++.++.++++++++++++++... .+.+.+.++ .++++.||.. +.. +.....++++....+++..+.
T Consensus 78 vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~-~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~~~ 156 (171)
T d2g5ca2 78 IAKKLSYILSEDATVTDQGSVKGKLVYDLENILG-KRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKL 156 (171)
T ss_dssp HHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG-GGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHH
T ss_pred hhhhhhccccccccccccccccHHHHHHHHHhhc-ccccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHHHH
Confidence 99999999999988888755332 244555555 4688888742 111 123345677777889999999
Q ss_pred HHHHhhhcCCe
Q 024121 154 IGKLFGSVGKI 164 (272)
Q Consensus 154 v~~ll~~~G~~ 164 (272)
++++|+.+|..
T Consensus 157 v~~~~~~lG~~ 167 (171)
T d2g5ca2 157 VKRVWEDVGGV 167 (171)
T ss_dssp HHHHHHHTTCE
T ss_pred HHHHHHHcCCE
Confidence 99999999954
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.83 E-value=1.4e-20 Score=146.80 Aligned_cols=146 Identities=15% Similarity=0.242 Sum_probs=110.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc--------eeecCchhhhccCCEEEEeeCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--------KVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~--------~~~~~~~~~~~~aDivil~v~~ 81 (272)
+.+|||||+|+||.+|+++|.++|| +|++| ||++++.+++.+.+. ....+..+.+.++|++++++++
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~----~V~v~-dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~ 76 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGF----VVCAF-NRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKA 76 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCT
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCc
Confidence 3579999999999999999999999 99999 999999999987532 2234455677899999999976
Q ss_pred -ccHHHHHHHhchhcCCCCEEEEEcCCCCHHH---HHHHhC--CCCEEEE-ccCchhhhcCCceEEEeCCCCCHHHHHHH
Q 024121 82 -QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELI 154 (272)
Q Consensus 82 -~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~---l~~~~~--~~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~~v 154 (272)
+.+.+++.++.+.++++++||++++ +.++. +.+.+. +..++.. +...|.....|.+++..| +++.++.+
T Consensus 77 ~~~v~~v~~~l~~~~~~g~iiid~sT-~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~~~~~gG---~~~~~~~~ 152 (176)
T d2pgda2 77 GQAVDNFIEKLVPLLDIGDIIIDGGN-SEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGG---NKEAWPHI 152 (176)
T ss_dssp THHHHHHHHHHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEE---CTTTHHHH
T ss_pred hHHHHHHHHHHHhccccCcEEEecCc-chhHHHHHHHHHHHhcCCceeccccccCcccccCCcEEEcCC---CHHHHHHH
Confidence 4688899999999999999998754 44433 333332 3445543 234444445566666554 67889999
Q ss_pred HHHhhhcCCe
Q 024121 155 GKLFGSVGKI 164 (272)
Q Consensus 155 ~~ll~~~G~~ 164 (272)
+++|+.++..
T Consensus 153 ~~il~~~~~k 162 (176)
T d2pgda2 153 KAIFQGIAAK 162 (176)
T ss_dssp HHHHHHHSCB
T ss_pred HHHHHHHhcc
Confidence 9999999854
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.82 E-value=3.3e-20 Score=141.22 Aligned_cols=146 Identities=17% Similarity=0.217 Sum_probs=107.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQ 90 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~~ 90 (272)
|||||||+|+||++|+++|.++|| +|++| ++++++...+...++.+..++.|+++++|+||+|||+++..+++.+
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~----~v~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~~ 75 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGV----EVVTS-LEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARR 75 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC----EEEEC-CTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHH
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCC----eEEEE-cCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHHHh
Confidence 799999999999999999999999 99999 8887776666665666677889999999999999999998888888
Q ss_pred hchhcCCCCEEEEEcCCCCH---HHHHHHhCCCCEEEEc-cCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCe-E
Q 024121 91 IRPLLSRKKLLVSVAAGVKL---KDLQEWTGHSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-W 165 (272)
Q Consensus 91 l~~~l~~~~~iis~~~~~~~---~~l~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~-~ 165 (272)
+.+.+ ++++|+++ +++. ..+++.+++..++... .+.|...+.+..+++.|+ +.+.++ .|+.+|.. .
T Consensus 76 ~~~~~--~~~~id~s-t~~p~~~~~l~~~~~~~~~~d~~v~g~~~~~~~~~~~~~~G~--~~~~~~----~l~~~g~~i~ 146 (152)
T d1i36a2 76 AGRHV--RGIYVDIN-NISPETVRMASSLIEKGGFVDAAIMGSVRRKGADIRIIASGR--DAEEFM----KLNRYGLNIE 146 (152)
T ss_dssp HHTTC--CSEEEECS-CCCHHHHHHHHHHCSSSEEEEEEECSCHHHHGGGCEEEEEST--THHHHH----GGGGGTCEEE
T ss_pred hcccC--CceeeccC-cCCHHHHHHHHHHHhccCCCcccccCCcccccCCcEEEEECC--CHHHHH----HHHHcCCeee
Confidence 77654 57888764 4443 4556666544454332 233444566777777764 333332 37888955 6
Q ss_pred EcCcc
Q 024121 166 RADEK 170 (272)
Q Consensus 166 ~~~e~ 170 (272)
+++++
T Consensus 147 ~~G~~ 151 (152)
T d1i36a2 147 VRGRE 151 (152)
T ss_dssp ECSSS
T ss_pred EcCCC
Confidence 66664
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=4.7e-17 Score=128.03 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=125.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------c------------------C
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I------------------G 58 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~------------------g 58 (272)
|..+||+|||+|.||+.||..++.+|+ +|.+| |++++.+++..+ . .
T Consensus 2 ~~IkkvaViGaG~mG~~iA~~~a~~G~----~V~l~-D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (192)
T d1f0ya2 2 IIVKHVTVIGGGLMGAGIAQVAAATGH----TVVLV-DQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 76 (192)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred ceeEEEEEECcCHHHHHHHHHHHhCCC----cEEEE-ECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhh
Confidence 466899999999999999999999999 99999 999976443221 1 1
Q ss_pred ceeecCchhhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcC
Q 024121 59 VKVLSDNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGE 135 (272)
Q Consensus 59 ~~~~~~~~~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~ 135 (272)
+..+.+..+++.+||+|+-|++-+ .-.+++.++.+..+++.++.|.++++++..+...+. ..++++.|+..|.....
T Consensus 77 i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~ 156 (192)
T d1f0ya2 77 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMK 156 (192)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCC
T ss_pred ccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCccc
Confidence 335566678899999999999865 346888999999999999999999999999988776 36899999877765433
Q ss_pred CceEEEeCCCCCHHHHHHHHHHhhhcCCe-EEc
Q 024121 136 AATVMSLGGTATEEDGELIGKLFGSVGKI-WRA 167 (272)
Q Consensus 136 g~~~~~~~~~~~~~~~~~v~~ll~~~G~~-~~~ 167 (272)
..-+++++.++++..+.+..+++.+|+. +.+
T Consensus 157 -lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v 188 (192)
T d1f0ya2 157 -LVEVIKTPMTSQKTFESLVDFSKALGKHPVSC 188 (192)
T ss_dssp -EEEEECCTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred -EEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 3446788899999999999999999975 554
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.75 E-value=6.6e-18 Score=128.26 Aligned_cols=134 Identities=19% Similarity=0.216 Sum_probs=103.9
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
+++||+||| +|+||++|+++|.++|| +|.+| ||+++... .+.+.++|++++++|+..+.++
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~----~V~~~-d~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~v 69 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGY----PISIL-DREDWAVA-------------ESILANADVVIVSVPINLTLET 69 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTC----CEEEE-CTTCGGGH-------------HHHHTTCSEEEECSCGGGHHHH
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCC----CcEec-cccccccc-------------chhhhhccccccccchhhheee
Confidence 457999999 99999999999999999 99999 99875432 3456789999999999999999
Q ss_pred HHHhchhcCCCCEEEEEcCCCCHHHH---HHHhCCCCEEEEccCchhhh--cCCce-EEEeCCCCCHHHHHHHHHHhhhc
Q 024121 88 AMQIRPLLSRKKLLVSVAAGVKLKDL---QEWTGHSRFIRVMPNTPSAV--GEAAT-VMSLGGTATEEDGELIGKLFGSV 161 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~~~~~l---~~~~~~~~~~~~~p~~~~~~--~~g~~-~~~~~~~~~~~~~~~v~~ll~~~ 161 (272)
+.++.+++++++++++++ +++.+.. .+.++ .+++..||...... ..+.. +++++. +++.++++.++|+.+
T Consensus 70 ~~~~~~~~~~~~iiiD~~-Svk~~~~~~~~~~~~-~~~v~~hP~~Gp~~~~~~g~~~v~~~g~--~~~~~~~~~~ll~~~ 145 (152)
T d2pv7a2 70 IERLKPYLTENMLLADLT-SVKREPLAKMLEVHT-GAVLGLHPMFGADIASMAKQVVVRCDGR--FPERYEWLLEQIQIW 145 (152)
T ss_dssp HHHHGGGCCTTSEEEECC-SCCHHHHHHHHHHCS-SEEEEEEECSCTTCSCCTTCEEEEEEEE--CGGGTHHHHHHHHHT
T ss_pred eecccccccCCceEEEec-ccCHHHHHHHHHHcc-CCEEEecccCCCcccccCCcEEEEecCC--CHHHHHHHHHHHHHh
Confidence 999999999999999874 5665443 33333 46788888643322 23433 344443 577899999999999
Q ss_pred CCe
Q 024121 162 GKI 164 (272)
Q Consensus 162 G~~ 164 (272)
|..
T Consensus 146 Ga~ 148 (152)
T d2pv7a2 146 GAK 148 (152)
T ss_dssp TCE
T ss_pred CCE
Confidence 954
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.74 E-value=7.1e-18 Score=131.47 Aligned_cols=146 Identities=15% Similarity=0.252 Sum_probs=106.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc--------eeecCc---hhhhccCCEEEEe
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--------KVLSDN---NAVVEYSDVVVFS 78 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~--------~~~~~~---~~~~~~aDivil~ 78 (272)
.|||||||+|+||.+|+++|+++|| +|++| ||++++.+++.+.+. ....+. ...+..++.++++
T Consensus 1 ~MkIGvIGlG~MG~~ma~~L~~~G~----~V~~~-dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (178)
T d1pgja2 1 SMDVGVVGLGVMGANLALNIAEKGF----KVAVF-NRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALIL 75 (178)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEEC
T ss_pred CCEEEEEeehHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEe
Confidence 3789999999999999999999999 99999 999999999987442 122222 2335578888888
Q ss_pred eCcc-cHHHHHHHhchhcCCCCEEEEEcCCCCHH---HHHHHhC--CCCEEEE-ccCchhhhcCCceEEEeCCCCCHHHH
Q 024121 79 VKPQ-VVKDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDG 151 (272)
Q Consensus 79 v~~~-~~~~v~~~l~~~l~~~~~iis~~~~~~~~---~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~ 151 (272)
+++. .+..++..+...+.++++++++++ ...+ .+.+.+. +..++.. +...|.....|.+++..| +++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~iii~~st-~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~~~mvgG---~~~~~ 151 (178)
T d1pgja2 76 VQAGAATDSTIEQLKKVFEKGDILVDTGN-AHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGG---TLSVW 151 (178)
T ss_dssp CCCSHHHHHHHHHHHHHCCTTCEEEECCC-CCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEE---CHHHH
T ss_pred ecCcchhhhhhhhhhhhccccceecccCc-cchhHHHHHHHHHhhcceeEecccccCCcchhcCCcEEEeeC---CHHHH
Confidence 8665 577888888888899999998754 4443 3334332 3344443 233444445566666555 78999
Q ss_pred HHHHHHhhhcCCe
Q 024121 152 ELIGKLFGSVGKI 164 (272)
Q Consensus 152 ~~v~~ll~~~G~~ 164 (272)
+.++++|+.++..
T Consensus 152 ~~v~pil~~~~~~ 164 (178)
T d1pgja2 152 EEIRPIVEAAAAK 164 (178)
T ss_dssp HHHHHHHHHHSCB
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999954
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.73 E-value=1.3e-17 Score=130.90 Aligned_cols=151 Identities=11% Similarity=0.134 Sum_probs=115.5
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------------CceeecCchhhhcc
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEY 71 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~ 71 (272)
+++.|+||+|||+|.||+++|..|.++|+ +|++| .|+++.++.+.+. ++.++.+..+++++
T Consensus 3 ~~~~m~KI~ViGaG~wGtAlA~~La~~g~----~V~l~-~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ 77 (189)
T d1n1ea2 3 ELLYLNKAVVFGSGAFGTALAMVLSKKCR----EVCVW-HMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG 77 (189)
T ss_dssp CCCCEEEEEEECCSHHHHHHHHHHHTTEE----EEEEE-CSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT
T ss_pred ccceeceEEEECCCHHHHHHHHHHHHcCC----eEEEE-EecHHHHHHHhhcccccccccccccccccccchhhhhccCC
Confidence 45667789999999999999999999999 99999 9999998877651 24566778899999
Q ss_pred CCEEEEeeCcccHHHHHHHhchh-----cCCCCEEEEEcCCCCHH-------HHHHHhCCCCE-EEEccCchhhhcCCc-
Q 024121 72 SDVVVFSVKPQVVKDVAMQIRPL-----LSRKKLLVSVAAGVKLK-------DLQEWTGHSRF-IRVMPNTPSAVGEAA- 137 (272)
Q Consensus 72 aDivil~v~~~~~~~v~~~l~~~-----l~~~~~iis~~~~~~~~-------~l~~~~~~~~~-~~~~p~~~~~~~~g~- 137 (272)
+|+||+|||.+.++++++++.++ +.++..+++++.|+..+ .+.+.++..++ +-.-|+.+.++.+|.
T Consensus 78 ad~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A~Ev~~~~p 157 (189)
T d1n1ea2 78 AEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVF 157 (189)
T ss_dssp CSCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCC
T ss_pred CCEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcHHHHHcCCC
Confidence 99999999999999999988763 45677889998888533 34444443233 334688888776664
Q ss_pred eE-EEeCCCCCHHHHHHHHHHhhhcCC
Q 024121 138 TV-MSLGGTATEEDGELIGKLFGSVGK 163 (272)
Q Consensus 138 ~~-~~~~~~~~~~~~~~v~~ll~~~G~ 163 (272)
+. ...+ .+.+..+.++++|+.-..
T Consensus 158 t~~viAs--~~~~~a~~i~~lfst~~~ 182 (189)
T d1n1ea2 158 TCVSIAS--ADINVARRLQRIMSTGDR 182 (189)
T ss_dssp EEEEEEC--SSHHHHHHHHHHHSCTTS
T ss_pred cEEEEEe--CCHHHHHHHHHHhCCCCC
Confidence 22 2333 378888999999986443
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=1.9e-17 Score=126.20 Aligned_cols=146 Identities=17% Similarity=0.145 Sum_probs=103.8
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHHHHH
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVAMQ 90 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v~~~ 90 (272)
||||||+|+||.+|+++|.++|+ . .+| +|++++..++.+.+.... +..+.+.++|++|+++|.. .+..+..+
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~----~-~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~v~~~~~~ 74 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFP----T-LVW-NRTFEKALRHQEEFGSEA-VPLERVAEARVIFTCLPTTREVYEVAEA 74 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSC----E-EEE-CSSTHHHHHHHHHHCCEE-CCGGGGGGCSEEEECCSSHHHHHHHHHH
T ss_pred eEEEEeHHHHHHHHHHHHHhCCC----E-EEE-eCCHHHHHHHHHHcCCcc-cccccccceeEEEecccchhhhhhhhcc
Confidence 79999999999999999999987 5 478 888888777766433333 3456677899999999754 57777788
Q ss_pred hchhcCCCCEEEEEcCCCCHH---HHHHHhC--CCCEEEE-ccCchhhhcCCce-EEEeCCCCCHHHHHHHHHHhhhcC-
Q 024121 91 IRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRV-MPNTPSAVGEAAT-VMSLGGTATEEDGELIGKLFGSVG- 162 (272)
Q Consensus 91 l~~~l~~~~~iis~~~~~~~~---~l~~~~~--~~~~~~~-~p~~~~~~~~g~~-~~~~~~~~~~~~~~~v~~ll~~~G- 162 (272)
+.+.+.+++++|+++ +++.+ .+.+.+. +.+++.+ +.+.|.....|.. ++..| +++.++.++++|+ ++
T Consensus 75 l~~~~~~~~~iid~s-T~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG---~~~~~~~~~p~L~-~~~ 149 (156)
T d2cvza2 75 LYPYLREGTYWVDAT-SGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGG---PEEAVERVRPFLA-YAK 149 (156)
T ss_dssp HTTTCCTTEEEEECS-CCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEES---CHHHHHHHGGGCT-TEE
T ss_pred ccccccccccccccc-cCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeC---CHHHHHHHHHHHH-hcC
Confidence 888889999999874 45544 3444443 2334432 2244555556654 44444 7999999999995 77
Q ss_pred CeEEcCc
Q 024121 163 KIWRADE 169 (272)
Q Consensus 163 ~~~~~~e 169 (272)
+.+++++
T Consensus 150 ~v~~~GP 156 (156)
T d2cvza2 150 KVVHVGP 156 (156)
T ss_dssp EEEEEES
T ss_pred cCEEeCc
Confidence 4577653
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.69 E-value=4.3e-16 Score=121.85 Aligned_cols=152 Identities=16% Similarity=0.114 Sum_probs=121.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------cC-------------ceeecC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-------------VKVLSD 64 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~g-------------~~~~~~ 64 (272)
+.+||+|||+|.||+.||..++.+|+ +|++| |++++.+++..+ .+ +....+
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~----~V~l~-D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 77 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGT----PILMK-DINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLS 77 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESS
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccc
Confidence 56889999999999999999999999 99999 999886543321 11 233334
Q ss_pred chhhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEE
Q 024121 65 NNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~ 141 (272)
. +.+.++|+||-|+|-+ .-.+++.+|.++.++++++.|.++++++..+.+.+. ..+++..|+..|...... .=++
T Consensus 78 ~-~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~l-VEiv 155 (186)
T d1wdka3 78 Y-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPL-VEVI 155 (186)
T ss_dssp S-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCE-EEEE
T ss_pred c-ccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCe-EEEC
Confidence 3 4578999999999855 346788999999999999999999999999988776 368999998777765443 3355
Q ss_pred eCCCCCHHHHHHHHHHhhhcCCe-EEc
Q 024121 142 LGGTATEEDGELIGKLFGSVGKI-WRA 167 (272)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~G~~-~~~ 167 (272)
+++.++++.++.+..+++.+|+. +++
T Consensus 156 ~~~~T~~~~~~~~~~~~~~lgk~pv~v 182 (186)
T d1wdka3 156 RGEKSSDLAVATTVAYAKKMGKNPIVV 182 (186)
T ss_dssp ECSSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 78889999999999999999975 544
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.64 E-value=1.1e-15 Score=119.08 Aligned_cols=142 Identities=17% Similarity=0.257 Sum_probs=102.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC--HHHHHHHHHc------C-------ceeecCchhhhccCCEE
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRDAFESI------G-------VKVLSDNNAVVEYSDVV 75 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~--~~~~~~l~~~------g-------~~~~~~~~~~~~~aDiv 75 (272)
|||+|||+|+||+++|..|.++|+ +|.+| .|. ++..+.+.+. + +....+..++++++|+|
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~----~V~l~-~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~I 75 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGN----EVRIW-GTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVV 75 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCC----EEEEE-CCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----EEEEE-EecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchh
Confidence 899999999999999999999999 99999 884 4556666541 1 22346677889999999
Q ss_pred EEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCC---------HHHHHHHhCC--CCE-EEEccCchhhhcCCce--EEE
Q 024121 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK---------LKDLQEWTGH--SRF-IRVMPNTPSAVGEAAT--VMS 141 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~---------~~~l~~~~~~--~~~-~~~~p~~~~~~~~g~~--~~~ 141 (272)
|+|||.+.++++++++.+++++. .++.++.|+. .+.+.+..+. .++ +-.-|+.+.++..+.. .+.
T Consensus 76 i~avps~~~~~~~~~l~~~l~~~-~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~vi 154 (180)
T d1txga2 76 LLGVSTDGVLPVMSRILPYLKDQ-YIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVF 154 (180)
T ss_dssp EECSCGGGHHHHHHHHTTTCCSC-EEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEE
T ss_pred hcccchhhhHHHHHhhccccccc-eecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEE
Confidence 99999999999999999998665 5555555541 1233333332 223 3345888777766542 223
Q ss_pred eCCCCCHHHHHHHHHHhhh
Q 024121 142 LGGTATEEDGELIGKLFGS 160 (272)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~ 160 (272)
++ .+.+..+.++++|+.
T Consensus 155 as--~~~~~a~~i~~~f~~ 171 (180)
T d1txga2 155 SS--PSESSANKMKEIFET 171 (180)
T ss_dssp EC--SCHHHHHHHHHHHCB
T ss_pred Ec--CCHHHHHHHHHHHCC
Confidence 33 377888899999975
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.62 E-value=3.3e-15 Score=116.42 Aligned_cols=93 Identities=20% Similarity=0.266 Sum_probs=80.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc---------------eeecCchhhhccCCE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV---------------KVLSDNNAVVEYSDV 74 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~---------------~~~~~~~~~~~~aDi 74 (272)
.+||+|||+|+||.++|..|.++|| +|.+| +|++++.+.+.+.+. ..+.+..|+++++|+
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~ 75 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQ----SVLAW-DIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADV 75 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSE
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCE
Confidence 3799999999999999999999999 99999 999999888876331 234567888999999
Q ss_pred EEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 75 vil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
||+|+|....+++++++.+++.++++|+. +++.
T Consensus 76 iii~v~~~~~~~~~~~i~~~l~~~~~iv~-~~g~ 108 (184)
T d1bg6a2 76 ILIVVPAIHHASIAANIASYISEGQLIIL-NPGA 108 (184)
T ss_dssp EEECSCGGGHHHHHHHHGGGCCTTCEEEE-SSCC
T ss_pred EEEEEchhHHHHHHHHhhhccCCCCEEEE-eCCC
Confidence 99999999999999999999999988774 4444
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=8.6e-16 Score=117.90 Aligned_cols=146 Identities=12% Similarity=0.183 Sum_probs=103.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC-------ceeecCchhhhccCCEEEEeeCccc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-------VKVLSDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g-------~~~~~~~~~~~~~aDivil~v~~~~ 83 (272)
|||+|||+|.||+.++..|.++|+ +|++| +|++++.+.+...+ .....+..+....+|+||+|||+.+
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~ 75 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGH----EVQGW-LRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQ 75 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC----ceEEE-EcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccc
Confidence 899999999999999999999999 99999 99887554332211 1233455677889999999999999
Q ss_pred HHHHHHHhchhcCCCCEEEEEcCCCCHHH-HHHHhCCCCEEEEc--------cCchhhhcCCceEEEeCCCCCHHHHHHH
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAAGVKLKD-LQEWTGHSRFIRVM--------PNTPSAVGEAATVMSLGGTATEEDGELI 154 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~~~~~~~-l~~~~~~~~~~~~~--------p~~~~~~~~g~~~~~~~~~~~~~~~~~v 154 (272)
++++++.+.+++.+++.|+++.+|+..++ +++ . ..+++... |+.-...+.|.+.+.+.. ...+..+.+
T Consensus 76 ~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~~l~~-~-~~~v~~g~~~~~~~~~~~~i~~~~~g~t~ig~~~-~~~~~~~~l 152 (167)
T d1ks9a2 76 VSDAVKSLASTLPVTTPILLIHNGMGTIEELQN-I-QQPLLMGTTTHAARRDGNVIIHVANGITHIGPAR-QQDGDYSYL 152 (167)
T ss_dssp HHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTT-C-CSCEEEEEECCEEEEETTEEEEEECCCEEEEESS-GGGTTCTHH
T ss_pred hHHHHHhhccccCcccEEeeccCcccHHHHHhh-c-CCcEEEEEeeEeEEecCCEEEEeCCcCEEEeeCC-CcchhHHHH
Confidence 99999999999999999999999987643 333 2 23443322 221122345666665432 233445677
Q ss_pred HHHhhhc-CCe
Q 024121 155 GKLFGSV-GKI 164 (272)
Q Consensus 155 ~~ll~~~-G~~ 164 (272)
.++|+.. ...
T Consensus 153 ~~~l~~a~~~~ 163 (167)
T d1ks9a2 153 ADILQTVLPDV 163 (167)
T ss_dssp HHHHHTTSSCE
T ss_pred HHHHHhhCCCC
Confidence 8888654 344
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.28 E-value=1.1e-12 Score=105.32 Aligned_cols=149 Identities=14% Similarity=0.136 Sum_probs=105.7
Q ss_pred CeEEEEcccH--HHHHHHH------HHHhCCCCCCCcEEEEeCCCHHHH-HHHH----------------H---------
Q 024121 11 FILGFIGAGK--MAESIAK------GVAKSGVLPPDRICTAVHSNLKRR-DAFE----------------S--------- 56 (272)
Q Consensus 11 ~~IgiIG~G~--mG~~la~------~l~~~g~~~~~~V~v~~~r~~~~~-~~l~----------------~--------- 56 (272)
.++.++|+|. ||..+.. +|.+.|+ .|++. |-++++. +.+. +
T Consensus 41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~----~v~~~-d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~ 115 (242)
T d2b0ja2 41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPG----LVVID-EFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPP 115 (242)
T ss_dssp CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSE----EEECC-CSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTT
T ss_pred eeeeeeeecHHhhhhchhhhhccchhhhhcCC----eEEEE-eCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCc
Confidence 4577888887 7766655 6788888 88888 8886542 1111 0
Q ss_pred -----------cCceeecCchhhhccCCEEEEeeCc-ccHHHHHHHhchhcCCCCEEEEEcCCCCHHH---HHHHhC--C
Q 024121 57 -----------IGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKD---LQEWTG--H 119 (272)
Q Consensus 57 -----------~g~~~~~~~~~~~~~aDivil~v~~-~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~---l~~~~~--~ 119 (272)
.|+.+++|+.|+++++|+||+|||. +.+.+++++|.++++++.+|++++ +++... +.+.+. +
T Consensus 116 ~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~S-Ti~~~~~~~l~e~l~~kg 194 (242)
T d2b0ja2 116 KACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHAC-TIPTTKFAKIFKDLGRED 194 (242)
T ss_dssp TEEEESSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECS-SSCHHHHHHHHHHTTCTT
T ss_pred cchhhcCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecC-CCcHHHHHHHHHhcccCC
Confidence 1466778899999999999999975 568899999999999999998764 455543 444443 3
Q ss_pred CCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCe-EEc
Q 024121 120 SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRA 167 (272)
Q Consensus 120 ~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~-~~~ 167 (272)
.+++..||..+.. ..|...+..+ ..+++.++.+.++|+.+|+. +++
T Consensus 195 i~vi~~hp~a~pe-~~g~~li~~~-~aseE~iekv~elles~Gk~~~vv 241 (242)
T d2b0ja2 195 LNITSYHPGCVPE-MKGQVYIAEG-YASEEAVNKLYEIGKIARGKAFKM 241 (242)
T ss_dssp SEEEECBCSSCTT-TCCCEEEEES-SSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred CEEECCCccCcCc-cccceEEecC-CCCHHHHHHHHHHHHHHCCCeEeC
Confidence 4677777755433 2333443333 36899999999999999964 543
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.19 E-value=6.8e-11 Score=93.04 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=93.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------------------cCceeecCchhhhc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------------------IGVKVLSDNNAVVE 70 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------------------~g~~~~~~~~~~~~ 70 (272)
|||+|||+|.+|.++|..|.++|| +|++| |.++++.+.+.+ .....+.+..++++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~----~V~g~-D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~ 75 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGH----EVIGV-DVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL 75 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH
T ss_pred CEEEEECCCHhHHHHHHHHHhCCC----cEEEE-eCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh
Confidence 899999999999999999999999 99999 999998877653 12345667788899
Q ss_pred cCCEEEEeeCcc----------cHHHHHHHhch---hcCCCCEEEEEcCCCCHHH--------HHHHhC---CCC-EEEE
Q 024121 71 YSDVVVFSVKPQ----------VVKDVAMQIRP---LLSRKKLLVSVAAGVKLKD--------LQEWTG---HSR-FIRV 125 (272)
Q Consensus 71 ~aDivil~v~~~----------~~~~v~~~l~~---~l~~~~~iis~~~~~~~~~--------l~~~~~---~~~-~~~~ 125 (272)
++|++|+|||.. .+..++..+.. ...++++||.- +++++.. +++... +.. .+..
T Consensus 76 ~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~-STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~ 154 (202)
T d1mv8a2 76 DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVR-STVLPGTVNNVVIPLIEDCSGKKAGVDFGVGT 154 (202)
T ss_dssp TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEEC-SCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEE
T ss_pred hCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeec-cccCCcchhhhhhhhhhccccccccccccchh
Confidence 999999999631 23455544433 34567777743 4443321 112221 111 2333
Q ss_pred ccC-----chhh-hcCCceEEEeCCCCCHHHHHHHHHHhhhcCC
Q 024121 126 MPN-----TPSA-VGEAATVMSLGGTATEEDGELIGKLFGSVGK 163 (272)
Q Consensus 126 ~p~-----~~~~-~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~ 163 (272)
.|- .... ...-...+..+ .+++..+.++++++.+..
T Consensus 155 ~PE~~~~G~a~~d~~~~~~iViG~--~~~~~~~~~~~ly~~i~~ 196 (202)
T d1mv8a2 155 NPEFLRESTAIKDYDFPPMTVIGE--LDKQTGDLLEEIYRELDA 196 (202)
T ss_dssp CCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTSSS
T ss_pred hhhhhcccchhhhhcCCCeEEEEe--CCHHHHHHHHHHHHhcCC
Confidence 442 1111 11111234333 267888999999998864
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.15 E-value=1.6e-10 Score=86.53 Aligned_cols=95 Identities=23% Similarity=0.283 Sum_probs=80.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
+.++|+|||+|.-|.+-|.+|.++|. +|.+- -|.. ...++..+.|..+. +.+|+++++|+|.+.+|+..-.++
T Consensus 15 k~k~IaViGYGsQG~AhAlNLrDSG~----~V~VG-Lr~gs~s~~~A~~~Gf~v~-~~~eA~~~aDiim~L~PD~~q~~v 88 (182)
T d1np3a2 15 QGKKVAIIGYGSQGHAHACNLKDSGV----DVTVG-LRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEFQGRL 88 (182)
T ss_dssp HTSCEEEECCSHHHHHHHHHHHHTTC----CEEEE-CCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHHHHHH
T ss_pred CCCEEEEEeeCcHhHHHHhhhhhcCC----CEEEE-cCCCCccHHHHhhhccccc-cHHHHhhhcCeeeeecchHHHHHH
Confidence 46899999999999999999999999 99988 6654 34566666898874 788999999999999999988899
Q ss_pred HH-HhchhcCCCCEEEEEcCCCCH
Q 024121 88 AM-QIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 88 ~~-~l~~~l~~~~~iis~~~~~~~ 110 (272)
++ ++.|++++++.+. ++.|..+
T Consensus 89 y~~~I~p~lk~g~~L~-FaHGfnI 111 (182)
T d1np3a2 89 YKEEIEPNLKKGATLA-FAHGFSI 111 (182)
T ss_dssp HHHHTGGGCCTTCEEE-ESCCHHH
T ss_pred HHHhhhhhcCCCcEEE-EeccceE
Confidence 95 7999999998876 5566554
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.02 E-value=1.4e-09 Score=84.26 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=103.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCC--CCCcEEEEeCCCHHHHHHHHHcCcee----ecCchhhhccCCEEEEeeCccc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVL--PPDRICTAVHSNLKRRDAFESIGVKV----LSDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~--~~~~V~v~~~r~~~~~~~l~~~g~~~----~~~~~~~~~~aDivil~v~~~~ 83 (272)
++||+|||+|.-|.+-|.+|.++|.- ..-.|.+--.++....+++.+.|..+ ..+..|+++++|+|.+.+|++.
T Consensus 44 ~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe~ 123 (226)
T d1qmga2 44 IKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSA 123 (226)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHHH
T ss_pred CCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchHH
Confidence 47899999999999999999996630 00156655234445566667777652 2356789999999999999999
Q ss_pred HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHH---hC-CCCEEEEccCchhhh------------cCCceEEE-eCCCC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW---TG-HSRFIRVMPNTPSAV------------GEAATVMS-LGGTA 146 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~---~~-~~~~~~~~p~~~~~~------------~~g~~~~~-~~~~~ 146 (272)
-.++++++.|++++++.+. .+-|..+...+.. .| +..++-+-|-.|.+. +.|+..++ ...+.
T Consensus 124 Q~~vy~~I~p~Lk~G~~L~-FaHGFnI~~~~~~~~~~p~dvdVimVAPKgPGh~VR~~Y~~Gk~~~G~GVP~LiAV~QD~ 202 (226)
T d1qmga2 124 QADNYEKVFSHMKPNSILG-LSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDV 202 (226)
T ss_dssp HHHHHHHHHHHSCTTCEEE-ESSSHHHHHHHHHTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTTTCCCCCEEEEEEECS
T ss_pred HHHHHHHHHHhcCCCceee-ecchhhhhhceeeecccCCCceEEEECCCCCCchHHHHHHcccccCCCCceeEEEEEECC
Confidence 9999999999999998877 4567665433322 12 345555556555431 22554432 22234
Q ss_pred CHHHHHHHHHHhhhcCC
Q 024121 147 TEEDGELIGKLFGSVGK 163 (272)
Q Consensus 147 ~~~~~~~v~~ll~~~G~ 163 (272)
+..+.+....+...+|.
T Consensus 203 sG~A~~~alayA~aIG~ 219 (226)
T d1qmga2 203 DGRATDVALGWSIALGS 219 (226)
T ss_dssp SSCHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHhCCC
Confidence 55677777788888774
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.90 E-value=3.4e-09 Score=82.05 Aligned_cols=113 Identities=13% Similarity=0.189 Sum_probs=82.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
.....++|||||+|++|..+++.+..-|. +|..| +|...........++....+..+++++||+|++++|-. ..
T Consensus 40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~----~v~~~-d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T 114 (188)
T d2naca1 40 YDLEAMHVGTVAAGRIGLAVLRRLAPFDV----HLHYT-DRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPET 114 (188)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHGGGTC----EEEEE-CSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTT
T ss_pred eeccccceeeccccccchhhhhhhhccCc----eEEEE-eeccccccccccccccccCCHHHHHHhccchhhcccccccc
Confidence 34457899999999999999999998888 99999 98654444444466777788899999999999999743 33
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhCCCCEE
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTGHSRFI 123 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~~~~~~ 123 (272)
+.++ .+....++++.++|+++-| +..+.+.+.+...++.
T Consensus 115 ~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ 156 (188)
T d2naca1 115 EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLA 156 (188)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEE
T ss_pred hhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCce
Confidence 3333 2344557899999988654 4556676666533443
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.88 E-value=7e-09 Score=77.97 Aligned_cols=94 Identities=21% Similarity=0.293 Sum_probs=68.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee--ecCchhhhccCCEEEEeeCcc--
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKPQ-- 82 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDivil~v~~~-- 82 (272)
.+.++|.|||+|.||..++++|.+.|. .+++++ +|+.++++.+.+ .|... ..+..+.+.++|+||.|+...
T Consensus 22 l~~~~ilviGaG~~g~~v~~~L~~~g~---~~i~v~-nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~~~ 97 (159)
T d1gpja2 22 LHDKTVLVVGAGEMGKTVAKSLVDRGV---RAVLVA-NRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPHP 97 (159)
T ss_dssp CTTCEEEEESCCHHHHHHHHHHHHHCC---SEEEEE-CSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSSC
T ss_pred cccCeEEEECCCHHHHHHHHHHHhcCC---cEEEEE-cCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCCCc
Confidence 367899999999999999999999986 369999 999999988877 56553 345566788999999999643
Q ss_pred cH-HHHHHHhchhc--CCCCEEEEEc
Q 024121 83 VV-KDVAMQIRPLL--SRKKLLVSVA 105 (272)
Q Consensus 83 ~~-~~v~~~l~~~l--~~~~~iis~~ 105 (272)
.+ .+.++.....- ++..+++|++
T Consensus 98 ii~~~~i~~~~~~r~~~~~~~iiDla 123 (159)
T d1gpja2 98 VIHVDDVREALRKRDRRSPILIIDIA 123 (159)
T ss_dssp CBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred cccHhhhHHHHHhcccCCCeEEEeec
Confidence 22 44444332221 2334778863
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.87 E-value=2.9e-09 Score=81.81 Aligned_cols=100 Identities=11% Similarity=0.142 Sum_probs=75.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~ 86 (272)
...++|||||+|.+|+.+++.+..-|. +|.+| +|++.. .......+.++++.+||+|++++|.. ..+.
T Consensus 40 l~gk~vgIiG~G~IG~~va~~l~~~g~----~v~~~-d~~~~~------~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~ 108 (181)
T d1qp8a1 40 IQGEKVAVLGLGEIGTRVGKILAALGA----QVRGF-SRTPKE------GPWRFTNSLEEALREARAAVCALPLNKHTRG 108 (181)
T ss_dssp CTTCEEEEESCSTHHHHHHHHHHHTTC----EEEEE-CSSCCC------SSSCCBSCSHHHHTTCSEEEECCCCSTTTTT
T ss_pred ccCceEEEeccccccccceeeeecccc----ccccc-cccccc------cceeeeechhhhhhccchhhccccccccccc
Confidence 567899999999999999999999999 99999 987532 22334467899999999999999853 3333
Q ss_pred HH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 87 VA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 87 v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
++ .+....++++.++|+++-| +..+.+.+.+.
T Consensus 109 li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~ 143 (181)
T d1qp8a1 109 LVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILK 143 (181)
T ss_dssp CBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred ccccceeeeccccceEEeccccccccchhhhhhcc
Confidence 33 2344557899999988654 45566666554
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.84 E-value=4.1e-09 Score=81.65 Aligned_cols=107 Identities=13% Similarity=0.109 Sum_probs=78.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|++|+.+++.+..-|. +|.+| ++...........+.....+.++++++||+|++++|-. ..+
T Consensus 44 ~l~g~tvgIiG~G~IG~~va~~l~~fg~----~v~~~-d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~ 118 (191)
T d1gdha1 44 KLDNKTLGIYGFGSIGQALAKRAQGFDM----DIDYF-DTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETR 118 (191)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTT
T ss_pred eecccceEEeecccchHHHHHHHHhhcc----ccccc-cccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHh
Confidence 3346899999999999999999998888 99999 88654433333445555567889999999999999853 334
Q ss_pred HHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 86 ~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
.++ .+....++++.++|+++-| +..+.+.+.+.
T Consensus 119 ~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~ 154 (191)
T d1gdha1 119 YFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALE 154 (191)
T ss_dssp TCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred heecHHHhhCcCCccEEEecCCccchhhHHHHHHHH
Confidence 444 2344557899999988644 34566666554
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.83 E-value=4.3e-09 Score=81.66 Aligned_cols=107 Identities=18% Similarity=0.178 Sum_probs=78.4
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
.....++|||||+|++|+.+++.+..-|. +|.+| ++..... .....++....+.++++++||+|++++|.. ..
T Consensus 45 ~eL~gktvgIiG~G~IG~~va~~l~~fg~----~v~~~-d~~~~~~-~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T 118 (193)
T d1mx3a1 45 ARIRGETLGIIGLGRVGQAVALRAKAFGF----NVLFY-DPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHN 118 (193)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTC
T ss_pred eeeeCceEEEeccccccccceeeeecccc----ceeec-cCccccc-chhhhccccccchhhccccCCEEEEeecccccc
Confidence 34456899999999999999999999898 99999 8865432 222356666678899999999999999843 23
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
..++ .+....++++.++|+++-|- ..+.+.+.+.
T Consensus 119 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~ 155 (193)
T d1mx3a1 119 HHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALK 155 (193)
T ss_dssp TTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred hhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHH
Confidence 3333 23345578999999887553 4566666654
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.81 E-value=3.3e-08 Score=72.98 Aligned_cols=98 Identities=13% Similarity=0.177 Sum_probs=66.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------c--CceeecCchhhhccCCEEE
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------I--GVKVLSDNNAVVEYSDVVV 76 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~--g~~~~~~~~~~~~~aDivi 76 (272)
|.+.|||+|||+|.+|++++..|...|. ..+|.++ |+++++++.... . ......+. +.+++||+|+
T Consensus 2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~--~~elvL~-D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-~~~~~adivv 77 (146)
T d1ez4a1 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGI--AEEFVIV-DVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-SDCKDADLVV 77 (146)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTC--CSEEEEE-CSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-GGGTTCSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCC--CcEEEEe-ecccchhHHHHHHHhccccccCCceEeeccH-HHhccccEEE
Confidence 4457899999999999999999999885 2489999 999876543221 1 12233454 4578999999
Q ss_pred EeeC----cc------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 77 FSVK----PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 77 l~v~----~~------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
++.. +. .++++.+++..+ .|+.+++-.+++..
T Consensus 78 itag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvtNPvd 125 (146)
T d1ez4a1 78 ITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVD 125 (146)
T ss_dssp ECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH
T ss_pred EecccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeCCccH
Confidence 9862 11 122444556554 57778877666543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.79 E-value=3.3e-08 Score=71.82 Aligned_cols=89 Identities=15% Similarity=0.179 Sum_probs=66.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceee-cCc--hh-----hhccCCEEEEeeCc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL-SDN--NA-----VVEYSDVVVFSVKP 81 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~-~~~--~~-----~~~~aDivil~v~~ 81 (272)
|||.|+|+|.+|..+++.|.+.|+ +|.+. ++++++++.+.+ .+..+. .|. .+ -++++|.++.++++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~----~v~vi-d~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~ 75 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGH----DIVLI-DIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGK 75 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----Cccee-cCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCc
Confidence 799999999999999999999999 99999 999999998876 465542 221 11 15689999999888
Q ss_pred ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
+...-.+..+...+.+.++|+-.
T Consensus 76 d~~N~~~~~~~k~~~~~~iI~~~ 98 (132)
T d1lssa_ 76 EEVNLMSSLLAKSYGINKTIARI 98 (132)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEC
T ss_pred HHHHHHHHHHHHHcCCceEEEEe
Confidence 76554444444445666666544
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.78 E-value=7.1e-08 Score=70.70 Aligned_cols=96 Identities=19% Similarity=0.324 Sum_probs=66.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---------cCceeecCchhhhccCCEEEEee--
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---------IGVKVLSDNNAVVEYSDVVVFSV-- 79 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---------~g~~~~~~~~~~~~~aDivil~v-- 79 (272)
|||+|||+|++|++++..+...+.. .++.++ |+++++++.... ....+..+..+.+++||+|+++.
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~--~el~L~-Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~ 77 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFA--REMVLI-DVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGV 77 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC--CEEEEE-ecccccccchhccccccccccccccccCCcHHHhcCCCEEEEeccc
Confidence 7999999999999999999988863 489999 999877643222 12233444456689999999996
Q ss_pred C--ccc------------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 80 K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 80 ~--~~~------------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
| +.. ++++.+.+.++ .|+.+++-.++++..
T Consensus 78 ~~~~g~~r~dl~~~N~~I~~~i~~~i~~~-~p~aivivvtNPvd~ 121 (140)
T d1a5za1 78 PQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVTNPVDV 121 (140)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHH
T ss_pred ccCCCcchhhhhccccchHHHHHHHHHhc-CCCcEEEEeCCcHHH
Confidence 2 211 22333445554 577788877776543
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=2.1e-08 Score=75.74 Aligned_cols=98 Identities=12% Similarity=0.110 Sum_probs=68.9
Q ss_pred CeEEEEcccHHHHH-HHHHHHhC-CCCCCCcE-EEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 11 FILGFIGAGKMAES-IAKGVAKS-GVLPPDRI-CTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG~G~mG~~-la~~l~~~-g~~~~~~V-~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
+||||||+|.||.. ....+.+. ++ ++ .++ ++++++++.+.+ .++...++.+++.++.|+|++|+|+....+
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~~~----~i~~v~-d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~ 76 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAASDW----TLQGAW-SPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFD 76 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSE----EEEEEE-CSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCCc----EEEEEE-echhHhhhhhhhcccccccccchhhhhhcccccccccchhccc
Confidence 68999999999986 45556554 33 55 467 999998888776 788777888888899999999999887666
Q ss_pred HHHHhchhcCCCC-EEEEEcCCCCHHHHHHH
Q 024121 87 VAMQIRPLLSRKK-LLVSVAAGVKLKDLQEW 116 (272)
Q Consensus 87 v~~~l~~~l~~~~-~iis~~~~~~~~~l~~~ 116 (272)
+...... .++ +++.-.-+.+.++..+.
T Consensus 77 ~~~~al~---~gk~V~~EKPla~~~~e~~~l 104 (164)
T d1tlta1 77 VVSTLLN---AGVHVCVDKPLAENLRDAERL 104 (164)
T ss_dssp HHHHHHH---TTCEEEEESSSCSSHHHHHHH
T ss_pred ccccccc---ccceeeccccccCCHHHHHHH
Confidence 6655443 344 44432223345555443
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.71 E-value=1.4e-07 Score=69.45 Aligned_cols=96 Identities=21% Similarity=0.339 Sum_probs=65.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H----cC--ceeecCchhhhccCCEEEEeeC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----IG--VKVLSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~----~g--~~~~~~~~~~~~~aDivil~v~ 80 (272)
+||+|||+|.+|++++..|...|.. .++.++ |+++++++... . .+ ..+..+..+.+++||+|+++..
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~--~elvL~-Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG 78 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVA--DDYVFI-DANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLG 78 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCS
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCC--ceEEEE-ecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecc
Confidence 7999999999999999999988853 389999 99988754322 1 12 2333334456899999999852
Q ss_pred -cc-------------------cHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 81 -PQ-------------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 81 -~~-------------------~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
+. .++++.+.+..+ .|+.+++-.++++..
T Consensus 79 ~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNPvD~ 127 (146)
T d1hyha1 79 NIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVISNPVDV 127 (146)
T ss_dssp CGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHH
T ss_pred ccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCcHHH
Confidence 11 023344455544 578888877776543
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.69 E-value=6.9e-08 Score=70.17 Aligned_cols=88 Identities=14% Similarity=0.226 Sum_probs=63.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ecC---c---hhh-hccCCEEEEeeCcc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSD---N---NAV-VEYSDVVVFSVKPQ 82 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~~---~---~~~-~~~aDivil~v~~~ 82 (272)
+++.|+|+|.+|..+++.|.+.|+ +|+++ +.++++++.+...+..+ ..| . .++ +.++|.+|++++++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~----~vvvi-d~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~ 75 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGH----EVLAV-DINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN 75 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC----CCEEE-ESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----eEEEe-cCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCch
Confidence 578999999999999999999999 99999 99999999988766543 111 1 222 67899999999876
Q ss_pred cHHHHH-HHhchhcCCCCEEEEE
Q 024121 83 VVKDVA-MQIRPLLSRKKLLVSV 104 (272)
Q Consensus 83 ~~~~v~-~~l~~~l~~~~~iis~ 104 (272)
....++ ..+.... +...++.-
T Consensus 76 ~~~~~~~~~~~~~~-~~~~iiar 97 (134)
T d2hmva1 76 IQASTLTTLLLKEL-DIPNIWVK 97 (134)
T ss_dssp HHHHHHHHHHHHHT-TCSEEEEE
T ss_pred HHhHHHHHHHHHHc-CCCcEEee
Confidence 544333 3333333 33344433
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.68 E-value=1.8e-08 Score=76.74 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=64.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCce-ee-------cCchhhhccCCEEEEeeC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK-VL-------SDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~-~~-------~~~~~~~~~aDivil~v~ 80 (272)
.++|.|||+|.||..+|+.|.+.|| +|++| ||+.++++.+.+ .+.. .. ....+.+...|+++.++|
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~----~V~v~-dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 76 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGI----KVTVA-CRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP 76 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTC----EEEEE-ESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-ECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeecc
Confidence 5789999999999999999999999 99999 999999999887 2211 11 122455778899999988
Q ss_pred cccHHHHHHHhchhcCCCCEEEEE
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
......+..... ..+..+++.
T Consensus 77 ~~~~~~~~~~~~---~~~~~~~~~ 97 (182)
T d1e5qa1 77 YTFHATVIKSAI---RQKKHVVTT 97 (182)
T ss_dssp GGGHHHHHHHHH---HHTCEEECS
T ss_pred chhhhHHHHHHH---hhccceeec
Confidence 776555544332 234556654
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.68 E-value=2e-08 Score=77.57 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=75.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~ 84 (272)
.....++|||||+|.+|..+++.+..-|. +|.+| ++..... ........+.+++++.||+|++++|- ...
T Consensus 40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~----~v~~~-d~~~~~~----~~~~~~~~~l~ell~~sDii~i~~plt~~T 110 (188)
T d1sc6a1 40 FEARGKKLGIIGYGHIGTQLGILAESLGM----YVYFY-DIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPST 110 (188)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTTT
T ss_pred ccccceEEEEeecccchhhhhhhcccccc----eEeec-cccccch----hhhhhhhhhHHHHHhhccceeecccCCcch
Confidence 34566899999999999999999999898 99999 8764321 12233345788999999999999973 333
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
..++ .+....++++.++|+++-| +..+.|.+.+.
T Consensus 111 ~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~ 147 (188)
T d1sc6a1 111 KNMMGAKEISLMKPGSLLINASRGTVVDIPALADALA 147 (188)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred hhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHH
Confidence 3333 2344556789999988654 35567777665
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.67 E-value=1.2e-07 Score=70.57 Aligned_cols=99 Identities=12% Similarity=0.213 Sum_probs=67.5
Q ss_pred CCCC-CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeecCchhhhccC
Q 024121 6 IPAE-SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYS 72 (272)
Q Consensus 6 ~~~~-~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~a 72 (272)
.+++ .+||+|||+|.+|++++..+...++ .++.++ |.++++++.... .+ .....+.++.++++
T Consensus 2 ~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~---~el~L~-D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (154)
T d1pzga1 2 ALVQRRKKVAMIGSGMIGGTMGYLCALREL---ADVVLY-DVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGA 77 (154)
T ss_dssp CCCSCCCEEEEECCSHHHHHHHHHHHHHTC---CEEEEE-CSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTC
T ss_pred ccccCCCcEEEECCCHHHHHHHHHHHhCCC---ceEEEE-EeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCC
Confidence 3444 5799999999999999998888886 389999 998766543322 11 22334456778999
Q ss_pred CEEEEeeC----cc-----------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 73 DVVVFSVK----PQ-----------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 73 Divil~v~----~~-----------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|+|+++.. +. .++++++++..+ .|+.+++..++++.
T Consensus 78 diVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~-~p~aiviivsNPvd 134 (154)
T d1pzga1 78 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVTNPLD 134 (154)
T ss_dssp SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHH
T ss_pred CeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhc-CCCcEEEEeCCcHH
Confidence 99999862 11 134455556554 47778887777654
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.66 E-value=5.3e-08 Score=74.84 Aligned_cols=109 Identities=12% Similarity=0.193 Sum_probs=78.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....+++||||+|.+|+.+++.+..-|. +|.+| ++..... .....++.. .+.++++++||+|++++|-. ..+
T Consensus 41 ~l~~k~vgiiG~G~IG~~va~~~~~fg~----~v~~~-d~~~~~~-~~~~~~~~~-~~l~ell~~sDiv~~~~Plt~~T~ 113 (184)
T d1ygya1 41 EIFGKTVGVVGLGRIGQLVAQRIAAFGA----YVVAY-DPYVSPA-RAAQLGIEL-LSLDDLLARADFISVHLPKTPETA 113 (184)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CTTSCHH-HHHHHTCEE-CCHHHHHHHCSEEEECCCCSTTTT
T ss_pred cccceeeeeccccchhHHHHHHhhhccc----eEEee-cCCCChh-HHhhcCcee-ccHHHHHhhCCEEEEcCCCCchhh
Confidence 3456899999999999999999988887 99999 8875433 223345554 47789999999999999843 344
Q ss_pred HHHH-HhchhcCCCCEEEEEcCC--CCHHHHHHHhCCCCE
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTGHSRF 122 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~--~~~~~l~~~~~~~~~ 122 (272)
.++. +....++++.++|+++-| +..+.+.+.+...++
T Consensus 114 ~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i 153 (184)
T d1ygya1 114 GLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 153 (184)
T ss_dssp TCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSE
T ss_pred hhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcE
Confidence 4442 344557899999988654 345667666653333
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.66 E-value=1.3e-08 Score=79.01 Aligned_cols=105 Identities=13% Similarity=0.179 Sum_probs=74.7
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
+....++|||||+|++|+.+++.+..-|. +|.+| ++...... ...+.. ..+..+++++||+|++++|.. ..
T Consensus 39 ~el~gk~vgIiG~G~IG~~va~~l~~fg~----~V~~~-d~~~~~~~--~~~~~~-~~~l~~~l~~sDii~~~~plt~~T 110 (197)
T d1j4aa1 39 REVRDQVVGVVGTGHIGQVFMQIMEGFGA----KVITY-DIFRNPEL--EKKGYY-VDSLDDLYKQADVISLHVPDVPAN 110 (197)
T ss_dssp CCGGGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCHHH--HHTTCB-CSCHHHHHHHCSEEEECSCCCGGG
T ss_pred ccccCCeEEEecccccchhHHHhHhhhcc----ccccc-Cccccccc--ccceee-eccccccccccccccccCCccccc
Confidence 34556899999999999999999998888 99999 87654322 223443 357889999999999999853 23
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
+.++ .+....++++.++|+++-| +..+.+.+.+.
T Consensus 111 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~ 147 (197)
T d1j4aa1 111 VHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD 147 (197)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred cccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHh
Confidence 3333 2333456789999987644 34566666654
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.66 E-value=1.2e-07 Score=70.11 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=67.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----------cCceeecCchhhhccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----------IGVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----------~g~~~~~~~~~~~~~aDivil~ 78 (272)
...||+|||+|.+|++++..|...|. ..++.++ |+++++++.... ....+..+..+.+++||+|+++
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l--~~el~L~-Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvit 81 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGI--ADEIVLI-DANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVIC 81 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTC--CSEEEEE-CSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEEC
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCC--CceEEEE-eeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEe
Confidence 45699999999999999999999886 3489999 999877442221 1334444455678999999998
Q ss_pred e--Cc--c------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 79 V--KP--Q------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 79 v--~~--~------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
. |. . .++++.+++..+ .|+.+++-.++++.
T Consensus 82 ag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~ivvtNPvd 127 (148)
T d1ldna1 82 AGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVATNPVD 127 (148)
T ss_dssp CSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSHH
T ss_pred cccccccCcchhHHHHHHHHHHHHHHHHHHhh-CCCceEEEecCccH
Confidence 6 21 1 123344556655 47778777766554
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.66 E-value=1.8e-07 Score=71.65 Aligned_cols=103 Identities=12% Similarity=0.148 Sum_probs=69.6
Q ss_pred CCCCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cCc-eeecCchhhhc--cCCEEEEeeCc
Q 024121 8 AESFILGFIGAGKMAES-IAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSVKP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~-la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDivil~v~~ 81 (272)
|+.+||||||+|.+|.. ....+.+.+. ..+|. ++ ++++++++.+.+ .+. ..+.+.+++++ +.|+|++|+|+
T Consensus 1 MkkirigiIG~G~~g~~~h~~~l~~~~~--~~~i~~v~-d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~ 77 (181)
T d1zh8a1 1 LRKIRLGIVGCGIAARELHLPALKNLSH--LFEITAVT-SRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV 77 (181)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTT--TEEEEEEE-CSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhCCC--CeEEEEEE-eccHhhhhhhhccccccceeeeeeccccccccceeeccccc
Confidence 45679999999999986 4666665332 11554 67 999999888776 554 56778888876 57999999999
Q ss_pred ccHHHHHHHhchhcCCCCEE-EEEcCCCCHHHHHHH
Q 024121 82 QVVKDVAMQIRPLLSRKKLL-VSVAAGVKLKDLQEW 116 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~i-is~~~~~~~~~l~~~ 116 (272)
+...+++..+.. .++-| +.-.-+.+.+++.+.
T Consensus 78 ~~h~~~~~~al~---~gk~V~~EKPl~~~~~e~~~l 110 (181)
T d1zh8a1 78 ELNLPFIEKALR---KGVHVICEKPISTDVETGKKV 110 (181)
T ss_dssp GGHHHHHHHHHH---TTCEEEEESSSSSSHHHHHHH
T ss_pred cccccccccccc---cchhhhcCCCCcCCHHHHHHH
Confidence 877777665543 34444 432223455554443
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.65 E-value=1.8e-07 Score=68.69 Aligned_cols=95 Identities=21% Similarity=0.263 Sum_probs=64.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----------cCcee-ecCchhhhccCCEEEEee
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----------IGVKV-LSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----------~g~~~-~~~~~~~~~~aDivil~v 79 (272)
|||+|||+|++|++++..|...+.. +++.++ |+++++.+.... ....+ ..+..+.++++|+|+++.
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~--~el~L~-Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvita 77 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLA--RELVLL-DVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITA 77 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC--SEEEEE-CSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC--ceEEEe-ccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEE
Confidence 7999999999999999999998852 389999 998876542211 12233 234456689999999996
Q ss_pred --C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 --K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 --~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
| +. . ++++.+.+..+ .|+.+++-.++++.
T Consensus 78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNPvd 122 (142)
T d1guza1 78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVSNPLD 122 (142)
T ss_dssp SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECCSSHH
T ss_pred ecCCCCCCchHHHHHHHHHHHHHHHHHhhcc-CCCeEEEEecCChH
Confidence 2 21 1 23344455554 47777777766544
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.63 E-value=4.3e-08 Score=75.54 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=54.2
Q ss_pred CeEEEE-cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-------CceeecCchhhhccCCEEEEeeCcc
Q 024121 11 FILGFI-GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-------GVKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 11 ~~IgiI-G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-------g~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
|||+|| |+|.||++||+.|.++|| +|.+| +|++++++.+.+. ......+........+....+++..
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~----~V~l~-~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGH----EIVVG-SRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWE 75 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC----EEEEE-ESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhheeee
Confidence 899999 899999999999999999 99999 9999998877651 1122233444455667777776655
Q ss_pred cHHHHH
Q 024121 83 VVKDVA 88 (272)
Q Consensus 83 ~~~~v~ 88 (272)
...+.+
T Consensus 76 ~~~~~~ 81 (212)
T d1jaya_ 76 HAIDTA 81 (212)
T ss_dssp HHHHHH
T ss_pred ccchHH
Confidence 554444
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.62 E-value=3.6e-08 Score=76.78 Aligned_cols=108 Identities=11% Similarity=0.120 Sum_probs=75.6
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
.....++|||||+|++|+.+++.+..-|. +|.+| ++.+.... ..... ..+.+++++.||+|++++|.. ..
T Consensus 41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~----~v~~~-d~~~~~~~---~~~~~-~~~l~~l~~~~D~v~~~~plt~~T 111 (199)
T d1dxya1 41 KELGQQTVGVMGTGHIGQVAIKLFKGFGA----KVIAY-DPYPMKGD---HPDFD-YVSLEDLFKQSDVIDLHVPGIEQN 111 (199)
T ss_dssp CCGGGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCSSC---CTTCE-ECCHHHHHHHCSEEEECCCCCGGG
T ss_pred ccccceeeeeeecccccccccccccccce----eeecc-CCccchhh---hcchh-HHHHHHHHHhcccceeeecccccc
Confidence 44556899999999999999999998888 99999 88654311 12233 347889999999999999743 33
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhCCCCE
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTGHSRF 122 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~~~~~ 122 (272)
+.++ .+....++++.++|+++-|- ..+.+.+.+...++
T Consensus 112 ~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i 152 (199)
T d1dxya1 112 THIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKL 152 (199)
T ss_dssp TTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSE
T ss_pred cccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCc
Confidence 3333 23344568899999886543 44666666643333
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.62 E-value=2.1e-07 Score=70.27 Aligned_cols=101 Identities=17% Similarity=0.165 Sum_probs=68.2
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCc-eeecCchhhhc-cCCEEEEeeCcccHH
Q 024121 10 SFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGV-KVLSDNNAVVE-YSDVVVFSVKPQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~-~aDivil~v~~~~~~ 85 (272)
.+||||||+|.||.. ....+.+.+. .++.++ ++++++.+.+.+ .++ ....+.+++++ +.|+|++|+|+....
T Consensus 1 tirvgiiG~G~~~~~~~~~~l~~~~~---~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~ 76 (167)
T d1xeaa1 1 SLKIAMIGLGDIAQKAYLPVLAQWPD---IELVLC-TRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHS 76 (167)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTT---EEEEEE-CSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHH
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhCCC---cEEEEE-ECCHHHHHHHHHhcccccccccHHHhcccccceecccccccccc
Confidence 379999999999976 4555555432 277788 999999988877 554 35567677665 679999999998877
Q ss_pred HHHHHhchhcCCCCEEEEEcCCCCHHHHHHH
Q 024121 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW 116 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~ 116 (272)
+++...... .-.+++.-.-+.+.+..++.
T Consensus 77 ~~~~~al~~--gk~V~~EKP~~~~~~e~~~l 105 (167)
T d1xeaa1 77 TLAAFFLHL--GIPTFVDKPLAASAQECENL 105 (167)
T ss_dssp HHHHHHHHT--TCCEEEESCSCSSHHHHHHH
T ss_pred ccccccccc--ccccccCCCCcCCHHHHHHH
Confidence 776655432 12345543234455554443
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.60 E-value=4.9e-08 Score=75.84 Aligned_cols=65 Identities=12% Similarity=0.210 Sum_probs=51.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH------------------cCceeecCchhhhccC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES------------------IGVKVLSDNNAVVEYS 72 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~------------------~g~~~~~~~~~~~~~a 72 (272)
|||+|||+|.+|.++|..+. .|+ +|++| |.++++.+.+.+ .......+......++
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~----~V~g~-Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ 74 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQN----EVTIV-DILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEA 74 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTS----EEEEE-CSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHC
T ss_pred CEEEEECCChhHHHHHHHHH-CCC----cEEEE-ECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhcc
Confidence 89999999999999998775 699 99999 999998877664 1122333445557799
Q ss_pred CEEEEeeCc
Q 024121 73 DVVVFSVKP 81 (272)
Q Consensus 73 Divil~v~~ 81 (272)
|++++|||.
T Consensus 75 ~ii~v~vpt 83 (196)
T d1dlja2 75 ELVIIATPT 83 (196)
T ss_dssp SEEEECCCC
T ss_pred ccccccCCc
Confidence 999999963
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.57 E-value=2.4e-07 Score=71.01 Aligned_cols=98 Identities=13% Similarity=0.315 Sum_probs=68.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cC----ceeecCchhhhc--cCCEEEEeeCc
Q 024121 11 FILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IG----VKVLSDNNAVVE--YSDVVVFSVKP 81 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g----~~~~~~~~~~~~--~aDivil~v~~ 81 (272)
+||||||+|.||...+..+... ++ +|. ++ ++++++++.+.+ .+ ....++.+++++ +.|+|++|+|+
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~----~i~ai~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~ 76 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNA----TISGVA-SRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 76 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTE----EEEEEE-CSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCC----EEEEEE-eCCccccccchhccccccceeecCcHHHhhhccccceeeecccc
Confidence 6899999999999999988775 33 665 66 999998887766 44 456788888774 58999999998
Q ss_pred ccHHHHHHHhchhcCCCCEEE-EEcCCCCHHHHHHH
Q 024121 82 QVVKDVAMQIRPLLSRKKLLV-SVAAGVKLKDLQEW 116 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~ii-s~~~~~~~~~l~~~ 116 (272)
...-+.+.... ..++-|+ .-.-+.+.++..+.
T Consensus 77 ~~h~~~~~~~l---~~g~~v~~EKP~~~~~~e~~~l 109 (184)
T d1ydwa1 77 SLHVEWAIKAA---EKGKHILLEKPVAMNVTEFDKI 109 (184)
T ss_dssp GGHHHHHHHHH---TTTCEEEECSSCSSSHHHHHHH
T ss_pred hhhcchhhhhh---hccceeecccccccCHHHHHHH
Confidence 87666655443 3444443 22223345554443
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.55 E-value=6.8e-07 Score=66.61 Aligned_cols=97 Identities=16% Similarity=0.198 Sum_probs=65.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H----cC--ceeecCchhhhccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----IG--VKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~----~g--~~~~~~~~~~~~~aDivil~ 78 (272)
...||+|||+|++|++++..|...|.. +++.++ |+++++++... . .+ ........+.+++||+|+++
T Consensus 19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~--~ElvLi-D~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVit 95 (160)
T d1i0za1 19 PNNKITVVGVGQVGMACAISILGKSLA--DELALV-DVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVT 95 (160)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCC--SEEEEE-CSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEEC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCC--cEEEEE-EeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEe
Confidence 346999999999999999999999874 489999 99987764322 1 11 11223334558999999997
Q ss_pred e--C--c-c-----------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 79 V--K--P-Q-----------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 79 v--~--~-~-----------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
. | + + .++++.+++.++ .++.+++-.++++.
T Consensus 96 Ag~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvtNPvD 141 (160)
T d1i0za1 96 AGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNPVD 141 (160)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH
T ss_pred cCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCchH
Confidence 5 2 1 1 122334455554 57778887777654
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.52 E-value=3.5e-07 Score=67.01 Aligned_cols=94 Identities=20% Similarity=0.284 Sum_probs=63.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH----cC----ceeecCchhhhccCCEEEEe
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----IG----VKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~----~g----~~~~~~~~~~~~~aDivil~ 78 (272)
|||+|||+|++|++++..+...|.. +++.++ |+++++++. +.. .+ +....+ .+.++++|+|+++
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~--~elvL~-Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiVvit 76 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDV--DEIALV-DIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVT 76 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCC--SEEEEE-CSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcC--ceEEEE-ecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEEEEe
Confidence 8999999999999999999988863 489999 999877542 221 11 222334 4668999999998
Q ss_pred eC----cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 79 VK----PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 79 v~----~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
.. +. . +.++.+++..+ .|+.+++..++++.
T Consensus 77 ag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvtNPvD 122 (142)
T d1ojua1 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMD 122 (142)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHH
T ss_pred ccccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEecCChH
Confidence 62 11 1 12233344444 57778887777654
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.49 E-value=5.2e-07 Score=68.28 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=49.0
Q ss_pred CCeEEEEcccHHHHHH--HHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------c----CceeecCchhhhccCCEE
Q 024121 10 SFILGFIGAGKMAESI--AKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------I----GVKVLSDNNAVVEYSDVV 75 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~l--a~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~----g~~~~~~~~~~~~~aDiv 75 (272)
.|||+|||+|..|.+. ...+.....+...+|.++ |+++++++.... . .+..+.|..+++++||+|
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~-Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~V 80 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLM-DIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV 80 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEE-CSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEE-eCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeE
Confidence 4799999999999764 333443322233489999 999987653221 1 234456788999999999
Q ss_pred EEeeC
Q 024121 76 VFSVK 80 (272)
Q Consensus 76 il~v~ 80 (272)
+.+..
T Consensus 81 v~~~~ 85 (171)
T d1obba1 81 INTAM 85 (171)
T ss_dssp EECCC
T ss_pred eeecc
Confidence 99863
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=98.49 E-value=9e-08 Score=72.58 Aligned_cols=87 Identities=13% Similarity=0.099 Sum_probs=61.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
|+.+||||||+|.||+..+..+.+..- .++. ++ +|+++... ..+.....+..+...+.|+|++|+|+....+
T Consensus 1 M~kirvgiiG~G~ig~~~~~~l~~~~~---~elvav~-~~~~~~~~---~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~ 73 (170)
T d1f06a1 1 MTNIRVAIVGYGNLGRSVEKLIAKQPD---MDLVGIF-SRRATLDT---KTPVFDVADVDKHADDVDVLFLCMGSATDIP 73 (170)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSS---EEEEEEE-ESSSCCSS---SSCEEEGGGGGGTTTTCSEEEECSCTTTHHH
T ss_pred CCcceEEEECChHHHHHHHHHHHhCCC---cEEEEEE-eccccccc---ccccccchhhhhhccccceEEEeCCCcccHH
Confidence 466899999999999999999887421 1554 56 88865432 2345555666777789999999999887666
Q ss_pred HHHHhchhcCCCCEEEEE
Q 024121 87 VAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~ 104 (272)
+.... +..|+-+|.+
T Consensus 74 ~a~~a---L~aG~~vv~~ 88 (170)
T d1f06a1 74 EQAPK---FAQFACTVDT 88 (170)
T ss_dssp HHHHH---HTTTSEEECC
T ss_pred HHHHH---HHCCCcEEEe
Confidence 55443 4567666644
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.48 E-value=1.7e-06 Score=63.21 Aligned_cols=95 Identities=22% Similarity=0.348 Sum_probs=63.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH----cC-cee-ecCchhhhccCCEEEEee-
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----IG-VKV-LSDNNAVVEYSDVVVFSV- 79 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~----~g-~~~-~~~~~~~~~~aDivil~v- 79 (272)
.||+|||+|++|+++|..+...|.. +++.++ |+++++++. +.. .+ ..+ ..+..+.+++||+|+++.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~--~ElvL~-D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG 78 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIA--REIVLE-DIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAG 78 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC--SEEEEE-CSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC--cEEEEE-EeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEecc
Confidence 4899999999999999999998873 489999 999877543 222 11 122 233345688999999996
Q ss_pred -C--c-ccH-----------HHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 -K--P-QVV-----------KDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 -~--~-~~~-----------~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
| + +.- +++..++.++ .|+.+++-.++++.
T Consensus 79 ~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~-~p~ai~ivvtNPvD 122 (143)
T d1llda1 79 PRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVD 122 (143)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHH
T ss_pred cccCCCCchhhhhhhhHHHHHHHHHHHHhh-CCCeEEEEeCCchH
Confidence 2 2 111 1233445554 57778776766554
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.48 E-value=6.5e-07 Score=65.54 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=59.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---c------CceeecCchhhhccCCEEEEee--
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I------GVKVLSDNNAVVEYSDVVVFSV-- 79 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~------g~~~~~~~~~~~~~aDivil~v-- 79 (272)
+||+|||+|++|++++..+...+.. +++.++ |+++++++.... + ...+.....+.+++||+|+++.
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~--~el~L~-D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~ 78 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTA--NELVLI-DVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGA 78 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCS--SEEEEE-CCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEeccc
Confidence 5899999999999999999998863 489999 998876432221 1 1223333345688999999984
Q ss_pred Cc--c-c-----------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 KP--Q-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 ~~--~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
+. . . ++++.+++..+ .|+.+++-.++++.
T Consensus 79 ~~~~~~~r~~l~~~N~~i~~~i~~~i~~~-~p~ai~ivvtNPvd 121 (142)
T d1y6ja1 79 NRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNPVD 121 (142)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSSHH
T ss_pred ccCcCcchhHHhhHHHHHHHHHHHHhhcc-CCCceEEEecChHH
Confidence 21 1 1 11233445444 47777777767554
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=98.41 E-value=1.2e-06 Score=69.07 Aligned_cols=97 Identities=21% Similarity=0.247 Sum_probs=64.6
Q ss_pred CeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCc-----eeecCchhhhc--cCCEEEEee
Q 024121 11 FILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGV-----KVLSDNNAVVE--YSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~-----~~~~~~~~~~~--~aDivil~v 79 (272)
.||||||+|.||.. +...+.+. ++ +|. ++ +|++++++.+.+ .|+ ....|.+++++ +.|+|++|+
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~~~~----~ivav~-d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~t 108 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGCQHS----RIEALV-SGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 108 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSE----EEEEEE-CSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred EEEEEEcCcHHHHHHHHHHHHhCCCc----eEEEEe-cCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeecc
Confidence 48999999999974 55555543 33 665 66 999999888776 454 24567788776 589999999
Q ss_pred CcccHHHHHHHhchhcCCCCEEEEEcC--CCCHHHHHHH
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLVSVAA--GVKLKDLQEW 116 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~iis~~~--~~~~~~l~~~ 116 (272)
|++...++..... ..++-|+. -. +.+.+...++
T Consensus 109 p~~~H~~~~~~al---~~gk~v~~-EKPla~~~~e~~~l 143 (221)
T d1h6da1 109 PNSLHAEFAIRAF---KAGKHVMC-EKPMATSVADCQRM 143 (221)
T ss_dssp CGGGHHHHHHHHH---HTTCEEEE-CSSCCSSHHHHHHH
T ss_pred chhhhhhHHHHhh---hcchhhhc-CCCccCCHHHHHHH
Confidence 9887666654443 34454442 23 3345554443
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.40 E-value=1.9e-06 Score=63.46 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=64.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------c--Ccee-ecCchhhhccCCEEEEe
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------I--GVKV-LSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~--g~~~-~~~~~~~~~~aDivil~ 78 (272)
..||+|||+|.+|++++..+...+. .++.++ |+++++++.... . ...+ ..+..+.++++|+|+++
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l---~el~L~-Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvit 78 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNL---GDVVLF-DIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVT 78 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---CEEEEE-CSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---CeEEEE-eccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEe
Confidence 3699999999999999988887764 389999 998876543322 1 1222 23445668999999999
Q ss_pred eC--cc-------------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 79 VK--PQ-------------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 79 v~--~~-------------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
.- .. .++++.+++..+ .|+.+++-.++++.
T Consensus 79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvtNPvD 129 (150)
T d1t2da1 79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVTNPVD 129 (150)
T ss_dssp CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSHH
T ss_pred cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchH
Confidence 62 11 123444555554 57888887777654
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=8.5e-07 Score=65.84 Aligned_cols=100 Identities=11% Similarity=0.097 Sum_probs=72.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-H-
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V- 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~- 84 (272)
+...++++|+|+|.+|..+|+.+...|. +|.+| +++|-++-+..-.|..+. +.++++..+|++++++...+ +
T Consensus 21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~----~V~v~-e~dp~~al~A~~dG~~v~-~~~~a~~~adivvtaTGn~~vI~ 94 (163)
T d1li4a1 21 MIAGKVAVVAGYGDVGKGCAQALRGFGA----RVIIT-EIDPINALQAAMEGYEVT-TMDEACQEGNIFVTTTGCIDIIL 94 (163)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSSCSCSBC
T ss_pred eecCCEEEEeccccccHHHHHHHHhCCC----eeEee-ecccchhHHhhcCceEee-ehhhhhhhccEEEecCCCccchh
Confidence 3456899999999999999999999999 99999 999866444444787774 67888999999999986433 2
Q ss_pred HHHHHHhchhcCCCCEEEEEc---CCCCHHHHHHH
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA---AGVKLKDLQEW 116 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~---~~~~~~~l~~~ 116 (272)
.+-+ +.++++.++.+.. .-+..+.|.+.
T Consensus 95 ~eh~----~~MKdgaIL~N~Ghfd~EId~~~L~~~ 125 (163)
T d1li4a1 95 GRHF----EQMKDDAIVCNIGHFDVEIDVKWLNEN 125 (163)
T ss_dssp HHHH----TTCCTTEEEEECSSSTTSBCHHHHHHH
T ss_pred HHHH----HhccCCeEEEEeccccceecHHHHhhc
Confidence 3333 3356776666542 12345566553
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.35 E-value=2.4e-06 Score=62.46 Aligned_cols=93 Identities=18% Similarity=0.172 Sum_probs=61.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----------cC--ceeecCchhhhccCCEEEEe
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----------IG--VKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----------~g--~~~~~~~~~~~~~aDivil~ 78 (272)
+||+|||+|++|+++|..|...+. .++.++ |.++++++.... .. +..+.+.+ .++++|+|+++
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l---~dl~l~-D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-~~~~advvvit 76 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKEL---GDIVLL-DIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-DTANSDVIVVT 76 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGTTCSEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCc---ceEEEE-eeccccchhHHHHhhccccccCCCCEEEecCcHH-HhcCCCEEEEe
Confidence 589999999999999999988875 278899 988766433221 12 22344544 47899999999
Q ss_pred e--Cc--cc------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 79 V--KP--QV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 79 v--~~--~~------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
. |. .. ++++.+++..+ .|+.+++-.++++.
T Consensus 77 ag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvtNPvD 122 (142)
T d1uxja1 77 SGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVNNPLD 122 (142)
T ss_dssp CSCC---------CHHHHHHHHHHHHHHHGGG-CTTCEEEECSSSHH
T ss_pred eeccCCcCcchhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeCCchH
Confidence 7 21 11 12444556555 46777776666544
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=98.33 E-value=1.4e-06 Score=65.45 Aligned_cols=113 Identities=12% Similarity=0.152 Sum_probs=70.7
Q ss_pred CCCeEEEEcccHHHHHHH-HHHHh-CCCCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeecCchhhhccCCE
Q 024121 9 ESFILGFIGAGKMAESIA-KGVAK-SGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDV 74 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la-~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDi 74 (272)
+..||+|||+|..|.+.. ..++. .-.++..+|.++ |.++++++.... .+ +....|..|++++||+
T Consensus 2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~-Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~ 80 (167)
T d1u8xx1 2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLY-DNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDF 80 (167)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEE-CSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSE
T ss_pred CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEE-cCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCE
Confidence 457899999999887643 23332 211122489999 999988653221 12 3455677888999999
Q ss_pred EEEeeCc------------------------------------ccHHHHHHHhchhcCCCCEEEEEcCCCCH--HHHHHH
Q 024121 75 VVFSVKP------------------------------------QVVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEW 116 (272)
Q Consensus 75 vil~v~~------------------------------------~~~~~v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~ 116 (272)
||++.-. ..+.++.+.+..+ .|+..++..+++... ..+.+.
T Consensus 81 Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~-~P~A~li~~TNPvdv~t~~~~k~ 159 (167)
T d1u8xx1 81 VMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY-SPDAWMLNYSNPAAIVAEATRRL 159 (167)
T ss_dssp EEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSCHHHHHHHHHHH
T ss_pred EEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHHHHHHHHH
Confidence 9999732 1233455555554 588888888776543 334445
Q ss_pred hCCCCEE
Q 024121 117 TGHSRFI 123 (272)
Q Consensus 117 ~~~~~~~ 123 (272)
+|..+++
T Consensus 160 ~P~~rVI 166 (167)
T d1u8xx1 160 RPNSKIL 166 (167)
T ss_dssp STTCCEE
T ss_pred CCccccc
Confidence 5544443
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=98.31 E-value=1.7e-06 Score=64.38 Aligned_cols=94 Identities=12% Similarity=0.157 Sum_probs=57.7
Q ss_pred CCCCCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCHHH--HHHHHHcCceeecC-chhh-----hccCCEEEE
Q 024121 7 PAESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLKR--RDAFESIGVKVLSD-NNAV-----VEYSDVVVF 77 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~~~--~~~l~~~g~~~~~~-~~~~-----~~~aDivil 77 (272)
|.+.+||||||+|.+|.- +...|....+ .++...++|+++. .+...+.|+....+ .+++ ..+.|+||+
T Consensus 1 M~kkirvaIIGaG~ig~~~~~~~l~~~~~---~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ 77 (157)
T d1nvmb1 1 MNQKLKVAIIGSGNIGTDLMIKVLRNAKY---LEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFD 77 (157)
T ss_dssp CCSCEEEEEECCSHHHHHHHHHHHHHCSS---EEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEE
T ss_pred CCCCcEEEEEcCcHHHHHHHHHHHhhCCc---ceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEE
Confidence 345679999999999985 5555544432 2555433888653 23344577765443 2222 246899999
Q ss_pred eeCccc-HHH-HHHHhchhcCCCCEEEEEcC
Q 024121 78 SVKPQV-VKD-VAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 78 ~v~~~~-~~~-v~~~l~~~l~~~~~iis~~~ 106 (272)
|+|... ... ...+ ..+.|..+||.++
T Consensus 78 ATpag~h~~~~~~~~---aa~~G~~VID~s~ 105 (157)
T d1nvmb1 78 ATSASAHVQNEALLR---QAKPGIRLIDLTP 105 (157)
T ss_dssp CSCHHHHHHHHHHHH---HHCTTCEEEECST
T ss_pred cCCchhHHHhHHHHH---HHHcCCEEEEccc
Confidence 999753 322 2211 2467889998764
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=98.29 E-value=3.8e-06 Score=62.80 Aligned_cols=69 Identities=13% Similarity=0.085 Sum_probs=48.6
Q ss_pred CeEEEEcccHHHHHHHHHHHh--CCCCCCCcEEEEeCCCHHHHHHHHH-------c--CceeecCchhhhccCCEEEEee
Q 024121 11 FILGFIGAGKMAESIAKGVAK--SGVLPPDRICTAVHSNLKRRDAFES-------I--GVKVLSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~--~g~~~~~~V~v~~~r~~~~~~~l~~-------~--g~~~~~~~~~~~~~aDivil~v 79 (272)
|||+|||+|..|.+++..... ...+...++.++ |+++++++.... . .+.+..+..+.+++||+|+++.
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~-Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita 79 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFY-DIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQF 79 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEE-CSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEE-ecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEec
Confidence 799999999999887754332 211123489999 999988764332 1 2345566778899999999987
Q ss_pred C
Q 024121 80 K 80 (272)
Q Consensus 80 ~ 80 (272)
-
T Consensus 80 ~ 80 (162)
T d1up7a1 80 R 80 (162)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=98.27 E-value=1.2e-06 Score=66.12 Aligned_cols=93 Identities=12% Similarity=0.192 Sum_probs=65.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----C-ceeecCchhhhccCCEEEEeeCcc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----G-VKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g-~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
.+.++|.|+|+|-.+.+++..|.+.|. +|+++ +|++++++.+.+. + +...........++|+||-|+|..
T Consensus 16 ~~~k~vlIlGaGGaarai~~al~~~g~----~i~I~-nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G 90 (170)
T d1nyta1 16 RPGLRILLIGAGGASRGVLLPLLSLDC----AVTIT-NRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSG 90 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCG
T ss_pred CCCCEEEEECCcHHHHHHHHHhcccce----EEEec-cchHHHHHHHHHHHhhcccccccccccccccccceeecccccC
Confidence 356899999999999999999999998 89999 9999999888761 2 233222222245799999999865
Q ss_pred cHHHHHHHhchhcCCCCEEEEEc
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
...+....-...++++.+++|+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~v~D~v 113 (170)
T d1nyta1 91 ISGDIPAIPSSLIHPGIYCYDMF 113 (170)
T ss_dssp GGTCCCCCCGGGCCTTCEEEESC
T ss_pred cccCCCCCcHHHhccCcEEEEee
Confidence 43221111112356777777764
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.25 E-value=2e-06 Score=63.95 Aligned_cols=97 Identities=12% Similarity=0.233 Sum_probs=63.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH----cC--ceeecCchhhhccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----IG--VKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~----~g--~~~~~~~~~~~~~aDivil~ 78 (272)
+..||+|||+|++|+++|..|...|+. +++.++ |+++++++. +.. .+ .....+..+.++++|+|+++
T Consensus 18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~--~elvL~-D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvit 94 (159)
T d2ldxa1 18 SRCKITVVGVGDVGMACAISILLKGLA--DELALV-DADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIIT 94 (159)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTSC--SEEEEE-CSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEEC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEe
Confidence 345899999999999999999998863 489999 999876542 322 11 12223334557899999998
Q ss_pred eC----cc-----cHH---HHHH----HhchhcCCCCEEEEEcCCCC
Q 024121 79 VK----PQ-----VVK---DVAM----QIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 79 v~----~~-----~~~---~v~~----~l~~~l~~~~~iis~~~~~~ 109 (272)
.- +. .+. +++. ++..+ .|+.+++..++++.
T Consensus 95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~-~p~~ivivvtNPvD 140 (159)
T d2ldxa1 95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQN-SPDCKIIVVTNPVD 140 (159)
T ss_dssp CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHH-STTCEEEECSSSHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHhcc-CCCeEEEEeCCcHH
Confidence 62 11 111 2333 33333 57778887777544
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=98.25 E-value=7.9e-07 Score=67.25 Aligned_cols=94 Identities=11% Similarity=0.145 Sum_probs=62.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c----CceeecCchhhhccCCEEEEeeCc
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----GVKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~----g~~~~~~~~~~~~~aDivil~v~~ 81 (272)
..+.++|.|+|+|-++.+++..|.+.+. +|+++ +|++++++.+.+ . .+...........++|+||-|+|.
T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~~~~~----~i~I~-nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~ 89 (171)
T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLLQAQQ----NIVLA-NRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSA 89 (171)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTTC----EEEEE-ESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC
T ss_pred CCCCCEEEEECCcHHHHHHHHHHcccCc----eeeec-cchHHHHHHHHHHHhhccccchhhhccccccccceeeecccc
Confidence 3456899999999999999999998655 99999 999999988876 1 233333223345789999999987
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEc
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
..-..........++++.++++..
T Consensus 90 g~~~~~~~~~~~~~~~~~~~~D~v 113 (171)
T d1p77a1 90 GLSGGTASVDAEILKLGSAFYDMQ 113 (171)
T ss_dssp -------CCCHHHHHHCSCEEESC
T ss_pred cccccccchhhhhhcccceeeeee
Confidence 643332211122244566777654
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.21 E-value=3.7e-06 Score=63.29 Aligned_cols=112 Identities=13% Similarity=0.207 Sum_probs=68.6
Q ss_pred CeEEEEcccHHHH--HHHHHHHhCCCCCCCcEEEEeCCCHHH--HHHHH--------HcCc----eeecCchhhhccCCE
Q 024121 11 FILGFIGAGKMAE--SIAKGVAKSGVLPPDRICTAVHSNLKR--RDAFE--------SIGV----KVLSDNNAVVEYSDV 74 (272)
Q Consensus 11 ~~IgiIG~G~mG~--~la~~l~~~g~~~~~~V~v~~~r~~~~--~~~l~--------~~g~----~~~~~~~~~~~~aDi 74 (272)
|||+|||+|+.|. .++.-+.....++..++.++ |+++++ .+.+. ..+. ...+|..+.+++||+
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~-Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDv 80 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLV-DIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF 80 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEE-CCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEE-cCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCE
Confidence 7999999997764 34444443322223488999 998743 32221 1222 245666788899999
Q ss_pred EEEeeCccc------------------------------------HHHHHHHhchhcCCCCEEEEEcCCCCH--HHHHHH
Q 024121 75 VVFSVKPQV------------------------------------VKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEW 116 (272)
Q Consensus 75 vil~v~~~~------------------------------------~~~v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~ 116 (272)
|+++..... ++++.+.+..+ .|+.+++..++++.. ..+.+.
T Consensus 81 Vv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~-~pda~~i~vtNPvdv~t~~~~k~ 159 (169)
T d1s6ya1 81 VTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTNPAGMVTEAVLRY 159 (169)
T ss_dssp EEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHHHH
T ss_pred EEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhc-CCCeEEEEeCChHHHHHHHHHHH
Confidence 999984221 35556666665 588888888887553 234445
Q ss_pred hCCCCEEE
Q 024121 117 TGHSRFIR 124 (272)
Q Consensus 117 ~~~~~~~~ 124 (272)
.|..++++
T Consensus 160 ~p~~kviG 167 (169)
T d1s6ya1 160 TKQEKVVG 167 (169)
T ss_dssp CCCCCEEE
T ss_pred CCCCCEEe
Confidence 55445554
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.20 E-value=2.8e-06 Score=62.15 Aligned_cols=94 Identities=16% Similarity=0.206 Sum_probs=63.9
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC------ce--e-ecCchhhhccCCEEEEee--
Q 024121 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG------VK--V-LSDNNAVVEYSDVVVFSV-- 79 (272)
Q Consensus 12 ~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g------~~--~-~~~~~~~~~~aDivil~v-- 79 (272)
||+|||+ |++|++++..|...|.. .++.++ |.++.+.+.+--.. .. + ..+..+.+++||+|+++-
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~--~elvLi-Di~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~ 78 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLV--SRLTLY-DIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV 78 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTC--SEEEEE-ESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred eEEEECCCChHHHHHHHHHHhCCcc--ceEEEE-eccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCc
Confidence 8999995 99999999999988863 389999 98876544332211 11 1 234457789999999985
Q ss_pred C--c-c-----------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 K--P-Q-----------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 ~--~-~-----------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
| + + .++++.+++..+ .|+.+++-.++++.
T Consensus 79 ~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvD 121 (144)
T d1mlda1 79 PRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVN 121 (144)
T ss_dssp CCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHH
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchh
Confidence 2 1 1 123455566666 57778887777655
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=6.4e-07 Score=69.67 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=54.1
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-------cCchhhhccCCEEEEee
Q 024121 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDivil~v 79 (272)
|.++||.|+| +|.+|++++..|+++|| +|.+. .|++++.......++++. .+..++++++|+||.++
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~----~V~~~-~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~ 75 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGY----EVTVL-VRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL 75 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcC----EEEEE-EcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEe
Confidence 5788999998 59999999999999999 99999 999988655444455432 22356688999999987
Q ss_pred C
Q 024121 80 K 80 (272)
Q Consensus 80 ~ 80 (272)
.
T Consensus 76 g 76 (205)
T d1hdoa_ 76 G 76 (205)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=98.16 E-value=3.8e-06 Score=56.90 Aligned_cols=71 Identities=23% Similarity=0.262 Sum_probs=56.3
Q ss_pred CCCCCCCCeEEEEcccHHH-HHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHHHHHcCceeec-CchhhhccCCEEEEee
Q 024121 4 FPIPAESFILGFIGAGKMA-ESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFESIGVKVLS-DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG-~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~~~g~~~~~-~~~~~~~~aDivil~v 79 (272)
.|.+...+||-|||.|-.| +++|+.|.+.|+ +|+++ |+. ....+.+.+.|+.+.. ...+-+.+.|+|+..-
T Consensus 2 ~~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~----~VsGS-D~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~ 75 (96)
T d1p3da1 2 IPEMRRVQQIHFIGIGGAGMSGIAEILLNEGY----QISGS-DIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSS 75 (96)
T ss_dssp CCCCTTCCEEEEETTTSTTHHHHHHHHHHHTC----EEEEE-ESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECT
T ss_pred CccchhCCEEEEEEECHHHHHHHHHHHHhCCC----EEEEE-eCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECC
Confidence 4667778999999999999 778999999999 99999 875 3556778788887643 3344467899888774
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=1.6e-06 Score=63.59 Aligned_cols=97 Identities=12% Similarity=0.135 Sum_probs=61.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH--HHHcCcee-ecCchhhhccCCEEEEeeCcccHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA--FESIGVKV-LSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~--l~~~g~~~-~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
|+||||||+ |..|+-+.+.|+++...+..+++.+ .++...-.. ........ .....+...++|++|+|+|.+...
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~-~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~ 79 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFF-STSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTN 79 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEE-ESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHH
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEe-eccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHH
Confidence 468999988 9999999998887643344566666 433221111 11111111 122234578999999999988888
Q ss_pred HHHHHhchhcCCCCEEEEEcCCC
Q 024121 86 DVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
++...+... ..+.+|||.++..
T Consensus 80 ~~~~~~~~~-g~~~~VID~Ss~f 101 (146)
T d1t4ba1 80 EIYPKLRES-GWQGYWIDAASSL 101 (146)
T ss_dssp HHHHHHHHT-TCCCEEEECSSTT
T ss_pred HhhHHHHhc-CCCeecccCCccc
Confidence 887776543 2345788886653
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=98.14 E-value=1.3e-06 Score=72.95 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=67.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCc--eeecCchhhhccCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV--KVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~--~~~~~~~~~~~~aDivil~v~~ 81 (272)
+..+++|||+|..+..-+..+... .+..+|.+| +|++++.+++.+ .|+ .++.+.+++++.||+|++|+..
T Consensus 127 da~~l~iiG~G~QA~~~~~a~~~v--~~i~~V~v~-~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas 203 (340)
T d1x7da_ 127 NARKMALIGNGAQSEFQALAFHKH--LGIEEIVAY-DTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTAD 203 (340)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHH--SCCCEEEEE-CSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCC
T ss_pred CCceEEEEcccHHHHHHHHHHhhh--cceeeeEEE-ecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeecccc
Confidence 567899999999999988888764 245699999 999998877765 354 4578889999999999999854
Q ss_pred ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
..-..++.. ..++|+..|..+
T Consensus 204 ~s~~Pv~~~--~~l~pG~hI~ai 224 (340)
T d1x7da_ 204 KAYATIITP--DMLEPGMHLNAV 224 (340)
T ss_dssp SSEEEEECG--GGCCTTCEEEEC
T ss_pred CCCCcccch--hhcCCCCEEeec
Confidence 322222221 346788766543
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.12 E-value=5.2e-06 Score=69.01 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=68.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cCceeecCchhhhccCCEEEEeeCcccH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g~~~~~~~~~~~~~aDivil~v~~~~~ 84 (272)
+..+++|||+|..+..-+..+... + +..+|.+| +|++++++.+.+ .++.+..+..+++.+||+|+.|++...
T Consensus 124 ~~~~l~iiGaG~QA~~~~~al~~~-~-~i~~i~v~-~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~- 199 (320)
T d1omoa_ 124 NSSVFGFIGCGTQAYFQLEALRRV-F-DIGEVKAY-DVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRK- 199 (320)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHH-S-CCCEEEEE-CSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSS-
T ss_pred CccEEEEecCcccHHHHHHHHHHH-h-hhhhcccc-cCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCcc-
Confidence 457899999999999999988764 2 45699999 999999877765 566677788888999999999997532
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.++. ...+++|..|..+
T Consensus 200 -P~~~--~~~l~~G~hv~~i 216 (320)
T d1omoa_ 200 -PVVK--AEWVEEGTHINAI 216 (320)
T ss_dssp -CCBC--GGGCCTTCEEEEC
T ss_pred -cccc--hhhcCCCCeEeec
Confidence 1111 1346788877755
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.09 E-value=3.8e-06 Score=62.42 Aligned_cols=91 Identities=18% Similarity=0.223 Sum_probs=67.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc---Cceeec----CchhhhccCCEEEEee--C
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---GVKVLS----DNNAVVEYSDVVVFSV--K 80 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~---g~~~~~----~~~~~~~~aDivil~v--~ 80 (272)
.-|+.|||.|..|..=++.....|- +|+++ |.++++.+++... .+.... ...+.++++|+||-++ |
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA----~V~~~-D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalip 106 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGA----QVQIF-DINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVP 106 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred CcEEEEECCChHHHHHHHHHhhCCC----EEEEE-eCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecC
Confidence 3589999999999999888889998 99999 9999999888772 233322 2356688999999997 3
Q ss_pred cccHHHHH-HHhchhcCCCCEEEEEc
Q 024121 81 PQVVKDVA-MQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 81 ~~~~~~v~-~~l~~~l~~~~~iis~~ 105 (272)
-.....++ +++...++|+.+|||++
T Consensus 107 G~~aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 107 GRRAPILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp TSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CcccCeeecHHHHhhcCCCcEEEEee
Confidence 33322222 23445578999999874
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=98.09 E-value=5.5e-06 Score=62.20 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=54.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~ 81 (272)
..++|.|||+|-.+.+++..|.+.|. .+|+++ +|++++.+.+.+ .+.....+.. ..++|+||=|+|.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~---~~I~I~-nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpi 83 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGF---EKLKIY-ARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSI 83 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTC---CCEEEE-CSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSST
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC---CEEEEe-cccHHHHHHHHHhhhhhhhhccc--ccchhhheecccc
Confidence 45789999999999999999999986 379999 999999998877 5554433322 3579999999884
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=98.07 E-value=8.9e-06 Score=64.58 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=53.7
Q ss_pred CCCeEEEEcccHHHH----HHHHHHHhC--CCCCCCcEE-EEeCCCHHHHHHHHH-cC---ceeecCchhhhc--cCCEE
Q 024121 9 ESFILGFIGAGKMAE----SIAKGVAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IG---VKVLSDNNAVVE--YSDVV 75 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~----~la~~l~~~--g~~~~~~V~-v~~~r~~~~~~~l~~-~g---~~~~~~~~~~~~--~aDiv 75 (272)
+.+||||||+|.+|. .....+.+. ++ +|. ++ ++++++++.+.+ .+ .....+.+++++ +-|+|
T Consensus 15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~----~ivav~-d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V 89 (237)
T d2nvwa1 15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQF----QIVALY-NPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMI 89 (237)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTE----EEEEEE-CSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEE
T ss_pred CCeEEEEEecCccccHHHHHHHHHHHhcCCCe----EEEEEE-cCCHHHHHHHHHhcccccceeecchhhccccccccee
Confidence 457999999998544 334445442 34 665 67 999998887766 44 345678888775 57899
Q ss_pred EEeeCcccHHHHHHH
Q 024121 76 VFSVKPQVVKDVAMQ 90 (272)
Q Consensus 76 il~v~~~~~~~v~~~ 90 (272)
++|+|+....+....
T Consensus 90 ~i~tp~~~h~~~~~~ 104 (237)
T d2nvwa1 90 VVSVKVPEHYEVVKN 104 (237)
T ss_dssp EECSCHHHHHHHHHH
T ss_pred eccCCCcchhhHHHH
Confidence 999998765555443
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=98.07 E-value=1.1e-05 Score=59.52 Aligned_cols=88 Identities=11% Similarity=0.124 Sum_probs=67.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-H-
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V- 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~- 84 (272)
+...+++.++|+|-.|..+|.++...|. +|+++ .++|-++-+..-.|.++ .+.+++++.+|++|.++.... +
T Consensus 20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga----~V~V~-E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn~~vI~ 93 (163)
T d1v8ba1 20 LISGKIVVICGYGDVGKGCASSMKGLGA----RVYIT-EIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVDVIK 93 (163)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTC----EEEEE-CSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSSSBC
T ss_pred eecCCEEEEecccccchhHHHHHHhCCC----EEEEE-ecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCCCcccc
Confidence 3456799999999999999999999998 99999 99995543333378887 477899999999999996543 2
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.+-++ .++++.++.+.
T Consensus 94 ~~h~~----~MKdgaIl~N~ 109 (163)
T d1v8ba1 94 LEHLL----KMKNNAVVGNI 109 (163)
T ss_dssp HHHHT----TCCTTCEEEEC
T ss_pred HHHHH----HhhCCeEEEec
Confidence 33333 35677666653
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=1e-05 Score=59.08 Aligned_cols=94 Identities=19% Similarity=0.257 Sum_probs=59.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHH----HHHHc----Cce--eecCchhhhccCCEEEEe
Q 024121 11 FILGFIG-AGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRD----AFESI----GVK--VLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~~----~l~~~----g~~--~~~~~~~~~~~aDivil~ 78 (272)
|||+||| .|++|++++..|.. .+. ..++.++ |..+ ..+ ++... ... ...+..+.++++|+||++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~--~~el~L~-D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvit 76 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPS--GSELSLY-DIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLIS 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCT--TCEEEEE-CSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCC--CcEEEEe-cccc-cchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEEC
Confidence 7999999 59999999988754 343 2389999 8865 332 22221 111 113345568899999998
Q ss_pred e--C--cc------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 79 V--K--PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 79 v--~--~~------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
- | +. .++++.+++.++ .|+.+++-.++++.
T Consensus 77 aG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~-~p~aivivvtNPvD 122 (145)
T d2cmda1 77 AGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNPVN 122 (145)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSHH
T ss_pred CCccCCCCcchhhHHHHHHHHHHHHHHHHHhh-CCCcEEEEccCCch
Confidence 6 2 11 123444556655 47778887777654
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=98.05 E-value=1.3e-05 Score=55.95 Aligned_cols=97 Identities=13% Similarity=0.227 Sum_probs=64.9
Q ss_pred CCCCCCCC--CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHH-cCceeec--CchhhhccCCE
Q 024121 1 MDAFPIPA--ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVKVLS--DNNAVVEYSDV 74 (272)
Q Consensus 1 ~~~~~~~~--~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~-~g~~~~~--~~~~~~~~aDi 74 (272)
|..+|... +.++|.|||.|.+|..-++.|++.|. +|+++ +... +....+.+ .++.... -..+.+.++++
T Consensus 1 M~~~Pi~l~l~~k~vlVvG~G~va~~ka~~ll~~ga----~v~v~-~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~l 75 (113)
T d1pjqa1 1 MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLEAGA----RLTVN-ALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWL 75 (113)
T ss_dssp CCCEEEEECCBTCEEEEECCSHHHHHHHHHHHHTTB----EEEEE-ESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSE
T ss_pred CCccceEEEeCCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-eccCChHHHHHHhcCCceeeccCCCHHHhCCCcE
Confidence 66677654 45899999999999999999999998 99999 6543 23334444 3444322 12344778999
Q ss_pred EEEeeCcccHHHHHHHhchhcCCCCEEEEEc
Q 024121 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 75 vil~v~~~~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
|+.|+.+..+..-+.+.. ++..++|++.
T Consensus 76 v~~at~d~~~n~~i~~~a---~~~~ilVNv~ 103 (113)
T d1pjqa1 76 AIAATDDDTVNQRVSDAA---ESRRIFCNVV 103 (113)
T ss_dssp EEECCSCHHHHHHHHHHH---HHTTCEEEET
T ss_pred EeecCCCHHHHHHHHHHH---HHcCCEEEeC
Confidence 999988777654333322 2334667653
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.04 E-value=8.2e-06 Score=57.27 Aligned_cols=95 Identities=23% Similarity=0.337 Sum_probs=72.0
Q ss_pred CeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 11 FILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
++|+|||+ |+.|..+.++|.+.|| +|+.. +++.+.. .|..+..+..++-...|++++++|++.+.+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~----~V~pV-nP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~vp~~~~~~ 71 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGF----EVLPV-NPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPPKVGLQ 71 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTC----EEEEE-CTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCHHHHHH
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCC----EEEEE-ccccccc-----cCccccccchhccccceEEEEEeCHHHHHH
Confidence 57999995 8999999999999999 88888 7654322 588888888887778899999999999999
Q ss_pred HHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG 118 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~ 118 (272)
++++.... ....++ +..|...+.+.+.+.
T Consensus 72 ~l~~~~~~-g~k~v~--~~~g~~~~~~~~~a~ 100 (116)
T d1y81a1 72 VAKEAVEA-GFKKLW--FQPGAESEEIRRFLE 100 (116)
T ss_dssp HHHHHHHT-TCCEEE--ECTTSCCHHHHHHHH
T ss_pred HHHHHHhc-CCceEE--eccchhhHHHHHHHH
Confidence 99886543 233333 345655555555443
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=98.04 E-value=2.3e-06 Score=62.63 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=59.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
|||||||+ |..|+-+.+.|.++...+..++.....++. .+.-.+.. ..........+..+++|++|+|+|.....++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s~~~ 80 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEKV 80 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHHHHH
Confidence 79999987 999999999887643213335554413221 11100000 1111112223557899999999999988888
Q ss_pred HHHhchhcCCCCEEEEEcCCC
Q 024121 88 AMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~ 108 (272)
.+.+... .....|||.++..
T Consensus 81 ~~~l~~~-g~~~~VIDlSsdf 100 (147)
T d1mb4a1 81 YPALRQA-GWKGYWIDAASTL 100 (147)
T ss_dssp HHHHHHT-TCCSEEEESSSTT
T ss_pred hHHHHHc-CCceEEEeCCccc
Confidence 8776543 2345799987654
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.01 E-value=1.4e-05 Score=58.27 Aligned_cols=66 Identities=18% Similarity=0.301 Sum_probs=46.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHH----HHHH------cCcee---ecCchhhhccCCE
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRD----AFES------IGVKV---LSDNNAVVEYSDV 74 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~----~l~~------~g~~~---~~~~~~~~~~aDi 74 (272)
|||+|||+ |++|++++..|...+.. .++.++ |+++. +++ ++.. ...++ ..+..+.+++||+
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~--~el~L~-D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDv 77 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFM--KDLVLI-GREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDV 77 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTC--CEEEEE-ECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcc--cccccc-cchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceE
Confidence 79999995 99999999999998853 389999 98753 222 2222 12222 1233456889999
Q ss_pred EEEee
Q 024121 75 VVFSV 79 (272)
Q Consensus 75 vil~v 79 (272)
|+++.
T Consensus 78 VVitA 82 (145)
T d1hyea1 78 VIITS 82 (145)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99984
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=98.00 E-value=3.8e-05 Score=55.73 Aligned_cols=95 Identities=15% Similarity=0.192 Sum_probs=60.1
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH--HHHH----HHHH-----cCceeecCchhhhccCCEEEEe
Q 024121 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRD----AFES-----IGVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~----~l~~-----~g~~~~~~~~~~~~~aDivil~ 78 (272)
.||+||| +|++|+++|..+...+.. .++.++ |++. +.++ ++.. ....+.....+.+++||+|+++
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~--~el~L~-Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvit 77 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIA--DEVVFV-DIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVIT 77 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCC--SEEEEE-CCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEEC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCC--CEEEEE-ecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEe
Confidence 3899999 699999999999998873 379999 8643 3322 2221 1223333334557899999998
Q ss_pred e--C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 79 V--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 79 v--~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
- | +. . ++++.+++..+ .|+.+++-.++++.
T Consensus 78 aG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~-~p~~i~ivvtNPvD 123 (142)
T d1o6za1 78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVD 123 (142)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSSHH
T ss_pred cccccccCCchhhHHHHHHHHHHHHHHHHHhc-CCCceEEEecChHH
Confidence 5 2 22 1 12233445444 46777777766554
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.99 E-value=1.7e-05 Score=61.12 Aligned_cols=99 Identities=16% Similarity=0.215 Sum_probs=71.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhc-cCCEEEEeeCcccH-H
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVFSVKPQVV-K 85 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDivil~v~~~~~-~ 85 (272)
.+.+||+|.|+|++|..+++.|.+.|. +|+++ +.++++.......|..... .++++. +||+++.|-....+ .
T Consensus 25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga----kvvv~-d~d~~~~~~~~~~g~~~~~-~~~~~~~~~DI~iPcA~~~~I~~ 98 (201)
T d1c1da1 25 LDGLTVLVQGLGAVGGSLASLAAEAGA----QLLVA-DTDTERVAHAVALGHTAVA-LEDVLSTPCDVFAPCAMGGVITT 98 (201)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEECC-GGGGGGCCCSEEEECSCSCCBCH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEe-cchHHHHHHHHhhcccccC-ccccccccceeeecccccccccH
Confidence 567899999999999999999999999 99999 9999998888888877654 455544 89999988654444 4
Q ss_pred HHHHHhchhcCCCCEEEEEcCC-CCHHHHHHHh
Q 024121 86 DVAMQIRPLLSRKKLLVSVAAG-VKLKDLQEWT 117 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~~-~~~~~l~~~~ 117 (272)
+..+.+. -++|+.-.++ ++.+...+.+
T Consensus 99 ~~a~~i~-----ak~i~e~AN~p~~~~~~~~~L 126 (201)
T d1c1da1 99 EVARTLD-----CSVVAGAANNVIADEAASDIL 126 (201)
T ss_dssp HHHHHCC-----CSEECCSCTTCBCSHHHHHHH
T ss_pred HHHhhhh-----hheeeccCCCCcchhhHHHHh
Confidence 4555442 3566654443 3334344444
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=97.99 E-value=1.2e-05 Score=53.52 Aligned_cols=65 Identities=14% Similarity=0.253 Sum_probs=52.1
Q ss_pred CCeEEEEcccHHHH-HHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcCceeec-CchhhhccCCEEEEee
Q 024121 10 SFILGFIGAGKMAE-SIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLS-DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 10 ~~~IgiIG~G~mG~-~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~~-~~~~~~~~aDivil~v 79 (272)
.|||-|||.|-+|. ++|+.|.+.|+ .|.++ |+.+ +..++|.+.|+.+.. ...+-+.++|+|+..-
T Consensus 1 ~~~ihfiGIgG~GMs~LA~~L~~~G~----~VsGS-D~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~Ss 68 (89)
T d1j6ua1 1 HMKIHFVGIGGIGMSAVALHEFSNGN----DVYGS-NIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTP 68 (89)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-CSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECT
T ss_pred CcEEEEEeECHHHHHHHHHHHHhCCC----eEEEE-eCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEec
Confidence 48999999999996 78999999999 99999 8875 556778889987642 2234467899998774
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.97 E-value=2.1e-05 Score=56.12 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=59.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~ 89 (272)
|||+|.|+ |+||+.+...+.+.++ ++....+++ ..+.+.++|+||=-+.|+.+.+.++
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~----~l~~~id~~-----------------~~~~~~~~DVvIDFS~p~~~~~~l~ 59 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGH----ELVLKVDVN-----------------GVEELDSPDVVIDFSSPEALPKTVD 59 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEEETT-----------------EEEECSCCSEEEECSCGGGHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCC----eEEEEECCC-----------------cHHHhccCCEEEEecCHHHHHHHHH
Confidence 79999996 9999999998888888 765432432 1233567999998888998888887
Q ss_pred HhchhcCCCCEEEEEcCCCCHHHHHH
Q 024121 90 QIRPLLSRKKLLVSVAAGVKLKDLQE 115 (272)
Q Consensus 90 ~l~~~l~~~~~iis~~~~~~~~~l~~ 115 (272)
.... .+..+|..++|.+.++++.
T Consensus 60 ~~~~---~~~p~ViGTTG~~~~~~~~ 82 (128)
T d1vm6a3 60 LCKK---YRAGLVLGTTALKEEHLQM 82 (128)
T ss_dssp HHHH---HTCEEEECCCSCCHHHHHH
T ss_pred HHHh---cCCCEEEEcCCCCHHHHHH
Confidence 6543 3456777778888766544
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.90 E-value=1.2e-05 Score=60.43 Aligned_cols=90 Identities=10% Similarity=0.147 Sum_probs=65.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeec---------------------------
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS--------------------------- 63 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~--------------------------- 63 (272)
-++.|||+|..|..=++-...-|. .|+++ |.++++.+++.+.+.....
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA----~V~v~-D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~ 104 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGA----VVMAT-DVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ 104 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCSTTHHHHHHTTCEECCC-----------------------CCH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCC----EEEEE-eccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHH
Confidence 489999999999988888888898 99999 9999999988885532211
Q ss_pred --CchhhhccCCEEEEee--CcccHHHHH-HHhchhcCCCCEEEEEc
Q 024121 64 --DNNAVVEYSDVVVFSV--KPQVVKDVA-MQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 64 --~~~~~~~~aDivil~v--~~~~~~~v~-~~l~~~l~~~~~iis~~ 105 (272)
...+.+.++|+||.++ |-.....++ +++...++||.+|||++
T Consensus 105 ~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 105 AEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp HHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 0123467899999987 333222222 33445578999999874
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.88 E-value=1.4e-05 Score=57.84 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=71.2
Q ss_pred CeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 11 FILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
++|+|||+ ++.|..+.++|.+.|| +|+.. |+..... .|..+..+..++-...|++++++|++.+.+
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~----~v~pV-nP~~~~i-----~G~~~~~sl~dlp~~iD~v~i~vp~~~~~~ 89 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHGY----DVYPV-NPKYEEV-----LGRKCYPSVLDIPDKIEVVDLFVKPKLTME 89 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTC----EEEEE-CTTCSEE-----TTEECBSSGGGCSSCCSEEEECSCHHHHHH
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCCC----EEEEE-CCccccc-----CCCcccccccccCccceEEEEEeCHHHHHH
Confidence 67999997 7899999999999999 99888 6643211 578888888887778999999999999999
Q ss_pred HHHHhchhcCCCCEEEEEcCCCCHHHHHHHh
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~ 117 (272)
+++++... ... .+.+..|...+.+.+..
T Consensus 90 ~~~e~~~~-g~k--~v~~~~G~~~ee~~~~a 117 (139)
T d2d59a1 90 YVEQAIKK-GAK--VVWFQYNTYNREASKKA 117 (139)
T ss_dssp HHHHHHHH-TCS--EEEECTTCCCHHHHHHH
T ss_pred HHHHHHHh-CCC--EEEEeccccCHHHHHHH
Confidence 99887653 233 33345555444444443
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.86 E-value=1.4e-05 Score=59.03 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=46.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCC---cEEEE-eCCCHHHHHHHHH----------cCceeecCchhhhccCC
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPD---RICTA-VHSNLKRRDAFES----------IGVKVLSDNNAVVEYSD 73 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~---~V~v~-~~r~~~~~~~l~~----------~g~~~~~~~~~~~~~aD 73 (272)
..|||+|||+ |.+|++++..|...++.... .+.++ .+++.++.+.... .++....+..+.++++|
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 82 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDAD 82 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccccc
Confidence 4579999996 99999999999987653321 12333 0334444433221 12344556677899999
Q ss_pred EEEEee
Q 024121 74 VVVFSV 79 (272)
Q Consensus 74 ivil~v 79 (272)
+|+++-
T Consensus 83 vViita 88 (154)
T d1y7ta1 83 YALLVG 88 (154)
T ss_dssp EEEECC
T ss_pred EEEeec
Confidence 999986
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=9.4e-06 Score=54.60 Aligned_cols=65 Identities=20% Similarity=0.106 Sum_probs=45.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHHcCcee--ecCchhhhccCCEEEEe
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESIGVKV--LSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~~g~~~--~~~~~~~~~~aDivil~ 78 (272)
.+.+||.|+|+|..|.+.++.|.+.|+ +|++| |.+.. ..+.+. .+... .....+.+.+.|+||++
T Consensus 3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~----~v~~~-D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~vi~S 71 (93)
T d2jfga1 3 YQGKNVVIIGLGLTGLSCVDFFLARGV----TPRVM-DTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVAS 71 (93)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTC----CCEEE-ESSSSCTTGGGSC-TTSCEEESBCCHHHHHHCSEEEEC
T ss_pred cCCCEEEEEeECHHHHHHHHHHHHCCC----EEEEe-eCCcCchhHHHHh-hccceeecccchhhhccCCEEEEC
Confidence 456899999999999999999999999 99999 76432 222222 22222 12234556778888876
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.83 E-value=7.5e-06 Score=59.84 Aligned_cols=95 Identities=12% Similarity=0.201 Sum_probs=61.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--cCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
+.|+|||||+ |..|.-+.+.|.+..| +..++.....++... +.+.. ..........+...++|++|+|+|.....
T Consensus 1 q~mnVaIvGATGyvG~eli~lL~~~~h-P~~~l~~~~s~~~~G-k~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~ 78 (144)
T d2hjsa1 1 QPLNVAVVGATGSVGEALVGLLDERDF-PLHRLHLLASAESAG-QRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSR 78 (144)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTC-CCSCEEEEECTTTTT-CEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCC-CceEEEEEeecccCC-cceeeccccchhccchhhhhccceEEEecCCcchhh
Confidence 3589999988 9999999998876666 545676542332211 11100 11122222234467899999999988877
Q ss_pred HHHHHhchhcCCCCEEEEEcCCC
Q 024121 86 DVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
+....+. ..+..|||.++..
T Consensus 79 ~~~~~~~---~~g~~VID~Ss~f 98 (144)
T d2hjsa1 79 AHAERAR---AAGCSVIDLSGAL 98 (144)
T ss_dssp HHHHHHH---HTTCEEEETTCTT
T ss_pred hhccccc---cCCceEEeechhh
Confidence 7776654 4678899876654
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.73 E-value=4.3e-05 Score=54.49 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=66.7
Q ss_pred CCCeEEEEcc----cHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc
Q 024121 9 ESFILGFIGA----GKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 9 ~~~~IgiIG~----G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~ 83 (272)
+.++|++||+ |.+|..+.++|.+.| + +|+.. |++.+.. .|.....+..|+-...|++++++|++.
T Consensus 7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g----~v~pV-nP~~~~i-----~G~~~y~sl~dlp~~vDlvvi~vp~~~ 76 (129)
T d2csua1 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKG----KVYPV-NIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPKRF 76 (129)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCCSS----EEEEE-CSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCHHH
T ss_pred CCCeEEEEccCCCCCCcHHHHHHHHHHcCCC----cEEEe-ccCcccc-----CCeEeecchhhcCCCCceEEEecChHH
Confidence 3478999997 999999999987765 4 88888 7654322 588888888888778999999999999
Q ss_pred HHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
+.+++++.... .-..+++ .++|.
T Consensus 77 ~~~~~~~~~~~-g~~~~vi-~s~Gf 99 (129)
T d2csua1 77 VKDTLIQCGEK-GVKGVVI-ITAGF 99 (129)
T ss_dssp HHHHHHHHHHH-TCCEEEE-CCCSS
T ss_pred hHHHHHHHHHc-CCCEEEE-ecccc
Confidence 99999887653 2222333 44554
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.71 E-value=4.9e-05 Score=57.29 Aligned_cols=73 Identities=15% Similarity=0.164 Sum_probs=47.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-HHHHHc-----------------CceeecCchhhhcc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-DAFESI-----------------GVKVLSDNNAVVEY 71 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~-~~l~~~-----------------g~~~~~~~~~~~~~ 71 (272)
|.||||.|+|+||+.+.+.+.+.+- -+|...+++++... ..+... ++.+..+..+...+
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~~d---ievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~ 77 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQPD---MKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKT 77 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTT---EEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCC---CEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhc
Confidence 4589999999999999999997642 26665546665332 222221 22333344555668
Q ss_pred CCEEEEeeCcccHH
Q 024121 72 SDVVVFSVKPQVVK 85 (272)
Q Consensus 72 aDivil~v~~~~~~ 85 (272)
+|+|+-|++...-.
T Consensus 78 vDiViecTG~f~~~ 91 (178)
T d1b7go1 78 SDIVVDTTPNGVGA 91 (178)
T ss_dssp CSEEEECCSTTHHH
T ss_pred CCEEEECCCCcCCH
Confidence 89999998865433
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=1.8e-05 Score=58.91 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=67.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHH-----HH---HHHcCceeecCchhhhccCCEEEEe
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRR-----DA---FESIGVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~-----~~---l~~~g~~~~~~~~~~~~~aDivil~ 78 (272)
+.+||+|+|+ |+||+.+++.+.+..-+ ++. ++ +|..... .. ....++.+..+.+++.+++|+||=-
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~---~lv~~~-~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDF 78 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGV---QLGAAL-EREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDF 78 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTE---ECCCEE-CCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCC---EEEEEE-ecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEe
Confidence 4689999996 99999999988875321 443 44 5533211 00 1113556677778888899999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHH
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~ 115 (272)
+.|+...+.++... +.+.-+|.-++|.+.++++.
T Consensus 79 s~p~~~~~~~~~a~---~~~~~~ViGTTG~~~~~~~~ 112 (162)
T d1diha1 79 TRPEGTLNHLAFCR---QHGKGMVIGTTGFDEAGKQA 112 (162)
T ss_dssp SCHHHHHHHHHHHH---HTTCEEEECCCCCCHHHHHH
T ss_pred ccHHHHHHHHHHHH---hccceeEEecCCCcHHHHHH
Confidence 88888887776543 34566676778888765544
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.65 E-value=0.00012 Score=53.83 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=47.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCC---CCCcEEEEeCCCH--HHHHHHHH---c-------CceeecCchhhhccC
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVL---PPDRICTAVHSNL--KRRDAFES---I-------GVKVLSDNNAVVEYS 72 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~---~~~~V~v~~~r~~--~~~~~l~~---~-------g~~~~~~~~~~~~~a 72 (272)
+.+||+|||+ |++|++++..|...+.+ ...++..+ |.+. ++++.+.- . .+....+..+.++++
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~-d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLL-DITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDL 80 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEE-CCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTC
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEe-cCccchhhhhhhhhhhcccccccccccccCcccccccCCc
Confidence 3479999995 99999999998875532 12256677 7654 33333321 1 234556667889999
Q ss_pred CEEEEee
Q 024121 73 DVVVFSV 79 (272)
Q Consensus 73 Divil~v 79 (272)
|+|+++-
T Consensus 81 dvVVita 87 (154)
T d5mdha1 81 DVAILVG 87 (154)
T ss_dssp SEEEECC
T ss_pred eEEEEec
Confidence 9999985
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.61 E-value=7.3e-06 Score=61.74 Aligned_cols=101 Identities=15% Similarity=0.120 Sum_probs=57.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhc--cCCEEEEeeCccc
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQV 83 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDivil~v~~~~ 83 (272)
....+||||||+|.||...+..|.+... ...+.++ +....+ +... .+.. ..+.++++. +.|+|++|+|++.
T Consensus 4 ~~~k~kv~iIG~G~~g~~h~~~l~~~~~--~~~~~~~-~~~~~~--~~~~~~~~~-~~~~~e~l~~~~iD~V~I~tp~~~ 77 (172)
T d1lc0a1 4 NSGKFGVVVVGVGRAGSVRLRDLKDPRS--AAFLNLI-GFVSRR--ELGSLDEVR-QISLEDALRSQEIDVAYICSESSS 77 (172)
T ss_dssp CCCSEEEEEECCSHHHHHHHHHHTSHHH--HTTEEEE-EEECSS--CCCEETTEE-BCCHHHHHHCSSEEEEEECSCGGG
T ss_pred CCCCcEEEEEcCCHHHHHHHHHHHhCCC--CcEEEEE-eccchH--HHHHhhccC-cCCHHHHHhCCCcchhhhcccccc
Confidence 3456799999999999998888775431 0134444 322111 1111 2222 345667765 5789999999987
Q ss_pred HHHHHHHhchhcCCCC-EEEEEcCCCCHHHHHHH
Q 024121 84 VKDVAMQIRPLLSRKK-LLVSVAAGVKLKDLQEW 116 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~-~iis~~~~~~~~~l~~~ 116 (272)
..+++..... .++ +++.=.-+.+.++..+.
T Consensus 78 H~~~~~~al~---~gk~V~~EKP~a~~~~e~~~l 108 (172)
T d1lc0a1 78 HEDYIRQFLQ---AGKHVLVEYPMTLSFAAAQEL 108 (172)
T ss_dssp HHHHHHHHHH---TTCEEEEESCSCSCHHHHHHH
T ss_pred cccccccccc---cchhhhcCCCccccHHHHHHH
Confidence 7666655443 333 44432223455555443
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=97.61 E-value=4.9e-05 Score=54.75 Aligned_cols=97 Identities=12% Similarity=0.225 Sum_probs=72.4
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
.++|+|||+ ++.|..+.++|.+.|| +++.+ +.++... . -.|.....+..++-...|++++++|++.+.
T Consensus 13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~----~~~~v-~~~~~~~-~--i~g~~~~~~l~~i~~~iD~v~v~~p~~~v~ 84 (136)
T d1iuka_ 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY----RVLPV-NPRFQGE-E--LFGEEAVASLLDLKEPVDILDVFRPPSALM 84 (136)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTC----EEEEE-CGGGTTS-E--ETTEECBSSGGGCCSCCSEEEECSCHHHHT
T ss_pred CCeEEEEeecCCCCCchHHHHHHHhcCCC----CceEE-Eeccccc-e--eeceecccchhhccCCCceEEEeccHHHHH
Confidence 367999998 8999999999999999 99999 7654210 0 157777788888777899999999999988
Q ss_pred HHHHHhchhcCCCCEEEEEcCCCCHHHHHHHh
Q 024121 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~ 117 (272)
+++++.... ....+|+ ..|...+.+.+..
T Consensus 85 ~~v~~~~~~-g~k~i~~--q~G~~~~e~~~~a 113 (136)
T d1iuka_ 85 DHLPEVLAL-RPGLVWL--QSGIRHPEFEKAL 113 (136)
T ss_dssp TTHHHHHHH-CCSCEEE--CTTCCCHHHHHHH
T ss_pred HHHHHHHhh-CCCeEEE--ecCccCHHHHHHH
Confidence 888876543 3444444 5666655555544
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=3e-05 Score=58.85 Aligned_cols=94 Identities=15% Similarity=0.108 Sum_probs=61.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------cCc--eeec-----CchhhhccC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IGV--KVLS-----DNNAVVEYS 72 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~g~--~~~~-----~~~~~~~~a 72 (272)
.+.++|.|||+|-+|.+++..|.+.|. ..++++ +|++++.+++.. .+. .... +..+.+.++
T Consensus 16 l~~k~vlIlGaGGaarai~~al~~~g~---~~i~i~-nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (182)
T d1vi2a1 16 IKGKTMVLLGAGGASTAIGAQGAIEGL---KEIKLF-NRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASA 91 (182)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-ECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTC
T ss_pred cCCCEEEEECCcHHHHHHHHHHhhcCC---ceEeee-ccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhccc
Confidence 356899999999999999999999886 389999 998776554332 111 1111 123446689
Q ss_pred CEEEEeeCcccHH---HHHHHhchhcCCCCEEEEEc
Q 024121 73 DVVVFSVKPQVVK---DVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 73 Divil~v~~~~~~---~v~~~l~~~l~~~~~iis~~ 105 (272)
|+||=|+|..... +.+..-...++++.+++|+.
T Consensus 92 diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~ 127 (182)
T d1vi2a1 92 DILTNGTKVGMKPLENESLVNDISLLHPGLLVTECV 127 (182)
T ss_dssp SEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECC
T ss_pred ceeccccCCccccccchhhhhHHHhhhcchhhHHhh
Confidence 9999998854221 11100012356777888775
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.51 E-value=0.00023 Score=55.62 Aligned_cols=100 Identities=17% Similarity=0.231 Sum_probs=71.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhh-ccCCEEEEeeCcccH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVV-EYSDVVVFSVKPQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~-~~aDivil~v~~~~~ 84 (272)
..+.+||.|-|.|++|+.+++.|.+.|. .|.+. +.++.+.+.+.. .|....+ +.+.. .+||+++-|--...+
T Consensus 36 ~l~g~~v~IqG~GnVG~~~a~~L~~~Ga----kvv~~-d~~~~~~~~~~~~~g~~~~~-~~~~~~~~cDIl~PcA~~~~I 109 (230)
T d1leha1 36 SLEGLAVSVQGLGNVAKALCKKLNTEGA----KLVVT-DVNKAAVSAAVAEEGADAVA-PNAIYGVTCDIFAPCALGAVL 109 (230)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHCCEECC-GGGTTTCCCSEEEECSCSCCB
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC----EEEee-cccHHHHHHHHHhcCCcccC-CcccccccccEeccccccccc
Confidence 3467899999999999999999999999 99999 999988887776 6766544 44444 489999999655543
Q ss_pred -HHHHHHhchhcCCCCEEEEEc-CCCCHHHHHHHh
Q 024121 85 -KDVAMQIRPLLSRKKLLVSVA-AGVKLKDLQEWT 117 (272)
Q Consensus 85 -~~v~~~l~~~l~~~~~iis~~-~~~~~~~l~~~~ 117 (272)
.+.+++|. -++|+... ++.+.....+.+
T Consensus 110 ~~~~~~~l~-----ak~Ive~ANn~~t~~ea~~~L 139 (230)
T d1leha1 110 NDFTIPQLK-----AKVIAGSADNQLKDPRHGKYL 139 (230)
T ss_dssp STTHHHHCC-----CSEECCSCSCCBSSHHHHHHH
T ss_pred ChHHhhccC-----ccEEEecccCCCCCchHHHHH
Confidence 34445543 35777655 444433333334
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.00052 Score=50.98 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=61.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeec-----Cchhhh--------ccCCEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS-----DNNAVV--------EYSDVV 75 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~-----~~~~~~--------~~aDiv 75 (272)
...+|.|+|+|.+|...+..+...|. .+|.++ ++++++++.+++.|+.... +..+.. ..+|+|
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~---~~Vi~~-d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvv 101 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGA---AQVVVT-DLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVT 101 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-ESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCC---ceEEec-cCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEE
Confidence 34689999999999999888888886 368899 9999999988888864321 212211 258999
Q ss_pred EEeeCccc-HHHHHHHhchhcCCCCEEEEE
Q 024121 76 VFSVKPQV-VKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 76 il~v~~~~-~~~v~~~l~~~l~~~~~iis~ 104 (272)
|-|+.... ++..+ ..++++..++-.
T Consensus 102 id~~G~~~~~~~a~----~~~~~gG~iv~~ 127 (171)
T d1pl8a2 102 IECTGAEASIQAGI----YATRSGGTLVLV 127 (171)
T ss_dssp EECSCCHHHHHHHH----HHSCTTCEEEEC
T ss_pred EeccCCchhHHHHH----HHhcCCCEEEEE
Confidence 99997543 33333 334566666643
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.46 E-value=0.00052 Score=50.85 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=60.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee--cC-----chhh---h-----ccCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SD-----NNAV---V-----EYSD 73 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~-----~~~~---~-----~~aD 73 (272)
...+|.|+|+|.+|...+..+...|. +|+++ ++++++.+.+++.|.... .+ ..+. + ..+|
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga----~vi~v-~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D 100 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGA----FVVCT-ARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN 100 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred CCCEEEEEcccccchhhHhhHhhhcc----ccccc-chHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCc
Confidence 34589999999999999998888898 99999 999999988888775321 11 1111 1 2479
Q ss_pred EEEEeeCcc-cHHHHHHHhchhcCCCCEEEEE
Q 024121 74 VVVFSVKPQ-VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 74 ivil~v~~~-~~~~v~~~l~~~l~~~~~iis~ 104 (272)
+||-|+... .+...++ .++++..++..
T Consensus 101 ~vid~~g~~~~~~~a~~----~~~~~G~iv~~ 128 (170)
T d1e3ja2 101 VTIDCSGNEKCITIGIN----ITRTGGTLMLV 128 (170)
T ss_dssp EEEECSCCHHHHHHHHH----HSCTTCEEEEC
T ss_pred eeeecCCChHHHHHHHH----HHhcCCceEEE
Confidence 999998644 3444443 34566666644
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.44 E-value=0.00014 Score=54.71 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=52.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c----Cc-----eeecCchhhhccCCEEEE
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----GV-----KVLSDNNAVVEYSDVVVF 77 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~----g~-----~~~~~~~~~~~~aDivil 77 (272)
.+.++|.|||+|-.+.+++..|.+.| +|+++ +|++++++.+.+ . .. .-..+......++|+||-
T Consensus 16 ~~~k~vlIlGaGG~arai~~aL~~~~-----~i~I~-nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn 89 (177)
T d1nvta1 16 VKDKNIVIYGAGGAARAVAFELAKDN-----NIIIA-NRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIIN 89 (177)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHTSSS-----EEEEE-CSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEE
T ss_pred cCCCEEEEECCcHHHHHHHHHHcccc-----ceeee-hhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhcc
Confidence 35689999999999999999997654 89999 999999888764 1 11 112334455678999999
Q ss_pred eeCcc
Q 024121 78 SVKPQ 82 (272)
Q Consensus 78 ~v~~~ 82 (272)
|+|..
T Consensus 90 ~tp~g 94 (177)
T d1nvta1 90 ATPIG 94 (177)
T ss_dssp CSCTT
T ss_pred CCccc
Confidence 98754
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.38 E-value=0.00012 Score=55.12 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=63.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEE-EEeCCC----H-HHHHHHHH--cC-----ceeecCchhhhccCCEE
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSN----L-KRRDAFES--IG-----VKVLSDNNAVVEYSDVV 75 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~-v~~~r~----~-~~~~~l~~--~g-----~~~~~~~~~~~~~aDiv 75 (272)
|+||+|||+ |..|.-+.+.|.++..+ +|. ++ .+. . ++...... .+ .....+......++|++
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~---ei~~l~-~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvv 76 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHM---TITALT-VSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVV 76 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTE---EEEEEE-EETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCC---ceEeeE-eecccccccccccccccccccccccccccchhhhhhhccccee
Confidence 689999995 99999999998886432 543 33 221 1 11222111 11 12223334445789999
Q ss_pred EEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH---HHHHHHhC
Q 024121 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG 118 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~---~~l~~~~~ 118 (272)
|+|+|+....+....+. ..+..+||.++..-. ....++.+
T Consensus 77 f~alp~~~s~~~~~~~~---~~~~~vIDlSadfRl~~~~~~~~~y~ 119 (179)
T d2g17a1 77 FLATAHEVSHDLAPQFL---QAGCVVFDLSGAFRVNDRAFYEKYYG 119 (179)
T ss_dssp EECSCHHHHHHHHHHHH---HTTCEEEECSSTTSSSCHHHHHHHHC
T ss_pred eccccchhHHHHhhhhh---hcCceeeccccccccccccccccccc
Confidence 99999888777766554 467789998776533 33444443
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=0.001 Score=48.41 Aligned_cols=68 Identities=9% Similarity=0.055 Sum_probs=49.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHHcCceee-cC--chhh-----hccCCEEEEee
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FESIGVKVL-SD--NNAV-----VEYSDVVVFSV 79 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~~g~~~~-~~--~~~~-----~~~aDivil~v 79 (272)
.|-|+|+|.+|..+++.|.+.|+ ++++. +.++++... +...|+.+. .| ..+. +++||.+++++
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~----~v~vI-d~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQ----NVTVI-SNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC----CEEEE-ECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred EEEEECCCHHHHHHHHHHHHcCC----CEEEE-eccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 58899999999999999999998 99999 888765432 222566543 22 1222 56899999998
Q ss_pred CcccH
Q 024121 80 KPQVV 84 (272)
Q Consensus 80 ~~~~~ 84 (272)
+++..
T Consensus 80 ~~d~~ 84 (153)
T d1id1a_ 80 DNDAD 84 (153)
T ss_dssp SCHHH
T ss_pred ccHHH
Confidence 87654
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.36 E-value=0.00019 Score=53.72 Aligned_cols=74 Identities=16% Similarity=0.190 Sum_probs=45.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCce------------------eecCchhhh
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVK------------------VLSDNNAVV 69 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~------------------~~~~~~~~~ 69 (272)
+.+||||.|.|+||+.+.+.+.+..- -+|...++.++.. ...+.+.+.. +..+..++.
T Consensus 1 M~irIaINGfGRIGR~v~Ral~~~~d---ieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
T d2czca2 1 MKVKVGVNGYGTIGKRVAYAVTKQDD---MELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (172)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTT---EEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred CcEEEEEECCCHHHHHHHHHHHhCCC---ceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhh
Confidence 35799999999999999999987542 1555443665533 3334333322 222334445
Q ss_pred ccCCEEEEeeCcccHH
Q 024121 70 EYSDVVVFSVKPQVVK 85 (272)
Q Consensus 70 ~~aDivil~v~~~~~~ 85 (272)
.++|+|+-|++...-.
T Consensus 78 ~~vDvViEcTG~f~~~ 93 (172)
T d2czca2 78 EKVDIIVDATPGGIGA 93 (172)
T ss_dssp TTCSEEEECCSTTHHH
T ss_pred ccCCEEEECCCCCCCH
Confidence 6778888887665433
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.34 E-value=0.0014 Score=48.83 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=60.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCHH--HHHHHH----H------cCceeecCchhhhccC
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLK--RRDAFE----S------IGVKVLSDNNAVVEYS 72 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~~--~~~~l~----~------~g~~~~~~~~~~~~~a 72 (272)
+..||.|+|+ |.+|++++..|....... .-.+.++ +.+.. .++.+. . ..+.+..+..+.++++
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~-di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~a 101 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLL-GSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDV 101 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEE-CCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTC
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEe-cCccccchhcchhhhhcccccccccCccccccchhhccCC
Confidence 4458999996 999999999998754321 1245666 76542 223221 1 1234566778889999
Q ss_pred CEEEEee--C--c-cc-----------HHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 73 DVVVFSV--K--P-QV-----------VKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 73 Divil~v--~--~-~~-----------~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
|+||++- | | .. ++++.+.+..+-+++.+|+-.++++
T Consensus 102 DvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPv 153 (175)
T d7mdha1 102 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPC 153 (175)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred ceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcH
Confidence 9999986 2 2 12 2333445556555566666555543
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.30 E-value=0.00022 Score=53.50 Aligned_cols=101 Identities=16% Similarity=0.242 Sum_probs=63.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHH--cC-cee-ecCchhhhccCCEEEEeeCcc
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES--IG-VKV-LSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~--~g-~~~-~~~~~~~~~~aDivil~v~~~ 82 (272)
|+||||+|+ |..|.-+.+-|.++-+ .++.....++.. +...... .+ ... ..+.++..+++|++|+|+|..
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~---~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~ 77 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPE---AKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAG 77 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTT---EEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTT
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCC---ceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccH
Confidence 579999987 9999999998887543 254433144332 2222211 11 111 134455667899999999988
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcCCCCH---HHHHHHhC
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG 118 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~~~~~---~~l~~~~~ 118 (272)
...+...+ . .+..|||.++..-. +..+++.+
T Consensus 78 ~s~~~~~~----~-~~~~VIDlSadfRl~~~~~y~~~Y~ 111 (176)
T d1vkna1 78 ASYDLVRE----L-KGVKIIDLGADFRFDDPGVYREWYG 111 (176)
T ss_dssp HHHHHHTT----C-CSCEEEESSSTTTCSSHHHHHHHHC
T ss_pred HHHHHHHh----h-ccceEEecCccccccchhhHHHhhc
Confidence 77666543 2 56789998877643 34455554
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.00021 Score=49.35 Aligned_cols=43 Identities=12% Similarity=0.240 Sum_probs=36.2
Q ss_pred CCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024121 2 DAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (272)
Q Consensus 2 ~~~~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (272)
.+-|-.....||||||.|.+|..|+....+-|+ ++.++ +++++
T Consensus 3 ~~~~~~~~~~kigIlGgGQL~rMla~aA~~lG~----~v~v~-d~~~~ 45 (111)
T d1kjqa2 3 LGTALRPAATRVMLLGSGELGKEVAIECQRLGV----EVIAV-DRYAD 45 (111)
T ss_dssp BCCTTSTTCCEEEEESCSHHHHHHHHHHHTTTC----EEEEE-ESSTT
T ss_pred cCCCCCCCCCEEEEEeCCHHHHHHHHHHHHCCC----EEEEE-cCCCC
Confidence 344544466799999999999999999999999 99999 88753
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=97.20 E-value=0.00052 Score=51.11 Aligned_cols=87 Identities=9% Similarity=0.124 Sum_probs=51.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcC------------------ceeecCchhhhc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIG------------------VKVLSDNNAVVE 70 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g------------------~~~~~~~~~~~~ 70 (272)
|+||||-|.|+||+.+.+.+.+.+. -+|...+++++. ....+...+ +.+..+..++.+
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~d---i~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~ 77 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDD---MKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD 77 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSS---EEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCC---ceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhc
Confidence 4689999999999999998887653 256555366542 222333322 222223345566
Q ss_pred cCCEEEEeeCcccHHHHHHHhchhcCCCCEEE
Q 024121 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 71 ~aDivil~v~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
++|+|+-|++...-.+-+ .+++..+.-+|
T Consensus 78 ~vDvViEcTG~f~~~~~~---~~hl~~G~K~v 106 (171)
T d1cf2o1 78 EADIVIDCTPEGIGAKNL---KMYKEKGIKAI 106 (171)
T ss_dssp TCSEEEECCSTTHHHHHH---HHHHHTTCEEE
T ss_pred CCCEEEEccCCCCCHHHH---HHHHHcCCCEE
Confidence 888888888765433322 33344444444
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.18 E-value=0.00056 Score=48.93 Aligned_cols=90 Identities=21% Similarity=0.263 Sum_probs=65.2
Q ss_pred CCCeEEEEcc----------cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-------HHHHH----cCceeecCchh
Q 024121 9 ESFILGFIGA----------GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-------DAFES----IGVKVLSDNNA 67 (272)
Q Consensus 9 ~~~~IgiIG~----------G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~-------~~l~~----~g~~~~~~~~~ 67 (272)
..+||+|+|+ +.-.-.++..|.+.|. +|.+| |+.-... +.+.. .+.....+..+
T Consensus 12 ~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~----~V~~~-DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 86 (136)
T d1mv8a3 12 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGY----ELRIF-DRNVEYARVHGANKEYIESKIPHVSSLLVSDLDE 86 (136)
T ss_dssp SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTC----EEEEE-CHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHH
T ss_pred CCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhc----ccccc-CCCCCHHHHhhhhhhhhhhccccccceeehhhhh
Confidence 4579999997 5677889999999999 99999 7532211 11111 22345678889
Q ss_pred hhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCC
Q 024121 68 VVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 68 ~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
++.++|+|+++++.+...++... ..++++|+|+-+-
T Consensus 87 ~i~~~D~ivi~t~h~~f~~l~~~----~~~~~~I~D~~~~ 122 (136)
T d1mv8a3 87 VVASSDVLVLGNGDELFVDLVNK----TPSGKKLVDLVGF 122 (136)
T ss_dssp HHHHCSEEEECSCCGGGHHHHHS----CCTTCEEEESSSC
T ss_pred hhhhceEEEEEeCCHHHHHHHHH----hcCCCEEEECCCC
Confidence 99999999999998888766433 4567889987543
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.11 E-value=0.0035 Score=44.48 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=55.9
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCC-CCCCCcEE-EEeCCCHHHHHHHHHcCceeecCchhh-hccCCEEEEeeCcccHHHH
Q 024121 12 ILGFIG-AGKMAESIAKGVAKSG-VLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAV-VEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 12 ~IgiIG-~G~mG~~la~~l~~~g-~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~aDivil~v~~~~~~~v 87 (272)
||+|+| .|+||+.+++.+.+.. + ++. .+ ++.. +.... ..++|+||=-+.|+.+.+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~----~l~~~~-d~~~---------------~~~~~~~~~~DvvIDFS~p~~~~~~ 60 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDL----TLSAEL-DAGD---------------PLSLLTDGNTEVVIDFTHPDVVMGN 60 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTS----EEEEEE-CTTC---------------CTHHHHTTTCSEEEECCCTTTHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCC----EEEEEE-ecCC---------------chhhhccccCCEEEEcccHHHHHHH
Confidence 799999 5999999999877643 3 554 34 5532 11111 2478999999999988888
Q ss_pred HHHhchhcCCCCEEEEEcCCCCHHHHHH
Q 024121 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~~~~~l~~ 115 (272)
++... +.+..+|.-++|.+.+++++
T Consensus 61 ~~~~~---~~~~~~ViGTTG~~~~~~~~ 85 (135)
T d1yl7a1 61 LEFLI---DNGIHAVVGTTGFTAERFQQ 85 (135)
T ss_dssp HHHHH---HTTCEEEECCCCCCHHHHHH
T ss_pred HHHHH---hcCCCEEEeccccchhHHHH
Confidence 77654 34556676778888765543
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=97.09 E-value=0.00061 Score=51.35 Aligned_cols=95 Identities=15% Similarity=0.178 Sum_probs=57.9
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHH--cC--ce-eecCchhhhccCCEEEEe
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES--IG--VK-VLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~--~g--~~-~~~~~~~~~~~aDivil~ 78 (272)
..+..||||||+ |-.|.-+.+.|.++-+ .++.....++.. +...... .+ .. ......+...++|++|+|
T Consensus 2 s~~kikVaIlGATGyvG~elirLL~~HP~---~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a 78 (183)
T d2cvoa1 2 SGEEVRIAVLGASGYTGAEIVRLLANHPQ---FRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCC 78 (183)
T ss_dssp CSSCEEEEEESCSSHHHHHHHHHHTTCSS---EEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEEC
T ss_pred CCCccEEEEECcccHHHHHHHHHHHhCCC---ceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeec
Confidence 456789999987 9999999998887543 255433133322 1222211 11 11 112234456789999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
+|.....++...+. ....+++..+..
T Consensus 79 lp~~~s~~~~~~l~----~~~~~v~~~~~~ 104 (183)
T d2cvoa1 79 LPHGTTQEIIKGLP----QELKIVDLSADF 104 (183)
T ss_dssp CSSSHHHHHHHTSC----SSCEEEECSSTT
T ss_pred cccchHHHHHHHHH----hcCcccccchhh
Confidence 99998877776543 334556555543
|
| >d2f1ka1 a.100.1.12 (A:166-279) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: TyrA dimerization domain-like domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.05 E-value=0.00044 Score=47.91 Aligned_cols=95 Identities=11% Similarity=0.053 Sum_probs=65.1
Q ss_pred cccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHH
Q 024121 169 EKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPR---ELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIA 243 (272)
Q Consensus 169 e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~---~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~ 243 (272)
+++||..++.+ .|++++. +++...... -+. ....++..++|+++++++. .+|.+|.+.+..+.....+
T Consensus 2 PeeHD~~~A~iSHLPHlia~---~l~~~~~~~-~~~~~~~~~~~~ag~gfrD~tRiA~---s~p~mW~dI~~~N~~~i~~ 74 (114)
T d2f1ka1 2 PADHDQAVAWISHLPVMVSA---ALIQACAGE-KDGDILKLAQNLASSGFRDTSRVGG---GNPELGTMMATYNQRALLK 74 (114)
T ss_dssp HHHHHHHHHHHTHHHHHHHH---HHHHHHHTC-SCHHHHHHHHHHCCHHHHHHHTGGG---SCHHHHHHHHHHSHHHHHH
T ss_pred hHHHHHHHHHHhhHHHHHHH---HHHHHHHhh-hhhhhHHHHHHHhhhhHHHHHHHHc---cCHHHHHHHHHHHHHHHHH
Confidence 56789888877 7877554 333222211 122 3345677788999888864 5899999999999888888
Q ss_pred HHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024121 244 GIHELEKS--GFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 244 ~l~~l~~~--~~~~~~~----~~~~~~~~r~~~ 270 (272)
.++.+.+. .++..+. +.+.+.++++++
T Consensus 75 ~l~~~~~~L~~l~~~l~~~d~~~l~~~l~~a~~ 107 (114)
T d2f1ka1 75 SLQDYRQHLDQLITLISNQQWPELHRLLQQTNG 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88887664 5666654 667777777765
|
| >d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: TyrA dimerization domain-like domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.05 E-value=2.4e-05 Score=54.14 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=64.6
Q ss_pred CcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHH
Q 024121 168 DEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245 (272)
Q Consensus 168 ~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l 245 (272)
++++||..++.+ .|++++. +++..+.....+......+..++|+++++++. .+|.+|.+.+.++.......+
T Consensus 1 SPeeHD~~~A~vSHlPHlia~---al~~~~~~~~~~~~~~~~~agggfrD~TRiA~---s~p~mW~dI~~~N~~~i~~~l 74 (110)
T d2g5ca1 1 SPELHDYVFGVVSHLPHAVAF---ALVDTLIHMSTPEVDLFKYPGGGFKDFTRIAK---SDPIMWRDIFLENKENVMKAI 74 (110)
T ss_dssp CHHHHHHHHHHHTHHHHHHHH---HHHHHHHHHCBTTBCGGGCCTTTGGGC---CC---SCHHHHHHHHHHTHHHHHHHH
T ss_pred ChHHHHHHHHHHhhHHHHHHH---HHHHHHHHhhcchHHHHHHcchhHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHH
Confidence 356789998877 8887664 33333333333333345677889999888853 689999999999988888888
Q ss_pred HHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024121 246 HELEKS--GFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 246 ~~l~~~--~~~~~~~----~~~~~~~~r~~~ 270 (272)
+.+++. .++..+. +.+.+.++++++
T Consensus 75 ~~~~~~L~~~~~~l~~~D~~~l~~~l~~a~~ 105 (110)
T d2g5ca1 75 EGFEKSLNHLKELIVREAEEELVEYLKEVKI 105 (110)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888665 5555553 466666666654
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.99 E-value=0.00026 Score=51.90 Aligned_cols=93 Identities=16% Similarity=0.216 Sum_probs=58.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--cCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
-||||||+ |-.|.-+.+-|.++.+ +..++... ..+...-+.+.. ..........+...+.|++|+|+|+....+.
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~f-p~~~l~~~-~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~~ 79 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTL-PIDKIRYL-ASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKY 79 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCS-CEEEEEEE-ECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCC-CceEEEEe-cccccccccccccCCcccccccchhhhhhhhhhhhccCccchhhH
Confidence 38999998 9999999998887754 22345544 221111000000 1122233344556789999999998876666
Q ss_pred HHHhchhcCCCCEEEEEcCCC
Q 024121 88 AMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~ 108 (272)
..+.. ..+..|||.++..
T Consensus 80 ~~~~~---~~~~~VIDlSsdf 97 (154)
T d2gz1a1 80 APYAV---KAGVVVVDNTSYF 97 (154)
T ss_dssp HHHHH---HTTCEEEECSSTT
T ss_pred Hhhhc---cccceehhcChhh
Confidence 65443 4688999987654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.98 E-value=0.0023 Score=45.00 Aligned_cols=86 Identities=8% Similarity=0.053 Sum_probs=57.7
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCc--hhh-----hccCCEEEEeeCccc
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NAV-----VEYSDVVVFSVKPQV 83 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~--~~~-----~~~aDivil~v~~~~ 83 (272)
.|-|+|.|.+|..+++.|. |+ +|.+. +.++++.+.+...|+.+. .|. .+. +.+|+.++++++++.
T Consensus 2 HivI~G~g~~g~~l~~~L~--~~----~i~vi-~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~ 74 (129)
T d2fy8a1 2 HVVICGWSESTLECLRELR--GS----EVFVL-AEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDS 74 (129)
T ss_dssp CEEEESCCHHHHHHHHTSC--GG----GEEEE-ESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHH
T ss_pred EEEEECCCHHHHHHHHHHc--CC----CCEEE-EcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchh
Confidence 4778999999999999884 45 78888 899998888888776543 222 222 558999999987765
Q ss_pred HHHHHHHhchhcCCCCEEEEE
Q 024121 84 VKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~ 104 (272)
..-.+-.....+.|...++..
T Consensus 75 ~n~~~~~~~r~~~~~~~iia~ 95 (129)
T d2fy8a1 75 ETIHCILGIRKIDESVRIIAE 95 (129)
T ss_dssp HHHHHHHHHHHHCSSSCEEEE
T ss_pred hhHHHHHHHHHHCCCceEEEE
Confidence 443332222234455444433
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.0014 Score=49.02 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=41.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~ 60 (272)
.....+|.|+|+|.+|...+..+...|. .+|++. ++++++.+.+++.|+.
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga---~~Vi~~-~~~~~~~~~a~~lGa~ 75 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGA---ENVIVI-AGSPNRLKLAEEIGAD 75 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTB---SEEEEE-ESCHHHHHHHHHTTCS
T ss_pred CCCCCEEEEECCCccchhheeccccccc---cccccc-ccccccccccccccce
Confidence 3345789999999999988888877775 268999 9999999888887763
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.88 E-value=0.0018 Score=48.15 Aligned_cols=88 Identities=15% Similarity=0.113 Sum_probs=59.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecC-----chhhh------ccCCEEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD-----NNAVV------EYSDVVVF 77 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~-----~~~~~------~~aDivil 77 (272)
...+|.|+|+|.+|...++.+...|. .+|++. ++++++.+..++.|+..+-+ ..+.+ ...|+||-
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga---~~Vi~~-d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid 102 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRGA---GRIIGV-GSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIM 102 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTC---SCEEEE-CCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEEcCCcchhhhhhhhhcccc---cccccc-cchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEE
Confidence 34579999999999988888877775 268999 99999988888888642211 11111 13799999
Q ss_pred eeCc-ccHHHHHHHhchhcCCCCEEEEE
Q 024121 78 SVKP-QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 78 ~v~~-~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|+.. ..++..+.- ++++..++.+
T Consensus 103 ~~g~~~~~~~a~~~----~~~~G~iv~~ 126 (174)
T d1jqba2 103 AGGGSETLSQAVKM----VKPGGIISNI 126 (174)
T ss_dssp CSSCTTHHHHHHHH----EEEEEEEEEC
T ss_pred ccCCHHHHHHHHHH----HhcCCEEEEE
Confidence 9964 445555543 3455555543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.83 E-value=0.0013 Score=49.74 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=39.7
Q ss_pred CCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 6 IPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 6 ~~~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
...+.+++-|.| .|-+|..+++.|.+.|. +|.+. +|++++.+.+.+
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~----~V~~~-~r~~~~~~~~~~ 65 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGA----EVVLC-GRKLDKAQAAAD 65 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhcc----chhhc-ccchHHHHHHHH
Confidence 345678898998 69999999999999999 99999 999998876654
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.0012 Score=48.48 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=56.2
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee-CcccH
Q 024121 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KPQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v-~~~~~ 84 (272)
....++|.|||-+. +|.+++.-|.+.|. .|+++ +... .+..+.++++|+||.++ .+..+
T Consensus 34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~ga----tVt~~-h~~t--------------~~l~~~~~~ADivI~a~G~p~~i 94 (166)
T d1b0aa1 34 DTFGLNAVVIGASNIVGRPMSMELLLAGC----TTTVT-HRFT--------------KNLRHHVENADLLIVAVGKPGFI 94 (166)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTC----EEEEE-CSSC--------------SCHHHHHHHCSEEEECSCCTTCB
T ss_pred ccccceEEEEeccccccHHHHHHHHHhhc----ccccc-cccc--------------chhHHHHhhhhHhhhhccCcccc
Confidence 45678999999976 99999999999998 99998 6543 23455678999999999 44443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
. ...++++.++|+.
T Consensus 95 ~------~~~vk~g~vvIDv 108 (166)
T d1b0aa1 95 P------GDWIKEGAIVIDV 108 (166)
T ss_dssp C------TTTSCTTCEEEEC
T ss_pred c------ccccCCCcEEEec
Confidence 2 2346899999986
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.00052 Score=43.87 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=31.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
+++|||||.|.+|+.|+..-.+-|+ ++.++ +.++
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~----~v~vl-dp~~ 34 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGI----AVWPV-GLDA 34 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTE----EEEEE-CTTS
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCC----EEEEE-cCCC
Confidence 4789999999999999999999999 99999 8764
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.80 E-value=0.0031 Score=46.25 Aligned_cols=47 Identities=9% Similarity=0.173 Sum_probs=41.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~ 60 (272)
...+|.|+|+|.+|...+..+...|. +|.+. ++++++.+.+++.|+.
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~----~Vi~~-~~~~~~~~~a~~~Ga~ 73 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGL----HVAAI-DIDDAKLELARKLGAS 73 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTTCS
T ss_pred CCCEEEEeeccccHHHHHHHHHHcCC----cccee-cchhhHHHhhhccCcc
Confidence 45689999999999999888888888 99999 9999999888887764
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.76 E-value=0.0026 Score=46.63 Aligned_cols=48 Identities=8% Similarity=0.190 Sum_probs=41.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV 61 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~ 61 (272)
...+|.|+|+|.+|...+..+...|. +|++. ++++++.+.+++.|+..
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~~~g~----~v~~~-~~~~~r~~~~k~~Ga~~ 74 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAKAMGL----NVVAV-DIGDEKLELAKELGADL 74 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCSE
T ss_pred CCCEEEEeecccchhhhhHHHhcCCC----eEecc-CCCHHHhhhhhhcCcce
Confidence 34689999999999998888888888 99999 99999999888888654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.70 E-value=0.0056 Score=45.35 Aligned_cols=72 Identities=15% Similarity=0.102 Sum_probs=52.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCc-------hhhh-----ccCCE
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN-------NAVV-----EYSDV 74 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~-------~~~~-----~~aDi 74 (272)
.....+|.|+|+|.+|...+..+...|. ..|++. ++++++.+..++.|+...-+. .+.. ...|+
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~---~~Vi~~-d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~ 100 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGA---SRIIGV-GTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDY 100 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCC---ceeecc-CChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcE
Confidence 3345689999999999999998888885 268888 999999998888886532111 1111 24789
Q ss_pred EEEeeCcc
Q 024121 75 VVFSVKPQ 82 (272)
Q Consensus 75 vil~v~~~ 82 (272)
+|.|+-..
T Consensus 101 vid~~g~~ 108 (174)
T d1p0fa2 101 AVECAGRI 108 (174)
T ss_dssp EEECSCCH
T ss_pred EEEcCCCc
Confidence 99888543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.0026 Score=46.84 Aligned_cols=87 Identities=17% Similarity=0.256 Sum_probs=60.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-c-C-c---hhhhccCCEEEEeeCc-
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S-D-N---NAVVEYSDVVVFSVKP- 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~-~-~---~~~~~~aDivil~v~~- 81 (272)
...+|.|+|+|.+|...++.+...|. ++++. ++++++.+.+++.|+... + + . ....+..|++|-|+..
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga----~~i~~-~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~ 104 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGA----HVVAF-TTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAP 104 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSC
T ss_pred CCCEEEEeccchHHHHHHHHhhcccc----cchhh-ccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecc
Confidence 35689999999999988888888898 88888 888888887777776422 1 1 1 1223468999999964
Q ss_pred ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
..+...+.- ++++..++..
T Consensus 105 ~~~~~~~~~----l~~~G~iv~~ 123 (168)
T d1uufa2 105 HNLDDFTTL----LKRDGTMTLV 123 (168)
T ss_dssp CCHHHHHTT----EEEEEEEEEC
T ss_pred hhHHHHHHH----HhcCCEEEEe
Confidence 456555543 3455555543
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.64 E-value=0.00028 Score=49.92 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=51.3
Q ss_pred CeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHHcCceee--cCchhhh-ccCCEEEEeeCcccHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVV-EYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~-~~aDivil~v~~~~~~~ 86 (272)
.+|.|+|+|++|.++++.+.. .+| ++..+.|-++++..+.. .|+.+. +...+.. ++.++.++++|....++
T Consensus 4 ~~v~I~GaG~~G~~l~~~l~~~~~~----~iv~fiDdd~~k~G~~I-~Gi~V~~~~~l~~~~~~~i~iai~~i~~~~~~~ 78 (126)
T d2dt5a2 4 WGLCIVGMGRLGSALADYPGFGESF----ELRGFFDVDPEKVGRPV-RGGVIEHVDLLPQRVPGRIEIALLTVPREAAQK 78 (126)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCSSE----EEEEEEESCTTTTTCEE-TTEEEEEGGGHHHHSTTTCCEEEECSCHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHhHhhcCCc----EEEEEEeCchHhcCCEE-CCEEEecHHHHHHHHhhcccEEEEeCCHHHHHH
Confidence 479999999999999987653 455 66655477765432111 466654 2222222 35788888989888888
Q ss_pred HHHHhch
Q 024121 87 VAMQIRP 93 (272)
Q Consensus 87 v~~~l~~ 93 (272)
+++.+..
T Consensus 79 I~d~l~~ 85 (126)
T d2dt5a2 79 AADLLVA 85 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.0042 Score=49.16 Aligned_cols=83 Identities=10% Similarity=0.222 Sum_probs=55.4
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHHH
Q 024121 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (272)
Q Consensus 12 ~IgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~~ 86 (272)
|+.+| |.+-+|.++|+.|.+.|+ +|+++ +|++++++++.+. ..+.-.+.+++.+.+ .++++++
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~----~Vv~~-~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~Dls~~~~v~~ 78 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGL----KVVGC-ARTVGNIEELAAE-------CKSAGYPGTLIPYRCDLSNEEDILS 78 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHHTTCSSEEEEEECCTTCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHhcCCCceEEEEEccCCCHHHHHH
Confidence 45555 558999999999999999 99999 9999888776541 111111234444443 3467788
Q ss_pred HHHHhchhcCCCCEEEEEcC
Q 024121 87 VAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~ 106 (272)
+++.+...+.+=.++|+..+
T Consensus 79 ~v~~~~~~~g~iD~lVnnAg 98 (257)
T d1xg5a_ 79 MFSAIRSQHSGVDICINNAG 98 (257)
T ss_dssp HHHHHHHHHCCCSEEEECCC
T ss_pred HHHHHHHhcCCCCEEEeccc
Confidence 88777665544457787643
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.63 E-value=0.00094 Score=51.51 Aligned_cols=65 Identities=11% Similarity=0.151 Sum_probs=46.4
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEE--EEeCCCHHHHHHHHHcCceee-------cCchhhhccCCEEEEe
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRIC--TAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~--v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDivil~ 78 (272)
+++||.|.| +|.+|+.+++.|++.|+ ++. .. .|++++...+.. ++... .+..++++++|.||.+
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~----~v~v~~~-~R~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~d~vi~~ 75 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSD----KFVAKGL-VRSAQGKEKIGG-EADVFIGDITDADSINPAFQGIDALVIL 75 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTT----TCEEEEE-ESCHHHHHHTTC-CTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC----cEEEEEE-cCCHHHHHhccC-CcEEEEeeeccccccccccccceeeEEE
Confidence 578999998 59999999999999997 644 45 788877655433 22211 1224557789999877
Q ss_pred e
Q 024121 79 V 79 (272)
Q Consensus 79 v 79 (272)
.
T Consensus 76 a 76 (252)
T d2q46a1 76 T 76 (252)
T ss_dssp C
T ss_pred E
Confidence 5
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.62 E-value=0.0022 Score=47.56 Aligned_cols=88 Identities=17% Similarity=0.120 Sum_probs=57.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-ee-c---Cchhhhc-----cCCEEE
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VL-S---DNNAVVE-----YSDVVV 76 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~-~~-~---~~~~~~~-----~aDivi 76 (272)
.....+|.|+|+|.+|...+..+...|. ..|.+. ++++++.+.+++.|+. +. . +..+.++ ..|+||
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~---~~v~~~-~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vi 101 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGA---SIIIAV-DIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFAL 101 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTC---SEEEEE-ESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEE
T ss_pred CCCCCEEEEeCCCHHHhhhhhccccccc---ceeeee-ccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEE
Confidence 3345689999999999999988888776 255677 8999999888888763 22 1 1122221 368899
Q ss_pred EeeCcc-cHHHHHHHhchhcCCCCEEE
Q 024121 77 FSVKPQ-VVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 77 l~v~~~-~~~~v~~~l~~~l~~~~~ii 102 (272)
-|+... .++..++- ++++..++
T Consensus 102 d~~G~~~~~~~~~~~----~~~~G~i~ 124 (174)
T d1f8fa2 102 ESTGSPEILKQGVDA----LGILGKIA 124 (174)
T ss_dssp ECSCCHHHHHHHHHT----EEEEEEEE
T ss_pred EcCCcHHHHHHHHhc----ccCceEEE
Confidence 888644 34444433 34444544
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.61 E-value=0.0016 Score=48.07 Aligned_cols=67 Identities=12% Similarity=0.205 Sum_probs=50.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ecC--ch----hhhccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSD--NN----AVVEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~~--~~----~~~~~aDivil~v~ 80 (272)
...+|.|+|+|.+|...++.+...|. +|++. ++++++.+.+++.|+.. ..+ .. ...+..|+++.|+.
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~----~vi~~-~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~ 100 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGA----ETYVI-SRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCAS 100 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC----EEEEE-ESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCS
T ss_pred CCCEEEEECCCCcchhHHHHhhhccc----ccccc-ccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEec
Confidence 35689999999999998888778898 99999 99999999888888642 111 11 12335788888864
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=96.60 E-value=0.0032 Score=47.03 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=31.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
..+||.|||.|.-|..-|..|.+.|| +|+++ ++++
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~~G~----~Vtl~-E~~~ 76 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAARGH----QVTLF-DAHS 76 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-ESSS
T ss_pred CCcEEEEECccHHHHHHHHHHHhhcc----ceEEE-eccC
Confidence 45799999999999999999999999 99999 7754
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.59 E-value=0.0073 Score=44.79 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=54.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cC-----chh-h-----hccCCEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD-----NNA-V-----VEYSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~-----~~~-~-----~~~aDivi 76 (272)
...+|.|+|+|-+|...+..+...|. .+|++. ++++++++..++.|+... ++ ..+ . -...|++|
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak~~G~---~~Vi~v-d~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi 104 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCKSAGA---SRIIGI-DLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTF 104 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEE
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCC---ceEEEe-cCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEE
Confidence 34579999999999999999988885 279999 999999998888886532 11 111 1 12588888
Q ss_pred EeeCcc-cHHHHH
Q 024121 77 FSVKPQ-VVKDVA 88 (272)
Q Consensus 77 l~v~~~-~~~~v~ 88 (272)
.++... ...+.+
T Consensus 105 ~~~g~~~~~~~a~ 117 (176)
T d1d1ta2 105 EVIGHLETMIDAL 117 (176)
T ss_dssp ECSCCHHHHHHHH
T ss_pred EeCCchHHHHHHH
Confidence 888543 344333
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.58 E-value=0.0064 Score=47.96 Aligned_cols=81 Identities=22% Similarity=0.201 Sum_probs=55.8
Q ss_pred CeEEEE-c-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHH
Q 024121 11 FILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (272)
Q Consensus 11 ~~IgiI-G-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~ 85 (272)
+||++| | .+-+|.++++.|.+.|+ +|.+. +|++++++++.+. ..+ ...+++.+.+ .+++++
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~~-------i~~--~g~~~~~~~~Dv~~~~~v~ 66 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGF----AVAIA-DYNDATAKAVASE-------INQ--AGGHAVAVKVDVSDRDQVF 66 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTSHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCcEEEEEeeCCCHHHHH
Confidence 578777 4 47799999999999999 99999 9999887765431 111 1234444443 345677
Q ss_pred HHHHHhchhcCCCCEEEEEc
Q 024121 86 DVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~ 105 (272)
++++++...+.+=.++|+..
T Consensus 67 ~~~~~~~~~~g~iDilVnnA 86 (255)
T d1gega_ 67 AAVEQARKTLGGFDVIVNNA 86 (255)
T ss_dssp HHHHHHHHHTTCCCEEEECC
T ss_pred HHHHHHHHHhCCccEEEecc
Confidence 78877766554445778653
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.53 E-value=0.0098 Score=43.98 Aligned_cols=78 Identities=15% Similarity=0.121 Sum_probs=54.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCc-------hhhh-----ccCCEE
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN-------NAVV-----EYSDVV 75 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~-------~~~~-----~~aDiv 75 (272)
....+|.|+|+|.+|...+..+...|. ..|++. ++++++.+..++.|+...-+. .... ...|++
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga---~~Vi~~-d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~v 102 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGA---SRIIAI-DINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYS 102 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCC---ceeeee-ccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEE
Confidence 345689999999999999888888886 268888 999999888888886432111 1111 357999
Q ss_pred EEeeCcc-cHHHHHH
Q 024121 76 VFSVKPQ-VVKDVAM 89 (272)
Q Consensus 76 il~v~~~-~~~~v~~ 89 (272)
|-|+... .++..++
T Consensus 103 ie~~G~~~~~~~a~~ 117 (174)
T d1e3ia2 103 LDCAGTAQTLKAAVD 117 (174)
T ss_dssp EESSCCHHHHHHHHH
T ss_pred EEecccchHHHHHHH
Confidence 9998543 4444443
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.49 E-value=0.0014 Score=51.12 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=31.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
..+||.|||+|..|.+.|..|.+.|+ +|+++ +|+
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~----~V~vi-er~ 38 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGY----SVHIL-ARD 38 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESS
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCC----CEEEE-eCC
Confidence 35689999999999999999999999 99999 875
|
| >d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: TyrA dimerization domain-like domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.48 E-value=0.005 Score=43.20 Aligned_cols=76 Identities=12% Similarity=-0.008 Sum_probs=51.5
Q ss_pred cccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH----HHHHHHhcCCCHHHHHHhcCCCcchHH
Q 024121 169 EKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG----AASMVTKSGKHPGQLKDDVASPGGTTI 242 (272)
Q Consensus 169 e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g----~~~~~~~~~~~~~~l~~~~~~~~g~t~ 242 (272)
..+||..++.+ .|+++.. ++.....+.+.+......+..++|+. +++++ +.+|++|.+....+... .
T Consensus 2 a~eHD~~~A~ishLpH~~~~---al~~~l~~~~~~~~~~~~~a~~~fr~~l~~~tRIa---~~~p~lw~dI~~~N~~~-~ 74 (128)
T d2pv7a1 2 ATEHDHNMTYIQALRHFSTF---ANGLHLSKQPINLANLLALSSPIYRLELAMIGRLF---AQDAELYADIIMDKSEN-L 74 (128)
T ss_dssp HHHHHHHHHHHTHHHHHHHH---HHHHHHTTSSCCHHHHHHTCCHHHHHHHHHHHHHH---TSCHHHHHHHHC----C-H
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCcchhHHHHHccHhHhhHHHHHHHHH---CCCHHHHHHHHHHCHHH-H
Confidence 35689999887 6776554 55555667889999888888877764 45554 36899999999887654 4
Q ss_pred HHHHHHHhC
Q 024121 243 AGIHELEKS 251 (272)
Q Consensus 243 ~~l~~l~~~ 251 (272)
+.++.+.+.
T Consensus 75 ~~l~~~~~~ 83 (128)
T d2pv7a1 75 AVIETLKQT 83 (128)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566665443
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.44 E-value=0.0029 Score=46.74 Aligned_cols=73 Identities=16% Similarity=0.271 Sum_probs=55.9
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
+...++|.|||-+. .|.+++.-|.+.|. .|+++ +.... +..+.++++|+|+.++. +..+
T Consensus 36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga----tVt~~-~~~t~--------------~l~~~~~~aDivi~a~G~~~~i 96 (170)
T d1a4ia1 36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNA----TVTTC-HSKTA--------------HLDEEVNKGDILVVATGQPEMV 96 (170)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTC----EEEEE-CTTCS--------------SHHHHHTTCSEEEECCCCTTCB
T ss_pred ccccceEEEEecCCccchHHHHHHHhccC----ceEEE-ecccc--------------cHHHHHhhccchhhcccccccc
Confidence 45678999999965 99999999999998 99999 65432 33455789999999995 3333
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
. ...++++.++||.
T Consensus 97 ~------~~~vk~g~iviDv 110 (170)
T d1a4ia1 97 K------GEWIKPGAIVIDC 110 (170)
T ss_dssp C------GGGSCTTCEEEEC
T ss_pred c------cccccCCCeEecc
Confidence 2 2346899999986
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.43 E-value=0.0052 Score=48.45 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=54.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~~ 86 (272)
+.+-|.|. +-+|.++++.|++.|+ +|.+. +|+.++.++..+. ..+......+.++.+ .++.+++
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dv~~~~~v~~ 71 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGA----KVALV-DWNLEAGVQCKAA-------LHEQFEPQKTLFIQCDVADQQQLRD 71 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HTTTSCGGGEEEEECCTTSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHHhcCCCcEEEEEeecCCHHHHHH
Confidence 44444455 7799999999999999 99999 9999887765531 111112234444444 3456778
Q ss_pred HHHHhchhcCCCCEEEEEcC
Q 024121 87 VAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~ 106 (272)
+++++...+.+=.++|+..+
T Consensus 72 ~~~~~~~~~G~iDilVnnAg 91 (254)
T d2gdza1 72 TFRKVVDHFGRLDILVNNAG 91 (254)
T ss_dssp HHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHcCCcCeeccccc
Confidence 88777665544457787643
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.43 E-value=0.0026 Score=45.94 Aligned_cols=34 Identities=12% Similarity=0.205 Sum_probs=31.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r 46 (272)
.+.+++-|||.|.+|..-++.|++.|. +|+++ ..
T Consensus 11 l~gkrvLViGgG~va~~ka~~Ll~~GA----~VtVv-ap 44 (150)
T d1kyqa1 11 LKDKRILLIGGGEVGLTRLYKLMPTGC----KLTLV-SP 44 (150)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGTC----EEEEE-EE
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eC
Confidence 467899999999999999999999998 99998 54
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.42 E-value=0.0049 Score=42.51 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=30.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
.+||.|||.|.+|.-+|..|.+.|. +|+++ .|.
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~----~Vtlv-~~~ 54 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGI----DSYIF-ARG 54 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccc----cceee-ehh
Confidence 5789999999999999999999998 99999 774
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=96.39 E-value=0.0038 Score=44.13 Aligned_cols=93 Identities=20% Similarity=0.176 Sum_probs=62.3
Q ss_pred hHHHchHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHHHHH-
Q 024121 174 AITGLSGPAYIF----LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL- 248 (272)
Q Consensus 174 ~~~~~~~~~~~~----~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l~~l- 248 (272)
..++++.+.+.. .+.|++. .+.+.|++++++++++..+..++..+-. ..+.+.+..++|++....+.+.+
T Consensus 6 ~~~Kl~nN~l~~~~~~~~aEal~-la~~~Gid~~~~~~~l~~~~~~S~~~~~----~~~~~~~~~~~~~f~~~l~~KDl~ 80 (133)
T d1vpda1 6 NVTKLANQVIVALNIAAMSEALT-LATKAGVNPDLVYQAIRGGLAGSTVLDA----KAPMVMDRNFKPGFRIDLHIKDLA 80 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHTTSTTCCHHHHH----HHHHHHTTCCCCSSBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHhccccchhhhh----ccchhhhccCCCCchHHHHHHHHH
Confidence 345555333333 3444444 4789999999999999988766654432 23466677778988877666554
Q ss_pred ------HhCCHHHHHHHHHHHHHHHHhhc
Q 024121 249 ------EKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 249 ------~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
++.++.-.+.+...+.|+++.+.
T Consensus 81 l~~~~a~~~~~~~p~~~~~~~~~~~a~~~ 109 (133)
T d1vpda1 81 NALDTSHGVGAQLPLTAAVMEMMQALRAD 109 (133)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHc
Confidence 44477777888888888877653
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=96.39 E-value=0.0077 Score=47.58 Aligned_cols=84 Identities=11% Similarity=0.094 Sum_probs=56.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~ 85 (272)
.+++-|-|. +-||.++++.|++.|+ +|.+. +|+++++++..+ ...+...+..++.+.+ .+++++
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~l~~~~~-------~~~~~~~~~~~~~~~~Dvt~~~~v~ 71 (258)
T d1iy8a_ 4 DRVVLITGGGSGLGRATAVRLAAEGA----KLSLV-DVSSEGLEASKA-------AVLETAPDAEVLTTVADVSDEAQVE 71 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH-------HHHHHCTTCCEEEEECCTTSHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH-------HHHhhCCCCeEEEEeccCCCHHHHH
Confidence 444444455 7899999999999999 99999 999988776543 1111122345555554 345678
Q ss_pred HHHHHhchhcCCCCEEEEEc
Q 024121 86 DVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~ 105 (272)
.+++++...+.+=.++|+..
T Consensus 72 ~~~~~~~~~~G~iDiLVnnA 91 (258)
T d1iy8a_ 72 AYVTATTERFGRIDGFFNNA 91 (258)
T ss_dssp HHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHHhCCCCEEEECC
Confidence 88887766555555788753
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=96.29 E-value=0.0052 Score=49.13 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=48.5
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-----HHH---HHHHcCceeec-C------chhhhccC
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-----RRD---AFESIGVKVLS-D------NNAVVEYS 72 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-----~~~---~l~~~g~~~~~-~------~~~~~~~a 72 (272)
+.+||.|+| +|.+|+.++..|++.|| +|++. .|++. +.+ .+...++.+.. | ..+...++
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~----~V~~~-~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~ 76 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGH----PTYVL-FRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQV 76 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC----CEEEE-CCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC----EEEEE-ECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCc
Confidence 467899998 59999999999999999 99999 88642 222 22334555321 1 23456788
Q ss_pred CEEEEeeCc
Q 024121 73 DVVVFSVKP 81 (272)
Q Consensus 73 Divil~v~~ 81 (272)
+.++.+.++
T Consensus 77 ~~~~~~~~~ 85 (312)
T d1qyda_ 77 DVVISALAG 85 (312)
T ss_dssp SEEEECCCC
T ss_pred chhhhhhhh
Confidence 999988754
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.22 E-value=0.0073 Score=41.86 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=30.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
+++.|||.|.+|.-+|..|.+.|+ +|+++ .|++
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~----~Vtlv-~~~~ 65 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGY----HVKLI-HRGA 65 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTC----EEEEE-CSSS
T ss_pred CcEEEECCcHHHHHHHHHhhcccc----eEEEE-eccc
Confidence 689999999999999999999999 99999 7754
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=96.14 E-value=0.011 Score=46.59 Aligned_cols=84 Identities=17% Similarity=0.124 Sum_probs=56.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Cccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~ 83 (272)
.+.+++-|.|. +-||.++++.|++.|+ +|.+. +|++++++++.+. ..+ ...++.++.+ ..++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~----~V~i~-~r~~~~l~~~~~~-------~~~--~~~~~~~~~~D~s~~~~ 69 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGA----RVYTC-SRNEKELDECLEI-------WRE--KGLNVEGSVCDLLSRTE 69 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCCceEEEeecCCHHH
Confidence 45677777775 8899999999999999 99999 9999887765441 011 1123333333 3456
Q ss_pred HHHHHHHhchhc-CCCCEEEEEc
Q 024121 84 VKDVAMQIRPLL-SRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l-~~~~~iis~~ 105 (272)
++++++++...+ .+..++++..
T Consensus 70 ~~~~~~~~~~~~~g~idilinna 92 (258)
T d1ae1a_ 70 RDKLMQTVAHVFDGKLNILVNNA 92 (258)
T ss_dssp HHHHHHHHHHHTTSCCCEEEECC
T ss_pred HHHHHHHHHHHhCCCcEEEeccc
Confidence 777777776655 3455777653
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=96.13 E-value=0.005 Score=50.63 Aligned_cols=69 Identities=17% Similarity=0.318 Sum_probs=49.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHH-cCceee----cCc----hhhhccCCEEE
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFES-IGVKVL----SDN----NAVVEYSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~--~~l~~-~g~~~~----~~~----~~~~~~aDivi 76 (272)
+.++|.|+|. |.+|+++++.|++.|| +|++. .|++.+. +.+.. .|+.+. .+. ..+...+|.++
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~----~V~~l-~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~ 76 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGH----HVRAQ-VHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAF 76 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTC----CEEEE-ESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCC----eEEEE-ECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence 4678999985 9999999999999999 99999 8876543 33333 465532 121 23566889988
Q ss_pred EeeCcc
Q 024121 77 FSVKPQ 82 (272)
Q Consensus 77 l~v~~~ 82 (272)
...++.
T Consensus 77 ~~~~~~ 82 (350)
T d1xgka_ 77 INTTSQ 82 (350)
T ss_dssp ECCCST
T ss_pred eecccc
Confidence 877543
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=96.10 E-value=0.019 Score=45.02 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=54.1
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHHH
Q 024121 12 ILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (272)
Q Consensus 12 ~IgiI-G-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~~ 86 (272)
|+.+| | .+-||.++++.|.+.|+ +|.+. +|++++.+++.+. .-...++.++.. .++++++
T Consensus 7 K~alVTGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~~~~~~~~----------~~~~~~~~~~~~Dv~~~~~v~~ 71 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEEGA----KVMIT-GRHSDVGEKAAKS----------VGTPDQIQFFQHDSSDEDGWTK 71 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH----------HCCTTTEEEEECCTTCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH----------hCCCCcEEEEEccCCCHHHHHH
Confidence 45555 5 58899999999999999 99999 9999887766541 011224444444 3456778
Q ss_pred HHHHhchhcCCCCEEEEEc
Q 024121 87 VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~ 105 (272)
+++++...+.+=.++|+..
T Consensus 72 ~~~~~~~~~G~iDiLVnnA 90 (251)
T d1zk4a1 72 LFDATEKAFGPVSTLVNNA 90 (251)
T ss_dssp HHHHHHHHHSSCCEEEECC
T ss_pred HHHHHHHHhCCceEEEecc
Confidence 8877766555545778653
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.018 Score=45.20 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=55.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.+++-|.|. +-||.++++.|.+.|+ +|.+. +|++++++++.+..- +..++.+ .++++
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~~~~~~~~~~-------------~~~~~~~Dvs~~~~v 66 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSGA----RVVIC-DKDESGGRALEQELP-------------GAVFILCDVTQEDDV 66 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHCT-------------TEEEEECCTTSHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHhcC-------------CCeEEEccCCCHHHH
Confidence 4555666665 8999999999999999 99999 999998887765321 1223332 34567
Q ss_pred HHHHHHhchhcCCCCEEEEEcC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+++++++...+.+=.++|+..+
T Consensus 67 ~~~~~~~~~~~g~iDilVnnAG 88 (250)
T d1ydea1 67 KTLVSETIRRFGRLDCVVNNAG 88 (250)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHhcCCCCEEEeccc
Confidence 8888777665544457776543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.04 E-value=0.0073 Score=47.63 Aligned_cols=80 Identities=10% Similarity=0.077 Sum_probs=55.3
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHHH
Q 024121 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (272)
Q Consensus 12 ~IgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~~ 86 (272)
||++| |.+-||.++++.|++.|+ +|.++ +|+++++++..+. ..+ ...++.++.+ .++.+++
T Consensus 3 KValITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~l~~~~~~-------l~~--~g~~~~~~~~Dvs~~~~v~~ 68 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGL----RVFVC-ARGEEGLRTTLKE-------LRE--AGVEADGRTCDVRSVPEIEA 68 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCcEEEEEeecCCHHHHHH
Confidence 67777 557899999999999999 99999 9999887765541 111 1224444443 3456788
Q ss_pred HHHHhchhcCCCCEEEEEc
Q 024121 87 VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~ 105 (272)
+++++...+.+=.++|+..
T Consensus 69 ~~~~~~~~~g~iDilVnnA 87 (257)
T d2rhca1 69 LVAAVVERYGPVDVLVNNA 87 (257)
T ss_dssp HHHHHHHHTCSCSEEEECC
T ss_pred HHHHHHHHhCCCCEEEecc
Confidence 8887766554445777653
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.02 E-value=0.0043 Score=43.78 Aligned_cols=81 Identities=14% Similarity=0.042 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHHHHH-------HhCCHHHHHH
Q 024121 186 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL-------EKSGFRGILM 258 (272)
Q Consensus 186 ~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l~~l-------~~~~~~~~~~ 258 (272)
.+.|++. .+++.|+|++++++++..+..++.-+.. ..|..+.++.+.|+++.....+.+ ++.++...+.
T Consensus 21 ~~aEal~-la~~~Gld~~~~~~vl~~s~~~s~~~~~---~~p~~~~~~~~~~~f~~~~~~KDl~l~~~~a~~~g~~~pl~ 96 (132)
T d2cvza1 21 AAGEGLL-ALVKQGVSAEKALEVINASSGRSNATEN---LIPQRVLTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLL 96 (132)
T ss_dssp HHHHHHH-HHHHTTCCHHHHHHHHTTSTTCBHHHHH---THHHHTTTSCCCCSSBHHHHHHHHHHHHHHHTTTCCCCHHH
T ss_pred HHHHHHH-HHHHcCCCHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHhhhhhhHHHHHhhHHHHHHHHHHHcCCCChHH
Confidence 3445554 5789999999999999877666654432 235567778888988776655554 4457788888
Q ss_pred HHHHHHHHHHhh
Q 024121 259 NAVVAAAKRSRE 270 (272)
Q Consensus 259 ~~~~~~~~r~~~ 270 (272)
++..+.|+++.+
T Consensus 97 ~~~~~~~~~a~~ 108 (132)
T d2cvza1 97 RLAREVYEMAKR 108 (132)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888765
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.97 E-value=0.011 Score=46.70 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=55.1
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhh-hccCCEEEEee---CcccHH
Q 024121 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAV-VEYSDVVVFSV---KPQVVK 85 (272)
Q Consensus 12 ~IgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~aDivil~v---~~~~~~ 85 (272)
|+++| |.+-+|.++++.|++.|+ +|.+. +|++++++++.+. ..+. ....++.++.. .+++++
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~~Dvt~~~~v~ 73 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFAREGA----KVTIT-GRHAERLEETRQQ-------ILAAGVSEQNVNSVVADVTTDAGQD 73 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHHTTCCGGGEEEEECCTTSHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHhcCCCcCceEEEEccCCCHHHHH
Confidence 56666 569999999999999999 99999 9999887766541 0000 11223444443 345677
Q ss_pred HHHHHhchhcCCCCEEEEEc
Q 024121 86 DVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~ 105 (272)
++++++...+.+=.++|+..
T Consensus 74 ~~~~~~~~~~g~iDilvnnA 93 (264)
T d1spxa_ 74 EILSTTLGKFGKLDILVNNA 93 (264)
T ss_dssp HHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHhCCCCEeeccc
Confidence 77877765555555778754
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.92 E-value=0.0087 Score=47.04 Aligned_cols=79 Identities=19% Similarity=0.148 Sum_probs=53.9
Q ss_pred eEEEE-cc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHHH
Q 024121 12 ILGFI-GA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (272)
Q Consensus 12 ~IgiI-G~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~~ 86 (272)
|+++| |. +-||.++++.|.+.|+ +|.++ +|++++++++.+. ..+ ...++..+.+ .++++++
T Consensus 11 KvalITGas~GIG~a~a~~la~~Ga----~V~~~-~r~~~~l~~~~~~-------l~~--~g~~~~~~~~Dvt~~~~v~~ 76 (251)
T d2c07a1 11 KVALVTGAGRGIGREIAKMLAKSVS----HVICI-SRTQKSCDSVVDE-------IKS--FGYESSGYAGDVSKKEEISE 76 (251)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTTSS----EEEEE-ESSHHHHHHHHHH-------HHT--TTCCEEEEECCTTCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHHH
Confidence 56666 54 7899999999999999 99999 9999887766541 111 1224444444 3456778
Q ss_pred HHHHhchhcCCCCEEEEE
Q 024121 87 VAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~ 104 (272)
+++++...+.+=.++|+.
T Consensus 77 ~~~~~~~~~g~iDilvnn 94 (251)
T d2c07a1 77 VINKILTEHKNVDILVNN 94 (251)
T ss_dssp HHHHHHHHCSCCCEEEEC
T ss_pred HHHHHHHhcCCceeeeec
Confidence 888776655444577764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.92 E-value=0.0057 Score=44.93 Aligned_cols=87 Identities=13% Similarity=0.057 Sum_probs=55.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee--cCc---h-hhh-----ccCCEEEE
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDN---N-AVV-----EYSDVVVF 77 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~---~-~~~-----~~aDivil 77 (272)
..+|.|+|+ |.+|...+..+...|. ..|+++ ++++++.+.+++.|+... .+. . +.. ...|++|-
T Consensus 28 g~~vlV~G~~G~vG~~~~~~~~~~g~---~~V~~~-~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid 103 (170)
T d1jvba2 28 TKTLLVVGAGGGLGTMAVQIAKAVSG---ATIIGV-DVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVID 103 (170)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTC---CEEEEE-ESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCEEEEEeccccceeeeeeccccccc---cccccc-ccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhc
Confidence 457999995 9999988888887775 278889 999999988888775322 111 1 111 23677777
Q ss_pred eeCcccHHHHHHHhchhcCCCCEEEE
Q 024121 78 SVKPQVVKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 78 ~v~~~~~~~v~~~l~~~l~~~~~iis 103 (272)
|+.... .++.....++++..++.
T Consensus 104 ~~g~~~---~~~~a~~~l~~~G~iv~ 126 (170)
T d1jvba2 104 LNNSEK---TLSVYPKALAKQGKYVM 126 (170)
T ss_dssp SCCCHH---HHTTGGGGEEEEEEEEE
T ss_pred ccccch---HHHhhhhhcccCCEEEE
Confidence 765432 22223333455555553
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.90 E-value=0.013 Score=42.98 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=55.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-eecCch----hhh-----ccCCEEEEee
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNN----AVV-----EYSDVVVFSV 79 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~-~~~~~~----~~~-----~~aDivil~v 79 (272)
..+|.|+|+|.+|...+..+...|. ..|.+. ++++++.+.+++.|.. +....+ +.. ...|+||-|+
T Consensus 33 g~~vli~GaG~vG~~~~~~a~~~g~---~~vv~~-~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~ 108 (172)
T d1h2ba2 33 GAYVAIVGVGGLGHIAVQLLKVMTP---ATVIAL-DVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFV 108 (172)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHCC---CEEEEE-ESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred CCEEEEeCCChHHHHHHHHHHhhcC---cccccc-cchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEec
Confidence 4679999999999988887776665 267788 9999999888887753 221111 111 1367888887
Q ss_pred Cccc-HHHHHHHhchhcCCCCEEEE
Q 024121 80 KPQV-VKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 80 ~~~~-~~~v~~~l~~~l~~~~~iis 103 (272)
.... ++..+ ..++++..++.
T Consensus 109 g~~~~~~~a~----~~l~~~G~iv~ 129 (172)
T d1h2ba2 109 GSQATVDYTP----YLLGRMGRLII 129 (172)
T ss_dssp CCHHHHHHGG----GGEEEEEEEEE
T ss_pred CcchHHHHHH----HHHhCCCEEEE
Confidence 6443 33333 33445545553
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.015 Score=45.40 Aligned_cols=84 Identities=17% Similarity=0.110 Sum_probs=56.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~ 84 (272)
..+.+-|-|+ +-||.++++.|++.|+ +|.++ +|++++++++++. ..+ ...++.++.+. ++.+
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~----~V~l~-~r~~~~l~~~~~~-------~~~--~~~~~~~~~~Dvs~~~~v 71 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKS----KLVLW-DINKHGLEETAAK-------CKG--LGAKVHTFVVDCSNREDI 71 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCcEEEEEeeCCCHHHH
Confidence 3444555566 6699999999999999 99999 9999988877541 111 13455555543 3456
Q ss_pred HHHHHHhchhcCCCCEEEEEcC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+.+++.+...+.+-.++|+..+
T Consensus 72 ~~~~~~i~~~~g~idilinnag 93 (244)
T d1yb1a_ 72 YSSAKKVKAEIGDVSILVNNAG 93 (244)
T ss_dssp HHHHHHHHHHTCCCSEEEECCC
T ss_pred HHHHHHHHHHcCCCceeEeecc
Confidence 7777777665555567776543
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.0031 Score=48.92 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=46.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-------ecCchhhhccCCEEEEee
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-------LSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~aDivil~v 79 (272)
|+.++|-|.|+ |-+|+.+++.|++.|.. .+|++. +|++.+........+.. ..+..++++++|++|.|+
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~--~~v~~~-~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~ 88 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLF--SKVTLI-GRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCL 88 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCC--SEEEEE-ESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCC--CEEEEE-ecChhhhcccccceeeeeeecccccccccccccccccccccc
Confidence 35678999965 99999999999998841 279888 88654322111112211 123455677899999886
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=95.86 E-value=0.0047 Score=50.57 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=31.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
..++||+|||+|.-|.+.|..|++.|. ..+|+++ .|+.
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~--~~~v~vf-Ek~~ 39 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAEKA--FDQVTLF-ERRG 39 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTC--CSEEEEE-CSSS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHhCC--CCCEEEE-ECCC
Confidence 456899999999999999999988662 1289999 7764
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.85 E-value=0.0041 Score=51.43 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=33.7
Q ss_pred CCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 6 IPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 6 ~~~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
||.+.|||.|.| +|-+|+.++..|++.|| +|++. ++..
T Consensus 11 ~~~~nMKILVTGgsGfIGs~lv~~L~~~g~----~V~~~-d~~~ 49 (363)
T d2c5aa1 11 WPSENLKISITGAGGFIASHIARRLKHEGH----YVIAS-DWKK 49 (363)
T ss_dssp CTTSCCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCcC----EEEEE-eCCC
Confidence 678899999996 59999999999999999 99998 7643
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.84 E-value=0.0064 Score=44.84 Aligned_cols=86 Identities=17% Similarity=0.116 Sum_probs=58.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhh------hccCCEEEEeeCc
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAV------VEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~------~~~aDivil~v~~ 81 (272)
...+|.|.|. |.+|....+.....|. +|++. .+++++.+.+++.|+...-+..+. -..+|+||=|+.+
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~----~vi~~-~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~ 101 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGL----RVLAA-ASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGK 101 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC----EEEEE-ESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSCT
T ss_pred CCCEEEEEeccccchhhhhhhhccccc----ccccc-cccccccccccccccceeeehhhhhhhhhccccccccccccch
Confidence 4568999995 9999998888888898 89888 888999988888887433222221 2357888877652
Q ss_pred ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
.+...+ ..++++..++.+
T Consensus 102 -~~~~~~----~~l~~~G~~v~~ 119 (171)
T d1iz0a2 102 -EVEESL----GLLAHGGRLVYI 119 (171)
T ss_dssp -THHHHH----TTEEEEEEEEEC
T ss_pred -hHHHHH----HHHhcCCcEEEE
Confidence 344333 334455555543
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=95.83 E-value=0.0042 Score=48.64 Aligned_cols=35 Identities=11% Similarity=0.090 Sum_probs=32.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
..+||.|||.|.-|.+.|..|.++|+ +|+++ +|++
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~----~v~v~-Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGV----DVDVY-ERSP 37 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCC----CEEEE-eCCC
Confidence 46799999999999999999999999 99999 8764
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=95.82 E-value=0.005 Score=49.62 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=33.8
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
+...+.+||.|||.|.-|.+-|..|.++|+ +|.++ ++++
T Consensus 25 ~~~~~pkkV~IIGaG~aGLsaA~~L~~~G~----~V~vl-E~~~ 63 (370)
T d2iida1 25 KATSNPKHVVIVGAGMAGLSAAYVLAGAGH----QVTVL-EASE 63 (370)
T ss_dssp CCCSSCCEEEEECCBHHHHHHHHHHHHHTC----EEEEE-CSSS
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHHCCC----CEEEE-eCCC
Confidence 445566799999999999999999999999 99999 7653
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.81 E-value=0.012 Score=46.35 Aligned_cols=77 Identities=19% Similarity=0.313 Sum_probs=53.3
Q ss_pred eEEEE-cc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEee---CcccHH
Q 024121 12 ILGFI-GA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (272)
Q Consensus 12 ~IgiI-G~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v---~~~~~~ 85 (272)
|+.+| |. +-||.++++.|.+.|+ +|.+. +|+.++++++.+ .| .+++.+.+ .+++++
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~~~~-------------~~~~~~~~Dvt~~~~v~ 67 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGA----RVAIA-DINLEAARATAAEIG-------------PAACAIALDVTDQASID 67 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTE----EEEEE-ESCHHHHHHHHHHHC-------------TTEEEEECCTTCHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHhC-------------CceEEEEeeCCCHHHHH
Confidence 44455 54 8999999999999999 99999 999988877654 22 12333332 345677
Q ss_pred HHHHHhchhcCCCCEEEEEcC
Q 024121 86 DVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~ 106 (272)
++++++...+.+=.++|+..+
T Consensus 68 ~~~~~~~~~~g~iDilVnnAg 88 (256)
T d1k2wa_ 68 RCVAELLDRWGSIDILVNNAA 88 (256)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHhCCccEEEeecc
Confidence 888777655544457776543
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.027 Score=44.18 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=54.7
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHHH
Q 024121 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (272)
Q Consensus 12 ~IgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~~ 86 (272)
|+.+| |.+-+|.++++.|.+.|+ +|.+. +|++++++++.+. ..+ ...+++.+.+ .++++++
T Consensus 12 K~alITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~~~~~~~~-------l~~--~g~~~~~~~~Dvs~~~~~~~ 77 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATAGA----SVVVS-DINADAANHVVDE-------IQQ--LGGQAFACRCDITSEQELSA 77 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHH--cCCcEEEEEccCCCHHHHHH
Confidence 56666 558899999999999999 99999 9999887765431 111 1234444444 3456777
Q ss_pred HHHHhchhcCCCCEEEEEc
Q 024121 87 VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~ 105 (272)
+++++...+.+=.++|+..
T Consensus 78 ~~~~~~~~~g~iDilvnnA 96 (255)
T d1fmca_ 78 LADFAISKLGKVDILVNNA 96 (255)
T ss_dssp HHHHHHHHHSSCCEEEECC
T ss_pred HHHHHHHHcCCCCEeeeCC
Confidence 7777766555545777653
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.80 E-value=0.0039 Score=49.35 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=30.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
|+|+|||.|.-|.+.|..|.++|+ +|+++ .++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~----~V~vl-E~~ 32 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGT----DAVLL-ESS 32 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTC----CEEEE-CSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC----CEEEE-ecC
Confidence 789999999999999999999999 99999 764
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.79 E-value=0.028 Score=45.21 Aligned_cols=90 Identities=12% Similarity=0.185 Sum_probs=59.9
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Ccc
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~ 82 (272)
..+.+.+-|.|. +-||.++++.|++.|+ +|.+. +|++++.++..+. +. ....+ ....+++.+.+ .++
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga----~Vvi~-~r~~~~l~~~~~e-l~--~~~~~-~~~~~~~~~~~Dvs~~~ 79 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGS----NVVIA-SRKLERLKSAADE-LQ--ANLPP-TKQARVIPIQCNIRNEE 79 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-HH--HTSCT-TCCCCEEEEECCTTCHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-HH--hhhcc-ccCceEEEEeccCCCHH
Confidence 345555656655 7799999999999999 99999 9999887765431 00 01001 23456776665 345
Q ss_pred cHHHHHHHhchhcCCCCEEEEEc
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
+++++++++...+.+=.++|+..
T Consensus 80 ~v~~~~~~~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 80 EVNNLVKSTLDTFGKINFLVNNG 102 (297)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHhCCeEEEEeec
Confidence 67788877766555556788654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.76 E-value=0.02 Score=43.08 Aligned_cols=69 Identities=17% Similarity=0.145 Sum_probs=49.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCc-----h----hhh--ccCCEEE
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN-----N----AVV--EYSDVVV 76 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~-----~----~~~--~~aDivi 76 (272)
....+|.|+|+|.+|...+......|. ..|.+. ++++++++.+++.|+....+. . +.. ..+|++|
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga---~~Vi~~-d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vi 99 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGA---AVVIVG-DLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAV 99 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-ESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcc---cceeee-cccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEE
Confidence 345689999999999877766655564 278888 999999988888887643221 1 111 1479999
Q ss_pred EeeC
Q 024121 77 FSVK 80 (272)
Q Consensus 77 l~v~ 80 (272)
-|+-
T Consensus 100 d~vG 103 (195)
T d1kola2 100 DAVG 103 (195)
T ss_dssp ECCC
T ss_pred ECcc
Confidence 8884
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=95.76 E-value=0.035 Score=43.64 Aligned_cols=83 Identities=14% Similarity=0.130 Sum_probs=55.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.+.+-|.|. +-||.++++.|.+.|+ +|.++ +|++++++++.+. ..+ ...++..+.+ .++++
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~~-------~~~--~g~~~~~~~~Dv~~~~~v 69 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGT----AIALL-DMNREALEKAEAS-------VRE--KGVEARSYVCDVTSEEAV 69 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHT--TTSCEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHH
Confidence 4455556665 7799999999999999 99999 9999888766541 111 1234444443 34567
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
+++++++...+.+=.++|+..
T Consensus 70 ~~~~~~~~~~~g~iDilVnna 90 (260)
T d1zema1 70 IGTVDSVVRDFGKIDFLFNNA 90 (260)
T ss_dssp HHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHhCCCCeehhhh
Confidence 788877765554445777653
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.73 E-value=0.016 Score=45.30 Aligned_cols=78 Identities=13% Similarity=0.114 Sum_probs=53.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEee---CcccH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
.+.+-|-|. +-||.++++.|++.|+ +|.+. +|++++++.+.+ .+- ...++.+ .++++
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~----~V~~~-~r~~~~~~~~~~~~~~-------------~~~~~~~Dv~~~~~v 67 (244)
T d1nffa_ 6 GKVALVSGGARGMGASHVRAMVAEGA----KVVFG-DILDEEGKAMAAELAD-------------AARYVHLDVTQPAQW 67 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHTGG-------------GEEEEECCTTCHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHhhC-------------cceEEEeecCCHHHH
Confidence 344444455 7899999999999999 99999 999988877665 111 1222222 34567
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
+++++++...+.+=.++|+..
T Consensus 68 ~~~~~~~~~~~g~idilinnA 88 (244)
T d1nffa_ 68 KAAVDTAVTAFGGLHVLVNNA 88 (244)
T ss_dssp HHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHhCCCeEEEECC
Confidence 888887766555556778754
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.70 E-value=0.019 Score=45.48 Aligned_cols=85 Identities=13% Similarity=0.089 Sum_probs=55.2
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhh-hccCCEEEEee---Cccc
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAV-VEYSDVVVFSV---KPQV 83 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~aDivil~v---~~~~ 83 (272)
+.+++-|.| .+-||.++++.|.+.|+ +|.+. +|++++++++.+. ..+. ....++..+.+ .++.
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga----~V~l~-~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~~Dvs~~~~ 71 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQEGA----NVTIT-GRSSERLEETRQI-------ILKSGVSEKQVNSVVADVTTEDG 71 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHTTTCCGGGEEEEECCTTSHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHhcCCCCCceEEEEccCCCHHH
Confidence 344444445 48899999999999999 99999 9999887766541 0000 11223444443 3456
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
++.+++++...+.+=.++|+..
T Consensus 72 v~~~~~~~~~~~g~iDilvnnA 93 (272)
T d1xkqa_ 72 QDQIINSTLKQFGKIDVLVNNA 93 (272)
T ss_dssp HHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHhCCceEEEeCC
Confidence 7778877766554445777653
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=95.70 E-value=0.029 Score=43.66 Aligned_cols=80 Identities=19% Similarity=0.154 Sum_probs=53.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
+.+++-|.|. +-||.++++.|.+.|+ +|.+. +|++++++++.+ .++.. -.+|+ ..++++++
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~----~V~~~-~r~~~~l~~~~~~~~~~~--------~~~Dv----~~~~~v~~ 66 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGA----RLVAC-DIEEGPLREAAEAVGAHP--------VVMDV----ADPASVER 66 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTTTCEE--------EECCT----TCHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHcCCeE--------EEEec----CCHHHHHH
Confidence 3444555565 7799999999999999 99999 999988877665 22211 01221 13456777
Q ss_pred HHHHhchhcCCCCEEEEEc
Q 024121 87 VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~ 105 (272)
+++++...+.+=.++|+..
T Consensus 67 ~~~~~~~~~g~iDilVnnA 85 (242)
T d1ulsa_ 67 GFAEALAHLGRLDGVVHYA 85 (242)
T ss_dssp HHHHHHHHHSSCCEEEECC
T ss_pred HHHHHHHhcCCceEEEECC
Confidence 8877765554445777653
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=95.70 E-value=0.018 Score=44.94 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=47.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC----------HHHHHH------------HHH-cCceeecC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN----------LKRRDA------------FES-IGVKVLSD 64 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~----------~~~~~~------------l~~-~g~~~~~~ 64 (272)
.+.+||.|-|.|++|+..++.|.+.|. +|..+.|.+ .+.+.+ +.. .+.....+
T Consensus 29 l~g~~v~IqGfGnVG~~~a~~L~~~Ga----kvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (242)
T d1v9la1 29 IEGKTVAIQGMGNVGRWTAYWLEKMGA----KVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKN 104 (242)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC----eEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeC
Confidence 467899999999999999999999998 776441332 122211 111 23333334
Q ss_pred chhhhc-cCCEEEEeeCcccH
Q 024121 65 NNAVVE-YSDVVVFSVKPQVV 84 (272)
Q Consensus 65 ~~~~~~-~aDivil~v~~~~~ 84 (272)
.+++.. +||+++-|-....+
T Consensus 105 ~~~i~~~~~DIliPcA~~~~I 125 (242)
T d1v9la1 105 PDAIFKLDVDIFVPAAIENVI 125 (242)
T ss_dssp TTGGGGCCCSEEEECSCSSCB
T ss_pred cchhccccccEEeecchhccc
Confidence 445444 89999999654443
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.65 E-value=0.076 Score=38.60 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=51.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCc-------hhhh-----ccCCEE
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN-------NAVV-----EYSDVV 75 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~-------~~~~-----~~aDiv 75 (272)
....+|.|+|+|-+|...++.+...|. ..|++. ++++++.+..++.|+...-+. .+.. ..+|+|
T Consensus 27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~---~~vi~~-~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~v 102 (176)
T d2fzwa2 27 EPGSVCAVFGLGGVGLAVIMGCKVAGA---SRIIGV-DINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYS 102 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred CCCCEEEEecchhHHHHHHHHHHHHhc---CceEEE-cccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEe
Confidence 345689999999999988888888886 267777 999999888888886432111 1111 247899
Q ss_pred EEeeCcccH
Q 024121 76 VFSVKPQVV 84 (272)
Q Consensus 76 il~v~~~~~ 84 (272)
|-++.....
T Consensus 103 id~~G~~~~ 111 (176)
T d2fzwa2 103 FECIGNVKV 111 (176)
T ss_dssp EECSCCHHH
T ss_pred eecCCCHHH
Confidence 888865443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.61 E-value=0.08 Score=38.61 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeec---Cch----hhh-----ccCCE
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS---DNN----AVV-----EYSDV 74 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~---~~~----~~~-----~~aDi 74 (272)
.....+|.|+|+|-+|...+..+...|. ..|.+. ++++++.+..++.|....- +.+ +.. ...|+
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~---~~Vi~~-~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~ 101 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGA---ARIIGV-DINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDF 101 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCC---ceEEee-cCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCE
Confidence 4445689999999999999998888875 278888 9999999888887754221 111 111 24799
Q ss_pred EEEeeCccc-HHHHHH
Q 024121 75 VVFSVKPQV-VKDVAM 89 (272)
Q Consensus 75 vil~v~~~~-~~~v~~ 89 (272)
+|-++.... .+..+.
T Consensus 102 vid~~G~~~~~~~a~~ 117 (176)
T d2jhfa2 102 SFEVIGRLDTMVTALS 117 (176)
T ss_dssp EEECSCCHHHHHHHHH
T ss_pred EEecCCchhHHHHHHH
Confidence 998885443 344443
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=95.60 E-value=0.019 Score=46.91 Aligned_cols=70 Identities=13% Similarity=0.198 Sum_probs=50.6
Q ss_pred CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH------c-Cce--eec------Cchhh
Q 024121 5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES------I-GVK--VLS------DNNAV 68 (272)
Q Consensus 5 ~~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~------~-g~~--~~~------~~~~~ 68 (272)
+-+...++|.|.|. |-+|+.+++.|+++|+ +|.+. .|+.++...+.. . ... +.. +..++
T Consensus 6 ~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~----~V~~~-vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 80 (342)
T d1y1pa1 6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGY----KVRGT-ARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEV 80 (342)
T ss_dssp CSSCTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTT
T ss_pred CCCCCcCEEEEECCCCHHHHHHHHHHHHCcC----EEEEE-eCCchhHHHHHHhhhccccccccEEEeccccchhhhhhh
Confidence 34446789999966 9999999999999999 99988 888877665543 1 111 111 23456
Q ss_pred hccCCEEEEee
Q 024121 69 VEYSDVVVFSV 79 (272)
Q Consensus 69 ~~~aDivil~v 79 (272)
+.++|.|+-+.
T Consensus 81 ~~~~~~v~~~a 91 (342)
T d1y1pa1 81 IKGAAGVAHIA 91 (342)
T ss_dssp TTTCSEEEECC
T ss_pred cccchhhhhhc
Confidence 78899988665
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.56 E-value=0.0054 Score=45.75 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=31.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
..+||+|||.|..|...|..|.+.|+ .+|+++ +|++
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~---~~V~v~-E~~~ 38 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGY---SDITIF-EKQE 38 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTC---CCEEEE-ESSS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCC---CeEEEE-EecC
Confidence 45899999999999999999999998 149999 7764
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.014 Score=45.48 Aligned_cols=76 Identities=18% Similarity=0.347 Sum_probs=52.2
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEee---CcccHH
Q 024121 12 ILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (272)
Q Consensus 12 ~IgiI-G-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v---~~~~~~ 85 (272)
|+.+| | .+-||.++++.|.+.|+ +|.++ +|++++++++.+ .+. +...+.+ .+++++
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~----~Vv~~-~r~~~~l~~~~~~~~~-------------~~~~~~~Dv~~~~~v~ 66 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGA----KVIGT-ATSENGAQAISDYLGA-------------NGKGLMLNVTDPASIE 66 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHHHGG-------------GEEEEECCTTCHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHHhCC-------------CCcEEEEEecCHHHhh
Confidence 45555 5 58899999999999999 99999 999988877664 221 1122222 345677
Q ss_pred HHHHHhchhcCCCCEEEEEc
Q 024121 86 DVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~ 105 (272)
++++++...+.+=.++|+..
T Consensus 67 ~~~~~~~~~~g~iDilVnnA 86 (243)
T d1q7ba_ 67 SVLEKIRAEFGEVDILVNNA 86 (243)
T ss_dssp HHHHHHHHHTCSCSEEEECC
T ss_pred hhhhhhhcccCCcceehhhh
Confidence 88887766554445777653
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=95.55 E-value=0.093 Score=38.13 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=51.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCc-------hhhh-----ccCCEE
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN-------NAVV-----EYSDVV 75 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~-------~~~~-----~~aDiv 75 (272)
....+|.|+|+|-+|...+..+...|- ..|++. ++++++.+..++.|+.-.-+. .+.. ...|++
T Consensus 27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~---~~Vi~~-~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~v 102 (175)
T d1cdoa2 27 EPGSTCAVFGLGAVGLAAVMGCHSAGA---KRIIAV-DLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFS 102 (175)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred CCCCEEEEEecCCccchHHHHHHHHhh---chheee-cchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCccee
Confidence 345679999999999988888887765 268888 999999998888886422111 1111 247888
Q ss_pred EEeeCccc
Q 024121 76 VFSVKPQV 83 (272)
Q Consensus 76 il~v~~~~ 83 (272)
|-++-...
T Consensus 103 id~~G~~~ 110 (175)
T d1cdoa2 103 LECVGNVG 110 (175)
T ss_dssp EECSCCHH
T ss_pred eeecCCHH
Confidence 88885443
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.015 Score=49.32 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=53.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHH----HHHH--cCcee---
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKV--- 61 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~----~l~~--~g~~~--- 61 (272)
..||.|||+|.+|+.++++|...|+ .+++++ |.+. .|++ .+.+ .++++
T Consensus 37 ~~kVlvvG~GglG~ei~k~L~~~Gv---g~i~lv-D~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 112 (426)
T d1yovb1 37 TCKVLVIGAGGLGCELLKNLALSGF---RQIHVI-DMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPH 112 (426)
T ss_dssp HCCEEEECSSTTHHHHHHHHHTTTC---CCEEEE-CCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEE
T ss_pred cCeEEEECCCHHHHHHHHHHHHcCC---CeEEEE-ECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEee
Confidence 3689999999999999999999997 367777 5422 1222 2222 22321
Q ss_pred ----ecCchhhhccCCEEEEeeCcccHHHHHHHh
Q 024121 62 ----LSDNNAVVEYSDVVVFSVKPQVVKDVAMQI 91 (272)
Q Consensus 62 ----~~~~~~~~~~aDivil~v~~~~~~~v~~~l 91 (272)
.+...+.++++|+||.|+.....+..+.++
T Consensus 113 ~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~ 146 (426)
T d1yovb1 113 FNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGM 146 (426)
T ss_dssp CSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHH
T ss_pred eccccchHHHHHHhcchheeccCcHHHHHHHHHH
Confidence 123456788999999999776666665543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=95.53 E-value=0.033 Score=43.22 Aligned_cols=79 Identities=11% Similarity=0.144 Sum_probs=55.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEee---Cccc
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v---~~~~ 83 (272)
+.+++-|.|. +-+|.++++.|.+.|+ +|++. +|+.++++++.+ .+ .+++++.. .++.
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~~~-------------~~~~~~~~Dls~~~~ 65 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREGA----SLVAV-DREERLLAEAVAALE-------------AEAIAVVADVSDPKA 65 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTCC-------------SSEEEEECCTTSHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHcC-------------CceEEEEecCCCHHH
Confidence 3455666666 6799999999999999 99999 999988776554 22 23333333 3456
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
++++++++...+.+=.++|+..
T Consensus 66 i~~~~~~i~~~~g~iDiLinnA 87 (241)
T d2a4ka1 66 VEAVFAEALEEFGRLHGVAHFA 87 (241)
T ss_dssp HHHHHHHHHHHHSCCCEEEEGG
T ss_pred HHHHHHHHHHHhCCccEecccc
Confidence 7788887766655556777654
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=95.50 E-value=0.022 Score=44.69 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=54.0
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEee---Cccc
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v---~~~~ 83 (272)
+.+++-|.| .+-||.++++.|++.|+ +|.+. +|++++++++.+ .+ ...+++.. .+++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~Ga----~V~~~-~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~ 66 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEGA----KVAFS-DINEAAGQQLAAELG-------------ERSMFVRHDVSSEAD 66 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHC-------------TTEEEECCCTTCHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHhC-------------CCeEEEEeecCCHHH
Confidence 444444445 47799999999999999 99999 999988877654 22 12233332 3456
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
++++++++...+.+=.++|+..
T Consensus 67 ~~~~~~~~~~~~g~iDilVnnA 88 (253)
T d1hxha_ 67 WTLVMAAVQRRLGTLNVLVNNA 88 (253)
T ss_dssp HHHHHHHHHHHHCSCCEEEECC
T ss_pred HHHHHHHHHHHhCCCCeEEecc
Confidence 7777777765555555777654
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.48 E-value=0.015 Score=40.86 Aligned_cols=98 Identities=13% Similarity=0.053 Sum_probs=64.1
Q ss_pred hhHHHchHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHhcCCCcchHHHHH
Q 024121 173 DAITGLSGPAYIF----LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKS---GKHPGQLKDDVASPGGTTIAGI 245 (272)
Q Consensus 173 ~~~~~~~~~~~~~----~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~---~~~~~~l~~~~~~~~g~t~~~l 245 (272)
+..++++.+.+.+ .+.|++. .+++.|+|++++++++..+..++..+-... ...+..+.+..+.|+++.....
T Consensus 5 G~~~Kl~~N~l~~~~~~a~aEal~-la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~ 83 (134)
T d3cuma1 5 GQVAKVCNNQLLAVLMIGTAEAMA-LGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQLMA 83 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchHHHH
Confidence 3445555333333 3445544 478999999999999998887766553211 1224456666778887766555
Q ss_pred HH-------HHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 246 HE-------LEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 246 ~~-------l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
+. .++.++...+.+...+.|+++.+.
T Consensus 84 KDl~l~~~~a~~~g~~~p~~~~a~~~~~~a~~~ 116 (134)
T d3cuma1 84 KDLGLAQEAAQASASSTPMGSLALSLYRLLLKQ 116 (134)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHc
Confidence 43 355688888888888888887753
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=95.48 E-value=0.012 Score=46.52 Aligned_cols=83 Identities=14% Similarity=0.104 Sum_probs=53.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.+++-|.|. +-||.++++.|.+.|+ +|.++ +|++++++++.+. ..+ ....+.++.+ .++++
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~~-------~~~--~g~~~~~~~~Dv~~~~~v 72 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGA----SVYTC-SRNQKELNDCLTQ-------WRS--KGFKVEASVCDLSSRSER 72 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCEEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCCceEEEeeCCCHHHH
Confidence 4455555565 7799999999999999 99999 9999888766541 000 1122233332 34567
Q ss_pred HHHHHHhchhcC-CCCEEEEEc
Q 024121 85 KDVAMQIRPLLS-RKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~-~~~~iis~~ 105 (272)
+++++++...+. +=.++|+..
T Consensus 73 ~~~~~~~~~~~~~~idilvnnA 94 (259)
T d2ae2a_ 73 QELMNTVANHFHGKLNILVNNA 94 (259)
T ss_dssp HHHHHHHHHHTTTCCCEEEECC
T ss_pred HHHHHHHHHHhCCCceEEEECC
Confidence 777777765543 345777653
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.44 E-value=0.025 Score=44.86 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=53.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhh-hccCCEEEEee---CcccH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAV-VEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~aDivil~v---~~~~~ 84 (272)
.+++-|-|. +-||.++++.|++.|+ +|.+. +|++++++++.+. ..+. .....+..+.. .++++
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~~-------i~~~~~~~~~~~~~~~Dv~~~~~v 71 (274)
T d1xhla_ 4 GKSVIITGSSNGIGRSAAVIFAKEGA----QVTIT-GRNEDRLEETKQQ-------ILKAGVPAEKINAVVADVTEASGQ 71 (274)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHHTTCCGGGEEEEECCTTSHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHHcCCCCcceEEEEeeCCCHHHH
Confidence 344444454 7899999999999999 99999 9999887766541 0000 00112333333 34567
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
+++++++...+.+=.++|+..
T Consensus 72 ~~~~~~~~~~~G~iDilVnnA 92 (274)
T d1xhla_ 72 DDIINTTLAKFGKIDILVNNA 92 (274)
T ss_dssp HHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHcCCceEEEeec
Confidence 788877765554445777653
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=95.38 E-value=0.079 Score=41.61 Aligned_cols=83 Identities=11% Similarity=0.107 Sum_probs=54.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Cccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~ 83 (272)
.+.+.+-|.|. +-||.++++.|++.|+ +|.+. +|++++++++.+. +-....+.++.+ .+++
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~~~~~~~~----------l~~~~~~~~~~~Dv~~~~~ 68 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYGA----KVVIA-DIADDHGQKVCNN----------IGSPDVISFVHCDVTKDED 68 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH----------HCCTTTEEEEECCTTCHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH----------hcCCCceEEEEccCCCHHH
Confidence 34555555554 7799999999999999 99999 9999888776541 000111222222 3456
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
++.+++++...+.+=.++|+..
T Consensus 69 v~~~~~~~~~~~g~iD~lVnnA 90 (268)
T d2bgka1 69 VRNLVDTTIAKHGKLDIMFGNV 90 (268)
T ss_dssp HHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHcCCcceecccc
Confidence 7888877765554545777654
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.35 E-value=0.0074 Score=49.13 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=30.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
+.+||.|||+|.-|.+.|..|.+.|+ +|.++ +++
T Consensus 1 k~KKI~IIGaG~sGL~aA~~L~k~G~----~V~vi-Ek~ 34 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIGRQLAEKGH----QVHII-DQR 34 (314)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-ESS
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCC----CEEEE-ECC
Confidence 36899999999999999999999999 99999 554
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.26 E-value=0.063 Score=41.83 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=55.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.+++-|.|. +-||.++++.|++.|+ +|.+. +|+.++.++..+ ...+ -...+++.+.+ .++++
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~~~~~~~-------~l~~-~~g~~~~~~~~Dv~~~~~v 70 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAGC----SVVVA-SRNLEEASEAAQ-------KLTE-KYGVETMAFRCDVSNYEEV 70 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH-------HHHH-HHCCCEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH-------HHHH-HhCCcEEEEEccCCCHHHH
Confidence 4555556665 7799999999999999 99999 999888765543 1111 11234444443 34567
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
+++++++...+.+=.++|+..
T Consensus 71 ~~~~~~~~~~~g~iDiLVnnA 91 (251)
T d1vl8a_ 71 KKLLEAVKEKFGKLDTVVNAA 91 (251)
T ss_dssp HHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHcCCCCEEEECC
Confidence 788877766554445777653
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=95.24 E-value=0.058 Score=42.94 Aligned_cols=81 Identities=12% Similarity=0.225 Sum_probs=51.0
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccHHH
Q 024121 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVVKD 86 (272)
Q Consensus 12 ~IgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~~~ 86 (272)
|+.+| |.|-||.++++.|.+.|+ +|++. +|+.++.++..+. ..+ ....++.++.+. .+.++.
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga----~Vii~-~r~~~~l~~~~~~-------l~~-~~g~~~~~~~~D~~~~~~v~~ 92 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGA----QCVIA-SRKMDVLKATAEQ-------ISS-QTGNKVHAIQCDVRDPDMVQN 92 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH-HHSSCEEEEECCTTCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-ECCHHHHHHHHHH-------HHH-hcCCceEEEEecccChHHHHH
Confidence 56666 579999999999999999 99999 9998877655430 001 012333343332 334555
Q ss_pred HHHHhchhcCCCCEEEEEc
Q 024121 87 VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~ 105 (272)
++..+......=.++|+..
T Consensus 93 ~~~~~~~~~g~iDilvnnA 111 (294)
T d1w6ua_ 93 TVSELIKVAGHPNIVINNA 111 (294)
T ss_dssp HHHHHHHHTCSCSEEEECC
T ss_pred Hhhhhhhhccccchhhhhh
Confidence 6655554443444677654
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.13 E-value=0.0019 Score=49.94 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=23.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGV 34 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~ 34 (272)
|||.|||+|.+|.+.|..|.++|+
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~ 24 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYH 24 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHT
T ss_pred CEEEEECchHHHHHHHHHHHHCCC
Confidence 799999999999999999999997
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.06 E-value=0.16 Score=39.88 Aligned_cols=80 Identities=9% Similarity=0.174 Sum_probs=49.7
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHH
Q 024121 12 ILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (272)
Q Consensus 12 ~IgiI-G-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~ 85 (272)
|+.+| | .+-||.++++.|.+.|+ +|.+. +|+ .+.++++.+. ..+ ...++.++.. .++++.
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga----~Vvi~-~~~~~~~~~~~~~~-------~~~--~g~~~~~~~~D~~~~~~v~ 84 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGC----KVIVN-YANSTESAEEVVAA-------IKK--NGSDAACVKANVGVVEDIV 84 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESSCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-eCCchHHHHHHHHH-------HHh--hCCceeeEeCCCCCHHHHH
Confidence 45555 5 69999999999999999 99887 555 5555544320 001 1234444443 345677
Q ss_pred HHHHHhchhcCCCCEEEEEc
Q 024121 86 DVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~ 105 (272)
+.++++...+.+=.++|+..
T Consensus 85 ~~~~~~~~~~g~idilV~na 104 (272)
T d1g0oa_ 85 RMFEEAVKIFGKLDIVCSNS 104 (272)
T ss_dssp HHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHhCCCCcccccc
Confidence 77777766554445666553
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.03 E-value=0.037 Score=43.64 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=38.6
Q ss_pred CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 5 ~~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
|.+.+.+++-|.|+ +-||.++|+.|++.|+ +|.+. +|+.++++++.+
T Consensus 9 ~~~L~GK~alITGassGIG~aiA~~la~~G~----~Vil~-~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 9 PEMLQGKKVIVTGASKGIGREMAYHLAKMGA----HVVVT-ARSKETLQKVVS 56 (269)
T ss_dssp GGGGTTCEEEESSCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence 44456677777776 6699999999999999 99999 999998877654
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=95.00 E-value=0.045 Score=42.66 Aligned_cols=80 Identities=19% Similarity=0.166 Sum_probs=52.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
+.+++-|.| .+-||.++++.|.+.|+ +|.+. +|+++..+...+.+... -.+|+ ..+++++++
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G~----~V~~~-~~~~~~~~~~~~~~~~~--------~~~Dv----~~~~~v~~~ 66 (248)
T d2d1ya1 4 AGKGVLVTGGARGIGRAIAQAFAREGA----LVALC-DLRPEGKEVAEAIGGAF--------FQVDL----EDERERVRF 66 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSTTHHHHHHHHTCEE--------EECCT----TCHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHcCCeE--------EEEeC----CCHHHHHHH
Confidence 445555555 58999999999999999 99999 99877654333333211 01222 244567778
Q ss_pred HHHhchhcCCCCEEEEEc
Q 024121 88 AMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~ 105 (272)
++++...+.+=.++|+..
T Consensus 67 ~~~~~~~~G~iDiLVnnA 84 (248)
T d2d1ya1 67 VEEAAYALGRVDVLVNNA 84 (248)
T ss_dssp HHHHHHHHSCCCEEEECC
T ss_pred HHHHHHhcCCCCeEEEeC
Confidence 877766554545778653
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=94.93 E-value=0.016 Score=39.63 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=30.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
+||.|||.|..|.-+|..|.+.|. +|+++ .|.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~----~Vtlv-e~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGA----KTHLF-EMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSS
T ss_pred CEEEEECCChhhHHHHHHhhcccc----EEEEE-eecc
Confidence 689999999999999999999999 99999 7754
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.90 E-value=0.012 Score=46.37 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=30.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
+||.|||.|.-|.+-|..|.++|+ +|+++ ++++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~----~V~vl-E~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGL----NVTVF-EAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSC----EEEEE-CSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC----CEEEE-eCCC
Confidence 789999999999999999999999 99999 7653
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.89 E-value=0.038 Score=40.41 Aligned_cols=87 Identities=13% Similarity=0.095 Sum_probs=56.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ecC----chhhh------ccCCEEE
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSD----NNAVV------EYSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~~----~~~~~------~~aDivi 76 (272)
...+|.|+|+ |.+|....+.....|. +|++. .+++++.+.+++.|+.. .+. ..+.+ ...|+||
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~----~vi~~-~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~ 102 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGL----KILGT-AGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIII 102 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEeccccccccccccccccCc----ccccc-cccccccccccccCcccccccccccHHHHhhhhhccCCceEEe
Confidence 4568999995 9999998888888898 99888 78888888888887642 211 11111 1367777
Q ss_pred EeeCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 77 l~v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
-|+....++..+ +.++++..++.+
T Consensus 103 d~~g~~~~~~~~----~~l~~~G~iv~~ 126 (174)
T d1yb5a2 103 EMLANVNLSKDL----SLLSHGGRVIVV 126 (174)
T ss_dssp ESCHHHHHHHHH----HHEEEEEEEEEC
T ss_pred ecccHHHHHHHH----hccCCCCEEEEE
Confidence 776543333333 334455555544
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.89 E-value=0.13 Score=40.12 Aligned_cols=84 Identities=12% Similarity=0.056 Sum_probs=54.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.+++-|.|. +-||.++++.|++.|+ +|.++ +|++++++++.+. ..+ ...++..+.+ .++++
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga----~V~~~-~r~~~~l~~~~~~-------~~~--~~~~~~~~~~Dv~~~~~v 72 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGA----VIHTC-ARNEYELNECLSK-------WQK--KGFQVTGSVCDASLRPER 72 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTSHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCceEEEeccCCCHHHH
Confidence 4455555555 7799999999999999 99999 9999887766541 011 1223444443 23467
Q ss_pred HHHHHHhchhc-CCCCEEEEEcC
Q 024121 85 KDVAMQIRPLL-SRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l-~~~~~iis~~~ 106 (272)
+.+++++...+ .+=.++|+..+
T Consensus 73 ~~~~~~~~~~~~g~idilvnnAG 95 (259)
T d1xq1a_ 73 EKLMQTVSSMFGGKLDILINNLG 95 (259)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECC
T ss_pred HHHHHHHHHHhCCCccccccccc
Confidence 77777766544 23357777643
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.82 E-value=0.016 Score=39.66 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
.+++.|||.|.+|.-+|..|.+.|. +|+++ .|.+
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~----~Vtlv-e~~~ 55 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGT----KVTIL-EGAG 55 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSS
T ss_pred CCeEEEECCCccceeeeeeeccccc----EEEEE-Eecc
Confidence 3689999999999999999999999 99999 6644
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.80 E-value=0.026 Score=44.69 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=53.2
Q ss_pred CCeEEEE--cccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Cccc
Q 024121 10 SFILGFI--GAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (272)
Q Consensus 10 ~~~IgiI--G~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~ 83 (272)
.+||++| |.+-||.++++.|++. |. .|+++ +|++++.+++.+. ..+ ...++.++.+ ..+.
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~----~Vi~~-~r~~~~~~~~~~~-------l~~--~~~~~~~~~~Dvs~~~s 67 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSG----DVVLT-ARDVTRGQAAVQQ-------LQA--EGLSPRFHQLDIDDLQS 67 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS----EEEEE-ESSHHHHHHHHHH-------HHH--TTCCCEEEECCTTCHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCcEEEEEEecCCHHH
Confidence 5789999 7799999999999975 88 99999 9999887765541 011 1122233333 2345
Q ss_pred HHHHHHHhchhcCCCCEEEEE
Q 024121 84 VKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~ 104 (272)
++++++++.....+=.++|+.
T Consensus 68 v~~~~~~~~~~~g~iDiLVnN 88 (275)
T d1wmaa1 68 IRALRDFLRKEYGGLDVLVNN 88 (275)
T ss_dssp HHHHHHHHHHHHSSEEEEEEC
T ss_pred HHHHHHHHHHhcCCcEEEEEc
Confidence 677777766544333466654
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=94.72 E-value=0.027 Score=45.81 Aligned_cols=31 Identities=10% Similarity=0.182 Sum_probs=28.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS 46 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r 46 (272)
|||.|+|. |-+|+.+++.|++.|+ +|++. +|
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~----~V~~~-d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGH----DVIIL-DN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-EC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC----EEEEE-EC
Confidence 78999965 9999999999999999 99988 65
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.72 E-value=0.029 Score=38.70 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=30.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
.+|+.|||.|.+|.=+|..|.+.|. +|+++ .+++
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG~----~Vtii-~~~~ 56 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLGS----KVTVV-EFQP 56 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSS
T ss_pred CCeEEEECCCchHHHHHHHHHhhCc----ceeEE-Eecc
Confidence 3689999999999999999999999 99999 7654
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=94.71 E-value=0.1 Score=40.64 Aligned_cols=79 Identities=15% Similarity=0.083 Sum_probs=54.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEee---Cccc
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v---~~~~ 83 (272)
+.+++-|.|. +-||.++++.|.+.|+ +|.+. +|++++.+++.+ .+- .+.++.+ .+++
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~~~~~~~~~~~-------------~~~~~~~Dv~~~~~ 65 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAAGA----RVVLA-DVLDEEGAATARELGD-------------AARYQHLDVTIEED 65 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTTGG-------------GEEEEECCTTCHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHhCC-------------ceEEEEcccCCHHH
Confidence 4566666665 6799999999999999 99999 999988877654 211 1222222 3456
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
++++++++...+.+=.++|+..
T Consensus 66 v~~~~~~~~~~~g~iDilVnnA 87 (254)
T d1hdca_ 66 WQRVVAYAREEFGSVDGLVNNA 87 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHcCCccEEEecC
Confidence 7888877765554445777653
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.71 E-value=0.075 Score=39.38 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=50.9
Q ss_pred CCCCCeEEEEcc--cHHHHHHHHHHHhCCCCCCCcEEEEeCCC-----HHHHHHHHH----c--CceeecCchhhhccCC
Q 024121 7 PAESFILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFES----I--GVKVLSDNNAVVEYSD 73 (272)
Q Consensus 7 ~~~~~~IgiIG~--G~mG~~la~~l~~~g~~~~~~V~v~~~r~-----~~~~~~l~~----~--g~~~~~~~~~~~~~aD 73 (272)
+.+..||+|||= -++..+++..+.+-|. ++++. .+. ++-.+.+.+ . .+.++.++.++++++|
T Consensus 2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~----~l~l~-~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aD 76 (185)
T d1dxha2 2 PLHDISYAYLGDARNNMGNSLLLIGAKLGM----DVRIA-APKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVD 76 (185)
T ss_dssp CGGGCEEEEESCCSSHHHHHHHHHHHHTTC----EEEEE-CCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCS
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHHHcCC----EEEEE-ccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhcccccc
Confidence 456789999994 4899999999999998 99988 652 222222222 2 3567788999999999
Q ss_pred EEEEee
Q 024121 74 VVVFSV 79 (272)
Q Consensus 74 ivil~v 79 (272)
+|..-+
T Consensus 77 vVyt~~ 82 (185)
T d1dxha2 77 FVHTDV 82 (185)
T ss_dssp EEEECC
T ss_pred EEEeeh
Confidence 988765
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=94.69 E-value=0.014 Score=45.84 Aligned_cols=32 Identities=25% Similarity=0.186 Sum_probs=29.6
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
.|.|||.|.+|.+.|..|.+.|+ +|+++ +++.
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~----~V~vl-E~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENK----NTALF-ESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC----cEEEE-eCCC
Confidence 59999999999999999999999 99999 8753
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.69 E-value=0.044 Score=40.27 Aligned_cols=87 Identities=15% Similarity=0.149 Sum_probs=57.9
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee---cC--chhhh------ccCCEEE
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL---SD--NNAVV------EYSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~---~~--~~~~~------~~aDivi 76 (272)
...+|.|.| +|.+|...++.....|. ++.+. .+++++.+.+++.|+... .+ ..+.+ +..|+||
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~----~vi~~-~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~ 99 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGA----RIYTT-AGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVL 99 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTC----EEEEE-ESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCcccccchhhccccc----cceee-ecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEE
Confidence 346888887 59999999998888888 88888 788888888887775321 11 11111 2478888
Q ss_pred EeeCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 77 l~v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
-|+..+.++..+.- ++++..+|.+
T Consensus 100 d~~g~~~~~~~~~~----l~~~G~~v~~ 123 (183)
T d1pqwa_ 100 NSLAGEAIQRGVQI----LAPGGRFIEL 123 (183)
T ss_dssp ECCCTHHHHHHHHT----EEEEEEEEEC
T ss_pred ecccchHHHHHHHH----hcCCCEEEEE
Confidence 87765555554433 3444556654
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.65 E-value=0.013 Score=46.47 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=30.8
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (272)
+|.|||+|.-|.++|..|.+.|+ +|.++ ++.++
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~----~v~vl-E~~~~ 36 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGI----DNVIL-ERQTP 36 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTC----CEEEE-CSSCH
T ss_pred CEEEECcCHHHHHHHHHHHHCCC----CEEEE-eCCCC
Confidence 69999999999999999999999 99999 88754
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=94.63 E-value=0.078 Score=41.43 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=52.0
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHH
Q 024121 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (272)
Q Consensus 12 ~IgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~ 85 (272)
|+.+| |.+-||.++|+.|++.|+ +|.+. +|+ ++..+++.+ ...+ ....+++++.+ .+++++
T Consensus 5 K~alITGas~GIG~aiA~~la~~Ga----~V~~~-~r~~~~~~~~~~~-------~~~~-~~g~~~~~~~~Dv~~~~~v~ 71 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQGA----DIVLN-GFGDAAEIEKVRA-------GLAA-QHGVKVLYDGADLSKGEAVR 71 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC----EEEEE-CCSCHHHHHHHHH-------HHHH-HHTSCEEEECCCTTSHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-eCCcHHHHHHHHH-------HHHH-hcCCcEEEEECCCCCHHHHH
Confidence 45555 457799999999999999 99999 886 455554432 0001 11345555554 345677
Q ss_pred HHHHHhchhcCCCCEEEEEc
Q 024121 86 DVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~ 105 (272)
++++++...+.+=.++|+..
T Consensus 72 ~~~~~~~~~~G~iDiLVnnA 91 (260)
T d1x1ta1 72 GLVDNAVRQMGRIDILVNNA 91 (260)
T ss_dssp HHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHHhCCCcEEEeec
Confidence 88877766555545778653
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=94.61 E-value=0.068 Score=40.76 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=31.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
......||.|.|+|.-|..+++.+.+.+. .+++++ ||.
T Consensus 22 ~~l~d~riv~~GAGsAg~gia~~l~~~~~---~~i~~~-D~~ 59 (222)
T d1vl6a1 22 KKIEEVKVVVNGIGAAGYNIVKFLLDLGV---KNVVAV-DRK 59 (222)
T ss_dssp CCTTTCEEEEECCSHHHHHHHHHHHHHTC---CEEEEE-ETT
T ss_pred CChhhcEEEEEChHHHHHHHHHHHHHhcc---cceEee-cce
Confidence 34567899999999999999999999886 378888 764
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=94.56 E-value=0.03 Score=44.00 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=52.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~~ 86 (272)
+++-|.|. +-+|.++++.|++.|+ +|.+. +|+.++.+++.+. ..+ -...+++.+.+ .+++++.
T Consensus 10 K~alITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~~~~~~~~-------~~~-~~g~~~~~~~~Dv~~~~~v~~ 76 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAAGA----NVAVI-YRSAADAVEVTEK-------VGK-EFGVKTKAYQCDVSNTDIVTK 76 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTE----EEEEE-ESSCTTHHHHHHH-------HHH-HHTCCEEEEECCTTCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHH-HhCCceEEEEccCCCHHHHHH
Confidence 44444455 7799999999999999 99999 9988776654330 001 01234444444 3456777
Q ss_pred HHHHhchhcCCCCEEEEEc
Q 024121 87 VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~ 105 (272)
+++++...+.+=.++|+..
T Consensus 77 ~~~~~~~~~g~iDilVnnA 95 (260)
T d1h5qa_ 77 TIQQIDADLGPISGLIANA 95 (260)
T ss_dssp HHHHHHHHSCSEEEEEECC
T ss_pred HHHHHHHHhCCCcEecccc
Confidence 7777766554444667653
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=94.53 E-value=0.022 Score=39.24 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=30.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
.++|.|||.|.+|.-+|..|.+.|. +|+++ .+.+
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~----~Vtli-~~~~ 63 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGV----HVSLV-ETQP 63 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSS
T ss_pred CCeEEEECcchhHHHHHHHhhcccc----eEEEE-eecc
Confidence 4789999999999999999999998 99998 6654
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.49 E-value=0.13 Score=34.96 Aligned_cols=96 Identities=17% Similarity=0.200 Sum_probs=69.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhc--cCCEEEEeeCcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDivil~v~~~~~ 84 (272)
+..||.+-|. |..|+--++...+.|- +|..-.+....- .. .|+.++++..|+.+ ++|.=++.|||..+
T Consensus 6 k~trVivQGiTG~~G~~ht~~m~~yGT----~iVaGVtPgkgG----~~~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a 77 (121)
T d1oi7a1 6 RETRVLVQGITGREGQFHTKQMLTYGT----KIVAGVTPGKGG----MEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAA 77 (121)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTC----EEEEEECTTCTT----CEETTEEEESSHHHHHHHSCCSEEEECCCHHHH
T ss_pred CCCcEEEEcCCCcHHHHHHHHHHHhCC----ceEeeeecCCCC----cEEECCchHhhHHHHHHhcCCeEEEEeeCHHHH
Confidence 4468999998 9999999999999987 765432433211 11 47888888888766 68999999988764
Q ss_pred -HHHHHHhchhcCCCCEEEEEcCCCCHHHHHH
Q 024121 85 -KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (272)
Q Consensus 85 -~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~ 115 (272)
..+++.+...+ ++++..+-+++..++.+
T Consensus 78 ~dAi~EAi~agI---~liv~ITEgVPv~Dm~~ 106 (121)
T d1oi7a1 78 ADAALEAAHAGI---PLIVLITEGIPTLDMVR 106 (121)
T ss_dssp HHHHHHHHHTTC---SEEEECCSCCCHHHHHH
T ss_pred HHHHHHHHhCCC---cEEEEecCCCCHHHHHH
Confidence 55566665433 46777788999876544
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=94.46 E-value=0.19 Score=34.01 Aligned_cols=98 Identities=14% Similarity=0.196 Sum_probs=69.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhc--cCCEEEEeeCcccH-
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVV- 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDivil~v~~~~~- 84 (272)
+..||.+.|. |.-|+.-++...+.|- +|..-.+..+.-.+ -.|+.++++..|+.+ ++|.=++-|||..+
T Consensus 5 k~trVlvQGiTG~~G~~ht~~m~~yGT----~vVaGVtPgkgG~~---~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~ 77 (119)
T d2nu7a1 5 KNTKVICQGFTGSQGTFHSEQAIAYGT----KMVGGVTPGKGGTT---HLGLPVFNTVREAVAATGATASVIYVPAPFCK 77 (119)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTC----EEEEEECTTCTTEE---ETTEEEESSHHHHHHHHCCCEEEECCCGGGHH
T ss_pred CCCcEEEEcCCCcHHHHHHHHHHHhCC----ceEEEEccCCCCcc---cCCCchhhHHHHHHHHhCCCeEEEeccHHHHH
Confidence 4568999998 9999999999999997 76533244321100 157888899888766 68888888887764
Q ss_pred HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHH
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW 116 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~ 116 (272)
..+++.+...+ ++++..+-+++..++.+.
T Consensus 78 dA~~EAi~agI---~~iV~ITEgIP~~D~~~i 106 (119)
T d2nu7a1 78 DSILEAIDAGI---KLIITITEGIPTLDMLTV 106 (119)
T ss_dssp HHHHHHHHTTC---SEEEECCCCCCHHHHHHH
T ss_pred HHHHHHHHCCC---CEEEEecCCCCHHHHHHH
Confidence 55666665444 467777889998765443
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=94.45 E-value=0.032 Score=43.33 Aligned_cols=81 Identities=16% Similarity=0.098 Sum_probs=53.1
Q ss_pred CeEEEE-cc-cHHHHHHHHHHHhCCCCCCCc-------EEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee--
Q 024121 11 FILGFI-GA-GKMAESIAKGVAKSGVLPPDR-------ICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-- 79 (272)
Q Consensus 11 ~~IgiI-G~-G~mG~~la~~l~~~g~~~~~~-------V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v-- 79 (272)
++|.+| |. +-||.++++.|.+.|+ + |.++ +|++++++++.+. ..+ ...++.++.+
T Consensus 1 K~VvlITGas~GIG~aia~~la~~G~----~~~~~~~~v~~~-~r~~~~l~~~~~~-------~~~--~g~~~~~~~~Dv 66 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARAAR----HHPDFEPVLVLS-SRTAADLEKISLE-------CRA--EGALTDTITADI 66 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTT----TCTTCCEEEEEE-ESCHHHHHHHHHH-------HHT--TTCEEEEEECCT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHhCc----cccccCcEEEEE-eCCHHHHHHHHHH-------HHh--cCCcEEEEEecC
Confidence 466666 55 7799999999999998 5 7888 9999888766531 000 1223333433
Q ss_pred -CcccHHHHHHHhchhcCCCCEEEEEc
Q 024121 80 -KPQVVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 80 -~~~~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
.+++++++++++...+.+=.++|+..
T Consensus 67 t~~~~v~~~~~~~~~~~g~iDilvnnA 93 (240)
T d2bd0a1 67 SDMADVRRLTTHIVERYGHIDCLVNNA 93 (240)
T ss_dssp TSHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCcceeeccc
Confidence 34567778877766554545777653
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=94.43 E-value=0.049 Score=43.12 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=52.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEee---CcccH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
.+++-|-|. +-||.++++.|.+.|+ +|.+. +|++++++++.+ .+ .++..+.. .++++
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~l~~~~~~~~-------------~~~~~~~~Dv~~~~~~ 66 (276)
T d1bdba_ 5 GEAVLITGGASGLGRALVDRFVAEGA----KVAVL-DKSAERLAELETDHG-------------DNVLGIVGDVRSLEDQ 66 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHG-------------GGEEEEECCTTCHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHcC-------------CCeeEEecccccHHHH
Confidence 345555555 8999999999999999 99999 999988876654 11 12333332 23456
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
+++++++...+.+=.++|+..
T Consensus 67 ~~~~~~~~~~~g~idilvnnA 87 (276)
T d1bdba_ 67 KQAASRCVARFGKIDTLIPNA 87 (276)
T ss_dssp HHHHHHHHHHHSCCCEEECCC
T ss_pred HHHHHHHHHHhCCcccccccc
Confidence 777776665554445667543
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=94.43 E-value=0.031 Score=39.17 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=31.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
..+||.|||.|.+|.-+|..|.+.|. +|+++ .+.+
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~----~Vtvi-e~~~ 68 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANM----HVTLL-DTAA 68 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSS
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCc----ceeee-eecc
Confidence 35789999999999999999999999 99999 7654
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=94.35 E-value=0.072 Score=41.76 Aligned_cols=80 Identities=9% Similarity=0.098 Sum_probs=49.7
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceeecCchhhhccCCEEEEee---CcccHH
Q 024121 12 ILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (272)
Q Consensus 12 ~IgiI-G-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~ 85 (272)
|+.+| | .+-||.++++.|.+.|+ +|.+. +|+.+ .++.+.+ ...+ ...+++++.+ .++.++
T Consensus 8 K~alITGas~GIG~aia~~la~~G~----~Vv~~-~r~~~~~~~~~~~-------~~~~--~g~~~~~~~~Dvt~~~~v~ 73 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATEKA----KVVVN-YRSKEDEANSVLE-------EIKK--VGGEAIAVKGDVTVESDVI 73 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC----EEEEE-ESSCHHHHHHHHH-------HHHH--TTCEEEEEECCTTSHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-eCCcHHHHHHHHH-------HHHh--cCCcEEEEEccCCCHHHHH
Confidence 45555 4 58899999999999999 99998 77754 4444332 0000 1223444433 345677
Q ss_pred HHHHHhchhcCCCCEEEEEc
Q 024121 86 DVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~ 105 (272)
++++++...+.+=.++|+..
T Consensus 74 ~~~~~~~~~~G~iDiLVnnA 93 (261)
T d1geea_ 74 NLVQSAIKEFGKLDVMINNA 93 (261)
T ss_dssp HHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHhCCCCEeeccc
Confidence 77777665554445777654
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.33 E-value=0.12 Score=41.17 Aligned_cols=92 Identities=12% Similarity=0.157 Sum_probs=55.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeC----------CCHHHHHHHHHcCcee------ecCchhhhc
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH----------SNLKRRDAFESIGVKV------LSDNNAVVE 70 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~----------r~~~~~~~l~~~g~~~------~~~~~~~~~ 70 (272)
..+.+||.|-|.|++|+..|+.|.+.|. .|..+.+ .+.+.+.++....-.+ ..+..++..
T Consensus 33 ~L~gktvaIqGfGnVG~~~A~~L~e~Ga----kvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (293)
T d1hwxa1 33 GFGDKTFAVQGFGNVGLHSMRYLHRFGA----KCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILE 108 (293)
T ss_dssp SSTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGG
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCccccc
Confidence 4567899999999999999999999998 6654412 2445555544421110 112233333
Q ss_pred -cCCEEEEeeCcccHH-HHHHHhchhcCCCCEEEEEcCC
Q 024121 71 -YSDVVVFSVKPQVVK-DVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 71 -~aDivil~v~~~~~~-~v~~~l~~~l~~~~~iis~~~~ 107 (272)
+||+++-|-....+. +..+. + .-++|+...++
T Consensus 109 ~~~DIliPaA~~~~I~~~~a~~----l-~ak~I~EgAN~ 142 (293)
T d1hwxa1 109 VDCDILIPAASEKQLTKSNAPR----V-KAKIIAEGANG 142 (293)
T ss_dssp CCCSEEEECSSSSCBCTTTGGG----C-CCSEEECCSSS
T ss_pred CCccEEeeccccccccHHHHHH----H-hhCEEeccCCC
Confidence 899999996544432 22233 3 33577755443
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.33 E-value=0.019 Score=43.95 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=29.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCH
Q 024121 11 FILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNL 48 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~ 48 (272)
+||+|||.|.-|.+-|..|.++ |+ +|++| ++.+
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~----~V~v~-e~~~ 36 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRA----HVDIY-EKQL 36 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSC----EEEEE-CSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCC----eEEEE-eCCC
Confidence 5999999999999999999876 66 99999 8875
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.28 E-value=0.076 Score=41.43 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=47.2
Q ss_pred CeEEEE-cc-cHHHHHHHHHHHh---CCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Ccc
Q 024121 11 FILGFI-GA-GKMAESIAKGVAK---SGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (272)
Q Consensus 11 ~~IgiI-G~-G~mG~~la~~l~~---~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~ 82 (272)
-||+|| |. +-||.++++.|.+ .|+ +|.+. +|++++++++.+ .....-.+.++.++.+ .++
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G~----~Vv~~-~r~~~~l~~~~~-------~l~~~~~~~~~~~~~~Dvs~~~ 73 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPGS----VMLVS-ARSESMLRQLKE-------ELGAQQPDLKVVLAAADLGTEA 73 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTC----EEEEE-ESCHHHHHHHHH-------HHHHHCTTSEEEEEECCTTSHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCCC----EEEEE-ECCHHHHHHHHH-------HHHhhcCCceEEEEEccCCCHH
Confidence 478888 55 7899999999986 688 99999 999988877654 1111111234444444 344
Q ss_pred cHHHHHHHhch
Q 024121 83 VVKDVAMQIRP 93 (272)
Q Consensus 83 ~~~~v~~~l~~ 93 (272)
+++++++.+..
T Consensus 74 ~v~~l~~~~~~ 84 (259)
T d1oaaa_ 74 GVQRLLSAVRE 84 (259)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66777766654
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=94.25 E-value=0.018 Score=45.44 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=47.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH------HHHHH---HcCceeec-C------chhhhcc
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR------RDAFE---SIGVKVLS-D------NNAVVEY 71 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~------~~~l~---~~g~~~~~-~------~~~~~~~ 71 (272)
..+||.|+|+ |.+|+.++..|++.|+ +|++. +|++.. ...+. ..++.+.. | ..+.+..
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~----~V~~l-~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 76 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGH----PTFLL-VRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKN 76 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC----CEEEE-CCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC----eEEEE-ECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhh
Confidence 4688999986 9999999999999999 99999 886432 22222 23554321 1 2345678
Q ss_pred CCEEEEeeCc
Q 024121 72 SDVVVFSVKP 81 (272)
Q Consensus 72 aDivil~v~~ 81 (272)
++.++.+...
T Consensus 77 ~~~vi~~~~~ 86 (307)
T d1qyca_ 77 VDVVISTVGS 86 (307)
T ss_dssp CSEEEECCCG
T ss_pred ceeeeecccc
Confidence 8988888754
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=94.23 E-value=0.021 Score=45.99 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=33.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (272)
.|.+...|.|||+|.-|-++|..|.+.|+ ++.++ +++++
T Consensus 3 ~p~~~~dV~IIGAG~sGl~~a~~L~~~G~----~v~i~-Ek~~~ 41 (298)
T d1w4xa1 3 QPPEEVDVLVVGAGFSGLYALYRLRELGR----SVHVI-ETAGD 41 (298)
T ss_dssp CCCSEEEEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSSS
T ss_pred CCCCCCCEEEECccHHHHHHHHHHHhCCC----CEEEE-EcCCC
Confidence 44556789999999999999999999999 99999 87653
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.23 E-value=0.034 Score=38.33 Aligned_cols=32 Identities=19% Similarity=0.043 Sum_probs=29.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
.++.|||.|.+|.-+|..|.+.|. +|+++ .|+
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~----~Vtii-~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGL----DVTVM-VRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTC----CEEEE-ESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCC----eEEEE-Eec
Confidence 589999999999999999999998 99998 665
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.21 E-value=0.018 Score=44.96 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=29.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
++|.|||.|.-|.++|..|.+.|. .+|.++ +|++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi---~~V~V~-Er~~ 35 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGI---GKVTLL-ESSS 35 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-ESSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC---CeEEEE-eCCC
Confidence 689999999999999999999993 188899 7754
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.025 Score=43.97 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=32.7
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 12 ~IgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
|+++| |.+-||.++++.|++.|+ +|++. +|+.++.+++.+
T Consensus 6 KvalITGas~GIG~aia~~la~~G~----~V~~~-~r~~~~~~~~~~ 47 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQGA----SAVLL-DLPNSGGEAQAK 47 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECTTSSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-eCChHHHHHHHH
Confidence 45555 457899999999999999 99999 999887776554
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.16 E-value=0.059 Score=41.81 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=36.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
+.+++-|.|. +-||.++++.|.+.|+ +|.+. +|++++++++.+
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G~----~V~~~-~r~~~~l~~~~~ 49 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATGA----RVVAV-SRTQADLDSLVR 49 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-ECCHHHHHHHHH
Confidence 4566666665 8899999999999999 99999 999998887765
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.11 E-value=0.046 Score=37.72 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=30.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
.+|+.|||.|.+|.-+|..|.+.|. +|+++ .|+
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G~----~Vtlv-~~~ 54 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALGS----KTSLM-IRH 54 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSS
T ss_pred CCEEEEEcCCccHHHHHHHHhcCCc----EEEEE-eec
Confidence 3689999999999999999999999 99999 775
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=94.09 E-value=0.033 Score=45.17 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=44.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceee----cCc---h-hhhccCCEEEEeeC
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL----SDN---N-AVVEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~----~~~---~-~~~~~aDivil~v~ 80 (272)
|||.|.|. |-+|+.+++.|++.|+ .+|++. ++...+...+.+ .+++.. .+. . ...+++|+||-+.-
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~---~~V~~l-d~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~ 76 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDH---YEVYGL-DIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 76 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT---CEEEEE-ESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC---CEEEEE-eCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence 78999965 9999999999999985 178888 776555444433 333321 111 1 24568999998763
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.08 E-value=0.032 Score=38.51 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=30.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
..++|.|||.|.+|.-+|..|.+.|. +|++. .+.+
T Consensus 29 ~~k~vvViGgG~iG~E~A~~l~~~g~----~Vtli-e~~~ 63 (123)
T d1nhpa2 29 EVNNVVVIGSGYIGIEAAEAFAKAGK----KVTVI-DILD 63 (123)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSS
T ss_pred CCCEEEEECChHHHHHHHHHhhccce----EEEEE-EecC
Confidence 35789999999999999999999999 99998 6643
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.06 E-value=0.024 Score=43.41 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=29.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
+||.|||.|.-|.+.|..|.++|+ .+|+++ ++++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~---~~V~vl-E~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGI---TDLLIL-EATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTC---CCEEEE-CSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCC---CcEEEE-ECCC
Confidence 479999999999999999999995 169999 7653
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=94.02 E-value=0.071 Score=41.83 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=50.8
Q ss_pred CCCCeEEEEcc-c--HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee-Cccc
Q 024121 8 AESFILGFIGA-G--KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G--~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v-~~~~ 83 (272)
++.+++-|.|. | -||.++|+.|++.|+ +|++. +|+++..+.+.+ ..+....+.++..-+ .+..
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga----~V~i~-~r~~~~~~~~~~--------l~~~~~~~~~~~~d~~~~~~ 69 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA----TLAFT-YLNESLEKRVRP--------IAQELNSPYVYELDVSKEEH 69 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTC----EEEEE-ESSTTTHHHHHH--------HHHHTTCCCEEECCTTCHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH--------HHhhCCceeEeeecccchhh
Confidence 45677888886 5 399999999999999 99999 888643222221 111122333332222 2345
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
+.++++++...+.+-.++|...
T Consensus 70 ~~~~~~~~~~~~g~id~lV~na 91 (274)
T d2pd4a1 70 FKSLYNSVKKDLGSLDFIVHSV 91 (274)
T ss_dssp HHHHHHHHHHHTSCEEEEEECC
T ss_pred HHHHHHHHHHHcCCCCeEEeec
Confidence 6666666665554444555443
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=94.00 E-value=0.045 Score=42.58 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=50.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHH-cCceeecCchhhhccCCEEEEee---Ccc
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~-~g~~~~~~~~~~~~~aDivil~v---~~~ 82 (272)
+.+.+-|.|. +-||.++++.|.+.|+ +|.+. +|+++. .+...+ .| .++.++.+ .++
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga----~V~~~-~~~~~~~~~~~~~~~g-------------~~~~~~~~Dvs~~~ 65 (247)
T d2ew8a1 4 KDKLAVITGGANGIGRAIAERFAVEGA----DIAIA-DLVPAPEAEAAIRNLG-------------RRVLTVKCDVSQPG 65 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSCCHHHHHHHHHTT-------------CCEEEEECCTTCHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCchHHHHHHHHHcC-------------CcEEEEEeeCCCHH
Confidence 4444444455 7899999999999999 99999 887643 222111 22 23444443 345
Q ss_pred cHHHHHHHhchhcCCCCEEEEEc
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
+++.+++++...+.+=.++|+..
T Consensus 66 ~v~~~~~~~~~~~G~iDilVnnA 88 (247)
T d2ew8a1 66 DVEAFGKQVISTFGRCDILVNNA 88 (247)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 67788877766554545788753
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=93.99 E-value=0.13 Score=37.03 Aligned_cols=66 Identities=20% Similarity=0.236 Sum_probs=48.7
Q ss_pred CCCeEEEEcc--cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-----HHHHH---H-HHcC--ceeecCchhhhccCCEE
Q 024121 9 ESFILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSNL-----KRRDA---F-ESIG--VKVLSDNNAVVEYSDVV 75 (272)
Q Consensus 9 ~~~~IgiIG~--G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-----~~~~~---l-~~~g--~~~~~~~~~~~~~aDiv 75 (272)
+..||+|||= .++-.++...+.+-|. +++++ .... +-... . .+.+ +....++.++++++|+|
T Consensus 2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~----~i~~~-~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDvi 76 (161)
T d1vlva2 2 KGVKVVFMGDTRNNVATSLMIACAKMGM----NFVAC-GPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVV 76 (161)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHTTC----EEEEE-SCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEE
T ss_pred CCCEEEEEcCCccHHHHHHHHHHHHcCC----EEEEe-cchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhhe
Confidence 4679999994 5899999999999998 99888 5532 21111 1 2223 56778889999999999
Q ss_pred EEee
Q 024121 76 VFSV 79 (272)
Q Consensus 76 il~v 79 (272)
..-.
T Consensus 77 yt~~ 80 (161)
T d1vlva2 77 YTDV 80 (161)
T ss_dssp EECC
T ss_pred eccc
Confidence 9765
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.84 E-value=0.041 Score=42.24 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=32.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
...+||.|||.|.-|...|..|.+.|+ +|+++ +++.
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~----~v~l~-E~~~ 82 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGY----TVHLT-DTAE 82 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSS
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhcc----ceeeE-eecc
Confidence 355899999999999999999999999 99999 7765
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=93.84 E-value=0.1 Score=37.98 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=38.9
Q ss_pred CCCCeEEEE-cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce
Q 024121 8 AESFILGFI-GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60 (272)
Q Consensus 8 ~~~~~IgiI-G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~ 60 (272)
....+|.|+ |.|.+|....+-....|. +|++. ++++++.+.+++.|+.
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga----~Vi~~-~~s~~k~~~~~~lGa~ 75 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALGA----KLIGT-VGTAQKAQSALKAGAW 75 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTC----EEEEE-ESSHHHHHHHHHHTCS
T ss_pred CCCCEEEEEccccccchHHHHHHHHhCC----eEeec-ccchHHHHHHHhcCCe
Confidence 345689999 557799988888788888 99999 9999999888877754
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=93.82 E-value=0.23 Score=38.27 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=51.8
Q ss_pred EEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHHHH
Q 024121 13 LGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKDV 87 (272)
Q Consensus 13 IgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~~v 87 (272)
|.+| |.+-||.++++.|++.|+ +|.+.+.|+++..+++.+. ..+ ...+++++.+ .+++++++
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga----~V~i~~~~~~~~~~~~~~~-------~~~--~g~~~~~~~~Dv~~~~~v~~~ 69 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGC----KVLVNYARSAKAAEEVSKQ-------IEA--YGGQAITFGGDVSKEADVEAM 69 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHHH-------HHH--HTCEEEEEECCTTSHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC----EEEEEeCCCHHHHHHHHHH-------HHH--cCCcEEEEeCCCCCHHHHHHH
Confidence 6666 568899999999999999 9987427787777665431 001 1223444443 34567778
Q ss_pred HHHhchhcCCCCEEEEEc
Q 024121 88 AMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~ 105 (272)
++++...+.+=.++|+..
T Consensus 70 ~~~~~~~~g~iDiLVnnA 87 (244)
T d1edoa_ 70 MKTAIDAWGTIDVVVNNA 87 (244)
T ss_dssp HHHHHHHSSCCSEEEECC
T ss_pred HHHHHHHcCCCCcccccc
Confidence 877766554445777653
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.76 E-value=0.028 Score=43.82 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=33.4
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 12 ~IgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
|+.+| |.+.||.++++.|++.|+ +|.+. +|++++++++.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~----~Vi~~-~r~~~~l~~~~~ 48 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFAREGA----KVIAT-DINESKLQELEK 48 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHGGGGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHh
Confidence 45555 569999999999999999 99999 999887766554
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.74 E-value=0.037 Score=37.91 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=29.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
..++.|||.|.+|.=+|..|.+.|. +|++. .+.
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G~----~Vtiv-~~~ 54 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLGA----EVTVL-EAM 54 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESS
T ss_pred CCeEEEECCChHHHHHHHHHHHcCC----ceEEE-Eee
Confidence 3689999999999999999999999 99988 543
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=93.72 E-value=0.033 Score=43.32 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=30.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
..||.|||+|.+|+.++..|...|. .+++++ |.+.
T Consensus 30 ~~~VliiG~GglGs~va~~La~~Gv---g~i~lv-D~D~ 64 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASAGV---GNLTLL-DFDT 64 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CCCB
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC---CeEEEE-CCcc
Confidence 3689999999999999999999997 378888 7653
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=93.71 E-value=0.034 Score=44.31 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=29.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
.+|.|||.|.+|.+.|..|.+.|. .+|++. +|++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~---~~V~li-E~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGW---NNITVL-DQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC---CCEEEE-CSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCC---CcEEEE-eCCC
Confidence 479999999999999999999995 169999 8763
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.68 E-value=0.028 Score=45.10 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=30.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
|..|.|||+|.-|.+.|..|.+.|+ +|.++ +++.
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~----~V~ii-Ek~~ 34 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNK----KVLVI-EKRN 34 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTC----CEEEE-CSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhCCC----cEEEE-ECCC
Confidence 3579999999999999999999999 99999 6543
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.67 E-value=0.054 Score=36.70 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=30.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
.+|+.|||.|..|.-+|..|.+.|+ +|+++ .+.+
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~----~Vtlv-e~~~ 54 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGA----QVSVV-EARE 54 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTC----EEEEE-CSSS
T ss_pred CCeEEEECCCHHHHHHHHHHhhccc----ceEEE-eeec
Confidence 4789999999999999999999999 99998 6643
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.67 E-value=0.23 Score=34.09 Aligned_cols=97 Identities=15% Similarity=0.228 Sum_probs=70.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhc--cCCEEEEeeCcccH-
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVV- 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDivil~v~~~~~- 84 (272)
+..||-+-|. |.-|+--++...+.|- +|..-.+....-.. -.|+.++++..|+.+ ++|.=++-|||..+
T Consensus 14 k~TrVivQGiTG~~G~~ht~~m~~YGT----~iVaGVtPgKgG~~---~~giPVf~tV~eA~~~~~~daSvIfVPp~~a~ 86 (130)
T d1euca1 14 KNTKVICQGFTGKQGTFHSQQALEYGT----NLVGGTTPGKGGKT---HLGLPVFNTVKEAKEQTGATASVIYVPPPFAA 86 (130)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTC----EEEEEECTTCTTCE---ETTEEEESSHHHHHHHHCCCEEEECCCHHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHhcC----CeEEeeccCCCCcc---ccCccchhhHHHHHHhcCCcEEEEecCHHHHH
Confidence 3468999998 9999999999999997 76643244322110 157888899888876 79999999988764
Q ss_pred HHHHHHhchhcCCCCEEEEEcCCCCHHHHHH
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~ 115 (272)
..+++.+...+ ++++..+-+++..++-+
T Consensus 87 dAi~EAi~agI---~liV~ITEgIPv~Dm~~ 114 (130)
T d1euca1 87 AAINEAIDAEV---PLVVCITEGIPQQDMVR 114 (130)
T ss_dssp HHHHHHHHTTC---SEEEECCCCCCHHHHHH
T ss_pred HHHHHHHhCCC---CEEEEecCCCCHHHHHH
Confidence 55666665444 46777788999876543
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=93.61 E-value=0.024 Score=44.51 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=30.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
.|||-|.|. |-+|+.+++.|.+.|| +|+.. +|+.
T Consensus 1 ~MKIlItGasGfiG~~l~~~L~~~g~----~Vi~~-~r~~ 35 (281)
T d1vl0a_ 1 HMKILITGANGQLGREIQKQLKGKNV----EVIPT-DVQD 35 (281)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSE----EEEEE-CTTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC----EEEEe-echh
Confidence 389999986 9999999999999999 99999 8864
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=93.28 E-value=0.03 Score=42.02 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=30.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD 52 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~ 52 (272)
+||-+||.|--|+.++.+|.+.|. +..+.... |-+.+.++
T Consensus 1 ~kI~viGvGGaG~n~v~~l~~~~~-~~v~~iai-nTD~~~L~ 40 (194)
T d1w5fa1 1 LKIKVIGVGGAGNNAINRMIEIGI-HGVEFVAV-NTDLQVLE 40 (194)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCC-TTEEEEEE-ESCHHHHH
T ss_pred CeEEEEEeCchHHHHHHHHHHcCC-CceEEEEE-cCCHHHHh
Confidence 589999999999999999999875 32344555 66665543
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.045 Score=43.96 Aligned_cols=63 Identities=10% Similarity=0.110 Sum_probs=40.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHHHHH----cCceeec--CchhhhccCCEEEEe
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFES----IGVKVLS--DNNAVVEYSDVVVFS 78 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~~----~g~~~~~--~~~~~~~~aDivil~ 78 (272)
+||.|.|. |-+|+.++..|++.|+ +|++. ++. ..+.+.+.. ..+.... ....+..++|+||=+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~----~V~~~-d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~Vihl 72 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGH----EVTVV-DNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHL 72 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC----EEEEE-eCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEEC
Confidence 68999965 9999999999999999 99988 652 222222211 1223221 123344589999844
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=93.16 E-value=0.1 Score=40.68 Aligned_cols=87 Identities=16% Similarity=0.085 Sum_probs=59.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cCce---eecCchhhh--ccCCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGVK---VLSDNNAVV--EYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g~~---~~~~~~~~~--~~aDivil~v 79 (272)
..++|.=+|||.=. ++..+.+.|. +|+.+ |.+++.++..++ .|+. ...+..+.. ...|+|+...
T Consensus 120 ~g~~VLDiGcGsG~--l~i~aa~~g~----~V~gv-Dis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani 192 (254)
T d2nxca1 120 PGDKVLDLGTGSGV--LAIAAEKLGG----KALGV-DIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANL 192 (254)
T ss_dssp TTCEEEEETCTTSH--HHHHHHHTTC----EEEEE-ESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEEC
T ss_pred ccCEEEEcccchhH--HHHHHHhcCC----EEEEE-ECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhcc
Confidence 34689999998733 4445667787 99999 999987765554 3432 223333333 4689888776
Q ss_pred CcccHHHHHHHhchhcCCCCEEE
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
....+.++++.+...++||..++
T Consensus 193 ~~~~l~~l~~~~~~~LkpGG~li 215 (254)
T d2nxca1 193 YAELHAALAPRYREALVPGGRAL 215 (254)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccHHHHHHHHHHhcCCCcEEE
Confidence 66677778888888888877655
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=93.11 E-value=0.059 Score=36.71 Aligned_cols=34 Identities=15% Similarity=0.048 Sum_probs=30.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
.++|.|||.|.+|.=+|..|.+.|. +|+++ .|.+
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g~----~vt~i-~~~~ 55 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATGR----RTVML-VRTE 55 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcch----hheEe-eccc
Confidence 4789999999999999999999998 99998 7754
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.08 E-value=0.051 Score=41.10 Aligned_cols=36 Identities=8% Similarity=0.125 Sum_probs=31.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
.+.--+.|||+|.-|.+.|..|.++|+ +|.++ ++++
T Consensus 3 ~~~yDviViGaG~~Gl~~A~~La~~G~----~V~vl-E~~~ 38 (297)
T d2bcgg1 3 DTDYDVIVLGTGITECILSGLLSVDGK----KVLHI-DKQD 38 (297)
T ss_dssp CCBCSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSS
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCC----CEEEE-cCCC
Confidence 344568999999999999999999999 99999 7764
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=92.91 E-value=0.16 Score=39.45 Aligned_cols=94 Identities=13% Similarity=0.197 Sum_probs=55.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---c-cc
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---P-QV 83 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~-~~ 83 (272)
+.+.+-|.|. +-+|.++|+.|++.|. +|.+. .|+.++.+.+.+. .....+..+.+.+.. + ..
T Consensus 4 ~gK~vlITGgs~GIG~~~A~~la~~G~----~vii~-~r~~~~~~~~~~~--------~~~~~~~~~~~~~~d~~~~~~~ 70 (254)
T d1sbya1 4 TNKNVIFVAALGGIGLDTSRELVKRNL----KNFVI-LDRVENPTALAEL--------KAINPKVNITFHTYDVTVPVAE 70 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTCC----SEEEE-EESSCCHHHHHHH--------HHHCTTSEEEEEECCTTSCHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC----EEEEE-ECCcccHHHHHHH--------HhhCCCCCEEEEEeecCCCHHH
Confidence 4456666665 6799999999999999 88877 5655544433321 111223344444432 2 34
Q ss_pred HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHH
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~ 115 (272)
++++++.+.....+=.++|+..+..+.+.+++
T Consensus 71 ~~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~ 102 (254)
T d1sbya1 71 SKKLLKKIFDQLKTVDILINGAGILDDHQIER 102 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCTTCHHH
T ss_pred HHHHHHHHHHHcCCCCEEEeCCCCCCHHHHHH
Confidence 66777777665544457887655444444443
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.90 E-value=0.23 Score=35.37 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=49.7
Q ss_pred CCCeEEEEcc---cHHHHHHHHHHHhCCCCCCCcEEEEeCCC-----HHHHHHHHHc--CceeecCchhhhccCCEEEEe
Q 024121 9 ESFILGFIGA---GKMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFESI--GVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~---G~mG~~la~~l~~~g~~~~~~V~v~~~r~-----~~~~~~l~~~--g~~~~~~~~~~~~~aDivil~ 78 (272)
+..||+|||= ++...+++..+.+-|. ++.++ ... ++....+.+. .+..+.|+.++++++|+|..-
T Consensus 3 ~gl~i~~vGD~~~srV~~Sli~~~~~~g~----~~~~~-~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~ 77 (157)
T d1ml4a2 3 DGLKIGLLGDLKYGRTVHSLAEALTFYDV----ELYLI-SPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVT 77 (157)
T ss_dssp SSEEEEEESCTTTCHHHHHHHHHGGGSCE----EEEEE-CCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEEC
T ss_pred CCCEEEEEcCCccChHHHHHHHHHHhcCC----cEEEE-ccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEee
Confidence 5679999998 6889999999999998 88887 542 2223334443 356678999999999987765
Q ss_pred e
Q 024121 79 V 79 (272)
Q Consensus 79 v 79 (272)
.
T Consensus 78 ~ 78 (157)
T d1ml4a2 78 R 78 (157)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=92.90 E-value=0.11 Score=40.35 Aligned_cols=77 Identities=12% Similarity=0.125 Sum_probs=52.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
..+||++||. + +....+.+.|. +++++ +|+++ .|.......++++.+||+||+. -..-+...+
T Consensus 121 ~g~kV~vIG~--~--P~v~~l~~~~~----~~~Vl-E~~p~-------~gd~p~~~~~~lLp~aD~viiT-GsTlvN~Tl 183 (251)
T d2h1qa1 121 KGKKVGVVGH--F--PHLESLLEPIC----DLSIL-EWSPE-------EGDYPLPASEFILPECDYVYIT-CASVVDKTL 183 (251)
T ss_dssp TTSEEEEESC--C--TTHHHHHTTTS----EEEEE-ESSCC-------TTCEEGGGHHHHGGGCSEEEEE-THHHHHTCH
T ss_pred CCCEEEEEec--c--hhHHHHHhcCC----cEEEE-eCCCC-------CCCCCchHHHHhhhcCCEEEEE-echhhcCCH
Confidence 3579999986 3 57777888888 99999 99873 2333334457788999999887 233344455
Q ss_pred HHhchhcCCCCEEE
Q 024121 89 MQIRPLLSRKKLLV 102 (272)
Q Consensus 89 ~~l~~~l~~~~~ii 102 (272)
+.|..+.++...++
T Consensus 184 ~~LL~~~~~a~~vv 197 (251)
T d2h1qa1 184 PRLLELSRNARRIT 197 (251)
T ss_dssp HHHHHHTTTSSEEE
T ss_pred HHHHHhCCcCCEEE
Confidence 55555555555444
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=92.87 E-value=0.12 Score=32.26 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=38.2
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG 58 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g 58 (272)
.+..+|-|.|. |.+|....+-+...|+ +|+.. .+++++.+.+++.|
T Consensus 30 ~~~~~vlI~gasGgVG~~aiQlak~~G~----~Vi~~-t~s~~k~~~~~~lG 76 (77)
T d1o8ca2 30 PQDGEIVVTGASGGVGSTAVALLHKLGY----QVVAV-SGRESTHEYLKSLG 76 (77)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHTTC----CEEEE-ESCGGGHHHHHHHT
T ss_pred cCCCcEEEEeCCCcHHHHHHHHHHHcCC----eEEEE-ECCHHHHHHHHHCC
Confidence 34567888865 9999998888888898 99998 89999988887765
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.79 E-value=0.061 Score=42.75 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=30.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
+..||.|||+|.=|.+-|..|.++|+ +|+++ ..+
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~----~V~Vl-Ea~ 37 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGM----DVTLL-EAR 37 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTC----EEEEE-CSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC----CEEEE-eCC
Confidence 45689999999999999999999999 99999 554
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=92.79 E-value=0.042 Score=42.67 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=28.6
Q ss_pred CeEEEE-c-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024121 11 FILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (272)
Q Consensus 11 ~~IgiI-G-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (272)
|||.+| | .+-||.++++.|.+.|+ +|.+. +|+.+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga----~V~~~-~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGH----QIVGI-DIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECChH
Confidence 677777 4 58899999999999999 99988 77653
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=92.73 E-value=0.045 Score=40.74 Aligned_cols=34 Identities=6% Similarity=-0.047 Sum_probs=28.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
|||.|||.|..|..+|..|.+.+. ..+|+++ +|+
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~--~~~V~v~-~~~ 34 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHP--DAEIQWY-EKG 34 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCT--TSEEEEE-ESS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCC--CCeEEEE-eCC
Confidence 899999999999999999988642 2278888 765
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=92.72 E-value=0.17 Score=39.19 Aligned_cols=83 Identities=11% Similarity=0.169 Sum_probs=49.8
Q ss_pred CCCCeEEEEccc---HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Cc
Q 024121 8 AESFILGFIGAG---KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G---~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~ 81 (272)
++.+++-|.|++ -+|.++++.|++.|+ +|.+. +|+.+..+...+. .+ ...+..++.. .+
T Consensus 6 L~gK~alITGas~~~GIG~aiA~~la~~Ga----~V~i~-~~~~~~~~~~~~~--------~~--~~~~~~~~~~D~~~~ 70 (256)
T d1ulua_ 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA----EVALS-YQAERLRPEAEKL--------AE--ALGGALLFRADVTQD 70 (256)
T ss_dssp CTTCEEEEESCCCSSSHHHHHHHHHHHTTC----EEEEE-ESSGGGHHHHHHH--------HH--HTTCCEEEECCTTCH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCC----EEEEE-eCcHHHHHHHHHh--------hh--ccCcccccccccCCH
Confidence 345667677864 499999999999999 99988 8886544333220 00 0111122222 34
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEc
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
++++++++++...+.+=.++|+..
T Consensus 71 ~~v~~~~~~~~~~~g~iDilVnna 94 (256)
T d1ulua_ 71 EELDALFAGVKEAFGGLDYLVHAI 94 (256)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECC
T ss_pred HHHHHHHHHHHHhcCCceEEEecc
Confidence 567777777665544434667653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=92.64 E-value=0.16 Score=38.88 Aligned_cols=89 Identities=9% Similarity=0.056 Sum_probs=57.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC--cee-ecCchhh--hccCCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG--VKV-LSDNNAV--VEYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g--~~~-~~~~~~~--~~~aDivil~v 79 (272)
+.++|.=||||. |. ++..|.+.|+ +|++. |.+++-++.+++ .+ +.. ..+..++ -+..|+|+.+-
T Consensus 41 ~~~~iLDiGcGt-G~-~~~~l~~~~~----~v~gv-D~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~ 113 (251)
T d1wzna1 41 EVRRVLDLACGT-GI-PTLELAERGY----EVVGL-DLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFF 113 (251)
T ss_dssp CCCEEEEETCTT-CH-HHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECS
T ss_pred CCCEEEEeCCCC-Cc-cchhhcccce----EEEEE-eeccccccccccccccccccchheehhhhhcccccccchHhhhh
Confidence 446899999987 43 4556888888 99999 999876655443 33 332 2333321 13568877652
Q ss_pred ------CcccHHHHHHHhchhcCCCCEEE-EE
Q 024121 80 ------KPQVVKDVAMQIRPLLSRKKLLV-SV 104 (272)
Q Consensus 80 ------~~~~~~~v~~~l~~~l~~~~~ii-s~ 104 (272)
++.+...++.++...|+||.+++ +.
T Consensus 114 ~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 114 STIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 22345677888888888877554 54
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.63 E-value=0.11 Score=40.04 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=36.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
+.+++-|.|. +-||.++++.|.+.|+ +|.+. +|++++++++.+
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~ 47 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASGA----KVVAV-TRTNSDLVSLAK 47 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence 4566666666 7799999999999999 99999 999988877765
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.56 E-value=0.34 Score=37.20 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=44.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCC----------HHHHHHHHH-c-------CceeecCchhh
Q 024121 8 AESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSN----------LKRRDAFES-I-------GVKVLSDNNAV 68 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~----------~~~~~~l~~-~-------g~~~~~~~~~~ 68 (272)
.+.+||.|-|.|++|..+++.|.+ .|. .|....|.+ .+.+.+... . +.... +.++.
T Consensus 30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~----kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~-~~~~i 104 (239)
T d1gtma1 30 LKGKTIAIQGYGNAGYYLAKIMSEDFGM----KVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNI-TNEEL 104 (239)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCC----EEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEE-CHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHhcCc----ceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeee-ccccc
Confidence 567899999999999999999875 576 554321432 223322222 1 23332 33444
Q ss_pred h-ccCCEEEEeeCcccH
Q 024121 69 V-EYSDVVVFSVKPQVV 84 (272)
Q Consensus 69 ~-~~aDivil~v~~~~~ 84 (272)
. .+||+++-|-....+
T Consensus 105 ~~~~~DIl~PcA~~~~I 121 (239)
T d1gtma1 105 LELEVDVLAPAAIEEVI 121 (239)
T ss_dssp HHSCCSEEEECSCSCCB
T ss_pred ccccccEEeeccccccc
Confidence 3 389999988655443
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=92.55 E-value=0.06 Score=42.16 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=28.6
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
-|.|||.|..|.+.|..|.+.|+ +|.+. ++.
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~----~V~vi-E~~ 35 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGV----KTLLV-DAF 35 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC----cEEEE-eCC
Confidence 48899999999999999999999 99999 764
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.45 E-value=0.079 Score=36.34 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=30.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
.+++.|||.|.+|.=+|..|.+.|. +|++. .|++
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~----~Vtvi-~~~~ 58 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGS----EVTVV-EFAS 58 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTC----EEEEE-CSSS
T ss_pred CCeEEEEccchHHHHHHHHHHhcCC----eEEEE-EEcc
Confidence 3689999999999999999999998 99999 7754
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.42 E-value=0.3 Score=37.41 Aligned_cols=90 Identities=17% Similarity=0.231 Sum_probs=53.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCC----------CHHHHHHHHH-cC-------ceeecCchh
Q 024121 7 PAESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHS----------NLKRRDAFES-IG-------VKVLSDNNA 67 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r----------~~~~~~~l~~-~g-------~~~~~~~~~ 67 (272)
..+.+||.|-|.|++|+..++.|. +.|. .|+...|. +.+.+..+.+ .+ .+.. +..+
T Consensus 28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga----~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~-~~~~ 102 (234)
T d1b26a1 28 DPKKATVAVQGFGNVGQFAALLISQELGS----KVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEE 102 (234)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHHCC----EEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEE-CHHH
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHhcCC----ceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceee-cccc
Confidence 456789999999999999999996 4587 65543121 3334444433 12 2222 3345
Q ss_pred hhc-cCCEEEEeeCcccH-HHHHHHhchhcCCCCEEEEEcC
Q 024121 68 VVE-YSDVVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 68 ~~~-~aDivil~v~~~~~-~~v~~~l~~~l~~~~~iis~~~ 106 (272)
... +||+++-|-....+ .+..+.+. -++|+...+
T Consensus 103 ~~~~~~DI~~PcA~~~~I~~~~a~~l~-----~~~I~e~AN 138 (234)
T d1b26a1 103 LLELDVDILVPAALEGAIHAGNAERIK-----AKAVVEGAN 138 (234)
T ss_dssp HHTSCCSEEEECSCTTCBCHHHHTTCC-----CSEEECCSS
T ss_pred ccccccceeecchhcccccHHHHHHhh-----hceEeecCC
Confidence 554 89999988655543 34444432 346665444
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.41 E-value=0.056 Score=36.32 Aligned_cols=70 Identities=9% Similarity=0.134 Sum_probs=50.7
Q ss_pred CCeEEEEcc----------cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee
Q 024121 10 SFILGFIGA----------GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 10 ~~~IgiIG~----------G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v 79 (272)
.++|||+|+ ..-.--+...|.+.|. .|.+| |+.-...+ ...+..+..+..+....+|+|++..
T Consensus 15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~----~v~iy-DP~v~~~~--~~~~~~~~~~l~~~~~~sDiII~~~ 87 (108)
T d1dlja3 15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDI----KIIIY-EPMLNKLE--SEDQSVLVNDLENFKKQANIIVTNR 87 (108)
T ss_dssp SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSC----EEEEE-CTTCSCCC--TTCCSEECCCHHHHHHHCSEEECSS
T ss_pred CCEEEEEEEEECCCCcchhhhhHHHHHHHHhcccc----ceeee-cCCcChhH--hccCCEEEeCHHHHHhhCCEEEEcC
Confidence 358999997 4566778899999998 99999 87543211 1245667778889899999887766
Q ss_pred CcccHHH
Q 024121 80 KPQVVKD 86 (272)
Q Consensus 80 ~~~~~~~ 86 (272)
....+.+
T Consensus 88 ~~~~~~~ 94 (108)
T d1dlja3 88 YDNELQD 94 (108)
T ss_dssp CCGGGGG
T ss_pred CchHHHh
Confidence 6655543
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=92.39 E-value=0.49 Score=36.77 Aligned_cols=92 Identities=18% Similarity=0.196 Sum_probs=52.4
Q ss_pred CeEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCc---eeecCchhh-hccCCEEEEee
Q 024121 11 FILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV---KVLSDNNAV-VEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~---~~~~~~~~~-~~~aDivil~v 79 (272)
|-|++| |.+-||.++++.|.+.|+ +|.+.+.|+.+..+++.+ .+. .+..|.... ....+......
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga----~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 77 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGY----AVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSA 77 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC----EEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccc
Confidence 348888 557899999999999999 998753667766665544 121 111221111 11223333322
Q ss_pred ---CcccHHHHHHHhchhcCCCCEEEEEcC
Q 024121 80 ---KPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 80 ---~~~~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
..+.++++++++...+.+=.++|+..+
T Consensus 78 dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG 107 (284)
T d1e7wa_ 78 PVTLFTRCAELVAACYTHWGRCDVLVNNAS 107 (284)
T ss_dssp CBCHHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEecCC
Confidence 234567777776655544457776543
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.36 E-value=0.17 Score=38.87 Aligned_cols=77 Identities=18% Similarity=0.142 Sum_probs=49.1
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
.+.+++-|.|. +-||.++++.|.+.|+ +|.+. +|+.+..+.+ .. -.+|+ ..++++++
T Consensus 5 l~gK~~lITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~~~~~-----~~--------~~~Dv----~~~~~v~~ 62 (237)
T d1uzma1 5 FVSRSVLVTGGNRGIGLAIAQRLAADGH----KVAVT-HRGSGAPKGL-----FG--------VEVDV----TDSDAVDR 62 (237)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESSSCCCTTS-----EE--------EECCT----TCHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCcchhcCc-----eE--------EEEec----CCHHHHHH
Confidence 34555655565 6799999999999999 99999 8886443211 00 01111 13456777
Q ss_pred HHHHhchhcCCCCEEEEEcC
Q 024121 87 VAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~ 106 (272)
+++++...+.+=.++|+..+
T Consensus 63 ~~~~~~~~~g~iDiLVnnAG 82 (237)
T d1uzma1 63 AFTAVEEHQGPVEVLVSNAG 82 (237)
T ss_dssp HHHHHHHHHSSCSEEEEECS
T ss_pred HHHHHHHhcCCceEEEeeec
Confidence 78777665544457787643
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.34 E-value=0.05 Score=41.25 Aligned_cols=42 Identities=7% Similarity=0.181 Sum_probs=31.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD 52 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~ 52 (272)
...||.+||.|.-|+.++.+|.+.|. ...+.+.. |-+.+.++
T Consensus 14 ~~~ki~ViGvGGaG~n~v~~l~~~~~-~~v~~iai-nTD~~~L~ 55 (209)
T d2vapa1 14 TKAKITVVGCGGAGNNTITRLKMEGI-EGAKTVAI-NTDAQQLI 55 (209)
T ss_dssp TCCCEEEEEEHHHHHHHHHHHHHHTC-TTEEEEEE-ESBHHHHH
T ss_pred cCCcEEEEEeCChHHHHHHHHHHcCC-CceEEEEE-eCCHHHHh
Confidence 34789999999999999999999886 32344555 66665544
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=92.32 E-value=0.065 Score=38.64 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=30.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
.+||.|||.|..|..+|..|.+.+. ..+|+++ ++++
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~--~~~Vtli-e~~~ 37 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADP--SIEVTLI-EPNT 37 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCT--TSEEEEE-CSCS
T ss_pred CCcEEEECccHHHHHHHHHHHHcCC--CCcEEEE-ECCC
Confidence 4799999999999999999999874 2278888 7765
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=92.09 E-value=0.059 Score=43.77 Aligned_cols=37 Identities=8% Similarity=-0.035 Sum_probs=32.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR 50 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~ 50 (272)
+.+||-|.| +|-+|+.++..|++.|+ +|.++ +|+..+
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~----~V~~~-~r~~~~ 44 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGA----TVKGY-SLTAPT 44 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSCSS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCCCc
Confidence 468999997 59999999999999999 99999 887654
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=92.03 E-value=0.13 Score=39.38 Aligned_cols=41 Identities=10% Similarity=0.096 Sum_probs=33.9
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA 53 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~ 53 (272)
++.+++-|.|. +-||.++++.|.+.|+ +|.+. +|+++.+++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga----~V~~~-~r~~~~l~~ 43 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGA----EVTIC-ARNEELLKR 43 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHh
Confidence 35667777776 7799999999999999 99999 999876543
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=92.00 E-value=0.15 Score=39.71 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=27.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEE
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICT 42 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v 42 (272)
..+.+|+.|-|.|++|...++.|.+.|. +|..
T Consensus 33 ~l~g~~v~IQGfGnVG~~~a~~L~e~Ga----kvva 64 (255)
T d1bgva1 33 TLVGKTVALAGFGNVAWGAAKKLAELGA----KAVT 64 (255)
T ss_dssp CSTTCEEEECCSSHHHHHHHHHHHHHTC----EEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC----eEEE
Confidence 3466899999999999999999999998 6653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.00 E-value=0.083 Score=40.32 Aligned_cols=86 Identities=17% Similarity=0.075 Sum_probs=56.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-Cc-----------------------ee-ec
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-GV-----------------------KV-LS 63 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-g~-----------------------~~-~~ 63 (272)
...||-.+|||. | ..+..|++.|+ +|+.+ |.+++.++.+.+. +. .. ..
T Consensus 45 ~~~rvLd~GCG~-G-~~a~~LA~~G~----~V~gv-D~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 117 (229)
T d2bzga1 45 SGLRVFFPLCGK-A-VEMKWFADRGH----SVVGV-EISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCC 117 (229)
T ss_dssp CSCEEEETTCTT-C-THHHHHHHTTC----EEEEE-CSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEES
T ss_pred CCCEEEEeCCCC-c-HHHHHHHhCCC----cEEEE-eCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEc
Confidence 456899999998 4 46777889999 99999 9999888766541 11 11 11
Q ss_pred Cchhh----hccCCEEEEe-----eCcccHHHHHHHhchhcCCCCEE
Q 024121 64 DNNAV----VEYSDVVVFS-----VKPQVVKDVAMQIRPLLSRKKLL 101 (272)
Q Consensus 64 ~~~~~----~~~aDivil~-----v~~~~~~~v~~~l~~~l~~~~~i 101 (272)
|..+. ....|+|+.+ ++++..+..+..+...++|+..+
T Consensus 118 d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~ 164 (229)
T d2bzga1 118 SIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQY 164 (229)
T ss_dssp CGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEE
T ss_pred chhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceE
Confidence 21111 1234666533 35566677777777778887753
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=91.86 E-value=0.11 Score=40.44 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcc-cH--HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH
Q 024121 7 PAESFILGFIGA-GK--MAESIAKGVAKSGVLPPDRICTAVHSNLKRR 51 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~--mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~ 51 (272)
.++.+++-|.|+ |. ||.++|+.|.+.|. +|.+. +|+.++.
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga----~Vil~-~~~~~~~ 45 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA----QLVLT-GFDRLRL 45 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC----EEEEE-ECSCHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC----EEEEE-eCChHHH
Confidence 356778888896 65 99999999999999 99999 8887665
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=91.83 E-value=0.14 Score=36.47 Aligned_cols=63 Identities=21% Similarity=0.219 Sum_probs=47.8
Q ss_pred CCCeEEEEcc---cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee
Q 024121 9 ESFILGFIGA---GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~---G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v 79 (272)
+.+||+|||= +++..+++..+.+-|. ++.+. .+.. .. ..+..+.+..+.+++++++|+|.+-.
T Consensus 2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~----~~~i~-~P~~--~~-~~~~~~~~~~~~~ea~~~aDviy~~r 67 (151)
T d2at2a2 2 KGLTVSIHGDIKHSRVARSNAEVLTRLGA----RVLFS-GPSE--WQ-DEENTFGTYVSMDEAVESSDVVMLLR 67 (151)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHcCC----ccccc-CCch--hh-ccccceeEEEechhccccCceeeeeE
Confidence 4689999997 6899999999999998 88877 5432 11 11245667788899999999987653
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=91.75 E-value=0.035 Score=43.36 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=27.3
Q ss_pred EEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH
Q 024121 13 LGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR 50 (272)
Q Consensus 13 IgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~ 50 (272)
+++| |.+-||.++++.|+++|+ +|.+. +|+.++
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~----~Vvi~-~r~~~~ 37 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGF----RVVVH-YRHSEG 37 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC----EEEEE-ESSCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCchH
Confidence 4566 457799999999999999 99999 887554
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=91.71 E-value=0.048 Score=44.38 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=27.0
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEE
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTA 43 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~ 43 (272)
++|||-|.| +|-+|+.++..|++.|+ +|.+.
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~----~v~v~ 32 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHP----DVHVT 32 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCT----TCEEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCC----CeEEE
Confidence 579999997 69999999999999998 76555
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=91.62 E-value=0.098 Score=36.03 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=30.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
..++.|||.|.+|.=+|..|.+.|. +|++. .+.+
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~----~Vtiv-e~~~ 59 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGS----RLDVV-EMMD 59 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTC----EEEEE-CSSS
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCC----EEEEE-Eeec
Confidence 3689999999999999999999998 99999 7654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=91.55 E-value=0.34 Score=35.68 Aligned_cols=86 Identities=15% Similarity=0.116 Sum_probs=56.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cCc---ee-ecCchhh--hccCCEEEEee
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGV---KV-LSDNNAV--VEYSDVVVFSV 79 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g~---~~-~~~~~~~--~~~aDivil~v 79 (272)
..||-=|||| .|. .+..|.+.|+ +|+.+ |.+++.++.+++ .++ .. ..+..+. -...|+|+..-
T Consensus 31 ~grvLDiGcG-~G~-~~~~la~~g~----~v~gv-D~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~ 103 (198)
T d2i6ga1 31 PGRTLDLGCG-NGR-NSLYLAANGY----DVTAW-DKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTV 103 (198)
T ss_dssp SCEEEEETCT-TSH-HHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEES
T ss_pred CCcEEEECCC-CCH-HHHHHHHHhh----hhccc-cCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEee
Confidence 3589999998 444 5567788898 99999 999877665443 333 22 1222221 13458887542
Q ss_pred -----CcccHHHHHHHhchhcCCCCEEE
Q 024121 80 -----KPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 80 -----~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
|+.....++.++...++|+..++
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 131 (198)
T d2i6ga1 104 VMMFLEAQTIPGLIANMQRCTKPGGYNL 131 (198)
T ss_dssp CGGGSCTTHHHHHHHHHHHTEEEEEEEE
T ss_pred eeecCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 45567788888888888876554
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.46 E-value=0.046 Score=41.61 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=29.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCC---CCCcEEEEeCCCH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVL---PPDRICTAVHSNL 48 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~---~~~~V~v~~~r~~ 48 (272)
.||+|||+|.-|-+-|..|.++||- ...+|++| ++.+
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~-E~~~ 42 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDML-EMLP 42 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEE-ESSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEE-ecCC
Confidence 5899999999999999999998840 01169999 7764
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=91.29 E-value=0.33 Score=35.55 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=49.0
Q ss_pred CCCCeEEEEccc--HHHHHHHHHHHhCCCCCCCcEEEEeCCCH-----HH---HHHHH-HcC--ceeecCchhhhccCCE
Q 024121 8 AESFILGFIGAG--KMAESIAKGVAKSGVLPPDRICTAVHSNL-----KR---RDAFE-SIG--VKVLSDNNAVVEYSDV 74 (272)
Q Consensus 8 ~~~~~IgiIG~G--~mG~~la~~l~~~g~~~~~~V~v~~~r~~-----~~---~~~l~-~~g--~~~~~~~~~~~~~aDi 74 (272)
.+..||+|+|=| ++..+++..+..-|. +++++ .... +- ++... ..| +..+.+..+++.++|+
T Consensus 3 ~~~l~i~~vGD~~nnv~~Sli~~~~~~g~----~l~~~-~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDv 77 (183)
T d1duvg2 3 FNEMTLVYAGDARNNMGNSMLEAAALTGL----DLRLV-APQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADF 77 (183)
T ss_dssp GGGCEEEEESCTTSHHHHHHHHHHHHHCC----EEEEE-CCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSE
T ss_pred cCCCEEEEEcCCccHHHHHHHHHHHHcCC----EEEEE-echHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCE
Confidence 467899999955 799999999999898 99988 5421 11 12222 234 4567888999999999
Q ss_pred EEEee
Q 024121 75 VVFSV 79 (272)
Q Consensus 75 vil~v 79 (272)
|..-+
T Consensus 78 vyt~~ 82 (183)
T d1duvg2 78 IYTDV 82 (183)
T ss_dssp EEECC
T ss_pred EEEEe
Confidence 98766
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=91.28 E-value=0.033 Score=37.37 Aligned_cols=27 Identities=7% Similarity=0.064 Sum_probs=23.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGV 34 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~ 34 (272)
...++|.|||.|+=|.=++..|.+.+-
T Consensus 30 f~gK~VlVVG~g~Sa~dia~~l~~~ak 56 (107)
T d2gv8a2 30 FVGESVLVVGGASSANDLVRHLTPVAK 56 (107)
T ss_dssp GTTCCEEEECSSHHHHHHHHHHTTTSC
T ss_pred cCCCeEEEECCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999987654
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=91.27 E-value=0.072 Score=41.25 Aligned_cols=41 Identities=22% Similarity=0.092 Sum_probs=34.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l 54 (272)
+...|.|||.|.-|...|..+.+.|+ +|.++ ++++.--.++
T Consensus 3 ~~~DViIIGaG~aGl~aA~~la~~G~----~V~vl-Ek~~~~G~k~ 43 (253)
T d2gqfa1 3 QYSENIIIGAGAAGLFCAAQLAKLGK----SVTVF-DNGKKIGRKI 43 (253)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSSSSCHHH
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCC----cEEEE-ecCCCCCCce
Confidence 34569999999999999999999999 99999 8886543343
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.25 E-value=0.11 Score=37.80 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=21.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSG 33 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g 33 (272)
++.+|+++|+|++|+.+++.|.+..
T Consensus 3 k~i~I~l~G~G~VG~~l~~~l~~~~ 27 (168)
T d1ebfa1 3 KVVNVAVIGAGVVGSAFLDQLLAMK 27 (168)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHCC
T ss_pred CEEEEEEEeCCHHHHHHHHHHHHhH
Confidence 4568999999999999999988754
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.22 E-value=0.36 Score=36.05 Aligned_cols=105 Identities=8% Similarity=0.001 Sum_probs=56.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~ 89 (272)
|||.++|.+.+|......|.++|+ +|. ++ .+...+-++ ....+..+.+.+..+-+.....-.-+++++
T Consensus 1 Mkiv~~~~~~~g~~~l~~L~~~g~----~I~~Vv-t~~~~~~~~------~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~ 69 (203)
T d2blna2 1 MKTVVFAYHDMGCLGIEALLAAGY----EISAIF-THTDNPGEK------AFYGSVARLAAERGIPVYAPDNVNHPLWVE 69 (203)
T ss_dssp CEEEEEECHHHHHHHHHHHHHTTC----EEEEEE-CCCC------------CCCCHHHHHHHHTCCEECCSCCCSHHHHH
T ss_pred CeEEEEecCHHHHHHHHHHHHCCC----CEEEEE-cCCCCCCcc------cccCHHHHHHHHcCCcceecccccchhhhh
Confidence 799999999999999999999999 885 44 543321110 011233444444444444433222234444
Q ss_pred HhchhcCCCCEEEEEcCC-CCHHHHHHHhCCCCEEEEccCc
Q 024121 90 QIRPLLSRKKLLVSVAAG-VKLKDLQEWTGHSRFIRVMPNT 129 (272)
Q Consensus 90 ~l~~~l~~~~~iis~~~~-~~~~~l~~~~~~~~~~~~~p~~ 129 (272)
.+.. .+++ ++++..-+ +-.+.+-+..+ ..++.+||..
T Consensus 70 ~i~~-~~~D-lii~~g~~~ii~~~il~~~~-~~~iN~H~sl 107 (203)
T d2blna2 70 RIAQ-LSPD-VIFSFYYRHLIYDEILQLAP-AGAFNLHGSL 107 (203)
T ss_dssp HHHH-TCCS-EEEEESCCSCCCHHHHTTCT-TCEEEEESSC
T ss_pred hhhh-hccc-ceeeeecccchhcccchhhH-HHHHHHhhhc
Confidence 4443 3455 56555322 32333333322 3577788764
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.17 E-value=0.032 Score=42.04 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=27.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
.+||.|+|. |.+|+.+++.|.+.|+. .+|... .|++
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~--~~v~~~-~r~~ 38 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTL--AKVIAP-ARKA 38 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTC--CEEECC-BSSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCe--EEEEEE-eCCc
Confidence 378999987 99999999999999971 134444 5543
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.00 E-value=0.23 Score=38.59 Aligned_cols=86 Identities=15% Similarity=0.110 Sum_probs=51.9
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Cc
Q 024121 6 IPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KP 81 (272)
Q Consensus 6 ~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~ 81 (272)
+|...+++-|.|. +-+|.++++.|++.|+ +|++.++|+.+..+++.+. ..+ ...+++++.+ .+
T Consensus 2 ~~L~GK~alITGas~GIG~aia~~la~~G~----~Vvi~~~~~~~~~~~~~~~-------~~~--~g~~~~~~~~D~~~~ 68 (259)
T d1ja9a_ 2 KPLAGKVALTTGAGRGIGRGIAIELGRRGA----SVVVNYGSSSKAAEEVVAE-------LKK--LGAQGVAIQADISKP 68 (259)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHHH-------HHH--TTCCEEEEECCTTSH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC----EEEEEcCCChHHHHHHHHH-------HHH--cCCCceEecCCCCCH
Confidence 4556666666655 7799999999999999 9987427777666554430 000 1234444443 23
Q ss_pred ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
+.+++.++++......=.++|+.
T Consensus 69 ~~v~~~~~~~~~~~g~idilinn 91 (259)
T d1ja9a_ 69 SEVVALFDKAVSHFGGLDFVMSN 91 (259)
T ss_dssp HHHHHHHHHHHHHHSCEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCcEEEec
Confidence 45667676665544333355654
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=90.96 E-value=0.11 Score=37.92 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=32.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES 56 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~ 56 (272)
|||||=|.|++|..+.+.|.+.++ +|...++. +.+....|.+
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~i----~iv~INd~~~~~~~ayLl~ 43 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRGV----EVALINDLTDNKTLAHLLK 43 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC----CEEEEECSSCHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHhcCCC----EEEEECCCcchhhhhheee
Confidence 699999999999999999998887 88877444 2344555555
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=90.95 E-value=0.13 Score=39.76 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=31.2
Q ss_pred CCCeEEEEcccH---HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH
Q 024121 9 ESFILGFIGAGK---MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA 53 (272)
Q Consensus 9 ~~~~IgiIG~G~---mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~ 53 (272)
+.+++-|.|.+. +|.++|+.|++.|+ +|.+. +|+.+..+.
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~G~----~V~i~-~~~~~~~~~ 46 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHREGA----ELAFT-YQNDKLKGR 46 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTC----EEEEE-ESSTTTHHH
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHcCC----EEEEE-eCCHHHHHH
Confidence 456677777653 88999999999999 99999 887654433
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=90.90 E-value=0.22 Score=36.33 Aligned_cols=47 Identities=13% Similarity=0.185 Sum_probs=32.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeC-CCHHHHHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH-SNLKRRDAFES 56 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~-r~~~~~~~l~~ 56 (272)
.|||||=|.|++|..+.+.+.+.+.-+.-+|...++ .+++....|.+
T Consensus 1 tikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlk 48 (173)
T d1obfo1 1 TIRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTR 48 (173)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHH
T ss_pred CeEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhc
Confidence 379999999999999999988654312225666634 34555666655
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.78 E-value=0.3 Score=34.67 Aligned_cols=66 Identities=14% Similarity=0.335 Sum_probs=45.6
Q ss_pred CCCeEEEEcc---cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHH--cCceeecCchhhhccCCEEEEe
Q 024121 9 ESFILGFIGA---GKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES--IGVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~---G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~--~g~~~~~~~~~~~~~aDivil~ 78 (272)
+..||+|||= +++..+++..+.+-|. ++.++...... ....+.. .++..+.++.++++++|+|.+.
T Consensus 2 ~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~ 74 (153)
T d1pg5a2 2 DGLVFALLGDLKYARTVNSLLRILTRFRP----KLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT 74 (153)
T ss_dssp TTCEEEEEECCSSCHHHHHHHHHGGGSCC----SEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHHHcCC----eeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEe
Confidence 5689999997 5589999999999888 76544132211 1111222 3466778899999999988754
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.76 E-value=0.64 Score=40.05 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=28.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r 46 (272)
..+|.+||+|.+|+-++++|...|. .+++++ |.
T Consensus 25 ~s~VlvvG~gglG~Ei~knLvl~GV---g~itiv-D~ 57 (529)
T d1yova1 25 SAHVCLINATATGTEILKNLVLPGI---GSFTII-DG 57 (529)
T ss_dssp HCEEEECCCSHHHHHHHHHHHTTTC---SEEEEE-CC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhcC---CEEEEE-cC
Confidence 4689999999999999999999997 378887 64
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=90.69 E-value=0.17 Score=39.96 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=35.8
Q ss_pred CCCCCCCCCeEEEEccc---HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH
Q 024121 3 AFPIPAESFILGFIGAG---KMAESIAKGVAKSGVLPPDRICTAVHSNLKR 50 (272)
Q Consensus 3 ~~~~~~~~~~IgiIG~G---~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~ 50 (272)
++|-.++.+++-|.|++ -||.++++.|++.|. +|.+. +|++..
T Consensus 1 ~~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga----~Vvi~-~~~~~~ 46 (297)
T d1d7oa_ 1 GLPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGA----EILVG-TWVPAL 46 (297)
T ss_dssp CCCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTC----EEEEE-EEHHHH
T ss_pred CCCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCC----EEEEE-eCchhh
Confidence 45667778888888986 499999999999999 99998 887643
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=90.63 E-value=0.42 Score=36.94 Aligned_cols=90 Identities=12% Similarity=0.137 Sum_probs=54.8
Q ss_pred CCCeEEEEcc--cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC----cee-ecCchhhhc--cCCEE
Q 024121 9 ESFILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG----VKV-LSDNNAVVE--YSDVV 75 (272)
Q Consensus 9 ~~~~IgiIG~--G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g----~~~-~~~~~~~~~--~aDiv 75 (272)
..+||.=+|+ |.+...+++.+...| .|+.+ +++++.++.+++ .+ +.. ..|..+... ..|.|
T Consensus 85 pG~rVLEiG~GsG~lt~~la~~v~~~g-----~V~~v-D~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V 158 (250)
T d1yb2a1 85 PGMDILEVGVGSGNMSSYILYALNGKG-----TLTVV-ERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAV 158 (250)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSS-----EEEEE-CSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEE
T ss_pred CcCEEEEeeeeCcHHHHHHHHHhCCCc-----EEEEE-ECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeee
Confidence 3478888887 555666676665555 79999 999987766654 21 222 223333332 47999
Q ss_pred EEeeCcccHHHHHHHhchhcCCCCEEEEEcC
Q 024121 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
|+-+|... ++++.+...|+||..++..+.
T Consensus 159 ~ld~p~p~--~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 159 IADIPDPW--NHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp EECCSCGG--GSHHHHHHTEEEEEEEEEEES
T ss_pred eecCCchH--HHHHHHHHhcCCCceEEEEeC
Confidence 98776431 234444455677777775444
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=90.36 E-value=0.32 Score=37.49 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=50.7
Q ss_pred EEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHHHHhch
Q 024121 15 FIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRP 93 (272)
Q Consensus 15 iIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~~l~~ 93 (272)
|-|. +-+|.++|..|.+.|+ +|.+. +|+.++.+++.+.+. ....+|+ +..++++++++++..
T Consensus 5 VTGas~GiG~aiA~~la~~Ga----~V~i~-~r~~~~~~~~~~~~~--------~~~~~dv----~~~~~~~~~~~~~~~ 67 (252)
T d1zmta1 5 VTNVKHFGGMGSALRLSEAGH----TVACH-DESFKQKDELEAFAE--------TYPQLKP----MSEQEPAELIEAVTS 67 (252)
T ss_dssp ESSTTSTTHHHHHHHHHHTTC----EEEEC-CGGGGSHHHHHHHHH--------HCTTSEE----CCCCSHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHhhhC--------cEEEecc----CCHHHHHHHHHHHHH
Confidence 3455 5699999999999999 99999 999888777654211 1123442 245677788877766
Q ss_pred hcCCCCEEEEEc
Q 024121 94 LLSRKKLLVSVA 105 (272)
Q Consensus 94 ~l~~~~~iis~~ 105 (272)
.+.+=.++|+..
T Consensus 68 ~~G~iDiLVnNA 79 (252)
T d1zmta1 68 AYGQVDVLVSND 79 (252)
T ss_dssp HHSCCCEEEEEC
T ss_pred HcCCCCEEEECC
Confidence 554445777653
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=90.33 E-value=0.19 Score=34.58 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=55.9
Q ss_pred CCCCCCCCeEEEEcccH-----------HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccC
Q 024121 4 FPIPAESFILGFIGAGK-----------MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72 (272)
Q Consensus 4 ~~~~~~~~~IgiIG~G~-----------mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~a 72 (272)
||+..+.+||-|||.|. .+...++.|.+.|+ ++.+. |.||+.. ..|. .-+
T Consensus 1 mp~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~----~~ili-N~NP~TV----------std~----d~a 61 (127)
T d1a9xa3 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY----RVINV-NSNPATI----------MTDP----EMA 61 (127)
T ss_dssp CCCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC----EEEEE-CSCTTCG----------GGCG----GGS
T ss_pred CCCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC----eEEEe-cCchHhh----------hcCh----hhc
Confidence 57777889999999985 56777889999999 99999 9888653 2332 245
Q ss_pred CEEE-EeeCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 73 DVVV-FSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 73 Divi-l~v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|-++ -++..+.+.++++.= +|+.++..+
T Consensus 62 D~lYfePlt~e~v~~Ii~~E----~pd~il~~~ 90 (127)
T d1a9xa3 62 DATYIEPIHWEVVRKIIEKE----RPDAVLPTM 90 (127)
T ss_dssp SEEECSCCCHHHHHHHHHHH----CCSEEECSS
T ss_pred ceeeeecCCHHHHHHHHHHh----CcCCeEEEe
Confidence 6554 466777777777652 466565544
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=90.31 E-value=0.31 Score=36.29 Aligned_cols=89 Identities=11% Similarity=0.095 Sum_probs=56.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cCc--e-eecCchhhh---ccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGV--K-VLSDNNAVV---EYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g~--~-~~~~~~~~~---~~aDivil~ 78 (272)
...||-=||||.=. ++..|.+.|. +|++. |.+++.++.+++ .+. . +..+..+.- ...|+|+..
T Consensus 37 ~~~~ILDiGcG~G~--~~~~la~~~~----~v~gi-D~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~ 109 (226)
T d1ve3a1 37 KRGKVLDLACGVGG--FSFLLEDYGF----EVVGV-DISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFI 109 (226)
T ss_dssp SCCEEEEETCTTSH--HHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CCCEEEEECCCcch--hhhhHhhhhc----ccccc-cccccchhhhhhhhccccccccccccccccccccCcCceEEEEe
Confidence 34589999998733 4456677788 99999 999887755544 232 2 223333221 346777654
Q ss_pred e-----CcccHHHHHHHhchhcCCCCE-EEEE
Q 024121 79 V-----KPQVVKDVAMQIRPLLSRKKL-LVSV 104 (272)
Q Consensus 79 v-----~~~~~~~v~~~l~~~l~~~~~-iis~ 104 (272)
- ++.+...++.++...++||.. +++.
T Consensus 110 ~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~ 141 (226)
T d1ve3a1 110 DSIVHFEPLELNQVFKEVRRVLKPSGKFIMYF 141 (226)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhhCChhHHHHHHHHHHHHcCcCcEEEEEE
Confidence 2 334566788888888888765 4554
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.30 E-value=0.12 Score=41.70 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=27.8
Q ss_pred CeEE-EE-cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 11 FILG-FI-GAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 11 ~~Ig-iI-G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
+||+ |. |+|-+|+.++..|++.|| +|++. +|.+
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~----~V~~i-~r~~ 35 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGY----EVHGI-VRRS 35 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcC----EEEEE-ECCC
Confidence 5785 55 559999999999999999 99998 7753
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=90.12 E-value=0.16 Score=38.84 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=30.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (272)
..|.|||.|.-|...|..|.+.|+ +|.++ ++++.
T Consensus 3 yDViIIGaG~aGl~aA~~la~~G~----~V~li-Ek~~~ 36 (251)
T d2i0za1 3 YDVIVIGGGPSGLMAAIGAAEEGA----NVLLL-DKGNK 36 (251)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC----cEEEE-eCCCC
Confidence 358999999999999999999999 99999 88653
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.00 E-value=0.69 Score=33.62 Aligned_cols=87 Identities=15% Similarity=0.175 Sum_probs=58.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC----ceee-cCchhh---hccCCEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG----VKVL-SDNNAV---VEYSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g----~~~~-~~~~~~---~~~aDivi 76 (272)
...+|.=||||.=..++. +++.+. +|+.+ +.+++.++.+++ .| +++. .+..+. ....|.||
T Consensus 33 ~g~~VLDiGcGsG~~s~~--lA~~~~----~V~av-D~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~ 105 (186)
T d1l3ia_ 33 KNDVAVDVGCGTGGVTLE--LAGRVR----RVYAI-DRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAV 105 (186)
T ss_dssp TTCEEEEESCTTSHHHHH--HHTTSS----EEEEE-ESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEE
T ss_pred CCCEEEEEECCeEccccc--ccccce----EEEEe-cCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEE
Confidence 456788888876544443 344454 89999 999987766554 33 3332 333332 35789998
Q ss_pred EeeCcccHHHHHHHhchhcCCCCEEE
Q 024121 77 FSVKPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 77 l~v~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
+.-+.....++++.+...++|+..++
T Consensus 106 ~~~~~~~~~~~~~~~~~~LkpgG~lv 131 (186)
T d1l3ia_ 106 VGGSGGELQEILRIIKDKLKPGGRII 131 (186)
T ss_dssp ESCCTTCHHHHHHHHHHTEEEEEEEE
T ss_pred EeCccccchHHHHHHHHHhCcCCEEE
Confidence 87777778888888888888877654
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.87 E-value=0.031 Score=41.00 Aligned_cols=89 Identities=16% Similarity=0.075 Sum_probs=56.0
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-HHHHH-----cCce-e----ecCchhhhccCCE
Q 024121 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRR-DAFES-----IGVK-V----LSDNNAVVEYSDV 74 (272)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~-~~l~~-----~g~~-~----~~~~~~~~~~aDi 74 (272)
....+++.|||-++ .|.+|+.-|.+.|. .|+.+ +.+.... ..-.. .+.. . .+...+...++|+
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga----TVt~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDI 100 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDGA----TVYSV-DVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDV 100 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSC----EEEEE-CSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSE
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCCC----EEEEe-ccccccccccccceeeeeeccccccccchhHHhhccccCCE
Confidence 45678999999876 59999999999998 89888 6543210 00000 0000 0 0113455668999
Q ss_pred EEEeeCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 75 vil~v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
||.+++...+. +. ..++++|.++||.
T Consensus 101 vIsavG~p~~~--i~--~d~ik~GavvIDv 126 (171)
T d1edza1 101 VITGVPSENYK--FP--TEYIKEGAVCINF 126 (171)
T ss_dssp EEECCCCTTCC--BC--TTTSCTTEEEEEC
T ss_pred EEEccCCCccc--cC--hhhcccCceEeec
Confidence 99999654320 00 1346789999986
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.76 E-value=0.36 Score=37.03 Aligned_cols=80 Identities=10% Similarity=0.162 Sum_probs=51.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHH---hCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Ccc
Q 024121 10 SFILGFIGA-GKMAESIAKGVA---KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~---~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~ 82 (272)
|++|-|.|+ .-+|.++++.|+ +.|+ .|++. .|++++++.+++. .-...++.++.+ .++
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~----~V~~~-~r~~~~~~~~~~~----------~~~~~~~~~~~~Dvs~~~ 66 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQ----HLFTT-CRNREQAKELEDL----------AKNHSNIHILEIDLRNFD 66 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCS----EEEEE-ESCTTSCHHHHHH----------HHHCTTEEEEECCTTCGG
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHH----------HhcCCcEEEEEEEeccHH
Confidence 456877776 789999999997 4677 99999 9998877665321 011345555555 345
Q ss_pred cHHHHHHHhchhc--CCCCEEEEE
Q 024121 83 VVKDVAMQIRPLL--SRKKLLVSV 104 (272)
Q Consensus 83 ~~~~v~~~l~~~l--~~~~~iis~ 104 (272)
.++++++++.... .+=.++|+.
T Consensus 67 ~v~~~~~~i~~~~~~~~iDiLvnN 90 (248)
T d1snya_ 67 AYDKLVADIEGVTKDQGLNVLFNN 90 (248)
T ss_dssp GHHHHHHHHHHHHGGGCCSEEEEC
T ss_pred HHHHHHhhhHHHhhcCCcceEEee
Confidence 6778877664321 222366654
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=89.76 E-value=0.35 Score=35.12 Aligned_cols=45 Identities=9% Similarity=0.158 Sum_probs=30.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFES 56 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~~ 56 (272)
|||||=|.|++|..+.+.+.+... +.-+|...++.. .+....|.+
T Consensus 1 ikIgINGfGRIGR~v~R~~~~~~~-~~i~ivaINd~~~~~~~ayLlk 46 (172)
T d1rm4a1 1 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVINDTGGVKQASHLLK 46 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSS-CSEEEEEEECTTCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEEcCCCCHHHHHHHHh
Confidence 699999999999999998886542 222566554543 344455555
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.55 E-value=0.14 Score=40.81 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=27.5
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
|.|||+|.-|.+-|..|.++|+ +|+++ +++
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~----~V~Vl-E~~ 31 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGL----NVVVL-EAR 31 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTC----CEEEE-ESS
T ss_pred EEEECCCHHHHHHHHHHHhCCC----CEEEE-ecC
Confidence 7899999999999999999999 99999 543
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=89.48 E-value=0.24 Score=39.40 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=26.1
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024121 12 ILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (272)
Q Consensus 12 ~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r 46 (272)
||-|.| +|-+|+.+++.|++.|+ +|+++ ++
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~----~V~~i-d~ 32 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGI----DLIVF-DN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC----EEEEE-EC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcC----EEEEE-EC
Confidence 687775 59999999999999999 99987 63
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.37 E-value=0.21 Score=38.51 Aligned_cols=81 Identities=14% Similarity=0.189 Sum_probs=50.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.++|-|.|+ +-||.++++.|++.|+ ...|... .|+.++++++++. ....+.++.+ ..+.+
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~--~~~Vi~~-~R~~~~~~~l~~~------------~~~~~~~~~~Dvs~~~~v 66 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKN--IRHIIAT-ARDVEKATELKSI------------KDSRVHVLPLTVTCDKSL 66 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTT--CCEEEEE-ESSGGGCHHHHTC------------CCTTEEEEECCTTCHHHH
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCC--CCEEEEE-eCCHHHHHHHHHh------------hCCceEEEEEecCCHHHH
Confidence 4466766665 8999999999999985 0157777 8999888776541 1123444443 23456
Q ss_pred HHHHHHhchhcCC--CCEEEEE
Q 024121 85 KDVAMQIRPLLSR--KKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~--~~~iis~ 104 (272)
+++++++...+.. =.++|+.
T Consensus 67 ~~~~~~i~~~~~~~~idilinn 88 (250)
T d1yo6a1 67 DTFVSKVGEIVGSDGLSLLINN 88 (250)
T ss_dssp HHHHHHHHHHHGGGCCCEEEEC
T ss_pred HHHHHHHHHHhCCCCeEEEEEc
Confidence 6777666543322 2356654
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.37 E-value=0.25 Score=39.70 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=28.7
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS 46 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r 46 (272)
++.++|-|.|. |-+|+.++..|.+.|+ +|.+. +|
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~----~V~~~-d~ 48 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQ----KVVGL-DN 48 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-EC
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC----EEEEE-EC
Confidence 34567888855 9999999999999999 99988 65
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.33 E-value=0.37 Score=38.12 Aligned_cols=100 Identities=16% Similarity=0.265 Sum_probs=60.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhC----CCCC----CCcEEEEeCCC----HHH---HHHHHH----cCc-eeecCch
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKS----GVLP----PDRICTAVHSN----LKR---RDAFES----IGV-KVLSDNN 66 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~----g~~~----~~~V~v~~~r~----~~~---~~~l~~----~g~-~~~~~~~ 66 (272)
.....||.|.|+|.-|..+++.+... |. . ..+|+++ |+. .++ .+..++ ... ....++.
T Consensus 22 ~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~-~~~~a~~~i~lv-D~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~ 99 (294)
T d1pj3a1 22 PISEHKILFLGAGEAALGIANLIVMSMVENGL-SEQEAQKKIWMF-DKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFE 99 (294)
T ss_dssp CGGGCCEEEECCSHHHHHHHHHHHHHHHHTTC-CHHHHHHTEEEE-ETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHH
T ss_pred CHHHcEEEEECccHHHHHHHHHHHHHHHhcCC-chhhccccEEEE-eCCCCccCCCCcccHHHHHHhhccccccchhHHH
Confidence 34557899999999999999887654 32 1 1257777 652 111 111111 111 1124567
Q ss_pred hhhc--cCCEEEEee-Cccc-HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 67 AVVE--YSDVVVFSV-KPQV-VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 67 ~~~~--~aDivil~v-~~~~-~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
++++ +.|++|-+. ++.. -+++++.+... .+..+|.-++++.+
T Consensus 100 e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~-~~~PIIFaLSNPt~ 145 (294)
T d1pj3a1 100 DAVNILKPSTIIGVAGAGRLFTPDVIRAMASI-NERPVIFALSNPTA 145 (294)
T ss_dssp HHHHHHCCSEEEECCCSSCCSCHHHHHHHHHH-CSSCEEEECCSSGG
T ss_pred HHHHhcCCceEEEecCCCCcCCHHHHHHHHhc-CCCcEEEEccCCCC
Confidence 7765 788887776 4433 47888776654 46778888888754
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.27 E-value=0.2 Score=40.38 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=27.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS 46 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r 46 (272)
+||-|.|. |-+|+.+++.|++.|+ +|++. ++
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~----~V~~l-d~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGY----LPVVI-DN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC----CEEEE-EC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcC----EEEEE-EC
Confidence 68988865 9999999999999999 99887 53
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.22 E-value=1.1 Score=31.83 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=46.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCC-----HHHHHHHHH----c--CceeecCchhhhccCCEEE
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFES----I--GVKVLSDNNAVVEYSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~-----~~~~~~l~~----~--g~~~~~~~~~~~~~aDivi 76 (272)
+..||+|+|- -++..+++..+.+-|. +++++ ... ++-.+.+.+ . .+..+.+..++++++|+|.
T Consensus 3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~----~v~~~-~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy 77 (163)
T d1pvva2 3 KGVKVVYVGDGNNVAHSLMIAGTKLGA----DVVVA-TPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIY 77 (163)
T ss_dssp TTCEEEEESCCCHHHHHHHHHHHHTTC----EEEEE-CCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCC----eEEEe-cccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEe
Confidence 5789999997 4577888888888888 89888 542 222222222 1 2456788899999999988
Q ss_pred Eee
Q 024121 77 FSV 79 (272)
Q Consensus 77 l~v 79 (272)
.-.
T Consensus 78 ~~~ 80 (163)
T d1pvva2 78 TDV 80 (163)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=88.93 E-value=0.4 Score=34.66 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=33.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES 56 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~l~~ 56 (272)
.||||=|.|++|..+.+.+.+.+. +|...++. +.+.+..|.+
T Consensus 1 ~kIgINGfGRIGR~~~R~~~~~~~----~ivaINd~~~~~~~~~yLlk 44 (169)
T d1dssg1 1 SKIGINGFGRIGRLVLRAALEMGA----QVVAVNDPFIALEYMVYMFK 44 (169)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTC----CEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC----cEEEECCCCcCHHHHHHHHh
Confidence 379999999999999999999887 77776453 4567777766
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=88.91 E-value=0.18 Score=40.46 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=28.7
Q ss_pred CeEEEEcccHHHHHHHHHHH-----hCCCCCCCcEEEEeCCCH
Q 024121 11 FILGFIGAGKMAESIAKGVA-----KSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~-----~~g~~~~~~V~v~~~r~~ 48 (272)
.-|.|||.|..|.++|..|. +.|+ +|+++ +|.+
T Consensus 8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~----~v~vl-Er~~ 45 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKPDL----KVRII-DKRS 45 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTC----CEEEE-CSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCC----cEEEE-cCCC
Confidence 46899999999999999995 5799 99999 8754
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=88.84 E-value=0.41 Score=35.34 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=33.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCC-CCcEEEEeCC--CHHHHHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLP-PDRICTAVHS--NLKRRDAFES 56 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~-~~~V~v~~~r--~~~~~~~l~~ 56 (272)
.|||||=|.|++|..+.+.+.+.+... ..+|...++. +.+.+..|.+
T Consensus 2 ~ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlk 51 (190)
T d1k3ta1 2 PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMR 51 (190)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHH
T ss_pred CeEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhh
Confidence 479999999999999999988765421 1244444344 5677777776
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=88.59 E-value=0.47 Score=35.60 Aligned_cols=88 Identities=16% Similarity=0.207 Sum_probs=55.2
Q ss_pred CCeEEEEcc--cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC----cee-ecCchhh-hccCCEEEE
Q 024121 10 SFILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG----VKV-LSDNNAV-VEYSDVVVF 77 (272)
Q Consensus 10 ~~~IgiIG~--G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g----~~~-~~~~~~~-~~~aDivil 77 (272)
..+|.=||| |.+...+++.+...+. +|++. |.+++-++.+.+ .+ +.. ..+..+. ..+.|+|+.
T Consensus 40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~----~v~gi-D~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~ 114 (225)
T d1im8a_ 40 DSNVYDLGCSRGAATLSARRNINQPNV----KIIGI-DNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVIL 114 (225)
T ss_dssp TCEEEEESCTTCHHHHHHHHTCCCSSC----EEEEE-CSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEE
T ss_pred CCEEEEeccchhhHHHHHHHhhcCCCC----ceEEe-CCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEE
Confidence 457889999 5555555654444566 99999 999976655543 22 111 1222221 235676655
Q ss_pred ee-----CcccHHHHHHHhchhcCCCCEEE
Q 024121 78 SV-----KPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 78 ~v-----~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
.. ++++...++.++...|+||..++
T Consensus 115 ~~~l~~~~~~d~~~~l~~i~~~LkpgG~li 144 (225)
T d1im8a_ 115 NFTLQFLPPEDRIALLTKIYEGLNPNGVLV 144 (225)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccccChhhHHHHHHHHHHhCCCCceee
Confidence 42 45677788999988898888666
|
| >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.53 E-value=0.47 Score=35.20 Aligned_cols=76 Identities=14% Similarity=0.266 Sum_probs=48.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~ 84 (272)
.++.||||||-+ |+.-+ +.+.|.+.|+ ++.+. + ++ .+ +.++|.||++=-. ...
T Consensus 3 ~~~~mkIgii~~~Gn~~s-~~~al~~~G~----~~~~v-~-~~-----------------~~-l~~~D~lIlPGG~~~~~ 57 (202)
T d1q7ra_ 3 FQSNMKIGVLGLQGAVRE-HVRAIEACGA----EAVIV-K-KS-----------------EQ-LEGLDGLVLPGGESTTM 57 (202)
T ss_dssp CCCCCEEEEESCGGGCHH-HHHHHHHTTC----EEEEE-C-SG-----------------GG-GTTCSEEEECCCCHHHH
T ss_pred cccCCEEEEEECCCCHHH-HHHHHHHCCC----cEEEE-C-CH-----------------HH-HhcCCEEEECCCCcHHH
Confidence 357899999988 99844 6788999998 77766 3 22 22 4678888886422 111
Q ss_pred HHH------HHHhchhcCCCCEEEEEcCC
Q 024121 85 KDV------AMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 85 ~~v------~~~l~~~l~~~~~iis~~~~ 107 (272)
... .+.|..+.+.++.++=.|-|
T Consensus 58 ~~~l~~~~l~~~I~~~~~~gkPiLGIClG 86 (202)
T d1q7ra_ 58 RRLIDRYGLMEPLKQFAAAGKPMFGTCAG 86 (202)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCEEEETTH
T ss_pred HHHhhhhHHHHHHhhhccccceeeeeehh
Confidence 111 22344555667777766655
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=88.50 E-value=1.5 Score=30.93 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=45.8
Q ss_pred CCCeEEEEcc---cHHHHHHHHHHHhCCCCCCCcEEEEeCCC-----HHHHHHHHHcC--ceeecCchhhhccCCEEEEe
Q 024121 9 ESFILGFIGA---GKMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFESIG--VKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~---G~mG~~la~~l~~~g~~~~~~V~v~~~r~-----~~~~~~l~~~g--~~~~~~~~~~~~~aDivil~ 78 (272)
+..||+|||= ++...++...+.+-|. ..+.++ ... +...+.+...| +..+.++.++++++|+|...
T Consensus 3 ~gl~i~~vGD~~nsrv~~Sli~~l~~~~~---~~~~~~-~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~ 78 (160)
T d1ekxa2 3 DNLHVAMVGDLKYGRTVHSLTQALAKFDG---NRFYFI-APDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMT 78 (160)
T ss_dssp SSCEEEEESCTTTCHHHHHHHHHHTTSSS---CEEEEE-CCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEEC
T ss_pred CCCEEEEEcCCCccHHHHHHHHHHHHcCC---CeEEee-ccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEee
Confidence 5679999996 6699999998888764 145565 432 22233334444 45678889999999998754
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=88.40 E-value=0.22 Score=35.43 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=26.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
||.|||.|..|.-+|..|.+ +. +|+++ ++.
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~----~Vtvv-~~~ 31 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TY----EVTVI-DKE 31 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TS----EEEEE-CSS
T ss_pred eEEEECCcHHHHHHHHHHHc-CC----CEEEE-ecc
Confidence 89999999999999998865 66 89998 764
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=88.07 E-value=0.62 Score=33.74 Aligned_cols=87 Identities=10% Similarity=0.108 Sum_probs=57.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ec----Cch-hhh-----ccCCEEE
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LS----DNN-AVV-----EYSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~----~~~-~~~-----~~aDivi 76 (272)
...+|-|.|+ |.+|.+.++-....|. +|+.. .+++++.+.+++.|... .. +.. ++. ...|+||
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga----~vi~~-~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~ 103 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGC----KVVGA-AGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYF 103 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCC----EEEEe-CCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeE
Confidence 4567888877 7799988887778888 99998 89999988888877532 11 111 111 2478888
Q ss_pred EeeCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 77 l~v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
=|+..+...+. .+.++++..++.+
T Consensus 104 D~vG~~~~~~~----~~~l~~~G~~v~~ 127 (182)
T d1v3va2 104 DNVGGEFLNTV----LSQMKDFGKIAIC 127 (182)
T ss_dssp ESSCHHHHHHH----GGGEEEEEEEEEC
T ss_pred EecCchhhhhh----hhhccCCCeEEee
Confidence 88864444433 3445555566654
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.75 E-value=0.24 Score=40.69 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=27.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeC
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVH 45 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~ 45 (272)
.|||.|.|. |-+|+.+++.|++.|| +|+++ |
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~----~V~~i-D 32 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNY----EVCIV-D 32 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-E
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC----EEEEE-e
Confidence 389999965 9999999999999999 99988 6
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=87.62 E-value=0.26 Score=40.01 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=26.4
Q ss_pred eEE-EEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 12 ILG-FIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 12 ~Ig-iIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
||. |.| +|-+|+.++..|++.|+ +|++. +|..
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~----~V~~~-~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGY----EVHGI-KRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-CC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC----EEEEE-ECCC
Confidence 455 556 79999999999999999 99999 8843
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=87.44 E-value=0.19 Score=38.26 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=28.0
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH
Q 024121 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR 50 (272)
Q Consensus 12 ~IgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~ 50 (272)
|+++| |.+-||.++++.|.+.|+ +|.+. +|+++.
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga----~V~i~-~~~~~~ 37 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGY----RVVVL-DLRREG 37 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC----EEEEE-ESSCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCccc
Confidence 45555 458999999999999999 99999 887653
|
| >d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.41 E-value=0.23 Score=36.99 Aligned_cols=39 Identities=8% Similarity=0.159 Sum_probs=29.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD 52 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~ 52 (272)
+|-+||.|-.|..++.++.+.+. ...+.+.. |-+.+.++
T Consensus 3 ~IkViGvGGaG~n~vn~~~~~~~-~~v~~iai-nTD~~~L~ 41 (198)
T d1rq2a1 3 VIKVVGIGGGGVNAVNRMIEQGL-KGVEFIAI-NTDAQALL 41 (198)
T ss_dssp CEEEEEEHHHHHHHHHHHHHTTC-CSEEEEEE-ESCHHHHH
T ss_pred eEEEEEeCchHHHHHHHHHHcCC-CCceEEEE-cchHHHHh
Confidence 57899999999999999999885 33345555 66655543
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=87.28 E-value=0.21 Score=36.01 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=26.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTA 43 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~ 43 (272)
..+|.|||.|..|.-+|..|.+.|. ++.+.
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~----~v~v~ 32 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGW----EGNIR 32 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTC----CSEEE
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCC----ceEEE
Confidence 4689999999999999999999987 65554
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=87.07 E-value=0.39 Score=34.63 Aligned_cols=85 Identities=11% Similarity=0.099 Sum_probs=58.8
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchh----hh-----ccCCEEEEeeC
Q 024121 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNA----VV-----EYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~----~~-----~~aDivil~v~ 80 (272)
.+|-|-| +|-.|....+-....|. +|+.. .+++++.+.+++.|+...-+..+ .. +..|+||-++-
T Consensus 25 ~~VLV~gaaGgVG~~avQlAk~~Ga----~Viat-~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg 99 (167)
T d1tt7a2 25 GSVLVTGATGGVGGIAVSMLNKRGY----DVVAS-TGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG 99 (167)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHHTC----CEEEE-ESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCC----ceEEE-ecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc
Confidence 3588887 59999988887778898 99988 88889999998887654322221 11 24788888876
Q ss_pred cccHHHHHHHhchhcCCCCEEEEE
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
.+.+.+.++. ++++..++.+
T Consensus 100 g~~~~~~~~~----l~~~G~iv~~ 119 (167)
T d1tt7a2 100 GKQLASLLSK----IQYGGSVAVS 119 (167)
T ss_dssp THHHHHHHTT----EEEEEEEEEC
T ss_pred HHHHHHHHHH----hccCceEEEe
Confidence 6655555544 4455566654
|
| >d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=86.80 E-value=0.96 Score=33.36 Aligned_cols=87 Identities=15% Similarity=0.238 Sum_probs=55.4
Q ss_pred HHHHHHhCCCCCCCcEEEEeCC-CHH---HHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCE
Q 024121 25 IAKGVAKSGVLPPDRICTAVHS-NLK---RRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKL 100 (272)
Q Consensus 25 la~~l~~~g~~~~~~V~v~~~r-~~~---~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~ 100 (272)
.++.|.+.|| +|.+= .- ... .=+.+.+.|+.+.++.+++..++|+|+-.-+|..-+. -......++++++
T Consensus 22 ~vkkl~~~G~----~V~vE-~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e~-~~~ei~~lk~g~~ 95 (194)
T d1l7da2 22 VVKKLVGLGF----EVIVE-QGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEE-GTDEVALIKEGAV 95 (194)
T ss_dssp HHHHHHHTTC----EEEEE-TTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGGG-SCCGGGGSCTTCE
T ss_pred HHHHHHHCCC----EEEEE-cCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCccccc-chhHhhhccCceE
Confidence 5678899999 98876 21 110 1145666899998888899999998876655543221 1112234789999
Q ss_pred EEEEcCCCC-HHHHHHHh
Q 024121 101 LVSVAAGVK-LKDLQEWT 117 (272)
Q Consensus 101 iis~~~~~~-~~~l~~~~ 117 (272)
+|+...... .+.++.+.
T Consensus 96 li~~l~p~~~~~~~~~l~ 113 (194)
T d1l7da2 96 LMCHLGALTNRPVVEALT 113 (194)
T ss_dssp EEEECCGGGCHHHHHHHH
T ss_pred EEEecccccchhHHHHHH
Confidence 998876543 34444433
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.61 E-value=0.69 Score=33.55 Aligned_cols=86 Identities=13% Similarity=0.104 Sum_probs=55.7
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCc----hhhh-----ccCCEEEEee
Q 024121 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN----NAVV-----EYSDVVVFSV 79 (272)
Q Consensus 10 ~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~----~~~~-----~~aDivil~v 79 (272)
..+|-|.| .|-+|+...+-....|. +|+.. .+++++.+.+++.|+...-+. .+.. +..|+||=++
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~Ga----~Viat-~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~v 106 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKRGY----TVEAS-TGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPV 106 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHTTC----CEEEE-ESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECS
T ss_pred CCEEEEEeccchHHHHHHHHHHHcCC----ceEEe-cCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcC
Confidence 45788887 59999988888878898 99988 888888888888775432111 1111 2456777776
Q ss_pred CcccHHHHHHHhchhcCCCCEEEEE
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
-...+...+..+ +++..++.+
T Consensus 107 gg~~~~~~l~~l----~~~Griv~~ 127 (176)
T d1xa0a2 107 GGRTLATVLSRM----RYGGAVAVS 127 (176)
T ss_dssp TTTTHHHHHHTE----EEEEEEEEC
T ss_pred CchhHHHHHHHh----CCCceEEEe
Confidence 555555555443 344455543
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=86.46 E-value=0.27 Score=38.87 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=26.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEE
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTA 43 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~ 43 (272)
.+||.|.|. |.+|++++..|.+.|+ .+.+.
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~----~vi~~ 32 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGD----VELVL 32 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT----EEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcC----EEEEe
Confidence 468999965 9999999999999998 77766
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.39 E-value=0.32 Score=38.78 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=26.1
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 12 ILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 12 ~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
++-|.| +|-+|+.++..|++.|| +|++. +|.
T Consensus 3 ~~LVTGatGfiG~~lv~~Ll~~g~----~V~~~-~r~ 34 (339)
T d1n7ha_ 3 IALITGITGQDGSYLTEFLLGKGY----EVHGL-IRR 34 (339)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECC
T ss_pred EEEEeCCccHHHHHHHHHHHHCcC----EEEEE-ECC
Confidence 444555 59999999999999999 99999 774
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.29 E-value=0.38 Score=38.04 Aligned_cols=33 Identities=18% Similarity=0.115 Sum_probs=28.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
+||-|.|. |-+|+.++..|++.|| +|++. +|..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~----~V~~~-~r~~ 34 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGY----RVHGL-VARR 34 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC----EEEEE-ECCC
Confidence 46778865 9999999999999999 99988 7754
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.94 E-value=0.61 Score=29.81 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=29.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
|||.+||.|.=-.+|+..|.++.+ +++++ .-|+
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~----~v~~~-pGN~ 33 (90)
T d1vkza2 1 VRVHILGSGGREHAIGWAFAKQGY----EVHFY-PGNA 33 (90)
T ss_dssp CEEEEEECSHHHHHHHHHHHHTTC----EEEEE-ECCT
T ss_pred CEEEEECCCHHHHHHHHHHhcCCC----eEEEe-cCCc
Confidence 899999999999999999999877 88888 5554
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=85.84 E-value=0.98 Score=33.83 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=57.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc--eeecCchhh---hccCCEEEEeeC---
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAV---VEYSDVVVFSVK--- 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~--~~~~~~~~~---~~~aDivil~v~--- 80 (272)
+..||-=||||. |. ++..|.+.|+ +|++. |.+++.++.+++.+. .+..+..++ -...|+|+..-.
T Consensus 42 ~~~~vLDiGcG~-G~-~~~~l~~~~~----~v~gi-D~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~ 114 (246)
T d2avna1 42 NPCRVLDLGGGT-GK-WSLFLQERGF----EVVLV-DPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLS 114 (246)
T ss_dssp SCCEEEEETCTT-CH-HHHHHHTTTC----EEEEE-ESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHH
T ss_pred CCCEEEEECCCC-ch-hcccccccce----EEEEe-ecccccccccccccccccccccccccccccccccceeeecchhh
Confidence 346888899983 22 4556778888 99999 999988877776432 223333332 134688775421
Q ss_pred -cccHHHHHHHhchhcCCCCEEE-EE
Q 024121 81 -PQVVKDVAMQIRPLLSRKKLLV-SV 104 (272)
Q Consensus 81 -~~~~~~v~~~l~~~l~~~~~ii-s~ 104 (272)
-.....++.++...++||.+++ ++
T Consensus 115 ~~~d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 115 YVENKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp HCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence 1244567788878888877655 44
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.81 E-value=0.82 Score=35.52 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=55.9
Q ss_pred CCeEEEEcc--cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----c------Ccee-ecCchhh---hccCC
Q 024121 10 SFILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----I------GVKV-LSDNNAV---VEYSD 73 (272)
Q Consensus 10 ~~~IgiIG~--G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~------g~~~-~~~~~~~---~~~aD 73 (272)
.++|.=+|| |.+...+++.+...| +|+.+ +.+++.++.+++ . ++.. ..|..+. -...|
T Consensus 97 G~~VLE~G~GsG~lt~~La~~vgp~G-----~V~~~-d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD 170 (264)
T d1i9ga_ 97 GARVLEAGAGSGALTLSLLRAVGPAG-----QVISY-EQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVD 170 (264)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTS-----EEEEE-CSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEE
T ss_pred CCEEEecCcCCcHHHHHHHHhhCCCc-----EEEEe-cCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcc
Confidence 467777766 777778888776666 79999 999988766544 1 1221 2222221 13579
Q ss_pred EEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 74 VVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 74 ivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
.||+-+|+.. ++++.+...|+|+..++..+..+
T Consensus 171 aV~ldlp~P~--~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 171 RAVLDMLAPW--EVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp EEEEESSCGG--GGHHHHHHHEEEEEEEEEEESSH
T ss_pred eEEEecCCHH--HHHHHHHhccCCCCEEEEEeCcc
Confidence 9999886431 22334444567777777655433
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=85.44 E-value=1.8 Score=32.58 Aligned_cols=89 Identities=13% Similarity=0.072 Sum_probs=58.8
Q ss_pred CCCeEEEEcc--cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cCc----ee-ecCchhhh--------
Q 024121 9 ESFILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGV----KV-LSDNNAVV-------- 69 (272)
Q Consensus 9 ~~~~IgiIG~--G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g~----~~-~~~~~~~~-------- 69 (272)
+.++|-=||+ |--...|+.++-+.| +|+.+ +.+++..+...+ .|. .+ ..+..+.+
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g-----~v~ti-e~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~ 132 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDG-----KILAM-DINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEK 132 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTC-----EEEEE-ESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGG
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCc-----EEEEE-eccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccc
Confidence 3467888887 666666777765555 78888 898877655443 343 22 12222222
Q ss_pred --ccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEE
Q 024121 70 --EYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 70 --~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis 103 (272)
...|+||+=-........++.+.+.+++|.++|-
T Consensus 133 ~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~ 168 (227)
T d1susa1 133 NHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGY 168 (227)
T ss_dssp GTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEE
T ss_pred cCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEE
Confidence 2489999976555667777777888899988774
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=85.38 E-value=0.58 Score=31.31 Aligned_cols=36 Identities=8% Similarity=-0.017 Sum_probs=26.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
..+|.|||.|.+|.-+|..|.+.|. +..+|+++ .|.
T Consensus 20 p~~v~ivGgG~ig~E~A~~l~~l~~-~~~~Vtli-~~~ 55 (117)
T d1aoga2 20 PRRVLTVGGGFISVEFAGIFNAYKP-KDGQVTLC-YRG 55 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCC-TTCEEEEE-ESS
T ss_pred CCeEEEECCcHHHHHHHHHhhhccc-CCcEEEEE-ecc
Confidence 3689999999999999966654432 12279888 654
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=85.36 E-value=0.81 Score=36.62 Aligned_cols=35 Identities=29% Similarity=0.211 Sum_probs=28.6
Q ss_pred CeEEEE-ccc---HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH
Q 024121 11 FILGFI-GAG---KMAESIAKGVAKSGVLPPDRICTAVHSNLKR 50 (272)
Q Consensus 11 ~~IgiI-G~G---~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~ 50 (272)
-||++| |.| -||.++|+.|.+.|. +|.+. .++...
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA----~V~i~-~~~~~~ 40 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNV----KIIFG-IWPPVY 40 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTC----EEEEE-ECGGGH
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCC----EEEEE-eCchhh
Confidence 367777 866 599999999999999 99988 776543
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=85.29 E-value=0.29 Score=37.25 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=29.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (272)
.||-|.|. |-||.++++.|.++|+ +|.+. +|+++
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~----~V~~~-~~~~~ 37 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGY----TVLNI-DLSAN 37 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTE----EEEEE-ESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCch
Confidence 47877765 9999999999999999 99999 88764
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=85.07 E-value=0.8 Score=34.72 Aligned_cols=88 Identities=8% Similarity=0.066 Sum_probs=56.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC--cee-ecCchhh--hccCCEEEEe--
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG--VKV-LSDNNAV--VEYSDVVVFS-- 78 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g--~~~-~~~~~~~--~~~aDivil~-- 78 (272)
..+|.=||||. | .+...|.+.|. +|+.+ |.+++-++.+++ .| ++. ..|..+. -+..|+|+..
T Consensus 38 ~~~vLDiGCG~-G-~~~~~l~~~g~----~v~Gv-D~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~ 110 (246)
T d1y8ca_ 38 FDDYLDLACGT-G-NLTENLCPKFK----NTWAV-DLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLD 110 (246)
T ss_dssp TTEEEEETCTT-S-TTHHHHGGGSS----EEEEE-CSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTT
T ss_pred CCeEEEEeCcC-C-HHHHHHHHhCC----ccEee-ccchhhhhhccccccccCccceeeccchhhhcccccccccceeee
Confidence 46899999974 2 25556778888 99999 999876655433 33 332 2333322 2356988853
Q ss_pred ----e-CcccHHHHHHHhchhcCCCCEEE-EE
Q 024121 79 ----V-KPQVVKDVAMQIRPLLSRKKLLV-SV 104 (272)
Q Consensus 79 ----v-~~~~~~~v~~~l~~~l~~~~~ii-s~ 104 (272)
+ .+++...++..+..+|+||..+| ++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 111 STNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp GGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred eeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 1 23456678888888888876554 54
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=84.95 E-value=0.89 Score=30.72 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=53.1
Q ss_pred CCCCeEEEEcccH-----------HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEE-
Q 024121 8 AESFILGFIGAGK-----------MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVV- 75 (272)
Q Consensus 8 ~~~~~IgiIG~G~-----------mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiv- 75 (272)
.+.+||-|||.|. .+...++.|.+.|+ ++.+. |.||+.. ..|. .-+|-+
T Consensus 2 t~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~----~~Ili-N~NPeTV----------std~----d~aD~lY 62 (121)
T d1a9xa4 2 TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY----ETIMV-NCNPETV----------STDY----DTSDRLY 62 (121)
T ss_dssp SSSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC----EEEEE-CCCTTSS----------TTST----TSSSEEE
T ss_pred CCCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC----eEEEE-ecChhhh----------hcCh----hhcCceE
Confidence 3568999999984 56778899999999 99999 9998653 2332 245644
Q ss_pred EEeeCcccHHHHHHHhchhcCCCCEEEEEcCC
Q 024121 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
|-.+..+.+.++++.= +|+.+++.+ +|
T Consensus 63 feplt~e~v~~Ii~~E----~p~~ii~~~-GG 89 (121)
T d1a9xa4 63 FEPVTLEDVLEIVRIE----KPKGVIVQY-GG 89 (121)
T ss_dssp CCCCSHHHHHHHHHHH----CCSEEECSS-ST
T ss_pred EccCCHHHHHHHHHHh----CCCEEEeeh-hh
Confidence 4467777777777543 466666654 44
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=84.91 E-value=0.23 Score=38.64 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=26.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
|||-|.|. |-+|+++.+.|.+.|+ .|.+. .++
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~----~v~~~-~~~ 33 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN----LIALD-VHS 33 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE----EEEEC-TTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC----EEEEE-CCC
Confidence 78999985 9999999999999886 55555 443
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.71 E-value=4.5 Score=31.59 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=27.0
Q ss_pred eEEEE-cc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024121 12 ILGFI-GA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (272)
Q Consensus 12 ~IgiI-G~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (272)
|+.+| |. +-||.++++.|++.|+ +|.+. +|+.+
T Consensus 8 KvalITGas~GIG~aiA~~la~~Ga----~Vvi~-d~~~~ 42 (302)
T d1gz6a_ 8 RVVLVTGAGGGLGRAYALAFAERGA----LVVVN-DLGGD 42 (302)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-CCCBC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-eCCch
Confidence 45555 55 7899999999999999 99998 87643
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.68 E-value=0.45 Score=36.21 Aligned_cols=34 Identities=6% Similarity=0.039 Sum_probs=29.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
.++|-|.|. |-+|.++++.|.+.|+ +|.+. ++++
T Consensus 2 gK~vlITGas~GIG~a~a~~l~~~G~----~V~~~-~~~~ 36 (236)
T d1dhra_ 2 ARRVLVYGGRGALGSRCVQAFRARNW----WVASI-DVVE 36 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTC----EEEEE-ESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-eCCc
Confidence 577888877 8899999999999999 99988 7764
|
| >d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Probab=84.66 E-value=0.92 Score=35.80 Aligned_cols=100 Identities=14% Similarity=0.176 Sum_probs=56.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhC----CCCCC----CcEEEEeCCCH------HHHHHHHH---cCceeecCchhhh
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKS----GVLPP----DRICTAVHSNL------KRRDAFES---IGVKVLSDNNAVV 69 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~----g~~~~----~~V~v~~~r~~------~~~~~l~~---~g~~~~~~~~~~~ 69 (272)
.....||.|.|+|.-|..++..+... |. +. .+|+++ |+.- +.....++ ....-..+..+++
T Consensus 22 ~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~-~~~~a~~~i~l~-D~kGlv~~~R~~l~~~k~~~a~~~~~~~~l~~~i 99 (298)
T d1gq2a1 22 RLSDHTVLFQGAGEAALGIANLIVMAMQKEGV-SKEEAIKRIWMV-DSKGLIVKGRASLTPEKEHFAHEHCEMKNLEDIV 99 (298)
T ss_dssp CGGGCCEEEECCSHHHHHHHHHHHHHHHHHTC-CHHHHHTTEEEE-ETTEECBTTCSSCCTTGGGGCBSCCCCCCHHHHH
T ss_pred CHHHcEEEEECccHHHHHHHHHHHHHHHHcCC-ChhhccceEEEE-eCCCcccCCCcccCHHHHHHHHHhhhhhhhHHHh
Confidence 44567899999999999998888643 32 11 267777 6521 11111111 0111112344554
Q ss_pred c--cCCEEEEee-Ccc-cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 70 E--YSDVVVFSV-KPQ-VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 70 ~--~aDivil~v-~~~-~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
+ +.+++|-+. .+. .-+++++.+..+ .+..+|.-++++.+
T Consensus 100 ~~vkptvliG~s~~~g~ft~evv~~ma~~-~~~PIIFaLSNPt~ 142 (298)
T d1gq2a1 100 KDIKPTVLIGVAAIGGAFTQQILQDMAAF-NKRPIIFALSNPTS 142 (298)
T ss_dssp HHHCCSEEEECSCCTTCSCHHHHHHHHHH-CSSCEEEECCSSGG
T ss_pred hccChheeEecccccCcCCHHHHHHHHhh-CCCCEEEEccCCCC
Confidence 4 355666554 233 457777766654 46678888877654
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=84.35 E-value=0.45 Score=35.30 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=28.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
-+.|||.|.-|...|..+.+.|. +|.++ +++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~----kV~ii-E~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQ----KCALI-EAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTC----CEEEE-ESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC----EEEEE-ecc
Confidence 47899999999999999999998 99999 765
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=84.32 E-value=1.3 Score=31.81 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=31.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES 56 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~ 56 (272)
||||=|.|++|..+.+.+++... +.-+|...++. +.+.+..|.+
T Consensus 2 kIgINGfGRIGR~v~R~~~~~~~-~~i~vvaINd~~~~e~~ayLlk 46 (169)
T d1hdgo1 2 RVAINGFGRIGRLVYRIIYERKN-PDIEVVAINDLTDTKTLAHLLK 46 (169)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTC-TTCEEEEEECSSCHHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHhccC-CCEEEEEeccCccHHHHHHHHh
Confidence 89999999999999999886432 12266665454 4556666665
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=84.18 E-value=0.78 Score=30.54 Aligned_cols=34 Identities=15% Similarity=0.011 Sum_probs=26.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHh---CCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGAGKMAESIAKGVAK---SGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~---~g~~~~~~V~v~~~r~~ 48 (272)
.+++.|||.|.+|.-+|..|.+ .|. +|+++ .|.+
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~----~Vtli-~~~~ 54 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGG----QVDLA-YRGD 54 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTC----EEEEE-ESSS
T ss_pred CCeEEEECCChHHHHHHHHhHhhccccc----cccee-cccc
Confidence 3689999999999999876554 366 89888 6643
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=84.12 E-value=1.4 Score=33.21 Aligned_cols=88 Identities=19% Similarity=0.195 Sum_probs=56.9
Q ss_pred CCCeEEEEcc--cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC-ce-eecC---c---hhhhccCCE
Q 024121 9 ESFILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG-VK-VLSD---N---NAVVEYSDV 74 (272)
Q Consensus 9 ~~~~IgiIG~--G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g-~~-~~~~---~---~~~~~~aDi 74 (272)
..++|.=+|| |..-+.++...-..| .|+.+ +.+++.++.+.+ .+ +. +..+ + .......|+
T Consensus 73 pG~~VLDlGaGsG~~t~~la~~VG~~G-----~V~aV-D~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~ 146 (227)
T d1g8aa_ 73 PGKSVLYLGIASGTTASHVSDIVGWEG-----KIFGI-EFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTS-----EEEEE-ESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred CCCEEEEeccCCCHHHHHHHHHhCCCC-----EEEEE-eCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEE
Confidence 4578999987 555666666544555 79999 999988777655 12 22 1111 1 122346678
Q ss_pred EEEeeC-cccHHHHHHHhchhcCCCCEEE
Q 024121 75 VVFSVK-PQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 75 vil~v~-~~~~~~v~~~l~~~l~~~~~ii 102 (272)
|+.-++ +++...++..+...|+++..++
T Consensus 147 i~~d~~~~~~~~~~l~~~~~~LkpgG~lv 175 (227)
T d1g8aa_ 147 IFEDVAQPTQAKILIDNAEVYLKRGGYGM 175 (227)
T ss_dssp EEECCCSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEccccchHHHHHHHHHHhcccCCeEE
Confidence 877765 4566777888777788877654
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=84.01 E-value=1.1 Score=32.10 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=31.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES 56 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~ 56 (272)
.+||||=|.|++|..+.+.+.+... -+|...++. +++....|.+
T Consensus 1 tikigINGFGRIGR~v~R~~~~~~~---i~ivaINd~~~~~~~ayLl~ 45 (166)
T d1gado1 1 TIKVGINGFGRIGRIVFRAAQKRSD---IEIVAINDLLDADYMAYMLK 45 (166)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSS---EEEEEEECSSCHHHHHHHHH
T ss_pred CeEEEEECCcHHHHHHHHHHhhCCC---eEEEEEeCCCCHHHHhhhhe
Confidence 3699999999999999999887642 266666333 3455555555
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.93 E-value=1.2 Score=32.36 Aligned_cols=46 Identities=15% Similarity=0.121 Sum_probs=31.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCce
Q 024121 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK 60 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~ 60 (272)
.+|-|.| +|.+|+..++-....|. ..|... .+++++...+.+ .|..
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga---~~vi~~-~~~~e~~~~l~~~~gad 79 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGC---SRVVGI-CGTQEKCLFLTSELGFD 79 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTC---SEEEEE-ESSHHHHHHHHHHSCCS
T ss_pred CEEEEECCCchhhHHHHHHHHHcCC---cceecc-cchHHHHhhhhhcccce
Confidence 5688887 59999988877766776 135555 667676666654 5543
|
| >d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.90 E-value=1 Score=33.34 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=28.6
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR 51 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~ 51 (272)
+|-|||.|--|..++.+|.+.+. ..-+.... |-+.+.+
T Consensus 3 ~IkViGvGGaG~n~v~~~~~~~~-~~v~~iai-nTD~~~L 40 (198)
T d1ofua1 3 VIKVIGVGGGGGNAVNHMAKNNV-EGVEFICA-NTDAQAL 40 (198)
T ss_dssp CEEEEEEHHHHHHHHHHHHHTTC-CSEEEEEE-ESBTGGG
T ss_pred eEEEEEECchHHHHHHHHHHcCC-CCeEEEEE-eCcHHHH
Confidence 58899999999999999999885 32344555 6655544
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.34 E-value=0.52 Score=34.41 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=29.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
..+|.|||.|.-|..-|..+.+.|. ++.++ ++.
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~----~v~vi-e~~ 37 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAEL----KPLLF-EGW 37 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC----CCEEE-CCS
T ss_pred cceEEEECCCHHHHHHHHHHHHcCC----cEEEE-Eee
Confidence 4689999999999999999999998 88888 754
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=83.17 E-value=0.77 Score=34.08 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=28.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHS 46 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r 46 (272)
+.|||.|+|.+..+..+...|.++|+ +|. |+ .+
T Consensus 2 ~~mKI~f~G~~~~~~~~L~~L~~~~~----~i~~Vi-t~ 35 (206)
T d1fmta2 2 ESLRIIFAGTPDFAARHLDALLSSGH----NVVGVF-TQ 35 (206)
T ss_dssp CCCEEEEEECSHHHHHHHHHHHHTTC----EEEEEE-CC
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCC----CEEEEE-eC
Confidence 57999999999999999999999998 765 44 54
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=82.75 E-value=0.78 Score=33.02 Aligned_cols=41 Identities=10% Similarity=-0.024 Sum_probs=32.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
...||-.||||.=- .+..|++.|+ +|+++ |.+++-++.+++
T Consensus 20 ~~~rvLd~GCG~G~--~a~~la~~G~----~V~gv-D~S~~~i~~a~~ 60 (201)
T d1pjza_ 20 PGARVLVPLCGKSQ--DMSWLSGQGY----HVVGA-ELSEAAVERYFT 60 (201)
T ss_dssp TTCEEEETTTCCSH--HHHHHHHHCC----EEEEE-EECHHHHHHHHH
T ss_pred CCCEEEEecCcCCH--HHHHHHHcCC----ceEee-cccHHHHHHHHH
Confidence 45789999998754 4456778899 99999 999987776665
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.53 E-value=0.68 Score=34.43 Aligned_cols=29 Identities=14% Similarity=0.278 Sum_probs=26.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEE
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTA 43 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~ 43 (272)
|||.|+|.+..|..+...|.++|+ +|...
T Consensus 1 MkI~~~G~~~~~~~~l~~L~~~~~----~i~~V 29 (203)
T d2bw0a2 1 MKIAVIGQSLFGQEVYCHLRKEGH----EVVGV 29 (203)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTC----EEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCC----cEEEE
Confidence 899999999999999999999999 87643
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=82.10 E-value=0.66 Score=36.39 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=30.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
+.--|.|||.|.-|.+.|..+.+.|. +|.+. ++.+
T Consensus 15 e~~DVlVIG~G~aGl~aA~~la~~G~----~V~lv-EK~~ 49 (308)
T d1y0pa2 15 DTVDVVVVGSGGAGFSAAISATDSGA----KVILI-EKEP 49 (308)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC----cEEEE-ecCC
Confidence 34569999999999999999999999 99999 7654
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=81.96 E-value=1.8 Score=31.08 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=32.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES 56 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~l~~ 56 (272)
.||||=|.|++|..+.+.+.+... .+|...++. +.+.+..|.+
T Consensus 2 ikIgINGFGRIGR~v~R~~~~~~~---~~ivaINd~~~~~~~~ayLlk 46 (169)
T d1u8fo1 2 VKVGVNGFGRIGRLVTRAAFNSGK---VDIVAINDPFIDLNYMVYMFQ 46 (169)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCS---SEEEEEECSSSCHHHHHHHHH
T ss_pred cEEEEECCcHHHHHHHHHHHHCCC---cEEEEecCCCccHHHHHHHHh
Confidence 589999999999999998887642 177766464 4566667766
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=81.78 E-value=0.6 Score=37.81 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=22.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCC
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGV 34 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~ 34 (272)
|||-|.|. |-+|+.++..|++.|+
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~ 25 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQ 25 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC
Confidence 78999965 9999999999999998
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=81.25 E-value=0.48 Score=34.18 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=22.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGV 34 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~ 34 (272)
.+|.|||.|..|.-+|..|.+.|+
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~ 27 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGY 27 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTC
T ss_pred CCEEEECccHHHHHHHHHHHhcCC
Confidence 459999999999999999999886
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=81.03 E-value=0.29 Score=38.95 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.8
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCC
Q 024121 11 FILGFIG-AGKMAESIAKGVAKSGV 34 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~g~ 34 (272)
|||-|.| +|-+|+.++..|++.|+
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~ 25 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAY 25 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC
Confidence 7898885 59999999999999997
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=80.94 E-value=0.63 Score=36.09 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=28.3
Q ss_pred eEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCH
Q 024121 12 ILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNL 48 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~ 48 (272)
.|.|||+|.-|...|..|.+ .|+ +|.++ ++.+
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G~----~V~vl-E~~~ 67 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPNV----QVAII-EQSV 67 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTS----CEEEE-ESSS
T ss_pred CEEEECCCHHHHHHHHHHHHccCC----eEEEE-ecCC
Confidence 48999999999999999987 599 99999 7764
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.86 E-value=0.7 Score=37.91 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=29.1
Q ss_pred CeEEEEcccHHHHHHHHHHHh------CCCCCCCcEEEEeCCCH
Q 024121 11 FILGFIGAGKMAESIAKGVAK------SGVLPPDRICTAVHSNL 48 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~------~g~~~~~~V~v~~~r~~ 48 (272)
.-|.|||.|.-|++-|..|.+ .|+ +|.+. +|..
T Consensus 33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl----~Vlll-EK~~ 71 (380)
T d2gmha1 33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDL----RVCLV-EKAA 71 (380)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCC----CEEEE-CSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhhhhhhcCCC----EEEEE-cCCC
Confidence 469999999999999999986 788 99999 8764
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=80.70 E-value=1.7 Score=33.63 Aligned_cols=90 Identities=18% Similarity=0.168 Sum_probs=52.5
Q ss_pred CCCeEEEEccc--HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cCc----ee-ecCchhh--hccCCEE
Q 024121 9 ESFILGFIGAG--KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGV----KV-LSDNNAV--VEYSDVV 75 (272)
Q Consensus 9 ~~~~IgiIG~G--~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g~----~~-~~~~~~~--~~~aDiv 75 (272)
..++|.=+||| .+...+++.+...| +|+.+ +.+++.++.+++ .|. .+ ..+..+. ...+|.|
T Consensus 103 pG~~VLDiG~GsG~lt~~lA~~~~~~G-----~V~~v-D~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V 176 (266)
T d1o54a_ 103 EGDRIIDTGVGSGAMCAVLARAVGSSG-----KVFAY-EKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDAL 176 (266)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTTC-----EEEEE-CCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCCc-----EEEEE-eCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeee
Confidence 45788888875 45555555444444 79999 999987766554 332 11 1222222 2357888
Q ss_pred EEeeCcccHHHHHHHhchhcCCCCEEEEEcC
Q 024121 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
|+-+|+. .++++.+...|+||..++..+.
T Consensus 177 ~~d~p~p--~~~l~~~~~~LKpGG~lv~~~P 205 (266)
T d1o54a_ 177 FLDVPDP--WNYIDKCWEALKGGGRFATVCP 205 (266)
T ss_dssp EECCSCG--GGTHHHHHHHEEEEEEEEEEES
T ss_pred EecCCCH--HHHHHHHHhhcCCCCEEEEEeC
Confidence 8888642 1234444455677777765443
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=80.61 E-value=0.82 Score=33.08 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=29.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
..+|.|||.|..|..-|..+.+.|. +|+++ ++..
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~----~v~ii-e~~~ 38 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANL----QPVLI-TGME 38 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTC----CCEEE-CCSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC----ceEEE-Eeec
Confidence 4579999999999999999999998 99998 7653
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.35 E-value=7.5 Score=29.89 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=57.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHHH----cCc----e-eecCchhhhccCCEEEE
Q 024121 8 AESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFES----IGV----K-VLSDNNAVVEYSDVVVF 77 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~~----~g~----~-~~~~~~~~~~~aDivil 77 (272)
....+|.=||||.=|.+ ..+. +.|. +|+.+ +.+++..+..++ .|+ . ...+..+.-...|.|+.
T Consensus 51 ~~g~~VLDiGCG~G~~a--~~~a~~~g~----~v~gi-~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~s 123 (280)
T d2fk8a1 51 KPGMTLLDIGCGWGTTM--RRAVERFDV----NVIGL-TLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVS 123 (280)
T ss_dssp CTTCEEEEESCTTSHHH--HHHHHHHCC----EEEEE-ESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEE
T ss_pred CCCCEEEEecCCchHHH--HHHHHhCce----eEEEe-cchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhH
Confidence 34679999999876543 3344 3477 99999 999887655443 332 1 22344454456788865
Q ss_pred ee-----CcccHHHHHHHhchhcCCCCEEE
Q 024121 78 SV-----KPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 78 ~v-----~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
.- +......++.++...|+||..++
T Consensus 124 i~~~eh~~~~~~~~~f~~i~~~LkpgG~~~ 153 (280)
T d2fk8a1 124 IEAFEHFGHENYDDFFKRCFNIMPADGRMT 153 (280)
T ss_dssp ESCGGGTCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred hhHHHHhhhhhHHHHHHHHHhccCCCceEE
Confidence 42 33456788888888888877654
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=80.19 E-value=2 Score=30.72 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=32.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHH
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES 56 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~l~~ 56 (272)
||||=|.|++|..+.+.+++... -+|...+++ +.+.+..|.+
T Consensus 2 kigINGfGRIGR~v~R~~~~~~~---~~iv~INd~~~d~~~~ayLlk 45 (166)
T d2b4ro1 2 KLGINGFGRIGRLVFRAAFGRKD---IEVVAINDPFMDLNHLCYLLK 45 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSS---EEEEEEECTTCCHHHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHhhCCC---cEEEEECCCCCChHHhhhhhh
Confidence 89999999999999999987532 167666454 5677777776
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