Citrus Sinensis ID: 024130

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
Protein Sequence
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSVLPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccHHHHHHHHcHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccccccccEEEccccccEEEEEcEEEccHHHHHHHHHcHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccHHHHHEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MDAARKKAIFRAKLNAQkkekrinsplvrynefdqpvcrVCDVvlksdsqwdaHQASRKHHEAIKNikagatgnntrvvsdaakpeagvdssrsesgsasqnaELENsaklgkarppsvlpsnffdnqevkrpktdsvklvdpdstkpsgvsaktQALKSVVLEnemdelpngnavhaekgqpfkehpekskqnAGSEAKQikgalpegffdnkdADLLargikpvkpdvkDEYKEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQK
Flexible Loop (DISEMBL)
mdaarkkaifraklnaqkkekrinsplvrynefdqpvCRVCDVVLKSDSQWDAHQASRKHheaiknikagatgnntrvVSDAAkpeagvdssrsesgsasqNAELENSAKLGKARPPSVLpsnffdnqevkrpktdsvklvdpdstkpsgvsaktqALKSVVLENEMDELPNGNAVHAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLArgikpvkpdvkdEYKEYEKLIQEDLKQVDDRLEEEEIDAAemieeyesvdqk
Low Complexity Region (SEG)
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSVLPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLeeeeidaaemieeyeSVDQK
Disordered region (IsUnstruct)
************************SPLVRYNEFDQPVCRVCDVVLKSDS************************************************************************************************************************************************************************LLAR***************************************************
Disordered Region (DISOPRED)
**************************LVRYNEFDQPVCRVCDVVLKSDSQWDAHQAS******************************************************************************************************************************************************EGFFDNKDADL*********PDVKDEYKEY***********************************
Disordered Region (DISEMBL)
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQ***********EAIKNIKAGATGNNTRVVSDA***************************KLGKARPPSVLPSNFFDNQEVKRPKTDSVKLV*************TQALKSVVLENEMDELPNGNAVHAEKGQ******************QIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQK
Disordered Region (DISPRO)
*******************EKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAG************************************************************************************************************************************KGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESV***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSVLPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	272	2.2.26 [Sep-21-2011]
Q6DJ13	357	Zinc finger protein 830 O	yes	no	0.926	0.705	0.242	6e-09
Q8R1N0	363	Zinc finger protein 830 O	yes	no	0.823	0.617	0.274	1e-08
Q63ZM9	356	Zinc finger protein 830 O	N/A	no	0.801	0.612	0.216	1e-07
Q3MHS2	370	Zinc finger protein 830 O	yes	no	0.834	0.613	0.240	4e-06
Q96NB3	372	Zinc finger protein 830 O	yes	no	0.235	0.172	0.281	0.0003

>sp|Q6DJ13|ZN830_XENTR Zinc finger protein 830 OS=Xenopus tropicalis GN=znf830 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 141/314 (44%), Gaps = 62/314 (19%)

Query: 2   DAARKKAI----FRAKLNAQKK----EKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDA 53
           DA +KK +     R  + A+++    +KRI SPL +YN     +C VC++ +KS+  W A
Sbjct: 3   DAGKKKLVQQEELRRLMKAKQRRSCSKKRIESPLAKYNSLGHLLCVVCNIQIKSELLWPA 62

Query: 54  HQASRKHHEAIKNIKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGK 113
           H   ++H E +  +K    G+   + S + K +      R   GS  +N E     K  +
Sbjct: 63  HILGKQHKEKVAELK----GSKANISSPSNKVQLHHIMKR--KGSEPENQE-SKRIKGTE 115

Query: 114 ARPPSV---LPSNFFDNQEVKRP-----KTDSVKL------------------VDPDST- 146
            +P ++   LP  FF+ +E         K  S+KL                  V+  ST 
Sbjct: 116 DQPTALKTKLPEGFFETEETSSAKHAAEKAPSLKLLAGDYEDDDEVEGEEYENVNEASTS 175

Query: 147 --KPSGV-----SAKTQALKSVVLENEMDELPN-GNAVHAEKGQPFKEHPEKSKQNAGSE 198
             KP+ +     ++    L +   E++M  + + G+ + A+  +   E  + + +     
Sbjct: 176 LQKPAEIPLPPPTSSADRLPADFFESKMPLVSHSGSVLKADIQEKIVERKDNTAE----- 230

Query: 199 AKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLEEEEID 258
                 ALPEGFFD+ +AD   R +   K  +  E++E++K I++ +  V D +  EE +
Sbjct: 231 ------ALPEGFFDDPEADAKVRKVDAPKDQMDKEWEEFQKEIRQ-VNSVSDAIVAEEDE 283

Query: 259 AAEMIEEYESVDQK 272
              +  + + +D++
Sbjct: 284 EGRLDRQIDEIDEQ 297

May act as a regulator of the cell cycle in embryos by participating in control of M phase.
Xenopus tropicalis (taxid: 8364)

>sp|Q8R1N0|ZN830_MOUSE Zinc finger protein 830 OS=Mus musculus GN=Znf830 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 115/266 (43%), Gaps = 42/266 (15%)

Query: 7   KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
           + + R K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct: 22  RRLMREKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAE 81

Query: 67  IKA--GAT-GNNTRVVSDAAKPEAG-VDSSRSESGSASQNAELE-----NSAKLGKAR-P 116
           +K   GAT G +T  V  A K  A  V+S  ++   AS   +++     +SA L  AR  
Sbjct: 82  LKGAKGATQGPSTGTVPQATKRRATDVESQDAKKAKASAGPQVQPSTSASSANLDAARAA 141

Query: 117 PS-----VLPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELP 171
           PS     +LP   +D++E +  +    +  D     P     K  +L S   E   + LP
Sbjct: 142 PSKPGLGLLPD--YDDEEEEEEEGGGEERRDSSKHLPDA-QGKEHSLAS-PRETTSNVLP 197

Query: 172 NGNAVHAEKGQPFKEHPEKSKQ--NAGSEAK------------QIKGALPEGFFDNKDAD 217
           N          PF  +P K+    ++GS  K                ALPEGFFD+ + D
Sbjct: 198 N---------DPFNTNPPKAPLVPHSGSIEKAEIHEKVVERRENTAEALPEGFFDDPEVD 248

Query: 218 LLARGIKPVKPDVKDEYKEYEKLIQE 243
              R +   K  +  E+ E++K +++
Sbjct: 249 AKVRKVDAPKDQMDKEWDEFQKAMRQ 274

Acts as an important regulator of the cell cycle in the preimplantation embryo by controlling different aspects of M phase.

Mus musculus (taxid: 10090)

>sp|Q63ZM9|ZN830_XENLA Zinc finger protein 830 OS=Xenopus laevis GN=znf830 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 106/272 (38%), Gaps = 54/272 (19%)

Query: 7   KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
           + + +AK      +KRI SPL +YN      C VC+ ++KS+  W AH   ++H E +  
Sbjct: 16  RKLMKAKQRESSSKKRIESPLAKYNSLGHLSCVVCNSLIKSELLWPAHILGKQHKEKVAE 75

Query: 67  IKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSV----LPS 122
           +K      ++        P   ++  R      S+  + E+    G    PS     LP 
Sbjct: 76  LKGTKATTSS--------PSNTIEYPRITKRKGSEPEKQESKRTKGSEDHPSASTTKLPE 127

Query: 123 NFFDNQEV------------------------------KRPKTDSVKLVDPDSTKPSGVS 152
            FF+ ++                               +  K  S  L+ P        +
Sbjct: 128 EFFEKEKTSSAGNAPSLKLLAGDYEDVDDDDAEEGEEYENAKEASSSLLKPAEIPLPPPT 187

Query: 153 AKTQALKSVVLENEMDELPN-GNAVHAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFF 211
           +    L +   EN+M  + + G+ + A+  +   E  E + +           ALPEGFF
Sbjct: 188 SSADNLPADFFENKMPLVSHSGSVLKADIQEKIVERKENTAE-----------ALPEGFF 236

Query: 212 DNKDADLLARGIKPVKPDVKDEYKEYEKLIQE 243
           D+ + D   R +   K  +  E++E++K I++
Sbjct: 237 DDPEVDAKVRKVDAPKDQMDKEWEEFQKEIRQ 268

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Xenopus laevis (taxid: 8355)

>sp|Q3MHS2|ZN830_RAT Zinc finger protein 830 OS=Rattus norvegicus GN=Znf830 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 111/270 (41%), Gaps = 43/270 (15%)

Query: 7   KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
           + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct: 22  RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAE 81

Query: 67  IKA--GATGN-------------NTRVVS-DAAKPEAGVDSSRSESGSASQNAELEN--S 108
           +K   GAT                T V S DA K +A VD  +  + ++S N E     +
Sbjct: 82  LKGAKGATQGPSAGTAPQPTKRKTTDVESQDAKKAKASVDQVQPSTSASSANFEKSGKEA 141

Query: 109 AKLGKARPPSVLPSNFFDNQEVKRPKTDSVKLVDPDSTKP-SGVSAKTQALKSVVLENEM 167
            ++  ++    L  ++ + +E +  +         DS+K       +  +L S   E   
Sbjct: 142 TRVASSKTGLGLLPDYEEEEEEEEEEELGGGEERRDSSKHLPDAQGREHSLAS-PRETTS 200

Query: 168 DELPNGNAVHAEKGQPFKEHPEKSKQ--NAGSEAK------------QIKGALPEGFFDN 213
           + LPN          PF  +P K+    ++GS  K                ALPEGFFD+
Sbjct: 201 NVLPN---------DPFNTNPPKAPLVPHSGSIEKAEIHEKVVERRENTAEALPEGFFDD 251

Query: 214 KDADLLARGIKPVKPDVKDEYKEYEKLIQE 243
            + D   R +   K  +  E+ E++K +++
Sbjct: 252 PEVDAKVRKVDAPKDQMDKEWDEFQKAMRQ 281

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Rattus norvegicus (taxid: 10116)

>sp|Q96NB3|ZN830_HUMAN Zinc finger protein 830 OS=Homo sapiens GN=ZNF830 PE=1 SV=2

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 7  KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
          + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct: 22 RRLMKEKQRLSTSRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query: 67 IKAG 70
          +K  
Sbjct: 82 LKGA 85

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
24461854	344	CTV.12 [Citrus trifoliata]	1.0	0.790	0.883	1e-134
224065088	331	predicted protein [Populus trichocarpa]	0.977	0.803	0.579	2e-74
357491925	325	Zinc finger protein [Medicago truncatula	0.966	0.809	0.579	5e-72
356559669	326	PREDICTED: zinc finger protein 830-like	0.948	0.791	0.580	3e-71
356499554	326	PREDICTED: zinc finger protein 830-like	0.948	0.791	0.583	4e-71
255558696	375	Coiled-coil domain-containing protein, p	0.974	0.706	0.514	2e-68
449460630	305	PREDICTED: zinc finger protein 830-like	0.893	0.796	0.560	1e-67
388512271	304	unknown [Lotus japonicus]	0.878	0.786	0.546	2e-67
225443180	328	PREDICTED: zinc finger protein 830-like	0.856	0.710	0.595	3e-67
297832920	313	hypothetical protein ARALYDRAFT_477529 [	0.871	0.757	0.509	9e-58

>gi|24461854|gb|AAN62341.1|AF506028_8 CTV.12 [Citrus trifoliata]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/284 (88%), Positives = 260/284 (91%), Gaps = 12/284 (4%)

Query: 1   MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH 60
           MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH
Sbjct: 1   MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH 60

Query: 61  HEAIKNIKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSVL 120
           HEAIKNIKAGATGNN+R+VSDAAKPEAG +SSRSES SASQN E+E+SAKLGKAR  SVL
Sbjct: 61  HEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNVEIESSAKLGKARTSSVL 120

Query: 121 PSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEK 180
           PSNFFD+QEVKRPKTDSVKLVDPDS K SGVSAKTQA+KSVVLENEMDELPNGNAV A+K
Sbjct: 121 PSNFFDSQEVKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKK 180

Query: 181 GQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKL 240
           GQP KEHPEKSKQN  SEAKQIKGALPEGFFDNK+ADLLARGIKPVKPDVKDEYKEYEKL
Sbjct: 181 GQPLKEHPEKSKQNVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKL 240

Query: 241 IQEDLKQVDDRLEEEE------------IDAAEMIEEYESVDQK 272
           IQEDLKQVDDR EEEE            IDAAEMIEEYESVDQK
Sbjct: 241 IQEDLKQVDDRFEEEENINNLKWTCEMQIDAAEMIEEYESVDQK 284

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065088|ref|XP_002301664.1| predicted protein [Populus trichocarpa] gi|222843390|gb|EEE80937.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 161/278 (57%), Positives = 206/278 (74%), Gaps = 12/278 (4%)

Query: 1   MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH 60
           MDAA+KKA+FR+KLNAQ+KEK+I+SPLVRYNE DQPVCRVCDVVLKS+ QWDAHQASRKH
Sbjct: 1   MDAAKKKALFRSKLNAQRKEKKIDSPLVRYNELDQPVCRVCDVVLKSEFQWDAHQASRKH 60

Query: 61  HEAIKNIKAGATGNNTRVVSDA-AKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSV 119
            EAI NIKA A     + V++A ++P A    S+    +  Q A+ E+  +L   RP S 
Sbjct: 61  IEAINNIKANAA--RLKNVNNAKSEPSAVSTGSKHADNAQLQVAKSESLTQL--PRPQSA 116

Query: 120 LPSNFFDNQEVKRPKTDSVKLVDPDST-KPSGVSAKTQALKSVVLENEMDELPNGNAVHA 178
           LP +FFDN+E KR KTD+VK  + DS+ KP+G S +T+A +S +LE+E   LP+GN +  
Sbjct: 117 LPPDFFDNKEAKRQKTDAVKPSELDSSLKPAG-SIQTKATRS-LLEDETGGLPSGNHLQT 174

Query: 179 EKGQPFK----EHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEY 234
           +  +  +           + + S+AKQ +GALPEGFFDNK+ADL ARGIKPVKPDV DEY
Sbjct: 175 KNTEDARGITNTPTPTPTEISDSQAKQGQGALPEGFFDNKEADLRARGIKPVKPDVNDEY 234

Query: 235 KEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQK 272
           KE+EKLIQ DL++VDDRLEEEE+DAAE IEE E+++QK
Sbjct: 235 KEFEKLIQGDLREVDDRLEEEEVDAAETIEEAETLEQK 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491925|ref|XP_003616250.1| Zinc finger protein [Medicago truncatula] gi|355517585|gb|AES99208.1| Zinc finger protein [Medicago truncatula]

 Score =  276 bits (707), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 160/276 (57%), Positives = 196/276 (71%), Gaps = 13/276 (4%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKK+KRI+SPLVRYNEFDQPVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKDKRIDSPLVRYNEFDQPVCRVCDVVLKSESLWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSV 119
           H EAI N+KA A G   +     AKP+  +  ++ E  S SQ    ++  ++ K +  SV
Sbjct: 61  HREAITNLKANAAGLTKQ---SNAKPD--IPKAKPEQPSGSQFKIPKSPQEVPKPQSSSV 115

Query: 120 LPSNFFDNQEVKRPKT--DSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDEL-PNGNAV 176
           LP +FFDN + K+ ++  DSV LVD D  +  G SA++    SV    E D    N N  
Sbjct: 116 LPPDFFDNNDAKKTRSEKDSVHLVDSDLGRNMGASAQS----SVSNSKEKDHFHGNNNPT 171

Query: 177 HAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKE 236
            ++  Q   E  + S +   +E KQ KGALPEGFFDNK+ADL ARGIK VKPDVKDEYKE
Sbjct: 172 QSKVNQATVETKQTSVKTIDAEIKQGKGALPEGFFDNKEADLRARGIKLVKPDVKDEYKE 231

Query: 237 YEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQK 272
           +EKLIQEDL++VDDR+EEEEIDAAEMIEE ESV+Q+
Sbjct: 232 FEKLIQEDLQEVDDRMEEEEIDAAEMIEEAESVEQR 267

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559669|ref|XP_003548121.1| PREDICTED: zinc finger protein 830-like [Glycine max]

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 163/281 (58%), Positives = 193/281 (68%), Gaps = 23/281 (8%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKKEKRI SPLVRYNEFDQPVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKEKRIESPLVRYNEFDQPVCRVCDVVLKSESLWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATG----NNTRVVSDA----AKPEAGVDSSRSESGSASQNAELENSAKL 111
           H EAI N+KA A G    NN + V+D+    AKPE  +DS         Q    E S  +
Sbjct: 61  HREAISNLKANAAGLTQHNNAKPVADSSFSKAKPEHSLDS---------QFKPPEASQLV 111

Query: 112 GKARPPSVLPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELP 171
            K +  SVLP  FFD+ +    KT S  LVD D  + +GVSAK+Q      LE +  +  
Sbjct: 112 SKPQSSSVLPPGFFDDSD--SGKTRSEHLVDSDLGRKAGVSAKSQVSN---LEKDKGQFD 166

Query: 172 NGNAVHAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVK 231
           + N   +   Q   +  + S +   +E +Q+KG LPEGFFDNK+ADL ARGIK VKPDVK
Sbjct: 167 DNNVAKSNVSQATTDSRQTSVKTTDTEIQQVKGILPEGFFDNKEADLRARGIKLVKPDVK 226

Query: 232 DEYKEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQK 272
           DEYKE+EKLIQEDL++VDDRLEEEEIDAAEMIEE E V+QK
Sbjct: 227 DEYKEFEKLIQEDLQEVDDRLEEEEIDAAEMIEEEEVVEQK 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499554|ref|XP_003518604.1| PREDICTED: zinc finger protein 830-like [Glycine max]

 Score =  274 bits (700), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 164/281 (58%), Positives = 192/281 (68%), Gaps = 23/281 (8%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKK+KRI SPLVRYNEFD PVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKKKRIESPLVRYNEFDLPVCRVCDVVLKSESLWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATG----NNTRVVSDA----AKPEAGVDSSRSESGSASQNAELENSAKL 111
           H EAI N+KA A G    N  + V+D     AKPE  +DS         Q+   E S  +
Sbjct: 61  HREAISNLKANAAGLTQHNIAKPVADTSFFKAKPEHSLDS---------QSKAPEASQVV 111

Query: 112 GKARPPSVLPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELP 171
            K +  SVLP  FFD+      KT S  LVD D  + +GVSA++Q L    LE E     
Sbjct: 112 SKPQSSSVLPPGFFDDS--NSGKTRSEHLVDSDLGRKAGVSAQSQVLN---LEKEKGHFH 166

Query: 172 NGNAVHAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVK 231
           + NA  +  GQ   E  +   ++  +E +QIKG LPEGFFDNK+ADL ARGIK VKPDVK
Sbjct: 167 DNNAAKSNVGQAAMESRQTPVKSTDTEIQQIKGTLPEGFFDNKEADLRARGIKLVKPDVK 226

Query: 232 DEYKEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQK 272
           DEYKE+EKLIQEDL++VDDRLEEEEIDAAEMIEE E V+QK
Sbjct: 227 DEYKEFEKLIQEDLREVDDRLEEEEIDAAEMIEEEEVVEQK 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558696|ref|XP_002520372.1| Coiled-coil domain-containing protein, putative [Ricinus communis] gi|223540419|gb|EEF41988.1| Coiled-coil domain-containing protein, putative [Ricinus communis]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 164/319 (51%), Positives = 203/319 (63%), Gaps = 54/319 (16%)

Query: 1   MDAA-RKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDAA +KKA+FRAKLNAQKK+KRI+SPLVRYNE DQPVCR+C+VVLKS+S W AHQASRK
Sbjct: 1   MDAAAKKKALFRAKLNAQKKDKRIDSPLVRYNESDQPVCRICNVVLKSESLWAAHQASRK 60

Query: 60  HHEAIKNIKAGATGNNTRVVSDAAKPEAGVDSSR--SESGSASQNAELENSAKLGKARPP 117
           HHEAI NIK  A   + RV  ++ KPEA  +++R   E+ +   + + E S +L K +  
Sbjct: 61  HHEAINNIKNAA--GHLRV--NSTKPEAHKENTRPKYENDAELHDTKSEPSTRLTKPQSS 116

Query: 118 SVLPS-------------------------------------------NFFDNQEVKRPK 134
           SVLP+                                           NFFD+ E KR K
Sbjct: 117 SVLPADFFDTHKTETTLPKHAHYVELGDKMPEPSSKSSKHQSSSVLPPNFFDDPEAKRQK 176

Query: 135 TDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEKGQPFKEHPEKSKQN 194
            D+ K V+ +S K SG SA T+     +LE+EMD   +GN +  +     +E        
Sbjct: 177 IDTAKSVNSNSHKKSGNSAYTKV--ESLLEDEMDG-SSGNDMETKNTGRAREFVHTVDIT 233

Query: 195 AGSE-AKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLE 253
            GS   KQ+KGALPEGFFD+K+ADL ARGIK VKPDVKDEYKE+EKLIQEDL++VDDRLE
Sbjct: 234 GGSRYMKQVKGALPEGFFDDKEADLRARGIKLVKPDVKDEYKEFEKLIQEDLQEVDDRLE 293

Query: 254 EEEIDAAEMIEEYESVDQK 272
           EEEIDAAEMIEE E+V+QK
Sbjct: 294 EEEIDAAEMIEEAETVEQK 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460630|ref|XP_004148048.1| PREDICTED: zinc finger protein 830-like [Cucumis sativus] gi|449516880|ref|XP_004165474.1| PREDICTED: zinc finger protein 830-like [Cucumis sativus]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 153/273 (56%), Positives = 192/273 (70%), Gaps = 30/273 (10%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A++KA+FRAKLNAQKK+KRI+SPLVRYNE DQPVCRVCD+VLKS++ WDAHQ+SR+
Sbjct: 1   MDAQAKRKALFRAKLNAQKKDKRIDSPLVRYNELDQPVCRVCDMVLKSEAYWDAHQSSRR 60

Query: 60  HHEAIKNIKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSV 119
           HHEAI+N+KA A G +  V +  A+  A + ++R       +      S++L K    SV
Sbjct: 61  HHEAIQNLKASAAGRSG-VENIKAEAPAELPNNRPIDSKEKKEMTGGTSSELPKRPSSSV 119

Query: 120 LPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAE 179
           LPS+FFD Q  KR KT   K ++ DS   SG  A++Q +            P  + ++  
Sbjct: 120 LPSDFFD-QNAKRLKTG--KDIETDSR--SGSIAQSQVI------------PKASDLN-- 160

Query: 180 KGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEK 239
                    +KS  NAGSE KQIKGALPEGFFD+K+ADL A GIK VKPDVKDEYKE+EK
Sbjct: 161 ---------KKSSMNAGSEGKQIKGALPEGFFDDKEADLRAHGIKLVKPDVKDEYKEFEK 211

Query: 240 LIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQK 272
           LIQEDL++VDDRLEEEEIDAAEMIEE E+++QK
Sbjct: 212 LIQEDLQEVDDRLEEEEIDAAEMIEEAETLEQK 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512271|gb|AFK44197.1| unknown [Lotus japonicus]

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 152/278 (54%), Positives = 178/278 (64%), Gaps = 39/278 (14%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKKEKRI SPLVRYNEFDQPVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKEKRIESPLVRYNEFDQPVCRVCDVVLKSESNWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATG----NNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKAR 115
           H EAI N+KA A G    NN +     AKPE           S SQ    ++S ++ K +
Sbjct: 61  HREAISNLKANAAGLTQNNNAKREITKAKPE---------QPSVSQFKMPQSSQEVPKPQ 111

Query: 116 PPSVLPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNA 175
             SVLP NFFD+   ++  ++                          LENE       N 
Sbjct: 112 SSSVLPPNFFDDSHARKASSEKD------------------------LENEKGNFHANNT 147

Query: 176 VHAE-KGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEY 234
             ++   Q   E  + S + A  E K +K ALPEGFFDNK+ADL ARGIKPV+PD+KDEY
Sbjct: 148 AQSKVSSQAAMETRQTSDKTADKETKPVKEALPEGFFDNKEADLRARGIKPVRPDIKDEY 207

Query: 235 KEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQK 272
           KE+EKLIQEDLK+VDDR EEEEIDAAEMIEE ESV+QK
Sbjct: 208 KEFEKLIQEDLKEVDDRFEEEEIDAAEMIEEAESVEQK 245

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443180|ref|XP_002267521.1| PREDICTED: zinc finger protein 830-like [Vitis vinifera]

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 150/252 (59%), Positives = 182/252 (72%), Gaps = 19/252 (7%)

Query: 30  YNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNTRVVSDAAKPEAGV 89
           YNEFDQPVCRVCDV+LKS+S WDAHQASRKHHEAIKN+KA A G  TR  ++ AKPEA  
Sbjct: 27  YNEFDQPVCRVCDVILKSESLWDAHQASRKHHEAIKNVKANAAGL-TR--ANNAKPEA-- 81

Query: 90  DSSRSESGSASQNAELENSAKLGKARPPSVLPSNFFDNQEVKRPKT--DSVKLVDPDSTK 147
              + ES +   NA  E S  L KA+  S LP++FFDN   K+ K+  D VK +DPDS  
Sbjct: 82  --PKPESSTVLSNATSEPSMNLQKAQLSSGLPADFFDNHVTKKQKSGNDDVKFLDPDSYN 139

Query: 148 PSG--VSAKTQALKSVVLENEMDELPNGNAVHAEK-GQPFKEHPEKSKQNAG----SEAK 200
            +G   SA+TQ+++ +  +N +D L   ++ H+EK G+    H     Q +G    SE K
Sbjct: 140 KTGGSASAQTQSMEPLESKNNLDGL---SSSHSEKMGKSGIRHARDLTQTSGKIVGSETK 196

Query: 201 QIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLEEEEIDAA 260
           ++KGALPEGFFDNKDADL ARGI PVKPDVKDEYKE+EKLIQEDLK+VD+RLEEEE DAA
Sbjct: 197 EVKGALPEGFFDNKDADLRARGIVPVKPDVKDEYKEFEKLIQEDLKEVDNRLEEEEFDAA 256

Query: 261 EMIEEYESVDQK 272
           EMIEE ESV+QK
Sbjct: 257 EMIEEAESVEQK 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832920|ref|XP_002884342.1| hypothetical protein ARALYDRAFT_477529 [Arabidopsis lyrata subsp. lyrata] gi|297330182|gb|EFH60601.1| hypothetical protein ARALYDRAFT_477529 [Arabidopsis lyrata subsp. lyrata]

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 137/269 (50%), Positives = 169/269 (62%), Gaps = 32/269 (11%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FR+KLNA+KK+ RI+SPLVRYNE DQPVCRVC+VVLKS+S WD HQASRK
Sbjct: 1   MDAQAKKKAMFRSKLNAKKKDTRIDSPLVRYNESDQPVCRVCNVVLKSESLWDVHQASRK 60

Query: 60  HHEAIKNIKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSV 119
           HHEAI N+KA A G     V    KP            + ++ A+ E  AK  K++  S 
Sbjct: 61  HHEAIDNLKASAAG-----VQRGTKP------------AETRPAKTEALAKSSKSQTSSG 103

Query: 120 LPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNG----NA 175
           LP NFF+N E  R +      V+P  +K   +    Q + S    N    LP G      
Sbjct: 104 LPPNFFENHEPARAE------VEPAISK--NIEQSKQTIGSET-NNSKGPLPAGFFDNQK 154

Query: 176 VHAEKGQPFKEHPEKSKQNAGSEAKQ-IKGALPEGFFDNKDADLLARGIKPVKPDVKDEY 234
             +   +   E  +   Q  GSE K  +KG LP GFFDNK+ADLLARGIK VKPD+KDEY
Sbjct: 155 TDSSNTKTTSEPKQSQTQTTGSETKSVVKGNLPTGFFDNKEADLLARGIKLVKPDIKDEY 214

Query: 235 KEYEKLIQEDLKQVDDRLEEEEIDAAEMI 263
           KE+EKLIQ+DL+ VD R+EEEE+DAAE I
Sbjct: 215 KEFEKLIQDDLQVVDSRMEEEEVDAAETI 243

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
TAIR|locus:2075422	313	AT3G02860 [Arabidopsis thalian	0.639	0.555	0.421	9.4e-27
MGI|MGI:1914233	363	Zfp830 "zinc finger protein 83	0.856	0.641	0.272	2.1e-16
UNIPROTKB|I3L6H7	367	ZNF830 "Uncharacterized protei	0.389	0.288	0.268	3.1e-11
UNIPROTKB|A3KN01	373	ZNF830 "Uncharacterized protei	0.823	0.600	0.240	1.8e-07
ZFIN|ZDB-GENE-040426-1834	326	zgc:77398 "zgc:77398" [Danio r	0.757	0.631	0.231	2.9e-07
UNIPROTKB|E2RNS2	371	ZNF830 "Uncharacterized protei	0.415	0.304	0.285	2.9e-07
UNIPROTKB|Q96NB3	372	ZNF830 "Zinc finger protein 83	0.691	0.505	0.228	7.6e-06
RGD|1562573	370	Zfp830 "zinc finger protein 83	0.466	0.343	0.255	1.7e-05
UNIPROTKB|F1NPL1	368	ZNF830 "Uncharacterized protei	0.617	0.456	0.247	2.8e-05

TAIR|locus:2075422 AT3G02860 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 78/185 (42%), Positives = 102/185 (55%)

Query:     1 MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
             MDA A+KKA+FR+KLNA+KK+ RI+SPLVRYNE DQPVCRVC+VVLKS+S WD HQASRK
Sbjct:     1 MDAQAKKKAMFRSKLNAKKKDTRIDSPLVRYNESDQPVCRVCNVVLKSESLWDVHQASRK 60

Query:    60 HHEAIKNIKAGATG---NNTRVVSDAAKPEAGVDSSRSESGSASQNAELENS----AKLG 112
             HHEAI ++KA A G    +    +   K EA   SS S++ S       EN     A++ 
Sbjct:    61 HHEAIDSLKASAAGVQRGSKPAETRPTKIEALAKSSNSQTSSGLPPNFFENREPARAEVE 120

Query:   113 KARPPSVLPSNFFDNQEVKRPKTD-SVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELP 171
              A+  ++  S      E  + K        D   T  S     ++  +S       +  P
Sbjct:   121 PAKSKNLEQSKHTIGSETNKSKGPLPAGFFDNQKTDSSNTKTTSEPKQSQTQTTGPETKP 180

Query:   172 --NGN 174
               NGN
Sbjct:   181 MVNGN 185

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1914233 Zfp830 "zinc finger protein 830" [Mus musculus (taxid:10090)]

 Score = 207 (77.9 bits), Expect = 2.1e-16, P = 2.1e-16
 Identities = 70/257 (27%), Positives = 112/257 (43%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + R K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMREKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAE 81

Query:    67 IKA--GAT-GNNTRVVSDAAKPEA-GVDSSRSESGSASQNAELE-----NSAKLGKARP- 116
             +K   GAT G +T  V  A K  A  V+S  ++   AS   +++     +SA L  AR  
Sbjct:    82 LKGAKGATQGPSTGTVPQATKRRATDVESQDAKKAKASAGPQVQPSTSASSANLDAARAA 141

Query:   117 PS-----VLPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELP 171
             PS     +LP   +D++E +  +    +  D     P     K  +L S   E   + LP
Sbjct:   142 PSKPGLGLLPD--YDDEEEEEEEGGGEERRDSSKHLPDA-QGKEHSLASP-RETTSNVLP 197

Query:   172 NGNAVHAEKGQPFKEHP---EKSK--QNAGSEAKQIKGALPEGFFDNKDADLLARGIKPV 226
             N          P   H    EK++  +      +    ALPEGFFD+ + D   R +   
Sbjct:   198 NDPFNTNPPKAPLVPHSGSIEKAEIHEKVVERRENTAEALPEGFFDDPEVDAKVRKVDAP 257

Query:   227 KPDVKDEYKEYEKLIQE 243
             K  +  E+ E++K +++
Sbjct:   258 KDQMDKEWDEFQKAMRQ 274

GO:0000077 "DNA damage checkpoint" evidence=IMP

GO:0001832 "blastocyst growth" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005694 "chromosome" evidence=IEA

GO:0007049 "cell cycle" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016607 "nuclear speck" evidence=IDA

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0060729 "intestinal epithelial structure maintenance" evidence=IMP

UNIPROTKB|I3L6H7 ZNF830 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 126 (49.4 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
 Identities = 32/119 (26%), Positives = 56/119 (47%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPP-SVLPSNF 124
             +K GA         +A +   G  + R    + SQ+A+   ++ + + +P  S LP+NF
Sbjct:    82 LK-GA--------KEATQ---GPSAKRKAPDAESQDAKRVKASPVPQVQPSTSALPTNF 128

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

UNIPROTKB|A3KN01 ZNF830 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 143 (55.4 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 59/245 (24%), Positives = 105/245 (42%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPP-SVLPSNFF 125
             +K GA     +  S +A P++   + R    S SQ+A+   ++ + + +P  S LP+NF 
Sbjct:    82 LK-GAK-EAAQGPSASAVPQS---TKRKAPDSESQDAKRAKASLVPQVQPSTSALPTNF- 135

Query:   126 DNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEKGQPFK 185
             D    K  K  +   V     K SG+            E+E +E   G     +     +
Sbjct:   136 D----KAGKESTRATVG----KASGLGLLPDYDDE---EDEEEEKGGGGGEGKKGDACKQ 184

Query:   186 EHPEKSKQNAGSEAKQIKGA-LPEGFFDNKD--ADLLARGIKPVKPDVKDEYKEYEKLIQ 242
                 +SK+++ S +++  G+ LP  F D     A L+       K ++ ++  E  +   
Sbjct:   185 PSTSQSKEHSLSSSREATGSRLPSNFSDTNPPKAPLIPHSGSIEKAEIHEKVVERRENTA 244

Query:   243 EDLKQ 247
             E L +
Sbjct:   245 EALPE 249

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

ZFIN|ZDB-GENE-040426-1834 zgc:77398 "zgc:77398" [Danio rerio (taxid:7955)]

 Score = 140 (54.3 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 53/229 (23%), Positives = 96/229 (41%)

Query:    19 KEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNTRV 78
             ++KR+ SP  RY+   Q +C +CD  +K+   W  H   ++H + ++ +K+     +T  
Sbjct:    31 RQKRVESPFARYSGAGQLMCALCDAPVKNALLWQTHVLGKQHKDKLQELKSRTAPAHTPA 90

Query:    79 VSD--AAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSV-LPSNFFDNQEVKRPKT 135
              +   A  P A   SS +   +A         AKL       + L +  +D+ +      
Sbjct:    91 PAHTPAHTPAAASSSSSTLKRAAEPPPAPGKRAKLQTGAGAGLGLLAGHYDDDDDDEGGA 150

Query:   136 DSVKLVDP-DSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEKGQPFKEHPEKSKQN 194
                K   P DS  P+       A    +  +       G+   AE+ Q  +E PE   ++
Sbjct:   151 GERKTAPPTDSALPADFFDSGPAPAPPISHS-------GSVSKAEQ-QESQEPPENRPES 202

Query:   195 AGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLIQE 243
                        LPEGFFD+   D   R +   K  ++ E++E++K +++
Sbjct:   203 -----------LPEGFFDDPVRDAQVRQVDTPKDQLEREWEEFQKEMRQ 240

GO:0046872 "metal ion binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|E2RNS2 ZNF830 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 141 (54.7 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 34/119 (28%), Positives = 59/119 (49%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPP-SVLPSNF 124
             +K GA    T+  S +A P++   + R    +  Q+A+   ++ L + +P  S LP+NF
Sbjct:    82 LK-GAR-EATQGPSSSAAPQS---AKRKVPDADGQDAKRLKASPLPQVQPSTSALPTNF 135

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

UNIPROTKB|Q96NB3 ZNF830 "Zinc finger protein 830" [Homo sapiens (taxid:9606)]

 Score = 129 (50.5 bits), Expect = 7.6e-06, P = 7.6e-06
 Identities = 47/206 (22%), Positives = 80/206 (38%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTSRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKAR-PPSVLPSNFF 125
             +K GA     +  S  +   +   S + ++  A      +   K  KA   P V PS   
Sbjct:    82 LK-GA-----KEASQGSSASSAPHSVKRKAPDAD-----DQDVKRAKATLVPQVQPSTSA 130

Query:   126 DNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEKGQPFK 185
                   +   + ++   P  +KPSG+S           E E +E  +G     +  +P  
Sbjct:   131 WTTNFDKIGKEFIRAT-P--SKPSGLSLLPDYEDEE--EEEEEEEGDGERKRGDASKPLS 185

Query:   186 EHPEKSKQNAGSEAKQIKGALPEGFF 211
             +   K + +  S  +     LP  FF
Sbjct:   186 DAQGK-EHSVSSSREVTSSVLPNDFF 210

GO:0007067 "mitosis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

RGD|1562573 Zfp830 "zinc finger protein 830" [Rattus norvegicus (taxid:10116)]

 Score = 126 (49.4 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 34/133 (25%), Positives = 60/133 (45%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAE 81

Query:    67 IKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSVLPSNFFD 126
             +K GA G  T+  S    P+    + R  +   SQ+A+ +  A + + +P +   S  F+
Sbjct:    82 LK-GAKGA-TQGPSAGTAPQP---TKRKTTDVESQDAK-KAKASVDQVQPSTSASSANFE 135

Query:   127 NQEVKRPKTDSVK 139
                 +  +  S K
Sbjct:   136 KSGKEATRVASSK 148

GO:0000077 "DNA damage checkpoint" evidence=ISO

GO:0001832 "blastocyst growth" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0007049 "cell cycle" evidence=ISO

GO:0007067 "mitosis" evidence=IEA;ISO

GO:0016607 "nuclear speck" evidence=ISO

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0060729 "intestinal epithelial structure maintenance" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1NPL1 ZNF830 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 124 (48.7 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 46/186 (24%), Positives = 76/186 (40%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAI-- 64
             + + R K      +KRI SP  +Y       C +C   +KS+  W  H   ++H E +  
Sbjct:    22 RRLMREKKRQNADKKRIESPFAKYPRLGHLSCTLCSAPVKSELLWQTHVLGKQHRERVAE 81

Query:    65 -KNIKAGATGNNTRVVSDAAKPE-AGVDSSRSESGSASQNAELENSAKLGKARPPSVLPS 122
              K  K  A+G+     S A K + A  +S++ +    + +    +++  G       LP+
Sbjct:    82 LKGAKQAASGSAAGASSHAVKRKTADAESTQLKRSKGTDDKPHTSTSTSG-------LPA 134

Query:   123 NFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAV-H-AEK 180
             +FFD  E        +K   P    PS +S           E E  + PN ++V H  E 
Sbjct:   135 DFFDESEQNNANKQFLK--GPG---PSLLSGNYDDDDEEEEEEEEQDQPNTSSVMHKTEI 189

Query:   181 GQPFKE 186
               P +E
Sbjct:   190 PPPTRE 195


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.307   0.126   0.345    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      272       257   0.00086  114 3  11 23  0.45    34
                                                     32  0.48    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  177 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.85u 0.08s 29.93t   Elapsed:  00:00:01
  Total cpu time:  29.85u 0.08s 29.93t   Elapsed:  00:00:01
  Start:  Sat May 11 12:19:22 2013   End:  Sat May 11 12:19:23 2013

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	272
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	5e-06
pfam12171	27	pfam12171, zf-C2H2_jaz, Zinc-finger double-strande	8e-04

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 41.7 bits (99), Expect = 5e-06
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 CRVCDVVLKSDSQWDAHQASRKH 60
          C +C+V   S+SQ  +H   +KH
Sbjct: 3  CELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 35 QPVCRVCDVVLKSDSQWDAHQASRKH 60
          Q  C  CD   KS++  + H  S+KH
Sbjct: 1  QFYCVACDKYFKSENALENHLKSKKH 26

This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	272
KOG3032	264	consensus Uncharacterized conserved protein [Funct	100.0
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.09
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.69
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	97.22
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.91
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	96.44
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	95.76
PLN02748	468	tRNA dimethylallyltransferase	95.23
KOG4727	193	consensus U1-like Zn-finger protein [General funct	91.94
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	91.17
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	89.69

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.6e-46  Score=335.24  Aligned_cols=205  Identities=43%  Similarity=0.649  Sum_probs=155.1

Q ss_pred             cHHHHHHHHHHHHHHHHhhhcccCCccccCCCCCceeecccccccCcchhHHhhCChhHHHHHHHhhhhccCCCCcccCC
Q 024130            2 DAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNTRVVSD   81 (272)
Q Consensus         2 d~~~~ka~~Rallr~~r~~krI~~P~A~Yn~~GqL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~lk~~~~~~~~~~~~~   81 (272)
                      --+++|+|||++|+..+...||++|||+||++|+|+|+|||++|| ++||++|++||+||++|..||........     
T Consensus         2 nq~~~krl~k~k~~~kk~~~ri~splakyn~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs~~~Kv~k-----   75 (264)
T KOG3032|consen    2 NQAKKKRLFKSKLNAKKKDTRIDSPLAKYNESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKSRGSKVAK-----   75 (264)
T ss_pred             chHHHHHHHHHHhhccCcccccccHhhccCCCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHhhhccccc-----
Confidence            348999999999999999999999999999999999999999999 89999999999999999999942222211     


Q ss_pred             CCCCCCCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCCCCccccccccCCCCCCccccCCCCCCCCCCcccchhccch
Q 024130           82 AAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSVLPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSV  161 (272)
Q Consensus        82 ~a~p~~~~~krk~~~~~~~~~k~~K~~~~~~~~~~~S~LP~dFFd~~~~~~~~~~~~~ll~~d~~~~~~~~~~~~~~~~~  161 (272)
                         +.   +.+.+..+.+...+. ..    -+.+.+|.||++||+....+.+.               |+...+.     
T Consensus        76 ---~~---~T~~p~~p~spn~kt-s~----~pnk~pstlPdk~~~~eqekh~~---------------gd~e~ka-----  124 (264)
T KOG3032|consen   76 ---TR---PTKIPALPKSPNSKT-SF----FPNKEPSTLPDKSKNLEQEKHTI---------------GDEENKA-----  124 (264)
T ss_pred             ---Cc---CccCccCCCCCCccc-cc----cCCCCCCcCCCCCcchhcccCCC---------------Cccchhc-----
Confidence               11   112222221111111 11    12235699999998754222211               1111111     


Q ss_pred             hhhccccCCCCCCccccCCCCCCCCCCcchhccchhhhhhhhcCCCCCCCCChhhhhhhhCCCCCCccHHHHHHHHHHHH
Q 024130          162 VLENEMDELPNGNAVHAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLI  241 (272)
Q Consensus       162 p~e~~~~~LP~d~~~~~~~~~p~~~hs~s~~k~~~~E~k~~~~~LPeGFFDD~~~DakaR~v~~~k~~~~~E~~eF~k~i  241 (272)
                           .     ++|+.    +|              ++..+.++||+|||||++.|++||||..++++|++||++|+++|
T Consensus       125 -----q-----Gnfs~----~p--------------enent~e~lPegFFDdke~d~~vr~~~e~k~~~d~Ey~rfqkeI  176 (264)
T KOG3032|consen  125 -----Q-----GNFSN----QP--------------ENENTNENLPEGFFDDKEADLLVRGIKEVKPDIDDEYKRFQKEI  176 (264)
T ss_pred             -----c-----ccccC----Cc--------------cccchhhcCcccccCchhhhhhhhhccccchhHHHHHHHHHHHH
Confidence                 1     13432    22              24558999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHhhHHHHHHHHHHHhhhhhc
Q 024130          242 QEDLKQVDDRLEEEEIDAAEMIEEYESVDQ  271 (272)
Q Consensus       242 ~e~~~e~d~~~EEee~~aa~~~~e~~~~eq  271 (272)
                      ++++++++.++||+++|++..|+.-|--||
T Consensus       177 ~~~~tesd~iveEeeed~~l~reieeidEQ  206 (264)
T KOG3032|consen  177 QDDLTESDSIVEEEEEDAALTREIEEIDEQ  206 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998887777

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.09  E-value=2e-06  Score=55.41  Aligned_cols=33  Identities=24%  Similarity=0.590  Sum_probs=30.9

Q ss_pred             CCceeecccccccCcchhHHhhCChhHHHHHHH
Q 024130           34 DQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN   66 (272)
Q Consensus        34 GqL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~   66 (272)
                      |...|.+|++.+.+...|..|+.|++|+.++.+
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            678999999999999999999999999999975

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.69  E-value=1.6e-05  Score=49.47  Aligned_cols=27  Identities=37%  Similarity=0.642  Sum_probs=25.1

Q ss_pred             CceeecccccccCcchhHHhhCChhHH
Q 024130           35 QPVCRVCDVVLKSDSQWDAHQASRKHH   61 (272)
Q Consensus        35 qL~C~lC~~~VKsEslW~aH~~Sk~Hr   61 (272)
                      |..|.+|+..++++..|..|+.|+.||
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            468999999999999999999999997

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.00018  Score=72.00  Aligned_cols=35  Identities=31%  Similarity=0.633  Sum_probs=33.7

Q ss_pred             ceeecccccccCcchhHHhhCChhHHHHHHHhhhh
Q 024130           36 PVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAG   70 (272)
Q Consensus        36 L~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~lk~~   70 (272)
                      |.|+|||...|+|..|.-|.+||+|+++|..|++.
T Consensus       293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrqe  327 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQE  327 (508)
T ss_pred             eEEeeccccccchHHHHhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999873

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.91  E-value=0.00046  Score=41.52  Aligned_cols=25  Identities=28%  Similarity=0.603  Sum_probs=23.7

Q ss_pred             ceeecccccccCcchhHHhhCChhH
Q 024130           36 PVCRVCDVVLKSDSQWDAHQASRKH   60 (272)
Q Consensus        36 L~C~lC~~~VKsEslW~aH~~Sk~H   60 (272)
                      +.|.+|++...++..|..|++|++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            4699999999999999999999998

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=96.44  E-value=0.0043  Score=56.14  Aligned_cols=52  Identities=17%  Similarity=0.355  Sum_probs=45.6

Q ss_pred             ccCCccccCCCCCceeecccccccCcchhHHhhCChhHHHHHHHhhhhccCC
Q 024130           23 INSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGN   74 (272)
Q Consensus        23 I~~P~A~Yn~~GqL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~lk~~~~~~   74 (272)
                      .+.||..-|.+|.+.|.||+..--+|+-.-.|..||+|++|+.+-...+...
T Consensus        41 ~dDPyl~knh~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rrs~ekssl   92 (222)
T COG5246          41 MDDPYLSKNHTGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRRSEEKSSL   92 (222)
T ss_pred             ccCcchhhcCCCcEEeeeeccccccHHHHHHhhccchhhhhHHHHHHHhhcc
Confidence            5679999999999999999998888999999999999999999875544444

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=95.76  E-value=0.012  Score=53.67  Aligned_cols=63  Identities=16%  Similarity=0.300  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHhhhcccCCccccCCCCCceeecccccccCcchhHHhhCChhHHHHHHHhhh
Q 024130            5 RKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (272)
Q Consensus         5 ~~ka~~Rallr~~r~~krI~~P~A~Yn~~GqL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~lk~   69 (272)
                      .|+--+|.|+-..-  ---+.||---|-.|.+.|.||+.--.+|.-.-+|..||+|.+||++--.
T Consensus        25 ~RrerlrqLaleti--dl~kDPy~mkNh~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa   87 (222)
T KOG0227|consen   25 DRRERLRQLALETI--DLNKDPYFMKNHLGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAA   87 (222)
T ss_pred             HHHHHHHHHHHhhc--ccccCchhhhccCcceeehhhhhhhcchhhhhhhhccchhhHHHHHHHH
Confidence            34444555544331  1124599988999999999999999999999999999999999998433

>PLN02748 tRNA dimethylallyltransferase

Probab=95.23  E-value=0.012  Score=59.07  Aligned_cols=38  Identities=29%  Similarity=0.708  Sum_probs=32.8

Q ss_pred             CCceeecccc-cccCcchhHHhhCChhHHHHHHHhhhhc
Q 024130           34 DQPVCRVCDV-VLKSDSQWDAHQASRKHHEAIKNIKAGA   71 (272)
Q Consensus        34 GqL~C~lC~~-~VKsEslW~aH~~Sk~Hr~~v~~lk~~~   71 (272)
                      -+-+|-+|+. .+..|--|..|+.|+.||.++.++++.+
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k~~  455 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQKQ  455 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHhhh
Confidence            3447999997 7889999999999999999999887643

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=91.94  E-value=0.19  Score=45.20  Aligned_cols=42  Identities=21%  Similarity=0.337  Sum_probs=34.7

Q ss_pred             CccccCCCCCceeecccccccCcchhHHhhCChhHHHHHHHh
Q 024130           26 PLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNI   67 (272)
Q Consensus        26 P~A~Yn~~GqL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~l   67 (272)
                      +-..-+..|..-|-||+.+||.-.-+--|||+|.|.-|+..+
T Consensus        66 k~tp~sq~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms  107 (193)
T KOG4727|consen   66 KSTPRSQKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS  107 (193)
T ss_pred             cCCcccccCceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence            333446778899999999999866688899999999999764

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.17  E-value=0.16  Score=34.54  Aligned_cols=30  Identities=33%  Similarity=0.572  Sum_probs=19.2

Q ss_pred             eeecccccccCcc--hhHHhhCChhHHHHHHH
Q 024130           37 VCRVCDVVLKSDS--QWDAHQASRKHHEAIKN   66 (272)
Q Consensus        37 ~C~lC~~~VKsEs--lW~aH~~Sk~Hr~~v~~   66 (272)
                      -|-.|++-|.+.+  .|..|..|.+|++|+.+
T Consensus         5 yCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    5 YCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             ecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            5899999995444  89999999999999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=89.69  E-value=0.17  Score=43.20  Aligned_cols=38  Identities=16%  Similarity=0.284  Sum_probs=35.4

Q ss_pred             CCCCceeecccccccCcchhHHhhCChhHHHHHHHhhh
Q 024130           32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (272)
Q Consensus        32 ~~GqL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~lk~   69 (272)
                      ..||--|+.|....=+++.-..|..+|.||-+|..|+.
T Consensus        54 G~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~   91 (129)
T KOG3408|consen   54 GGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELRE   91 (129)
T ss_pred             CCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhccc
Confidence            67999999999998889999999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	272
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.87
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.4
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.4
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.94
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	87.87
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	80.33

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.87  E-value=0.00059  Score=55.22  Aligned_cols=37  Identities=19%  Similarity=0.377  Sum_probs=34.1

Q ss_pred             CCCCceeecccccccCcchhHHhhCChhHHHHHHHhh
Q 024130           32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK   68 (272)
Q Consensus        32 ~~GqL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~lk   68 (272)
                      ..+.+.|.+|++.+.++..+..|++||.|+.++.+++
T Consensus        90 ~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~  126 (127)
T 1zu1_A           90 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE  126 (127)
T ss_dssp             CCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             CCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence            5678899999999999999999999999999998763

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.40  E-value=0.0075  Score=49.69  Aligned_cols=38  Identities=16%  Similarity=0.313  Sum_probs=35.5

Q ss_pred             CCCCceeecccccccCcchhHHhhCChhHHHHHHHhhh
Q 024130           32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (272)
Q Consensus        32 ~~GqL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~lk~   69 (272)
                      ..|...|..|+....+++.+..|.+||.|+.++..|+.
T Consensus        47 GekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~   84 (124)
T 1zr9_A           47 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   84 (124)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence            56899999999999999999999999999999999874

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.40  E-value=0.0082  Score=48.46  Aligned_cols=35  Identities=43%  Similarity=0.624  Sum_probs=32.4

Q ss_pred             CceeecccccccCcchhHHhhCChhHHHHHHHhhh
Q 024130           35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (272)
Q Consensus        35 qL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~lk~   69 (272)
                      .+.|.+|++.+.+++.-..|..|+.|+.+|..+..
T Consensus        32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence            48999999999999999999999999999987655

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.94  E-value=0.013  Score=56.45  Aligned_cols=37  Identities=27%  Similarity=0.548  Sum_probs=32.0

Q ss_pred             CCceeecccc------cccCcchhHHhhCChhHHHHHHHhhhh
Q 024130           34 DQPVCRVCDV------VLKSDSQWDAHQASRKHHEAIKNIKAG   70 (272)
Q Consensus        34 GqL~C~lC~~------~VKsEslW~aH~~Sk~Hr~~v~~lk~~   70 (272)
                      -+-+|-+|+.      .+-.|.-|..|+.|+.||.++.+.++.
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~  401 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQ  401 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3458999997      688889999999999999999887654

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=87.87  E-value=0.27  Score=37.52  Aligned_cols=31  Identities=39%  Similarity=0.651  Sum_probs=26.5

Q ss_pred             ceeecccccccCc--chhHHhhCChhHHHHHHH
Q 024130           36 PVCRVCDVVLKSD--SQWDAHQASRKHHEAIKN   66 (272)
Q Consensus        36 L~C~lC~~~VKsE--slW~aH~~Sk~Hr~~v~~   66 (272)
                      --|--|++-|...  +.|..|++|++|+.|+..
T Consensus         4 YyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~   36 (77)
T 3cw1_L            4 FYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKD   36 (77)
T ss_pred             cccccCCceecCCCHHHHHHHHccHHHHHHHHH
Confidence            4699999999544  568999999999999987

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=80.33  E-value=0.65  Score=44.70  Aligned_cols=39  Identities=18%  Similarity=0.365  Sum_probs=34.4

Q ss_pred             CCCCCceeecccccccCcchhHHhhCChhHHHHHHHhhh
Q 024130           31 NEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (272)
Q Consensus        31 n~~GqL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~lk~   69 (272)
                      +..+.+-|..|....+++.+...|+.||+|..++++.|.
T Consensus       288 ~~~~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~k~  326 (402)
T 4dgw_A          288 SEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRN  326 (402)
T ss_dssp             ETTTEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHSHH
T ss_pred             CCCcCeeehhhhhhhccccccHHHhcccccchhHHHHHH
Confidence            357789999999999999999999999999998876544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	272
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	97.83
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	94.28
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	92.43

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=3.5e-06  Score=61.32  Aligned_cols=38  Identities=16%  Similarity=0.313  Sum_probs=35.8

Q ss_pred             CCCCceeecccccccCcchhHHhhCChhHHHHHHHhhh
Q 024130           32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (272)
Q Consensus        32 ~~GqL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~lk~   69 (272)
                      ..||.-|++|+...+++..|..|..||+||.+|.+|+.
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CCCEEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            36999999999999999999999999999999999965

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=94.28  E-value=0.011  Score=41.09  Aligned_cols=33  Identities=18%  Similarity=0.422  Sum_probs=29.9

Q ss_pred             CceeecccccccCcchhHHhhCChhHHHHHHHh
Q 024130           35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNI   67 (272)
Q Consensus        35 qL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~l   67 (272)
                      .-.|.|||+..-+..+=..|..||.|..++...
T Consensus        21 nk~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~   53 (55)
T d1zu1a2          21 SKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR   53 (55)
T ss_dssp             TTEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             hhhhhhhhcccCCHHHHHHHhhhhHHHHHHHHh
Confidence            448999999999999999999999999998754

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=92.43  E-value=0.03  Score=40.55  Aligned_cols=33  Identities=42%  Similarity=0.652  Sum_probs=30.9

Q ss_pred             CceeecccccccCcchhHHhhCChhHHHHHHHh
Q 024130           35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNI   67 (272)
Q Consensus        35 qL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~l   67 (272)
                      ...|-||+.++-+||---+|--|++|..+|..+
T Consensus        32 d~~CkvC~a~L~seSQriaHYeskkHa~kvr~y   64 (72)
T d1zu1a1          32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRY   64 (72)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999875