Citrus Sinensis ID: 024137

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
Protein Sequence
MNWNAPINSWWRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKVILLFANCYLLIRFPLD
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccc
Coil and Loop (DISEMBL)
mnwnapinswwRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIAdlgvdapvtQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNflvnkayqfssitsvtlLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLlsdaggdggggsrpllGDVLVIAGTIFFatsnvgeeffvkkkdRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKVILLFANCYLLIRFPLD
Flexible Loop (DISEMBL)
mnwnapinswwRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFatsnvgeeffvkkkdrVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKVILLFANCYLLIRFPLD
Low Complexity Region (SEG)
MNWNAPINSWWRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQllgaalcvlglglvllsdaggdggggsrpllgdvLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKVILLFANCYLLIRFPLD
Disordered region (IsUnstruct)
***NAPINSWWRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKVILLFANCYLLIRF***
Disordered Region (DISOPRED)
*********WWRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA******GSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKVILLFANCYLLIRFPL*
Disordered Region (DISEMBL)
MNWNAPINSWWRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKVILLFANCYLLIRFPLD
Disordered Region (DISPRO)
MNWNAPINSWWRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKVILLFANCYLLIRFPLD
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNWNAPINSWWRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKVILLFANCYLLIRFPLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	272	2.2.26 [Sep-21-2011]
Q5T1Q4	408	Solute carrier family 35	yes	no	0.849	0.566	0.383	8e-39
Q8IXU6	374	Solute carrier family 35	no	no	0.852	0.620	0.373	2e-38
Q8BGK5	408	Solute carrier family 35	yes	no	0.849	0.566	0.387	2e-38
Q7TML3	375	Solute carrier family 35	no	no	0.900	0.653	0.366	2e-37
Q0V9U2	391	Solute carrier family 35	no	no	0.849	0.590	0.356	2e-34
O59785	505	Uncharacterized solute ca	yes	no	0.856	0.461	0.292	5e-22

>sp|Q5T1Q4|S35F1_HUMAN Solute carrier family 35 member F1 OS=Homo sapiens GN=SLC35F1 PE=2 SV=2

 Score =  160 bits (405), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 92/240 (38%), Positives = 137/240 (57%), Gaps = 9/240 (3%)

Query: 25  LGQLVSFTLALMSFTSS-LIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR------L 77
           LGQ++S  +  +  TS  L  D   + PV QS   Y  L LVY   L  R+        L
Sbjct: 66  LGQVLSLLICGIGLTSKYLSEDFHANTPVFQSFLNYILLFLVYTTTLAVRQGEENLLAIL 125

Query: 78  RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQ 137
           R  W+ Y++LG +D++ N+LV KAYQ++++TS+ LLDC  I   I+L+W FL  RY    
Sbjct: 126 RRRWWKYMILGLIDLEANYLVVKAYQYTTLTSIQLLDCFVIPVVILLSWFFLLIRYKAVH 185

Query: 138 LLGAALCVLGLGLVLLSD--AGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKD 195
            +G  +C+LG+G ++ +D   G   G G   L+GD+LV+ G   +  SNV EE+ ++   
Sbjct: 186 FIGIVVCILGMGCMVGADVLVGRHQGAGENKLVGDLLVLGGATLYGISNVWEEYIIRTLS 245

Query: 196 RVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLK 255
           RVE + MIG++G   S +QL+I+E K L  V W   I L + G++A  F  Y+  P V+K
Sbjct: 246 RVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGFSACMFGLYSFMPVVIK 305

Putative solute transporter.
Homo sapiens (taxid: 9606)

>sp|Q8IXU6|S35F2_HUMAN Solute carrier family 35 member F2 OS=Homo sapiens GN=SLC35F2 PE=1 SV=1

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/241 (37%), Positives = 142/241 (58%), Gaps = 9/241 (3%)

Query: 25  LGQLVSFTLALMSFTSSLIAD-LGVDAPVTQSAFAYFSLALVYGGVLLYRRQR------L 77
           LGQ++S  +   + TS  +A+   V+ P+ QS   Y  L L+Y  +L +R         L
Sbjct: 45  LGQMLSLCICGTAITSQYLAERYKVNTPMLQSFINYCLLFLIYTVMLAFRSGSDNLLVIL 104

Query: 78  RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQ 137
           +  W+ Y+LLG  DV+ N+++ +AYQ++++TSV LLDC  I   + L+W  L  RY +  
Sbjct: 105 KRKWWKYILLGLADVEANYVIVRAYQYTTLTSVQLLDCFGIPVLMALSWFILHARYRVIH 164

Query: 138 LLGAALCVLGLGLVLLSD--AGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKD 195
            +  A+C+LG+G ++ +D  AG +   GS  L+GD+LV+ G   +A SNV EE+ VKK  
Sbjct: 165 FIAVAVCLLGVGTMVGADILAGREDNSGSDVLIGDILVLLGASLYAISNVCEEYIVKKLS 224

Query: 196 RVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLK 255
           R E + M+G++G ++S +QL I+E K + S+ W   I L F  +A   F  Y+  P V+K
Sbjct: 225 RQEFLGMVGLFGTIISGIQLLIVEYKDIASIHWDWKIALLFVAFALCMFCLYSFMPLVIK 284

Query: 256 V 256
           V
Sbjct: 285 V 285

Putative solute transporter.

Homo sapiens (taxid: 9606)

>sp|Q8BGK5|S35F1_MOUSE Solute carrier family 35 member F1 OS=Mus musculus GN=Slc35f1 PE=2 SV=1

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/240 (38%), Positives = 137/240 (57%), Gaps = 9/240 (3%)

Query: 25  LGQLVSFTLALMSFTSSLIA-DLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR------L 77
           LGQ++S  +  +  TS  +A D   + PV QS   Y  L LVY   L  R+        L
Sbjct: 66  LGQVLSLLVCGIGLTSKYLAEDFHANTPVFQSFLNYILLFLVYTTTLAVRQGEENLLAIL 125

Query: 78  RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQ 137
           R  W+ Y++LG +D++ N+LV KAYQ++++TSV LLDC  I   I+L+W FL  RY    
Sbjct: 126 RRRWWKYMILGLIDLEANYLVVKAYQYTTLTSVQLLDCFVIPVVILLSWFFLLIRYKAVH 185

Query: 138 LLGAALCVLGLGLVLLSD--AGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKD 195
            +G  +C+LG+G ++ +D   G   G G   L+GD+LV+ G   +  SNV EE  ++   
Sbjct: 186 FIGIVVCILGMGCMVGADVLVGRHQGAGENKLVGDLLVLGGATLYGISNVWEESIIRTLS 245

Query: 196 RVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLK 255
           RVE + MIG++G   S +QL+I+E K L  V W   I L + G++A  F  Y+  P V+K
Sbjct: 246 RVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGFSACMFGLYSFMPVVIK 305

Putative solute transporter.

Mus musculus (taxid: 10090)

>sp|Q7TML3|S35F2_MOUSE Solute carrier family 35 member F2 OS=Mus musculus GN=Slc35f2 PE=2 SV=2

 Score =  156 bits (394), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/254 (36%), Positives = 145/254 (57%), Gaps = 9/254 (3%)

Query: 12  RSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIAD-LGVDAPVTQSAFAYFSLALVYGGVL 70
           R   T   L  + LGQ++S  +   + TS  +A+   V+ P+ QS   Y  L LVY  +L
Sbjct: 32  RKLFTWDILKTIALGQMLSLCICGTAITSQYLAEKYRVNTPMLQSFINYCLLFLVYTLML 91

Query: 71  LYRR------QRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVL 124
            ++       + LR  W+ Y LLG  DV+ N+L+ +AYQ++++TSV LLDC  I   + L
Sbjct: 92  AFQSGSDNLLEILRRKWWKYTLLGLADVEANYLIVRAYQYTTLTSVQLLDCFGIPVLMAL 151

Query: 125 TWLFLGTRYSLWQLLGAALCVLGLGLVLLSD--AGGDGGGGSRPLLGDVLVIAGTIFFAT 182
           +W  L  RY +   +   +C+LG+G ++ +D  AG +   GS  L+GD+LV+ G   +A 
Sbjct: 152 SWFILRARYKVIHFIAVFVCLLGVGTMVGADILAGREDNSGSDVLIGDILVLLGASLYAV 211

Query: 183 SNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAAS 242
           SNV EE+ VKK  R E + M+G++G ++S +QL I+E K +  ++W   I L F  +A  
Sbjct: 212 SNVCEEYIVKKLSRQEFLGMVGLFGTIISGIQLLIVEYKDIARIQWDWKIALLFVAFALC 271

Query: 243 SFMFYTLAPFVLKV 256
            F  Y+  P V+KV
Sbjct: 272 MFCLYSFMPLVIKV 285

Putative solute transporter.

Mus musculus (taxid: 10090)

>sp|Q0V9U2|S35F2_XENTR Solute carrier family 35 member F2 OS=Xenopus tropicalis GN=slc35f2 PE=2 SV=2

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/244 (35%), Positives = 133/244 (54%), Gaps = 13/244 (5%)

Query: 25  LGQLVSFTLALMSFTSS-LIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR------L 77
           LGQ++S  +  +  TS  L  D   + P+ QS   Y  L LVY   L  R+        L
Sbjct: 45  LGQVLSLLICGIRLTSKYLSEDFHANTPLFQSFLNYILLFLVYTTTLAVRQGEENLLAIL 104

Query: 78  RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQ 137
           +  W+ Y+ LG +D++  +LV KA+Q+++  S+ LL+C  I   I+L+W FL  RY +  
Sbjct: 105 KRRWWKYMFLGIIDIEATYLVVKAHQYTTFISIQLLNCFVIPVVILLSWFFLLVRYKVLH 164

Query: 138 LLGAALCVLGLGLVLLSD------AGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFV 191
            +GA  C+LG+G +  +D        GD   G   L+GDVLV+ G   +  S+V +E+ V
Sbjct: 165 FIGAIACILGIGCMAGADVLMGRQQKGDFYPGDSKLIGDVLVLGGATLYGISSVCQEYIV 224

Query: 192 KKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAP 251
           +   RVE++ MIG++G   S +QL+I+E K L  V W   I L + G+ A  F  Y+  P
Sbjct: 225 RNLSRVELLGMIGLFGSFFSGIQLAIMEHKELLKVPWDWQIGLLYVGFTACMFGLYSFMP 284

Query: 252 FVLK 255
            V+K
Sbjct: 285 VVIK 288

Putative solute transporter.

Xenopus tropicalis (taxid: 8364)

>sp|O59785|YCN8_SCHPO Uncharacterized solute carrier family 35 member C320.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC320.08 PE=1 SV=1

 Score =  105 bits (261), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 10/243 (4%)

Query: 22  LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYR-------R 74
           + FLGQ++S  +   +  +  ++ +  + P  Q+   Y  L LVY    ++R        
Sbjct: 144 VFFLGQVLSLCITATNTFNGYMSGIS-NIPAFQTFLVYALLTLVYTPYTVFRMGFKKYFE 202

Query: 75  QRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYS 134
              R  W  Y++  F DV+GN+ V  AYQ++++ S +LLD       ++L+++FL  RY 
Sbjct: 203 MIFRHGWK-YIIFAFFDVEGNYFVVLAYQYTNMLSASLLDSWATVAVVILSFIFLKVRYH 261

Query: 135 LWQLLGAALCVLGLGLVLLSDAGGDGG-GGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK 193
             Q+LG   C+ GL L+++SD    G      P LGD  +I G   +  SN  EE+F  K
Sbjct: 262 WSQILGVVACIGGLVLLVVSDVISRGDYSAVNPGLGDGYMIIGATCYGVSNTLEEYFASK 321

Query: 194 KDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFV 253
                V+  + +YG ++S +Q  I +   L ++ W++ +    AG+    F+ Y+LAP +
Sbjct: 322 LPLYVVIGQLSLYGSIISIIQTFIFDRHHLYTLHWTSEMGGYLAGFILVMFLLYSLAPIL 381

Query: 254 LKV 256
            ++
Sbjct: 382 FRM 384

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
297740093	337	unnamed protein product [Vitis vinifera]	0.919	0.741	0.764	1e-107
359481996	352	PREDICTED: solute carrier family 35 memb	0.919	0.710	0.754	1e-106
297740094	337	unnamed protein product [Vitis vinifera]	0.919	0.741	0.709	2e-97
359481998	673	PREDICTED: solute carrier family 35 memb	0.930	0.375	0.700	3e-97
255575633	340	conserved hypothetical protein [Ricinus	0.937	0.75	0.755	6e-92
357511003	363	Solute carrier family 35 member F1 [Medi	0.937	0.702	0.683	8e-85
357511005	349	Solute carrier family 35 member F2 [Medi	0.933	0.727	0.675	9e-83
224134462	267	predicted protein [Populus trichocarpa]	0.768	0.782	0.771	4e-81
297740095	356	unnamed protein product [Vitis vinifera]	0.930	0.710	0.620	7e-79
242088093	347	hypothetical protein SORBIDRAFT_09g02187	0.834	0.654	0.646	3e-75

>gi|297740093|emb|CBI30275.3| unnamed protein product [Vitis vinifera]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/251 (76%), Positives = 225/251 (89%), Gaps = 1/251 (0%)

Query: 7   INSWWRSH-VTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALV 65
           ++SWWRSH + LRTLY+LFLGQ+VSF LA+ SF+SS IADLGVDAP+TQS F Y SLALV
Sbjct: 1   MSSWWRSHGILLRTLYVLFLGQVVSFVLAVASFSSSFIADLGVDAPLTQSFFTYLSLALV 60

Query: 66  YGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLT 125
           YG +LLYRRQ+LR++WYWYL LGFVDVQGN+LVNKAYQ+SSITSVTLLDC TI W I+LT
Sbjct: 61  YGSILLYRRQKLRISWYWYLFLGFVDVQGNYLVNKAYQYSSITSVTLLDCWTIPWVIILT 120

Query: 126 WLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNV 185
           W+FLGTRYSLWQ  GAALC++GLGLVLLSDAG  GG GSRPLLGD+LVIAGT+FFA SNV
Sbjct: 121 WIFLGTRYSLWQFFGAALCIVGLGLVLLSDAGVGGGDGSRPLLGDILVIAGTLFFALSNV 180

Query: 186 GEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFM 245
           GEEF VKKKDRVEVV MIG++GLLVS  ++SI+ELKSLESVEWST+I+LGF GYA S+F+
Sbjct: 181 GEEFCVKKKDRVEVVTMIGIFGLLVSVCEISIMELKSLESVEWSTDIILGFVGYAVSTFL 240

Query: 246 FYTLAPFVLKV 256
           FYT+ PF+L++
Sbjct: 241 FYTIVPFLLQI 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481996|ref|XP_002276979.2| PREDICTED: solute carrier family 35 member F1-like [Vitis vinifera]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/253 (75%), Positives = 225/253 (88%), Gaps = 3/253 (1%)

Query: 5   APINSWWRSH-VTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLA 63
           A +++WWRSH + LRTLY+LFLGQ+VSF LA+ SF+SS IADLGVDAP+TQS F Y SLA
Sbjct: 16  ADLDAWWRSHGILLRTLYVLFLGQVVSFVLAVASFSSSFIADLGVDAPLTQSFFTYLSLA 75

Query: 64  LVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIV 123
           LVYG +LLYRRQ+LR++WYWYL LGFVDVQGN+LVNKAYQ+SSITSVTLLDC TI W I+
Sbjct: 76  LVYGSILLYRRQKLRISWYWYLFLGFVDVQGNYLVNKAYQYSSITSVTLLDCWTIPWVII 135

Query: 124 LTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATS 183
           LTW+FLGTRYSLWQ  GAALC++GLGLVLLSDAG   G GSRPLLGD+LVIAGT+FFA S
Sbjct: 136 LTWIFLGTRYSLWQFFGAALCIVGLGLVLLSDAG--VGDGSRPLLGDILVIAGTLFFALS 193

Query: 184 NVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASS 243
           NVGEEF VKKKDRVEVV MIG++GLLVS  ++SI+ELKSLESVEWST+I+LGF GYA S+
Sbjct: 194 NVGEEFCVKKKDRVEVVTMIGIFGLLVSVCEISIMELKSLESVEWSTDIILGFVGYAVST 253

Query: 244 FMFYTLAPFVLKV 256
           F+FYT+ PF+L++
Sbjct: 254 FLFYTIVPFLLQI 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740094|emb|CBI30276.3| unnamed protein product [Vitis vinifera]

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 178/251 (70%), Positives = 213/251 (84%), Gaps = 1/251 (0%)

Query: 7   INSWWR-SHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALV 65
           +NSWWR +  +LRTL++L LGQ+VSF LA+  FTSS IADLGVDAP+TQS F Y  LALV
Sbjct: 1   MNSWWRCNEASLRTLHVLLLGQVVSFVLAVSGFTSSFIADLGVDAPLTQSFFTYLCLALV 60

Query: 66  YGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLT 125
            G +LLYRRQRL+V+WYWYL LGF+DVQGN+LVNKA+Q+SS+TSV LLDC TI W I+LT
Sbjct: 61  NGSILLYRRQRLQVSWYWYLFLGFIDVQGNYLVNKAFQYSSLTSVALLDCWTIPWVIILT 120

Query: 126 WLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNV 185
           W+FLGTRYS+WQ  GAALCV GLGLVLLSDAG  G GGSRPLLGD LVIAGT+  A SNV
Sbjct: 121 WIFLGTRYSIWQFFGAALCVAGLGLVLLSDAGVGGEGGSRPLLGDTLVIAGTLCIAMSNV 180

Query: 186 GEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFM 245
           GEEF VKKKDRVE++ M+G++GLLVS  ++SI+ELKSLES+EWST I+L F G+A S+F+
Sbjct: 181 GEEFCVKKKDRVELMSMLGLFGLLVSVCEISIVELKSLESIEWSTKIVLAFVGFALSNFL 240

Query: 246 FYTLAPFVLKV 256
           FYTL PF+LK+
Sbjct: 241 FYTLVPFLLKI 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481998|ref|XP_003632702.1| PREDICTED: solute carrier family 35 member F1-like [Vitis vinifera]

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 178/254 (70%), Positives = 213/254 (83%), Gaps = 1/254 (0%)

Query: 4   NAPINSWWR-SHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSL 62
              +NSWWR +  +LRTL++L LGQ+VSF LA+  FTSS IADLGVDAP+TQS F Y  L
Sbjct: 334 ECAMNSWWRCNEASLRTLHVLLLGQVVSFVLAVSGFTSSFIADLGVDAPLTQSFFTYLCL 393

Query: 63  ALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAI 122
           ALV G +LLYRRQRL+V+WYWYL LGF+DVQGN+LVNKA+Q+SS+TSV LLDC TI W I
Sbjct: 394 ALVNGSILLYRRQRLQVSWYWYLFLGFIDVQGNYLVNKAFQYSSLTSVALLDCWTIPWVI 453

Query: 123 VLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFAT 182
           +LTW+FLGTRYS+WQ  GAALCV GLGLVLLSDAG  G GGSRPLLGD LVIAGT+  A 
Sbjct: 454 ILTWIFLGTRYSIWQFFGAALCVAGLGLVLLSDAGVGGEGGSRPLLGDTLVIAGTLCIAM 513

Query: 183 SNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAAS 242
           SNVGEEF VKKKDRVE++ M+G++GLLVS  ++SI+ELKSLES+EWST I+L F G+A S
Sbjct: 514 SNVGEEFCVKKKDRVELMSMLGLFGLLVSVCEISIVELKSLESIEWSTKIVLAFVGFALS 573

Query: 243 SFMFYTLAPFVLKV 256
           +F+FYTL PF+LK+
Sbjct: 574 NFLFYTLVPFLLKI 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575633|ref|XP_002528716.1| conserved hypothetical protein [Ricinus communis] gi|223531810|gb|EEF33628.1| conserved hypothetical protein [Ricinus communis]

 Score =  343 bits (879), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 195/258 (75%), Positives = 225/258 (87%), Gaps = 3/258 (1%)

Query: 1   MNWNAPINS--WWRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFA 58
           MNW    NS  WW+SH TL+ LYLL LGQ+VSF LA+ S TSSL+ DLG+DAP+TQS+F 
Sbjct: 1   MNWYGN-NSCRWWKSHATLKILYLLLLGQVVSFILAVCSLTSSLVVDLGIDAPITQSSFN 59

Query: 59  YFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTI 118
           YF+LALV+G +LLYRRQ+LRV+WYWYLLLGFVDVQGN+LVN+AYQ++SITSVTLLDC TI
Sbjct: 60  YFALALVFGSILLYRRQKLRVSWYWYLLLGFVDVQGNYLVNRAYQYTSITSVTLLDCWTI 119

Query: 119 AWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTI 178
            WAIVLTW FLGTRYS+WQL GAALCVLGLGLVLLSDAG  GGGGSRPLLGD+LVIAGTI
Sbjct: 120 VWAIVLTWFFLGTRYSIWQLFGAALCVLGLGLVLLSDAGVGGGGGSRPLLGDLLVIAGTI 179

Query: 179 FFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAG 238
           FFA SNVGEEFFVK KDRVEVV M+G++GLLVS VQLS+LELK+L+S+ W+ +I+L  AG
Sbjct: 180 FFALSNVGEEFFVKNKDRVEVVAMLGIFGLLVSVVQLSVLELKTLKSINWTADIILAIAG 239

Query: 239 YAASSFMFYTLAPFVLKV 256
           Y  S FMFYTL PFVLK+
Sbjct: 240 YTLSMFMFYTLTPFVLKL 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511003|ref|XP_003625790.1| Solute carrier family 35 member F1 [Medicago truncatula] gi|355500805|gb|AES82008.1| Solute carrier family 35 member F1 [Medicago truncatula]

 Score =  319 bits (818), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 177/259 (68%), Positives = 212/259 (81%), Gaps = 4/259 (1%)

Query: 1   MNWNAPINSWWRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYF 60
           M+W   I++WW    TL+ L +L LGQLVSF LALMS TSSLIA  GVDAP+TQS F Y 
Sbjct: 1   MDWTT-ISTWWSRTATLQILGILLLGQLVSFLLALMSITSSLIAQFGVDAPLTQSLFTYG 59

Query: 61  SLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAW 120
           SLALVYG +LLYR Q+  V+WYWYLLLGF D QG +LV KAYQ++S+TSVTLLDC T+ W
Sbjct: 60  SLALVYGSILLYRHQKPLVSWYWYLLLGFADAQGCYLVIKAYQYTSVTSVTLLDCWTVPW 119

Query: 121 AIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA---GGDGGGGSRPLLGDVLVIAGT 177
           AI+LTW+FLGTRYSLWQL G  LCVLGL LVL SD    GG GGGGS+P+LGDVLVI GT
Sbjct: 120 AILLTWIFLGTRYSLWQLCGGTLCVLGLSLVLFSDTWDGGGGGGGGSKPVLGDVLVIVGT 179

Query: 178 IFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFA 237
           +F+A SNV EEF VKKKDRVE V M+GVYG LV+A+++S+LELK+L+S++WS++I+L FA
Sbjct: 180 VFYAISNVVEEFCVKKKDRVETVTMLGVYGFLVTAIEVSVLELKTLKSIKWSSDIVLAFA 239

Query: 238 GYAASSFMFYTLAPFVLKV 256
           GY  SSFMFY+LAPFVLK+
Sbjct: 240 GYGVSSFMFYSLAPFVLKL 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511005|ref|XP_003625791.1| Solute carrier family 35 member F2 [Medicago truncatula] gi|355500806|gb|AES82009.1| Solute carrier family 35 member F2 [Medicago truncatula]

 Score =  312 bits (800), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 175/259 (67%), Positives = 209/259 (80%), Gaps = 5/259 (1%)

Query: 1   MNWNAPINSWWRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYF 60
           M+W   I++WW    TL+ L +L LGQLVSF LALMS TSSLIA  GVDAP+TQS F Y 
Sbjct: 1   MDWTT-ISTWWSRTATLQILGILLLGQLVSFLLALMSITSSLIAQFGVDAPLTQSLFTYG 59

Query: 61  SLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAW 120
           SLALVYG +LLYR Q+  V+WYWYLLLGF D QG +LV KAYQ++S+TSVTLLDC T+ W
Sbjct: 60  SLALVYGSILLYRHQKPLVSWYWYLLLGFADAQGCYLVIKAYQYTSVTSVTLLDCWTVPW 119

Query: 121 AIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA----GGDGGGGSRPLLGDVLVIAG 176
           AI+LTW+FLGTRYSLWQL G  LCVLGL LVL SD     GG GGGGS+P+LGDVLVI G
Sbjct: 120 AILLTWIFLGTRYSLWQLCGGTLCVLGLSLVLFSDTWDGGGGGGGGGSKPILGDVLVIVG 179

Query: 177 TIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGF 236
           T+FFA SNV EEF VKKKDRVE V M+GVYG LV+A+++S+LELK+L+S++WS +I+L F
Sbjct: 180 TVFFAVSNVVEEFCVKKKDRVEAVTMLGVYGFLVTAIEVSVLELKTLKSIKWSGDIVLAF 239

Query: 237 AGYAASSFMFYTLAPFVLK 255
           AGY  SSF++ +LAPFVLK
Sbjct: 240 AGYGVSSFIYCSLAPFVLK 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134462|ref|XP_002327411.1| predicted protein [Populus trichocarpa] gi|222835965|gb|EEE74386.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 162/210 (77%), Positives = 183/210 (87%), Gaps = 1/210 (0%)

Query: 47  GVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSS 106
           GVDAP+TQS+F Y +LAL+YG +LLYRRQ+L+V+WYWYLLLGFVDVQGN+LVNKAYQFSS
Sbjct: 1   GVDAPLTQSSFNYLALALIYGSILLYRRQKLQVSWYWYLLLGFVDVQGNYLVNKAYQFSS 60

Query: 107 ITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAG-GDGGGGSR 165
           ITSVTLLDC T+AW I LTW FLGTRY+LWQLLGAA+CVLGLGLVLLSDAG     GGS+
Sbjct: 61  ITSVTLLDCWTVAWVIALTWFFLGTRYTLWQLLGAAVCVLGLGLVLLSDAGVAHITGGSK 120

Query: 166 PLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLES 225
           P+LGD LVI GTIFFA SNVGEEF VKKK RVEVV MIGVYG LVSAV+LSI+ELKSLE+
Sbjct: 121 PVLGDFLVITGTIFFALSNVGEEFCVKKKGRVEVVTMIGVYGFLVSAVELSIVELKSLEA 180

Query: 226 VEWSTNILLGFAGYAASSFMFYTLAPFVLK 255
           V WS +I+   AGY  S F+FY+LAPFVLK
Sbjct: 181 VAWSKDIVFAIAGYTLSMFLFYSLAPFVLK 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740095|emb|CBI30277.3| unnamed protein product [Vitis vinifera]

 Score =  299 bits (766), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 157/253 (62%), Positives = 195/253 (77%)

Query: 4   NAPINSWWRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLA 63
           N  +  W R+   LR  Y LFLGQ+VSF +A  SF +S + DLGV+ P+TQS FAY  L 
Sbjct: 20  NEFVLRWIRNERLLRNAYALFLGQVVSFLVAFSSFFTSSVIDLGVNVPLTQSFFAYLCLV 79

Query: 64  LVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIV 123
           LV+G + L RRQ +RV+W WYL LGFVDVQGN+LV KAYQ+SS TSVTLLDC TI WA++
Sbjct: 80  LVFGTIRLGRRQNIRVSWIWYLFLGFVDVQGNYLVKKAYQYSSATSVTLLDCWTIPWAMI 139

Query: 124 LTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATS 183
            TW+ LGTRYS+ Q  GAALCV GL  V LSDAG  GGGGS+P+LGD LV+AGT+F A S
Sbjct: 140 FTWIVLGTRYSIRQFFGAALCVAGLASVFLSDAGAGGGGGSKPILGDTLVVAGTLFLAMS 199

Query: 184 NVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASS 243
           NVGEEF VKKKD VEVV MIG +GLLVSA ++ I+E ++L+S++WS +I+LG AG+  S+
Sbjct: 200 NVGEEFCVKKKDSVEVVAMIGAFGLLVSACEIYIMEFETLKSIKWSPDIILGLAGHVLST 259

Query: 244 FMFYTLAPFVLKV 256
           F+FYTL PF+LK+
Sbjct: 260 FLFYTLVPFLLKL 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242088093|ref|XP_002439879.1| hypothetical protein SORBIDRAFT_09g021870 [Sorghum bicolor] gi|241945164|gb|EES18309.1| hypothetical protein SORBIDRAFT_09g021870 [Sorghum bicolor]

 Score =  287 bits (735), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 148/229 (64%), Positives = 178/229 (77%), Gaps = 2/229 (0%)

Query: 30  SFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGF 89
           +F +A  SFTSSLIA+LGVDAP+TQS FAY  L LVY  ++L RRQ+L++AWYWYL L F
Sbjct: 21  AFAMAASSFTSSLIANLGVDAPLTQSFFAYLLLTLVYVPIVLRRRQKLQIAWYWYLALAF 80

Query: 90  VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLG 149
            DVQGN+LV KAYQ+S ITSVTLLDC T+ W I+LTW  LGTRYSLWQ +GA  CV GL 
Sbjct: 81  FDVQGNYLVVKAYQYSYITSVTLLDCWTVVWVIILTWYALGTRYSLWQFVGAGTCVAGLA 140

Query: 150 LVLLSDAGG--DGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYG 207
           LVLLSDA    +   G  PLLGDVLVIAGT+ FA SNVGEE+ VKKKDRVEVV M+G++G
Sbjct: 141 LVLLSDAESPEEQDPGKMPLLGDVLVIAGTVGFAFSNVGEEYCVKKKDRVEVVAMLGLFG 200

Query: 208 LLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKV 256
           LL+S VQ+ I E K LE+V WS  ++  FAG+A + F+FYT+ PFVLK+
Sbjct: 201 LLISIVQILIFERKGLEAVTWSPTMISLFAGFAVAIFIFYTITPFVLKM 249

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
TAIR|locus:2081212	339	AT3G59320 "AT3G59320" [Arabido	0.882	0.707	0.402	6.4e-44
TAIR|locus:2081262	333	AT3G59340 "AT3G59340" [Arabido	0.882	0.720	0.394	8.1e-44
TAIR|locus:2081197	363	AT3G59310 "AT3G59310" [Arabido	0.937	0.702	0.382	2.8e-41
WB|WBGene00022270	429	Y73E7A.3 [Caenorhabditis elega	0.426	0.270	0.393	1.5e-32
UNIPROTKB|Q8IXU6	374	SLC35F2 "Solute carrier family	0.433	0.315	0.352	3.2e-31
MGI|MGI:1919272	375	Slc35f2 "solute carrier family	0.455	0.330	0.358	4e-31
UNIPROTKB|Q5T1Q4	408	SLC35F1 "Solute carrier family	0.400	0.267	0.396	5e-31
MGI|MGI:2139810	408	Slc35f1 "solute carrier family	0.400	0.267	0.413	7.6e-31
DICTYBASE|DDB_G0287003	417	DDB_G0287003 "solute carrier f	0.408	0.266	0.405	6.2e-29
ASPGD|ASPL0000029133	399	AN5236 [Emericella nidulans (t	0.422	0.288	0.272	1e-18

TAIR|locus:2081212 AT3G59320 "AT3G59320" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 97/241 (40%), Positives = 140/241 (58%)

Query:    16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ 75
             T +TL  L LGQ++S    L++  +S IA  G+ AP +Q+   Y SLA+VYGG++LYRR 
Sbjct:    11 TKKTLIGLGLGQIISLLSTLIASIASEIARKGISAPTSQTFLGYVSLAIVYGGIMLYRRS 70

Query:    76 RLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSL 135
              ++V WY Y LL  VDV+ NFLV KA+Q +S+TS+ LLDC  I   +VLTW+FL TRY L
Sbjct:    71 AIKVKWYHYFLLAVVDVEANFLVVKAFQNTSMTSIMLLDCWAIPCVLVLTWVFLKTRYRL 130

Query:   136 WQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXLVIAGTIFFATSNVGEEFFVKKK 194
              +                                   LVIAG   +A SNV EEF VK  
Sbjct:   131 MKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVTEEFLVKNA 190

Query:   195 DRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVL 254
             D  E++  +G++G +++A+Q+SI E  ++ +++WST  +L + G A   F+FYTL   ++
Sbjct:   191 DVTELMAFLGLFGAIIAAIQISIFERGAVRAIQWSTEAILLYIGGALGLFLFYTLITILI 250

Query:   255 K 255
             K
Sbjct:   251 K 251

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2081262 AT3G59340 "AT3G59340" [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 95/241 (39%), Positives = 141/241 (58%)

Query:    16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ 75
             T +TL  L LGQ++S      +FTSS +A  G++AP +Q+  +Y  LA+VYGG++LYRR 
Sbjct:    13 TKKTLIGLGLGQILSLLCTSNAFTSSELARKGINAPTSQTFLSYTLLAVVYGGIMLYRRP 72

Query:    76 RLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSL 135
              ++  WY Y LL  VDV+GNFLV KA Q++SITS+ LLDC  I   +VLTW+FL T+Y L
Sbjct:    73 TIKGKWYHYFLLALVDVEGNFLVVKANQYTSITSIMLLDCWAIPCVLVLTWMFLKTKYRL 132

Query:   136 WQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXLVIAGTIFFATSNVGEEFFVKKK 194
              +                                   LV+AG   +A SN  EEF VK  
Sbjct:   133 MKISGVFICIAGVVMVLFSDVHAGSRAGGSNPVKGDFLVLAGATLYAVSNTTEEFLVKNA 192

Query:   195 DRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVL 254
             D VE++  +G++G ++SA+Q++I E   L+++ WS + +  F  +A + F+FY+L P +L
Sbjct:   193 DTVELMTFMGLFGAIISAIQVAIFEQGELKAIHWSADAVFPFLRFAITMFLFYSLLPILL 252

Query:   255 K 255
             +
Sbjct:   253 R 253

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081197 AT3G59310 "AT3G59310" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 99/259 (38%), Positives = 138/259 (53%)

Query:    16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ 75
             T +TL  L LGQL+S       FTSS +A  G++ P +Q    Y  LA+VYG ++LYRR 
Sbjct:    10 TKKTLIGLGLGQLLSLLATSNGFTSSELARKGINVPTSQCFLNYVLLAIVYGSIMLYRRS 69

Query:    76 RLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSL 135
              ++  WY+Y LL FVDV+ NFLV KAYQ++S+TSV LLDC  I   +VLTW +L T+Y L
Sbjct:    70 DIKAKWYYYFLLAFVDVEANFLVVKAYQYTSLTSVMLLDCWAIPCVLVLTWFYLKTKYRL 129

Query:   136 WQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXLVIAGTIFFATSNVGEEFFVKKK 194
              +                                   LV+AG   +A SN  EEF VK  
Sbjct:   130 MKISGVFICIVGVFMVVFSDVHAGDRAGGSNPVKGDFLVLAGATLYAVSNTSEEFLVKNA 189

Query:   195 DRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVL 254
             D VE++  +G +G ++SA+Q+SILE   L+++ WST  + GF   A S          +L
Sbjct:   190 DTVELMTFLGFFGAIISAIQVSILERDELKAIHWSTGAV-GFLAMAISILTSANQRRHIL 248

Query:   255 KVILLFAN--CYLLIRFPL 271
               +L F+    +  +RF L
Sbjct:   249 VYLLHFSRFQVFPFLRFTL 267

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00022270 Y73E7A.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 215 (80.7 bits), Expect = 1.5e-32, Sum P(2) = 1.5e-32
 Identities = 48/122 (39%), Positives = 69/122 (56%)

Query:    18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR- 76
             RT   L LGQ++S  L     +S L+ +  V+AP  Q+   YF L  VY   L  +    
Sbjct:    59 RTFKALILGQILSLCLCGTGVSSQLLVNQNVNAPAAQAFSNYFLLCFVYCISLACKNDEN 118

Query:    77 -----LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGT 131
                  LR   + YL+L  +DV+ N+++ KAYQ++++TSV LLDC TI   + L+WLFL  
Sbjct:   119 GLVVVLRKRGWRYLILAIIDVEANYMIVKAYQYTNLTSVQLLDCATIPTVLFLSWLFLSV 178

Query:   132 RY 133
             RY
Sbjct:   179 RY 180

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8IXU6 SLC35F2 "Solute carrier family 35 member F2" [Homo sapiens (taxid:9606)]

 Score = 189 (71.6 bits), Expect = 3.2e-31, Sum P(2) = 3.2e-31
 Identities = 44/125 (35%), Positives = 70/125 (56%)

Query:    16 TLRTLYLLFLGQLVSFTLALMSFTSSLIAD-LGVDAPVTQSAFAYFSLALVYGGVLLYRR 74
             T   L  + LGQ++S  +   + TS  +A+   V+ P+ QS   Y  L L+Y  +L +R 
Sbjct:    36 TWNILKTIALGQMLSLCICGTAITSQYLAERYKVNTPMLQSFINYCLLFLIYTVMLAFRS 95

Query:    75 QR------LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLF 128
                     L+  W+ Y+LLG  DV+ N+++ +AYQ++++TSV LLDC  I   + L+W  
Sbjct:    96 GSDNLLVILKRKWWKYILLGLADVEANYVIVRAYQYTTLTSVQLLDCFGIPVLMALSWFI 155

Query:   129 LGTRY 133
             L  RY
Sbjct:   156 LHARY 160

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1919272 Slc35f2 "solute carrier family 35, member F2" [Mus musculus (taxid:10090)]

 Score = 190 (71.9 bits), Expect = 4.0e-31, Sum P(2) = 4.0e-31
 Identities = 47/131 (35%), Positives = 72/131 (54%)

Query:    12 RSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIAD-LGVDAPVTQSAFAYFSLALVYGGVL 70
             R   T   L  + LGQ++S  +   + TS  +A+   V+ P+ QS   Y  L LVY  +L
Sbjct:    32 RKLFTWDILKTIALGQMLSLCICGTAITSQYLAEKYRVNTPMLQSFINYCLLFLVYTLML 91

Query:    71 LYRR------QRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVL 124
              ++       + LR  W+ Y LLG  DV+ N+L+ +AYQ++++TSV LLDC  I   + L
Sbjct:    92 AFQSGSDNLLEILRRKWWKYTLLGLADVEANYLIVRAYQYTTLTSVQLLDCFGIPVLMAL 151

Query:   125 TWLFLGTRYSL 135
             +W  L  RY +
Sbjct:   152 SWFILRARYKV 162

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5T1Q4 SLC35F1 "Solute carrier family 35 member F1" [Homo sapiens (taxid:9606)]

 Score = 205 (77.2 bits), Expect = 5.0e-31, Sum P(2) = 5.0e-31
 Identities = 46/116 (39%), Positives = 68/116 (58%)

Query:    25 LGQLVSFTLALMSFTSSLIA-DLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR------L 77
             LGQ++S  +  +  TS  ++ D   + PV QS   Y  L LVY   L  R+        L
Sbjct:    66 LGQVLSLLICGIGLTSKYLSEDFHANTPVFQSFLNYILLFLVYTTTLAVRQGEENLLAIL 125

Query:    78 RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRY 133
             R  W+ Y++LG +D++ N+LV KAYQ++++TS+ LLDC  I   I+L+W FL  RY
Sbjct:   126 RRRWWKYMILGLIDLEANYLVVKAYQYTTLTSIQLLDCFVIPVVILLSWFFLLIRY 181

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:2139810 Slc35f1 "solute carrier family 35, member F1" [Mus musculus (taxid:10090)]

 Score = 208 (78.3 bits), Expect = 7.6e-31, Sum P(2) = 7.6e-31
 Identities = 48/116 (41%), Positives = 68/116 (58%)

Query:    25 LGQLVSFTLALMSFTSSLIA-DLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR------L 77
             LGQ++S  +  +  TS  +A D   + PV QS   Y  L LVY   L  R+        L
Sbjct:    66 LGQVLSLLVCGIGLTSKYLAEDFHANTPVFQSFLNYILLFLVYTTTLAVRQGEENLLAIL 125

Query:    78 RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRY 133
             R  W+ Y++LG +D++ N+LV KAYQ++++TSV LLDC  I   I+L+W FL  RY
Sbjct:   126 RRRWWKYMILGLIDLEANYLVVKAYQYTTLTSVQLLDCFVIPVVILLSWFFLLIRY 181

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0287003 DDB_G0287003 "solute carrier family 35 member protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 185 (70.2 bits), Expect = 6.2e-29, Sum P(2) = 6.2e-29
 Identities = 47/116 (40%), Positives = 70/116 (60%)

Query:    23 LFLGQLVSFTLALMS-FTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR---QRLR 78
             L LGQL+S  +A    F+  L+   GV+ P TQS   Y  L  VY  VL+ R    + ++
Sbjct:    31 LALGQLLSVMIAGTGIFSQLLVKKYGVNIPTTQSLLNYILLC-VYLLVLVKRGVLWETIK 89

Query:    79 VAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYS 134
                 ++  L  VD++ N++V KAYQ+++ITSV LLDC TI   +VL+ +FL TR++
Sbjct:    90 TKSIYFAPLALVDLEANYIVVKAYQYTTITSVMLLDCFTIPCVVVLSRIFLKTRFT 145

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000029133 AN5236 [Emericella nidulans (taxid:162425)]

 Score = 143 (55.4 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
 Identities = 33/121 (27%), Positives = 66/121 (54%)

Query:    23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYR---RQRLRV 79
             L LGQ ++      +  ++L+A+   + P  Q+ F Y  L +++    +Y+   +    +
Sbjct:    64 LLLGQFLAIANTGTNTFNTLLANKNTNIPAFQTFFNYSLLNIIFTSYTIYKYGIKGWFEM 123

Query:    80 AWY--W-YLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLW 136
              W   W Y++L F DV+GN+ +  AY+++++ S  L++   I   +V+++LFL  RY + 
Sbjct:   124 LWKRGWKYIILSFCDVEGNYFMVLAYEYTTMMSAQLINFWAIVVVVVVSFLFLRVRYHIS 183

Query:   137 Q 137
             Q
Sbjct:   184 Q 184

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021639001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (323 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	272
pfam06027	336	pfam06027, DUF914, Eukaryotic protein of unknown f	1e-73
pfam08449	303	pfam08449, UAA, UAA transporter family	9e-06

>gnl|CDD|218861 pfam06027, DUF914, Eukaryotic protein of unknown function (DUF914)

 Score =  228 bits (582), Expect = 1e-73
 Identities = 107/249 (42%), Positives = 155/249 (62%), Gaps = 8/249 (3%)

Query: 16  TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR- 74
           T RTL  L LGQ++S  +   + TS  +A+ GV+AP  Q+   Y  L LVY G+L +RR 
Sbjct: 9   TKRTLIGLALGQILSLCITGTATTSQYLAEKGVNAPAFQTFLNYALLFLVYTGILAFRRG 68

Query: 75  -----QRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFL 129
                  ++  W+ Y++L  +DV+ N+LV KAYQ++++TSV LLDC  I   +VL+W FL
Sbjct: 69  EKNLLVIIKRKWWKYIILALIDVEANYLVVKAYQYTNLTSVQLLDCWAIPVVLVLSWFFL 128

Query: 130 GTRYSLWQLLGAALCVLGLGLVLLSD--AGGDGGGGSRPLLGDVLVIAGTIFFATSNVGE 187
             RY    +LG  +C+LG+  V+ SD  AG    GGS P+LGD+LV+AG   +A SNV E
Sbjct: 129 KVRYRASHILGVVICILGVVCVVGSDVLAGRRAYGGSNPVLGDILVLAGATLYAVSNVTE 188

Query: 188 EFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFY 247
           EF VKK  R E + M+G++G ++S +Q +I E K+L  + W   I L FAG+A   F+ Y
Sbjct: 189 EFLVKKLSRTEFLGMLGLFGAIISGIQTAIFERKALYKIHWDWEIGLLFAGFALCMFLLY 248

Query: 248 TLAPFVLKV 256
           +L P ++K 
Sbjct: 249 SLMPILIKK 257

This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as being putative membrane proteins. Length = 336

>gnl|CDD|219846 pfam08449, UAA, UAA transporter family

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 47/223 (21%), Positives = 83/223 (37%), Gaps = 28/223 (12%)

Query: 57  FAYFSLALVYGGVLLYRRQRLR---VAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLL 113
           FA F    + G + L   ++L+   +    Y+L+       + L N+A ++ S  +  + 
Sbjct: 37  FAQFLFISLVGLLYLLLFKKLKPRKIPLKTYVLIVATFFLSSVLNNEALKYISYPTHVIF 96

Query: 114 DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGS---RPLLGD 170
             C +   ++L  L  G RYS  Q L A L  LG+ +  L+ A              +G 
Sbjct: 97  KSCKLIPVMILGILIYGKRYSSLQYLSALLITLGVIIFTLASAKDSKNSKLTTFSDNVG- 155

Query: 171 VLVIAGTIFF--ATSNVGEEFFVK-KKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVE 227
           + ++ G +     T N  E+ + K  K   E++    +  L    + L  +         
Sbjct: 156 IALLFGALLMDALTGNTQEKLYKKYGKHSKEMMFYSHLLSLPFFLLGLLDI--------- 206

Query: 228 WSTNILLGFAGYAASSFMFYTLAPFVLKVILLFANC-YLLIRF 269
                     G   S+  F    P VL  +LL +   Y+   F
Sbjct: 207 --------RTGLLFSAESFCLRHPSVLFYLLLNSLTQYVGQFF 241

This family includes transporters with a specificity for UDP-N-acetylglucosamine. Length = 303

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	272
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	100.0
KOG2766	336	consensus Predicted membrane protein [Function unk	99.92
PRK11272	292	putative DMT superfamily transporter inner membran	99.9
PLN00411	358	nodulin MtN21 family protein; Provisional	99.89
PRK11689	295	aromatic amino acid exporter; Provisional	99.88
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.88
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.87
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.86
PRK15430	296	putative chloramphenical resistance permease RarD;	99.86
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.85
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.85
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.81
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.8
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.72
KOG2765	416	consensus Predicted membrane protein [Function unk	99.61
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.59
COG2962	293	RarD Predicted permeases [General function predict	99.57
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.56
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.54
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.53
COG2510	140	Predicted membrane protein [Function unknown]	99.46
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.46
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.39
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.34
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.3
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.16
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.05
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.05
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	99.04
PRK11272	292	putative DMT superfamily transporter inner membran	99.0
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.88
PLN00411	358	nodulin MtN21 family protein; Provisional	98.85
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.85
PRK11689	295	aromatic amino acid exporter; Provisional	98.84
KOG1581	327	consensus UDP-galactose transporter related protei	98.83
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.76
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.75
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.74
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.73
PRK15430	296	putative chloramphenical resistance permease RarD;	98.71
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.67
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.65
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.63
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.57
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.48
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.39
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.35
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.2
KOG1582	367	consensus UDP-galactose transporter related protei	98.12
PRK13499	345	rhamnose-proton symporter; Provisional	98.1
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.07
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.05
KOG1580	337	consensus UDP-galactose transporter related protei	97.89
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.84
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	97.81
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.77
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.75
COG2076	106	EmrE Membrane transporters of cations and cationic	97.7
PRK11431	105	multidrug efflux system protein; Provisional	97.7
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.64
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.52
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	97.42
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	97.26
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.22
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.08
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.97
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	96.91
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.88
COG2962	293	RarD Predicted permeases [General function predict	96.87
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.85
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.45
COG2510	140	Predicted membrane protein [Function unknown]	96.33
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	96.27
KOG2765	416	consensus Predicted membrane protein [Function unk	96.21
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	96.19
KOG1581	327	consensus UDP-galactose transporter related protei	96.16
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	96.05
PRK13499	345	rhamnose-proton symporter; Provisional	95.97
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.76
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	95.63
KOG1580	337	consensus UDP-galactose transporter related protei	95.07
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.05
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	94.32
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	94.25
KOG1582	367	consensus UDP-galactose transporter related protei	93.48
PRK02237	109	hypothetical protein; Provisional	93.45
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	92.89
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	91.95
KOG1443	349	consensus Predicted integral membrane protein [Fun	90.58
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	89.67
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	88.15
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	87.73
KOG3912	372	consensus Predicted integral membrane protein [Gen	87.59
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	85.34
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	84.33
COG1742	109	Uncharacterized conserved protein [Function unknow	80.45

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=100.00  E-value=1e-30  Score=231.45  Aligned_cols=257  Identities=44%  Similarity=0.760  Sum_probs=228.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcch------hhhhHHHHHHH
Q 024137           14 HVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR------LRVAWYWYLLL   87 (272)
Q Consensus        14 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~------~~~~~~~~~~~   87 (272)
                      .+++++++.+++|++++++.++++.+++.+.+.+..-|...++.-|....++..+....|+..      .+++|+++++.
T Consensus         6 ~~~~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~ll   85 (334)
T PF06027_consen    6 LFTRRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLL   85 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHH
Confidence            378899999999999999999999999999988777799999999988777776665444322      35678889999


Q ss_pred             HHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCC--CCCCCCC
Q 024137           88 GFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGG--DGGGGSR  165 (272)
Q Consensus        88 g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~--~~~~~~~  165 (272)
                      |++...+|++...|++|++.+.+.++.++..+++++++++++|||.++.|++|+++++.|+.++...|...  ++..+.+
T Consensus        86 a~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~  165 (334)
T PF06027_consen   86 ALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSN  165 (334)
T ss_pred             HHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999998887522  1123456


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHH
Q 024137          166 PLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFM  245 (272)
Q Consensus       166 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (272)
                      ...||+++++|+..||++++..|+..|+.|..+......++|.++..+....+|++..+..+|+...+..++++.++++.
T Consensus       166 ~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~  245 (334)
T PF06027_consen  166 PILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFL  245 (334)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999998778888988888888998888889999999999


Q ss_pred             HHhhHHHHHHhhh-hhhhhhhhhccC
Q 024137          246 FYTLAPFVLKVIL-LFANCYLLIRFP  270 (272)
Q Consensus       246 ~y~~~~~~~k~~~-~~~~~~~~~~~~  270 (272)
                      +|++.|..+|+++ +++|+++++.-|
T Consensus       246 ~y~l~p~~l~~ssAt~~nLsLLTsd~  271 (334)
T PF06027_consen  246 FYSLVPIVLRMSSATFFNLSLLTSDF  271 (334)
T ss_pred             HHHHHHHHHHhCccceeehHHHHhhH
Confidence            9999999999987 699999987543

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.92  E-value=1.7e-26  Score=191.55  Aligned_cols=251  Identities=43%  Similarity=0.794  Sum_probs=225.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH
Q 024137           15 VTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG   94 (272)
Q Consensus        15 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~   94 (272)
                      ++||+++|..+|++..+|.++.++.++.+++++...|...+|..|...+++..++...|++..+..|+.+++.++...-+
T Consensus        12 ~tkk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEa   91 (336)
T KOG2766|consen   12 STKKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEA   91 (336)
T ss_pred             hchhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecc
Confidence            38899999999999999999999999999988788899999999999999999998888877777888899999999999


Q ss_pred             HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCC-CCCCCCCchhHHHHH
Q 024137           95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGG-DGGGGSRPLLGDVLV  173 (272)
Q Consensus        95 ~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~-~~~~~~~~~~G~~~~  173 (272)
                      |++...|+||++-..+.++.+-....+.+++|+++|.|-.+.++.|+.+++.|+.+++.+|... +...++++..||.+.
T Consensus        92 Ny~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lv  171 (336)
T KOG2766|consen   92 NYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLV  171 (336)
T ss_pred             cEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEE
Confidence            9999999999999999999998888999999999999999999999999999999999887622 223356778999999


Q ss_pred             HHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHhhHHHH
Q 024137          174 IAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFV  253 (272)
Q Consensus       174 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~  253 (272)
                      ++++-+||+.++..+...|+.|..+++....++|+++..|- .+++..+....+|++....+ +.+.++++++|.+.|.+
T Consensus       172 i~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~i~~y-l~f~L~MFllYsl~pil  249 (336)
T KOG2766|consen  172 IAGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSAIFLY-LRFALTMFLLYSLAPIL  249 (336)
T ss_pred             EecceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHHHHHH-HHHHHHHHHHHHhhHHh
Confidence            99999999999999999999999999999999999999865 77888777778888555544 44889999999999999


Q ss_pred             HHhhh-hhhhhhhhh
Q 024137          254 LKVIL-LFANCYLLI  267 (272)
Q Consensus       254 ~k~~~-~~~~~~~~~  267 (272)
                      +|+++ ..+|+++|+
T Consensus       250 ~k~~~aT~~nlslLT  264 (336)
T KOG2766|consen  250 IKTNSATMFNLSLLT  264 (336)
T ss_pred             eecCCceEEEhhHhH
Confidence            99977 599999986

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.90  E-value=9.5e-21  Score=167.08  Aligned_cols=229  Identities=16%  Similarity=0.148  Sum_probs=161.5

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcch--hhhhHHHHHHHHHHHHHH
Q 024137           18 RTLYLLFLGQLVSF-TLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR--LRVAWYWYLLLGFVDVQG   94 (272)
Q Consensus        18 ~~~~~~~~~~~~a~-~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~--~~~~~~~~~~~g~~~~~~   94 (272)
                      |.+..+....+... .|+.+..+.|...  ++.+|...+++|+..++++++++..+++++  .+++++.....|.++...
T Consensus         4 ~~~~~~~~~~~~~~~iWg~~~~~~K~~~--~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   81 (292)
T PRK11272          4 RQLLPLFGALFALYIIWGSTYLVIRIGV--ESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAV   81 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHH
Confidence            34444544455554 4555555555444  378999999999999999888876554432  345577777888877655


Q ss_pred             -HHHHHHHh-hcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHH
Q 024137           95 -NFLVNKAY-QFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVL  172 (272)
Q Consensus        95 -~~l~~~al-~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~  172 (272)
                       +.+++.+. +++++++++++.++.|+++.+++.+ +|||+++++++|+.++++|+.++..++.      .+.+..|+++
T Consensus        82 ~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~------~~~~~~G~l~  154 (292)
T PRK11272         82 GNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN------LSGNPWGAIL  154 (292)
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc------cccchHHHHH
Confidence             77788888 9999999999999999999999985 7999999999999999999998865431      1233579999


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhcccccc-ccchhHHHHHHHHHHHHHHHHHhhHH
Q 024137          173 VIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLES-VEWSTNILLGFAGYAASSFMFYTLAP  251 (272)
Q Consensus       173 ~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~y~~~~  251 (272)
                      +++++++||.|.+..||..++ ++...+.+++..+++.+. +......++... .+........+.+. .+....|.++.
T Consensus       155 ~l~a~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~i-~~s~~~~~l~~  231 (292)
T PRK11272        155 ILIASASWAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVLL-IASLLSGERLTALPTLSGFLALGYLAV-FGSIIAISAYM  231 (292)
T ss_pred             HHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHH-HHHHHcCCcccccCCHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            999999999999999997543 445566788888888775 443332221111 11222223333333 34445667777


Q ss_pred             HHHHhhh
Q 024137          252 FVLKVIL  258 (272)
Q Consensus       252 ~~~k~~~  258 (272)
                      ..+|+.+
T Consensus       232 ~~~~~~~  238 (292)
T PRK11272        232 YLLRNVR  238 (292)
T ss_pred             HHHhhcC
Confidence            7888865

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.89  E-value=2.1e-20  Score=168.58  Aligned_cols=242  Identities=14%  Similarity=0.167  Sum_probs=171.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHh-c-ch-h---hhhHHHHHHHHHHHHHHHH
Q 024137           23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYR-R-QR-L---RVAWYWYLLLGFVDVQGNF   96 (272)
Q Consensus        23 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~-~-~~-~---~~~~~~~~~~g~~~~~~~~   96 (272)
                      ..-.+...++..+...++|...+ .+.+|....++|+.+++++++++.+++ + ++ .   ++++.+..+.|+++...+.
T Consensus        15 ~~~~~~~q~~~~~~~~~~k~a~~-~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~   93 (358)
T PLN00411         15 LTAMLATETSVVGISTLFKVATS-KGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVI   93 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            33444455677888888888884 578899999999999999998876532 2 11 1   2345677888888833377


Q ss_pred             HHHHHhhcchhhHHHHhhhhhHHHHHHHHHHH------hcccchhhHHHHHHHHHhhhhhhccccCCC------------
Q 024137           97 LVNKAYQFSSITSVTLLDCCTIAWAIVLTWLF------LGTRYSLWQLLGAALCVLGLGLVLLSDAGG------------  158 (272)
Q Consensus        97 l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~------~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~------------  158 (272)
                      +++.|++|+++++++++.++.|+++.++++++      +|||+++.+++|+.++++|+.++...+...            
T Consensus        94 ~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~  173 (358)
T PLN00411         94 TGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNF  173 (358)
T ss_pred             HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccc
Confidence            88999999999999999999999999999999      699999999999999999999987543100            


Q ss_pred             -----CCCCCCCc-hhHHHHHHHHHHHHHHHHHHHhhhccCCChH-HHHHHHHHHHHHHHHHHHHHhhcccccc--ccch
Q 024137          159 -----DGGGGSRP-LLGDVLVIAGTIFFATSNVGEEFFVKKKDRV-EVVCMIGVYGLLVSAVQLSILELKSLES--VEWS  229 (272)
Q Consensus       159 -----~~~~~~~~-~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~g~i~~~i~~~~~~~~~~~~--~~~~  229 (272)
                           +...+..+ ..|+.++++|+++||+|+++.|+..+++++. ..+.+++.++++.+.++....++++...  ..++
T Consensus       174 ~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  253 (358)
T PLN00411        174 RQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFD  253 (358)
T ss_pred             cccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccc
Confidence                 00011122 4599999999999999999999987787654 5566777777777765555555432211  1222


Q ss_pred             hHHH-HHHHHHHHHHHHHHhhHHHHHHhhh-hhhhhhhhh
Q 024137          230 TNIL-LGFAGYAASSFMFYTLAPFVLKVIL-LFANCYLLI  267 (272)
Q Consensus       230 ~~~~-~~~~~~~~~~~~~y~~~~~~~k~~~-~~~~~~~~~  267 (272)
                      ...+ ..+.+.  ...+.|.++...+|+.+ +.+.+.+.+
T Consensus       254 ~~~~~i~y~~i--~t~lay~lw~~~v~~~ga~~as~~~~L  291 (358)
T PLN00411        254 ITLITIVTMAI--ITSVYYVIHSWTVRHKGPLYLAIFKPL  291 (358)
T ss_pred             hHHHHHHHHHH--HHHHHHHHHHHHHhccCchHHHHHHhH
Confidence            2221 222332  23456778888888855 555555443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.88  E-value=1.6e-20  Score=165.81  Aligned_cols=227  Identities=16%  Similarity=0.082  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH-HHHHHH
Q 024137           22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG-NFLVNK  100 (272)
Q Consensus        22 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~l~~~  100 (272)
                      +.+.+.+..++|+++....|...  ++.+|....++|+.++.+++.++..  +++.++++++..+.+.+.... +.+++.
T Consensus         5 ~~l~~l~a~~~Wg~~~~~~k~~~--~~~~P~~~~~~R~~~a~l~l~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~   80 (295)
T PRK11689          5 ATLIGLIAILLWSTMVGLIRGVS--ESLGPVGGAAMIYSVSGLLLLLTVG--FPRLRQFPKRYLLAGGLLFVSYEICLAL   80 (295)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH--ccCChHHHHHHHHHHHHHHHHHHcc--ccccccccHHHHHHHhHHHHHHHHHHHH
Confidence            45666666777776666666654  4789999999999999988876532  222233333445555555555 666666


Q ss_pred             Hhh----cchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCC----CCCCCchhHHHH
Q 024137          101 AYQ----FSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDG----GGGSRPLLGDVL  172 (272)
Q Consensus       101 al~----~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~----~~~~~~~~G~~~  172 (272)
                      +++    +.++++++++.++.|+++.+++++++|||++++++.|+.++++|+.++..++.+.+.    +....+..|+.+
T Consensus        81 a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~  160 (295)
T PRK11689         81 SLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGL  160 (295)
T ss_pred             HHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHH
Confidence            665    467888899999999999999999999999999999999999999999865421000    001123579999


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHhhHHH
Q 024137          173 VIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPF  252 (272)
Q Consensus       173 ~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~  252 (272)
                      +++|+++||.|+++.||..++.++.....   ..+...+. +....+.+...  +++...+......+++....|.++..
T Consensus       161 ~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~-~~~~~~~~~~~--~~~~~~~~~l~~~~~~t~~~~~l~~~  234 (295)
T PRK11689        161 AFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALW-IKYFLSPQPAM--VFSLPAIIKLLLAAAAMGFGYAAWNV  234 (295)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHH-HHHHHhcCccc--cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999877777765422   22333333 22223322212  23333333333233456777888889


Q ss_pred             HHHhhh
Q 024137          253 VLKVIL  258 (272)
Q Consensus       253 ~~k~~~  258 (272)
                      .+|+.+
T Consensus       235 al~~~~  240 (295)
T PRK11689        235 GILHGN  240 (295)
T ss_pred             HHHccC
Confidence            999866

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.88  E-value=2e-20  Score=161.84  Aligned_cols=211  Identities=18%  Similarity=0.040  Sum_probs=157.5

Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH-HHHHHHHhhcchhhHHHH
Q 024137           34 ALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG-NFLVNKAYQFSSITSVTL  112 (272)
Q Consensus        34 ~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~l~~~al~~~~a~~a~~  112 (272)
                      +.+....|... +++.||....+.|+..+.+.+.+...++  +.++++++....|.++... +.+++.|+++++++++++
T Consensus         2 g~~~~~~k~~~-~~~~~~~~~~~~r~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~i   78 (260)
T TIGR00950         2 GTTGVVIGQYL-EGQVPLYFAVFRRLIFALLLLLPLLRRR--PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAAL   78 (260)
T ss_pred             cchHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHhc--cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHH
Confidence            34455555544 3468899999999988888877765444  3345666788888888777 888999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 024137          113 LDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVK  192 (272)
Q Consensus       113 l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~  192 (272)
                      +.++.|+++++++.+++|||+++++++|+.++++|+.++..++.      .+.+..|+.++++++++|+.+.++.|+..+
T Consensus        79 i~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~------~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~  152 (260)
T TIGR00950        79 LLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN------LSINPAGLLLGLGSGISFALGTVLYKRLVK  152 (260)
T ss_pred             HHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc------ccccHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence            99999999999999999999999999999999999999875431      234568999999999999999999999877


Q ss_pred             CCChH--HHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHH--HHHHHHHHHHHHHhhHHHHHHhhh
Q 024137          193 KKDRV--EVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILL--GFAGYAASSFMFYTLAPFVLKVIL  258 (272)
Q Consensus       193 ~~~~~--~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~y~~~~~~~k~~~  258 (272)
                      +.|+.  ....+.+..+.+++. +......+...   .+...+.  .+.+ .++....|.++...+|+.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~  217 (260)
T TIGR00950       153 KEGPELLQFTGWVLLLGALLLL-PFAWFLGPNPQ---ALSLQWGALLYLG-LIGTALAYFLWNKGLTLVD  217 (260)
T ss_pred             cCCchHHHHHHHHHHHHHHHHH-HHHHhcCCCCC---cchHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC
Confidence            77744  444466778877775 55444332221   1222332  2222 2344556777777888865

>TIGR00688 rarD rarD protein

Probab=99.87  E-value=1.5e-19  Score=156.53  Aligned_cols=219  Identities=16%  Similarity=0.077  Sum_probs=148.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcc------hh----hhh-HHHHHHHHH
Q 024137           21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ------RL----RVA-WYWYLLLGF   89 (272)
Q Consensus        21 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~------~~----~~~-~~~~~~~g~   89 (272)
                      ||+.+..+++++|+..+.+.|.+.   +.+|.++.++|...+.+++.++...+++      +.    +++ +......|.
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~~---~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   78 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLLK---PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL   78 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence            488899999999999999999742   5899999999999998887765432211      11    111 222445555


Q ss_pred             HHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhH
Q 024137           90 VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLG  169 (272)
Q Consensus        90 ~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G  169 (272)
                      +....+.++++|++++++++++.+.++.|+++++++++++|||+++++|.++.++++|+.++..++       ++..   
T Consensus        79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~-------~~~~---  148 (256)
T TIGR00688        79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK-------GSLP---  148 (256)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc-------CCch---
Confidence            544448899999999999999999999999999999999999999999999999999999886532       1111   


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhh-ccccccccc-hhHHHHHHHHHHHHHHHHH
Q 024137          170 DVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILE-LKSLESVEW-STNILLGFAGYAASSFMFY  247 (272)
Q Consensus       170 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~y  247 (272)
                       .++++++++||.|.+..||..+ .+....... ......... +..... .+..+..+. ..+.+..+.+  +.....|
T Consensus       149 -~~~l~aa~~~a~~~i~~~~~~~-~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~t~i~~  222 (256)
T TIGR00688       149 -WEALVLAFSFTAYGLIRKALKN-TDLAGFCLE-TLSLMPVAI-YYLLQTDFATVQQTNPFPIWLLLVLAG--LITGTPL  222 (256)
T ss_pred             -HHHHHHHHHHHHHHHHHhhcCC-CCcchHHHH-HHHHHHHHH-HHHHHhccCcccccCchhHHHHHHHHH--HHHHHHH
Confidence             4678999999999999999743 343322111 111111111 111111 111111111 1223333333  3355678


Q ss_pred             hhHHHHHHhhh
Q 024137          248 TLAPFVLKVIL  258 (272)
Q Consensus       248 ~~~~~~~k~~~  258 (272)
                      .++...+|+.+
T Consensus       223 ~l~~~a~~~~~  233 (256)
T TIGR00688       223 LAFVIAANRLP  233 (256)
T ss_pred             HHHHHHHHcCC
Confidence            88888999966

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.86  E-value=4.3e-19  Score=157.07  Aligned_cols=224  Identities=18%  Similarity=0.167  Sum_probs=149.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH-HHHHHHHh
Q 024137           24 FLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG-NFLVNKAY  102 (272)
Q Consensus        24 ~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~l~~~al  102 (272)
                      +.....+++|+.+..+.|...  ++.+|..+.++|+.++++.+.++..+++    .+++.....|+..... ..+++.++
T Consensus         7 l~~l~~~~~Wg~~~~~~k~~~--~~~~p~~~~~~R~~~a~~~l~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~   80 (299)
T PRK11453          7 VLALLVVVVWGLNFVVIKVGL--HNMPPLMLAGLRFMLVAFPAIFFVARPK----VPLNLLLGYGLTISFGQFAFLFCAI   80 (299)
T ss_pred             HHHHHHHHHHhhhHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHhcCCC----CchHHHHHHHHHHHHHHHHHHHHHH
Confidence            446667778888888887765  3689999999999998776665543222    2233444556555445 55677899


Q ss_pred             hc-chhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHH
Q 024137          103 QF-SSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFA  181 (272)
Q Consensus       103 ~~-~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a  181 (272)
                      ++ .++++++++.++.|+++.+++++++|||+++++++|+.++++|+.++..++.    +....+..|+.++++++++|+
T Consensus        81 ~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~----~~~~~~~~G~~l~l~aal~~a  156 (299)
T PRK11453         81 NFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSL----NGQHVAMLGFMLTLAAAFSWA  156 (299)
T ss_pred             HhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccC----CCcchhHHHHHHHHHHHHHHH
Confidence            88 5889999999999999999999999999999999999999999999885431    112233579999999999999


Q ss_pred             HHHHHHhhhccCCChH---HHHHHHHHHHHHHHHHHHHHhhcccc---ccccchhHHH--HHHHHHHHHHHHHHhhHHHH
Q 024137          182 TSNVGEEFFVKKKDRV---EVVCMIGVYGLLVSAVQLSILELKSL---ESVEWSTNIL--LGFAGYAASSFMFYTLAPFV  253 (272)
Q Consensus       182 ~~~v~~k~~~~~~~~~---~~~~~~~~~g~i~~~i~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~y~~~~~~  253 (272)
                      .|.++.||..++.++.   ....++...+.+.........+.+..   ...+++...+  ..+++. .+....|.++...
T Consensus       157 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i-~~t~~~~~l~~~~  235 (299)
T PRK11453        157 CGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF-VATIVGYGIWGTL  235 (299)
T ss_pred             HHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            9999999976554332   33344444444333212222332211   0012232333  334443 4455566666666


Q ss_pred             HHhhh
Q 024137          254 LKVIL  258 (272)
Q Consensus       254 ~k~~~  258 (272)
                      +|+-+
T Consensus       236 l~~~~  240 (299)
T PRK11453        236 LGRYE  240 (299)
T ss_pred             HHhCC
Confidence            66644

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.86  E-value=5.7e-19  Score=156.07  Aligned_cols=233  Identities=14%  Similarity=0.025  Sum_probs=155.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcc--hh---hhhHH--HHHHHHHH
Q 024137           18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ--RL---RVAWY--WYLLLGFV   90 (272)
Q Consensus        18 ~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~--~~---~~~~~--~~~~~g~~   90 (272)
                      ++.+|.++..+++++|+..+.+.|..   ++.+|..+.++|+..+.+++.++...+++  ..   .++++  .....+.+
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~---~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI---YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV   81 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence            55679999999999999999998765   25889999999999998877766543221  11   11222  23346666


Q ss_pred             HHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhH
Q 024137           91 DVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLG  169 (272)
Q Consensus        91 ~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G  169 (272)
                      +... +.++++|++++++++++++.++.|+++.+++++++|||+++++|.|+.++++|+.++..++       ++.    
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~-------~~~----  150 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTF-------GSL----  150 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc-------CCc----
Confidence            6666 8899999999999999999999999999999999999999999999999999999987543       111    


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCC--hHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHH
Q 024137          170 DVLVIAGTIFFATSNVGEEFFVKKKD--RVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFY  247 (272)
Q Consensus       170 ~~~~l~a~~~~a~~~v~~k~~~~~~~--~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  247 (272)
                      ..++++++++||+|.+..||..++..  ......++...+.+... +.  .+.+.....+.+...+..+...++.....|
T Consensus       151 ~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~  227 (296)
T PRK15430        151 PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLF-AI--ADSSTSHMGQNPMSLNLLLIAAGIVTTVPL  227 (296)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHH-HH--ccCCcccccCCcHHHHHHHHHHHHHHHHHH
Confidence            15688899999999999999643322  22223333333332221 11  111111000111111122222222344567


Q ss_pred             hhHHHHHHhhh-hhhhhhhhh
Q 024137          248 TLAPFVLKVIL-LFANCYLLI  267 (272)
Q Consensus       248 ~~~~~~~k~~~-~~~~~~~~~  267 (272)
                      .++....|+.+ ..+++...+
T Consensus       228 ~~~~~a~~~~~a~~~s~~~~l  248 (296)
T PRK15430        228 LCFTAAATRLRLSTLGFFQYI  248 (296)
T ss_pred             HHHHHHHhcCCHHHHHHHHHH
Confidence            78888888865 455544433

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.85  E-value=1.6e-18  Score=153.07  Aligned_cols=237  Identities=14%  Similarity=0.058  Sum_probs=169.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcc-hhhhhHHHHHHHHHHHHHH
Q 024137           16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ-RLRVAWYWYLLLGFVDVQG   94 (272)
Q Consensus        16 ~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~g~~~~~~   94 (272)
                      |-+..+++.+..++.++|+..+.+.|...+  +.+|..+.++|+.++.++++++.+++++ ..+++++.....|.+....
T Consensus         7 ~~~~~~~~~~~~la~~~~~~~~~~~K~~~~--~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   84 (293)
T PRK10532          7 KLPVWLPILLLLIAMASIQSGASLAKSLFP--LVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGM   84 (293)
T ss_pred             ccccchHHHHHHHHHHHHHhhHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHH
Confidence            445588999999999999999999888874  5899999999999999888876644332 2245566677788765455


Q ss_pred             HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHH
Q 024137           95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVI  174 (272)
Q Consensus        95 ~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l  174 (272)
                      +.++++|++|++++.++.+.++.|+++.+++    +||+++.  .++.++++|+.++..++. +   .+..+..|+++++
T Consensus        85 ~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~-~---~~~~~~~G~ll~l  154 (293)
T PRK10532         85 NYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQ-D---VSHVDLTGAALAL  154 (293)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCC-C---cccCChHHHHHHH
Confidence            8888999999999999999999999998887    3666554  456778999998874432 1   1223457999999


Q ss_pred             HHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHhhHHHHH
Q 024137          175 AGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVL  254 (272)
Q Consensus       175 ~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~  254 (272)
                      +++++||.|.+..||..++.++... .+....+++++. |....+.+. ...++.......+++. .+....|.++...+
T Consensus       155 ~aa~~~a~~~v~~r~~~~~~~~~~~-~~~~~~~~~~l~-~~~~~~~~~-~~~~~~~~~~~l~lgv-~~t~~~~~l~~~~~  230 (293)
T PRK10532        155 GAGACWAIYILSGQRAGAEHGPATV-AIGSLIAALIFV-PIGALQAGE-ALWHWSILPLGLAVAI-LSTALPYSLEMIAL  230 (293)
T ss_pred             HHHHHHHHHHHHHHHHhccCCchHH-HHHHHHHHHHHH-HHHHHccCc-ccCCHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            9999999999999998777787766 455566666664 544443221 1112222222233333 45566777888888


Q ss_pred             Hhhh-hhhhhhhhhc
Q 024137          255 KVIL-LFANCYLLIR  268 (272)
Q Consensus       255 k~~~-~~~~~~~~~~  268 (272)
                      |+.+ ..+++....|
T Consensus       231 ~~~~a~~as~~~~l~  245 (293)
T PRK10532        231 TRLPTRTFGTLMSME  245 (293)
T ss_pred             HhcChhHHHHHHHhH
Confidence            8866 4555554444

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.85  E-value=1.3e-18  Score=154.16  Aligned_cols=172  Identities=14%  Similarity=0.116  Sum_probs=139.7

Q ss_pred             HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH---Hhcc-hhhhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHH
Q 024137           37 SFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL---YRRQ-RLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTL  112 (272)
Q Consensus        37 ~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~---~~~~-~~~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~  112 (272)
                      .+..|.+.+ ....|..+++.|+..+.+.+.+...   ++++ ..++++++.+..|+++...+.+.+.|+++++++++++
T Consensus        18 ~~~NK~~l~-~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~l   96 (302)
T TIGR00817        18 NIYNKKLLN-VFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHT   96 (302)
T ss_pred             HHHHHHHHh-hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            445565553 3477999999999988776655421   1122 2345688889999987555888999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 024137          113 LDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVK  192 (272)
Q Consensus       113 l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~  192 (272)
                      +.++.|+++.+++++++|||++++++.|++++++|+.+....+       .+.+..|++++++|+++|++|.++.||..+
T Consensus        97 i~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-------~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~  169 (302)
T TIGR00817        97 IKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE-------LSFNWAGFLSAMISNITFVSRNIFSKKAMT  169 (302)
T ss_pred             HHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc-------ccccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999998764222       223467999999999999999999999877


Q ss_pred             --CCChHHHHHHHHHHHHHHHHHHHHH
Q 024137          193 --KKDRVEVVCMIGVYGLLVSAVQLSI  217 (272)
Q Consensus       193 --~~~~~~~~~~~~~~g~i~~~i~~~~  217 (272)
                        +.|+...+.++...+.+.++ |...
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~-p~~~  195 (302)
T TIGR00817       170 IKSLDKTNLYAYISIMSLFLLS-PPAF  195 (302)
T ss_pred             cCCCCcccHHHHHHHHHHHHHH-HHHH
Confidence              78999999999999988886 5543

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.81  E-value=2.3e-17  Score=148.95  Aligned_cols=171  Identities=15%  Similarity=0.121  Sum_probs=135.4

Q ss_pred             HHHHHHHhhcCCCC-hHHHHHHHHHHHHHHHHHHHHH---hcch---hhhhHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 024137           37 SFTSSLIADLGVDA-PVTQSAFAYFSLALVYGGVLLY---RRQR---LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITS  109 (272)
Q Consensus        37 ~~~~~~l~~~~~~~-p~~~~~~R~~~a~~~l~~~~~~---~~~~---~~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~  109 (272)
                      ....|.+.  +..| |.+++.+|++++.++...+...   ++++   .+++++..+..|+++...+...+.|+++++++.
T Consensus        65 ~~~nK~vl--~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~  142 (350)
T PTZ00343         65 VVDNKLAL--NMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSF  142 (350)
T ss_pred             HHHHHHHH--HhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence            34445554  3567 9999999999987765544321   1122   234577889999998877666779999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 024137          110 VTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEF  189 (272)
Q Consensus       110 a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~  189 (272)
                      ++++.++.|+++++++++++|||++++++.++++++.|+.+....+       .+.+..|++++++|+++||+++++.|+
T Consensus       143 ~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~-------~~~~~~G~~~~l~s~~~~a~~~i~~k~  215 (350)
T PTZ00343        143 THVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKE-------LHFTWLAFWCAMLSNLGSSLRSIFAKK  215 (350)
T ss_pred             HHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheeccc-------chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987543       123468999999999999999999999


Q ss_pred             hccC-------CChHHHHHHHHHHHHHHHHHHHHH
Q 024137          190 FVKK-------KDRVEVVCMIGVYGLLVSAVQLSI  217 (272)
Q Consensus       190 ~~~~-------~~~~~~~~~~~~~g~i~~~i~~~~  217 (272)
                      ..++       .++.....++...+.++++ |...
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-p~~~  249 (350)
T PTZ00343        216 TMKNKSEIGENLTASNIYMLLTLIASLISL-PLVL  249 (350)
T ss_pred             HhcccccccccCCHHHHHHHHHHHHHHHHH-HHHH
Confidence            8764       3455566666778888876 6544

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.80  E-value=3.2e-17  Score=143.84  Aligned_cols=164  Identities=17%  Similarity=0.124  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHh--c---chhhhhHHHHHHHHHHHHHH-HH
Q 024137           23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYR--R---QRLRVAWYWYLLLGFVDVQG-NF   96 (272)
Q Consensus        23 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~--~---~~~~~~~~~~~~~g~~~~~~-~~   96 (272)
                      .++..+++++++.....+|+..++  .++.  .+++.....+++.++...+  +   +..+++++.....+.++... +.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK--EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFL   78 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc--hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence            456778888999999998877643  3343  3667766677777765543  1   22233344444555545444 88


Q ss_pred             HHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHH
Q 024137           97 LVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAG  176 (272)
Q Consensus        97 l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a  176 (272)
                      +++.|+++.++++++.+.++.|+++.+++++++|||+++++|+|+.+++.|+.++..++.      +..+..|+.+++++
T Consensus        79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~------~~~~~~g~~~~l~a  152 (281)
T TIGR03340        79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRF------AQHRRKAYAWALAA  152 (281)
T ss_pred             HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccc------cccchhHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999875441      12334788899999


Q ss_pred             HHHHHHHHHHHhhhccCCCh
Q 024137          177 TIFFATSNVGEEFFVKKKDR  196 (272)
Q Consensus       177 ~~~~a~~~v~~k~~~~~~~~  196 (272)
                      +++|+.|.+..|+..++.++
T Consensus       153 al~~a~~~i~~k~~~~~~~~  172 (281)
T TIGR03340       153 ALGTAIYSLSDKAAALGVPA  172 (281)
T ss_pred             HHHHHHhhhhccccccchhc
Confidence            99999999999986544444

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.72  E-value=1e-14  Score=127.27  Aligned_cols=181  Identities=24%  Similarity=0.307  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhc---chhhhhHHHHHHHHHHHHHH
Q 024137           18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR---QRLRVAWYWYLLLGFVDVQG   94 (272)
Q Consensus        18 ~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~g~~~~~~   94 (272)
                      +..++.....+.++.|.......+...+. ..++....+.|...+.+...+...+++   ++.+++++...+.+.+....
T Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (292)
T COG0697           4 ALLLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLAL   82 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHH
Confidence            34456667777777777777777777643 466677777799888887544433332   11122234566666666666


Q ss_pred             -HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHH-HHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCC-chhHHH
Q 024137           95 -NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTW-LFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSR-PLLGDV  171 (272)
Q Consensus        95 -~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~-~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~-~~~G~~  171 (272)
                       +.+++.+++++++++++.+.++.|+++.+++. +++|||++++++.++.+++.|+.++..++..     +.. +..|+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~-----~~~~~~~g~~  157 (292)
T COG0697          83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG-----GGILSLLGLL  157 (292)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc-----chhHHHHHHH
Confidence             88899999999999999999999999999997 6679999999999999999999999877631     111 469999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCChHHHHH-HHHH
Q 024137          172 LVIAGTIFFATSNVGEEFFVKKKDRVEVVC-MIGV  205 (272)
Q Consensus       172 ~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~-~~~~  205 (272)
                      +++++++++|++.+..|+.. +.++..... ++..
T Consensus       158 ~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~  191 (292)
T COG0697         158 LALAAALLWALYTALVKRLS-RLGPVTLALLLQLL  191 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHH
Confidence            99999999999999999987 666666665 4444

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.61  E-value=4.1e-14  Score=124.06  Aligned_cols=257  Identities=21%  Similarity=0.206  Sum_probs=178.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHHHHHH----------HHh----------
Q 024137           15 VTLRTLYLLFLGQLVSFTLALMSFTSSLIADL-GVDAPVTQSAFAYFSLALVYGGVL----------LYR----------   73 (272)
Q Consensus        15 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~-~~~~p~~~~~~R~~~a~~~l~~~~----------~~~----------   73 (272)
                      +.-+...|+++..+..++|-.++...+.+... ....|+..++..-..-.+.+.++.          .|.          
T Consensus         8 ~~~r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e   87 (416)
T KOG2765|consen    8 KRWRWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEE   87 (416)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhh
Confidence            34467889999999999999999998888753 344688887766544444444322          110          


Q ss_pred             ----------------------------------c------------------chhh------------hhHHHHHHHHH
Q 024137           74 ----------------------------------R------------------QRLR------------VAWYWYLLLGF   89 (272)
Q Consensus        74 ----------------------------------~------------------~~~~------------~~~~~~~~~g~   89 (272)
                                                        .                  .+.+            +..+..+..+.
T Consensus        88 ~d~e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~  167 (416)
T KOG2765|consen   88 ADAEGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCP  167 (416)
T ss_pred             hhhhccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHH
Confidence                                              0                  0001            00223456666


Q ss_pred             HHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCC-CCCCCCCchh
Q 024137           90 VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGG-DGGGGSRPLL  168 (272)
Q Consensus        90 ~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~-~~~~~~~~~~  168 (272)
                      +.+.++++++.|+.+++++...++.++.-+|+..++.++..||.++.+.+++.+.+.|++++...+... ++.....+..
T Consensus       168 lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~ll  247 (416)
T KOG2765|consen  168 LWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLL  247 (416)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhH
Confidence            777889999999999999999999999999999999999999999999999999999999999876411 1122345689


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCC----ChHHHHHHHHHHHHHHHHHHHHHhh---ccccccccchhHHHHHHHHHHH
Q 024137          169 GDVLVIAGTIFFATSNVGEEFFVKKK----DRVEVVCMIGVYGLLVSAVQLSILE---LKSLESVEWSTNILLGFAGYAA  241 (272)
Q Consensus       169 G~~~~l~a~~~~a~~~v~~k~~~~~~----~~~~~~~~~~~~g~i~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  241 (272)
                      |+++++++++.||+|.+..||...+.    |.-....+..++..++..++..+.+   .+..+..+-.......+.+...
T Consensus       248 G~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~lig  327 (416)
T KOG2765|consen  248 GNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIG  327 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHH
Confidence            99999999999999999999875554    4444555555555555553333332   2222211111111122222223


Q ss_pred             HHHHHHhhHHHHHHhhhhhhhhhhhhccCC
Q 024137          242 SSFMFYTLAPFVLKVILLFANCYLLIRFPL  271 (272)
Q Consensus       242 ~~~~~y~~~~~~~k~~~~~~~~~~~~~~~~  271 (272)
                      ...--|.+.-.+.-+++.+++++|.+|.||
T Consensus       328 tvvSDylW~~a~~lTs~Lv~TlgmSltIPL  357 (416)
T KOG2765|consen  328 TVVSDYLWAKAVLLTSPLVVTLGMSLTIPL  357 (416)
T ss_pred             HHHHHHHHHHHHHhccchhheeeeeEeeeH
Confidence            344567777778888889999999999997

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.59  E-value=1.1e-12  Score=109.56  Aligned_cols=230  Identities=14%  Similarity=0.041  Sum_probs=168.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhc-chhhhhHHHHHHHHHHHHHHHHHHHH
Q 024137           22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR-QRLRVAWYWYLLLGFVDVQGNFLVNK  100 (272)
Q Consensus        22 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~l~~~  100 (272)
                      .++......+......-+.|.+.  +..+|.-.+.+|..++.+++.++++..+ +..+++|+.....|......|.+||.
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LF--P~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~   90 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLF--PLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYL   90 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHc--cccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHH
Confidence            45556666666666666777775  5788999999999999999988776433 33466788899999877777999999


Q ss_pred             HhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHH
Q 024137          101 AYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFF  180 (272)
Q Consensus       101 al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~  180 (272)
                      +++.+|-+.+..+.++-|+.+.+++.    +  +.++.+.+.+++.|+.++.-.+.    +....+..|..++++++.||
T Consensus        91 si~riPlGiAVAiEF~GPL~vA~~~s----R--r~~d~vwvaLAvlGi~lL~p~~~----~~~~lDp~Gv~~Al~AG~~W  160 (292)
T COG5006          91 SIERIPLGIAVAIEFTGPLAVALLSS----R--RLRDFVWVALAVLGIWLLLPLGQ----SVWSLDPVGVALALGAGACW  160 (292)
T ss_pred             HHHhccchhhhhhhhccHHHHHHHhc----c--chhhHHHHHHHHHHHHhheeccC----CcCcCCHHHHHHHHHHhHHH
Confidence            99999999999999999999887765    3  34556667788889888865442    23456689999999999999


Q ss_pred             HHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHH-HHHHHHHHHhhHHHHHHhhh-
Q 024137          181 ATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAG-YAASSFMFYTLAPFVLKVIL-  258 (272)
Q Consensus       181 a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~~~~~k~~~-  258 (272)
                      +.|.+..||..+..+..+.....+.+++++.+ |+......+ .  -+++..+..-++ ..++...-|.+-...+++-+ 
T Consensus       161 a~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~-Pig~~~ag~-~--l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~  236 (292)
T COG5006         161 ALYIVLGQRAGRAEHGTAGVAVGMLVAALIVL-PIGAAQAGP-A--LFSPSLLPLALGVAVLSSALPYSLEMIALRRLPA  236 (292)
T ss_pred             HHHHHHcchhcccCCCchHHHHHHHHHHHHHh-hhhhhhcch-h--hcChHHHHHHHHHHHHhcccchHHHHHHHhhCCh
Confidence            99999999987677888888888888888886 766533211 1  123333222222 23566777888888888765 


Q ss_pred             hhhhhhhhh
Q 024137          259 LFANCYLLI  267 (272)
Q Consensus       259 ~~~~~~~~~  267 (272)
                      -.+.+-+.+
T Consensus       237 ~~F~~LlSL  245 (292)
T COG5006         237 RTFGTLLSL  245 (292)
T ss_pred             hHHHHHHHh
Confidence            244444433

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.57  E-value=2.6e-12  Score=109.81  Aligned_cols=187  Identities=17%  Similarity=0.071  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH--Hhcchh---hhhHHHHH--HHHH
Q 024137           17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL--YRRQRL---RVAWYWYL--LLGF   89 (272)
Q Consensus        17 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~--~~~~~~---~~~~~~~~--~~g~   89 (272)
                      ++..+|++.+..+-++|+..-...+.+.   ..++..+...|.+-+.+.+...+.  ++++..   .++.+...  ..+.
T Consensus         3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll~---~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a   79 (293)
T COG2962           3 KDSRKGILLALLAYLLWGLLPLYFKLLE---PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTA   79 (293)
T ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHH
Confidence            3445699999999999999998888886   578889999999777666554433  232221   22222232  2333


Q ss_pred             HHHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchh
Q 024137           90 VDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLL  168 (272)
Q Consensus        90 ~~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~  168 (272)
                      ..++. ...|.+|.++..+-++++=++.+|++..+++.+++|||+++.||++++++.+||....+..       ++.+  
T Consensus        80 ~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~-------g~lp--  150 (293)
T COG2962          80 LLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL-------GSLP--  150 (293)
T ss_pred             HHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-------CCCc--
Confidence            34444 4567899999999999999999999999999999999999999999999999999998866       3444  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 024137          169 GDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILE  219 (272)
Q Consensus       169 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~  219 (272)
                        .-++.=+++|++|..+.|+.  ++|+.+.....++.-.++.++.....+
T Consensus       151 --wval~la~sf~~Ygl~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~  197 (293)
T COG2962         151 --WVALALALSFGLYGLLRKKL--KVDALTGLTLETLLLLPVALIYLLFLA  197 (293)
T ss_pred             --HHHHHHHHHHHHHHHHHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHh
Confidence              44555669999999998884  789999988888888888764444433

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.56  E-value=3.5e-12  Score=113.11  Aligned_cols=183  Identities=21%  Similarity=0.259  Sum_probs=146.5

Q ss_pred             HHHHHHHHHhhcCCCC--hHHHHHHHHHHHHHHHHHHHHHhc--chhhhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 024137           35 LMSFTSSLIADLGVDA--PVTQSAFAYFSLALVYGGVLLYRR--QRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSV  110 (272)
Q Consensus        35 ~~~~~~~~l~~~~~~~--p~~~~~~R~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a  110 (272)
                      ..+....++.+.+...  |..+++..+....+...+.....+  ++.+.++++++..+++......+-+.|++|+|.+.-
T Consensus        14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~   93 (303)
T PF08449_consen   14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQ   93 (303)
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence            3456666666555555  999999998887777666554433  334556788999999888889999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCC---chhHHHHHHHHHHHHHHHHHHH
Q 024137          111 TLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSR---PLLGDVLVIAGTIFFATSNVGE  187 (272)
Q Consensus       111 ~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~---~~~G~~~~l~a~~~~a~~~v~~  187 (272)
                      .+..++.|+++++++.+++|||.+++|+.++.+..+|+++....+..++...+..   ...|+.+.+++.++.|+..+++
T Consensus        94 ~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~q  173 (303)
T PF08449_consen   94 IVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQ  173 (303)
T ss_pred             HHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988764222211111   1349999999999999999999


Q ss_pred             hhhccC--CChHHHHHHHHHHHHHHHHHHHHH
Q 024137          188 EFFVKK--KDRVEVVCMIGVYGLLVSAVQLSI  217 (272)
Q Consensus       188 k~~~~~--~~~~~~~~~~~~~g~i~~~i~~~~  217 (272)
                      ||..++  .++.+.+.+...++.+...+....
T Consensus       174 e~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~  205 (303)
T PF08449_consen  174 EKLFKKYGKSPWELMFYTNLFSLPFLLILLFL  205 (303)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            998664  678899999999998888644444

; GO: 0055085 transmembrane transport

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.54  E-value=7.5e-16  Score=129.24  Aligned_cols=195  Identities=19%  Similarity=0.333  Sum_probs=151.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchh---hhhHHHHHHHHHHHHHH
Q 024137           18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRL---RVAWYWYLLLGFVDVQG   94 (272)
Q Consensus        18 ~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~g~~~~~~   94 (272)
                      +..+|+++..+. ..+-.+.+.+++..   +.+|....-.|.+.-.++-.|....+++..   +.+.+++++.|+.+..+
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~---e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tg  110 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVL---ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTG  110 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhh---ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhH
Confidence            446677777666 56666666666665   567888888886555555444443343322   12234577889989988


Q ss_pred             HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccC--CCCCC-----CCCCch
Q 024137           95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA--GGDGG-----GGSRPL  167 (272)
Q Consensus        95 ~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~--~~~~~-----~~~~~~  167 (272)
                      -.+.++|++|.+.++++++..+.|+++.++++.++|||.++.+.++..+.+.|++++..+..  ++++.     ..+.+.
T Consensus       111 vmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~  190 (346)
T KOG4510|consen  111 VMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDI  190 (346)
T ss_pred             HHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccC
Confidence            88999999999999999999999999999999999999999999999999999999988764  22211     113457


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHH
Q 024137          168 LGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLS  216 (272)
Q Consensus       168 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~  216 (272)
                      .|...++.+.+..|-..++.|+..|+.+......+....+.+..++...
T Consensus       191 ~gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~  239 (346)
T KOG4510|consen  191 PGTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCA  239 (346)
T ss_pred             CchHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHh
Confidence            8999999999999999999999989999888888888888888764443

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.53  E-value=4.8e-12  Score=111.53  Aligned_cols=184  Identities=15%  Similarity=0.089  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH-hcchh--hhhHHHHHHHHHHHHHHHHHH
Q 024137           22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY-RRQRL--RVAWYWYLLLGFVDVQGNFLV   98 (272)
Q Consensus        22 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~-~~~~~--~~~~~~~~~~g~~~~~~~~l~   98 (272)
                      ++++..+.+++|++.+...|+..   +.++.+..  |..++.+++..+... +.++.  ++.+..-.+.|......|.++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~   76 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG---GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQ   76 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC---CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhH
Confidence            46788889999999999999875   34555543  776666665544332 22221  122333444455455559999


Q ss_pred             HHHhhcchhhHHHHhhh-hhHHHHHHHHHHHhcccchhhH----HHHHHHHHhhhhhhccccCCCCCCCC-CCchhHHHH
Q 024137           99 NKAYQFSSITSVTLLDC-CTIAWAIVLTWLFLGTRYSLWQ----LLGAALCVLGLGLVLLSDAGGDGGGG-SRPLLGDVL  172 (272)
Q Consensus        99 ~~al~~~~a~~a~~l~~-~~Pv~~~lls~~~~~er~s~~~----~~gi~l~~~Gv~ll~~~~~~~~~~~~-~~~~~G~~~  172 (272)
                      +.|.++++++.+..+.+ +.++++.+.+.+++|||.++++    ++|+.++++|+.++...+.++....+ .+...|..+
T Consensus        77 ~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~  156 (290)
T TIGR00776        77 FKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILL  156 (290)
T ss_pred             HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHH
Confidence            99999999999999887 8999999999999999999999    99999999999998765421110000 223689999


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCChHHH---HHHHHHHHHHHHH
Q 024137          173 VIAGTIFFATSNVGEEFFVKKKDRVEV---VCMIGVYGLLVSA  212 (272)
Q Consensus       173 ~l~a~~~~a~~~v~~k~~~~~~~~~~~---~~~~~~~g~i~~~  212 (272)
                      +++|+++|+.|.+..|+.  +.||.+.   ..+....++.+..
T Consensus       157 ~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~  197 (290)
T TIGR00776       157 LLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFN  197 (290)
T ss_pred             HHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHH
Confidence            999999999999999986  5788877   4444444444443

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.46  E-value=1.1e-12  Score=98.59  Aligned_cols=129  Identities=22%  Similarity=0.262  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcch------hhhhHHHHHHHHHHHHHHH
Q 024137           22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR------LRVAWYWYLLLGFVDVQGN   95 (272)
Q Consensus        22 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~   95 (272)
                      -.+++.+.|++++...++.|.--  ++.+|-+.++.|-.+....+..++...++.      .++.|....+.|+.+....
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl--~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glsw   81 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGL--EGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHH
Confidence            46788899999888888888765  467899999999988887777766654432      2344666667775555558


Q ss_pred             HHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhc
Q 024137           96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL  152 (272)
Q Consensus        96 ~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~  152 (272)
                      .+||.|++..+++.++.+..++|+++.+++++++|||+|.++|+|+.+..+|++++.
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            889999999999999999999999999999999999999999999999999998875

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.46  E-value=2.1e-11  Score=104.63  Aligned_cols=177  Identities=20%  Similarity=0.173  Sum_probs=129.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCC
Q 024137           78 RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAG  157 (272)
Q Consensus        78 ~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~  157 (272)
                      +++..++.+.+++....|.+.+.++++.+++...++..+..+++++++.+++|+|++++||+++.+.+.|+.++-.++..
T Consensus        14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            34556788889888888999999999999999999999999999999999999999999999999999999998776542


Q ss_pred             CCCC---C-------CCCchhHHHHHHHHHHHHHHHHHHHhhhccCC--ChHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 024137          158 GDGG---G-------GSRPLLGDVLVIAGTIFFATSNVGEEFFVKKK--DRVEVVCMIGVYGLLVSAVQLSILELKSLES  225 (272)
Q Consensus       158 ~~~~---~-------~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~--~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~  225 (272)
                      +++.   .       +.+...|..+.++++++-++..++.||..|+.  +.+..+.....+|.++.++.....+++....
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~  173 (244)
T PF04142_consen   94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISE  173 (244)
T ss_pred             ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            2111   0       12347999999999999999999999998884  4555566667777777764433333322111


Q ss_pred             ----ccchhHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 024137          226 ----VEWSTNILLGFAGYAASSFMFYTLAPFVLKVIL  258 (272)
Q Consensus       226 ----~~~~~~~~~~~~~~~~~~~~~y~~~~~~~k~~~  258 (272)
                          ..++...+.....    ......+...++||.+
T Consensus       174 ~g~f~G~~~~~~~~i~~----~a~gGllva~v~Kyad  206 (244)
T PF04142_consen  174 SGFFHGYSWWVWIVIFL----QAIGGLLVAFVLKYAD  206 (244)
T ss_pred             CCchhhcchHHHHHHHH----HHHhhHHHHHHHHHHh
Confidence                1234433333222    2223355666788876

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.39  E-value=2.8e-12  Score=97.91  Aligned_cols=118  Identities=26%  Similarity=0.470  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH--hcc--h-hhhhHHHHHHHHHHHHHH-HHHHHHHhhcc
Q 024137           32 TLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY--RRQ--R-LRVAWYWYLLLGFVDVQG-NFLVNKAYQFS  105 (272)
Q Consensus        32 ~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~--~~~--~-~~~~~~~~~~~g~~~~~~-~~l~~~al~~~  105 (272)
                      +|+......|+..+  +.||....++|+..+.+ +.+....  +++  . ..+++......|.+.... +.++++|++++
T Consensus         2 ~~a~~~~~~k~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    2 SWAIYSVFSKKLLK--KISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             eeeeHHHHHHHHhc--cCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            45666777777774  48899999999999886 3333322  221  1 123456677777775444 88999999999


Q ss_pred             hhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhc
Q 024137          106 SITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL  152 (272)
Q Consensus       106 ~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~  152 (272)
                      +++.++.+.+++|+++.+++++++|||+++++++|+.+++.|+.++.
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998864

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.34  E-value=2.7e-11  Score=91.83  Aligned_cols=100  Identities=28%  Similarity=0.469  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcch------h-hhhHHHHHHHHHHHHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHH
Q 024137           56 AFAYFSLALVYGGVLLYRRQR------L-RVAWYWYLLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWL  127 (272)
Q Consensus        56 ~~R~~~a~~~l~~~~~~~~~~------~-~~~~~~~~~~g~~~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~  127 (272)
                      .+|+..+.+++..+...+++.      . ++++.+....|.++... +.++++|+++.+ +.++.+.++.|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            468888888777765543321      1 23355666778877745 888999999999 58889999999999999999


Q ss_pred             HhcccchhhHHHHHHHHHhhhhhhccccC
Q 024137          128 FLGTRYSLWQLLGAALCVLGLGLVLLSDA  156 (272)
Q Consensus       128 ~~~er~s~~~~~gi~l~~~Gv~ll~~~~~  156 (272)
                      ++|||++++++.+++++++|++++..++.
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            99999999999999999999999998774

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.30  E-value=1.4e-10  Score=100.31  Aligned_cols=130  Identities=22%  Similarity=0.237  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchh---hhhHHHHHHHHHHHHHH-
Q 024137           19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRL---RVAWYWYLLLGFVDVQG-   94 (272)
Q Consensus        19 ~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~g~~~~~~-   94 (272)
                      ..+|..++.+++++++......|+..++.+.++.....+|+..+.+++.+....+++..   .+++......+.++... 
T Consensus       126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (260)
T TIGR00950       126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALA  205 (260)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence            36799999999999999999999987533333445555788888888887765433221   23355566777776555 


Q ss_pred             HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhh
Q 024137           95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGL  148 (272)
Q Consensus        95 ~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv  148 (272)
                      +.++++++++.++++++.+.++.|+++.+++++++|||++..+++|..+.+.|+
T Consensus       206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            888999999999999999999999999999999999999999999999999886

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.16  E-value=9.5e-08  Score=84.22  Aligned_cols=232  Identities=15%  Similarity=0.081  Sum_probs=151.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHHHHHHHh----cchh-----------hhhHHHHH
Q 024137           23 LFLGQLVSFTLALMSFTSSLIADLG--VDAPVTQSAFAYFSLALVYGGVLLYR----RQRL-----------RVAWYWYL   85 (272)
Q Consensus        23 ~~~~~~~a~~~~~~~~~~~~l~~~~--~~~p~~~~~~R~~~a~~~l~~~~~~~----~~~~-----------~~~~~~~~   85 (272)
                      .+...+.-+..++.....++-.+.+  ...|.+..+.-=.+-.++....+.++    +++.           +++.....
T Consensus        17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~   96 (345)
T KOG2234|consen   17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVS   96 (345)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHH
Confidence            3333344444555555555554432  35566655543333333333333332    1111           11233456


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCC--CCC--C
Q 024137           86 LLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAG--GDG--G  161 (272)
Q Consensus        86 ~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~--~~~--~  161 (272)
                      +.+++...-|.+++.++.+.++++..+.+.+..+.|++++.+++|||.++.||.++.+.++|+.++-.+...  +..  .
T Consensus        97 vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~  176 (345)
T KOG2234|consen   97 VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSES  176 (345)
T ss_pred             HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCC
Confidence            666666555779999999999999999999999999999999999999999999999999999999733321  111  1


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHhhhccC--CChHHHHHHHHHHHHHHHHHHHHHhhccccc----cccchhHHHHH
Q 024137          162 GGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK--KDRVEVVCMIGVYGLLVSAVQLSILELKSLE----SVEWSTNILLG  235 (272)
Q Consensus       162 ~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~--~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~----~~~~~~~~~~~  235 (272)
                      ....+..|....+.++..-++..++.+|.+|+  .+.+--+....++|.+..++-....+.+...    ...++...|..
T Consensus       177 ~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~v  256 (345)
T KOG2234|consen  177 SAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLV  256 (345)
T ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHH
Confidence            23456899999999999999999999999876  5556666666788888887445444444331    12344545544


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhh
Q 024137          236 FAGYAASSFMFYTLAPFVLKVIL  258 (272)
Q Consensus       236 ~~~~~~~~~~~y~~~~~~~k~~~  258 (272)
                      .+.-+    ....+...++||++
T Consensus       257 Vl~~a----~gGLlvs~v~KyAD  275 (345)
T KOG2234|consen  257 VLLNA----VGGLLVSLVMKYAD  275 (345)
T ss_pred             HHHHh----ccchhHHHHHHHhH
Confidence            43332    22345566788876

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.05  E-value=5.7e-09  Score=92.05  Aligned_cols=211  Identities=17%  Similarity=0.239  Sum_probs=157.2

Q ss_pred             HHHHhh-cCCCChHHHHHHHHHHHHHHHHHHHHHh---cch--hhhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHh
Q 024137           40 SSLIAD-LGVDAPVTQSAFAYFSLALVYGGVLLYR---RQR--LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLL  113 (272)
Q Consensus        40 ~~~l~~-~~~~~p~~~~~~R~~~a~~~l~~~~~~~---~~~--~~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l  113 (272)
                      .|.+.+ .+..-|.+++..++..+.+........+   +++  .+.+++..+.+|+......++-+.|+.+.+++....+
T Consensus        36 nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~i  115 (316)
T KOG1441|consen   36 NKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTI  115 (316)
T ss_pred             eHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHH
Confidence            455554 2666788888887766666554432221   122  2245788899998888889999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhcc-
Q 024137          114 DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVK-  192 (272)
Q Consensus       114 ~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~-  192 (272)
                      ..++|+++.++++++.+|+.++..+..+.....|+.+-...+       .+.+..|...++.+.+..+..+++.|+..+ 
T Consensus       116 Ka~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e-------~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~  188 (316)
T KOG1441|consen  116 KALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE-------LSFNLFGFISAMISNLAFALRNILSKKLLTS  188 (316)
T ss_pred             HhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc-------ccccHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999999887655       346789999999999999999999999874 


Q ss_pred             ---CCChHHHHHHHHHHHHHHHHHHHHHh-hcccc---ccccchhHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 024137          193 ---KKDRVEVVCMIGVYGLLVSAVQLSIL-ELKSL---ESVEWSTNILLGFAGYAASSFMFYTLAPFVLKVIL  258 (272)
Q Consensus       193 ---~~~~~~~~~~~~~~g~i~~~i~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~k~~~  258 (272)
                         +.|+.....++.-++.+.+++|.... |++..   ....|+........ ..++.+........++.+.+
T Consensus       189 ~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~-~sv~~f~~Nls~f~~ig~tS  260 (316)
T KOG1441|consen  189 KGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL-NSVLAFLLNLSAFLVIGRTS  260 (316)
T ss_pred             cccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH-HHHHHHHHHHHHHHHHcccC
Confidence               37899999999888888886576544 33333   22123333222221 12556666666667777744

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.05  E-value=2e-08  Score=88.65  Aligned_cols=133  Identities=16%  Similarity=0.014  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcch--h-hhhHHHHHHHHHHHHHH-H
Q 024137           20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR--L-RVAWYWYLLLGFVDVQG-N   95 (272)
Q Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~--~-~~~~~~~~~~g~~~~~~-~   95 (272)
                      ..|.+++..++++++......++..+  ..+|....... ..+.+.+.++.......  . ...+...+..|++.... +
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~--~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~  223 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGA--EHGPATVAIGS-LIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPY  223 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc--cCCchHHHHHH-HHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHH
Confidence            45999999999999999999988864  34566665444 44455555554433221  1 12233445777776666 7


Q ss_pred             HHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        96 ~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      .++++++++.++++++.+.+++|+++.+++++++||+++..+++|..+.+.|++......
T Consensus       224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            789999999999999999999999999999999999999999999999999999886554

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=99.04  E-value=3.1e-09  Score=86.05  Aligned_cols=105  Identities=18%  Similarity=0.314  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCC
Q 024137           86 LLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSR  165 (272)
Q Consensus        86 ~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~  165 (272)
                      -..++....++.|..|++..++++++.+.++..-|+.+++++.+|+|+...++++.++++.|+.++.+.|.+     ...
T Consensus        58 PF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~-----~a~  132 (290)
T KOG4314|consen   58 PFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE-----HAD  132 (290)
T ss_pred             ceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch-----hhh
Confidence            344455566999999999999999999999999999999999999999999999999999999999876632     345


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 024137          166 PLLGDVLVIAGTIFFATSNVGEEFFVKKKD  195 (272)
Q Consensus       166 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~  195 (272)
                      ...|..+++.|+..-|.|.+..|+...+.+
T Consensus       133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn  162 (290)
T KOG4314|consen  133 EIIGIACAVGSAFMAALYKVLFKMFIGNAN  162 (290)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            689999999999999999999999876644

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.00  E-value=1.7e-08  Score=89.04  Aligned_cols=133  Identities=16%  Similarity=-0.016  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcch-----hhhhHHHHHHHHHHHHHH
Q 024137           20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR-----LRVAWYWYLLLGFVDVQG   94 (272)
Q Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~   94 (272)
                      ..|.+++..++++++......++..+  . ++.....++...+...+.++.......     ..+.|......++++...
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~  225 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLPL--P-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII  225 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCC--C-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence            35899999999999999998888753  2 244455667777777666654332111     123455666777766655


Q ss_pred             -HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           95 -NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        95 -~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                       +.++++++++.++++++.+.+++|+++++++++++||+++..+++|..+.+.|+.+....+
T Consensus       226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~  287 (292)
T PRK11272        226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK  287 (292)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence             8899999999999999999999999999999999999999999999999999999886544

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.88  E-value=2.1e-07  Score=79.37  Aligned_cols=164  Identities=25%  Similarity=0.304  Sum_probs=128.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHhcch------------h---hhh--HHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 024137           48 VDAPVTQSAFAYFSLALVYGGVLLYRRQR------------L---RVA--WYWYLLLGFVDVQGNFLVNKAYQFSSITSV  110 (272)
Q Consensus        48 ~~~p~~~~~~R~~~a~~~l~~~~~~~~~~------------~---~~~--~~~~~~~g~~~~~~~~l~~~al~~~~a~~a  110 (272)
                      ..+|...+..-++-=.+|+..+...|++.            .   +.+  ....+..+++.+.+..+.+.++.+++++..
T Consensus        36 fqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsf  115 (372)
T KOG3912|consen   36 FQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSF  115 (372)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHHHH
Confidence            44577776666666567776664433210            0   011  223445788888889999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccC---CCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 024137          111 TLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA---GGDGGGGSRPLLGDVLVIAGTIFFATSNVGE  187 (272)
Q Consensus       111 ~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~---~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~  187 (272)
                      .++.....+|+.+++.-+++++++.+||.|+.....|+..+...|.   .++-+.-+....|+++.+.+-+.-|...++.
T Consensus       116 QMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~E  195 (372)
T KOG3912|consen  116 QMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCE  195 (372)
T ss_pred             HHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999877653   1221222445799999999999999999999


Q ss_pred             hhhccC--CChHHHHHHHHHHHHHHH
Q 024137          188 EFFVKK--KDRVEVVCMIGVYGLLVS  211 (272)
Q Consensus       188 k~~~~~--~~~~~~~~~~~~~g~i~~  211 (272)
                      +|..++  ++|.+...++.++|..+.
T Consensus       196 ek~l~~~nV~pl~avg~eGlfG~v~~  221 (372)
T KOG3912|consen  196 EKQLKKSNVAPLQAVGWEGLFGLVIL  221 (372)
T ss_pred             HhhhhhccCCHHHHhhhhhhHHHHHH
Confidence            998765  789999999999995554

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.85  E-value=1.4e-07  Score=85.52  Aligned_cols=137  Identities=14%  Similarity=0.089  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHH-HHhcch---hh--hh--HHHHHHHHH
Q 024137           18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVL-LYRRQR---LR--VA--WYWYLLLGF   89 (272)
Q Consensus        18 ~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~-~~~~~~---~~--~~--~~~~~~~g~   89 (272)
                      +...|.++...++++|+......++..+ +..++...+++....+.+...+.. ..++..   +.  .+  ..-....++
T Consensus       186 ~~~lG~~l~l~aa~~wa~~~il~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i  264 (358)
T PLN00411        186 DWLIGGALLTIQGIFVSVSFILQAHIMS-EYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAI  264 (358)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHH
Confidence            3466999999999999988888887764 233344555555544444333222 222211   11  11  111223333


Q ss_pred             HHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           90 VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        90 ~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      .....+.++++++++.+++.+++..++.|++++++++++++|+++..+++|.++.+.|+.+...++
T Consensus       265 ~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~  330 (358)
T PLN00411        265 ITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK  330 (358)
T ss_pred             HHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence            322237788999999999999999999999999999999999999999999999999999987654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.85  E-value=2.5e-07  Score=81.95  Aligned_cols=136  Identities=15%  Similarity=0.064  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHH-HHhcc--------h-hhhhHHHHHHHH
Q 024137           20 LYLLFLGQLVSFTLALMSFTSSLIADLG-VDAPVTQSAFAYFSLALVYGGVL-LYRRQ--------R-LRVAWYWYLLLG   88 (272)
Q Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~-~~~p~~~~~~R~~~a~~~l~~~~-~~~~~--------~-~~~~~~~~~~~g   88 (272)
                      ..|.+++..++++++.....+++..++. ..+.....++-...+.+.+.... ..++.        . ....|...+..|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            4699999999999999999999876432 22223333333333333222211 11111        1 123355566777


Q ss_pred             HHHHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           89 FVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        89 ~~~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      ++.... +.+++.++++.++++++.+.+++|+++.+++++++||+++..+++|..+.+.|+.+...+.
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~  289 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL  289 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence            777666 8889999999999999999999999999999999999999999999999999998876544

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.84  E-value=1.2e-07  Score=83.73  Aligned_cols=131  Identities=19%  Similarity=0.023  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcc---hh-hhhHHHHHHHHHHHHHHH
Q 024137           20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ---RL-RVAWYWYLLLGFVDVQGN   95 (272)
Q Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~---~~-~~~~~~~~~~g~~~~~~~   95 (272)
                      ..|..++..++++++......++..+  +.+|.....   ......+.+.......   .. ...+......|+.....+
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~--~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~  229 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYAR--GKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGY  229 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccC--CCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHH
Confidence            45899999999999999999999863  345655422   2222333222221211   11 123444455554333338


Q ss_pred             HHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        96 ~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      .++++++++.++++++.+.++.|+++.+++++++||+++..+++|..+.+.|+.+....+
T Consensus       230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~  289 (295)
T PRK11689        230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT  289 (295)
T ss_pred             HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence            899999999999999999999999999999999999999999999999999998876544

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.83  E-value=2.8e-06  Score=73.38  Aligned_cols=167  Identities=17%  Similarity=0.278  Sum_probs=138.3

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHhcc--hhhhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHH
Q 024137           47 GVDAPVTQSAFAYFSLALVYGGVLLYRRQ--RLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVL  124 (272)
Q Consensus        47 ~~~~p~~~~~~R~~~a~~~l~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~ll  124 (272)
                      ...+|.++.+..-+.+.++-...+..+++  ..+++|+.+...++.+.....+.+.|++|++-.+-.+=.++.-+-+++.
T Consensus        47 rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlm  126 (327)
T KOG1581|consen   47 RFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLM  126 (327)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHH
Confidence            45678899998888887777555433222  2345688899999988888999999999999999999999999999999


Q ss_pred             HHHHhcccchhhHHHHHHHHHhhhhhhccccCCC-CCC-CCCCchhHHHHHHHHHHHHHHHHHHHhhhccC--CChHHHH
Q 024137          125 TWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGG-DGG-GGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK--KDRVEVV  200 (272)
Q Consensus       125 s~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~-~~~-~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~--~~~~~~~  200 (272)
                      ..++.|+|.+..+.+...+.-.|+.+....+..| +.. .+.+...|..+.....+.-++.+..+++..++  .++.+++
T Consensus       127 g~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM  206 (327)
T KOG1581|consen  127 GTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMM  206 (327)
T ss_pred             HHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHH
Confidence            9999999999999999999999999987765423 111 22455899999999999999999999998775  7889999


Q ss_pred             HHHHHHHHHHHHH
Q 024137          201 CMIGVYGLLVSAV  213 (272)
Q Consensus       201 ~~~~~~g~i~~~i  213 (272)
                      .+..+++.+....
T Consensus       207 ~~vNLf~~i~~~~  219 (327)
T KOG1581|consen  207 FGVNLFSAILNGT  219 (327)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998863

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.76  E-value=1.1e-07  Score=83.52  Aligned_cols=129  Identities=19%  Similarity=0.194  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChH----HHHHHHHHHHHHHHHHHHH-Hhcchh---hhhHHHHHHHHHHHH
Q 024137           21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPV----TQSAFAYFSLALVYGGVLL-YRRQRL---RVAWYWYLLLGFVDV   92 (272)
Q Consensus        21 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~----~~~~~R~~~a~~~l~~~~~-~~~~~~---~~~~~~~~~~g~~~~   92 (272)
                      +|..++..++++++......|+..+  +.+|.    ....+........+..... ++++..   ...+......+.+..
T Consensus       144 ~g~~~~l~aal~~a~~~i~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  221 (281)
T TIGR03340       144 KAYAWALAAALGTAIYSLSDKAAAL--GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMI  221 (281)
T ss_pred             hHHHHHHHHHHHHHHhhhhcccccc--chhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHH
Confidence            4677788888888777776665432  22222    2222233332122222221 122111   112333344444444


Q ss_pred             HH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhh
Q 024137           93 QG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV  151 (272)
Q Consensus        93 ~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll  151 (272)
                      .. +.++++++++.+++.++...++.|+++.+++++++||+++..+++|.++.+.|+.++
T Consensus       222 ~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~  281 (281)
T TIGR03340       222 GGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL  281 (281)
T ss_pred             HHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence            44 889999999999999999999999999999999999999999999999999998763

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.75  E-value=1.7e-07  Score=82.63  Aligned_cols=132  Identities=11%  Similarity=0.066  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHH---H-HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Q 024137           17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAY---F-SLALVYGGVLLYRRQRLRVAWYWYLLLGFVDV   92 (272)
Q Consensus        17 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~---~-~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~   92 (272)
                      .+..+|++++.++++..+......+..    +.+|....+...   . .+.++..++ .++++...+..+..++.|++..
T Consensus       148 ~~~~~Gi~~~l~sg~~y~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Gi~~~  222 (290)
T TIGR00776       148 FNFKKGILLLLMSTIGYLVYVVVAKAF----GVDGLSVLLPQAIGMVIGGIIFNLGH-ILAKPLKKYAILLNILPGLMWG  222 (290)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHc----CCCcceehhHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHH
Confidence            345679999999999998888888865    256777644443   3 333333332 1112222233444566888864


Q ss_pred             HHHHHHHHHhh-cchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHH----HHHHHHHhhhhhhcc
Q 024137           93 QGNFLVNKAYQ-FSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQL----LGAALCVLGLGLVLL  153 (272)
Q Consensus        93 ~~~~l~~~al~-~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~----~gi~l~~~Gv~ll~~  153 (272)
                      ..+.+++.+.+ +.+++.++.+.+..|+...+.+.+++||+.+++|+    +|..+.+.|+.++..
T Consensus       223 ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       223 IGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            44888999999 99999999999999999999999999999999999    999999999988753

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.74  E-value=2.3e-07  Score=82.18  Aligned_cols=136  Identities=14%  Similarity=0.079  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH-hcch-hhh---------h---HHH-H
Q 024137           20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY-RRQR-LRV---------A---WYW-Y   84 (272)
Q Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~-~~~~-~~~---------~---~~~-~   84 (272)
                      ..|.+++.+++++++......++..++...+|..+..+....+.+.+.|+... +... ...         .   ... .
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            45889999999999998888888765335788888888888888877777543 2111 110         0   010 1


Q ss_pred             HHHHHHHHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           85 LLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        85 ~~~g~~~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      ...+...... +.+.+.+++++++.++++.....|++++++++++++|+++..+++|..+++.|+.+....+
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k  295 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK  295 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            1222212222 4566789999999999999999999999999999999999999999999999999876544

specificities overlap.

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=4.8e-06  Score=72.60  Aligned_cols=196  Identities=15%  Similarity=0.065  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHHHHHHHHhc----chh-hhhHHHHHHHH
Q 024137           15 VTLRTLYLLFLGQLVSFTLALMSFTSSLIADL-GVDAPVTQSAFAYFSLALVYGGVLLYRR----QRL-RVAWYWYLLLG   88 (272)
Q Consensus        15 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~-~~~~p~~~~~~R~~~a~~~l~~~~~~~~----~~~-~~~~~~~~~~g   88 (272)
                      ++++..+++.-+..=++.-..+.+..|..-.. +...-+.+..++.+...+.+.. +.+-|    ++. ++..++++...
T Consensus         6 ~~~~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~-lk~~~lv~~~~l~~~~~kk~~P~~   84 (314)
T KOG1444|consen    6 GSKKQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLV-LKRLGLVNFRPLDLRTAKKWFPVS   84 (314)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH-HHHhceeecCCcChHHHHHHccHH
Confidence            34555556666666666666677778777643 4433344445777776665543 33222    122 23355677777


Q ss_pred             HHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchh
Q 024137           89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLL  168 (272)
Q Consensus        89 ~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~  168 (272)
                      ++.....+.-..+++|.++....++....|+++++.+..++|.|++++.|.++....+|......+|.       ..+..
T Consensus        85 ~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~-------sf~~~  157 (314)
T KOG1444|consen   85 LLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDL-------SFNLR  157 (314)
T ss_pred             HHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccc-------eecch
Confidence            76666666677899999999999999999999999999999999999999999999988877766552       33456


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccC--CChHHHHHHHHHHHHHHHHHHHHHh
Q 024137          169 GDVLVIAGTIFFATSNVGEEFFVKK--KDRVEVVCMIGVYGLLVSAVQLSIL  218 (272)
Q Consensus       169 G~~~~l~a~~~~a~~~v~~k~~~~~--~~~~~~~~~~~~~g~i~~~i~~~~~  218 (272)
                      |+.+++...++-+.+.+..|+..+.  .+......+..+.......+....+
T Consensus       158 gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~  209 (314)
T KOG1444|consen  158 GYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFIT  209 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHh
Confidence            9999999999999999999987544  4566677777777666665333333

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.71  E-value=4.4e-07  Score=80.23  Aligned_cols=72  Identities=11%  Similarity=0.162  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           84 YLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        84 ~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      ....|+.....+.++++++++.+++.++.+.+..|++..++++++++|+++..+++|.++.+.|+.++..++
T Consensus       216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~  287 (296)
T PRK15430        216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA  287 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            334454444448999999999999999999999999999999999999999999999999999998887554

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.67  E-value=1.8e-06  Score=68.41  Aligned_cols=130  Identities=15%  Similarity=0.148  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc-----CCCChHHHHHHHHHHHHHHHHHHHHH-hcch-------h-------h-hh
Q 024137           22 LLFLGQLVSFTLALMSFTSSLIADL-----GVDAPVTQSAFAYFSLALVYGGVLLY-RRQR-------L-------R-VA   80 (272)
Q Consensus        22 ~~~~~~~~a~~~~~~~~~~~~l~~~-----~~~~p~~~~~~R~~~a~~~l~~~~~~-~~~~-------~-------~-~~   80 (272)
                      |.+++....++.+......+++.+.     +..+|..+..+-...+.+.+.+.... ++..       .       . +.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            4567778888888888888887765     58889999888888888877776442 2211       0       1 11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhh
Q 024137           81 WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV  151 (272)
Q Consensus        81 ~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll  151 (272)
                      +......|++....|...+..++++++...++......+.+.++++++++|+++..++.|+.+++.|+.+-
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y  151 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY  151 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence            33445556666666999999999999999999999999999999999999999999999999999998753

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.65  E-value=2.6e-07  Score=69.60  Aligned_cols=67  Identities=12%  Similarity=0.023  Sum_probs=59.9

Q ss_pred             HHHHHHHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhc
Q 024137           86 LLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL  152 (272)
Q Consensus        86 ~~g~~~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~  152 (272)
                      ..++.+... +.++..++++.|.+.+..+.++.++++.+.+++++|||++.+|++|+.+++.|++++.
T Consensus        41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            334455555 7888899999999999999889999999999999999999999999999999998875

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.63  E-value=2.7e-06  Score=74.00  Aligned_cols=133  Identities=29%  Similarity=0.285  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHH-HHHHHHHHHHHHHHHHhc--chhhhhHHHHHHHHHHHHHH-
Q 024137           19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSA-FAYFSLALVYGGVLLYRR--QRLRVAWYWYLLLGFVDVQG-   94 (272)
Q Consensus        19 ~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~-~R~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~g~~~~~~-   94 (272)
                      ...|...+..++++++......+++.   ..++..... +..........+......  +.....+......|++.... 
T Consensus       152 ~~~g~~~~l~a~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  228 (292)
T COG0697         152 SLLGLLLALAAALLWALYTALVKRLS---RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLA  228 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHH
Confidence            56799999999999998888888776   345555555 333322232222222222  12234466677888777754 


Q ss_pred             HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccc
Q 024137           95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLS  154 (272)
Q Consensus        95 ~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~  154 (272)
                      +.++++++++.+++.++.+.++.|++..++++++++|+++..+++|..+.+.|+.+....
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999988654

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.57  E-value=3.8e-06  Score=76.06  Aligned_cols=133  Identities=13%  Similarity=0.032  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCChHHHHHHHHHHHHHHHHHHHH-Hhcchhh-----------h-hH
Q 024137           20 LYLLFLGQLVSFTLALMSFTSSLIADLG-----VDAPVTQSAFAYFSLALVYGGVLL-YRRQRLR-----------V-AW   81 (272)
Q Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~-----~~~p~~~~~~R~~~a~~~l~~~~~-~~~~~~~-----------~-~~   81 (272)
                      +.|.+++.+++++++..++.+|++.++.     ..++.....+-...+.++++|+.. .+.....           . .+
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            5699999999999999999999987532     245655555456677777777654 2221100           0 01


Q ss_pred             HHHH---HHHHHHHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhc
Q 024137           82 YWYL---LLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL  152 (272)
Q Consensus        82 ~~~~---~~g~~~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~  152 (272)
                      ....   +.+.+.... |...+++++++++.+.++...+.|+++.+++++++||+++..+++|..+++.|+.+..
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence            1111   111112222 4444579999999999999999999999999999999999999999999999998754

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.48  E-value=5.8e-05  Score=65.23  Aligned_cols=124  Identities=15%  Similarity=0.091  Sum_probs=98.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhh-hhhHHHHHHHHHHHhcccchhhHHH----HHHHHHhhhhhhcc
Q 024137           79 VAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLD-CCTIAWAIVLTWLFLGTRYSLWQLL----GAALCVLGLGLVLL  153 (272)
Q Consensus        79 ~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~-~~~Pv~~~lls~~~~~er~s~~~~~----gi~l~~~Gv~ll~~  153 (272)
                      +.+..-++.|++....+...+.|+++.+++.+..+. ..+-+.+.+.+.++|||..+..+++    ++.+.++|+.+-..
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            446666788888888899999999999999999885 6777779999999999998877655    78888999999888


Q ss_pred             ccCCCCCC-CCCCchhHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHH
Q 024137          154 SDAGGDGG-GGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIG  204 (272)
Q Consensus       154 ~~~~~~~~-~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~  204 (272)
                      .|..++.. .+.+...|....+++.+.|..|.++.|.  .+.|+.+...-|.
T Consensus       123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~~lPqa  172 (269)
T PF06800_consen  123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHVSGWSAFLPQA  172 (269)
T ss_pred             ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCCChhHhHHHHH
Confidence            77532221 1234468999999999999999999887  4677777655543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.39  E-value=1.3e-05  Score=69.37  Aligned_cols=168  Identities=11%  Similarity=0.069  Sum_probs=111.3

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHh--cchh-------hhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhH
Q 024137           48 VDAPVTQSAFAYFSLALVYGGVLLYR--RQRL-------RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTI  118 (272)
Q Consensus        48 ~~~p~~~~~~R~~~a~~~l~~~~~~~--~~~~-------~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~P  118 (272)
                      ..=|+.++.+..++-.+......+.+  +.+.       +...++....|+....---+-+++++|++.+..++..++.+
T Consensus        42 f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi  121 (349)
T KOG1443|consen   42 FHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSI  121 (349)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHH
Confidence            44488888877765554443332211  1111       11234444555433222445678999999999999999999


Q ss_pred             HHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhccCC----
Q 024137          119 AWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKK----  194 (272)
Q Consensus       119 v~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~----  194 (272)
                      +|+.+++.++.=||+++.-..-+++.-+|+.+..+.+       .+.+..|..+..+|.++-++-..+.+...++.    
T Consensus       122 ~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks-------Tqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~  194 (349)
T KOG1443|consen  122 LFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS-------TQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAK  194 (349)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc-------cceeehhHHHHHHHHHhhhhhHHHHHHHHhcCcccc
Confidence            9999999999889999999999999999999988766       24557899999988888777777777665442    


Q ss_pred             -ChHHHHHHHHHHHHHHHHHHHHHhhccc
Q 024137          195 -DRVEVVCMIGVYGLLVSAVQLSILELKS  222 (272)
Q Consensus       195 -~~~~~~~~~~~~g~i~~~i~~~~~~~~~  222 (272)
                       +|........-.-.+.+++..+.+|...
T Consensus       195 ~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~  223 (349)
T KOG1443|consen  195 RNPIDTIFHLQPWMSIGLLPLSLLFEGLH  223 (349)
T ss_pred             CCCeeeHHHhhhHHHHHHHHHHHHHcccc
Confidence             3444333333233333333455566543

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.35  E-value=1.6e-05  Score=67.08  Aligned_cols=130  Identities=15%  Similarity=-0.017  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcch-hhhh--HHHHHHHHHHHHHH-HH
Q 024137           21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR-LRVA--WYWYLLLGFVDVQG-NF   96 (272)
Q Consensus        21 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~-~~~~--~~~~~~~g~~~~~~-~~   96 (272)
                      .|+.++..++.+|+..-+..++..+ .+..+.. ...-+.+++++..|+-...-.. ...+  ...-+..|++.... +.
T Consensus       148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g-~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYs  225 (292)
T COG5006         148 VGVALALGAGACWALYIVLGQRAGR-AEHGTAG-VAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYS  225 (292)
T ss_pred             HHHHHHHHHhHHHHHHHHHcchhcc-cCCCchH-HHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchH
Confidence            3899999999999999999999874 2333444 3447788888888875433221 1111  23345666666666 88


Q ss_pred             HHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhc
Q 024137           97 LVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL  152 (272)
Q Consensus        97 l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~  152 (272)
                      +...++++.|....+.+.+++|.+.++..++++||++|..||.++...+.+.+=..
T Consensus       226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~  281 (292)
T COG5006         226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST  281 (292)
T ss_pred             HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence            89999999999999999999999999999999999999999999998888766443

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.20  E-value=1.2e-05  Score=62.19  Aligned_cols=72  Identities=24%  Similarity=0.285  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHH--HhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           84 YLLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWL--FLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        84 ~~~~g~~~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~--~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      +...|+..... ..++..++++.|.+.+..+.+..+.++.+.++.  ++||++|..|++|+.+.++|+.++..++
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            56667666666 888999999999999999999998888888885  8999999999999999999999987544

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.12  E-value=5.5e-05  Score=64.59  Aligned_cols=181  Identities=18%  Similarity=0.238  Sum_probs=132.2

Q ss_pred             HHHHHHHHHhhcCCCChH--HHHHHHHHHHHHHHHHHHH-HhcchhhhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 024137           35 LMSFTSSLIADLGVDAPV--TQSAFAYFSLALVYGGVLL-YRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVT  111 (272)
Q Consensus        35 ~~~~~~~~l~~~~~~~p~--~~~~~R~~~a~~~l~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~  111 (272)
                      ..+...-+..+..+.+|.  .+++.+++.-.-+.+..+. .+.++...+|+.+..++.+..+..-+-..++.|.+-..-.
T Consensus        57 ~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQv  136 (367)
T KOG1582|consen   57 VYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQV  136 (367)
T ss_pred             HHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhhhhccccCcCccccccCcHHH
Confidence            344445555555666664  4555555544333222211 2223334568888888877766666777788888888888


Q ss_pred             HhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhc
Q 024137          112 LLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFV  191 (272)
Q Consensus       112 ~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~  191 (272)
                      +..++.-+-+++.+.++-++|-...+..+..+..+|.++....|.   +.....+..|+.+.=+|-++-|+-..++++..
T Consensus       137 iFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs---~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m  213 (367)
T KOG1582|consen  137 IFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADS---QTSPNFNLIGVMMISGALLADAVIGNVQEKAM  213 (367)
T ss_pred             HHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccc---ccCCCcceeeHHHHHHHHHHHHHhhHHHHHHH
Confidence            888999999999999999999999999999999999999887663   22234567999999999999999999999886


Q ss_pred             cC--CChHHHHHHHHHHHHHHHHHHHHHh
Q 024137          192 KK--KDRVEVVCMIGVYGLLVSAVQLSIL  218 (272)
Q Consensus       192 ~~--~~~~~~~~~~~~~g~i~~~i~~~~~  218 (272)
                      +.  .+..++..+....|.+.++.|..+.
T Consensus       214 ~~~~~ss~EmvfySy~iG~vflf~~mvlT  242 (367)
T KOG1582|consen  214 KMNPASSSEMVFYSYGIGFVFLFAPMVLT  242 (367)
T ss_pred             hhCCCCcceEEEeeecccHHHHHHHHHhc
Confidence            65  4566778888888888887666544

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.10  E-value=0.00034  Score=62.80  Aligned_cols=164  Identities=11%  Similarity=-0.044  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHH----HH-Hh-----cchhhhhHHHHHH
Q 024137           17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGV----LL-YR-----RQRLRVAWYWYLL   86 (272)
Q Consensus        17 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~----~~-~~-----~~~~~~~~~~~~~   86 (272)
                      +++..|+++-.+.++++++...-.|+ .+..+.+-.+.+..  ....+ +.|+    +. +.     ++...+.+..-.+
T Consensus         3 ~~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~v~g--i~~wl-~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l   78 (345)
T PRK13499          3 NAIILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWSVGG--IFSWL-ILPWLIAALLLPDFWAYYSSFSGSTLLPVFL   78 (345)
T ss_pred             chhHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHHHHH--HHHHH-HHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence            46788999999999999888877777 33333223332111  11111 1111    11 10     0111233555667


Q ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccc---h----hhHHHHHHHHHhhhhhhcc----c
Q 024137           87 LGFVDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRY---S----LWQLLGAALCVLGLGLVLL----S  154 (272)
Q Consensus        87 ~g~~~~~~~~l~~~al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~---s----~~~~~gi~l~~~Gv~ll~~----~  154 (272)
                      .|.+...++..++.++++...+.+..+ ..++-+...++..++++|-.   +    ..-..|+++.++|+++...    .
T Consensus        79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k  158 (345)
T PRK13499         79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLK  158 (345)
T ss_pred             HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            777777779999999999999999976 58899999999999999765   2    3467889999999999887    4


Q ss_pred             cCCCCC--CCCCCchhHHHHHHHHHHHHHHHH
Q 024137          155 DAGGDG--GGGSRPLLGDVLVIAGTIFFATSN  184 (272)
Q Consensus       155 ~~~~~~--~~~~~~~~G~~~~l~a~~~~a~~~  184 (272)
                      |.++.+  +.+....+|...++++++.+++|+
T Consensus       159 ~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        159 ERKMGIKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             ccccccccccccchHhHHHHHHHHHHHHHHHH
Confidence            421111  122345799999999999999999

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.07  E-value=0.00015  Score=64.19  Aligned_cols=122  Identities=19%  Similarity=0.168  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH-
Q 024137           16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG-   94 (272)
Q Consensus        16 ~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-   94 (272)
                      +.+...|+.++++.+++.+......|+-..+.+.++.     |--          ...++..+++   .+..|+..... 
T Consensus         2 ~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~-----~~~----------~~~~~~l~~~---~W~~G~~~~~~g   63 (300)
T PF05653_consen    2 NTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSL-----RAG----------SGGRSYLRRP---LWWIGLLLMVLG   63 (300)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----ccc----------chhhHHHhhH---HHHHHHHHHhcc
Confidence            3567789999999888877776666665432111010     100          0000111122   23334333333 


Q ss_pred             HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        95 ~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      ..+.+.|+...|++..+.+....-++..+++..++|||++++++.|..+++.|..++...+
T Consensus        64 ~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~  124 (300)
T PF05653_consen   64 EILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA  124 (300)
T ss_pred             hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence            7777889999999999999999999999999999999999999999999999999876544

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.05  E-value=0.0002  Score=63.49  Aligned_cols=135  Identities=15%  Similarity=0.108  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH--hcch---------hhhhHHHHHHHHH
Q 024137           21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY--RRQR---------LRVAWYWYLLLGF   89 (272)
Q Consensus        21 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~--~~~~---------~~~~~~~~~~~g~   89 (272)
                      .|+.+..+..++-+..+....++.++.+.++....++-...+.+...+....  ....         .+..+...+..++
T Consensus       154 ~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~  233 (303)
T PF08449_consen  154 LGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL  233 (303)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence            3999999988888888888888877667788888888877777666655443  2211         1122455667777


Q ss_pred             HHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           90 VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        90 ~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      .+..++.+.+.-.++.++...+++..+--+++.+++.++++++++..+|+|+.+.+.|..+-...+
T Consensus       234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~  299 (303)
T PF08449_consen  234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAK  299 (303)
T ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhh
Confidence            777777777777899999999999999999999999999999999999999999999998876554

; GO: 0055085 transmembrane transport

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.89  E-value=0.00033  Score=58.75  Aligned_cols=139  Identities=13%  Similarity=0.138  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCC
Q 024137           81 WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDG  160 (272)
Q Consensus        81 ~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~  160 (272)
                      -+.+..++.....+...-+.|+|+.|-.+..+=.+..|+-++++...+.|++-++.+...+...+.|+++..+.+....+
T Consensus        85 ~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g  164 (337)
T KOG1580|consen   85 TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGG  164 (337)
T ss_pred             chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCC
Confidence            44577777766666777899999999999999999999999999999999999999999999999999999987641111


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHhhhccC--CChHHHHHHHHHHHHHHHHHHHHHhhc
Q 024137          161 GGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK--KDRVEVVCMIGVYGLLVSAVQLSILEL  220 (272)
Q Consensus       161 ~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~--~~~~~~~~~~~~~g~i~~~i~~~~~~~  220 (272)
                      ..+.....|.++.++|-..-+.....++|..++  -+..+++.+..+++.+.+. ...++..
T Consensus       165 ~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg-~g~lfTG  225 (337)
T KOG1580|consen  165 AEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLG-AGLLFTG  225 (337)
T ss_pred             CcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhh-hhheehh
Confidence            122344789999999999999999999987555  3455677788888887775 3444433

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.84  E-value=0.00039  Score=60.15  Aligned_cols=122  Identities=7%  Similarity=-0.037  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH--hcchhhhhHHHHHHHHHHHHH
Q 024137           16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY--RRQRLRVAWYWYLLLGFVDVQ   93 (272)
Q Consensus        16 ~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~--~~~~~~~~~~~~~~~g~~~~~   93 (272)
                      +++..+|+....+..+..+....+.+..    +.+|....+ -..++.++-...+..  +++..++..++-.+.|++...
T Consensus       133 ~~~~~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~l-PqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~i  207 (269)
T PF06800_consen  133 KSNMKKGILALLISTIGYWIYSVIPKAF----HVSGWSAFL-PQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGI  207 (269)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHH-HHHHHHHHHHHHHhhcccccccccchHHhhHHHHHHHH
Confidence            4567788888888888777777665553    455655433 333332222221111  222233344567888988888


Q ss_pred             HHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHH
Q 024137           94 GNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAA  142 (272)
Q Consensus        94 ~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~  142 (272)
                      +|.+++.|.+....+.+-.+..+.++...+.+.+++||+=+++++.-..
T Consensus       208 gnl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~  256 (269)
T PF06800_consen  208 GNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL  256 (269)
T ss_pred             HHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence            8999999999999999999999999999999999999999988775444

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.81  E-value=0.00016  Score=61.87  Aligned_cols=169  Identities=17%  Similarity=0.189  Sum_probs=115.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHH-hc-------chhh---hhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhh
Q 024137           48 VDAPVTQSAFAYFSLALVYGGVLLY-RR-------QRLR---VAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCC  116 (272)
Q Consensus        48 ~~~p~~~~~~R~~~a~~~l~~~~~~-~~-------~~~~---~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~  116 (272)
                      -..|..++++.-+....+...+-+. ++       ++.+   +.-+.+.-.++..+.+-.+-+..++|.+++..-+=.++
T Consensus        58 Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsL  137 (347)
T KOG1442|consen   58 LDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSL  137 (347)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccch
Confidence            4569999998876665544433221 11       1111   11234444444433333344568889999888888889


Q ss_pred             hHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhccCC--
Q 024137          117 TIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKK--  194 (272)
Q Consensus       117 ~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~--  194 (272)
                      .-+|+.+++++++|+|-+..-..+..+.+.|.-+=. ++ +  +..+.....|.++++.|.++-|+..+..||.....  
T Consensus       138 ttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv-dq-E--~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~  213 (347)
T KOG1442|consen  138 TTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV-DQ-E--GSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGD  213 (347)
T ss_pred             hhhHHHHhHHhhcccccccccceeehhheehheecc-cc-c--cccCccchhhhHHHHHHHHHHHHHHHhhheecccccC
Confidence            999999999999999999888888887777743321 11 1  11233457999999999999999999999875553  


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024137          195 DRVEVVCMIGVYGLLVSAVQLSILELK  221 (272)
Q Consensus       195 ~~~~~~~~~~~~g~i~~~i~~~~~~~~  221 (272)
                      ..+..+.+....+.++.+ |......+
T Consensus       214 ~iw~lt~ynnv~a~lLfl-pll~lnge  239 (347)
T KOG1442|consen  214 CIWRLTAYNNVNALLLFL-PLLILNGE  239 (347)
T ss_pred             eehhhHHHHHHHHHHHHH-HHHHHcch
Confidence            367888888888888886 76665543

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.77  E-value=0.00043  Score=51.78  Aligned_cols=61  Identities=18%  Similarity=0.270  Sum_probs=53.8

Q ss_pred             HHHH-HHHHHHHhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhh
Q 024137           91 DVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV  151 (272)
Q Consensus        91 ~~~~-~~l~~~al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll  151 (272)
                      .... +++...|+++.|.+.+-.+ ....-+.+.+.+++++||+++..|++|+.+.+.|++.+
T Consensus        44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            4444 7788899999999998765 67888999999999999999999999999999999876

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.75  E-value=0.00049  Score=51.64  Aligned_cols=68  Identities=18%  Similarity=0.298  Sum_probs=58.2

Q ss_pred             HHHHHHH-HHHHHHHhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           88 GFVDVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        88 g~~~~~~-~~l~~~al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      .+..... ..++..++++.|.+.+-.+ ....-+.+.+.+++++||+++..+++|+.+.++|++.+-..+
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3444455 7778899999999998876 668889999999999999999999999999999999986443

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.70  E-value=0.00054  Score=50.61  Aligned_cols=65  Identities=23%  Similarity=0.208  Sum_probs=56.6

Q ss_pred             HHHHHH-HHHHHHHhhcchhhHHHH-hhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcc
Q 024137           89 FVDVQG-NFLVNKAYQFSSITSVTL-LDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL  153 (272)
Q Consensus        89 ~~~~~~-~~l~~~al~~~~a~~a~~-l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~  153 (272)
                      ..+... +.+...|+++.|.+.+-. -...-.+-+.+.++++|||+.+..+++++.+.++|++.+-.
T Consensus        37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            344444 788889999999999875 47888999999999999999999999999999999998754

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.70  E-value=0.00061  Score=50.64  Aligned_cols=64  Identities=19%  Similarity=0.062  Sum_probs=55.7

Q ss_pred             HHHHHH-HHHHHHHhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhc
Q 024137           89 FVDVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL  152 (272)
Q Consensus        89 ~~~~~~-~~l~~~al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~  152 (272)
                      +..... +++...|+++.|.+.+-.+ ...--+.+.+.+.+++||+++..+++|+.+.+.|++.+-
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            334444 7788899999999998765 568889999999999999999999999999999999874

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.64  E-value=0.00042  Score=52.73  Aligned_cols=68  Identities=16%  Similarity=0.180  Sum_probs=58.5

Q ss_pred             HHHHHHH-HHHHHHHhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           88 GFVDVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        88 g~~~~~~-~~l~~~al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      .+..... .+++..++++.|.+.+-.+ ....-+.+.+.+.+++||++|..+++|+.+.++|++.+-..+
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            3444444 7888899999999998876 578999999999999999999999999999999999886544

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.52  E-value=0.0054  Score=47.97  Aligned_cols=127  Identities=18%  Similarity=0.170  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcc-hh---hhhHHHHHHHHHHHHHHHHHH
Q 024137           23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ-RL---RVAWYWYLLLGFVDVQGNFLV   98 (272)
Q Consensus        23 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~-~~---~~~~~~~~~~g~~~~~~~~l~   98 (272)
                      ++++..+..+.+........+.++-+ +|...++.-+..+.+.+..+....++ ..   ++..++...-|+++...-.+.
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~   81 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSN   81 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHH
Confidence            45566666777777777777775422 59999999998888877766554333 21   111233455667676667777


Q ss_pred             HHHhhcchhhHHHHh-hhhhHHHHHHHHHH----HhcccchhhHHHHHHHHHhhhhh
Q 024137           99 NKAYQFSSITSVTLL-DCCTIAWAIVLTWL----FLGTRYSLWQLLGAALCVLGLGL  150 (272)
Q Consensus        99 ~~al~~~~a~~a~~l-~~~~Pv~~~lls~~----~~~er~s~~~~~gi~l~~~Gv~l  150 (272)
                      ....++.+++.+..+ ..-+-+...++.++    .-|++++.++.+|+++.++|+.+
T Consensus        82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            888899998888764 56777778888886    35789999999999999999864

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.42  E-value=0.005  Score=51.41  Aligned_cols=187  Identities=14%  Similarity=0.039  Sum_probs=124.9

Q ss_pred             HHHHHHHhhcCC-CChHHHHHHHHHHHHHHHHHHHHHhc-chh-hhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHh
Q 024137           37 SFTSSLIADLGV-DAPVTQSAFAYFSLALVYGGVLLYRR-QRL-RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLL  113 (272)
Q Consensus        37 ~~~~~~l~~~~~-~~p~~~~~~R~~~a~~~l~~~~~~~~-~~~-~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l  113 (272)
                      +...|+..+..+ .--+.+.+.+.+...+.+.. +++-| -.. .++.+.+...+++....-+.--.++||.++...++.
T Consensus        22 TltNKyVls~~gfnMnflll~vQSlvcvv~l~i-Lk~l~~~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiF  100 (309)
T COG5070          22 TLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLI-LKFLRLVEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIF  100 (309)
T ss_pred             HHhhHheecCCCCchhhHHHHHHHHHHHHHHHH-HHHHhHhheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHh
Confidence            334455544333 22344455555554443332 22111 111 223344556666555555556789999999999999


Q ss_pred             hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhcc-
Q 024137          114 DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVK-  192 (272)
Q Consensus       114 ~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~-  192 (272)
                      ..+..+.++..+..+||.|++..+..+.++.+..-..-.++|.............|++++..-+++-+.+....|+..+ 
T Consensus       101 KNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~l  180 (309)
T COG5070         101 KNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKL  180 (309)
T ss_pred             ccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhcc
Confidence            9999999999999999999999999998888877777666664111112234568999999999999999999997644 


Q ss_pred             -CCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 024137          193 -KKDRVEVVCMIGVYGLLVSAVQLSILELKSLE  224 (272)
Q Consensus       193 -~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~  224 (272)
                       +....+.+.|..+.+..+++....++|.++..
T Consensus       181 tNf~d~dtmfYnNllslPiL~~~s~~~edws~~  213 (309)
T COG5070         181 TNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPG  213 (309)
T ss_pred             cccchhhHHHHhhhHHHHHHHHHHHHhccCCcc
Confidence             34566677888888888876555566644433

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=97.26  E-value=3.7e-05  Score=64.75  Aligned_cols=172  Identities=15%  Similarity=0.119  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchhh-hhHHHHHHHHHHHHHHHHHHHH
Q 024137           22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLR-VAWYWYLLLGFVDVQGNFLVNK  100 (272)
Q Consensus        22 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~l~~~  100 (272)
                      .++++.+-++.|+....++.+...    +|......--+-+.++....++...+... +.+..-++.|.+...++...+.
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG----~p~qQ~lGtT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfk   78 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGG----KPYQQTLGTTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQFK   78 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCC----ChhHhhhhccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhhh
Confidence            567888999999998888877752    35554443222222222222222222222 2233445566666666899999


Q ss_pred             HhhcchhhHHHHhh-hhhHHHHHHHHHHHhcccchhhHH----HHHHHHHhhhhhhccccCCCCCC-CCCCchhHHHHHH
Q 024137          101 AYQFSSITSVTLLD-CCTIAWAIVLTWLFLGTRYSLWQL----LGAALCVLGLGLVLLSDAGGDGG-GGSRPLLGDVLVI  174 (272)
Q Consensus       101 al~~~~a~~a~~l~-~~~Pv~~~lls~~~~~er~s~~~~----~gi~l~~~Gv~ll~~~~~~~~~~-~~~~~~~G~~~~l  174 (272)
                      |.++.+++.+..+. .++-+-+.+++.+.+||..+..+.    .++++.+.|+.+-.+.|..|... ..++.-.|....+
T Consensus        79 a~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~  158 (288)
T COG4975          79 AIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILL  158 (288)
T ss_pred             heeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeee
Confidence            99999999999875 678888999999999999987654    46777788888877766322221 1233468888889


Q ss_pred             HHHHHHHHHHHHHhhhccCCChHHH
Q 024137          175 AGTIFFATSNVGEEFFVKKKDRVEV  199 (272)
Q Consensus       175 ~a~~~~a~~~v~~k~~~~~~~~~~~  199 (272)
                      .|.+.|-.|.+..+..  +.|.++.
T Consensus       159 iSt~GYv~yvvl~~~f--~v~g~sa  181 (288)
T COG4975         159 ISTLGYVGYVVLFQLF--DVDGLSA  181 (288)
T ss_pred             eeccceeeeEeeeccc--cccchhh
Confidence            9999999999998875  2444443

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.22  E-value=0.011  Score=52.97  Aligned_cols=138  Identities=18%  Similarity=0.142  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH-Hhcchhh---hhHHH-HHHHH--
Q 024137           16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL-YRRQRLR---VAWYW-YLLLG--   88 (272)
Q Consensus        16 ~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~-~~~~~~~---~~~~~-~~~~g--   88 (272)
                      .++..+|-++.+..|++.+.....-.++.++  .++......--+.+.++..+... .+++..+   .++.. ....|  
T Consensus       163 ~~~~i~GDll~l~~a~lya~~nV~~E~~v~~--~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~  240 (334)
T PF06027_consen  163 GSNPILGDLLALLGAILYAVSNVLEEKLVKK--APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYA  240 (334)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHH
Confidence            3467889999999999999999999888753  34443332222333443333322 2332221   11111 11222  


Q ss_pred             HHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        89 ~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      +.....+.+....++++++....+=.-+..+++.+...+++|+++++..++|.++.++|..+....+
T Consensus       241 ~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~  307 (334)
T PF06027_consen  241 LCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE  307 (334)
T ss_pred             HHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence            2122224455667888888877776678899999999999999999999999999999999987655

Some of the sequences in this family are annotated as putative membrane proteins.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.08  E-value=0.0075  Score=43.79  Aligned_cols=53  Identities=17%  Similarity=0.187  Sum_probs=31.4

Q ss_pred             HHHH-HHHHHHHhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHH
Q 024137           91 DVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAAL  143 (272)
Q Consensus        91 ~~~~-~~l~~~al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l  143 (272)
                      .... ..++..|+++.|.+.+-.+ .....+.+.+.+.+++||++|..|+.|+.+
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l   92 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence            4444 7788899999999999765 579999999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.97  E-value=0.00064  Score=58.12  Aligned_cols=131  Identities=15%  Similarity=0.173  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH----HhcchhhhhHHHHHHHHHHHHHHHHHH
Q 024137           23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL----YRRQRLRVAWYWYLLLGFVDVQGNFLV   98 (272)
Q Consensus        23 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~l~   98 (272)
                      .+-+.-.++..+..=++-+++.|.-  +......+-.+++.+.-...+.    ...+.-.++|+....+|+++...+.+.
T Consensus       193 t~aai~s~lf~asvyIilR~iGk~~--h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIll  270 (346)
T KOG4510|consen  193 TVAAISSVLFGASVYIILRYIGKNA--HAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQILL  270 (346)
T ss_pred             hHHHHHhHhhhhhHHHHHHHhhccc--cEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHHH
Confidence            3334444444445556667775432  2222222222333332222221    122333566766788999999999999


Q ss_pred             HHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           99 NKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        99 ~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      ..++|.--++.++++.++..++..+.-.+++|+.|+++.|.|+.+.+.....+....
T Consensus       271 Tm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k  327 (346)
T KOG4510|consen  271 TMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK  327 (346)
T ss_pred             HHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence            999999999999999999999999999999999999999999887776666655433

>TIGR00688 rarD rarD protein

Probab=96.91  E-value=0.022  Score=49.06  Aligned_cols=49  Identities=12%  Similarity=0.143  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHH
Q 024137           80 AWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLF  128 (272)
Q Consensus        80 ~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~  128 (272)
                      +|......|+.....+.++++|+++.+++.++...+++|+++.+++.+.
T Consensus       207 ~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       207 IWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            5666777777644449999999999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00803 nst UDP-galactose transporter

Probab=96.88  E-value=0.015  Score=49.02  Aligned_cols=67  Identities=18%  Similarity=0.298  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhh
Q 024137           84 YLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGL  150 (272)
Q Consensus        84 ~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~l  150 (272)
                      .....+.+.....+..+.+++.+...-+....+.++++.+++.++++|+++..++.|+.+.+.|+.+
T Consensus       155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            3344444444467788899999999999999999999999999999999999999999999988653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.87  E-value=0.07  Score=46.43  Aligned_cols=75  Identities=21%  Similarity=0.315  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           81 WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        81 ~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      +..+...|......-.++..|-++.+-+....+.|..|....+++.+++||.++..|..+-+..-.|+++...++
T Consensus       211 ~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~  285 (293)
T COG2962         211 WLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG  285 (293)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666666668889999999999999999999999999999999999999999999999999988887654

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.85  E-value=0.0042  Score=55.19  Aligned_cols=136  Identities=16%  Similarity=0.162  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCChHHHHHHHHHHHHHHHH-HHHHHh-cchh--------hhhHHHHHHH
Q 024137           20 LYLLFLGQLVSFTLALMSFTSSLIAD--LGVDAPVTQSAFAYFSLALVYG-GVLLYR-RQRL--------RVAWYWYLLL   87 (272)
Q Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~~l~~--~~~~~p~~~~~~R~~~a~~~l~-~~~~~~-~~~~--------~~~~~~~~~~   87 (272)
                      +.|.+.+.+.-+..+.-.+.++++.+  ....++..+..+-.-++...++ |+.... +...        .-+.......
T Consensus       162 ~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (316)
T KOG1441|consen  162 LFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLN  241 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHH
Confidence            56888888888888888888888874  3467787777766667777776 765432 1111        1112233344


Q ss_pred             HHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           88 GFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        88 g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      +++....|...+..+.++++-+-++.....=..+...++.+++|+++..+..|.++++.|+.+-....
T Consensus       242 sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k  309 (316)
T KOG1441|consen  242 SVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAK  309 (316)
T ss_pred             HHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHh
Confidence            45555558889999999999999999999999999999999999999999999999999999876543

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.45  E-value=0.0093  Score=44.78  Aligned_cols=109  Identities=14%  Similarity=0.112  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 024137           28 LVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSI  107 (272)
Q Consensus        28 ~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~al~~~~a  107 (272)
                      +.+++|+.+..+-|+-.+..+.....  . |..--...           .-.+|+ +.+-=.++..+...|++.+.+.|.
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~--~-~~~~~~~~-----------Ll~n~~-y~ipf~lNq~GSv~f~~~L~~~dl   67 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLEKVKAS--L-QLLQEIKF-----------LLLNPK-YIIPFLLNQSGSVLFFLLLGSADL   67 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcCCccch--H-HHHHHHHH-----------HHHhHH-HHHHHHHHHHHHHHHHHHHhcCCc
Confidence            35678888888887776532211111  1 21111111           112333 333223466668999999999999


Q ss_pred             hHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhh
Q 024137          108 TSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV  151 (272)
Q Consensus       108 ~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll  151 (272)
                      +.+..+ +++.=++|.+.++++.+|..+++.++|+++.+.|+.+.
T Consensus        68 SlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   68 SLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             eeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            999988 58899999999988888888899999999999998763

Many members are annotated as potential transmembrane proteins.

>COG2510 Predicted membrane protein [Function unknown]

Probab=96.33  E-value=0.053  Score=41.43  Aligned_cols=89  Identities=10%  Similarity=-0.064  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHh
Q 024137          169 GDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYT  248 (272)
Q Consensus       169 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~  248 (272)
                      -.++++++++.++...++.|--.++.||...+........+.+.+......+.+. .-+.+...+.....-+++......
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~-~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQA-GGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceec-ccccCcceehhhhHHHHHHHHHHH
Confidence            3589999999999999999998899999999888888877777633333322221 222455555555444456666667


Q ss_pred             hHHHHHHhhh
Q 024137          249 LAPFVLKVIL  258 (272)
Q Consensus       249 ~~~~~~k~~~  258 (272)
                      +|.+.+|.+.
T Consensus        83 ~Yf~ALk~G~   92 (140)
T COG2510          83 LYFRALKKGK   92 (140)
T ss_pred             HHHHHHhcCC
Confidence            7778899876

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.27  E-value=0.24  Score=39.09  Aligned_cols=131  Identities=15%  Similarity=0.154  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcc--hhh--hh-HHHHHHHHHHHHHH
Q 024137           20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ--RLR--VA-WYWYLLLGFVDVQG   94 (272)
Q Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~--~~~--~~-~~~~~~~g~~~~~~   94 (272)
                      ...++.+..+..+....+.+...+.+... +|..-++.-+..+..++..+.+.+.+  ...  .+ .++..+-|.++...
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~   82 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIF   82 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhh
Confidence            34566777777788888888888886543 68888888998887777666554222  111  22 22344445444444


Q ss_pred             HHHHHHHhhcchhhH-HHHhhhhhHHHHHHHHHHHh----cccchhhHHHHHHHHHhhhhhh
Q 024137           95 NFLVNKAYQFSSITS-VTLLDCCTIAWAIVLTWLFL----GTRYSLWQLLGAALCVLGLGLV  151 (272)
Q Consensus        95 ~~l~~~al~~~~a~~-a~~l~~~~Pv~~~lls~~~~----~er~s~~~~~gi~l~~~Gv~ll  151 (272)
                      -..-.....+..++. ..++.+.+-+..+++..+=.    +++++..++.|+++.++|+.++
T Consensus        83 vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238          83 VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence            333344555555555 44567888888888887733    5889999999999999995444

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=96.21  E-value=0.054  Score=48.68  Aligned_cols=139  Identities=19%  Similarity=0.145  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--C-CChHHHHHHHHHHHHHHHHHHHH----Hhcchh----hhhHHHHH
Q 024137           17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLG--V-DAPVTQSAFAYFSLALVYGGVLL----YRRQRL----RVAWYWYL   85 (272)
Q Consensus        17 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~--~-~~p~~~~~~R~~~a~~~l~~~~~----~~~~~~----~~~~~~~~   85 (272)
                      +|.+.|.++++..|++.+.....-|+....+  . .-+....+ --+...++++|.+.    ....+.    ..+...+.
T Consensus       243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGf-vGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv  321 (416)
T KOG2765|consen  243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGF-VGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVV  321 (416)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHH-HHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeee
Confidence            4778999999999999999988887765432  1 22333333 22344444554332    122221    12233466


Q ss_pred             HHHHHHHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccC
Q 024137           86 LLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA  156 (272)
Q Consensus        86 ~~g~~~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~  156 (272)
                      +.++++... .+++.+|.-.+++-.+++=.+......++...++.++++|..+++|.+..++|.+.+...+.
T Consensus       322 ~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~  393 (416)
T KOG2765|consen  322 FNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE  393 (416)
T ss_pred             HhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence            777777777 99999999999999999877777777888888888999999999999999999999887663

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=96.19  E-value=0.0072  Score=52.03  Aligned_cols=170  Identities=17%  Similarity=0.155  Sum_probs=109.8

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH-hcchhhhhHHHHHHHHHHHHHHHHHHHHHhhc-chhhHHHHhhhhhH
Q 024137           41 SLIADLGVDAPVTQSAFAYFSLALVYGGVLLY-RRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQF-SSITSVTLLDCCTI  118 (272)
Q Consensus        41 ~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~l~~~al~~-~~a~~a~~l~~~~P  118 (272)
                      -.+.++...+--.+++..++..+.--+++.-+ ...+.+-+.+.+...-......+.+-++|+++ ++...-.+..+..+
T Consensus        23 E~L~~~~pgsgNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsl  102 (330)
T KOG1583|consen   23 ELLVRNEPGSGNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSL  102 (330)
T ss_pred             HHHHHhCCCCeeehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcH
Confidence            44444332233456777776555444433211 11122334555555544444447777888885 56666667788999


Q ss_pred             HHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCC------CC---CC---chhHHHHHHHHHHHHHHHHHH
Q 024137          119 AWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGG------GG---SR---PLLGDVLVIAGTIFFATSNVG  186 (272)
Q Consensus       119 v~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~------~~---~~---~~~G~~~~l~a~~~~a~~~v~  186 (272)
                      +.++++.+++.|+|-+.+|+.++.+..+|+++-...+..|...      .+   ++   ...|..+...|.+.-|.-.++
T Consensus       103 l~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiy  182 (330)
T KOG1583|consen  103 LANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIY  182 (330)
T ss_pred             HHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999876654322111      01   11   157888888888888888888


Q ss_pred             HhhhccC--CChHHHHHHHHHHHHHH
Q 024137          187 EEFFVKK--KDRVEVVCMIGVYGLLV  210 (272)
Q Consensus       187 ~k~~~~~--~~~~~~~~~~~~~g~i~  210 (272)
                      +++..++  .++.+.+.+.-......
T Consensus       183 qE~~Y~kyGKh~~EalFytH~LsLP~  208 (330)
T KOG1583|consen  183 QETTYQKYGKHWKEALFYTHFLSLPL  208 (330)
T ss_pred             HHHHHHHhcCChHHHHHHHHHhccch
Confidence            8866554  56777777766544333

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.16  E-value=0.071  Score=46.64  Aligned_cols=136  Identities=14%  Similarity=0.045  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcc---------hhhhhHHHHHHHH
Q 024137           18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ---------RLRVAWYWYLLLG   88 (272)
Q Consensus        18 ~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~---------~~~~~~~~~~~~g   88 (272)
                      |...|+.+...--++=+.+......+.++-..++..+.+.--+...+.-...+...+.         ..++-++.+++.+
T Consensus       169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s  248 (327)
T KOG1581|consen  169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS  248 (327)
T ss_pred             CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence            3344544433333333344444455554556778887776555555544444332221         1123378899999


Q ss_pred             HHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcc
Q 024137           89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL  153 (272)
Q Consensus        89 ~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~  153 (272)
                      .++..++.+.++-++.-++-+-+.+..+--+++++++.+.++.+++..||.|+.+.+.|+.+=..
T Consensus       249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~  313 (327)
T KOG1581|consen  249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEIL  313 (327)
T ss_pred             HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHH
Confidence            99999988888888888888888888899999999999999999999999999999998877544

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=96.05  E-value=0.1  Score=40.85  Aligned_cols=54  Identities=20%  Similarity=0.221  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcc-------CCChHHHHHHHHHHHHHHHHHHHHHhhccc
Q 024137          169 GDVLVIAGTIFFATSNVGEEFFVK-------KKDRVEVVCMIGVYGLLVSAVQLSILELKS  222 (272)
Q Consensus       169 G~~~~l~a~~~~a~~~v~~k~~~~-------~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~  222 (272)
                      |.++++.|.++.|++.++.|+..+       +.++.+...+....+.+.++++....|.+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~   61 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQ   61 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            678999999999999999998743       468999999999999999875556666544

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=95.97  E-value=0.32  Score=43.90  Aligned_cols=138  Identities=14%  Similarity=0.039  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhcCCCChHHHHHHHHH---HHHHHHH-HHHH---Hhcchh---
Q 024137           15 VTLRTLYLLFLGQLVSFTLALMSFT-------SSLIADLGVDAPVTQSAFAYF---SLALVYG-GVLL---YRRQRL---   77 (272)
Q Consensus        15 ~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~l~~~~~~~p~~~~~~R~~---~a~~~l~-~~~~---~~~~~~---   77 (272)
                      ++++..||+...++..+..+...+.       ..... ..+.+|.....-.+.   .+.++.- .++.   +++++.   
T Consensus       168 ~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~-~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~  246 (345)
T PRK13499        168 EEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAA-ALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLK  246 (345)
T ss_pred             cccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhh-hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccc
Confidence            4578899999999999888777632       22211 134455554444443   3333332 2222   121211   


Q ss_pred             --h----hhHHHH----HHHHHHHHHHHHHHHHHhhcchhhHHHH---hh-hhhHHHHHHHHHHHhcccch------hhH
Q 024137           78 --R----VAWYWY----LLLGFVDVQGNFLVNKAYQFSSITSVTL---LD-CCTIAWAIVLTWLFLGTRYS------LWQ  137 (272)
Q Consensus        78 --~----~~~~~~----~~~g~~~~~~~~l~~~al~~~~a~~a~~---l~-~~~Pv~~~lls~~~~~er~s------~~~  137 (272)
                        +    +.+.+-    .+.|++....+.++..+-+..+.+.+..   +. ++..++..+-.. ++||+=+      +.-
T Consensus       247 ~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l  325 (345)
T PRK13499        247 ADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVL  325 (345)
T ss_pred             hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHH
Confidence              1    112233    4555555555777777777765544433   54 566677777777 5999877      556


Q ss_pred             HHHHHHHHhhhhhhccc
Q 024137          138 LLGAALCVLGLGLVLLS  154 (272)
Q Consensus       138 ~~gi~l~~~Gv~ll~~~  154 (272)
                      ++|+++.+.|..++...
T Consensus       326 ~~G~vliI~g~~lig~~  342 (345)
T PRK13499        326 SLGCVVIILAANIVGLG  342 (345)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            78888888888887654

>TIGR00803 nst UDP-galactose transporter

Probab=95.76  E-value=0.17  Score=42.64  Aligned_cols=86  Identities=17%  Similarity=0.132  Sum_probs=55.9

Q ss_pred             HHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccC--------------------CCCCCCCCCchh
Q 024137          109 SVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA--------------------GGDGGGGSRPLL  168 (272)
Q Consensus       109 ~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~--------------------~~~~~~~~~~~~  168 (272)
                      ......+..++++++....+.+||.+..|+++.++...|+......+.                    .++.....+...
T Consensus         6 a~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~~~   85 (222)
T TIGR00803         6 IHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPVV   85 (222)
T ss_pred             chHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccHHH
Confidence            344455677777777777777777777777777777777664222211                    000011123467


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCC
Q 024137          169 GDVLVIAGTIFFATSNVGEEFFVKKK  194 (272)
Q Consensus       169 G~~~~l~a~~~~a~~~v~~k~~~~~~  194 (272)
                      |....+.+..+-++..++.++..|+.
T Consensus        86 g~~~~l~a~~~~~~~~~y~e~~~k~~  111 (222)
T TIGR00803        86 GLSAVLSALLSSGFAGVYFEKILKDG  111 (222)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHcccCC
Confidence            88888888888889999999876654

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=95.63  E-value=0.029  Score=41.93  Aligned_cols=79  Identities=20%  Similarity=0.166  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 024137          178 IFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKVI  257 (272)
Q Consensus       178 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~k~~  257 (272)
                      ++||.+.+..|+..++.|+.....+....+.+ +.+.....+..+....+........+.+. ++....+.++...+|+.
T Consensus         1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGL-LGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhc-cceehHHHHHHHHHHhc
Confidence            47899999999999999999999999999987 54333333332212222222222222222 33455666677778886


Q ss_pred             h
Q 024137          258 L  258 (272)
Q Consensus       258 ~  258 (272)
                      +
T Consensus        79 ~   79 (126)
T PF00892_consen   79 S   79 (126)
T ss_pred             c
Confidence            5

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.07  E-value=0.22  Score=42.16  Aligned_cols=75  Identities=16%  Similarity=0.240  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccc
Q 024137           80 AWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLS  154 (272)
Q Consensus        80 ~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~  154 (272)
                      .++.+.+.++.+..++++.+.-..+-++-.-+++..+--+|+.+.|.++++..++.+||+|..+.+.|...=..+
T Consensus       240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~  314 (337)
T KOG1580|consen  240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVD  314 (337)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhc
Confidence            366778888877777999999999999999999999999999999999999999999999999999887664433

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.05  E-value=0.016  Score=50.96  Aligned_cols=71  Identities=24%  Similarity=0.428  Sum_probs=62.8

Q ss_pred             HHHHHHHHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           85 LLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        85 ~~~g~~~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      +..|.+.... ...-+.|+.+.|++..+.+-++..+..++++..++|||++....+|..++++|-..++.+.
T Consensus        67 Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha  138 (335)
T KOG2922|consen   67 WWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA  138 (335)
T ss_pred             HHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence            3455555555 8888899999999999999999999999999999999999999999999999999987765

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=94.32  E-value=1.5  Score=39.37  Aligned_cols=168  Identities=12%  Similarity=0.116  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH----Hh------cchhhhhHHHHHHH
Q 024137           18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL----YR------RQRLRVAWYWYLLL   87 (272)
Q Consensus        18 ~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~----~~------~~~~~~~~~~~~~~   87 (272)
                      +...|+++-.+.+++-++...=-|+..+   .+-...-....+. +-+..|.+.    ..      +......+....+.
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk~---WsWEs~Wlv~gi~-swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~   79 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKVKG---WSWESYWLVQGIF-SWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLF   79 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhcCC---ccHHHHHHHHHHH-HHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence            4566777777777766655555555542   2222221112222 222333322    11      01112235566788


Q ss_pred             HHHHHHHHHHHHHHhhcchhhHHHH-hhhhhHHHHHHHHHHHhc-------ccchhhHHHHHHHHHhhhhhhccccCCCC
Q 024137           88 GFVDVQGNFLVNKAYQFSSITSVTL-LDCCTIAWAIVLTWLFLG-------TRYSLWQLLGAALCVLGLGLVLLSDAGGD  159 (272)
Q Consensus        88 g~~~~~~~~l~~~al~~~~a~~a~~-l~~~~Pv~~~lls~~~~~-------er~s~~~~~gi~l~~~Gv~ll~~~~~~~~  159 (272)
                      |++.......|=.+++|...+...- ...+.-.+-.++-.++.+       ++-....++|+.++++|+++....+..++
T Consensus        80 G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke  159 (344)
T PF06379_consen   80 GVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE  159 (344)
T ss_pred             HHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh
Confidence            8888777888889999998888664 456777777676555433       33345788999999999999866543111


Q ss_pred             -----CCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 024137          160 -----GGGGSRPLLGDVLVIAGTIFFATSNVGEEF  189 (272)
Q Consensus       160 -----~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~  189 (272)
                           +..+.+..+|.+.++.+++.-|+.+.-.+.
T Consensus       160 ~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~a  194 (344)
T PF06379_consen  160 KELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDA  194 (344)
T ss_pred             hhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence                 111223469999999999988888876654

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=94.25  E-value=1.9  Score=37.05  Aligned_cols=127  Identities=20%  Similarity=0.191  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH-Hhcchhh-----hhH-HHHHHHH
Q 024137           16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL-YRRQRLR-----VAW-YWYLLLG   88 (272)
Q Consensus        16 ~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~-~~~~~~~-----~~~-~~~~~~g   88 (272)
                      ..+...|++.....+++-+..+...-++.|.++.+.......=+..+.++.+.... ..+....     ..+ ...+..-
T Consensus       109 ~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i  188 (244)
T PF04142_consen  109 NQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVI  188 (244)
T ss_pred             cchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHH
Confidence            34678899888888888888888887777655555555444334444444433332 2221111     111 1122222


Q ss_pred             HHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHH
Q 024137           89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAA  142 (272)
Q Consensus        89 ~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~  142 (272)
                      +.....-.+.-.-++|.+.-.=..-.+...+.+.+++..+++.+++....+|..
T Consensus       189 ~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~  242 (244)
T PF04142_consen  189 FLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA  242 (244)
T ss_pred             HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence            223333445556788888877777788899999999999999999998887764

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.48  E-value=0.5  Score=40.95  Aligned_cols=144  Identities=12%  Similarity=0.099  Sum_probs=89.2

Q ss_pred             hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchh-------hhhH--
Q 024137           12 RSHVTLRT-LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRL-------RVAW--   81 (272)
Q Consensus        12 ~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~-------~~~~--   81 (272)
                      ++|+++|+ .+|+.+.-.+-++=+..+=..-+..+....+...+.++-+.++.+.++......+...       ..++  
T Consensus       180 Ds~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~t  259 (367)
T KOG1582|consen  180 DSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRT  259 (367)
T ss_pred             ccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhH
Confidence            34556666 5666554444444444444444444444445566778888888777665544332211       1122  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           82 -YWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        82 -~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                       ....+.+..+..+......=.+.-++..++.+...---.+.++|+++|.+..+.+-.-+..+.+.|+.+-..++
T Consensus       260 yGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  260 YGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence             22333333333332222222334477778888888888999999999999999999999999999999988776

>PRK02237 hypothetical protein; Provisional

Probab=93.45  E-value=2  Score=31.84  Aligned_cols=54  Identities=22%  Similarity=0.504  Sum_probs=41.5

Q ss_pred             hhc-chhhHHHHhh-hhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137          102 YQF-SSITSVTLLD-CCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus       102 l~~-~~a~~a~~l~-~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      +|- .+.+.+-.-+ ....+.+.+..+.+-|+||++..++|..++++|+.++.+.+
T Consensus        52 l~p~~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p  107 (109)
T PRK02237         52 LQPDAAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP  107 (109)
T ss_pred             cCCchhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence            554 4455555433 56666777888889999999999999999999999986643

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.89  E-value=1.2  Score=39.36  Aligned_cols=136  Identities=10%  Similarity=-0.026  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhc--c-------hhh--hhHHHHHHHH
Q 024137           20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR--Q-------RLR--VAWYWYLLLG   88 (272)
Q Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~--~-------~~~--~~~~~~~~~g   88 (272)
                      .+|..+.....+..+......|+-.+.....-..+.++.-+.+.+.+........  +       ...  ..+-...+.+
T Consensus       156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc  235 (314)
T KOG1444|consen  156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC  235 (314)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence            3456666666555555555555554444444455566665555544433321111  1       111  1144566777


Q ss_pred             HHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        89 ~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      +++...+++-++..++.++...++.-...-..+.+...++.+++.++...+|+.+++.|-.+-....
T Consensus       236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~  302 (314)
T KOG1444|consen  236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT  302 (314)
T ss_pred             HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence            7788889999999999999998888877777777778888889999999999999999988765543

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=91.95  E-value=1.6  Score=32.21  Aligned_cols=55  Identities=25%  Similarity=0.542  Sum_probs=43.3

Q ss_pred             HhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137          101 AYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus       101 al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      .+|-.+.+.+-.- -....+.+.+..+.+-|+||++..++|..++++|+.++.+.+
T Consensus        50 Tl~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P  105 (107)
T PF02694_consen   50 TLQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP  105 (107)
T ss_pred             hcCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence            3555556665543 356677788888889999999999999999999999998754

; GO: 0016020 membrane

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=90.58  E-value=8.5  Score=34.12  Aligned_cols=132  Identities=17%  Similarity=0.151  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCChHHHHHHHH-HHHHHHHHHHHHHhcch-------hh-h----hHH-
Q 024137           20 LYLLFLGQLVSFTLALMSFTSSLIADL---GVDAPVTQSAFAY-FSLALVYGGVLLYRRQR-------LR-V----AWY-   82 (272)
Q Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~~l~~~---~~~~p~~~~~~R~-~~a~~~l~~~~~~~~~~-------~~-~----~~~-   82 (272)
                      ..|-.+...+.++-+.-+.+++++.++   +..+|....+.-- .+...++...+..++..       ++ .    .++ 
T Consensus       163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv  242 (349)
T KOG1443|consen  163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV  242 (349)
T ss_pred             ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence            345555666666666667777777643   2345665544332 33333222223334321       11 1    122 


Q ss_pred             --HHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhh
Q 024137           83 --WYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV  151 (272)
Q Consensus        83 --~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll  151 (272)
                        ...+.|.+.+..-...+.=+..++.-+.++..-..=+.+.+++.++.+|+++..+|.|..++..|+..=
T Consensus       243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence              222223333333334455566777777777666778889999999999999999999999999998775

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=89.67  E-value=0.21  Score=42.55  Aligned_cols=66  Identities=15%  Similarity=0.157  Sum_probs=55.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHH
Q 024137           77 LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAA  142 (272)
Q Consensus        77 ~~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~  142 (272)
                      ..+.-..-.+.|+....+|.+++.|-+....+++=.+..+..+...+-..+++|||=+++++..+.
T Consensus       205 ~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~  270 (288)
T COG4975         205 FNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVI  270 (288)
T ss_pred             hHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhh
Confidence            334445678899988888999999999888888778888888999999999999999999876544

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=88.15  E-value=4.8  Score=31.32  Aligned_cols=51  Identities=12%  Similarity=-0.002  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCC-hHHHHHHHHHHHHHHHHHHHHHhhc
Q 024137          170 DVLVIAGTIFFATSNVGEEFFVKKKD-RVEVVCMIGVYGLLVSAVQLSILEL  220 (272)
Q Consensus       170 ~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~g~i~~~i~~~~~~~  220 (272)
                      .++++.++..-+....++.+..++.+ |.......+..|.+.+.+.....++
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~   54 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGR   54 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            57788999999999999999877765 9999999999999988754544444

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=87.73  E-value=2.9  Score=35.33  Aligned_cols=104  Identities=9%  Similarity=0.080  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--hcch------hhhh-HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHH
Q 024137           52 VTQSAFAYFSLALVYGGVLLY--RRQR------LRVA-WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAI  122 (272)
Q Consensus        52 ~~~~~~R~~~a~~~l~~~~~~--~~~~------~~~~-~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~  122 (272)
                      ....++.-+++.+++..+-..  .|.+      .+.+ .....+.|+...+..++--+.++.++....+++-.+.-.-.+
T Consensus       186 ~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~a  265 (309)
T COG5070         186 FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIA  265 (309)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHH
Confidence            344566767777666544322  2221      1222 334566666666668888888999999999999888888888


Q ss_pred             HHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137          123 VLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus       123 lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      +-+.++++|..+...+.++.+++...++-....
T Consensus       266 laGlvffdap~nf~si~sillGflsg~iYavak  298 (309)
T COG5070         266 LAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAK  298 (309)
T ss_pred             HhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999998888887766655443

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=87.59  E-value=9.5  Score=33.46  Aligned_cols=138  Identities=16%  Similarity=0.088  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHH----HH-hcchh-------hhhH
Q 024137           14 HVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVL----LY-RRQRL-------RVAW   81 (272)
Q Consensus        14 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~----~~-~~~~~-------~~~~   81 (272)
                      +|.++...|.++.+++.+..+.--..-.+..++..++|...+.+.-+.+..++....    .. ..+..       ..+|
T Consensus       169 ~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~  248 (372)
T KOG3912|consen  169 TDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDW  248 (372)
T ss_pred             cccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhH
Confidence            577888999999998888888776666555556788999998887766543332221    11 11000       1111


Q ss_pred             H------------HHHHHHHHHHHH--HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhh
Q 024137           82 Y------------WYLLLGFVDVQG--NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLG  147 (272)
Q Consensus        82 ~------------~~~~~g~~~~~~--~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~G  147 (272)
                      .            .+...|..-..+  |+.-..--++.++++=.++...-..+.=+++.....|+....|+.|..+-+.|
T Consensus       249 ~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~G  328 (372)
T KOG3912|consen  249 GDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMG  328 (372)
T ss_pred             HHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1            122222222122  22222223456777777888777777777888888999999999999999999


Q ss_pred             hhhh
Q 024137          148 LGLV  151 (272)
Q Consensus       148 v~ll  151 (272)
                      +++-
T Consensus       329 i~lY  332 (372)
T KOG3912|consen  329 IILY  332 (372)
T ss_pred             HHHH
Confidence            8874

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=85.34  E-value=7.3  Score=34.06  Aligned_cols=138  Identities=14%  Similarity=0.033  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH---Hhcchh-----------hhhH
Q 024137           16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL---YRRQRL-----------RVAW   81 (272)
Q Consensus        16 ~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~---~~~~~~-----------~~~~   81 (272)
                      ......|+.+..++-+.-+-++.......++.+-+|-...++-..+..+..+....   .++...           ....
T Consensus       159 ~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~v  238 (330)
T KOG1583|consen  159 FFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKV  238 (330)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccc
Confidence            34667888888888888888888887766554556777778777776655432211   011000           0011


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh----cchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcc
Q 024137           82 YWYLLLGFVDVQGNFLVNKAYQ----FSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL  153 (272)
Q Consensus        82 ~~~~~~g~~~~~~~~l~~~al~----~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~  153 (272)
                      +.....-+.+...++....++.    .+++-+++++..+--++..++|.+.++...+++.|+|..+.++|.++...
T Consensus       239 P~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~  314 (330)
T KOG1583|consen  239 PSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN  314 (330)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            1122222223333444444433    34555566777888999999999999999999999999999999988754

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.33  E-value=1.6  Score=37.99  Aligned_cols=135  Identities=15%  Similarity=0.143  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcc--------hh-h-hhHHHHHHHH
Q 024137           19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ--------RL-R-VAWYWYLLLG   88 (272)
Q Consensus        19 ~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~--------~~-~-~~~~~~~~~g   88 (272)
                      -++|+++|+.+.+..+..++..|+....-+..-+.++++.-+.+.++.+|.+...+.        +. . +-|....+.|
T Consensus       183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg  262 (347)
T KOG1442|consen  183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG  262 (347)
T ss_pred             chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence            478999999999999999998886654334456677888888888888887765432        11 1 1133344555


Q ss_pred             HHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcc
Q 024137           89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL  153 (272)
Q Consensus        89 ~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~  153 (272)
                      ++++..++.-.+=.+-+++-+--+--.-...-=.+++..+++|.-+...|-+-++.+.|-.+-.+
T Consensus       263 lfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~  327 (347)
T KOG1442|consen  263 LFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTL  327 (347)
T ss_pred             HHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHH
Confidence            65555543222222233332222212223333457788899999999999887777777666544

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=80.45  E-value=21  Score=26.33  Aligned_cols=55  Identities=24%  Similarity=0.451  Sum_probs=40.3

Q ss_pred             Hhhcch-hhHHHH-hhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137          101 AYQFSS-ITSVTL-LDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus       101 al~~~~-a~~a~~-l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      .+|+.+ .+.+-. --......+.+..++.=|.||++..|.|..++++|+.++.+.+
T Consensus        50 T~~~~~a~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p  106 (109)
T COG1742          50 TLQPAAAFGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP  106 (109)
T ss_pred             HcCCchhhhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence            344443 444433 2345666677777888899999999999999999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	272
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.68
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.54

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.68  E-value=1.6e-07  Score=69.66  Aligned_cols=70  Identities=17%  Similarity=0.282  Sum_probs=61.7

Q ss_pred             HHHHHHHHH-HHHHHHHhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           86 LLGFVDVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        86 ~~g~~~~~~-~~l~~~al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      +.+...... +.++..++++.|.+.+..+ ..+.|+++.+++++++||+++..|++|+.+.+.|+.++...+
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            455555555 7888899999999999988 899999999999999999999999999999999999987644

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.54  E-value=2.8e-07  Score=70.85  Aligned_cols=70  Identities=17%  Similarity=0.282  Sum_probs=51.1

Q ss_pred             HHHHHHHHH-HHHHHHHhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137           86 LLGFVDVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD  155 (272)
Q Consensus        86 ~~g~~~~~~-~~l~~~al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~  155 (272)
                      +.+++.... ++++..++++.|++.+..+ .++.|+++.+++++++||+++..+++|+++.++|+.++...+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            455555555 8889999999999999988 899999999999999999999999999999999999987644

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00