Citrus Sinensis ID: 024149

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVRLIYSFHYPKIRS
cccccHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHEEEEEEccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccccccEEEEEEEcccccc
cccccHHEEEcccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHEccccccccEEEEEcHHHHHHHHc
MEGKEEDVRLGankfaerqpigtaaqtqdgkdyvepppaplfepgelkswsFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTagisgghinpaVTLGLFLARKLSLTRALFYMVMQCLGAICgagvvkgfmgagqygrlagganvvahgytkgdglgaEIIGTFVLVYTVFSatdakrsardshvpilaplpIGFAVFLVHLAtipitgtginparslGAAIiynkdrgwddHVRLIYSFHYPKIRS
megkeedvrlgankfaerqpigtaaqtqdgkdyVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYnkdrgwddHVRLIYsfhypkirs
MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVRLIYSFHYPKIRS
********************************************GELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVRLIYSFHYP****
**************************************APLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVRLIYSFHYPKIR*
********RLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVRLIYSFHYPKIRS
******************************KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVRLIYSFHYPKIRS
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
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MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVRLIYSFHYPKIRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query272 2.2.26 [Sep-21-2011]
Q7XSQ9288 Probable aquaporin PIP1-2 yes no 0.944 0.892 0.879 1e-129
Q9XF59289 Aquaporin PIP1-2 OS=Zea m N/A no 0.944 0.889 0.864 1e-127
Q6EU94289 Aquaporin PIP1-1 OS=Oryza no no 0.944 0.889 0.864 1e-127
Q39196287 Probable aquaporin PIP1-4 yes no 0.941 0.891 0.872 1e-127
P25794289 Probable aquaporin PIP-ty N/A no 0.948 0.892 0.853 1e-126
Q06611286 Aquaporin PIP1-2 OS=Arabi no no 0.937 0.891 0.856 1e-125
Q9AR14288 Aquaporin PIP1-5 OS=Zea m N/A no 0.944 0.892 0.852 1e-125
Q08451286 Probable aquaporin PIP-ty N/A no 0.933 0.888 0.856 1e-124
Q9AQU5292 Aquaporin PIP1-3/PIP1-4 O N/A no 0.944 0.880 0.854 1e-122
Q9SXF8288 Aquaporin PIP 1-3 OS=Oryz no no 0.944 0.892 0.833 1e-121
>sp|Q7XSQ9|PIP12_ORYSJ Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3 Back     alignment and function desciption
 Score =  460 bits (1184), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/258 (87%), Positives = 237/258 (91%), Gaps = 1/258 (0%)

Query: 1   MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEF 60
           MEGKEEDVRLGANKF+ERQPIGTAAQ  D KDY EPPPAPLFEPGELKSWSFYRAGIAEF
Sbjct: 1   MEGKEEDVRLGANKFSERQPIGTAAQGSDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEF 60

Query: 61  IATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVT 120
           +ATFLFLYI+VLTVMGV  S +KC+TVGIQGIAW+FGGMIF LVYCTAGISGGHINPAVT
Sbjct: 61  MATFLFLYITVLTVMGVNNSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVT 120

Query: 121 LGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDG 180
            GLFLARKLSLTRALFYMVMQCLGAICGAGVVKGF   G Y    GGANVVA GYTKGDG
Sbjct: 121 FGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQ-KGLYETTGGGANVVAPGYTKGDG 179

Query: 181 LGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 240
           LGAEI+GTF+LVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA
Sbjct: 180 LGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 239

Query: 241 RSLGAAIIYNKDRGWDDH 258
           RSLGAAIIYN+   WDDH
Sbjct: 240 RSLGAAIIYNRGHAWDDH 257
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9XF59|PIP12_MAIZE Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1 Back     alignment and function description
>sp|Q6EU94|PIP11_ORYSJ Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q39196|PIP14_ARATH Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1 Back     alignment and function description
>sp|P25794|PIP2_PEA Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2 Back     alignment and function description
>sp|Q06611|PIP12_ARATH Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1 Back     alignment and function description
>sp|Q9AR14|PIP15_MAIZE Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1 Back     alignment and function description
>sp|Q08451|PIP1_SOLLC Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|Q9AQU5|PIP13_MAIZE Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SXF8|PIP13_ORYSJ Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query272
256568419288 PIP protein [Gossypium hirsutum] gi|2565 0.948 0.895 0.899 1e-134
255571849288 Aquaporin PIP1.3, putative [Ricinus comm 0.948 0.895 0.910 1e-132
300793590288 TPA_inf: aquaporin PIP1;7 [Gossypium hir 0.948 0.895 0.895 1e-132
255571847287 Aquaporin PIP1.3, putative [Ricinus comm 0.948 0.898 0.906 1e-132
378408539290 plasma intrinsic protein PIP1.1 [Heliant 0.948 0.889 0.892 1e-131
335954641289 plasma membrane intrinsic protein 1 [Jat 0.948 0.892 0.903 1e-131
219523020287 plasma membrane intrinsic protein 1 [Pop 0.948 0.898 0.891 1e-131
57336888278 putative plasma membrane intrinsic prote 0.948 0.928 0.887 1e-130
224101113287 aquaporin, MIP family, PIP subfamily [Po 0.948 0.898 0.887 1e-130
238814670290 plasma intrinsic protein 1;2 [Juglans re 0.948 0.889 0.9 1e-130
>gi|256568419|gb|ACU87553.1| PIP protein [Gossypium hirsutum] gi|256568421|gb|ACU87554.1| PIP protein [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/258 (89%), Positives = 243/258 (94%)

Query: 1   MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEF 60
           MEGKEEDVRLGANKF+ERQPIGTAAQ+QD KDY EPPPAPLFEP EL SWSFYRAGIAEF
Sbjct: 1   MEGKEEDVRLGANKFSERQPIGTAAQSQDDKDYTEPPPAPLFEPSELTSWSFYRAGIAEF 60

Query: 61  IATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVT 120
           +ATFLFLYISVLTVMGV+K  TKC+TVGIQGIAWAFGGMIF LVYCTAGISGGHINPAVT
Sbjct: 61  VATFLFLYISVLTVMGVLKDKTKCTTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 120

Query: 121 LGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDG 180
            GLFL RKLSLTRA++YMVMQCLGAICGAGVVKGFMG  +YG L GGAN V HGYTKGDG
Sbjct: 121 FGLFLGRKLSLTRAIYYMVMQCLGAICGAGVVKGFMGKTRYGALGGGANSVNHGYTKGDG 180

Query: 181 LGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 240
           LGAEI+GTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA
Sbjct: 181 LGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 240

Query: 241 RSLGAAIIYNKDRGWDDH 258
           RSLGAAII+NKD+GWDDH
Sbjct: 241 RSLGAAIIFNKDKGWDDH 258

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255571849|ref|XP_002526867.1| Aquaporin PIP1.3, putative [Ricinus communis] gi|38198152|emb|CAE53882.1| aquaporin [Ricinus communis] gi|223533766|gb|EEF35498.1| Aquaporin PIP1.3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|300793590|tpg|DAA33861.1| TPA_inf: aquaporin PIP1;7 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|255571847|ref|XP_002526866.1| Aquaporin PIP1.3, putative [Ricinus communis] gi|223533765|gb|EEF35497.1| Aquaporin PIP1.3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|378408539|gb|AFB83065.1| plasma intrinsic protein PIP1.1 [Helianthemum almeriense] Back     alignment and taxonomy information
>gi|335954641|gb|AEH76327.1| plasma membrane intrinsic protein 1 [Jatropha curcas] Back     alignment and taxonomy information
>gi|219523020|gb|ACL14797.1| plasma membrane intrinsic protein 1 [Populus alba x Populus tremula var. glandulosa] Back     alignment and taxonomy information
>gi|57336888|emb|CAH60719.1| putative plasma membrane intrinsic protein [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|224101113|ref|XP_002312147.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|118489357|gb|ABK96483.1| unknown [Populus trichocarpa x Populus deltoides] gi|222851967|gb|EEE89514.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|238814670|gb|ACR56611.1| plasma intrinsic protein 1;2 [Juglans regia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query272
TAIR|locus:2117939287 PIP1;5 "plasma membrane intrin 0.941 0.891 0.872 2e-118
TAIR|locus:2126026287 PIP1;4 "plasma membrane intrin 0.941 0.891 0.872 2.6e-118
TAIR|locus:2025391286 PIP1C "plasma membrane intrins 0.937 0.891 0.868 2.3e-117
TAIR|locus:2050649301 PIP1B "plasma membrane intrins 0.970 0.877 0.832 7.9e-117
TAIR|locus:2082822286 PIP1A "plasma membrane intrins 0.937 0.891 0.864 7.9e-117
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.867 0.842 0.751 1e-93
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.838 0.820 0.768 6.3e-92
TAIR|locus:2084031287 PIP2A "plasma membrane intrins 0.882 0.836 0.709 3.6e-89
TAIR|locus:2061773285 PIP2B "plasma membrane intrins 0.834 0.796 0.730 2e-88
TAIR|locus:2082642286 PIP2;5 "plasma membrane intrin 0.834 0.793 0.720 1.8e-87
TAIR|locus:2117939 PIP1;5 "plasma membrane intrinsic protein 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
 Identities = 225/258 (87%), Positives = 235/258 (91%)

Query:     1 MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEF 60
             MEGKEEDV +GANKF ERQPIGTAAQT+  KDY EPPPAP FEPGELKSWSFYRAGIAEF
Sbjct:     1 MEGKEEDVNVGANKFPERQPIGTAAQTES-KDYKEPPPAPFFEPGELKSWSFYRAGIAEF 59

Query:    61 IATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVT 120
             IATFLFLY++VLTVMGV ++   C++VGIQGIAWAFGGMIF LVYCTAGISGGHINPAVT
Sbjct:    60 IATFLFLYVTVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 119

Query:   121 LGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDG 180
              GLFLARKLSLTRALFY+VMQCLGAICGAGVVKGF   G Y    GGANVVAHGYTKG G
Sbjct:   120 FGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQ-PGLYQTNGGGANVVAHGYTKGSG 178

Query:   181 LGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 240
             LGAEI+GTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA
Sbjct:   179 LGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 238

Query:   241 RSLGAAIIYNKDRGWDDH 258
             RSLGAAIIYNKD  WDDH
Sbjct:   239 RSLGAAIIYNKDHAWDDH 256
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA;RCA
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006096 "glycolysis" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2126026 PIP1;4 "plasma membrane intrinsic protein 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025391 PIP1C "plasma membrane intrinsic protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050649 PIP1B "plasma membrane intrinsic protein 1B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082822 PIP1A "plasma membrane intrinsic protein 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084031 PIP2A "plasma membrane intrinsic protein 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061773 PIP2B "plasma membrane intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082642 PIP2;5 "plasma membrane intrinsic protein 2;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XSQ9PIP12_ORYSJNo assigned EC number0.87980.94480.8923yesno
Q8LAA6PIP15_ARATHNo assigned EC number0.87200.94110.8919nono
P93004PIP27_ARATHNo assigned EC number0.74160.87860.8535nono
Q9SV31PIP25_ARATHNo assigned EC number0.70830.84920.8076nono
Q9SXF8PIP13_ORYSJNo assigned EC number0.83330.94480.8923nono
Q84RL7PIP21_MAIZENo assigned EC number0.73300.83450.7827N/Ano
Q9AQU5PIP13_MAIZENo assigned EC number0.85490.94480.8801N/Ano
Q9AR14PIP15_MAIZENo assigned EC number0.85270.94480.8923N/Ano
Q9ATM5PIP26_MAIZENo assigned EC number0.70330.83450.7881N/Ano
P61837PIP11_ARATHNo assigned EC number0.86430.93750.8916nono
Q08451PIP1_SOLLCNo assigned EC number0.85600.93380.8881N/Ano
P61838PIP11_VICFANo assigned EC number0.86430.93750.8916N/Ano
P42767PIP1_ATRCANo assigned EC number0.77050.84550.8156N/Ano
Q06611PIP12_ARATHNo assigned EC number0.85650.93750.8916nono
Q9ATN0PIP16_MAIZENo assigned EC number0.79210.93010.8547N/Ano
Q39196PIP14_ARATHNo assigned EC number0.87200.94110.8919yesno
Q41870PIP11_MAIZENo assigned EC number0.82550.94110.8919N/Ano
Q9XF59PIP12_MAIZENo assigned EC number0.86480.94480.8892N/Ano
Q9XF58PIP25_MAIZENo assigned EC number0.71190.86020.8210N/Ano
Q08733PIP13_ARATHNo assigned EC number0.86820.93750.8916yesno
Q9ATM8PIP22_MAIZENo assigned EC number0.71420.83450.7773N/Ano
P25794PIP2_PEANo assigned EC number0.85320.94850.8927N/Ano
Q9ATM4PIP27_MAIZENo assigned EC number0.71480.83450.7909N/Ano
Q7XLR1PIP26_ORYSJNo assigned EC number0.73910.83450.8049nono
Q9ATM6PIP24_MAIZENo assigned EC number0.71420.86760.8194N/Ano
Q9ATM7PIP23_MAIZENo assigned EC number0.71420.86760.8166N/Ano
Q6EU94PIP11_ORYSJNo assigned EC number0.86480.94480.8892nono
Q9ZVX8PIP28_ARATHNo assigned EC number0.75530.85290.8345nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0049030302
aquaporin, MIP family, PIP subfamily (287 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
pfam00230218 pfam00230, MIP, Major intrinsic protein 1e-85
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 6e-68
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 2e-60
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 8e-41
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 8e-27
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 4e-26
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 7e-25
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 2e-22
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 1e-20
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 4e-18
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 4e-15
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 3e-14
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 3e-13
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 4e-05
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 1e-04
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  254 bits (651), Expect = 1e-85
 Identities = 108/213 (50%), Positives = 134/213 (62%), Gaps = 13/213 (6%)

Query: 46  ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVY 105
           EL+S SF+RA IAEF+AT LF++  V + +GV K        G+  +A AFG  +F LVY
Sbjct: 1   ELRSVSFWRAVIAEFLATLLFVFFGVGSALGVKKL-----YGGLLAVALAFGLALFTLVY 55

Query: 106 CTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLA 165
           CT  ISG H+NPAVT  L + R++SL RA++Y++ Q LGAICGA ++KG     Q  R  
Sbjct: 56  CTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVTNGLQ--RAG 113

Query: 166 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLV 225
           G AN +A G   G     EII TF LVYTVF+ TD  R+    HV   APL IGFAVFL 
Sbjct: 114 GFANSLAPGVNAGQAFVVEIILTFQLVYTVFATTDDPRNGSLGHV---APLAIGFAVFLN 170

Query: 226 HLATIPITGTGINPARSLGAAIIYNKDRGWDDH 258
           HLA  P TG  +NPARS G A++  K   WDDH
Sbjct: 171 HLAGGPYTGASMNPARSFGPAVVLWK---WDDH 200

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 272
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00182283 putative aquaporin NIP4; Provisional 99.81
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.78
PLN00026298 aquaporin NIP; Provisional 99.78
PLN00183274 putative aquaporin NIP7; Provisional 99.77
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.77
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.74
PLN00184296 aquaporin NIP1; Provisional 99.72
PRK05420231 aquaporin Z; Provisional 99.67
PLN00166250 aquaporin TIP2; Provisional 99.66
PLN00027252 aquaporin TIP; Provisional 99.65
PLN00167256 aquaporin TIP5; Provisional 99.63
PTZ00016294 aquaglyceroporin; Provisional 99.62
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.61
COG0580241 GlpF Glycerol uptake facilitator and related perme 99.59
KOG0224316 consensus Aquaporin (major intrinsic protein famil 98.8
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=9.6e-49  Score=338.74  Aligned_cols=211  Identities=51%  Similarity=0.719  Sum_probs=186.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHH
Q 024149           46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFL  125 (272)
Q Consensus        46 ~~~~~~~~~~~~aE~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~v~~~i~~~~~~SGah~NPavTl~~~~  125 (272)
                      +.+.++.+|++++||++|++++|++|+++.....   .....+.+.+++.+|+.++..+++++++||||+|||||++.++
T Consensus         4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~---~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~   80 (238)
T KOG0223|consen    4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPK---YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAV   80 (238)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHH
Confidence            3456788999999999999999999988875543   1223467889999999999999999999999999999999999


Q ss_pred             hcCCCccchhHHhhhhhHHHHHHHHHHHHHhccccccccCCCcccccccCCccchhhHHHHHHHHHHHHHHH-hcccccc
Q 024149          126 ARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRS  204 (272)
Q Consensus       126 ~g~~~~~~~~~yi~aQ~lGa~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~E~~~T~iL~~~il~-~~~~~~~  204 (272)
                      .+++++.++..|+++|++|+++|+.+.+.+.+. .....+.+.+.+.++.+..|+++.|++.||+|++++++ ..|++++
T Consensus        81 ~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~  159 (238)
T KOG0223|consen   81 GGKISLFRAVAYIVAQLLGAIAGAALLKVVTPG-QYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS  159 (238)
T ss_pred             hCCCcHHHhHHHHHHHHHHHHHHHHHHheecCc-ccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc
Confidence            999999999999999999999999999999843 23333445567788899999999999999999999999 7777664


Q ss_pred             CCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCcceeEeeccccCCC
Q 024149          205 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVRLIYSFHYPKI  270 (272)
Q Consensus       205 ~~~~~~~~~~p~~ig~~v~~~~~~~~~~tG~~lNPAR~~gp~l~~~~~~~w~~~wvy~~g~~~~~~  270 (272)
                             .+.|+.||+++.+.+++.+++||++|||||+|||+++.+   .|++|||||+||.+|++
T Consensus       160 -------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~  215 (238)
T KOG0223|consen  160 -------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAI  215 (238)
T ss_pred             -------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHH
Confidence                   378999999999999999999999999999999999985   59999999999999875

>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-101
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-100
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-100
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-100
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-100
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 5e-34
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 5e-34
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 9e-30
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 2e-29
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 2e-29
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 2e-28
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 1e-25
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 2e-22
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 3e-22
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 1e-20
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 4e-20
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 5e-16
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 6e-16
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 2e-15
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 2e-15
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 2e-15
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 3e-15
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 4e-14
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 7e-14
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 3e-13
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 1e-11
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 1e-10
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 3e-10
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 1e-07
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 7e-05
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score =  362 bits (930), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/235 (76%), Positives = 195/235 (82%), Gaps = 1/235 (0%)
Query: 24  AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
           A   Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G  K    
Sbjct: 9   AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 68
Query: 84  CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCL 143
           C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+SL RAL YM+ QCL
Sbjct: 69  CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCL 128
Query: 144 GAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
           GAICG G+VK FM  G Y +  GGAN VA GY KG  LGAEIIGTFVLVYTVFSATD KR
Sbjct: 129 GAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 187
Query: 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDH 258
           SARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ WDD 
Sbjct: 188 SARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQ 242
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-120
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 1e-101
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 2e-92
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 6e-91
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 3e-89
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 6e-89
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 1e-88
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 2e-88
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 6e-86
2o9g_A234 Aquaporin Z; integral membrane protein, structural 2e-85
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 5e-67
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 2e-43
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 2e-04
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 9e-43
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 2e-04
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
 Score =  344 bits (885), Expect = e-120
 Identities = 179/243 (73%), Positives = 197/243 (81%), Gaps = 2/243 (0%)

Query: 17  ERQPIGTAAQT-QDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVM 75
             + +   AQ  Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+
Sbjct: 24  MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 83

Query: 76  GVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRAL 135
           G  K    C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+ L RAL
Sbjct: 84  GHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRAL 143

Query: 136 FYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTV 195
            YM+ QCLGAICG G+VK FM  G Y +  GGAN VA GY KG  LGAEIIGTFVLVYTV
Sbjct: 144 VYMIAQCLGAICGVGLVKAFMK-GPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTV 202

Query: 196 FSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGW 255
           FSATD KRSARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ W
Sbjct: 203 FSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVW 262

Query: 256 DDH 258
           DD 
Sbjct: 263 DDQ 265
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query272
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.81
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 99.73
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.73
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.72
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.71
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.71
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.7
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 99.7
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.69
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 99.68
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 99.68
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 99.63
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 99.61
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
Probab=100.00  E-value=3e-54  Score=386.50  Aligned_cols=239  Identities=73%  Similarity=1.228  Sum_probs=192.9

Q ss_pred             ccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccchhHHHHHHHHHHHHHHHHhcCC
Q 024149           31 KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGI  110 (272)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aE~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~v~~~i~~~~~~  110 (272)
                      |+.+++++.+..+.+|.++++++|++++||+||++|+|++++++.+.....++....+++.+++++|+.+++.+++++++
T Consensus        39 ~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~i  118 (304)
T 3cn5_A           39 KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGI  118 (304)
T ss_dssp             ----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEeecc
Confidence            56666666666777888899999999999999999999999888765433333344578889999999999999999999


Q ss_pred             CCcccChHHHHHHHHhcCCCccchhHHhhhhhHHHHHHHHHHHHHhccccccccCCCcccccccCCccchhhHHHHHHHH
Q 024149          111 SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFV  190 (272)
Q Consensus       111 SGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~lGa~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~E~~~T~i  190 (272)
                      ||||+|||||++.++.|+++|++++.||++|++||++|+++++.++ ++.++..+.+.+.+.++.+..++|+.|+++||+
T Consensus       119 SGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~-~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~Tfi  197 (304)
T 3cn5_A          119 SGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFV  197 (304)
T ss_dssp             TCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHTTTTCCCCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccCcccccCCCccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998 444555444555556678889999999999999


Q ss_pred             HHHHHHHhccccccCCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCcceeEeeccccCCC
Q 024149          191 LVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHVRLIYSFHYPKI  270 (272)
Q Consensus       191 L~~~il~~~~~~~~~~~~~~~~~~p~~ig~~v~~~~~~~~~~tG~~lNPAR~~gp~l~~~~~~~w~~~wvy~~g~~~~~~  270 (272)
                      |+++|+.++|+++...++..+.+.|+.||+++++++++++++||++||||||||||++++++.+|+++||||+||.+|.+
T Consensus       198 Lv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~WvywvgPiiGa~  277 (304)
T 3cn5_A          198 LVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAA  277 (304)
T ss_dssp             HHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCCcCceEEEeehHHHHHH
Confidence            99999998887664332222348999999999999999999999999999999999996545689999999999998754
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 272
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 7e-45
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 5e-04
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 5e-40
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 1e-34
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 5e-04
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 1e-30
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  149 bits (378), Expect = 7e-45
 Identities = 86/217 (39%), Positives = 121/217 (55%), Gaps = 13/217 (5%)

Query: 46  ELKSWSFYRAGIAEFIATFLFLYISVLTVMG----VVKSNTKCSTVGIQGIAWAFGGMIF 101
           E K   F+RA +AEF+A  LF++IS+ + +G    +  + T  +      ++ AFG  I 
Sbjct: 4   EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIA 63

Query: 102 VLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQY 161
            L      ISG H+NPAVTLGL L+ ++S+ RA+ Y++ QC+GAI    ++ G   +   
Sbjct: 64  TLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD 123

Query: 162 GRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFA 221
             L  G N +A G   G GLG EIIGT  LV  V + TD +R      +    PL IGF+
Sbjct: 124 NSL--GLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRD----LGGSGPLAIGFS 177

Query: 222 VFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDH 258
           V L HL  I  TG GINPARS G+++I +    + DH
Sbjct: 178 VALGHLLAIDYTGCGINPARSFGSSVITH---NFQDH 211
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query272
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.67
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.66
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.65
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.61
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.1e-48  Score=338.31  Aligned_cols=213  Identities=25%  Similarity=0.354  Sum_probs=179.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhcCCCc
Q 024149           52 FYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSL  131 (272)
Q Consensus        52 ~~~~~~aE~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~v~~~i~~~~~~SGah~NPavTl~~~~~g~~~~  131 (272)
                      +.|+|++||+||++|+|+++++.......+.   ..+.+.+++++|+.++..+++++++||+|+|||||++.++.|+++|
T Consensus         2 l~~~~lAEflGT~~lvf~g~g~~~~~~~~~~---~~~~~~ia~~~g~~v~~~i~~~g~vSGaH~NPAVTla~~i~g~~~~   78 (254)
T d1fx8a_           2 LKGQCIAEFLGTGLLIFFGVGCVAALKVAGA---SFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDK   78 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCG
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccccCC---CcchHHHHHHHHHHHHHHHHHHhccccceEChhhHHHHHHcCCCcH
Confidence            5689999999999999999887765444332   3456788999999999999999999999999999999999999999


Q ss_pred             cchhHHhhhhhHHHHHHHHHHHHHhcccccccc----------------CCCcccccccCCccchhhHHHHHHHHHHHHH
Q 024149          132 TRALFYMVMQCLGAICGAGVVKGFMGAGQYGRL----------------AGGANVVAHGYTKGDGLGAEIIGTFVLVYTV  195 (272)
Q Consensus       132 ~~~~~yi~aQ~lGa~~a~~~~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~f~~E~~~T~iL~~~i  195 (272)
                      .+.+.|+++|++|+++|+++.+.++++...+..                +...+.+.++.+..++|+.|+++||+|++++
T Consensus        79 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~s~~~~~~~E~v~Tf~lv~~i  158 (254)
T d1fx8a_          79 RKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLI  158 (254)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccchhhcceeecCCCccccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999833211100                1112334566788999999999999999999


Q ss_pred             HHhccccccCCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHh----------CCCCCCCcceeEeecc
Q 024149          196 FSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIY----------NKDRGWDDHVRLIYSF  265 (272)
Q Consensus       196 l~~~~~~~~~~~~~~~~~~p~~ig~~v~~~~~~~~~~tG~~lNPAR~~gp~l~~----------~~~~~w~~~wvy~~g~  265 (272)
                      +.+.|++|+...   +.+.|+.||+.+.+.+++.+++||++||||||||||++.          .++++|+|+||||+||
T Consensus       159 l~~~~~~~~~~~---~~~~~l~iG~~v~~~~~~~g~~TG~s~NPAR~lgpai~~~~~~~~~~~~~~~~~~~~~wvy~vgP  235 (254)
T d1fx8a_         159 LALTDDGNGVPR---GPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGP  235 (254)
T ss_dssp             HHHHCTTSSSCC---GGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHHTT
T ss_pred             HHHhcCccCCCc---ccccchHHHHHHHHHHhhcccccccccChHHHHHHHHHHhhcccccccccCCCCCCeeehHhHHH
Confidence            999988775432   347899999999999999999999999999999999985          1346999999999999


Q ss_pred             ccCCC
Q 024149          266 HYPKI  270 (272)
Q Consensus       266 ~~~~~  270 (272)
                      .++.+
T Consensus       236 ~~Ga~  240 (254)
T d1fx8a_         236 IVGAI  240 (254)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure