Citrus Sinensis ID: 024162

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI
Secondary Structure (PSIPRED)
cccEEEEEEccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccEEEEEEEcccccccHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHcccEEcccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHcccccccccccccccccccccccccccccccccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccEEEEEEcccccccccHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEccccccccccccccccccccHcccccccccccccHHHHccHHHcccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHccccccccccccccccEEccccccccccccccccEEEEcccccHccc
Coil and Loop (DISEMBL)
MQSAVlalsedkilpVSAVLNAIRDLGdeaveqcdpQIITQasslsqlpvesfsIDTVLsissshelpgdqLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIqlksvvpaevvsfgvkgkkptwkigssfaikKAPKSLAklqvdddsdlidedtllteedlkkpqlpsvgdcevgstrkackNCICGRAEAEEKVEKLGLTMDqlknpqsacgscglgdafrcgtcpykglppfklgekvslssnflvadi
Flexible Loop (DISEMBL)
MQSAVlalsedkilpvSAVLNAIRDLGDEAVEQCDPQIITQasslsqlpVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYkkltsdkgdVDKAISALEGKLLLAGFLDAQRIQLKSVVPaevvsfgvkgkkptwkigssfaikkapkslaklqvdddsDLIDEDTLlteedlkkpqlpsvgdcevgstrKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGlppfklgekvslssnflvadi
Low Complexity Region (SEG)
MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVdddsdlidedtllteedlKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI
Disordered region (IsUnstruct)
*********EDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI********DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIK**************************************DCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSL*********
Disordered Region (DISOPRED)
*QSAVLALSEDKILPVSAVLNAIRDLGDE*VEQCDPQIIT*********VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKG******************SLAKLQVDDDSDLIDEDTLLTEEDL****************************************************SCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVA**
Disordered Region (DISEMBL)
********SEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI
Disordered Region (DISPRO)
**SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKP*************************SDLIDEDTLLTEEDLKKPQ**SVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNF*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
D1I234	272	Anamorsin homolog OS=Viti	yes	no	0.996	0.992	0.735	1e-107
A9PBH9	277	Anamorsin homolog OS=Popu	yes	no	0.996	0.974	0.705	1e-103
B9RBT0	274	Anamorsin homolog OS=Rici	N/A	no	0.985	0.974	0.686	1e-100
C6TKZ5	260	Anamorsin homolog OS=Glyc	no	no	0.959	1.0	0.642	8e-90
B7FNA9	265	Anamorsin homolog OS=Medi	N/A	no	0.959	0.981	0.638	1e-89
Q8L7Z3	272	Anamorsin homolog OS=Arab	yes	no	0.977	0.974	0.586	2e-80
Q7XQ97	265	Anamorsin homolog 1 OS=Or	yes	no	0.940	0.962	0.552	3e-71
A2XYW4	265	Anamorsin homolog 1 OS=Or	N/A	no	0.904	0.924	0.566	4e-71
B8ARI7	264	Anamorsin homolog 2 OS=Or	N/A	no	0.904	0.928	0.566	2e-70
Q7XPW7	264	Anamorsin homolog 2 OS=Or	yes	no	0.837	0.859	0.587	6e-70

>sp|D1I234|DRE2_VITVI Anamorsin homolog OS=Vitis vinifera GN=VIT_01s0010g01180 PE=3 SV=1

 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/272 (73%), Positives = 226/272 (83%), Gaps = 2/272 (0%)

Query: 1   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 60
           +Q++ LAL++ ++L +S VL+A+R L +  V+QCDP IITQASSLSQLPVES S+D V+S
Sbjct: 2   LQNSTLALTDHEVLSISTVLDAVRKLDNAGVDQCDPLIITQASSLSQLPVESSSLDIVIS 61

Query: 61  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 120
           I  S E P D+LL EISRVLKPGGT+LI K   S  G  D   S LE KLL+AGFL+AQ 
Sbjct: 62  ICRSLEFPCDKLLAEISRVLKPGGTVLIQKTSQSVAGIKDGETS-LERKLLMAGFLEAQA 120

Query: 121 IQLKSVVPAE-VVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEE 179
           IQLK VVP+E   SFG+K KKP+WKIGSSF+IKKA KSL K Q++DD DLIDED+LLTEE
Sbjct: 121 IQLKPVVPSEGAQSFGIKAKKPSWKIGSSFSIKKAEKSLPKFQIEDDMDLIDEDSLLTEE 180

Query: 180 DLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGD 239
           DLKKPQLP  GDCEVGSTRKACKNC CGRAE EEKVEKLGLTMDQL NPQSACGSCGLGD
Sbjct: 181 DLKKPQLPVDGDCEVGSTRKACKNCTCGRAEEEEKVEKLGLTMDQLNNPQSACGSCGLGD 240

Query: 240 AFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
           AFRCGTCPYKGLPPFKLG+KVSLS NFLVADI
Sbjct: 241 AFRCGTCPYKGLPPFKLGDKVSLSGNFLVADI 272

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.
Vitis vinifera (taxid: 29760)

>sp|A9PBH9|DRE2_POPTR Anamorsin homolog OS=Populus trichocarpa GN=POPTRDRAFT_761104 PE=2 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/272 (70%), Positives = 223/272 (81%), Gaps = 2/272 (0%)

Query: 1   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 60
           +Q++VLAL++D ++ +  V NA R++ ++ V+QCDPQIITQASSLS+LP+E  S+D V+ 
Sbjct: 7   LQNSVLALTDDTLISIGTVTNAAREVANDGVDQCDPQIITQASSLSKLPLEPSSVDIVIP 66

Query: 61  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 120
           I  S E PGD L++E+ RVLKPGGTILIY    S  G+ DKAIS L+ KLLL GFL+A+ 
Sbjct: 67  IFRSIEFPGDLLVKEMFRVLKPGGTILIYSSQQSVIGETDKAISGLQRKLLLGGFLEAEA 126

Query: 121 IQLKSVVPAEVV-SFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEE 179
           +Q K V  + VV SFGVK KKP+W IGSSFA+KK+ KS  K+Q DD SDLIDED+LLTEE
Sbjct: 127 LQPKPVGLSNVVCSFGVKAKKPSWNIGSSFALKKSIKSPVKVQNDDYSDLIDEDSLLTEE 186

Query: 180 DLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGD 239
           DLKKPQLP VGDCEVGSTRKACKNC CGRAE EEKV KLG TMDQL NPQSACGSCGLGD
Sbjct: 187 DLKKPQLPPVGDCEVGSTRKACKNCTCGRAEEEEKV-KLGPTMDQLSNPQSACGSCGLGD 245

Query: 240 AFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
           AFRCGTCPYKGLPPFKLGEKVSLS NFLVADI
Sbjct: 246 AFRCGTCPYKGLPPFKLGEKVSLSENFLVADI 277

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Populus trichocarpa (taxid: 3694)

>sp|B9RBT0|DRE2_RICCO Anamorsin homolog OS=Ricinus communis GN=RCOM_1680640 PE=3 SV=1

 Score =  365 bits (937), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/271 (68%), Positives = 220/271 (81%), Gaps = 4/271 (1%)

Query: 2   QSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI 61
           Q +VLA ++D +LPVS ++NA+R+LG+E  EQCDPQ++TQASSLS+LPV+S S+D V+SI
Sbjct: 7   QCSVLAFTDDAVLPVSTIVNAVRELGNEGAEQCDPQVVTQASSLSKLPVDSSSMDIVISI 66

Query: 62  SSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 121
             S +  GD L EEISRVLKPGGT+LIYK L S      +A+ ALE KLLLAGFL+AQ +
Sbjct: 67  CRSLQFQGDFLFEEISRVLKPGGTVLIYKTLQSVAEGTSEAVLALERKLLLAGFLEAQGL 126

Query: 122 QLKSVVPAEV-VSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEED 180
           QL S+  + +  SFG+K KKP+WKIGSSFA+KK+ K   K+ +DD  DLIDED+LLTEED
Sbjct: 127 QLNSLELSGLDHSFGMKAKKPSWKIGSSFALKKSTKGSVKVNLDD--DLIDEDSLLTEED 184

Query: 181 LKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDA 240
           +KKP +   GDCEVGSTRKACKNC CGRAEAEEKV KLG TM+QL NPQSACGSCGLGDA
Sbjct: 185 MKKPPIAPGGDCEVGSTRKACKNCTCGRAEAEEKV-KLGPTMEQLNNPQSACGSCGLGDA 243

Query: 241 FRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
           FRC TCPYKGLPPFKLGEKVSLS NFL ADI
Sbjct: 244 FRCSTCPYKGLPPFKLGEKVSLSGNFLAADI 274

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Ricinus communis (taxid: 3988)

>sp|C6TKZ5|DRE2_SOYBN Anamorsin homolog OS=Glycine max PE=2 SV=1

 Score =  330 bits (845), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 174/271 (64%), Positives = 205/271 (75%), Gaps = 11/271 (4%)

Query: 1   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 60
           M  AVLA ++  +LPVS V +AIR+LG+  +EQ DP ++T AS LS+LPV+S S+D V+ 
Sbjct: 1   MDGAVLACTDGAVLPVSQVFDAIRELGNGGLEQWDPLVLTSASLLSKLPVDSSSVDFVIL 60

Query: 61  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 120
           I  S + P DQL++EI RVLK  GTILI K   S  G  DK IS+LE KLLLAGF + Q 
Sbjct: 61  IWLSIDCPVDQLIQEILRVLKVDGTILIRKSSQSAVGSFDKIISSLENKLLLAGFTEPQV 120

Query: 121 IQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEED 180
           +Q          S G+K KKP+WKIGSSFA+KK  +S  K+Q+D DSDLIDED+ LTEED
Sbjct: 121 LQ----------SAGIKAKKPSWKIGSSFALKKVIRSSPKMQIDFDSDLIDEDSFLTEED 170

Query: 181 LKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDA 240
           LKKPQLP  GDCE+GSTRKACKNC CGRAE EEKV KLGLT +Q+ NPQSACG+CGLGDA
Sbjct: 171 LKKPQLPP-GDCEIGSTRKACKNCTCGRAEEEEKVLKLGLTTEQIDNPQSACGNCGLGDA 229

Query: 241 FRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
           FRC TCPYKGLP FKLGEKV+LS NFL ADI
Sbjct: 230 FRCSTCPYKGLPAFKLGEKVALSGNFLAADI 260

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Glycine max (taxid: 3847)

>sp|B7FNA9|DRE2_MEDTR Anamorsin homolog OS=Medicago truncatula PE=2 SV=1

 Score =  329 bits (844), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 173/271 (63%), Positives = 204/271 (75%), Gaps = 11/271 (4%)

Query: 1   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 60
           M  AVLA +++ +LPVS V +AIR+LG+E VE+ DP +IT ASSLS+ PVES S+D V+ 
Sbjct: 6   MYGAVLACTDEAVLPVSQVFDAIRELGNEGVEKLDPLVITSASSLSKFPVESSSVDLVVL 65

Query: 61  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 120
           I  S + P DQL +E+ RVLK GGT LI K   S  G  DK I  LE KLLLAGF + Q 
Sbjct: 66  IWKSLDFPIDQLTQEVLRVLKAGGTTLIRKSSQSAVGSGDKMIPDLENKLLLAGFSEIQA 125

Query: 121 IQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEED 180
           +Q          S  +K KKP+WKIGSSFA+KK  KS  K+Q+D DSDLIDE++LL+EED
Sbjct: 126 LQ----------SSVIKAKKPSWKIGSSFALKKVVKSSPKVQIDFDSDLIDENSLLSEED 175

Query: 181 LKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDA 240
           LKKP+LPS GDCE+G TRKACKNC CGRAE EEKV KLGLT +Q+ NPQSACGSCGLGDA
Sbjct: 176 LKKPELPS-GDCEIGPTRKACKNCSCGRAEEEEKVLKLGLTAEQINNPQSACGSCGLGDA 234

Query: 241 FRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
           FRC TCPYKGLP FK+GEKV+LS NFL ADI
Sbjct: 235 FRCSTCPYKGLPAFKMGEKVALSGNFLAADI 265

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Medicago truncatula (taxid: 3880)

>sp|Q8L7Z3|DRE2_ARATH Anamorsin homolog OS=Arabidopsis thaliana GN=At5g18400 PE=1 SV=1

 Score =  299 bits (765), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/271 (58%), Positives = 210/271 (77%), Gaps = 6/271 (2%)

Query: 2   QSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI 61
           Q  VLA+++D +LPVS+VL  +++LG E +E  DP IITQAS+++Q P+++ S++ VL+I
Sbjct: 7   QKTVLAVTDDVVLPVSSVLAIMKELGKEVIESFDPLIITQASTINQFPLDASSVEAVLAI 66

Query: 62  SSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 121
           S + + P D++  E SR+LKPGGT+ + K L  + G++ + I   + ++ LAGFL+ Q +
Sbjct: 67  SKTSDFPSDKICGEFSRILKPGGTVSVCKVLEGETGEIQQTI---QRRVTLAGFLEPQCL 123

Query: 122 QLKSV-VPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEED 180
            LKS+ +    +SFG+K KKP+WKIGSSFA+KK   +L K+ +DDD DLIDED+LLTEED
Sbjct: 124 DLKSIKLSTFSLSFGIKAKKPSWKIGSSFALKKPVTNLFKIDLDDDVDLIDEDSLLTEED 183

Query: 181 LKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDA 240
           L KPQLP    CE  +T+KACKNC+CGRAE EEK  KLGLT DQ++NPQS+CGSCGLGDA
Sbjct: 184 LMKPQLPVASGCE--TTKKACKNCVCGRAEIEEKAVKLGLTEDQIENPQSSCGSCGLGDA 241

Query: 241 FRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
           FRCGTCPYKGLPPFKLGEKV+LS NFL ADI
Sbjct: 242 FRCGTCPYKGLPPFKLGEKVTLSQNFLEADI 272

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XQ97|DRE21_ORYSJ Anamorsin homolog 1 OS=Oryza sativa subsp. japonica GN=Os04g0674400 PE=2 SV=2

 Score =  268 bits (685), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 148/268 (55%), Positives = 189/268 (70%), Gaps = 13/268 (4%)

Query: 6   LALSEDKILPVSAVLNAIRDLGDEA-VEQCDPQIITQASSLS-QLPVESFSIDTVLSISS 63
           LA++++  LP    L A+ DL   A V + +  +ITQ +SL  +LP +  S+ +VL++  
Sbjct: 9   LAVTDELALP----LRAVGDLAAAAGVSREEVVVITQCASLGGKLPFDDASVGSVLAVIK 64

Query: 64  SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQL 123
             E  GD  + EISRVLK GG +LI     S   D D   ++++ KLLL GF+D Q    
Sbjct: 65  KVENLGDLFITEISRVLKAGGMVLIQ----SSPSDQDPN-NSIQRKLLLGGFVDVQASAA 119

Query: 124 KSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLKK 183
            S      V+  +K KK +W +GSSF +KKA K L K+Q+DDDS+LIDED+LLTE+DLKK
Sbjct: 120 SSQDSEHSVT--IKAKKVSWSLGSSFPLKKATKGLPKIQIDDDSELIDEDSLLTEDDLKK 177

Query: 184 PQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRC 243
           P+LP VGDCEVG+TRKACKNC CGRAEAEEKVEKL LT +Q+ NPQSACG+CGLGDAFRC
Sbjct: 178 PELPVVGDCEVGATRKACKNCTCGRAEAEEKVEKLNLTSEQINNPQSACGNCGLGDAFRC 237

Query: 244 GTCPYKGLPPFKLGEKVSLSSNFLVADI 271
           GTCPY+GLP FK GEK++L  NFL AD+
Sbjct: 238 GTCPYRGLPAFKPGEKIALPGNFLAADM 265

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XYW4|DRE21_ORYSI Anamorsin homolog 1 OS=Oryza sativa subsp. indica GN=H0403D02.15 PE=2 SV=1

 Score =  268 bits (684), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 144/254 (56%), Positives = 181/254 (71%), Gaps = 9/254 (3%)

Query: 20  LNAIRDLGDEA-VEQCDPQIITQASSLS-QLPVESFSIDTVLSISSSHELPGDQLLEEIS 77
           L A+ DL   A V + +  +ITQ +SL  +LP    S+ +VL++    E  G+Q + EIS
Sbjct: 19  LRAVGDLAAAAGVSREEVVVITQCASLGGKLPFADASVGSVLAVIKKVENLGNQFITEIS 78

Query: 78  RVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVK 137
           RVLK GG +L+     S   D D   +++E KLLL GF+D Q     S      V+  +K
Sbjct: 79  RVLKAGGMVLVQ----SSPSDQDPN-NSIERKLLLGGFVDVQASAASSQDNEHSVN--IK 131

Query: 138 GKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGST 197
            KK +W +GSSF +KKA K L K+Q+DDDS+LIDED+LLTE+DLKKP+LP VGDCEVG+T
Sbjct: 132 AKKASWSMGSSFPLKKATKGLPKIQIDDDSELIDEDSLLTEDDLKKPELPVVGDCEVGAT 191

Query: 198 RKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLG 257
           RKACKNC CGRAEAEEKVEKL LT +Q+ NPQSACG+CGLGDAFRCGTCPY+GLP FK G
Sbjct: 192 RKACKNCTCGRAEAEEKVEKLNLTSEQINNPQSACGNCGLGDAFRCGTCPYRGLPAFKPG 251

Query: 258 EKVSLSSNFLVADI 271
           EK++L  NFL AD+
Sbjct: 252 EKIALPGNFLAADM 265

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Oryza sativa subsp. indica (taxid: 39946)

>sp|B8ARI7|DRE22_ORYSI Anamorsin homolog 2 OS=Oryza sativa subsp. indica GN=OsI_17963 PE=2 SV=1

 Score =  265 bits (678), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 144/254 (56%), Positives = 181/254 (71%), Gaps = 9/254 (3%)

Query: 20  LNAIRDLGDEA-VEQCDPQIITQASSLS-QLPVESFSIDTVLSISSSHELPGDQLLEEIS 77
           L A+ DL   A V + +  +ITQ +SL  +LP +  S+ +VL++    E  GD  + EIS
Sbjct: 18  LRAVGDLAAAAGVSREEVVVITQCASLGGKLPFDDASVGSVLAVIKKVENLGDLFITEIS 77

Query: 78  RVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVK 137
           RVLK GG +LI     S   D D   ++++ KLLL GF+D Q     S      V+  +K
Sbjct: 78  RVLKAGGMVLIQ----SSPSDQDPN-NSIQRKLLLGGFVDVQASAASSQDSEHSVT--IK 130

Query: 138 GKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGST 197
            KK +W +GSSF +KKA K L K+Q+DDDS+LIDED+LLTE+DLKKP+LP VGDCEVG+T
Sbjct: 131 AKKVSWSMGSSFPLKKATKGLPKIQIDDDSELIDEDSLLTEDDLKKPELPVVGDCEVGAT 190

Query: 198 RKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLG 257
           RKACKNC CGRAEAEEKVEKL LT +Q+ NPQSACG+CGLGDAFRCGTCPY+GLP FK G
Sbjct: 191 RKACKNCTCGRAEAEEKVEKLNLTSEQINNPQSACGNCGLGDAFRCGTCPYRGLPAFKPG 250

Query: 258 EKVSLSSNFLVADI 271
           EK++L  NFL AD+
Sbjct: 251 EKIALPGNFLAADL 264

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q7XPW7|DRE22_ORYSJ Anamorsin homolog 2 OS=Oryza sativa subsp. japonica GN=Os04g0682050 PE=2 SV=1

 Score =  264 bits (674), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 138/235 (58%), Positives = 172/235 (73%), Gaps = 8/235 (3%)

Query: 38  IITQASSLS-QLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDK 96
           +ITQ +SL  +LP +  S+ +VL++    E  GD  + EISRVLK GG +LI     S  
Sbjct: 37  VITQCASLGGKLPFDDASVGSVLAVIKKVENLGDLFITEISRVLKAGGMVLIQ----SSP 92

Query: 97  GDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPK 156
            D D   ++++ KLLL GF+D Q     S      V+  +K KK +W +GSSF +KKA K
Sbjct: 93  SDQDPN-NSIQRKLLLGGFVDVQASAASSQDSEHSVT--IKAKKVSWSMGSSFPLKKATK 149

Query: 157 SLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVE 216
            L K+Q+DDDS+LIDED+LLTE+DLKKP+LP VGDCEVG+TRKACKNC CGRAEAEEKVE
Sbjct: 150 GLPKIQIDDDSELIDEDSLLTEDDLKKPELPVVGDCEVGATRKACKNCTCGRAEAEEKVE 209

Query: 217 KLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
           KL LT +Q+ NPQSACG+CGLGDAFRCGTCPY+GLP FK GEK++L  NFL AD+
Sbjct: 210 KLNLTSEQINNPQSACGNCGLGDAFRCGTCPYRGLPAFKPGEKIALPGNFLAADL 264

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
225425061	276	PREDICTED: anamorsin homolog [Vitis vini	0.996	0.978	0.735	1e-106
292630750	272	RecName: Full=Anamorsin homolog; AltName	0.996	0.992	0.735	1e-106
292630769	277	RecName: Full=Anamorsin homolog; AltName	0.996	0.974	0.705	1e-101
118483629	277	unknown [Populus trichocarpa]	0.996	0.974	0.705	1e-101
255537095	274	Anamorsin, putative [Ricinus communis] g	0.985	0.974	0.686	1e-98
224082520	266	predicted protein [Populus trichocarpa]	0.974	0.992	0.691	2e-97
147771846	279	hypothetical protein VITISV_035762 [Viti	0.933	0.906	0.672	7e-93
356543201	267	PREDICTED: anamorsin homolog [Glycine ma	0.959	0.973	0.645	3e-90
388497454	274	unknown [Lotus japonicus]	0.977	0.967	0.654	6e-90
356538587	260	PREDICTED: anamorsin homolog [Glycine ma	0.959	1.0	0.645	2e-88

>gi|225425061|ref|XP_002271546.1| PREDICTED: anamorsin homolog [Vitis vinifera]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/272 (73%), Positives = 226/272 (83%), Gaps = 2/272 (0%)

Query: 1   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 60
           +Q++ LAL++ ++L +S VL+A+R L +  V+QCDP IITQASSLSQLPVES S+D V+S
Sbjct: 6   LQNSTLALTDHEVLSISTVLDAVRKLDNAGVDQCDPLIITQASSLSQLPVESSSLDIVIS 65

Query: 61  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 120
           I  S E P D+LL EISRVLKPGGT+LI K   S  G  D   S LE KLL+AGFL+AQ 
Sbjct: 66  ICRSLEFPCDKLLAEISRVLKPGGTVLIQKTSQSVAGIKDGETS-LERKLLMAGFLEAQA 124

Query: 121 IQLKSVVPAE-VVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEE 179
           IQLK VVP+E   SFG+K KKP+WKIGSSF+IKKA KSL K Q++DD DLIDED+LLTEE
Sbjct: 125 IQLKPVVPSEGAQSFGIKAKKPSWKIGSSFSIKKAEKSLPKFQIEDDMDLIDEDSLLTEE 184

Query: 180 DLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGD 239
           DLKKPQLP  GDCEVGSTRKACKNC CGRAE EEKVEKLGLTMDQL NPQSACGSCGLGD
Sbjct: 185 DLKKPQLPVDGDCEVGSTRKACKNCTCGRAEEEEKVEKLGLTMDQLNNPQSACGSCGLGD 244

Query: 240 AFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
           AFRCGTCPYKGLPPFKLG+KVSLS NFLVADI
Sbjct: 245 AFRCGTCPYKGLPPFKLGDKVSLSGNFLVADI 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292630750|sp|D1I234.1|DRE2_VITVI RecName: Full=Anamorsin homolog; AltName: Full=Fe-S cluster assembly protein DRE2 homolog gi|297738244|emb|CBI27445.3| unnamed protein product [Vitis vinifera]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/272 (73%), Positives = 226/272 (83%), Gaps = 2/272 (0%)

Query: 1   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 60
           +Q++ LAL++ ++L +S VL+A+R L +  V+QCDP IITQASSLSQLPVES S+D V+S
Sbjct: 2   LQNSTLALTDHEVLSISTVLDAVRKLDNAGVDQCDPLIITQASSLSQLPVESSSLDIVIS 61

Query: 61  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 120
           I  S E P D+LL EISRVLKPGGT+LI K   S  G  D   S LE KLL+AGFL+AQ 
Sbjct: 62  ICRSLEFPCDKLLAEISRVLKPGGTVLIQKTSQSVAGIKDGETS-LERKLLMAGFLEAQA 120

Query: 121 IQLKSVVPAE-VVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEE 179
           IQLK VVP+E   SFG+K KKP+WKIGSSF+IKKA KSL K Q++DD DLIDED+LLTEE
Sbjct: 121 IQLKPVVPSEGAQSFGIKAKKPSWKIGSSFSIKKAEKSLPKFQIEDDMDLIDEDSLLTEE 180

Query: 180 DLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGD 239
           DLKKPQLP  GDCEVGSTRKACKNC CGRAE EEKVEKLGLTMDQL NPQSACGSCGLGD
Sbjct: 181 DLKKPQLPVDGDCEVGSTRKACKNCTCGRAEEEEKVEKLGLTMDQLNNPQSACGSCGLGD 240

Query: 240 AFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
           AFRCGTCPYKGLPPFKLG+KVSLS NFLVADI
Sbjct: 241 AFRCGTCPYKGLPPFKLGDKVSLSGNFLVADI 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292630769|sp|A9PBH9.1|DRE2_POPTR RecName: Full=Anamorsin homolog; AltName: Full=Fe-S cluster assembly protein DRE2 homolog gi|118483677|gb|ABK93732.1| unknown [Populus trichocarpa]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/272 (70%), Positives = 223/272 (81%), Gaps = 2/272 (0%)

Query: 1   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 60
           +Q++VLAL++D ++ +  V NA R++ ++ V+QCDPQIITQASSLS+LP+E  S+D V+ 
Sbjct: 7   LQNSVLALTDDTLISIGTVTNAAREVANDGVDQCDPQIITQASSLSKLPLEPSSVDIVIP 66

Query: 61  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 120
           I  S E PGD L++E+ RVLKPGGTILIY    S  G+ DKAIS L+ KLLL GFL+A+ 
Sbjct: 67  IFRSIEFPGDLLVKEMFRVLKPGGTILIYSSQQSVIGETDKAISGLQRKLLLGGFLEAEA 126

Query: 121 IQLKSVVPAEVV-SFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEE 179
           +Q K V  + VV SFGVK KKP+W IGSSFA+KK+ KS  K+Q DD SDLIDED+LLTEE
Sbjct: 127 LQPKPVGLSNVVCSFGVKAKKPSWNIGSSFALKKSIKSPVKVQNDDYSDLIDEDSLLTEE 186

Query: 180 DLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGD 239
           DLKKPQLP VGDCEVGSTRKACKNC CGRAE EEKV KLG TMDQL NPQSACGSCGLGD
Sbjct: 187 DLKKPQLPPVGDCEVGSTRKACKNCTCGRAEEEEKV-KLGPTMDQLSNPQSACGSCGLGD 245

Query: 240 AFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
           AFRCGTCPYKGLPPFKLGEKVSLS NFLVADI
Sbjct: 246 AFRCGTCPYKGLPPFKLGEKVSLSENFLVADI 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483629|gb|ABK93709.1| unknown [Populus trichocarpa]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/272 (70%), Positives = 223/272 (81%), Gaps = 2/272 (0%)

Query: 1   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 60
           +Q++VLAL++D ++ +  V NA R++ ++ V+QCDPQIITQASSLS+LP+E  S+D V+ 
Sbjct: 7   LQNSVLALADDTLISIGTVTNAAREVANDGVDQCDPQIITQASSLSKLPLEPSSVDIVIP 66

Query: 61  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 120
           I  S E PGD L++E+ RVLKPGGTILIY    S  G+ DKAIS L+ KLLL GFL+A+ 
Sbjct: 67  IFRSIEFPGDLLVKEMFRVLKPGGTILIYSSQQSVIGETDKAISGLQRKLLLGGFLEAEA 126

Query: 121 IQLKSVVPAEVV-SFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEE 179
           +Q K V  + VV SFGVK KKP+W IGSSFA+KK+ KS  K+Q DD SDLIDED+LLTEE
Sbjct: 127 LQPKPVGLSNVVCSFGVKAKKPSWNIGSSFALKKSIKSPVKVQNDDYSDLIDEDSLLTEE 186

Query: 180 DLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGD 239
           DLKKPQLP VGDCEVGSTRKACKNC CGRAE EEKV KLG TMDQL NPQSACGSCGLGD
Sbjct: 187 DLKKPQLPPVGDCEVGSTRKACKNCTCGRAEEEEKV-KLGPTMDQLSNPQSACGSCGLGD 245

Query: 240 AFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
           AFRCGTCPYKGLPPFKLGEKVSLS NFLVADI
Sbjct: 246 AFRCGTCPYKGLPPFKLGEKVSLSENFLVADI 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537095|ref|XP_002509614.1| Anamorsin, putative [Ricinus communis] gi|292630771|sp|B9RBT0.1|DRE2_RICCO RecName: Full=Anamorsin homolog; AltName: Full=Fe-S cluster assembly protein DRE2 homolog gi|223549513|gb|EEF51001.1| Anamorsin, putative [Ricinus communis]

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 186/271 (68%), Positives = 220/271 (81%), Gaps = 4/271 (1%)

Query: 2   QSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI 61
           Q +VLA ++D +LPVS ++NA+R+LG+E  EQCDPQ++TQASSLS+LPV+S S+D V+SI
Sbjct: 7   QCSVLAFTDDAVLPVSTIVNAVRELGNEGAEQCDPQVVTQASSLSKLPVDSSSMDIVISI 66

Query: 62  SSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 121
             S +  GD L EEISRVLKPGGT+LIYK L S      +A+ ALE KLLLAGFL+AQ +
Sbjct: 67  CRSLQFQGDFLFEEISRVLKPGGTVLIYKTLQSVAEGTSEAVLALERKLLLAGFLEAQGL 126

Query: 122 QLKSVVPAEV-VSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEED 180
           QL S+  + +  SFG+K KKP+WKIGSSFA+KK+ K   K+ +DD  DLIDED+LLTEED
Sbjct: 127 QLNSLELSGLDHSFGMKAKKPSWKIGSSFALKKSTKGSVKVNLDD--DLIDEDSLLTEED 184

Query: 181 LKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDA 240
           +KKP +   GDCEVGSTRKACKNC CGRAEAEEKV KLG TM+QL NPQSACGSCGLGDA
Sbjct: 185 MKKPPIAPGGDCEVGSTRKACKNCTCGRAEAEEKV-KLGPTMEQLNNPQSACGSCGLGDA 243

Query: 241 FRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
           FRC TCPYKGLPPFKLGEKVSLS NFL ADI
Sbjct: 244 FRCSTCPYKGLPPFKLGEKVSLSGNFLAADI 274

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082520|ref|XP_002306726.1| predicted protein [Populus trichocarpa] gi|222856175|gb|EEE93722.1| predicted protein [Populus trichocarpa]

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 188/272 (69%), Positives = 218/272 (80%), Gaps = 8/272 (2%)

Query: 1   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 60
           +Q++VLAL++D ++ +  V NA R++ ++ V+QCDPQIITQASSLS+LP+E  S+D V+ 
Sbjct: 2   LQNSVLALTDDTLISIGTVTNAAREVANDGVDQCDPQIITQASSLSKLPLEPSSVDIVIP 61

Query: 61  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 120
           I  S E PGD L++E+ RVLKPGGTILIY    S  G+ DK       KLLL GFL+A+ 
Sbjct: 62  IFRSIEFPGDLLVKEMFRVLKPGGTILIYSSQQSVIGETDKR------KLLLGGFLEAEA 115

Query: 121 IQLKSVVPAEVV-SFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEE 179
           +Q K V  + VV SFGVK KKP+W IGSSFA+KK+ KS  K+Q DD SDLIDED+LLTEE
Sbjct: 116 LQPKPVGLSNVVCSFGVKAKKPSWNIGSSFALKKSIKSPVKVQNDDYSDLIDEDSLLTEE 175

Query: 180 DLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGD 239
           DLKKPQLP VGDCEVGSTRKACKNC CGRAE EEKV KLG TMDQL NPQSACGSCGLGD
Sbjct: 176 DLKKPQLPPVGDCEVGSTRKACKNCTCGRAEEEEKV-KLGPTMDQLSNPQSACGSCGLGD 234

Query: 240 AFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
           AFRCGTCPYKGLPPFKLGEKVSLS NFLVADI
Sbjct: 235 AFRCGTCPYKGLPPFKLGEKVSLSENFLVADI 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771846|emb|CAN71337.1| hypothetical protein VITISV_035762 [Vitis vinifera]

 Score =  346 bits (887), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 183/272 (67%), Positives = 210/272 (77%), Gaps = 19/272 (6%)

Query: 1   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 60
           +Q++ LAL++ ++L +S VL+A+R L +  V+QCDP IITQASSL+ L          L 
Sbjct: 26  LQNSTLALTDHEVLXISTVLDAVRKLDNAGVDQCDPLIITQASSLNHL--------NFLV 77

Query: 61  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 120
           IS           ++ SRVLKPGGT+LI K   S  G  D   S LE KLL+AGFL+AQ 
Sbjct: 78  ISC---------WQKSSRVLKPGGTVLIQKTSQSVAGIKDGETS-LERKLLMAGFLEAQA 127

Query: 121 IQLKSVVPAE-VVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEE 179
           JQLK VVP+E   SFG+K KKP+WKIGSSF+IKKA KSL K Q++DD DLIDED+LLTEE
Sbjct: 128 JQLKPVVPSEGAQSFGIKAKKPSWKIGSSFSIKKAEKSLPKFQIEDDMDLIDEDSLLTEE 187

Query: 180 DLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGD 239
           DLKKPQLP  GDCEVGSTRKACKNC CGRAE EEKVEKLGLTMDQL NPQSACGSCGLGD
Sbjct: 188 DLKKPQLPVDGDCEVGSTRKACKNCTCGRAEEEEKVEKLGLTMDQLNNPQSACGSCGLGD 247

Query: 240 AFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
           AFRCGTCPYKGLPPFKLG+KVSLS NFLVADI
Sbjct: 248 AFRCGTCPYKGLPPFKLGDKVSLSGNFLVADI 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543201|ref|XP_003540051.1| PREDICTED: anamorsin homolog [Glycine max]

 Score =  337 bits (864), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 175/271 (64%), Positives = 208/271 (76%), Gaps = 11/271 (4%)

Query: 2   QSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI 61
             AVLA ++  +LPVS V +AIR+LG+E VEQ DP ++T AS LS+LPV+S S+D ++ I
Sbjct: 7   HGAVLACTDGAVLPVSQVFDAIRELGNEGVEQWDPLVLTSASLLSKLPVDSSSVDFLILI 66

Query: 62  SSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 121
             S + P DQL++EI RVLK  GTILI K   S  G  DK ISALE KLLLAGF + Q +
Sbjct: 67  WLSIDCPVDQLIQEILRVLKVDGTILIRKSSQSAVGSFDKIISALENKLLLAGFTETQVL 126

Query: 122 QLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDL 181
           QL           G+K KKP+WKIGSSFA+KK  KS  K+Q+D DSDLIDED+LLTEEDL
Sbjct: 127 QLT----------GIKAKKPSWKIGSSFALKKVIKSSPKMQIDFDSDLIDEDSLLTEEDL 176

Query: 182 KKPQLP-SVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDA 240
           KKPQLP ++GDCE+GSTRKACKNC CGRAE +EK+ KLGLT +Q+ NPQSACG+CGLGDA
Sbjct: 177 KKPQLPPAIGDCEIGSTRKACKNCTCGRAEEDEKILKLGLTTEQINNPQSACGNCGLGDA 236

Query: 241 FRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
           FRC TCPYKGLP FKLGEKV+LS NFL ADI
Sbjct: 237 FRCSTCPYKGLPAFKLGEKVALSGNFLAADI 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497454|gb|AFK36793.1| unknown [Lotus japonicus]

 Score =  336 bits (861), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 176/269 (65%), Positives = 212/269 (78%), Gaps = 4/269 (1%)

Query: 4   AVLALSEDKILPVSAVLNAIRDLGDEAV-EQCDPQIITQASSLSQLPVESFSIDTVLSIS 62
           ++LA +++ +LPVS V +AI++LG++ V EQ +P +IT ASSLS+LPVES S+D  + I 
Sbjct: 9   SLLACTDEAVLPVSQVFDAIKELGNQGVDEQWNPLVITSASSLSKLPVESSSVDVAILIW 68

Query: 63  SSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 122
            S + P DQL++EI RVLK GGT LI K   S  G VDKAIS LE KLLL GF + Q +Q
Sbjct: 69  QSLDSPVDQLVQEILRVLKAGGTTLIRKSSQSGVGSVDKAISDLESKLLLGGFTETQVLQ 128

Query: 123 LKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLK 182
             S VP+   S  VK KKP+WKIGSSFA+KKA KS  K+Q+D DSDLIDED+LLTE+DLK
Sbjct: 129 --STVPSGSKSSWVKAKKPSWKIGSSFALKKAVKSSPKVQIDFDSDLIDEDSLLTEDDLK 186

Query: 183 KPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFR 242
           KPQLP +GDCE+GSTRKACKNC CGRAE EEKV KLGLT +Q+ NPQS+CGSCGLGDAFR
Sbjct: 187 KPQLP-LGDCEIGSTRKACKNCSCGRAEEEEKVLKLGLTAEQINNPQSSCGSCGLGDAFR 245

Query: 243 CGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
           C TCPYKGLP FKLGEKV++S NFL AD+
Sbjct: 246 CSTCPYKGLPAFKLGEKVAISGNFLAADL 274

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538587|ref|XP_003537784.1| PREDICTED: anamorsin homolog [Glycine max]

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 175/271 (64%), Positives = 206/271 (76%), Gaps = 11/271 (4%)

Query: 1   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 60
           M  AVLA ++  +LPVS V +AIR+LG+  +EQ DP ++T AS LS+LPV+S S+D V+ 
Sbjct: 1   MDGAVLACTDGAVLPVSQVFDAIRELGNGGLEQWDPLVLTSASLLSKLPVDSSSVDFVIL 60

Query: 61  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 120
           I  S + P DQL++EI RVLK  GTILI K   S  G  DK IS+LE KLLLAGF + Q 
Sbjct: 61  IWLSIDCPVDQLIQEILRVLKVDGTILIRKSSQSAVGSFDKIISSLENKLLLAGFTEPQV 120

Query: 121 IQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEED 180
           +Q          S G+K KKP+WKIGSSFA+KK  +S  K+Q+D DSDLIDED+LLTEED
Sbjct: 121 LQ----------SAGIKAKKPSWKIGSSFALKKVIRSSPKMQIDFDSDLIDEDSLLTEED 170

Query: 181 LKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDA 240
           LKKPQLP  GDCE+GSTRKACKNC CGRAE EEKV KLGLT +Q+ NPQSACG+CGLGDA
Sbjct: 171 LKKPQLPP-GDCEIGSTRKACKNCTCGRAEEEEKVLKLGLTTEQIDNPQSACGNCGLGDA 229

Query: 241 FRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
           FRC TCPYKGLP FKLGEKV+LS NFL ADI
Sbjct: 230 FRCSTCPYKGLPAFKLGEKVALSGNFLAADI 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2146178	272	AT5G18400 [Arabidopsis thalian	0.977	0.974	0.527	1.1e-73
UNIPROTKB|Q6FI81	312	CIAPIN1 "Anamorsin" [Homo sapi	0.302	0.262	0.550	3.3e-30
UNIPROTKB|Q5EAC7	310	CIAPIN1 "Anamorsin" [Bos tauru	0.302	0.264	0.561	5.3e-30
UNIPROTKB|E2RTJ0	315	CIAPIN1 "Uncharacterized prote	0.302	0.260	0.550	1.8e-29
DICTYBASE|DDB_G0285251	256	rsc43 "Protein DRE2" [Dictyost	0.922	0.976	0.350	2.1e-29
UNIPROTKB|I3L704	313	CIAPIN1 "Uncharacterized prote	0.302	0.261	0.561	9.6e-29
MGI|MGI:1922083	309	Ciapin1 "cytokine induced apop	0.302	0.265	0.5	2e-28
RGD|1549737	309	Ciapin1 "cytokine induced apop	0.302	0.265	0.534	4.5e-27
ZFIN|ZDB-GENE-040808-57	349	ciapin1 "cytokine induced apop	0.313	0.243	0.521	4.4e-25
TAIR|locus:4515103586	182	AT5G18362 "AT5G18362" [Arabido	0.354	0.527	0.5	6.3e-21

TAIR|locus:2146178 AT5G18400 [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 143/271 (52%), Positives = 193/271 (71%)

Query:     2 QSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI 61
             Q  VLA+++D +LPVS+VL  +++LG E +E  DP IITQAS+++Q P+++ S++ VL+I
Sbjct:     7 QKTVLAVTDDVVLPVSSVLAIMKELGKEVIESFDPLIITQASTINQFPLDASSVEAVLAI 66

Query:    62 SSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 121
             S + + P D++  E SR+LKPGGT+ + K L  + G++ + I   + ++ LAGFL+ Q +
Sbjct:    67 SKTSDFPSDKICGEFSRILKPGGTVSVCKVLEGETGEIQQTI---QRRVTLAGFLEPQCL 123

Query:   122 QLKSV-VPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVXXXXXXXXXXXXXXXXX 180
              LKS+ +    +SFG+K KKP+WKIGSSFA+KK   +L K+ +                 
Sbjct:   124 DLKSIKLSTFSLSFGIKAKKPSWKIGSSFALKKPVTNLFKIDLDDDVDLIDEDSLLTEED 183

Query:   181 XKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDA 240
               KPQLP    CE  +T+KACKNC+CGRAE EEK  KLGLT DQ++NPQS+CGSCGLGDA
Sbjct:   184 LMKPQLPVASGCE--TTKKACKNCVCGRAEIEEKAVKLGLTEDQIENPQSSCGSCGLGDA 241

Query:   241 FRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
             FRCGTCPYKGLPPFKLGEKV+LS NFL ADI
Sbjct:   242 FRCGTCPYKGLPPFKLGEKVTLSQNFLEADI 272

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6FI81 CIAPIN1 "Anamorsin" [Homo sapiens (taxid:9606)]

 Score = 226 (84.6 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 49/89 (55%), Positives = 59/89 (66%)

Query:   182 KKPQLPSV--GDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKN-PQSACGSCGLG 238
             KKP   S+    C  G  RKACKNC CG AE  EK EK   + +Q+ + P+SACG+C LG
Sbjct:   225 KKPDPASLRAASCGEGKKRKACKNCTCGLAEELEK-EK---SREQMSSQPKSACGNCYLG 280

Query:   239 DAFRCGTCPYKGLPPFKLGEKVSLSSNFL 267
             DAFRC +CPY G+P FK GEKV LS + L
Sbjct:   281 DAFRCASCPYLGMPAFKPGEKVLLSDSNL 309

GO:0006915 "apoptotic process" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|Q5EAC7 CIAPIN1 "Anamorsin" [Bos taurus (taxid:9913)]

 Score = 228 (85.3 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
 Identities = 50/89 (56%), Positives = 59/89 (66%)

Query:   182 KKPQLPSVG--DCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKN-PQSACGSCGLG 238
             KKP   S+    C  G  RKACKNC CG AE  EK EK   + DQ+ + P+SACG+C LG
Sbjct:   223 KKPDPASLRAPSCGEGKKRKACKNCTCGLAEELEK-EK---SRDQISSQPKSACGNCYLG 278

Query:   239 DAFRCGTCPYKGLPPFKLGEKVSLSSNFL 267
             DAFRC +CPY G+P FK GEKV LS + L
Sbjct:   279 DAFRCASCPYLGMPAFKPGEKVLLSDSNL 307

GO:0005737 "cytoplasm" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|E2RTJ0 CIAPIN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 223 (83.6 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
 Identities = 49/89 (55%), Positives = 59/89 (66%)

Query:   182 KKPQLPSVG--DCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKN-PQSACGSCGLG 238
             KKP   S+    C  G  RKACKNC CG AE  EK EK   + +Q  + P+SACG+C LG
Sbjct:   228 KKPDPASLRAPSCGEGKKRKACKNCTCGLAEELEK-EK---SREQASSQPKSACGNCYLG 283

Query:   239 DAFRCGTCPYKGLPPFKLGEKVSLSSNFL 267
             DAFRC +CPY G+P FK GE+V LS+N L
Sbjct:   284 DAFRCASCPYLGMPAFKPGEQVLLSNNNL 312

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

DICTYBASE|DDB_G0285251 rsc43 "Protein DRE2" [Dictyostelium discoideum (taxid:44689)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 97/277 (35%), Positives = 135/277 (48%)

Query:     1 MQSAVLALS-EDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVL 59
             M S  L L+ E ++L +S V N+   +    V++    + T  S   Q    +F  D V+
Sbjct:     1 MNSLSLELNKEQEVLIISDVENSESIINQ--VKELSKTVTTSLSKEQQQIQNNF--DHVI 56

Query:    60 SISSSHELP-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 118
              ISS    P    L+   S +LK GG + IY+    ++  V+  +  L G L+   F   
Sbjct:    57 IISSK---PFNSALISMYSNLLKKGGKLSIYQT-NENETLVNSGMDFLIGGLV--DFKAT 110

Query:   119 QRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVXXXXXXXXXXXXXXX 178
                  K++V A+         KP+W    S  I   P + +                   
Sbjct:   111 SNSTYKTIVHAD---------KPSWDTNESSTIN-IPSTSSNNPWASIEGGDRINENDLV 160

Query:   179 XXXKKPQLPS--VGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQ--SACGS 234
                 K   P+  + DCEVG T+KACKNC CGRAE EE   K  LT + ++NP   S+CG+
Sbjct:   161 SENDKTSKPATTLDDCEVGKTKKACKNCTCGRAE-EENQSKPKLTKEMIENPGVGSSCGN 219

Query:   235 CGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 271
             C LGDAFRCG CPY+GLP FK+GEK+ L  +FLV DI
Sbjct:   220 CSLGDAFRCGGCPYRGLPTFKVGEKIQLPDDFLVDDI 256

GO:0006915 "apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|I3L704 CIAPIN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 230 (86.0 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
 Identities = 50/89 (56%), Positives = 60/89 (67%)

Query:   182 KKPQLPSV--GDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKN-PQSACGSCGLG 238
             KKP   S+    C  G  RKACKNC CG AE  EK EK   + DQ+ + P+SACG+C LG
Sbjct:   226 KKPDPASLRAAPCGEGKKRKACKNCTCGLAEELEK-EK---SRDQMSSQPKSACGNCYLG 281

Query:   239 DAFRCGTCPYKGLPPFKLGEKVSLSSNFL 267
             DAFRC +CPY G+P FK GEKV LS++ L
Sbjct:   282 DAFRCASCPYLGMPAFKPGEKVLLSNSNL 310

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

MGI|MGI:1922083 Ciapin1 "cytokine induced apoptosis inhibitor 1" [Mus musculus (taxid:10090)]

 Score = 211 (79.3 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
 Identities = 44/88 (50%), Positives = 54/88 (61%)

Query:   182 KKPQLPSVG--DCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGD 239
             K+P   S+    C  G  RKACKNC CG AE  E+ +       Q   P+SACG+C LGD
Sbjct:   223 KRPDPASLKAPSCGEGKKRKACKNCTCGLAEELEREQSKA----QSSQPKSACGNCYLGD 278

Query:   240 AFRCGTCPYKGLPPFKLGEKVSLSSNFL 267
             AFRC  CPY G+P FK GE+V LS++ L
Sbjct:   279 AFRCANCPYLGMPAFKPGEQVLLSNSNL 306

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0006915 "apoptotic process" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

RGD|1549737 Ciapin1 "cytokine induced apoptosis inhibitor 1" [Rattus norvegicus (taxid:10116)]

 Score = 220 (82.5 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
 Identities = 47/88 (53%), Positives = 54/88 (61%)

Query:   182 KKPQLPSVG--DCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGD 239
             KKP   S+    C  G  RKACKNC CG AE  EK +       Q   P+SACG+C LGD
Sbjct:   223 KKPDPASLKAPSCGEGKKRKACKNCTCGLAEELEKEQSKA----QSSQPKSACGNCYLGD 278

Query:   240 AFRCGTCPYKGLPPFKLGEKVSLSSNFL 267
             AFRC  CPY G+P FK GE+V LSS+ L
Sbjct:   279 AFRCANCPYLGMPAFKPGEQVLLSSSNL 306

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA;ISO

GO:0043066 "negative regulation of apoptotic process" evidence=IEA;ISO

ZFIN|ZDB-GENE-040808-57 ciapin1 "cytokine induced apoptosis inhibitor 1" [Danio rerio (taxid:7955)]

 Score = 212 (79.7 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
 Identities = 48/92 (52%), Positives = 57/92 (61%)

Query:   182 KKPQLPSV-GDCEVGSTRK--ACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLG 238
             KKP   S+   C   S +K  ACKNC CG AE  E+  K      Q   P+SACG+C LG
Sbjct:   261 KKPDPSSLKASCGDDSKKKKKACKNCTCGLAEELEQESKAAQKASQ---PKSACGNCYLG 317

Query:   239 DAFRCGTCPYKGLPPFKLGEKVSLSSNFLVAD 270
             DAFRCG+CPY G+P FK GEKV L+ N  +AD
Sbjct:   318 DAFRCGSCPYLGMPAFKPGEKVLLA-NTDIAD 348

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

TAIR|locus:4515103586 AT5G18362 "AT5G18362" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 49/98 (50%), Positives = 61/98 (62%)

Query:   137 KGKKPTWKIGSSFAIKKAPKSLAKLQVXXXXXXXXXXXXXXXXXXKKPQLPSVGDCEVGS 196
             +GKK +WKIGSSFA+KK  K L K  +                  KKPQ+P+   CE  +
Sbjct:    11 EGKKNSWKIGSSFALKKPAKFLLKDNLDDDLDLIDEDSLLTEDDLKKPQVPAASGCE--T 68

Query:   197 TRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGS 234
              +KACKNC+CGR E E K  KLGLT DQ++NPQS+CGS
Sbjct:    69 PKKACKNCVCGRDEIERKAVKLGLTEDQIENPQSSCGS 106

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XPW7	DRE22_ORYSJ	No assigned EC number	0.5872	0.8376	0.8598	yes	no
A2XYW4	DRE21_ORYSI	No assigned EC number	0.5669	0.9040	0.9245	N/A	no
B8ARI7	DRE22_ORYSI	No assigned EC number	0.5669	0.9040	0.9280	N/A	no
Q5EAC7	CPIN1_BOVIN	No assigned EC number	0.3823	0.9298	0.8129	yes	no
A9PBH9	DRE2_POPTR	No assigned EC number	0.7058	0.9963	0.9747	yes	no
O15692	DRE2_DICDI	No assigned EC number	0.3614	0.8929	0.9453	yes	no
O74821	DRE2_SCHPO	No assigned EC number	0.3135	0.9409	0.8854	yes	no
Q8L7Z3	DRE2_ARATH	No assigned EC number	0.5867	0.9778	0.9742	yes	no
B9RBT0	DRE2_RICCO	No assigned EC number	0.6863	0.9852	0.9744	N/A	no
D1I234	DRE2_VITVI	No assigned EC number	0.7352	0.9963	0.9926	yes	no
B6TB21	DRE2_MAIZE	No assigned EC number	0.5583	0.9483	0.9771	N/A	no
B8LPG7	DRE22_PICSI	No assigned EC number	0.5052	0.9483	0.9277	N/A	no
B7FNA9	DRE2_MEDTR	No assigned EC number	0.6383	0.9594	0.9811	N/A	no
Q7XQ97	DRE21_ORYSJ	No assigned EC number	0.5522	0.9409	0.9622	yes	no
C3YFB4	DRE2_BRAFL	No assigned EC number	0.3161	0.9151	0.8025	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021214001 SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (272 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
pfam05093	97	pfam05093, CIAPIN1, Cytokine-induced anti-apoptosi	1e-34
COG5636	284	COG5636, COG5636, Uncharacterized conserved protei	2e-21
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	5e-08

>gnl|CDD|218427 pfam05093, CIAPIN1, Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis

 Score =  120 bits (302), Expect = 1e-34
 Identities = 46/97 (47%), Positives = 54/97 (55%), Gaps = 13/97 (13%)

Query: 179 EDLKKPQLPSV--GDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQ-----------L 225
           EDLKKP   ++       G  RKACKNC CG AE EE+ +K      Q           +
Sbjct: 1   EDLKKPDPVTLRKCGPGPGKKRKACKNCTCGLAEEEEQEKKDKSAAQQQKVEDDLAEITV 60

Query: 226 KNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSL 262
           +   S+CG+C LGDAFRC  CPY GLP FK GEKV L
Sbjct: 61  EGKTSSCGNCYLGDAFRCSGCPYLGLPAFKPGEKVKL 97

Anamorsin, subsequently named CIAPIN1 for cytokine-induced anti-apoptosis inhibitor 1, in humans is the homologue of yeast Dre2, a conserved soluble eukaryotic Fe-S cluster protein, that functions in cytosolic Fe-S protein biogenesis. It is found in both the cytoplasm and in the mitochondrial intermembrane space (IMS). CIAPIN1 is found to be up-regulated in hepatocellular cancer, is considered to be a downstream effector of the receptor tyrosine kinase-Ras signalling pathway, and is essential in mouse definitive haematopoiesis. Dre2 has been found to interact with the yeast reductase Tah18, forming a tight cytosolic complex implicated in the response to high levels of oxidative stress. Length = 97

>gnl|CDD|227923 COG5636, COG5636, Uncharacterized conserved protein, contains Zn-ribbon-like motif [Function unknown]

 Score = 91.0 bits (225), Expect = 2e-21
 Identities = 56/203 (27%), Positives = 84/203 (41%), Gaps = 24/203 (11%)

Query: 80  LKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGK 139
           L+ G  +  +KK          + S L  K   +     +          ++ +     +
Sbjct: 79  LQSGSKLPTFKK-------ASSSTSNLPKKADHSRQPIVKETDSFKPPSFKMTTEPKVYR 131

Query: 140 KPTWKIGSSFAIKKAPKSLAK--LQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGST 197
                +     ++K  +S A+  ++ D D   I ED LL E+   K    S         
Sbjct: 132 VVDDLMEDKEELRKLLRSKAQYMMRKDTDPRTIMEDELLDEDSEDKAIQRSECPPSKTKK 191

Query: 198 RKACKNCICGRAEAEE-------KVEKLGLTMDQLKNPQ--------SACGSCGLGDAFR 242
           ++ACK+C CG  E EE       + + +  T D+L            SACG+C LGDAFR
Sbjct: 192 KRACKDCTCGLKEEEENEIVRTRQDKVVKFTEDELTEIDFTIDGKKVSACGNCYLGDAFR 251

Query: 243 CGTCPYKGLPPFKLGEKVSLSSN 265
           C  CPY GLP F+ G+ VS S N
Sbjct: 252 CSGCPYLGLPAFEPGDVVSFSMN 274

Length = 284

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 49.2 bits (118), Expect = 5e-08
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 25 DLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLK 81
          DL  E +                  LP    S D V+S    H LP  ++ L EI+RVLK
Sbjct: 26 DLSPEMLALARKRAPRKFVVGDAEDLPFPDESFDVVVSSLVLHHLPDPERALREIARVLK 85

Query: 82 PGGTILI 88
          PGG ++I
Sbjct: 86 PGGKLVI 92

Members of this family are SAM dependent methyltransferases. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
KOG4020	257	consensus Protein DRE2, required for cell viabilit	100.0
PF05093	100	CIAPIN1: Cytokine-induced anti-apoptosis inhibitor	100.0
COG5636	284	Uncharacterized conserved protein, contains Zn-rib	100.0
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.35
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.23
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.22
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.22
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.19
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.02
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.98
KOG4300	252	consensus Predicted methyltransferase [General fun	98.93
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.9
PLN02244	340	tocopherol O-methyltransferase	98.89
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.89
PLN02490	340	MPBQ/MSBQ methyltransferase	98.8
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.77
PLN02336	475	phosphoethanolamine N-methyltransferase	98.62
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.55
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.53
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.5
COG2521	287	Predicted archaeal methyltransferase [General func	98.5
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.46
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.44
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.42
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.42
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.41
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.39
PRK08317	241	hypothetical protein; Provisional	98.38
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.35
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.31
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.31
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.3
PRK05785	226	hypothetical protein; Provisional	98.29
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.26
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.25
PRK11207	197	tellurite resistance protein TehB; Provisional	98.22
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.18
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.17
KOG2940	325	consensus Predicted methyltransferase [General fun	98.16
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.13
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.09
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.08
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.08
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.07
PLN02336	475	phosphoethanolamine N-methyltransferase	98.07
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.06
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.01
PRK04266	226	fibrillarin; Provisional	97.98
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.96
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.95
PRK06922	677	hypothetical protein; Provisional	97.95
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.91
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.91
PRK12335	287	tellurite resistance protein TehB; Provisional	97.89
PTZ00146	293	fibrillarin; Provisional	97.87
PLN03075	296	nicotianamine synthase; Provisional	97.87
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	97.83
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.77
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.77
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	97.75
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	97.71
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	97.67
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.66
PRK06202	232	hypothetical protein; Provisional	97.65
KOG3010	261	consensus Methyltransferase [General function pred	97.64
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.55
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.53
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.51
PRK14967	223	putative methyltransferase; Provisional	97.45
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.43
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.41
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.4
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.39
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.39
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.36
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.32
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.32
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.28
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.27
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.24
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.24
KOG2361	264	consensus Predicted methyltransferase [General fun	97.21
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.19
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.18
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.15
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.14
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.11
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.09
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.07
PRK14968	188	putative methyltransferase; Provisional	96.98
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	96.89
KOG1331	293	consensus Predicted methyltransferase [General fun	96.88
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	96.87
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	96.83
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	96.82
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	96.7
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	96.69
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	96.62
TIGR03438	301	probable methyltransferase. This model represents	96.61
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	96.61
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	96.57
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	96.49
PRK13255	218	thiopurine S-methyltransferase; Reviewed	96.48
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	96.48
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	96.42
TIGR00438	188	rrmJ cell division protein FtsJ.	96.38
PRK01581	374	speE spermidine synthase; Validated	96.31
PRK13256	226	thiopurine S-methyltransferase; Reviewed	96.26
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	96.25
PRK14901	434	16S rRNA methyltransferase B; Provisional	96.2
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	96.19
PRK03612	521	spermidine synthase; Provisional	96.16
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	96.16
PRK00811	283	spermidine synthase; Provisional	96.12
PRK07402	196	precorrin-6B methylase; Provisional	96.11
PHA03411	279	putative methyltransferase; Provisional	96.07
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	96.06
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	96.04
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	95.97
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	95.97
COG4123	248	Predicted O-methyltransferase [General function pr	95.97
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	95.95
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	95.95
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	95.94
PLN02585	315	magnesium protoporphyrin IX methyltransferase	95.89
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	95.88
PRK10901	427	16S rRNA methyltransferase B; Provisional	95.85
PRK04457	262	spermidine synthase; Provisional	95.85
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	95.82
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	95.75
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	95.71
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	95.71
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	95.66
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	95.52
PRK14904	445	16S rRNA methyltransferase B; Provisional	95.49
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	95.45
PRK14903	431	16S rRNA methyltransferase B; Provisional	95.36
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.32
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	95.31
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	95.27
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	95.26
PLN02366	308	spermidine synthase	95.24
PRK14902	444	16S rRNA methyltransferase B; Provisional	94.88
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	94.87
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	94.82
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	94.8
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	94.79
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	94.67
COG4798	238	Predicted methyltransferase [General function pred	94.65
KOG2352	482	consensus Predicted spermine/spermidine synthase [	94.64
KOG2899	288	consensus Predicted methyltransferase [General fun	94.42
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	94.41
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	94.32
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	94.05
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	93.89
KOG1271	227	consensus Methyltransferases [General function pre	93.85
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	93.78
PRK00536	262	speE spermidine synthase; Provisional	93.71
COG1041	347	Predicted DNA modification methylase [DNA replicat	93.7
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	93.55
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	93.46
PF03269	177	DUF268: Caenorhabditis protein of unknown function	93.41
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	93.06
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	92.97
PLN02823	336	spermine synthase	92.92
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	92.77
PRK13699	227	putative methylase; Provisional	92.46
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	92.09
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	91.65
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	91.45
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	91.02
PRK11524	284	putative methyltransferase; Provisional	90.96
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	90.68
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	90.58
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	90.52
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	90.49
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	90.25
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	90.21
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	90.1
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	90.05
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	89.93
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	88.72
COG4122	219	Predicted O-methyltransferase [General function pr	88.3
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	88.15
PHA03412	241	putative methyltransferase; Provisional	87.71
PLN02672	1082	methionine S-methyltransferase	86.65
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	85.36
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	85.26
PLN02668	386	indole-3-acetate carboxyl methyltransferase	84.83
KOG3201	201	consensus Uncharacterized conserved protein [Funct	84.53
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	84.53
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	84.5
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	84.12
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	83.86
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	83.81
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	83.6
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	83.59
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	82.55

>KOG4020 consensus Protein DRE2, required for cell viability [Function unknown]

Probab=100.00  E-value=1.4e-51  Score=354.61  Aligned_cols=200  Identities=39%  Similarity=0.583  Sum_probs=136.7

Q ss_pred             CCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhhhhccccC
Q 024162           49 PVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVP  128 (271)
Q Consensus        49 p~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~~~  128 (271)
                      .++.++||+.+...  .+...-.+....+..|+|+|.+.+....-    ..    ..+.....+.|+.++......-.+.
T Consensus        46 t~~~~~~e~~~~e~--a~~~~~~V~~l~~~~l~P~gtl~v~s~~g----~~----~~~l~~~~i~g~~~~~~~s~d~~s~  115 (257)
T KOG4020|consen   46 TLENARYELLTPEA--ATLSGLKVKSLLRASLKPEGTLSVLSHIG----HA----DDLLLFVKITGEKDYCWISPDVSSA  115 (257)
T ss_pred             cccccceeccchhh--ccccccchhhhhhcccCccceEehhhhcc----ch----hhHHHHHHHhCCccccccCcccccc
Confidence            35567888554422  12222245566677899999999887541    11    1444567888888764332111001


Q ss_pred             cceeEEEEEeeCCCcccccccccccCccc--------cccccC--CCCCCccCccccCCccccCCCCCCCCC-CCCCCCc
Q 024162          129 AEVVSFGVKGKKPTWKIGSSFAIKKAPKS--------LAKLQV--DDDSDLIDEDTLLTEEDLKKPQLPSVG-DCEVGST  197 (271)
Q Consensus       129 ~~~~~~~i~a~KPs~~~gss~~l~~~~~~--------~~~~~~--d~d~dlided~ll~~~d~~~~~~~~~~-~C~~~~~  197 (271)
                      +.+        |++....|+..++.+.+.        ..+.++  |.++|+||||+||++||+++|....+. .|++++|
T Consensus       116 ~ql--------kl~~~K~ss~~~q~a~k~~~~knl~s~sand~s~d~~~dlide~elldee~~~k~~~~~~~a~~~~~kK  187 (257)
T KOG4020|consen  116 NQL--------KLSITKKSSPSLQSASKNAAAKNLWSLSANDMSDDLRQDLIDEEELLDEEDLKKPDPASLRASCSPGKK  187 (257)
T ss_pred             ccc--------cccceeccCcccccccccHHHHHhhhhhccccccchhhhccChhhccCHhhcCCCCccccccCCCCccc
Confidence            111        333333333333222111        112222  334799999999999999999988776 8999999


Q ss_pred             ccCCCCCccchHHHHHHHHhcCCCccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEecCccccc
Q 024162          198 RKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVA  269 (271)
Q Consensus       198 ~~ack~ctcg~~e~~~~~~~~~~~~~~~~~~~s~cg~c~lgdafrc~~cpy~g~pafkpGe~v~l~~~~l~~  269 (271)
                      ||||||||||+||++|.+..   ......+++|+||||||||||||+||||||||||||||+|.|+++.+..
T Consensus       188 kkaCk~CtcGl~Ee~E~Eks---~~q~s~~~~s~CGnCylGdaFrCs~CPylG~PafkPGe~v~ls~~~~~~  256 (257)
T KOG4020|consen  188 KKACKNCTCGLAEEEEKEKS---REQISSNPKSACGNCYLGDAFRCSGCPYLGMPAFKPGEKVLLSDNSDKE  256 (257)
T ss_pred             chhhhcCCcccHHHHHhhhh---hhhhccCcccccCcccccccceecCCCcCCCCCCCCCCeEEeccccccc
Confidence            99999999999999997742   1122457999999999999999999999999999999999999987653

>PF05093 CIAPIN1: Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis; InterPro: IPR007785 Anamorsin, subsequently named CIAPIN1 for cytokine-induced anti-apoptosis inhibitor 1, in humans is the homologue of yeast Dre2, a conserved soluble eukaryotic Fe-S cluster protein, that functions in cytosolic Fe-S protein biogenesis

Probab=100.00  E-value=2.9e-48  Score=297.29  Aligned_cols=84  Identities=61%  Similarity=1.078  Sum_probs=71.6

Q ss_pred             cccCCCCCCCCCCCCCC--CcccCCCCCccchHHHHHHHHhcC---------CCcc-----ccCCCCCCCCCCCCCCccc
Q 024162          179 EDLKKPQLPSVGDCEVG--STRKACKNCICGRAEAEEKVEKLG---------LTMD-----QLKNPQSACGSCGLGDAFR  242 (271)
Q Consensus       179 ~d~~~~~~~~~~~C~~~--~~~~ack~ctcg~~e~~~~~~~~~---------~~~~-----~~~~~~s~cg~c~lgdafr  242 (271)
                      |||++|....+.+|+++  +||||||||||||||+++++.+..         ++.+     .+.+++|||||||||||||
T Consensus         1 eDlkkp~~~~~~~C~~~~~kkrrACKnCTCGlaE~~e~e~~~~~~~~~~~~~~~~~~l~e~~~~~~~ssCGsC~LGDAFR   80 (100)
T PF05093_consen    1 EDLKKPDLVSPKDCGPGCKKKRRACKNCTCGLAEEEEAEKKNARAAQQKALKFTEDELTEITVEGKKSSCGSCYLGDAFR   80 (100)
T ss_pred             CCcccCCCcccccccCCccccccccccCCcchHHHhcchhhhhhhhhhhhcccccchhhhhhcccccCccccccccccce
Confidence            68999988888899976  899999999999999998765321         1111     2346899999999999999


Q ss_pred             cCCCCCCCCCCCCCCCeEEe
Q 024162          243 CGTCPYKGLPPFKLGEKVSL  262 (271)
Q Consensus       243 c~~cpy~g~pafkpGe~v~l  262 (271)
                      |+||||||||||||||+|+|
T Consensus        81 Ca~CPYlGlPaFkpGe~V~l  100 (100)
T PF05093_consen   81 CAGCPYLGLPAFKPGEKVKL  100 (100)
T ss_pred             ecCCCcCCCCCCCCCCeecC
Confidence            99999999999999999987

It is found in both the cytoplasm and in the mitochondrial intermembrane space (IMS) []. CIAPIN1 is found to be up-regulated in hepatocellular cancer, is considered to be a downstream effector of the receptor tyrosine kinase-Ras signalling pathway, and is essential in mouse definitive haematopoiesis []. In addition, it has also anti-apoptotic effects in the cell. It is involved in negative control of cell death upon cytokine withdrawal and promotes development of hematopoietic cells [].

>COG5636 Uncharacterized conserved protein, contains Zn-ribbon-like motif [Function unknown]

Probab=100.00  E-value=3.6e-44  Score=306.29  Aligned_cols=239  Identities=28%  Similarity=0.389  Sum_probs=146.9

Q ss_pred             CCccEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC-h-HHHHHHHHH
Q 024162            1 MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-G-DQLLEEISR   78 (271)
Q Consensus         1 ~~~~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~-~-~~~L~ei~R   78 (271)
                      |-..|+|+|+.....+..-...+--.+..+. ..+....+.+..+-+  .+-+.+|.+|+-.-..-|. . .-.|.+-+-
T Consensus         1 ~~~tV~~LT~~~~t~~~~~~K~i~~L~DNGs-~~~L~~I~kV~~LiN--~~IN~~D~~~~~mD~~~~n~Tv~~~L~k~~t   77 (284)
T COG5636           1 KYETVHYLTPEAQTDIKFPKKLISVLADNGS-LIGLSDIYKVDALIN--EIINEPDYCWIKMDSSKLNQTVSIPLKKKKT   77 (284)
T ss_pred             CcceeEEeCCccccchhhhhhhhheeccCcc-ccchHHHHHHHHHHh--hhccCCceEEEEcccchhhccccchhhhhhc
Confidence            4567999999998877666655555543332 111222232222223  3456788888744332222 2 456777777


Q ss_pred             hccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhhhhccccCcceeEEEEEeeCCCcccccccccccCccc-
Q 024162           79 VLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKS-  157 (271)
Q Consensus        79 vLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~~~~~i~a~KPs~~~gss~~l~~~~~~-  157 (271)
                      -|.|||.|-+..-...+..       .+...+.++|...+....  ++            .-|.|.+. +.|++.+.+. 
T Consensus        78 nl~~G~~L~~~~~A~~s~~-------n~~~~A~~S~~~I~~~t~--~~------------~~~~~k~~-t~P~~~~~~d~  135 (284)
T COG5636          78 NLQSGSKLPTFKKASSSTS-------NLPKKADHSRQPIVKETD--SF------------KPPSFKMT-TEPKVYRVVDD  135 (284)
T ss_pred             ccCCCCcccceeccccccc-------cccchhhhcCCceeecCc--cc------------cCCCccce-ecceEEeeccc
Confidence            8999999966543321111       233334445544332221  11            11122111 1122221110 


Q ss_pred             ----------------cccccCCCCCCccCccccCCccccCCCCCCCCCCCCC--CCcccCCCCCccchHHHHHHH----
Q 024162          158 ----------------LAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEV--GSTRKACKNCICGRAEAEEKV----  215 (271)
Q Consensus       158 ----------------~~~~~~d~d~dlided~ll~~~d~~~~~~~~~~~C~~--~~~~~ack~ctcg~~e~~~~~----  215 (271)
                                      ..-+..|+|+++|+||+||+|+--.+-+.  ...|.+  ++|+|||||||||++|+||.+    
T Consensus       136 ~~edk~~~~~~l~S~~q~~~~~dtd~~~i~edEllde~s~d~~i~--~~ec~p~~~kKKrACKdCTCGlkE~eE~E~~rt  213 (284)
T COG5636         136 LMEDKEELRKLLRSKAQYMMRKDTDPRTIMEDELLDEDSEDKAIQ--RSECPPSKTKKKRACKDCTCGLKEEEENEIVRT  213 (284)
T ss_pred             ccccHHHHHHHHhhhhHhhhccCCChhhhhhhhhhccccccceee--cccCCCCcchhhhhcccCCccchhhhhhhhhhh
Confidence                            00123577889999999999953222221  247875  589999999999999999854    


Q ss_pred             ---HhcCCCccccCC--------CCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEecCcc
Q 024162          216 ---EKLGLTMDQLKN--------PQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNF  266 (271)
Q Consensus       216 ---~~~~~~~~~~~~--------~~s~cg~c~lgdafrc~~cpy~g~pafkpGe~v~l~~~~  266 (271)
                         +.++||..++.+        .+|+||||||||||||+||||+|||||+||+.|.++.|.
T Consensus       214 ~Q~~~VK~Te~~~~e~~~~i~~K~Vs~CGnCylGDAFRCSGCPylGlPaf~PGd~v~~~~nl  275 (284)
T COG5636         214 RQDKVVKFTEDELTEIDFTIDGKKVSACGNCYLGDAFRCSGCPYLGLPAFEPGDVVSFSMNL  275 (284)
T ss_pred             hhhhheeccccceeeeeeeeccccccccccccccccceecCCCccCCCCCCCCceeeeeccc
Confidence               357788765432        479999999999999999999999999999999887654

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.35  E-value=3.4e-12  Score=113.83  Aligned_cols=76  Identities=24%  Similarity=0.327  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      ++.|++.+|++...   .....+.|+++++++|||++++||+|.+.+.++++++ +.+|+|++|||||||++++.+....
T Consensus        84 s~~ML~~a~~k~~~---~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p  160 (238)
T COG2226          84 SESMLEVAREKLKK---KGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP  160 (238)
T ss_pred             CHHHHHHHHHHhhc---cCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence            88999999999622   1223399999999999999999999999999999998 9999999999999999999998754

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.23  E-value=2.9e-11  Score=101.48  Aligned_cols=79  Identities=20%  Similarity=0.178  Sum_probs=66.4

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .|+.|++.++++..........++.|++++++++|+++++||+|++.+++|++.+ ..+|+|++|+|||||+|++.++..
T Consensus         5 ~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~   84 (160)
T PLN02232          5 FSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNK   84 (160)
T ss_pred             CCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence            5899999998764211111124689999999999999999999999999999987 899999999999999999998864

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.22  E-value=1.9e-11  Score=108.91  Aligned_cols=76  Identities=25%  Similarity=0.323  Sum_probs=59.0

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .|+.|++.++++...   ....+|.+++++++++||++++||+|++.+.++.+++ ..+|+|++|+|||||+|++.++..
T Consensus        80 ~s~~ML~~a~~k~~~---~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~  156 (233)
T PF01209_consen   80 ISPGMLEVARKKLKR---EGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK  156 (233)
T ss_dssp             S-HHHHHHHHHHHHH---TT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             CCHHHHHHHHHHHHh---hCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence            489999999998532   1224899999999999999999999999999999988 999999999999999999999864

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.22  E-value=8.6e-11  Score=106.22  Aligned_cols=80  Identities=20%  Similarity=0.218  Sum_probs=67.0

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .++.|++.++++..........++.+++++++++|+++++||+|++.+++|++++ ..+++|++|+|||||+|++.++..
T Consensus       106 ~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        106 FSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             CCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence            4889999998774211112234789999999999999999999999999999987 899999999999999999999875


Q ss_pred             C
Q 024162           94 S   94 (271)
Q Consensus        94 ~   94 (271)
                      .
T Consensus       186 ~  186 (261)
T PLN02233        186 S  186 (261)
T ss_pred             C
Confidence            3

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.19  E-value=8.8e-11  Score=87.72  Aligned_cols=68  Identities=32%  Similarity=0.433  Sum_probs=57.1

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i   88 (271)
                      +++.|++.++++...      ..+.+++++++.+|+++++||+|++..++||+.+ ..+++|++|+|||||+++|
T Consensus        27 ~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   27 ISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             S-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence            477899999988522      3455899999999999999999999999999977 9999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.02  E-value=7.8e-10  Score=98.71  Aligned_cols=78  Identities=18%  Similarity=0.195  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .+.|++.+++++....-.....+.|+.+|++.|||++++||+..+.+.+..+.+ +.+|+|.||||||||+|++.++.+
T Consensus       139 np~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk  217 (296)
T KOG1540|consen  139 NPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK  217 (296)
T ss_pred             CHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence            578888888886432223345689999999999999999999999999988876 999999999999999999998864

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.98  E-value=6.7e-09  Score=93.84  Aligned_cols=102  Identities=23%  Similarity=0.328  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      ++.|++.++++...   ....++.+++++++.+++++++||+|++..++|++++ ..++++++|+|||||+|++.++...
T Consensus       111 s~~~l~~A~~~~~~---~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~  187 (272)
T PRK11873        111 TPEMLAKARANARK---AGYTNVEFRLGEIEALPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLR  187 (272)
T ss_pred             CHHHHHHHHHHHHH---cCCCCEEEEEcchhhCCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeecc
Confidence            57888888886421   1124688999999999999999999999999998877 8899999999999999999876432


Q ss_pred             Cc--ccHHH-------------HHHHHHHHHHHcCCcchhh
Q 024162           95 DK--GDVDK-------------AISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        95 ~~--~e~~~-------------~~~~l~~~l~laGF~~v~~  120 (271)
                      ..  ..+..             ..+++...+..+||..+..
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i  228 (272)
T PRK11873        188 GELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI  228 (272)
T ss_pred             CCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence            10  00100             1235556678889987644

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.93  E-value=4.6e-09  Score=91.27  Aligned_cols=89  Identities=20%  Similarity=0.288  Sum_probs=72.8

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeE-EEeccCCCCC-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQII-TQASSLSQLP-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~-~~~~d~e~lp-~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      |.+.|-+.+++....+   ...++. |++++.+++| +++.|||+|+...+++...+ .+.|+++.|+|||||++++.++
T Consensus       107 pn~~mee~~~ks~~E~---k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEH  183 (252)
T KOG4300|consen  107 PNEKMEEIADKSAAEK---KPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEH  183 (252)
T ss_pred             CcHHHHHHHHHHHhhc---cCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            7899999999886332   345677 9999999999 99999999999999988877 9999999999999999999998


Q ss_pred             CCCCcccHHHHHHHH
Q 024162           92 LTSDKGDVDKAISAL  106 (271)
Q Consensus        92 ~~~~~~e~~~~~~~l  106 (271)
                      ..+.-+-+...|++.
T Consensus       184 va~~y~~~n~i~q~v  198 (252)
T KOG4300|consen  184 VAGEYGFWNRILQQV  198 (252)
T ss_pred             ccccchHHHHHHHHH
Confidence            875433344444433

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.90  E-value=9.8e-09  Score=92.92  Aligned_cols=100  Identities=17%  Similarity=0.227  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC--h-HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP--G-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~--~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.++++...     ..++.++.+++...|+++++||+|++..+++|++  + ..++++++|+|||||+|++.++.
T Consensus        84 s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~  158 (263)
T PTZ00098         84 CEKMVNIAKLRNSD-----KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC  158 (263)
T ss_pred             CHHHHHHHHHHcCc-----CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            78889999887521     2568899999999999999999999988777775  4 88999999999999999999875


Q ss_pred             CCCcccHHH--------------HHHHHHHHHHHcCCcchhh
Q 024162           93 TSDKGDVDK--------------AISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        93 ~~~~~e~~~--------------~~~~l~~~l~laGF~~v~~  120 (271)
                      .........              ....+...|..+||.++..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~  200 (263)
T PTZ00098        159 ADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVA  200 (263)
T ss_pred             cccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeE
Confidence            422111111              1134556677888887653

>PLN02244 tocopherol O-methyltransferase

Probab=98.89  E-value=6e-09  Score=97.68  Aligned_cols=76  Identities=22%  Similarity=0.325  Sum_probs=63.6

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.|++.++++....  ....++.|+++|+.++|+++++||+|++..+++|+++ ..++++++|+|||||+|++.++.
T Consensus       149 ~s~~~i~~a~~~~~~~--g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~  225 (340)
T PLN02244        149 LSPVQAARANALAAAQ--GLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC  225 (340)
T ss_pred             CCHHHHHHHHHHHHhc--CCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence            4778888888764211  1224689999999999999999999999999999987 89999999999999999998864

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.89  E-value=4.9e-09  Score=93.56  Aligned_cols=81  Identities=19%  Similarity=0.253  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      ++.|++.++++.        ..+.++++|++.+|+++++||+|+++.++||+.+ ..++.+++|+|||||.|+++.+..+
T Consensus        73 s~~~l~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~  144 (251)
T PRK10258         73 SPPMLAQARQKD--------AADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQG  144 (251)
T ss_pred             CHHHHHHHHhhC--------CCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence            578888888775        2246788999999999999999999999999887 8999999999999999999998866


Q ss_pred             CcccHHHHHH
Q 024162           95 DKGDVDKAIS  104 (271)
Q Consensus        95 ~~~e~~~~~~  104 (271)
                      +..++...|.
T Consensus       145 ~~~el~~~~~  154 (251)
T PRK10258        145 SLPELHQAWQ  154 (251)
T ss_pred             chHHHHHHHH
Confidence            5555554443

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.80  E-value=3e-08  Score=93.08  Aligned_cols=122  Identities=18%  Similarity=0.158  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      ++.|++.++++..      ..++.++.++++++++++++||+|++..+++++++ ..+|++++|+|||||++++......
T Consensus       146 S~~mL~~A~~k~~------~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p  219 (340)
T PLN02490        146 SPHQLAKAKQKEP------LKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHP  219 (340)
T ss_pred             CHHHHHHHHHhhh------ccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCc
Confidence            6788888887642      13577899999999999999999999999998887 8899999999999999988754321


Q ss_pred             C--ccc-HHH------HHHHHHHHHHHcCCcchhhhhhccccC-----cc-eeEEEEEeeCCCc
Q 024162           95 D--KGD-VDK------AISALEGKLLLAGFLDAQRIQLKSVVP-----AE-VVSFGVKGKKPTW  143 (271)
Q Consensus        95 ~--~~e-~~~------~~~~l~~~l~laGF~~v~~~~~~~~~~-----~~-~~~~~i~a~KPs~  143 (271)
                      .  ... ...      ..+++...+..+||..++.....+...     .+ +....++++||.-
T Consensus       220 ~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~~~~~~v~~~k~~~  283 (340)
T PLN02490        220 TFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPAS  283 (340)
T ss_pred             chhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhhccccccccceeeEEEEEecccc
Confidence            0  000 000      124666778899999876543322111     11 1235678888764

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.77  E-value=6.1e-08  Score=85.20  Aligned_cols=75  Identities=23%  Similarity=0.278  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      ++.|++.++++...   ....++.++.++++.+++++++||+|++...++++++ ..++++++|+|||||++++.+...
T Consensus        79 s~~~~~~a~~~~~~---~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~  154 (231)
T TIGR02752        79 SENMLSVGRQKVKD---AGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ  154 (231)
T ss_pred             CHHHHHHHHHHHHh---cCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence            56888888876421   1224688999999999999999999999988998887 889999999999999999987643

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.62  E-value=2.4e-07  Score=90.23  Aligned_cols=99  Identities=18%  Similarity=0.190  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      ++.|++.++++..    ....++.|.++++..+++++++||+|++..+++|+.+ ..++++++|+|||||+|++.++...
T Consensus       298 S~~~l~~A~~~~~----~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  373 (475)
T PLN02336        298 SVNMISFALERAI----GRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRS  373 (475)
T ss_pred             CHHHHHHHHHHhh----cCCCceEEEEcCcccCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence            6788888887642    1224689999999999999999999999999999987 8999999999999999999987542


Q ss_pred             Cc---ccHHH----------HHHHHHHHHHHcCCcch
Q 024162           95 DK---GDVDK----------AISALEGKLLLAGFLDA  118 (271)
Q Consensus        95 ~~---~e~~~----------~~~~l~~~l~laGF~~v  118 (271)
                      ..   .....          ..+.+...+..+||..+
T Consensus       374 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i  410 (475)
T PLN02336        374 PGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDV  410 (475)
T ss_pred             CCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeee
Confidence            11   01110          12244566777888765

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.55  E-value=1.1e-07  Score=88.76  Aligned_cols=77  Identities=17%  Similarity=0.202  Sum_probs=64.8

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .++.|++.++++....  ....++.+++++++++++.+++||+|++..+++|+.+ ..++++++|+|||||.|++.+...
T Consensus       161 ~s~~~i~~Ar~~~~~~--~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr  238 (322)
T PLN02396        161 AVDKNVKIARLHADMD--PVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINR  238 (322)
T ss_pred             CCHHHHHHHHHHHHhc--CcccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence            4788999998764211  1124689999999999998899999999999999987 999999999999999999998654

>TIGR00740 methyltransferase, putative

Probab=98.53  E-value=5.1e-07  Score=80.10  Aligned_cols=74  Identities=15%  Similarity=0.224  Sum_probs=60.0

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .++.|++.++++....  ....++.++++++..++++  .+|+|++.+++||+++   ..++++++|+|||||.|++.+.
T Consensus        87 ~s~~ml~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~  162 (239)
T TIGR00740        87 NSQPMVERCRQHIAAY--HSEIPVEILCNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK  162 (239)
T ss_pred             CCHHHHHHHHHHHHhc--CCCCCeEEEECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence            4789999998874211  1224688999999998876  4899999999999874   6799999999999999999986


Q ss_pred             C
Q 024162           92 L   92 (271)
Q Consensus        92 ~   92 (271)
                      .
T Consensus       163 ~  163 (239)
T TIGR00740       163 F  163 (239)
T ss_pred             c
Confidence            4

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.50  E-value=3.8e-07  Score=85.02  Aligned_cols=105  Identities=21%  Similarity=0.263  Sum_probs=73.2

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      ++..|+..++.....  .....++.++.++++++|+ +++||+|++..++||..+ ..+|++++|+|||||.|++.++..
T Consensus       153 ~S~~~l~q~~a~~~~--~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i  229 (322)
T PRK15068        153 PSQLFLCQFEAVRKL--LGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVI  229 (322)
T ss_pred             CCHHHHHHHHHHHHh--cCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEe
Confidence            456666554432110  0112468999999999999 889999999999998877 899999999999999999876432


Q ss_pred             CCcc--------cH---H-----HHHHHHHHHHHHcCCcchhhhh
Q 024162           94 SDKG--------DV---D-----KAISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus        94 ~~~~--------e~---~-----~~~~~l~~~l~laGF~~v~~~~  122 (271)
                      ....        ..   +     .....+...|..+||.+++...
T Consensus       230 ~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~  274 (322)
T PRK15068        230 DGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD  274 (322)
T ss_pred             cCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence            1000        00   0     0224667788899998876543

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.50  E-value=1.5e-07  Score=83.24  Aligned_cols=96  Identities=21%  Similarity=0.290  Sum_probs=68.8

Q ss_pred             CeEEEeccCCCC--CCCCCceeEEEec---cc-cccCChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHH
Q 024162           37 QIITQASSLSQL--PVESFSIDTVLSI---SS-SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKL  110 (271)
Q Consensus        37 ~v~~~~~d~e~l--p~~~~sfD~V~s~---~~-l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l  110 (271)
                      .|..+.+|+.++  .|+|+|||+|+.-   ++ ..++...+++.|++|+|||||+++.+...++....-......+.+.|
T Consensus       186 ~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RL  265 (287)
T COG2521         186 AIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERL  265 (287)
T ss_pred             ccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHH
Confidence            467788888655  5899999999972   22 22455699999999999999999999887653211111223667789


Q ss_pred             HHcCCcchhhhhhccccCcceeEEEEEeeCC
Q 024162          111 LLAGFLDAQRIQLKSVVPAEVVSFGVKGKKP  141 (271)
Q Consensus       111 ~laGF~~v~~~~~~~~~~~~~~~~~i~a~KP  141 (271)
                      ...||..+.....         .+.+.|.||
T Consensus       266 r~vGF~~v~~~~~---------~~gv~A~k~  287 (287)
T COG2521         266 RRVGFEVVKKVRE---------ALGVVAVKP  287 (287)
T ss_pred             HhcCceeeeeehh---------ccceEEecC
Confidence            9999998776653         345777765

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.46  E-value=1.1e-06  Score=76.62  Aligned_cols=73  Identities=23%  Similarity=0.277  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      +..|++.++++..       .++.++.++++.+++++++||+|++..++||+.+ ..++.++.++|||||.|++.++...
T Consensus        67 ~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~  139 (240)
T TIGR02072        67 SAGMLAQAKTKLS-------ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPG  139 (240)
T ss_pred             hHHHHHHHHHhcC-------CCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            5677777776642       3578899999999999999999999999999976 8999999999999999999987754


Q ss_pred             C
Q 024162           95 D   95 (271)
Q Consensus        95 ~   95 (271)
                      .
T Consensus       140 ~  140 (240)
T TIGR02072       140 T  140 (240)
T ss_pred             C
Confidence            3

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.44  E-value=7.5e-07  Score=73.47  Aligned_cols=73  Identities=25%  Similarity=0.417  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.++++...   ....++.|.++++++++  ++ +.||+|++..+++++.+ ..+++++.|+||+||.+++.+..
T Consensus        37 s~~~i~~a~~~~~~---~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   37 SEEMIEYAKKRAKE---LGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             SHHHHHHHHHHHHH---TTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cHHHHHHhhccccc---ccccccceEEeehhccccccC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            67888888886421   12247999999999988  66 89999999999999988 78999999999999999999876

...

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.42  E-value=1.4e-06  Score=77.95  Aligned_cols=74  Identities=19%  Similarity=0.294  Sum_probs=60.3

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      +++.|++.++++....  ....++.++++++..+|++  .||+|+++.++|++++   ..++++++|+|||||.|++.+.
T Consensus        90 ~S~~ml~~A~~~~~~~--~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~  165 (247)
T PRK15451         90 NSPAMIERCRRHIDAY--KAPTPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK  165 (247)
T ss_pred             CCHHHHHHHHHHHHhc--CCCCCeEEEeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            5899999999885221  1224688999999988875  4999999999999875   6799999999999999999985


Q ss_pred             C
Q 024162           92 L   92 (271)
Q Consensus        92 ~   92 (271)
                      .
T Consensus       166 ~  166 (247)
T PRK15451        166 F  166 (247)
T ss_pred             c
Confidence            4

>TIGR00452 methyltransferase, putative

Probab=98.42  E-value=7e-07  Score=83.03  Aligned_cols=104  Identities=19%  Similarity=0.224  Sum_probs=70.6

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      ++..|+.+++.....  ......+.+...+++++|.. .+||+|+++.+++|+.+ ..+|++++|+|||||.|++.+...
T Consensus       152 pS~~ml~q~~~~~~~--~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i  228 (314)
T TIGR00452       152 PTVLFLCQFEAVRKL--LDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVI  228 (314)
T ss_pred             CCHHHHHHHHHHHHH--hccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEe
Confidence            466677654432110  01124577788889998864 48999999999999887 899999999999999999976432


Q ss_pred             CC-c-------ccHHH--------HHHHHHHHHHHcCCcchhhh
Q 024162           94 SD-K-------GDVDK--------AISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        94 ~~-~-------~e~~~--------~~~~l~~~l~laGF~~v~~~  121 (271)
                      .. .       .....        ....+...+..+||.+++..
T Consensus       229 ~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~  272 (314)
T TIGR00452       229 DGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL  272 (314)
T ss_pred             cCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence            10 0       00000        12456677888999887654

Known examples to date are restricted to the proteobacteria.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.41  E-value=5.1e-07  Score=80.97  Aligned_cols=66  Identities=20%  Similarity=0.229  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.++++.          +.++++++++++ ++++||+|++..++||+++ ..++++++|+|||||+|++..+.
T Consensus        62 s~~~~~~a~~~~----------~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103         62 SPEMVAAARERG----------VDARTGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             CHHHHHHHHhcC----------CcEEEcChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            678888887542          567889998875 5679999999999999987 89999999999999999998654

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.39  E-value=4e-06  Score=73.22  Aligned_cols=75  Identities=25%  Similarity=0.326  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.+++.++++....  ....++.+..+++..++++.++||+|++...+|++.+ ..+|.++.++|+|||++++.+..
T Consensus        85 s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~  160 (239)
T PRK00216         85 SEGMLAVGREKLRDL--GLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS  160 (239)
T ss_pred             CHHHHHHHHHhhccc--ccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence            567777777764211  1234688899999998888889999999888888877 89999999999999999988754

>PRK08317 hypothetical protein; Provisional

Probab=98.38  E-value=2.8e-06  Score=73.85  Aligned_cols=73  Identities=26%  Similarity=0.361  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.+++.++++..    ....++.+..+++..+++++++||+|++...++++.+ ..++++++++|||||.+++.+..
T Consensus        53 ~~~~~~~a~~~~~----~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  126 (241)
T PRK08317         53 SEAMLALAKERAA----GLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD  126 (241)
T ss_pred             CHHHHHHHHHHhh----CCCCceEEEecccccCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence            5677777777621    1235688999999999999999999999999999877 88999999999999999988753

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.35  E-value=1.5e-06  Score=76.03  Aligned_cols=103  Identities=15%  Similarity=0.112  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      ++.+++.++++....  ....++.+...++...|++ ++||+|++..+++++.+ ..++++++++|||||++++.+....
T Consensus        32 s~~~~~~a~~~~~~~--gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  108 (224)
T smart00828       32 SPEQAEVGRERIRAL--GLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIAN  108 (224)
T ss_pred             CHHHHHHHHHHHHhc--CCCcceEEEecccccCCCC-CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccc
Confidence            788888888874211  1234688888998777775 48999999999999887 8999999999999999999886421


Q ss_pred             Cc---c--cHH---HHHHHHHHHHHHcCCcchhhh
Q 024162           95 DK---G--DVD---KAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        95 ~~---~--e~~---~~~~~l~~~l~laGF~~v~~~  121 (271)
                      ..   .  ...   .....+...+..+||..+...
T Consensus       109 ~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~  143 (224)
T smart00828      109 LLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV  143 (224)
T ss_pred             cCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence            10   0  000   012345566788999876544

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.31  E-value=1.3e-06  Score=79.26  Aligned_cols=67  Identities=24%  Similarity=0.349  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD   95 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~   95 (271)
                      +..|++.++++.        .++.|.++++.++|+++++||+|++++..      ..+.|++|+|||||+|++..+...+
T Consensus       121 s~~~l~~A~~~~--------~~~~~~~~d~~~lp~~~~sfD~I~~~~~~------~~~~e~~rvLkpgG~li~~~p~~~~  186 (272)
T PRK11088        121 SKVAIKYAAKRY--------PQVTFCVASSHRLPFADQSLDAIIRIYAP------CKAEELARVVKPGGIVITVTPGPRH  186 (272)
T ss_pred             CHHHHHHHHHhC--------CCCeEEEeecccCCCcCCceeEEEEecCC------CCHHHHHhhccCCCEEEEEeCCCcc
Confidence            678888887664        45788999999999999999999987542      3468999999999999999877544


Q ss_pred             c
Q 024162           96 K   96 (271)
Q Consensus        96 ~   96 (271)
                      .
T Consensus       187 l  187 (272)
T PRK11088        187 L  187 (272)
T ss_pred             h
Confidence            3

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.31  E-value=7.9e-07  Score=68.31  Aligned_cols=65  Identities=28%  Similarity=0.414  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEec-cccccCCh---HHHHHHHHHhccCCc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SSSHELPG---DQLLEEISRVLKPGG   84 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~-~~l~~~~~---~~~L~ei~RvLKPGG   84 (271)
                      ++.|++.++++...    .+.++.|+++|+.++++.+++||+|++. .+++|+.+   ..++++++++|||||
T Consensus        33 s~~~l~~~~~~~~~----~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   33 SPEMLELAKKRFSE----DGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             -HHHHHHHHHHSHH----TTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CHHHHHHHHHhchh----cCCceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            78999999988632    2358899999999999999999999995 44888875   889999999999998

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.30  E-value=9.2e-07  Score=79.37  Aligned_cols=77  Identities=10%  Similarity=0.171  Sum_probs=61.9

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.|++.++++....  ....++.++++++.+++ +.+++||+|++..+++|+.+ ..++++++|+|||||+|++..+.
T Consensus        74 ~s~~~l~~a~~~~~~~--g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n  151 (255)
T PRK11036         74 LSAEMIQRAKQAAEAK--GVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYN  151 (255)
T ss_pred             CCHHHHHHHHHHHHhc--CCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence            4788999988874211  12246889999998774 67789999999999999976 88999999999999999988765


Q ss_pred             C
Q 024162           93 T   93 (271)
Q Consensus        93 ~   93 (271)
                      .
T Consensus       152 ~  152 (255)
T PRK11036        152 A  152 (255)
T ss_pred             c
Confidence            3

>PRK05785 hypothetical protein; Provisional

Probab=98.29  E-value=1.5e-06  Score=77.05  Aligned_cols=58  Identities=21%  Similarity=0.224  Sum_probs=50.9

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPG   83 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPG   83 (271)
                      .++.|++.++++.           .+++++++.+|+++++||+|++.+++|++.+ +.+++|++|+|||.
T Consensus        82 ~S~~Ml~~a~~~~-----------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785         82 YAENMLKMNLVAD-----------DKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             CCHHHHHHHHhcc-----------ceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence            4889999888653           2467899999999999999999999999987 89999999999994

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.26  E-value=1.2e-05  Score=69.37  Aligned_cols=72  Identities=26%  Similarity=0.347  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.+++.++++..     ...++.++.+++.+++++.+.||+|++...+++..+ ..+++++.++|+|||++++.+..
T Consensus        73 ~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934        73 SSEMLEVAKKKSE-----LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             CHHHHHHHHHHhc-----cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence            4677777776642     224678889999999988889999999988888877 89999999999999999998754

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.25  E-value=2.7e-06  Score=76.06  Aligned_cols=69  Identities=19%  Similarity=0.282  Sum_probs=57.6

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.|++.++++.        .++.++.+++..+. +..+||+|+++.++||+.+ ..++++++|+|||||+|++..+.
T Consensus        63 ~s~~~i~~a~~~~--------~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~  132 (258)
T PRK01683         63 SSPAMLAEARSRL--------PDCQFVEADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD  132 (258)
T ss_pred             CCHHHHHHHHHhC--------CCCeEEECchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence            4678888888774        34678889988764 4569999999999999987 89999999999999999997543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.22  E-value=3.9e-06  Score=72.67  Aligned_cols=71  Identities=21%  Similarity=0.246  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ++.|++.++++...   ....++.+..+++..++++ .+||+|++..++|+++.   ..++++++|+|||||++++..
T Consensus        61 S~~~i~~a~~~~~~---~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~  134 (197)
T PRK11207         61 NPMSIANLERIKAA---ENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  134 (197)
T ss_pred             CHHHHHHHHHHHHH---cCCCcceEEecChhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            67788888876421   1113478888899888775 57999999999888763   789999999999999976543

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.18  E-value=3.7e-06  Score=76.26  Aligned_cols=55  Identities=16%  Similarity=0.210  Sum_probs=49.5

Q ss_pred             CeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           37 QIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        37 ~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .|.|.++++.+.+++.++||+|++.++++|+++   ..++++++++|+|||+|++-..
T Consensus       186 ~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~  243 (264)
T smart00138      186 RVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS  243 (264)
T ss_pred             cCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence            689999999998888899999999999999974   5799999999999999998653

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.17  E-value=1.4e-06  Score=77.56  Aligned_cols=75  Identities=13%  Similarity=0.248  Sum_probs=64.4

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .++.+++.|+.++.    .....+.|.+..++++....++||+|++.-+++|+++ +.+++.+.+.+||||.+++++...
T Consensus        89 ~se~~I~~Ak~ha~----e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227          89 ASEKPIEVAKLHAL----ESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             CChHHHHHHHHhhh----hccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence            37788999998852    2335678999999998877789999999999999998 889999999999999999999874

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.16  E-value=1.5e-06  Score=76.97  Aligned_cols=81  Identities=16%  Similarity=0.071  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      |..|++.++..+.     ....+.+.++|-|.++|.+++||+|+++.++||..+ +..+.++..+|||+|.|+-+..+.+
T Consensus       104 S~~M~~s~~~~qd-----p~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasmlggd  178 (325)
T KOG2940|consen  104 SYDMIKSCRDAQD-----PSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGD  178 (325)
T ss_pred             chHHHHHhhccCC-----CceEEEEEecchhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccc
Confidence            5677777776643     235677889999999999999999999999999988 9999999999999999999888766


Q ss_pred             CcccHHH
Q 024162           95 DKGDVDK  101 (271)
Q Consensus        95 ~~~e~~~  101 (271)
                      ++.+++.
T Consensus       179 TLyELR~  185 (325)
T KOG2940|consen  179 TLYELRC  185 (325)
T ss_pred             cHHHHHH
Confidence            6555554

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.13  E-value=1.1e-05  Score=70.15  Aligned_cols=93  Identities=15%  Similarity=0.018  Sum_probs=66.4

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccC-CCCC--CCCCceeEEEeccccccCC---------hHHHHHHHHHhccC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSL-SQLP--VESFSIDTVLSISSSHELP---------GDQLLEEISRVLKP   82 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~-e~lp--~~~~sfD~V~s~~~l~~~~---------~~~~L~ei~RvLKP   82 (271)
                      .++.|++.++++....   ...++.++++++ +.++  +++++||+|++.+...|..         ...++++++|+|||
T Consensus        72 ~s~~~i~~a~~~~~~~---~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp  148 (202)
T PRK00121         72 VHEPGVGKALKKIEEE---GLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKP  148 (202)
T ss_pred             echHHHHHHHHHHHHc---CCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCC
Confidence            3677888888764211   124688999999 7777  7888999999876544432         26799999999999


Q ss_pred             CcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcc
Q 024162           83 GGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  117 (271)
Q Consensus        83 GG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~  117 (271)
                      ||.|++.....       .....+...+..+||..
T Consensus       149 gG~l~i~~~~~-------~~~~~~~~~~~~~g~~~  176 (202)
T PRK00121        149 GGEIHFATDWE-------GYAEYMLEVLSAEGGFL  176 (202)
T ss_pred             CCEEEEEcCCH-------HHHHHHHHHHHhCcccc
Confidence            99999987542       12234556677778754

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.09  E-value=3.7e-05  Score=66.37  Aligned_cols=90  Identities=17%  Similarity=0.168  Sum_probs=64.5

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .++.|++.++++....   ...++.++.+++++++. .++||+|++..    +.+ +.++++++++|||||+|++.....
T Consensus        77 ~s~~~l~~A~~~~~~~---~l~~i~~~~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~  148 (187)
T PRK00107         77 SLGKKIAFLREVAAEL---GLKNVTVVHGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGRD  148 (187)
T ss_pred             CcHHHHHHHHHHHHHc---CCCCEEEEeccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            4788888888764221   12348999999999887 77999999864    233 789999999999999999987542


Q ss_pred             CCcccHHHHHHHHHHHHHHcCCcchhh
Q 024162           94 SDKGDVDKAISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        94 ~~~~e~~~~~~~l~~~l~laGF~~v~~  120 (271)
                           ..   ..+......+|..-...
T Consensus       149 -----~~---~~l~~~~~~~~~~~~~~  167 (187)
T PRK00107        149 -----PE---EEIAELPKALGGKVEEV  167 (187)
T ss_pred             -----hH---HHHHHHHHhcCceEeee
Confidence                 11   13445556668774433

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.08  E-value=1.4e-05  Score=61.81  Aligned_cols=73  Identities=26%  Similarity=0.321  Sum_probs=54.6

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccC-CCCCCCCCceeEEEecc-ccccCC---h-HHHHHHHHHhccCCcEEEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSL-SQLPVESFSIDTVLSIS-SSHELP---G-DQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~-e~lp~~~~sfD~V~s~~-~l~~~~---~-~~~L~ei~RvLKPGG~l~i   88 (271)
                      .++.|++.++++...  .....++.++++++ ....+ ...||+|++.. .++++.   . ..+++++++.|+|||+|++
T Consensus        33 ~s~~~~~~a~~~~~~--~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi  109 (112)
T PF12847_consen   33 ISPEMLEIARERAAE--EGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI  109 (112)
T ss_dssp             SSHHHHHHHHHHHHH--TTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHh--cCCCCCeEEEECccccCccc-CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence            478899999987521  12347899999999 33333 34699999988 555332   2 7899999999999999998


Q ss_pred             Ee
Q 024162           89 YK   90 (271)
Q Consensus        89 ~~   90 (271)
                      .+
T Consensus       110 ~~  111 (112)
T PF12847_consen  110 NT  111 (112)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

...

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.08  E-value=2.9e-05  Score=71.44  Aligned_cols=72  Identities=13%  Similarity=0.169  Sum_probs=55.2

Q ss_pred             HHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162           17 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        17 ~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      +.|++.++++....  ....+|.++.+|+...+++.  +|+|+....+|++.+   ..+|++++++|||||+|++.+..
T Consensus       182 ~~~~~~a~~~~~~~--gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~  256 (306)
T TIGR02716       182 PGAIDLVNENAAEK--GVADRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV  256 (306)
T ss_pred             HHHHHHHHHHHHhC--CccceEEEEecCccCCCCCC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            46788887764211  12246899999997766654  699998888888765   46999999999999999999863

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.07  E-value=9.6e-07  Score=67.33  Aligned_cols=34  Identities=38%  Similarity=0.622  Sum_probs=24.0

Q ss_pred             CceeEEEeccccccCCh-HHHHHHHHHhccCCcEE
Q 024162           53 FSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTI   86 (271)
Q Consensus        53 ~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l   86 (271)
                      ++||+|+++.++||+.+ ..+++.++++|||||+|
T Consensus        65 ~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   65 ESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ---SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             cccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            69999999999999977 99999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.07  E-value=1.5e-05  Score=77.65  Aligned_cols=101  Identities=15%  Similarity=0.139  Sum_probs=70.9

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCC--CCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLS--QLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e--~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~   89 (271)
                      .+..|++.+++...     ...++.++++++.  .+|+++++||+|++..++||+++   ..++++++|+|||||++++.
T Consensus        67 ~s~~~l~~a~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336         67 FIESVIKKNESING-----HYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             CCHHHHHHHHHHhc-----cCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            46677776655431     1256888999986  57888999999999999999876   68999999999999999998


Q ss_pred             ecCCCCcc--------cHHHHHHHHHHHHHHcCCcchhh
Q 024162           90 KKLTSDKG--------DVDKAISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        90 ~~~~~~~~--------e~~~~~~~l~~~l~laGF~~v~~  120 (271)
                      +.......        ..........+.+..+||.....
T Consensus       142 d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  180 (475)
T PLN02336        142 ESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDG  180 (475)
T ss_pred             eccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCC
Confidence            75422110        11111234455678888886543

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.06  E-value=1.6e-05  Score=68.67  Aligned_cols=71  Identities=17%  Similarity=0.227  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      ++.|++.++++...    .+..+.+...++...+++ ++||+|++..++|+++.   ..++++++|+|||||++++.++
T Consensus        61 s~~~l~~a~~~~~~----~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~  134 (195)
T TIGR00477        61 NPASIASVLDMKAR----ENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA  134 (195)
T ss_pred             CHHHHHHHHHHHHH----hCCCceeEeccchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence            56788877766421    123467777888776765 57999999988888863   7899999999999999777654

Part of a tellurite-reducing operon tehA and tehB

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.01  E-value=5e-06  Score=67.99  Aligned_cols=49  Identities=31%  Similarity=0.518  Sum_probs=44.2

Q ss_pred             CCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           45 LSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        45 ~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      ....++++++||+|+++.+++|+++ ..+|++++++|||||.+++.++..
T Consensus        69 ~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   69 AQDPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             CHTHHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             hhhhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            3455677899999999999999998 999999999999999999999874

...

>PRK04266 fibrillarin; Provisional

Probab=97.98  E-value=8.2e-05  Score=66.12  Aligned_cols=83  Identities=18%  Similarity=0.183  Sum_probs=54.0

Q ss_pred             CCeEEEeccCCCC----CCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEE------ecCCCCcccHHHHHHH
Q 024162           36 PQIITQASSLSQL----PVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY------KKLTSDKGDVDKAISA  105 (271)
Q Consensus        36 ~~v~~~~~d~e~l----p~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~------~~~~~~~~e~~~~~~~  105 (271)
                      .++.++.+++...    ++. ++||+|++..... .....++++++|+|||||+|++.      ++..    ...+..+.
T Consensus       120 ~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~~~p-~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~----~~~~~~~~  193 (226)
T PRK04266        120 KNIIPILADARKPERYAHVV-EKVDVIYQDVAQP-NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK----DPKEIFKE  193 (226)
T ss_pred             CCcEEEECCCCCcchhhhcc-ccCCEEEECCCCh-hHHHHHHHHHHHhcCCCcEEEEEEecccccCcC----CHHHHHHH
Confidence            4577888888642    233 5699999643211 01145689999999999999993      3332    11222334


Q ss_pred             HHHHHHHcCCcchhhhhhc
Q 024162          106 LEGKLLLAGFLDAQRIQLK  124 (271)
Q Consensus       106 l~~~l~laGF~~v~~~~~~  124 (271)
                      ....+..+||..++.....
T Consensus       194 ~~~~l~~aGF~~i~~~~l~  212 (226)
T PRK04266        194 EIRKLEEGGFEILEVVDLE  212 (226)
T ss_pred             HHHHHHHcCCeEEEEEcCC
Confidence            5578889999988776543

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.96  E-value=2.1e-05  Score=70.89  Aligned_cols=77  Identities=25%  Similarity=0.306  Sum_probs=60.2

Q ss_pred             EEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchh
Q 024162           40 TQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  119 (271)
Q Consensus        40 ~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~  119 (271)
                      .+..|+.++|++++|.|+++...++.-..-..++.|++|||||||.|+|.+...+. .+.    ..+.+.+...||-..+
T Consensus       214 V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf-~dv----~~f~r~l~~lGF~~~~  288 (325)
T KOG3045|consen  214 VIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRF-SDV----KGFVRALTKLGFDVKH  288 (325)
T ss_pred             eeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhc-ccH----HHHHHHHHHcCCeeee
Confidence            46689999999999999998876655444489999999999999999999976431 122    2467889999998655


Q ss_pred             hh
Q 024162          120 RI  121 (271)
Q Consensus       120 ~~  121 (271)
                      ..
T Consensus       289 ~d  290 (325)
T KOG3045|consen  289 KD  290 (325)
T ss_pred             hh
Confidence            43

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.95  E-value=1.6e-05  Score=69.65  Aligned_cols=75  Identities=25%  Similarity=0.309  Sum_probs=52.0

Q ss_pred             EeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhh
Q 024162           41 QASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        41 ~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~  120 (271)
                      .++|+.++|++++++|+++...++....=..++.|.+|+|||||.|.|.+...+- ...    +.+.+.+..-||.....
T Consensus       109 tacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf-~~~----~~F~~~~~~~GF~~~~~  183 (219)
T PF05148_consen  109 TACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRF-ENV----KQFIKALKKLGFKLKSK  183 (219)
T ss_dssp             EES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG--S-H----HHHHHHHHCTTEEEEEE
T ss_pred             EEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccC-cCH----HHHHHHHHHCCCeEEec
Confidence            5689999999999999999877665554489999999999999999999986421 122    35667788889987654

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK06922 hypothetical protein; Provisional

Probab=97.95  E-value=1.9e-05  Score=79.56  Aligned_cols=73  Identities=26%  Similarity=0.307  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEeccccccCC-------------h-HHHHHHHHHh
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSSHELP-------------G-DQLLEEISRV   79 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~l~~~~-------------~-~~~L~ei~Rv   79 (271)
                      ++.|++.++++..    ..+.++.++++++.++|  +++++||+|+++..+|++.             + ..+|++++|+
T Consensus       451 S~~MLe~Ararl~----~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RV  526 (677)
T PRK06922        451 SENVIDTLKKKKQ----NEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEV  526 (677)
T ss_pred             CHHHHHHHHHHhh----hcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHH
Confidence            6778888887642    12246778889998888  8899999999988887652             2 7899999999


Q ss_pred             ccCCcEEEEEecC
Q 024162           80 LKPGGTILIYKKL   92 (271)
Q Consensus        80 LKPGG~l~i~~~~   92 (271)
                      |||||++++.+..
T Consensus       527 LKPGGrLII~D~v  539 (677)
T PRK06922        527 LKPGGRIIIRDGI  539 (677)
T ss_pred             cCCCcEEEEEeCc
Confidence            9999999999853

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.91  E-value=5.2e-05  Score=65.40  Aligned_cols=74  Identities=16%  Similarity=0.125  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC---CCCCceeEEEeccccccCC---------hHHHHHHHHHhccCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP---VESFSIDTVLSISSSHELP---------GDQLLEEISRVLKPG   83 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp---~~~~sfD~V~s~~~l~~~~---------~~~~L~ei~RvLKPG   83 (271)
                      +..|++.++++...   ....++.++++++..++   +++++||.|++++...|..         ...++++++|+||||
T Consensus        49 ~~~~l~~a~~~~~~---~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg  125 (194)
T TIGR00091        49 HTPIVLAANNKANK---LGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKG  125 (194)
T ss_pred             eHHHHHHHHHHHHH---hCCCCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCC
Confidence            57777777766421   11247899999997654   5667999999977554432         157999999999999


Q ss_pred             cEEEEEecC
Q 024162           84 GTILIYKKL   92 (271)
Q Consensus        84 G~l~i~~~~   92 (271)
                      |.|++.+..
T Consensus       126 G~l~~~td~  134 (194)
T TIGR00091       126 GVIHFKTDN  134 (194)
T ss_pred             CEEEEEeCC
Confidence            999998754

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.91  E-value=6.4e-05  Score=64.42  Aligned_cols=94  Identities=19%  Similarity=0.169  Sum_probs=63.3

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      .++.|++.+++..+..   ...++.++++++++++ ..++||+|++.. +++  -..+++.++|+|||||++++..... 
T Consensus        74 ~s~~~~~~a~~~~~~~---~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~~--~~~~~~~~~~~LkpgG~lvi~~~~~-  145 (181)
T TIGR00138        74 SNHKKVAFLREVKAEL---GLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LAS--LNVLLELTLNLLKVGGYFLAYKGKK-  145 (181)
T ss_pred             CcHHHHHHHHHHHHHh---CCCCeEEEecchhhcc-ccCCccEEEehh-hhC--HHHHHHHHHHhcCCCCEEEEEcCCC-
Confidence            4667777777653211   1135899999999875 367999999865 222  2678899999999999999885431 


Q ss_pred             CcccHHHHHHHHHHHHHHcCCcchhh
Q 024162           95 DKGDVDKAISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        95 ~~~e~~~~~~~l~~~l~laGF~~v~~  120 (271)
                      .   .. .+..+...+...||..+..
T Consensus       146 ~---~~-~~~~~~e~~~~~~~~~~~~  167 (181)
T TIGR00138       146 Y---LD-EIEEAKRKCQVLGVEPLEV  167 (181)
T ss_pred             c---HH-HHHHHHHhhhhcCceEeec
Confidence            1   11 1224445667788886654

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=97.89  E-value=4.8e-05  Score=69.57  Aligned_cols=70  Identities=17%  Similarity=0.227  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ++.|++.++++...    .+.++.+...++...++ +++||+|++..++|+++.   ..++++++|+|+|||++++..
T Consensus       151 s~~ai~~~~~~~~~----~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        151 NQQSLENLQEIAEK----ENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             CHHHHHHHHHHHHH----cCCceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            56777777766421    22467888888877666 678999999999998863   789999999999999977654

>PTZ00146 fibrillarin; Provisional

Probab=97.87  E-value=0.00028  Score=65.00  Aligned_cols=111  Identities=14%  Similarity=0.124  Sum_probs=69.4

Q ss_pred             cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCC---CCCCCCceeEEEeccccccCCh-HHHHHHHHHh
Q 024162            4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ---LPVESFSIDTVLSISSSHELPG-DQLLEEISRV   79 (271)
Q Consensus         4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~---lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~Rv   79 (271)
                      +.++.+|.+....+.|++.++.+         .+|.++.+|+..   +.+...+||+|++...  ...+ ..++.+++|+
T Consensus       158 G~VyAVD~s~r~~~dLl~~ak~r---------~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~  226 (293)
T PTZ00146        158 GVVYAVEFSHRSGRDLTNMAKKR---------PNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYF  226 (293)
T ss_pred             CEEEEEECcHHHHHHHHHHhhhc---------CCCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHh
Confidence            45677776644455677666544         346777888753   2233458999998664  2223 5677799999


Q ss_pred             ccCCcEEEEEecCCCC-c-ccHHHHHHHHHHHHHHcCCcchhhhhhcc
Q 024162           80 LKPGGTILIYKKLTSD-K-GDVDKAISALEGKLLLAGFLDAQRIQLKS  125 (271)
Q Consensus        80 LKPGG~l~i~~~~~~~-~-~e~~~~~~~l~~~l~laGF~~v~~~~~~~  125 (271)
                      |||||+|++....... . ......+++-...|..+||..++.....|
T Consensus       227 LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~P  274 (293)
T PTZ00146        227 LKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEP  274 (293)
T ss_pred             ccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCC
Confidence            9999999994322111 1 12222222223678899999887776544

>PLN03075 nicotianamine synthase; Provisional

Probab=97.87  E-value=4.1e-05  Score=70.58  Aligned_cols=73  Identities=10%  Similarity=0.192  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC--h-HHHHHHHHHhccCCcEEEEEe
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP--G-DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~--~-~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ++.+++.||+..... .....+|.|.++|+.+++-..+.||+|++. +++++.  + ..++.++++.|+|||.|++..
T Consensus       158 d~~ai~~Ar~~~~~~-~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        158 DPSANDVARRLVSSD-PDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             CHHHHHHHHHHhhhc-cCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            678888888875211 122356999999998764345789999999 777773  3 999999999999999999987

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=97.83  E-value=7.9e-05  Score=64.68  Aligned_cols=78  Identities=19%  Similarity=0.234  Sum_probs=61.3

Q ss_pred             EEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccC
Q 024162            6 LALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKP   82 (271)
Q Consensus         6 l~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKP   82 (271)
                      ..+||.+...++.+.+++++.+        ..|.+.+.|++...++ ..||+|++..++++++.   +.++..|...++|
T Consensus        55 VtAvD~s~~al~~l~~~a~~~~--------l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~p  125 (192)
T PF03848_consen   55 VTAVDISPVALEKLQRLAEEEG--------LDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKP  125 (192)
T ss_dssp             EEEEESSHHHHHHHHHHHHHTT---------TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEE
T ss_pred             EEEEECCHHHHHHHHHHHhhcC--------ceeEEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCC
Confidence            3567888888888777777655        5689999999988885 68999999888888875   7899999999999


Q ss_pred             CcEEEEEecC
Q 024162           83 GGTILIYKKL   92 (271)
Q Consensus        83 GG~l~i~~~~   92 (271)
                      ||.+++....
T Consensus       126 GG~~li~~~~  135 (192)
T PF03848_consen  126 GGYNLIVTFM  135 (192)
T ss_dssp             EEEEEEEEEB
T ss_pred             cEEEEEEEec
Confidence            9999886643

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.77  E-value=9.1e-05  Score=64.35  Aligned_cols=71  Identities=14%  Similarity=0.148  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~----~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      ++..++.+|++-..     .++|.|+++++... .+++.||+|+.+-+++++.+    ..++..+...|+|||.|++-.+
T Consensus        74 s~~Al~~Ar~Rl~~-----~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen   74 SPRALARARERLAG-----LPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             -HHHHHHHHHHTTT------SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHhcCC-----CCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            56678888888532     26899999998664 57899999999999999964    5688999999999999999876


Q ss_pred             C
Q 024162           92 L   92 (271)
Q Consensus        92 ~   92 (271)
                      .
T Consensus       148 r  148 (201)
T PF05401_consen  148 R  148 (201)
T ss_dssp             -
T ss_pred             c
Confidence            4

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.77  E-value=0.00011  Score=63.87  Aligned_cols=73  Identities=16%  Similarity=0.272  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCC-CeEEEeccCCCCCCC-CCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVE-SFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~-~v~~~~~d~e~lp~~-~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      +..|++.++++...    ... ++.+..+++.+++.. .++||+|++...++++.+ ..+++++.++|+|||.+++..+.
T Consensus        76 s~~~~~~a~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~  151 (224)
T TIGR01983        76 SEENIEVAKLHAKK----DPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN  151 (224)
T ss_pred             CHHHHHHHHHHHHH----cCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence            56777777775321    112 578888888877655 379999999988888877 88999999999999999998764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=97.75  E-value=5.1e-05  Score=66.80  Aligned_cols=70  Identities=19%  Similarity=0.243  Sum_probs=62.3

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .|.+|++.|+++.        ++.+|..+|+.... ++..+|+|+++.++||+++ ..+|..+...|.|||.|.++.+..
T Consensus        62 sS~~Mla~Aa~rl--------p~~~f~~aDl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN  132 (257)
T COG4106          62 SSPAMLAKAAQRL--------PDATFEEADLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN  132 (257)
T ss_pred             CCHHHHHHHHHhC--------CCCceecccHhhcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence            4889999998886        67889999998773 4678999999999999998 999999999999999999998763

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=97.71  E-value=3.3e-05  Score=69.66  Aligned_cols=75  Identities=13%  Similarity=0.205  Sum_probs=58.4

Q ss_pred             cHHHHHHHHHHhCchhhhcCCC----CeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDP----QIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~----~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~   89 (271)
                      .++.|++.|+++..... ..+.    ++.|...+++.+-   ..||+|+++.+++|+.+ ++++..+.+.|||||+|+++
T Consensus       119 ~s~~~V~vA~~h~~~dP-~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfit  194 (282)
T KOG1270|consen  119 ASDDMVEVANEHKKMDP-VLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFIT  194 (282)
T ss_pred             ccHHHHHHHHHhhhcCc-hhccccceeeehhhcchhhcc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEee
Confidence            48899999999842211 1222    3566667777653   34999999999999977 99999999999999999999


Q ss_pred             ecCC
Q 024162           90 KKLT   93 (271)
Q Consensus        90 ~~~~   93 (271)
                      +...
T Consensus       195 tinr  198 (282)
T KOG1270|consen  195 TINR  198 (282)
T ss_pred             ehhh
Confidence            8764

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=97.67  E-value=0.00015  Score=63.36  Aligned_cols=68  Identities=19%  Similarity=0.136  Sum_probs=54.8

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .++.|++.++++.        ..+.+.++++.+ |+++++||+|++..+++|+++   ..++++++|++  ++.+++.++
T Consensus        75 iS~~~l~~A~~~~--------~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~  143 (204)
T TIGR03587        75 INEYAVEKAKAYL--------PNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEY  143 (204)
T ss_pred             CCHHHHHHHHhhC--------CCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence            4788899888764        235677888888 899999999999999988864   78999999998  578888776


Q ss_pred             CC
Q 024162           92 LT   93 (271)
Q Consensus        92 ~~   93 (271)
                      ..
T Consensus       144 ~~  145 (204)
T TIGR03587       144 YN  145 (204)
T ss_pred             eC
Confidence            43

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.66  E-value=0.00049  Score=58.26  Aligned_cols=91  Identities=18%  Similarity=0.176  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh----------------------HHHH
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG----------------------DQLL   73 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~----------------------~~~L   73 (271)
                      ++.|++.++++..    ..+..+.++.+++...+  ..+||+|+++..+++..+                      ..++
T Consensus        50 s~~~~~~a~~~~~----~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  123 (179)
T TIGR00537        50 NPFAVKELRENAK----LNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFL  123 (179)
T ss_pred             CHHHHHHHHHHHH----HcCCceEEEEccccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHH
Confidence            5778888877642    12245788888876644  458999999876654431                      4579


Q ss_pred             HHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchh
Q 024162           74 EEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  119 (271)
Q Consensus        74 ~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~  119 (271)
                      .+++|+|||||++++.......   .    ..+...+...||....
T Consensus       124 ~~~~~~Lk~gG~~~~~~~~~~~---~----~~~~~~l~~~gf~~~~  162 (179)
T TIGR00537       124 DELPEILKEGGRVQLIQSSLNG---E----PDTFDKLDERGFRYEI  162 (179)
T ss_pred             HhHHHhhCCCCEEEEEEeccCC---h----HHHHHHHHhCCCeEEE
Confidence            9999999999999998765321   1    2445667788987543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK06202 hypothetical protein; Provisional

Probab=97.65  E-value=0.00016  Score=63.83  Aligned_cols=71  Identities=18%  Similarity=0.185  Sum_probs=55.8

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .++.|++.++++...      .++.+.+.+.+.+++++++||+|+++.++||+++   ..++++++|+++  |.+++.+.
T Consensus        96 ~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl  167 (232)
T PRK06202         96 PDPRAVAFARANPRR------PGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDL  167 (232)
T ss_pred             CCHHHHHHHHhcccc------CCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecc
Confidence            377899998877421      2356666777788888889999999999999986   469999999998  67777766


Q ss_pred             CC
Q 024162           92 LT   93 (271)
Q Consensus        92 ~~   93 (271)
                      ..
T Consensus       168 ~~  169 (232)
T PRK06202        168 IR  169 (232)
T ss_pred             cc
Confidence            53

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.64  E-value=6.2e-05  Score=67.13  Aligned_cols=76  Identities=18%  Similarity=0.251  Sum_probs=55.6

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCc-EEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGG-TILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG-~l~i~~~~   92 (271)
                      .+++|++.++++..  +...+....+...++..|--.++|+|+|++...+||+..+.++++++|+||+.| .+.+....
T Consensus        63 ~s~~mL~~a~k~~~--~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen   63 VSEAMLKVAKKHPP--VTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             CCHHHHHHhhcCCC--cccccCCccccccccccccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence            47899999988753  222334444433444444444999999999999999999999999999998777 66666544

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.55  E-value=0.00038  Score=61.20  Aligned_cols=73  Identities=15%  Similarity=0.228  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.+++.++++...    ....+.+...++..++ ...+.||+|++...++++++ ..+|+.+.++|+|||++++..+.
T Consensus        79 s~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~  153 (233)
T PRK05134         79 SEENIEVARLHALE----SGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN  153 (233)
T ss_pred             CHHHHHHHHHHHHH----cCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence            56677777765311    1235677778877765 34579999999888888877 88999999999999999998764

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.53  E-value=0.00024  Score=67.85  Aligned_cols=69  Identities=14%  Similarity=0.164  Sum_probs=55.4

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .++.|++.++++..      +..+.+...+...+   +++||+|+++..++|+..   ..++++++|+|||||++++++.
T Consensus       198 lS~~~l~~A~~~~~------~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i  268 (383)
T PRK11705        198 ISAEQQKLAQERCA------GLPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI  268 (383)
T ss_pred             CCHHHHHHHHHHhc------cCeEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            37789999988752      13477777777665   468999999988888854   7899999999999999999875


Q ss_pred             C
Q 024162           92 L   92 (271)
Q Consensus        92 ~   92 (271)
                      .
T Consensus       269 ~  269 (383)
T PRK11705        269 G  269 (383)
T ss_pred             c
Confidence            4

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.51  E-value=0.00031  Score=61.51  Aligned_cols=58  Identities=16%  Similarity=0.134  Sum_probs=46.7

Q ss_pred             CCeEEEeccCCCCC--------CCCCceeEEEeccccccCCh------------HHHHHHHHHhccCCcEEEEEecCC
Q 024162           36 PQIITQASSLSQLP--------VESFSIDTVLSISSSHELPG------------DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        36 ~~v~~~~~d~e~lp--------~~~~sfD~V~s~~~l~~~~~------------~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      ..+.++++|+.+.+        +.+.+||+|++..+.++...            ..+|++++|+|||||.|++..+..
T Consensus        91 ~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~  168 (209)
T PRK11188         91 VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG  168 (209)
T ss_pred             CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence            35788999998864        67889999999776655432            358999999999999999988764

>PRK14967 putative methyltransferase; Provisional

Probab=97.45  E-value=0.0028  Score=55.71  Aligned_cols=72  Identities=19%  Similarity=0.236  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC----------------------hHHHH
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP----------------------GDQLL   73 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~----------------------~~~~L   73 (271)
                      ++.|++.+++....    .+.++.++.+++.. .+++++||+|+++..++...                      -..++
T Consensus        68 s~~~l~~a~~n~~~----~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  142 (223)
T PRK14967         68 SRRAVRSARLNALL----AGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLC  142 (223)
T ss_pred             CHHHHHHHHHHHHH----hCCeeEEEECchhh-hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHH
Confidence            45677777765321    12357778888765 35678999999974322110                      14578


Q ss_pred             HHHHHhccCCcEEEEEecC
Q 024162           74 EEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        74 ~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++++++|||||+|++....
T Consensus       143 ~~a~~~Lk~gG~l~~~~~~  161 (223)
T PRK14967        143 DAAPALLAPGGSLLLVQSE  161 (223)
T ss_pred             HHHHHhcCCCcEEEEEEec
Confidence            8899999999999986543

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.43  E-value=0.00073  Score=62.44  Aligned_cols=85  Identities=21%  Similarity=0.352  Sum_probs=63.8

Q ss_pred             eEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCc--------c---cHHH----
Q 024162           38 IITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDK--------G---DVDK----  101 (271)
Q Consensus        38 v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~~~--------~---e~~~----  101 (271)
                      +.++-..++.+|. .+.||+|++.-+++|..+ -..|.++...|+|||.|++.+..-...        +   ..+.    
T Consensus       167 ~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~Fi  245 (315)
T PF08003_consen  167 VFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFI  245 (315)
T ss_pred             EEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEe
Confidence            4444356889988 789999999999988876 899999999999999999887532100        0   0111    


Q ss_pred             -HHHHHHHHHHHcCCcchhhhhh
Q 024162          102 -AISALEGKLLLAGFLDAQRIQL  123 (271)
Q Consensus       102 -~~~~l~~~l~laGF~~v~~~~~  123 (271)
                       +...+...|..+||.+++.+..
T Consensus       246 Ps~~~L~~wl~r~gF~~v~~v~~  268 (315)
T PF08003_consen  246 PSVAALKNWLERAGFKDVRCVDV  268 (315)
T ss_pred             CCHHHHHHHHHHcCCceEEEecC
Confidence             1357888999999999877653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.41  E-value=0.0004  Score=63.45  Aligned_cols=73  Identities=22%  Similarity=0.328  Sum_probs=52.4

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC--h-HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP--G-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~--~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .|++..+.++++....  .....+.+...|..+++.   .||.|+|+-++.|+.  + +.+++++.|+|||||+++++..
T Consensus        93 lS~~Q~~~a~~~~~~~--gl~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i  167 (273)
T PF02353_consen   93 LSEEQAEYARERIREA--GLEDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI  167 (273)
T ss_dssp             S-HHHHHHHHHHHHCS--TSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHhc--CCCCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence            4777778887774221  122457788888877654   999999999998885  3 8999999999999999999876


Q ss_pred             C
Q 024162           92 L   92 (271)
Q Consensus        92 ~   92 (271)
                      .
T Consensus       168 ~  168 (273)
T PF02353_consen  168 T  168 (273)
T ss_dssp             E
T ss_pred             c
Confidence            5

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.40  E-value=0.00025  Score=62.54  Aligned_cols=106  Identities=16%  Similarity=0.165  Sum_probs=67.8

Q ss_pred             cccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEE
Q 024162           13 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        13 ~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~   89 (271)
                      ..|++.+++.|++....   .......+.+..+.+.-.+...||+|++-+.+.|+.+   -.+|+.....|+|+|.+++.
T Consensus        84 VEp~~~Fl~~a~~~l~~---~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK  160 (218)
T PF05891_consen   84 VEPVEKFLEQAKEYLGK---DNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK  160 (218)
T ss_dssp             EES-HHHHHHHHHHTCC---GGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eccCHHHHHHHHHHhcc---cCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence            35789999999976321   1112345556667776555679999999988888887   67899999999999999999


Q ss_pred             ecCCCCc--------ccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           90 KKLTSDK--------GDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        90 ~~~~~~~--------~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                      +......        ..+.+..+.+.+.+..||+.-+...
T Consensus       161 EN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~  200 (218)
T PF05891_consen  161 ENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE  200 (218)
T ss_dssp             EEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred             ecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence            8653211        1122233467777899999876543

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.39  E-value=0.00053  Score=53.45  Aligned_cols=70  Identities=24%  Similarity=0.255  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ++.+++.+++.....   ...++.++.+++.. ++....+||+|++....+..  ..++++++|.|||||+|++.-
T Consensus        52 s~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~--~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        52 NPEALRLIERNARRF---GVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGGLL--QEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             CHHHHHHHHHHHHHh---CCCceEEEeccccccChhhcCCCCEEEECCcchhH--HHHHHHHHHHcCCCCEEEEEe
Confidence            567777777653211   11357777787764 33445689999986543322  689999999999999999864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.39  E-value=0.00067  Score=63.28  Aligned_cols=92  Identities=21%  Similarity=0.140  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccc-------c-CCh--HHHHHHHHHhccCCcE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH-------E-LPG--DQLLEEISRVLKPGGT   85 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~-------~-~~~--~~~L~ei~RvLKPGG~   85 (271)
                      +..|++.++......   ....+.+.++|+.++|+.+++||+|++...+.       + ...  ..++++++|+|||||+
T Consensus       213 ~~~~~~~a~~nl~~~---g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~  289 (329)
T TIGR01177       213 DWKMVAGARINLEHY---GIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGW  289 (329)
T ss_pred             CHHHHHHHHHHHHHh---CCCCCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcE
Confidence            466777777653211   11236788899999999889999999963221       1 112  7899999999999999


Q ss_pred             EEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           86 ILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        86 l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                      +++..+...          .+...+..+|| .+...
T Consensus       290 lv~~~~~~~----------~~~~~~~~~g~-i~~~~  314 (329)
T TIGR01177       290 IVYAVPTRI----------DLESLAEDAFR-VVKRF  314 (329)
T ss_pred             EEEEEcCCC----------CHHHHHhhcCc-chhee
Confidence            998876521          23345788999 54443

This family is found exclusively in the Archaea.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.36  E-value=0.00084  Score=59.43  Aligned_cols=89  Identities=19%  Similarity=0.190  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccC-CCCCCCCCceeEEEeccccccCCh------------HHHHHHHHHhccC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSL-SQLPVESFSIDTVLSISSSHELPG------------DQLLEEISRVLKP   82 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~-e~lp~~~~sfD~V~s~~~l~~~~~------------~~~L~ei~RvLKP   82 (271)
                      |..|++++.++.   ..     -.++.+|+ +-+||.+++||.|+++.+++|+-+            ..++..++.+|++
T Consensus        81 SpsML~~a~~~e---~e-----gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r  152 (270)
T KOG1541|consen   81 SPSMLEQAVERE---LE-----GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKR  152 (270)
T ss_pred             CHHHHHHHHHhh---hh-----cCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhcc
Confidence            788999988753   11     12344555 689999999999999888777532            2468889999999


Q ss_pred             CcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcc
Q 024162           83 GGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  117 (271)
Q Consensus        83 GG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~  117 (271)
                      |++.+++-...     .....+.+....+.+||--
T Consensus       153 g~raV~QfYpe-----n~~q~d~i~~~a~~aGF~G  182 (270)
T KOG1541|consen  153 GARAVLQFYPE-----NEAQIDMIMQQAMKAGFGG  182 (270)
T ss_pred             CceeEEEeccc-----chHHHHHHHHHHHhhccCC
Confidence            99999987653     2223346677888999864

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.32  E-value=0.0015  Score=56.44  Aligned_cols=92  Identities=14%  Similarity=0.164  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-CCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-PVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      ++.|++.++++....  ....++.++.+++.+. +.....||+|++...   ... ..++.++.++|||||++++.....
T Consensus        74 ~~~~~~~a~~n~~~~--g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (198)
T PRK00377         74 DEKAINLTRRNAEKF--GVLNNIVLIKGEAPEILFTINEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDAILL  148 (198)
T ss_pred             CHHHHHHHHHHHHHh--CCCCCeEEEEechhhhHhhcCCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEeecH
Confidence            566777777653211  1124577888888653 333468999998542   223 788999999999999998754321


Q ss_pred             CCcccHHHHHHHHHHHHHHcCCcchhh
Q 024162           94 SDKGDVDKAISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        94 ~~~~e~~~~~~~l~~~l~laGF~~v~~  120 (271)
                             ...+.+...+...|| +.+.
T Consensus       149 -------~~~~~~~~~l~~~g~-~~~~  167 (198)
T PRK00377        149 -------ETVNNALSALENIGF-NLEI  167 (198)
T ss_pred             -------HHHHHHHHHHHHcCC-CeEE
Confidence                   112355566778899 4443

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.32  E-value=0.0019  Score=57.00  Aligned_cols=94  Identities=20%  Similarity=0.231  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccccc------CCh--------------------
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE------LPG--------------------   69 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~------~~~--------------------   69 (271)
                      ++.|++.+++....   ....++.++.+++.. ++++++||+|+++..++.      +..                    
T Consensus       120 ~~~~~~~a~~~~~~---~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  195 (251)
T TIGR03534       120 SPEALAVARKNAAR---LGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDF  195 (251)
T ss_pred             CHHHHHHHHHHHHH---cCCCeEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHH
Confidence            56777777765321   111358888998865 566789999998543221      110                    


Q ss_pred             -HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           70 -DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        70 -~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                       ..++.++.++|+|||.+++.....     .   .+.+...+..+||..++..
T Consensus       196 ~~~~i~~~~~~L~~gG~~~~~~~~~-----~---~~~~~~~l~~~gf~~v~~~  240 (251)
T TIGR03534       196 YRRIIAQAPRLLKPGGWLLLEIGYD-----Q---GEAVRALFEAAGFADVETR  240 (251)
T ss_pred             HHHHHHHHHHhcccCCEEEEEECcc-----H---HHHHHHHHHhCCCCceEEE
Confidence             257889999999999999875321     1   1245666778999876543

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.28  E-value=0.00076  Score=64.51  Aligned_cols=74  Identities=18%  Similarity=0.162  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC--CCCCCceeEEEeccccccCCh-------HHHHHHHHHhccCCcEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLSISSSHELPG-------DQLLEEISRVLKPGGTI   86 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l--p~~~~sfD~V~s~~~l~~~~~-------~~~L~ei~RvLKPGG~l   86 (271)
                      ...|++.+.++...   ..-.++.++++|+..+  .+++++||.|+.++...|...       ..++.+++|+|||||.+
T Consensus       155 ~~~~i~~a~~ka~~---~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l  231 (390)
T PRK14121        155 HTPSIEQVLKQIEL---LNLKNLLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTL  231 (390)
T ss_pred             CHHHHHHHHHHHHH---cCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEE
Confidence            44566666555311   1224688999998765  588999999999876555422       58999999999999999


Q ss_pred             EEEecC
Q 024162           87 LIYKKL   92 (271)
Q Consensus        87 ~i~~~~   92 (271)
                      .+.+-.
T Consensus       232 ~l~TD~  237 (390)
T PRK14121        232 ELRTDS  237 (390)
T ss_pred             EEEEEC
Confidence            998744

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.27  E-value=0.00025  Score=69.15  Aligned_cols=100  Identities=23%  Similarity=0.228  Sum_probs=60.7

Q ss_pred             cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccc-ccCCh-HHHHHHHHHhcc
Q 024162            4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS-HELPG-DQLLEEISRVLK   81 (271)
Q Consensus         4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l-~~~~~-~~~L~ei~RvLK   81 (271)
                      +|+.++=.-.-.-+..++.|-+++   +     ...+-...-..|||++++||+|.+.-.+ .|... .-+|-|+-|+||
T Consensus       139 ~V~t~s~a~~d~~~~qvqfaleRG---v-----pa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLR  210 (506)
T PF03141_consen  139 NVTTMSFAPNDEHEAQVQFALERG---V-----PAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLR  210 (506)
T ss_pred             CceEEEcccccCCchhhhhhhhcC---c-----chhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhc
Confidence            455544333333445556666564   1     1111111236899999999999986544 44444 678999999999


Q ss_pred             CCcEEEEEecCCC--CcccHHHHHHHHHHHHH
Q 024162           82 PGGTILIYKKLTS--DKGDVDKAISALEGKLL  111 (271)
Q Consensus        82 PGG~l~i~~~~~~--~~~e~~~~~~~l~~~l~  111 (271)
                      |||.|+++.+...  ...+....|..+.....
T Consensus       211 pGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~  242 (506)
T PF03141_consen  211 PGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAK  242 (506)
T ss_pred             cCceEEecCCcccccchHHHHHHHHHHHHHHH
Confidence            9999999876432  22234445555544433

; GO: 0008168 methyltransferase activity

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.24  E-value=0.0024  Score=54.44  Aligned_cols=92  Identities=14%  Similarity=0.152  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD   95 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~   95 (271)
                      ++.|++.+++.....   ...++.++.+++. .++ ..+||+|++....+++  ..++.+++++|+|||+|++.....  
T Consensus        64 s~~~~~~a~~n~~~~---~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~~~~--~~~l~~~~~~Lk~gG~lv~~~~~~--  134 (187)
T PRK08287         64 NPDALRLIKENRQRF---GCGNIDIIPGEAP-IEL-PGKADAIFIGGSGGNL--TAIIDWSLAHLHPGGRLVLTFILL--  134 (187)
T ss_pred             CHHHHHHHHHHHHHh---CCCCeEEEecCch-hhc-CcCCCEEEECCCccCH--HHHHHHHHHhcCCCeEEEEEEecH--
Confidence            466777777653111   1135778888764 334 3589999986543322  678899999999999999876432  


Q ss_pred             cccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           96 KGDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        96 ~~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                       ..    ...+...+..+||..++..
T Consensus       135 -~~----~~~~~~~l~~~g~~~~~~~  155 (187)
T PRK08287        135 -EN----LHSALAHLEKCGVSELDCV  155 (187)
T ss_pred             -hh----HHHHHHHHHHCCCCcceEE
Confidence             11    2255567888999876543

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.24  E-value=0.0014  Score=57.75  Aligned_cols=57  Identities=18%  Similarity=0.195  Sum_probs=46.4

Q ss_pred             CCeEEEeccCCCCCCC-CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162           36 PQIITQASSLSQLPVE-SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~-~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ..|.+.++|+.+++.. ...||.|+-...+++++.   ...++.+.++|||||++++....
T Consensus        94 ~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840        94 GNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             CceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            5689999999887743 457999998877788875   67899999999999987776543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.21  E-value=0.00083  Score=60.07  Aligned_cols=78  Identities=15%  Similarity=0.230  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      |++.++..++...........-+.-...+-..-|+..+++|+|++++++.-++.   ..++..++++|||||.|++.+.+
T Consensus       106 sp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg  185 (264)
T KOG2361|consen  106 SPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG  185 (264)
T ss_pred             ChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence            667777777764221111111111111121244678999999999999887765   88999999999999999999987


Q ss_pred             C
Q 024162           93 T   93 (271)
Q Consensus        93 ~   93 (271)
                      .
T Consensus       186 ~  186 (264)
T KOG2361|consen  186 R  186 (264)
T ss_pred             c
Confidence            4

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.19  E-value=0.0023  Score=57.33  Aligned_cols=72  Identities=21%  Similarity=0.279  Sum_probs=49.2

Q ss_pred             ceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhhhhccccCcceeE
Q 024162           54 SIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVS  133 (271)
Q Consensus        54 sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~~~  133 (271)
                      +||+|+++...+.  -..++.++.++|||||+|+++.....       ....+...+...||..+......       .+
T Consensus       179 ~fD~Vvani~~~~--~~~l~~~~~~~LkpgG~lilsgi~~~-------~~~~v~~~l~~~Gf~~~~~~~~~-------~W  242 (250)
T PRK00517        179 KADVIVANILANP--LLELAPDLARLLKPGGRLILSGILEE-------QADEVLEAYEEAGFTLDEVLERG-------EW  242 (250)
T ss_pred             CcCEEEEcCcHHH--HHHHHHHHHHhcCCCcEEEEEECcHh-------hHHHHHHHHHHCCCEEEEEEEeC-------CE
Confidence            7999998643221  16788999999999999999876521       12356677888999876554322       35


Q ss_pred             EEEEeeCC
Q 024162          134 FGVKGKKP  141 (271)
Q Consensus       134 ~~i~a~KP  141 (271)
                      +.+..+|+
T Consensus       243 ~~~~~~~~  250 (250)
T PRK00517        243 VALVGKKK  250 (250)
T ss_pred             EEEEEEeC
Confidence            55655553

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.18  E-value=0.0012  Score=57.88  Aligned_cols=68  Identities=10%  Similarity=0.086  Sum_probs=50.6

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      .++.|++.++++...   ....++.++.+|+.....+.+.||+|++....+++     ...+++.|||||+|++..
T Consensus       109 ~~~~~~~~a~~~l~~---~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~-----~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        109 RIPELAEKAKKTLKK---LGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDI-----PKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CCHHHHHHHHHHHHH---cCCCCeEEEECCcccCCCcCCCcCEEEECCCcccc-----hHHHHHhhCCCcEEEEEE
Confidence            467888888876421   11246899999988776677899999987665444     356888999999998864

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.15  E-value=0.0012  Score=57.37  Aligned_cols=68  Identities=13%  Similarity=0.112  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ++.|++.++++....  ....++.++.+|+........+||+|++..+.++++     .+++++|+|||+|++..
T Consensus       106 ~~~~~~~a~~~l~~~--~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~-----~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        106 VKELAIYAAQNIERL--GYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIP-----SALVRQLKDGGVLVIPV  173 (205)
T ss_pred             CHHHHHHHHHHHHHc--CCCCcEEEEECCcccCCccCCCccEEEEccCcchhh-----HHHHHhcCcCcEEEEEE
Confidence            677888887753211  111257888899877655567999999987766554     57899999999998764

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.14  E-value=0.00056  Score=62.98  Aligned_cols=55  Identities=15%  Similarity=0.151  Sum_probs=46.1

Q ss_pred             CCeEEEeccCCCCCCC-CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162           36 PQIITQASSLSQLPVE-SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~-~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ..|.|.+.++...+++ .+.||+|++.+++.|+..   ..+++.+++.|+|||.|++-.
T Consensus       204 ~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        204 NYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             ccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            4578999999875554 678999999998888864   889999999999999887654

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.11  E-value=0.0012  Score=58.51  Aligned_cols=65  Identities=20%  Similarity=0.354  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCC--cEEEEEe
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPG--GTILIYK   90 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPG--G~l~i~~   90 (271)
                      .+.+++.+++         ..+|.++.+|+. -+++.  +|+|+....+|.+++   ..+|+++++.|+||  |+|+|.+
T Consensus       132 lp~v~~~~~~---------~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  132 LPEVIEQAKE---------ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             -HHHHCCHHH---------TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             cHhhhhcccc---------ccccccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            4555655555         267899999997 56666  999999999999987   77999999999999  9999998


Q ss_pred             cC
Q 024162           91 KL   92 (271)
Q Consensus        91 ~~   92 (271)
                      ..
T Consensus       200 ~~  201 (241)
T PF00891_consen  200 MV  201 (241)
T ss_dssp             EE
T ss_pred             ec
Confidence            75

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.09  E-value=0.0025  Score=46.41  Aligned_cols=54  Identities=28%  Similarity=0.485  Sum_probs=44.9

Q ss_pred             CCeEEEeccCCCCCC-CCCceeEEEecccccc-CCh-HHHHHHHHHhccCCcEEEEE
Q 024162           36 PQIITQASSLSQLPV-ESFSIDTVLSISSSHE-LPG-DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~-~~~sfD~V~s~~~l~~-~~~-~~~L~ei~RvLKPGG~l~i~   89 (271)
                      ..+.+...++.+... ....||+|++...+++ ... ..+++.+.+.|+|||.+++.
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          47 DNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             cceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            567888888887664 5678999999888877 444 88999999999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.07  E-value=0.00088  Score=58.33  Aligned_cols=56  Identities=16%  Similarity=0.200  Sum_probs=39.1

Q ss_pred             CCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           36 PQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      ..|.|.+.++.+.+...+.||+|++-+++.++..   ..++..+++.|+|||.|++-..
T Consensus       118 ~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s  176 (196)
T PF01739_consen  118 KMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS  176 (196)
T ss_dssp             TTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred             CceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence            4689999999885556789999999999999875   8899999999999999998643

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK14968 putative methyltransferase; Provisional

Probab=96.98  E-value=0.007  Score=50.79  Aligned_cols=95  Identities=20%  Similarity=0.213  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccC--------------------C--hHHHH
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL--------------------P--GDQLL   73 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~--------------------~--~~~~L   73 (271)
                      ++.|++.+++..... ...+..+.++++++.+ ++.+.+||+|+++..+...                    .  -..++
T Consensus        54 s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  131 (188)
T PRK14968         54 NPYAVECAKCNAKLN-NIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFL  131 (188)
T ss_pred             CHHHHHHHHHHHHHc-CCCCcceEEEeccccc-cccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHH
Confidence            466666666553110 0011126777787755 4555689999986443221                    0  14579


Q ss_pred             HHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchh
Q 024162           74 EEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  119 (271)
Q Consensus        74 ~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~  119 (271)
                      +++.++|||||.+++......   ..    ..+...+..+||....
T Consensus       132 ~~~~~~Lk~gG~~~~~~~~~~---~~----~~l~~~~~~~g~~~~~  170 (188)
T PRK14968        132 DEVGRYLKPGGRILLLQSSLT---GE----DEVLEYLEKLGFEAEV  170 (188)
T ss_pred             HHHHHhcCCCeEEEEEEcccC---CH----HHHHHHHHHCCCeeee
Confidence            999999999999988764421   11    2455677788997544

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=96.89  E-value=0.00083  Score=63.77  Aligned_cols=54  Identities=26%  Similarity=0.473  Sum_probs=49.9

Q ss_pred             EEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           40 TQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        40 ~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      ++.+++-+.||+++.||.+.++-+.+|.++ ..+++|++|++||||.++..++..
T Consensus       164 ~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~  218 (364)
T KOG1269|consen  164 FVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIK  218 (364)
T ss_pred             eehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence            477889999999999999999999999988 999999999999999999998753

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=96.88  E-value=0.00083  Score=61.32  Aligned_cols=55  Identities=36%  Similarity=0.526  Sum_probs=50.0

Q ss_pred             EEEeccCCCCCCCCCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEEEecCC
Q 024162           39 ITQASSLSQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        39 ~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~----~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      ....+|+.++|+.+.+||.++++.++||+..    ..+++|+.|+|||||...++.|..
T Consensus        88 ~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~  146 (293)
T KOG1331|consen   88 NVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL  146 (293)
T ss_pred             eeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence            4566899999999999999999999999865    789999999999999999999874

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=96.87  E-value=0.0022  Score=49.82  Aligned_cols=74  Identities=18%  Similarity=0.248  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEeccccccCC--------h-HHHHHHHHHhccCCc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSSHELP--------G-DQLLEEISRVLKPGG   84 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~l~~~~--------~-~~~L~ei~RvLKPGG   84 (271)
                      .+..+++++......  ....++.++++|+..+.  +++++||+|+++-.+....        . ..+++++.++|||||
T Consensus        32 ~~~~~~~a~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG  109 (117)
T PF13659_consen   32 DPEAVELARRNLPRN--GLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGG  109 (117)
T ss_dssp             SHHHHHHHHHHCHHC--TTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEE
T ss_pred             CHHHHHHHHHHHHHc--cCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCe
Confidence            345667777664221  12246899999998776  8899999999966543221        1 678999999999999


Q ss_pred             EEEEEec
Q 024162           85 TILIYKK   91 (271)
Q Consensus        85 ~l~i~~~   91 (271)
                      .+++..+
T Consensus       110 ~~~~~~~  116 (117)
T PF13659_consen  110 VLVFITP  116 (117)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEeC
Confidence            9998764

...

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.83  E-value=0.00027  Score=59.27  Aligned_cols=47  Identities=26%  Similarity=0.313  Sum_probs=40.6

Q ss_pred             CCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162           46 SQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        46 e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ...+|.++|.|+|++..++.|+.-   ..++++.+|+|||||+|.+..+.
T Consensus        39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd   88 (185)
T COG4627          39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD   88 (185)
T ss_pred             hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence            456899999999999888877652   78999999999999999998764

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=96.82  E-value=0.0037  Score=54.63  Aligned_cols=67  Identities=12%  Similarity=0.070  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ++.|++.++++...   ....++.++.+++.........||+|++.....++     ...+.+.|+|||+|++..
T Consensus       111 ~~~~~~~A~~~~~~---~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~-----~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       111 IPELAEKAERRLRK---LGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKI-----PEALIDQLKEGGILVMPV  177 (215)
T ss_pred             CHHHHHHHHHHHHH---CCCCCeEEEECCcccCCcccCCCCEEEEcCCcccc-----cHHHHHhcCcCcEEEEEE
Confidence            57788888876421   11246889999987765556789999987654444     356889999999998864

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=96.70  E-value=0.0044  Score=54.05  Aligned_cols=70  Identities=11%  Similarity=0.114  Sum_probs=53.1

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~   89 (271)
                      .++.|++.++++....  ....++.+.++++..++   ++||+|++...+++++.   ..++++++|++++++.+.+.
T Consensus        85 ~s~~~i~~a~~~~~~~--~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021        85 ISEQMVQMARNRAQGR--DVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             CCHHHHHHHHHHHHhc--CCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            3788899998874211  11136889999998876   78999999888877753   67899999999988776654

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=96.69  E-value=0.0064  Score=58.11  Aligned_cols=75  Identities=16%  Similarity=0.145  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC---h---HHHHHHHHHhccCCcEEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---G---DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~---~---~~~L~ei~RvLKPGG~l~i~   89 (271)
                      ++.|++.+++...........++.+..+++... ++..+||+|+++-.+|...   +   .+++.+++|+|+|||.|++.
T Consensus       261 S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        261 SPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             CHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence            567888888753211101113577777776432 3456899999987766542   2   67899999999999999998


Q ss_pred             ec
Q 024162           90 KK   91 (271)
Q Consensus        90 ~~   91 (271)
                      ..
T Consensus       340 ~n  341 (378)
T PRK15001        340 AN  341 (378)
T ss_pred             Ee
Confidence            63

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=96.62  E-value=0.003  Score=54.18  Aligned_cols=58  Identities=17%  Similarity=0.132  Sum_probs=44.3

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-C-CCCCCceeEEEeccccccCCh-HHHHHHHHHhccC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-L-PVESFSIDTVLSISSSHELPG-DQLLEEISRVLKP   82 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-l-p~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKP   82 (271)
                      .++.|++.++++          .+.+++++++. + ++++++||+|++..++||+++ ..+++++.|++++
T Consensus        44 ~s~~~i~~a~~~----------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        44 IDQDGVLACVAR----------GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             CCHHHHHHHHHc----------CCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence            356666666543          24567788865 5 478889999999999999987 8899999998765

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR03438 probable methyltransferase

Probab=96.61  E-value=0.007  Score=55.82  Aligned_cols=75  Identities=17%  Similarity=0.159  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CCCCCCc----eeEEEeccccccCCh---HHHHHHHHHhccCCcEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPVESFS----IDTVLSISSSHELPG---DQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp~~~~s----fD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~   87 (271)
                      |+.|++.++++....  ....+|.++++|+.+ +++....    ..++++..++++++.   ..+|++++++|+|||.|+
T Consensus        97 S~~mL~~a~~~l~~~--~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~l  174 (301)
T TIGR03438        97 SADALKESAAALAAD--YPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLL  174 (301)
T ss_pred             CHHHHHHHHHHHHhh--CCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            788888888764211  123567788999876 4554432    334444456777764   678999999999999998


Q ss_pred             EEecC
Q 024162           88 IYKKL   92 (271)
Q Consensus        88 i~~~~   92 (271)
                      +....
T Consensus       175 ig~d~  179 (301)
T TIGR03438       175 IGVDL  179 (301)
T ss_pred             EeccC
Confidence            86543

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=96.61  E-value=0.013  Score=49.35  Aligned_cols=78  Identities=17%  Similarity=0.241  Sum_probs=50.0

Q ss_pred             EEEecCCcccHHHHHHHHHHhCchhhhcCCCC-eEEEeccCCCCCCCCCceeEEEeccccccCCh------HHHHHHHHH
Q 024162            6 LALSEDKILPVSAVLNAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSSHELPG------DQLLEEISR   78 (271)
Q Consensus         6 l~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~-v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~------~~~L~ei~R   78 (271)
                      +..+|..    +.+++.+++....    .+.. +.++..|+.+ ++++..||+|+++-.++.-..      ..++.+..+
T Consensus        58 v~~vDi~----~~a~~~a~~n~~~----n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~  128 (170)
T PF05175_consen   58 VTAVDIN----PDALELAKRNAER----NGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARR  128 (170)
T ss_dssp             EEEEESB----HHHHHHHHHHHHH----TTCTTEEEEESSTTT-TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHH
T ss_pred             EEEEcCC----HHHHHHHHHHHHh----cCccccccccccccc-cccccceeEEEEccchhcccccchhhHHHHHHHHHH
Confidence            4445554    5556666554211    1122 7888888754 344789999999876655432      778999999


Q ss_pred             hccCCcEEEEEecC
Q 024162           79 VLKPGGTILIYKKL   92 (271)
Q Consensus        79 vLKPGG~l~i~~~~   92 (271)
                      .|||||.|++....
T Consensus       129 ~Lk~~G~l~lv~~~  142 (170)
T PF05175_consen  129 YLKPGGRLFLVINS  142 (170)
T ss_dssp             HEEEEEEEEEEEET
T ss_pred             hccCCCEEEEEeec
Confidence            99999999776543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=96.57  E-value=0.0091  Score=52.00  Aligned_cols=67  Identities=15%  Similarity=0.168  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~   87 (271)
                      ++.|++.++++....  ....++.+..+++   +..+++||+|++..+++|+++   ..+++++.+.+++++.+.
T Consensus        94 s~~~i~~a~~~~~~~--~~~~~i~~~~~d~---~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~  163 (230)
T PRK07580         94 SPQMVEEARERAPEA--GLAGNITFEVGDL---ESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT  163 (230)
T ss_pred             CHHHHHHHHHHHHhc--CCccCcEEEEcCc---hhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence            788889998874211  1113678888874   445688999999998877764   678888888776555444

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.49  E-value=0.029  Score=50.32  Aligned_cols=94  Identities=22%  Similarity=0.276  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccccc------C--------------------Ch
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE------L--------------------PG   69 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~------~--------------------~~   69 (271)
                      ++.+++.+++...   .....++.++.+++.. ++..++||+|+++....-      +                    ..
T Consensus       141 s~~~l~~a~~n~~---~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~  216 (275)
T PRK09328        141 SPEALAVARRNAK---HGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDF  216 (275)
T ss_pred             CHHHHHHHHHHHH---hCCCCcEEEEEccccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHH
Confidence            5667777777642   1122468888888744 334679999998532110      0                    01


Q ss_pred             -HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           70 -DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        70 -~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                       ..++.++.++|+|||++++....     ...   +.+...+...||.+++..
T Consensus       217 ~~~~~~~~~~~Lk~gG~l~~e~g~-----~~~---~~~~~~l~~~gf~~v~~~  261 (275)
T PRK09328        217 YRRIIEQAPRYLKPGGWLLLEIGY-----DQG---EAVRALLAAAGFADVETR  261 (275)
T ss_pred             HHHHHHHHHHhcccCCEEEEEECc-----hHH---HHHHHHHHhCCCceeEEe
Confidence             45778888999999999985432     111   245566777899866543

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=96.48  E-value=0.0073  Score=53.33  Aligned_cols=56  Identities=16%  Similarity=0.264  Sum_probs=45.0

Q ss_pred             CCCeEEEeccCCCCCCC-CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162           35 DPQIITQASSLSQLPVE-SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        35 ~~~v~~~~~d~e~lp~~-~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ...|.+.++|+.+++.. ...||.|+-...+++++.   ..+++.+.++|||||++++..
T Consensus        96 ~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~  155 (218)
T PRK13255         96 AGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVT  155 (218)
T ss_pred             cCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence            35688999999888543 358999998888888875   789999999999999765543

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=96.48  E-value=0.0099  Score=56.04  Aligned_cols=71  Identities=20%  Similarity=0.128  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC-----h-HHHHHHHHHhccCCcEEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-----G-DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~-----~-~~~L~ei~RvLKPGG~l~i~   89 (271)
                      ++.|++.+++....    .+....++.+++..  ...+.||+|+++..+|+..     . ..+++++.+.|||||.|++.
T Consensus       229 s~~Al~~A~~nl~~----n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV  302 (342)
T PRK09489        229 SAAALESSRATLAA----NGLEGEVFASNVFS--DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (342)
T ss_pred             CHHHHHHHHHHHHH----cCCCCEEEEccccc--ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence            56777777765321    11334556666543  2367899999998887632     2 78999999999999999988


Q ss_pred             ecC
Q 024162           90 KKL   92 (271)
Q Consensus        90 ~~~   92 (271)
                      ...
T Consensus       303 an~  305 (342)
T PRK09489        303 ANA  305 (342)
T ss_pred             EeC
Confidence            653

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=96.42  E-value=0.011  Score=51.24  Aligned_cols=68  Identities=10%  Similarity=0.031  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      ++.|++.++++...   ....++.+..+++.......+.||+|++....+++     ..++++.|+|||+|++...
T Consensus       109 ~~~~~~~a~~~~~~---~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~-----~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        109 IKTLQWEAKRRLKQ---LGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEI-----PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CHHHHHHHHHHHHH---CCCCceEEEECCcccCCCcCCCcCEEEEccCchhh-----hHHHHHhcCCCcEEEEEEc
Confidence            47778888776421   11235888888876543345789999997665544     4668899999999998765

>TIGR00438 rrmJ cell division protein FtsJ

Probab=96.38  E-value=0.018  Score=49.11  Aligned_cols=56  Identities=18%  Similarity=0.133  Sum_probs=40.2

Q ss_pred             CeEEEeccCCCCC--------CCCCceeEEEeccccc----cCC-------h-HHHHHHHHHhccCCcEEEEEecC
Q 024162           37 QIITQASSLSQLP--------VESFSIDTVLSISSSH----ELP-------G-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        37 ~v~~~~~d~e~lp--------~~~~sfD~V~s~~~l~----~~~-------~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .+.++++++.+.+        ++.++||+|++....+    |..       . ..++.+++++|+|||++++..+.
T Consensus        73 ~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~  148 (188)
T TIGR00438        73 NVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ  148 (188)
T ss_pred             CceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence            4677777876643        4577899999854321    111       1 57899999999999999997654

>PRK01581 speE spermidine synthase; Validated

Probab=96.31  E-value=0.017  Score=54.92  Aligned_cols=100  Identities=14%  Similarity=0.174  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHhCc----hhhhcCCCCeEEEeccCCC-CCCCCCceeEEEecccc------ccCChHHHHHHHHHhccCCc
Q 024162           16 VSAVLNAIRDLGD----EAVEQCDPQIITQASSLSQ-LPVESFSIDTVLSISSS------HELPGDQLLEEISRVLKPGG   84 (271)
Q Consensus        16 s~~mv~~ar~~~~----~~~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~l------~~~~~~~~L~ei~RvLKPGG   84 (271)
                      .++|+++|++...    .+....++++..+.+|+.. +.-..+.||+|++-..-      ..+...++++.+++.|+|||
T Consensus       183 DpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgG  262 (374)
T PRK01581        183 DGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDG  262 (374)
T ss_pred             CHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCc
Confidence            5789999996310    0011235788888888875 34456789999985421      11223789999999999999


Q ss_pred             EEEEEecCCCCcccHHHHHHHHHHHHHHcCCcch
Q 024162           85 TILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  118 (271)
Q Consensus        85 ~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v  118 (271)
                      .|+++...+   .........+...+..+||...
T Consensus       263 V~V~Qs~sp---~~~~~~~~~i~~tL~~af~~v~  293 (374)
T PRK01581        263 AFVCQSNSP---ADAPLVYWSIGNTIEHAGLTVK  293 (374)
T ss_pred             EEEEecCCh---hhhHHHHHHHHHHHHHhCCceE
Confidence            998875432   1122333346667777777643

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=96.26  E-value=0.016  Score=51.61  Aligned_cols=58  Identities=16%  Similarity=0.099  Sum_probs=48.7

Q ss_pred             CCCeEEEeccCCCCCCC---CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162           35 DPQIITQASSLSQLPVE---SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        35 ~~~v~~~~~d~e~lp~~---~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ...|.+.++|+.+++..   .+.||+|+-...++.+++   ....+.+.++|+|||++++....
T Consensus       102 ~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256        102 GDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             cCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence            35789999999988642   257999999888888875   78999999999999999887653

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.25  E-value=0.028  Score=51.02  Aligned_cols=80  Identities=24%  Similarity=0.257  Sum_probs=50.4

Q ss_pred             EEeccCCCC-CCCC-----CceeEEEeccccccC-Ch----HHHHHHHHHhccCCcEEEEEecCCCC--------cccHH
Q 024162           40 TQASSLSQL-PVES-----FSIDTVLSISSSHEL-PG----DQLLEEISRVLKPGGTILIYKKLTSD--------KGDVD  100 (271)
Q Consensus        40 ~~~~d~e~l-p~~~-----~sfD~V~s~~~l~~~-~~----~~~L~ei~RvLKPGG~l~i~~~~~~~--------~~e~~  100 (271)
                      .+..|+.+. |+..     ..||+|++++.+... .+    ..+++.+.+.|||||.|++......+        ...+.
T Consensus       138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~  217 (256)
T PF01234_consen  138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLP  217 (256)
T ss_dssp             EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---
T ss_pred             EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEeccccc
Confidence            345666544 3443     259999997765433 22    78999999999999999998754321        11122


Q ss_pred             HHHHHHHHHHHHcCCcchh
Q 024162          101 KAISALEGKLLLAGFLDAQ  119 (271)
Q Consensus       101 ~~~~~l~~~l~laGF~~v~  119 (271)
                      -..+.++..+..+||....
T Consensus       218 l~ee~v~~al~~aG~~i~~  236 (256)
T PF01234_consen  218 LNEEFVREALEEAGFDIED  236 (256)
T ss_dssp             B-HHHHHHHHHHTTEEEEE
T ss_pred             CCHHHHHHHHHHcCCEEEe
Confidence            2234667788999997543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=96.20  E-value=0.04  Score=53.43  Aligned_cols=74  Identities=23%  Similarity=0.257  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC----CCCCceeEEEecc------ccccCC-----------------
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP----VESFSIDTVLSIS------SSHELP-----------------   68 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp----~~~~sfD~V~s~~------~l~~~~-----------------   68 (271)
                      +..|++.+++....   ..-.+|.++.+|+..++    +..++||.|++-.      +++..+                 
T Consensus       286 ~~~rl~~~~~n~~r---~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~  362 (434)
T PRK14901        286 SASRLKKLQENAQR---LGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPL  362 (434)
T ss_pred             CHHHHHHHHHHHHH---cCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHH
Confidence            45555555554311   01135888889998876    4567999999621      122111                 


Q ss_pred             hHHHHHHHHHhccCCcEEEEEecC
Q 024162           69 GDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        69 ~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ...+|.+++++|||||+|++++..
T Consensus       363 Q~~iL~~a~~~lkpgG~lvystcs  386 (434)
T PRK14901        363 QAELLESLAPLLKPGGTLVYATCT  386 (434)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEeCC
Confidence            146799999999999999998865

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=96.19  E-value=0.038  Score=50.67  Aligned_cols=71  Identities=17%  Similarity=0.223  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.+++.....  .....+.+..++.  .++..++||+|+++...+.+  ..++.+++++|||||+|+++...
T Consensus       191 d~~al~~a~~n~~~n--~~~~~~~~~~~~~--~~~~~~~fDlVvan~~~~~l--~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       191 DPLAVESARKNAELN--QVSDRLQVKLIYL--EQPIEGKADVIVANILAEVI--KELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             CHHHHHHHHHHHHHc--CCCcceEEEeccc--ccccCCCceEEEEecCHHHH--HHHHHHHHHHcCCCcEEEEEeCc
Confidence            456677776653211  1112344444442  33446799999996543221  67899999999999999998765

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK03612 spermidine synthase; Provisional

Probab=96.16  E-value=0.02  Score=56.90  Aligned_cols=97  Identities=16%  Similarity=0.138  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHhC--chh--hhcCCCCeEEEeccCCCC-CCCCCceeEEEecccccc------CChHHHHHHHHHhccCCc
Q 024162           16 VSAVLNAIRDLG--DEA--VEQCDPQIITQASSLSQL-PVESFSIDTVLSISSSHE------LPGDQLLEEISRVLKPGG   84 (271)
Q Consensus        16 s~~mv~~ar~~~--~~~--~~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~l~~------~~~~~~L~ei~RvLKPGG   84 (271)
                      .++|++.+|+..  ...  ....+++++++.+|+.+. ...+++||+|++.....+      +...++++.+.+.|||||
T Consensus       330 d~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG  409 (521)
T PRK03612        330 DPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDG  409 (521)
T ss_pred             CHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCe
Confidence            578999999831  110  012346788888988753 334578999999654332      223679999999999999


Q ss_pred             EEEEEecCCCCcccHHHHHHHHHHHHHHcCC
Q 024162           85 TILIYKKLTSDKGDVDKAISALEGKLLLAGF  115 (271)
Q Consensus        85 ~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF  115 (271)
                      .++++...+..  . .+....+.+.+...||
T Consensus       410 ~lv~~~~~~~~--~-~~~~~~i~~~l~~~gf  437 (521)
T PRK03612        410 LLVVQSTSPYF--A-PKAFWSIEATLEAAGL  437 (521)
T ss_pred             EEEEecCCccc--c-hHHHHHHHHHHHHcCC
Confidence            99987643211  1 2233456677888899

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=96.16  E-value=0.013  Score=53.75  Aligned_cols=74  Identities=14%  Similarity=0.211  Sum_probs=55.5

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      -|+++.+.++++....  ....+|+....|...+.   +.||.|+|+-+++|+..   +.+++.++++|+|||++++...
T Consensus       103 lS~~Q~~~~~~r~~~~--gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I  177 (283)
T COG2230         103 LSEEQLAYAEKRIAAR--GLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI  177 (283)
T ss_pred             CCHHHHHHHHHHHHHc--CCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence            4788888888864211  11235666666666653   34999999999998864   8999999999999999999876


Q ss_pred             CC
Q 024162           92 LT   93 (271)
Q Consensus        92 ~~   93 (271)
                      ..
T Consensus       178 ~~  179 (283)
T COG2230         178 TG  179 (283)
T ss_pred             cC
Confidence            53

>PRK00811 spermidine synthase; Provisional

Probab=96.12  E-value=0.014  Score=53.44  Aligned_cols=76  Identities=18%  Similarity=0.182  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhCchhh--hcCCCCeEEEeccCCCC-CCCCCceeEEEeccccccCC-----hHHHHHHHHHhccCCcEEE
Q 024162           16 VSAVLNAIRDLGDEAV--EQCDPQIITQASSLSQL-PVESFSIDTVLSISSSHELP-----GDQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~--~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~l~~~~-----~~~~L~ei~RvLKPGG~l~   87 (271)
                      .+.|++++++......  ...++++.++.+|+... ....++||+|++-....+.+     ..++++.+.+.|+|||.++
T Consensus       109 d~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv  188 (283)
T PRK00811        109 DERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFV  188 (283)
T ss_pred             CHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence            6788888988642110  11356788888987643 33567899999854333222     3788999999999999999


Q ss_pred             EEec
Q 024162           88 IYKK   91 (271)
Q Consensus        88 i~~~   91 (271)
                      ++..
T Consensus       189 ~~~~  192 (283)
T PRK00811        189 AQSG  192 (283)
T ss_pred             EeCC
Confidence            8643

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.11  E-value=0.038  Score=47.37  Aligned_cols=71  Identities=23%  Similarity=0.218  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.++++.+..   ...++.++.+++.. ++.-...+|.|+....   ..-..++++++++|+|||+|++....
T Consensus        73 s~~~~~~a~~n~~~~---~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~~---~~~~~~l~~~~~~LkpgG~li~~~~~  144 (196)
T PRK07402         73 DEEVVNLIRRNCDRF---GVKNVEVIEGSAPECLAQLAPAPDRVCIEGG---RPIKEILQAVWQYLKPGGRLVATASS  144 (196)
T ss_pred             CHHHHHHHHHHHHHh---CCCCeEEEECchHHHHhhCCCCCCEEEEECC---cCHHHHHHHHHHhcCCCeEEEEEeec
Confidence            567777777654211   11357888888754 3322234676654321   11278999999999999999999865

>PHA03411 putative methyltransferase; Provisional

Probab=96.07  E-value=0.022  Score=52.19  Aligned_cols=92  Identities=12%  Similarity=0.061  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---------------------HHHHH
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---------------------DQLLE   74 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---------------------~~~L~   74 (271)
                      ++.|++.++++.        .++.++++|+..+.. ..+||+|+++-.+++...                     ..++.
T Consensus        97 sp~al~~Ar~n~--------~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~  167 (279)
T PHA03411         97 NPEFARIGKRLL--------PEAEWITSDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFA  167 (279)
T ss_pred             CHHHHHHHHHhC--------cCCEEEECchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHh
Confidence            457888887653        357888999987653 468999999766555321                     24567


Q ss_pred             HHHHhccCCcEEEEEecCCCC-cccHHHHHHHHHHHHHHcCCcch
Q 024162           75 EISRVLKPGGTILIYKKLTSD-KGDVDKAISALEGKLLLAGFLDA  118 (271)
Q Consensus        75 ei~RvLKPGG~l~i~~~~~~~-~~e~~~~~~~l~~~l~laGF~~v  118 (271)
                      .+.++|+|+|.+++.-.+... +..+  ..++.+..|..+||+-.
T Consensus       168 ~v~~~L~p~G~~~~~yss~~~y~~sl--~~~~y~~~l~~~g~~~~  210 (279)
T PHA03411        168 DVGYFIVPTGSAGFAYSGRPYYDGTM--KSNKYLKWSKQTGLVTY  210 (279)
T ss_pred             hhHheecCCceEEEEEeccccccccC--CHHHHHHHHHhcCcEec
Confidence            778999999988776433211 1111  12366778999999753

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=96.06  E-value=0.054  Score=49.64  Aligned_cols=90  Identities=17%  Similarity=0.128  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccc-------------ccCC------------h-
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS-------------HELP------------G-   69 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l-------------~~~~------------~-   69 (271)
                      ++.+++.+++.....  ....++.++++|+.+ +++..+||+|+++-..             ++-+            . 
T Consensus       154 s~~al~~A~~n~~~~--~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~  230 (284)
T TIGR03533       154 SPDALAVAEINIERH--GLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLV  230 (284)
T ss_pred             CHHHHHHHHHHHHHc--CCCCcEEEEECchhh-ccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHH
Confidence            577788887764211  112358899998743 2456689999986211             1100            1 


Q ss_pred             HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcc
Q 024162           70 DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  117 (271)
Q Consensus        70 ~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~  117 (271)
                      ..+++++.+.|+|||++++.....     .    ..+...+..+||.-
T Consensus       231 ~~il~~a~~~L~~gG~l~~e~g~~-----~----~~v~~~~~~~~~~~  269 (284)
T TIGR03533       231 RRILAEAADHLNENGVLVVEVGNS-----M----EALEEAYPDVPFTW  269 (284)
T ss_pred             HHHHHHHHHhcCCCCEEEEEECcC-----H----HHHHHHHHhCCCce
Confidence            456888999999999999876431     1    14455566677754

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=96.04  E-value=0.054  Score=48.89  Aligned_cols=92  Identities=22%  Similarity=0.325  Sum_probs=63.1

Q ss_pred             HHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCC
Q 024162           17 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSD   95 (271)
Q Consensus        17 ~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~~   95 (271)
                      +.+.+.|++.....  ....+|.+..+|+.+.-+++ .||+|+.=.     ++ ..++..++.+|||||.+.+..+..  
T Consensus       129 ~d~~k~A~~Nl~~~--~l~d~v~~~~~Dv~~~~~~~-~vDav~LDm-----p~PW~~le~~~~~Lkpgg~~~~y~P~v--  198 (256)
T COG2519         129 EDFAKTARENLSEF--GLGDRVTLKLGDVREGIDEE-DVDAVFLDL-----PDPWNVLEHVSDALKPGGVVVVYSPTV--  198 (256)
T ss_pred             HHHHHHHHHHHHHh--ccccceEEEecccccccccc-ccCEEEEcC-----CChHHHHHHHHHHhCCCcEEEEEcCCH--
Confidence            34455555542111  12233788889998876666 999998742     34 889999999999999999998762  


Q ss_pred             cccHHHHHHHHHHHHHHcCCcchhhhhh
Q 024162           96 KGDVDKAISALEGKLLLAGFLDAQRIQL  123 (271)
Q Consensus        96 ~~e~~~~~~~l~~~l~laGF~~v~~~~~  123 (271)
                       ....    .....|...||++++.++.
T Consensus       199 -eQv~----kt~~~l~~~g~~~ie~~E~  221 (256)
T COG2519         199 -EQVE----KTVEALRERGFVDIEAVET  221 (256)
T ss_pred             -HHHH----HHHHHHHhcCccchhhhee
Confidence             1122    3344566679999988764

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=95.97  E-value=0.065  Score=51.83  Aligned_cols=76  Identities=18%  Similarity=0.135  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCC--CCCceeEEEec---c---ccccCC-----------------hH
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV--ESFSIDTVLSI---S---SSHELP-----------------GD   70 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~--~~~sfD~V~s~---~---~l~~~~-----------------~~   70 (271)
                      ++.+++.++++.+..  .....+.+..++....++  +.++||+|++-   +   .++..+                 ..
T Consensus       271 ~~~~l~~~~~n~~r~--g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~  348 (426)
T TIGR00563       271 HEHRLKRVYENLKRL--GLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQS  348 (426)
T ss_pred             CHHHHHHHHHHHHHc--CCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHH
Confidence            455666665553211  011234446666665554  56789999962   1   122211                 14


Q ss_pred             HHHHHHHHhccCCcEEEEEecCC
Q 024162           71 QLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        71 ~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .+|.+++++|||||+|++++.+-
T Consensus       349 ~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       349 EILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             HHHHHHHHhcCCCcEEEEEeCCC
Confidence            68999999999999999998764

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=95.97  E-value=0.013  Score=53.40  Aligned_cols=55  Identities=15%  Similarity=0.177  Sum_probs=46.1

Q ss_pred             CCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162           36 PQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ..|.|.+.++..-++..+.||+|+|-+++.++..   ..++..++..|+|||.|++=.
T Consensus       184 ~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         184 KMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             cccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence            3578888888765545678999999999988874   889999999999999999754

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=95.97  E-value=0.048  Score=49.18  Aligned_cols=115  Identities=10%  Similarity=0.129  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEeccc----------------ccc-CC-h-HHHHH
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISS----------------SHE-LP-G-DQLLE   74 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~----------------l~~-~~-~-~~~L~   74 (271)
                      .++|.++|++..+.  ..+..+|.++++|+.++.  +..++||+|+++-.                .+| .. + +++++
T Consensus        77 q~~~a~~A~~nv~l--n~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~  154 (248)
T COG4123          77 QEEAAEMAQRNVAL--NPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIR  154 (248)
T ss_pred             CHHHHHHHHHHHHh--CcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHH
Confidence            56778888875321  234567999999998774  45568999999632                112 11 2 78899


Q ss_pred             HHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhhhhccccCcceeEEEEEeeC
Q 024162           75 EISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKK  140 (271)
Q Consensus        75 ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~~~~~i~a~K  140 (271)
                      -..++|||||+|.+.-...    .+    .++...+.-.+|.........|-....-..+.+.+.|
T Consensus       155 ~a~~~lk~~G~l~~V~r~e----rl----~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k  212 (248)
T COG4123         155 AAAKLLKPGGRLAFVHRPE----RL----AEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIK  212 (248)
T ss_pred             HHHHHccCCCEEEEEecHH----HH----HHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEec
Confidence            9999999999999886431    12    2444556666666544333222112222455666666

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=95.95  E-value=0.014  Score=51.48  Aligned_cols=82  Identities=17%  Similarity=0.210  Sum_probs=58.3

Q ss_pred             EeccCCCCCC---CCCceeEEEeccccccCCh----HHHHHHHHHhccCCcE-----EEEEecCCCCcccHHHHHHHHHH
Q 024162           41 QASSLSQLPV---ESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGT-----ILIYKKLTSDKGDVDKAISALEG  108 (271)
Q Consensus        41 ~~~d~e~lp~---~~~sfD~V~s~~~l~~~~~----~~~L~ei~RvLKPGG~-----l~i~~~~~~~~~e~~~~~~~l~~  108 (271)
                      .+.|.-+.|+   +++.||+|.++.++.++++    .+.+..+++.|+|+|.     |++..+.+-....---....+..
T Consensus        88 ~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~  167 (219)
T PF11968_consen   88 LQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLRE  167 (219)
T ss_pred             eeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHH
Confidence            4456666666   4779999999999999986    6789999999999999     99887754110000001124556


Q ss_pred             HHHHcCCcchhhhh
Q 024162          109 KLLLAGFLDAQRIQ  122 (271)
Q Consensus       109 ~l~laGF~~v~~~~  122 (271)
                      .+..-||..+....
T Consensus       168 im~~LGf~~~~~~~  181 (219)
T PF11968_consen  168 IMESLGFTRVKYKK  181 (219)
T ss_pred             HHHhCCcEEEEEEe
Confidence            68889999876643

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=95.95  E-value=0.031  Score=52.52  Aligned_cols=91  Identities=15%  Similarity=0.049  Sum_probs=57.0

Q ss_pred             CccEEEEecCCcccHHHHHHHHHHhCchhh---hcCCCCeEEEeccCCCCC----CCC--CceeEEEeccccccCC-h--
Q 024162            2 QSAVLALSEDKILPVSAVLNAIRDLGDEAV---EQCDPQIITQASSLSQLP----VES--FSIDTVLSISSSHELP-G--   69 (271)
Q Consensus         2 ~~~vl~~td~~~~~s~~mv~~ar~~~~~~~---~~~~~~v~~~~~d~e~lp----~~~--~sfD~V~s~~~l~~~~-~--   69 (271)
                      ....++-+|.+...+.+..+..++......   ....-...|+.+|.....    +.+  ..||+|-+-+++|+.- +  
T Consensus        84 ~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~  163 (331)
T PF03291_consen   84 KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEE  163 (331)
T ss_dssp             T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHH
Confidence            346678888877776665555533211100   011234566777664321    333  5999999999998863 2  


Q ss_pred             --HHHHHHHHHhccCCcEEEEEecC
Q 024162           70 --DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        70 --~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                        ..+|..+.+.|||||+|+.+.+.
T Consensus       164 ~ar~~l~Nvs~~Lk~GG~FIgT~~d  188 (331)
T PF03291_consen  164 KARQFLKNVSSLLKPGGYFIGTTPD  188 (331)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEecC
Confidence              67999999999999999999876

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=95.94  E-value=0.016  Score=52.51  Aligned_cols=65  Identities=17%  Similarity=0.305  Sum_probs=47.5

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .|..|.+..++++-        .+.    +..+..-.+..||+|.+.+.+-.... ..+|++|++.|+|+|++++.-.
T Consensus       124 ~S~~Mr~rL~~kg~--------~vl----~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvV  189 (265)
T PF05219_consen  124 ASPPMRWRLSKKGF--------TVL----DIDDWQQTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVV  189 (265)
T ss_pred             CCHHHHHHHHhCCC--------eEE----ehhhhhccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence            36788888888761        121    12223233568999999998876654 8999999999999999998743

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=95.89  E-value=0.045  Score=51.10  Aligned_cols=68  Identities=21%  Similarity=0.223  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhCchhhh--cCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEE
Q 024162           16 VSAVLNAIRDLGDEAVE--QCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~--~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~   87 (271)
                      ++.|++.++++......  .....+.|.+++++.+   +++||+|++..+++|+++   ..+++.+.+ +.+||.++
T Consensus       175 S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI  247 (315)
T PLN02585        175 SAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII  247 (315)
T ss_pred             CHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence            78899999887532100  0124578888887654   578999999988888765   345565554 45555544

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=95.88  E-value=0.0049  Score=48.71  Aligned_cols=38  Identities=21%  Similarity=0.518  Sum_probs=29.4

Q ss_pred             ceeEEEeccccccCC----h---HHHHHHHHHhccCCcEEEEEec
Q 024162           54 SIDTVLSISSSHELP----G---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        54 sfD~V~s~~~l~~~~----~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .||+|++.++.-|++    |   ..+++.+++.|+|||.|++...
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ   45 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ   45 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence            499999988877765    2   5689999999999999998753

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=95.85  E-value=0.099  Score=50.60  Aligned_cols=73  Identities=18%  Similarity=0.196  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEeccc------------cccCCh-----------H
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISS------------SHELPG-----------D   70 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~------------l~~~~~-----------~   70 (271)
                      ++.|++.++++...    .+..+.++++|+..++  +..++||.|++...            ..|...           .
T Consensus       277 s~~~l~~~~~n~~~----~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~  352 (427)
T PRK10901        277 DAQRLERVRENLQR----LGLKATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQS  352 (427)
T ss_pred             CHHHHHHHHHHHHH----cCCCeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHH
Confidence            45666666665321    1234678889988764  34678999995221            112111           3


Q ss_pred             HHHHHHHHhccCCcEEEEEecC
Q 024162           71 QLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        71 ~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .+|.+++++|||||+|++++..
T Consensus       353 ~iL~~a~~~LkpGG~lvystcs  374 (427)
T PRK10901        353 EILDALWPLLKPGGTLLYATCS  374 (427)
T ss_pred             HHHHHHHHhcCCCCEEEEEeCC
Confidence            6899999999999999999865

>PRK04457 spermidine synthase; Provisional

Probab=95.85  E-value=0.037  Score=50.15  Aligned_cols=75  Identities=12%  Similarity=0.154  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-CCCCCceeEEEecc-cccc----CChHHHHHHHHHhccCCcEEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-PVESFSIDTVLSIS-SSHE----LPGDQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~-~l~~----~~~~~~L~ei~RvLKPGG~l~i~   89 (271)
                      .+.|++.+++...  ......++.++.+|+... .-..++||+|+.-. ....    +...++++++.++|+|||+|++.
T Consensus        99 dp~vi~~A~~~f~--~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457         99 NPQVIAVARNHFE--LPENGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             CHHHHHHHHHHcC--CCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            5788999998742  112236788888987532 32346899999732 1111    22379999999999999999997


Q ss_pred             ecC
Q 024162           90 KKL   92 (271)
Q Consensus        90 ~~~   92 (271)
                      .+.
T Consensus       177 ~~~  179 (262)
T PRK04457        177 LWS  179 (262)
T ss_pred             cCC
Confidence            665

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=95.82  E-value=0.017  Score=50.58  Aligned_cols=41  Identities=32%  Similarity=0.590  Sum_probs=36.8

Q ss_pred             CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162           52 SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        52 ~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ..+||+|++++++|.++-   +.+++...++|+|||.|+++-+-
T Consensus       100 ~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF  143 (204)
T PF06080_consen  100 PESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPF  143 (204)
T ss_pred             CCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence            569999999999998874   88999999999999999999764

The function of this family is unknown.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=95.75  E-value=0.038  Score=50.02  Aligned_cols=74  Identities=11%  Similarity=0.026  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecc---cc---c--------cCC--------h-HHH
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS---SS---H--------ELP--------G-DQL   72 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~---~l---~--------~~~--------~-~~~   72 (271)
                      ++.+++.+++....   ....++.+..+|+..++.....||+|+.-.   ..   .        +..        . .++
T Consensus       105 ~~~~l~~~~~n~~~---~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~i  181 (264)
T TIGR00446       105 SKSRTKVLIANINR---CGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKEL  181 (264)
T ss_pred             CHHHHHHHHHHHHH---cCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHH
Confidence            44555555554311   111357888888887766666799999621   11   0        100        1 458


Q ss_pred             HHHHHHhccCCcEEEEEecC
Q 024162           73 LEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        73 L~ei~RvLKPGG~l~i~~~~   92 (271)
                      |.++.+.|||||+|+.++-.
T Consensus       182 L~~a~~~lkpgG~lvYstcs  201 (264)
T TIGR00446       182 IDSAFDALKPGGVLVYSTCS  201 (264)
T ss_pred             HHHHHHhcCCCCEEEEEeCC
Confidence            99999999999999988765

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=95.71  E-value=0.017  Score=52.79  Aligned_cols=85  Identities=18%  Similarity=0.198  Sum_probs=59.7

Q ss_pred             CCeEEEeccCCCCCCCC---CceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC-C--Cc-----ccHHHHH
Q 024162           36 PQIITQASSLSQLPVES---FSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT-S--DK-----GDVDKAI  103 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~~---~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~-~--~~-----~e~~~~~  103 (271)
                      .++....||...+..++   ++||+|++.+-+--.++ -+.|..|+++|||||.++=.-+.. +  ..     ..+.-++
T Consensus       144 ~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~  223 (270)
T PF07942_consen  144 SNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSL  223 (270)
T ss_pred             CceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCH
Confidence            56788889988876555   79999998765555555 789999999999999665433211 1  10     0123346


Q ss_pred             HHHHHHHHHcCCcchhh
Q 024162          104 SALEGKLLLAGFLDAQR  120 (271)
Q Consensus       104 ~~l~~~l~laGF~~v~~  120 (271)
                      +++...+...||..+..
T Consensus       224 eEi~~l~~~~GF~~~~~  240 (270)
T PF07942_consen  224 EEIKELIEKLGFEIEKE  240 (270)
T ss_pred             HHHHHHHHHCCCEEEEE
Confidence            68888888899987654

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=95.71  E-value=0.077  Score=46.00  Aligned_cols=77  Identities=18%  Similarity=0.208  Sum_probs=51.0

Q ss_pred             CCCeEEEeccCCC-CC--CCCCceeEEEeccccccC---------ChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHH
Q 024162           35 DPQIITQASSLSQ-LP--VESFSIDTVLSISSSHEL---------PGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKA  102 (271)
Q Consensus        35 ~~~v~~~~~d~e~-lp--~~~~sfD~V~s~~~l~~~---------~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~  102 (271)
                      ..++.++++++.. +.  ++++++|.|+..+.--|.         ..+.++.+++++|+|||.|.+.+-.       ...
T Consensus        66 l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~-------~~y  138 (195)
T PF02390_consen   66 LKNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV-------EEY  138 (195)
T ss_dssp             TSSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES--------HHH
T ss_pred             ccceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC-------HHH
Confidence            3688999999876 33  567999999998752222         2389999999999999999998743       222


Q ss_pred             HHHHHHHHHH--cCCcch
Q 024162          103 ISALEGKLLL--AGFLDA  118 (271)
Q Consensus       103 ~~~l~~~l~l--aGF~~v  118 (271)
                      ...+...+..  .+|..+
T Consensus       139 ~~~~~~~~~~~~~~f~~~  156 (195)
T PF02390_consen  139 AEWMLEQFEESHPGFENI  156 (195)
T ss_dssp             HHHHHHHHHHHSTTEEEE
T ss_pred             HHHHHHHHHhcCcCeEEc
Confidence            2344444544  366554

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00536 hemK_fam HemK family putative methylases

Probab=95.66  E-value=0.13  Score=46.93  Aligned_cols=95  Identities=20%  Similarity=0.196  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccc-------------cccCC------------h-
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISS-------------SHELP------------G-   69 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~-------------l~~~~------------~-   69 (271)
                      ++.+++.+++.....  ....++.++++++.+ +++...||+|+++-.             .+|-+            . 
T Consensus       147 s~~al~~a~~n~~~~--~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~  223 (284)
T TIGR00536       147 SPDALAVAEENAEKN--QLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNIL  223 (284)
T ss_pred             CHHHHHHHHHHHHHc--CCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHH
Confidence            566777777653211  111348899998865 455558999999521             11111            1 


Q ss_pred             HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHH-HcCCcchhhh
Q 024162           70 DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLL-LAGFLDAQRI  121 (271)
Q Consensus        70 ~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~-laGF~~v~~~  121 (271)
                      ..++.++.+.|+|||.|++.....     ...   .+...+. ..||.+++..
T Consensus       224 ~~ii~~a~~~L~~gG~l~~e~g~~-----q~~---~~~~~~~~~~~~~~~~~~  268 (284)
T TIGR00536       224 RQIIELAPDYLKPNGFLVCEIGNW-----QQK---SLKELLRIKFTWYDVENG  268 (284)
T ss_pred             HHHHHHHHHhccCCCEEEEEECcc-----HHH---HHHHHHHhcCCCceeEEe
Confidence            467888999999999998876541     111   3333344 3588765543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=95.52  E-value=0.11  Score=50.23  Aligned_cols=94  Identities=18%  Similarity=0.216  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCC-CCceeEEEecccccc-------------------C--Ch----
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVE-SFSIDTVLSISSSHE-------------------L--PG----   69 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~-~~sfD~V~s~~~l~~-------------------~--~~----   69 (271)
                      ++.|++.+++....    .+.++.++++|+.+..++ ..+||+|+++-....                   .  .+    
T Consensus       284 S~~ALe~AreNa~~----~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~  359 (423)
T PRK14966        284 SPPALETARKNAAD----LGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSC  359 (423)
T ss_pred             CHHHHHHHHHHHHH----cCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHH
Confidence            67888888877421    224688999998654332 458999999653210                   0  01    


Q ss_pred             -HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           70 -DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        70 -~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                       ..++.++.+.|+|||.+++....     ...   +.+...+...||..++..
T Consensus       360 yr~Ii~~a~~~LkpgG~lilEiG~-----~Q~---e~V~~ll~~~Gf~~v~v~  404 (423)
T PRK14966        360 IRTLAQGAPDRLAEGGFLLLEHGF-----DQG---AAVRGVLAENGFSGVETL  404 (423)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEECc-----cHH---HHHHHHHHHCCCcEEEEE
Confidence             35666677899999998875533     111   245566777899765543

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=95.49  E-value=0.059  Score=52.42  Aligned_cols=74  Identities=19%  Similarity=0.156  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecc---c---c------ccCCh-----------HHH
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS---S---S------HELPG-----------DQL   72 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~---~---l------~~~~~-----------~~~   72 (271)
                      ++.|++.++++....   .-.+|.++.+++..++ ++++||+|+.-.   .   +      .|...           ..+
T Consensus       284 s~~~l~~~~~~~~~~---g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~i  359 (445)
T PRK14904        284 YPQKLEKIRSHASAL---GITIIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAEL  359 (445)
T ss_pred             CHHHHHHHHHHHHHh---CCCeEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHH
Confidence            566666666653211   1135788999988775 567899999621   1   0      11111           358


Q ss_pred             HHHHHHhccCCcEEEEEecCC
Q 024162           73 LEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        73 L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      |.++++.|||||+|++++.+.
T Consensus       360 L~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        360 LDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             HHHHHHhcCCCcEEEEEeCCC
Confidence            999999999999999998764

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=95.45  E-value=0.12  Score=47.81  Aligned_cols=71  Identities=21%  Similarity=0.315  Sum_probs=50.6

Q ss_pred             CceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhhhhccccCcce
Q 024162           53 FSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEV  131 (271)
Q Consensus        53 ~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~  131 (271)
                      ..||+|+++-.-   .. ..+..++.+.|||||+++++-...       +-...+...+..+||..+......       
T Consensus       228 ~~~DvIVANILA---~vl~~La~~~~~~lkpgg~lIlSGIl~-------~q~~~V~~a~~~~gf~v~~~~~~~-------  290 (300)
T COG2264         228 GPFDVIVANILA---EVLVELAPDIKRLLKPGGRLILSGILE-------DQAESVAEAYEQAGFEVVEVLERE-------  290 (300)
T ss_pred             CcccEEEehhhH---HHHHHHHHHHHHHcCCCceEEEEeehH-------hHHHHHHHHHHhCCCeEeEEEecC-------
Confidence            599999996411   11 678899999999999999986442       112355666778999987665432       


Q ss_pred             eEEEEEeeC
Q 024162          132 VSFGVKGKK  140 (271)
Q Consensus       132 ~~~~i~a~K  140 (271)
                      .+++++.+|
T Consensus       291 eW~~i~~kr  299 (300)
T COG2264         291 EWVAIVGKR  299 (300)
T ss_pred             CEEEEEEEc
Confidence            477777776

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=95.36  E-value=0.13  Score=50.07  Aligned_cols=75  Identities=13%  Similarity=0.129  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-CCCCceeEEEecc---ccccC---C----------------h-HH
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSIS---SSHEL---P----------------G-DQ   71 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-~~~~sfD~V~s~~---~l~~~---~----------------~-~~   71 (271)
                      ++.+++.++++....   .-.++.+.++|+..++ +..++||.|++-.   .+..+   +                . .+
T Consensus       271 s~~rl~~~~~n~~r~---g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~  347 (431)
T PRK14903        271 SREKIQLVEKHAKRL---KLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLR  347 (431)
T ss_pred             CHHHHHHHHHHHHHc---CCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHH
Confidence            456666666653211   1134788899988776 5567899999621   11111   1                1 45


Q ss_pred             HHHHHHHhccCCcEEEEEecCC
Q 024162           72 LLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        72 ~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      +|.++++.|||||+|++++.+-
T Consensus       348 iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        348 IVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             HHHHHHHhcCCCCEEEEEECCC
Confidence            6889999999999999998764

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.32  E-value=0.014  Score=52.13  Aligned_cols=98  Identities=15%  Similarity=0.135  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCC-CCC-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLS-QLP-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e-~lp-~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      |++|++.+++|.--.        ...++++. -++ ..+..||+|.+.-++.++.+ +.++.-+...|+|||.|.|+.-.
T Consensus       156 S~nMl~kA~eKg~YD--------~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~  227 (287)
T COG4976         156 SENMLAKAHEKGLYD--------TLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVET  227 (287)
T ss_pred             hHHHHHHHHhccchH--------HHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence            899999999986211        11223333 222 55788999999999999988 89999999999999999998532


Q ss_pred             CCC-----cccHH---HHHHHHHHHHHHcCCcchhhh
Q 024162           93 TSD-----KGDVD---KAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        93 ~~~-----~~e~~---~~~~~l~~~l~laGF~~v~~~  121 (271)
                      ...     .....   ..-..+...+...||..++..
T Consensus       228 l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~  264 (287)
T COG4976         228 LPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIE  264 (287)
T ss_pred             cCCCCCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence            211     11111   112345677889999876554

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=95.31  E-value=0.035  Score=51.97  Aligned_cols=68  Identities=13%  Similarity=0.017  Sum_probs=47.5

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      .++.|++.++++...   ....++.++++|+...+.....||+|++......+     ...+.+.|+|||++++..
T Consensus       113 is~~~l~~Ar~~l~~---~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~i-----p~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        113 YSRKICEIAKRNVRR---LGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVDEV-----PETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             CCHHHHHHHHHHHHH---cCCCcEEEEeCChhhcccccCCccEEEECCchHHh-----HHHHHHhcCCCCEEEEEe
Confidence            356788888775321   11145788899987766566789999987544333     345789999999998865

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=95.27  E-value=0.02  Score=46.27  Aligned_cols=73  Identities=25%  Similarity=0.345  Sum_probs=48.1

Q ss_pred             CCCeEEEeccCCC-CCCCCCceeEEEe-ccccccCC---hHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHH
Q 024162           35 DPQIITQASSLSQ-LPVESFSIDTVLS-ISSSHELP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGK  109 (271)
Q Consensus        35 ~~~v~~~~~d~e~-lp~~~~sfD~V~s-~~~l~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~  109 (271)
                      +..+....+|+.. ++--...||+|+. -++...-+   +.+++++|+|.++|||+|......           ..+++.
T Consensus        30 ~v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a-----------~~Vr~~   98 (124)
T PF05430_consen   30 NVTLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSA-----------GAVRRA   98 (124)
T ss_dssp             TEEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B-----------HHHHHH
T ss_pred             CEEEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech-----------HHHHHH
Confidence            3455667788753 3433478999997 23322222   288999999999999999866543           267889


Q ss_pred             HHHcCCcch
Q 024162          110 LLLAGFLDA  118 (271)
Q Consensus       110 l~laGF~~v  118 (271)
                      |..+||...
T Consensus        99 L~~aGF~v~  107 (124)
T PF05430_consen   99 LQQAGFEVE  107 (124)
T ss_dssp             HHHCTEEEE
T ss_pred             HHHcCCEEE
Confidence            999999853

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=95.26  E-value=0.16  Score=38.22  Aligned_cols=56  Identities=36%  Similarity=0.504  Sum_probs=43.0

Q ss_pred             eEEEeccCCC--CCCCC-CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCC
Q 024162           38 IITQASSLSQ--LPVES-FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        38 v~~~~~d~e~--lp~~~-~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      +.+..++...  +++.. ..||++......++......+.++.++|+|+|.+++.....
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  158 (257)
T COG0500         100 VDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR  158 (257)
T ss_pred             eEEEEeccccCCCCCCCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            5677777765  78887 59999944444444445889999999999999999998764

>PLN02366 spermidine synthase

Probab=95.24  E-value=0.061  Score=50.04  Aligned_cols=75  Identities=19%  Similarity=0.242  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHhCch-hhhcCCCCeEEEeccCCCC--CCCCCceeEEEeccccccC-----ChHHHHHHHHHhccCCcEEE
Q 024162           16 VSAVLNAIRDLGDE-AVEQCDPQIITQASSLSQL--PVESFSIDTVLSISSSHEL-----PGDQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        16 s~~mv~~ar~~~~~-~~~~~~~~v~~~~~d~e~l--p~~~~sfD~V~s~~~l~~~-----~~~~~L~ei~RvLKPGG~l~   87 (271)
                      .+.|++.+|+.... .....++++.++.+|+...  ..+.+.||+|++-....+.     ...++++.+++.|+|||.++
T Consensus       124 D~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv  203 (308)
T PLN02366        124 DKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVC  203 (308)
T ss_pred             CHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence            46789999886421 1112456889999986432  1235689999985432221     23689999999999999998


Q ss_pred             EEe
Q 024162           88 IYK   90 (271)
Q Consensus        88 i~~   90 (271)
                      ++.
T Consensus       204 ~q~  206 (308)
T PLN02366        204 TQA  206 (308)
T ss_pred             ECc
Confidence            764

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=94.88  E-value=0.12  Score=50.16  Aligned_cols=73  Identities=18%  Similarity=0.140  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEeccc---cc---------cCC-----------hH
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISS---SH---------ELP-----------GD   70 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~---l~---------~~~-----------~~   70 (271)
                      ++.+++.+++....   ..-.++.++++|+..++  ++ ++||+|++...   +.         |..           ..
T Consensus       284 ~~~~l~~~~~n~~~---~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~  359 (444)
T PRK14902        284 HEHKLKLIEENAKR---LGLTNIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQL  359 (444)
T ss_pred             CHHHHHHHHHHHHH---cCCCeEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHH
Confidence            35566666654311   11134888999988763  33 78999997321   10         100           03


Q ss_pred             HHHHHHHHhccCCcEEEEEecC
Q 024162           71 QLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        71 ~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .+|.+++++|||||+|++++-.
T Consensus       360 ~iL~~a~~~LkpGG~lvystcs  381 (444)
T PRK14902        360 EILESVAQYLKKGGILVYSTCT  381 (444)
T ss_pred             HHHHHHHHHcCCCCEEEEEcCC
Confidence            5799999999999999987754

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=94.87  E-value=0.1  Score=48.78  Aligned_cols=56  Identities=20%  Similarity=0.155  Sum_probs=43.3

Q ss_pred             CeEEEeccCC------CCCCCCCceeEEEeccccccC-Ch----HHHHHHHHHhccCCcEEEEEecC
Q 024162           37 QIITQASSLS------QLPVESFSIDTVLSISSSHEL-PG----DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        37 ~v~~~~~d~e------~lp~~~~sfD~V~s~~~l~~~-~~----~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .+.|..+|-.      .+++++.+||+|-+-+++|+. .+    +-+|+.+.+.|||||.|+-+.+.
T Consensus       173 ~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd  239 (389)
T KOG1975|consen  173 TAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD  239 (389)
T ss_pred             eeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence            4566666643      345667779999998888874 32    67899999999999999988876

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=94.82  E-value=0.14  Score=47.49  Aligned_cols=73  Identities=14%  Similarity=0.140  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccc-------------ccCC-----------h--
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS-------------HELP-----------G--   69 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l-------------~~~~-----------~--   69 (271)
                      ++.+++.+++.....  ....++.++++|+.. +++..+||+|+++-..             ++.+           .  
T Consensus       166 s~~al~~A~~n~~~~--~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~  242 (307)
T PRK11805        166 SPDALAVAEINIERH--GLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLV  242 (307)
T ss_pred             CHHHHHHHHHHHHHh--CCCCcEEEEECchhh-hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHH
Confidence            567777777664211  112358899999754 2345689999986211             1111           1  


Q ss_pred             HHHHHHHHHhccCCcEEEEEec
Q 024162           70 DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        70 ~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      ..+++++.+.|+|||++++...
T Consensus       243 ~~i~~~a~~~L~pgG~l~~E~g  264 (307)
T PRK11805        243 RRILAEAPDYLTEDGVLVVEVG  264 (307)
T ss_pred             HHHHHHHHHhcCCCCEEEEEEC
Confidence            4678889999999999998654

>TIGR00417 speE spermidine synthase

Probab=94.80  E-value=0.13  Score=46.65  Aligned_cols=75  Identities=15%  Similarity=0.134  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHhCchh-hhcCCCCeEEEeccCCC-CCCCCCceeEEEecccccc-----CChHHHHHHHHHhccCCcEEEE
Q 024162           16 VSAVLNAIRDLGDEA-VEQCDPQIITQASSLSQ-LPVESFSIDTVLSISSSHE-----LPGDQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~~-~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~l~~-----~~~~~~L~ei~RvLKPGG~l~i   88 (271)
                      .+.|++.+++..... ......++.++.+|... +.-..+.||+|++-.....     +...++++.+.+.|+|||.+++
T Consensus       105 d~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~  184 (270)
T TIGR00417       105 DEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVA  184 (270)
T ss_pred             CHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEE
Confidence            567788888753110 01123567777776543 2222568999998543221     1136889999999999999998


Q ss_pred             Ee
Q 024162           89 YK   90 (271)
Q Consensus        89 ~~   90 (271)
                      ..
T Consensus       185 ~~  186 (270)
T TIGR00417       185 QS  186 (270)
T ss_pred             cC
Confidence            74

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=94.79  E-value=0.051  Score=47.76  Aligned_cols=69  Identities=17%  Similarity=0.142  Sum_probs=46.7

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      ..+.+++.|+++-..   ....+|.++++|....--....||.|+.......++     ..+.+.||+||+|++-..
T Consensus       105 ~~~~l~~~A~~~l~~---~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip-----~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  105 RDPELAERARRNLAR---LGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIP-----EALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             SBHHHHHHHHHHHHH---HTTHSEEEEES-GGGTTGGG-SEEEEEESSBBSS-------HHHHHTEEEEEEEEEEES
T ss_pred             ccHHHHHHHHHHHHH---hccCceeEEEcchhhccccCCCcCEEEEeeccchHH-----HHHHHhcCCCcEEEEEEc
Confidence            356777888776321   122478999999865433456899999987765554     558888999999998654

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=94.67  E-value=0.052  Score=47.14  Aligned_cols=71  Identities=24%  Similarity=0.270  Sum_probs=48.9

Q ss_pred             eEEEeccCC-CCC-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcC
Q 024162           38 IITQASSLS-QLP-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG  114 (271)
Q Consensus        38 v~~~~~d~e-~lp-~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laG  114 (271)
                      +..+++|++ .|+ |++.+||.|+.+.+++++.. ..+|.|+.|+   |.+.+++-++-   +-+     ..+..+.+.|
T Consensus        57 v~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNF---g~W-----~~R~~l~~~G  125 (193)
T PF07021_consen   57 VSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNF---GHW-----RNRLQLLLRG  125 (193)
T ss_pred             CCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecCh---HHH-----HHHHHHHhcC
Confidence            345778886 454 99999999999999999876 8999999888   44556555441   111     2233455666


Q ss_pred             Ccchh
Q 024162          115 FLDAQ  119 (271)
Q Consensus       115 F~~v~  119 (271)
                      =+.+.
T Consensus       126 rmPvt  130 (193)
T PF07021_consen  126 RMPVT  130 (193)
T ss_pred             CCCCC
Confidence            66544

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=94.65  E-value=0.072  Score=46.55  Aligned_cols=52  Identities=17%  Similarity=0.251  Sum_probs=35.8

Q ss_pred             HHHHHHHHHhccCCcEEEEEecCCCCcccHH-------HHHHHHHHHHHHcCCcchhhh
Q 024162           70 DQLLEEISRVLKPGGTILIYKKLTSDKGDVD-------KAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        70 ~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~-------~~~~~l~~~l~laGF~~v~~~  121 (271)
                      ..+.+++++.|||||.+.+.++....-..+.       .....+..+...+||.-..+.
T Consensus       146 ~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS  204 (238)
T COG4798         146 AKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAES  204 (238)
T ss_pred             HHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeee
Confidence            8899999999999999999997643111111       112355677888999865443

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=94.64  E-value=0.1  Score=51.08  Aligned_cols=73  Identities=27%  Similarity=0.388  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC-h----------HHHHHHHHHhccCCc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-G----------DQLLEEISRVLKPGG   84 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~-~----------~~~L~ei~RvLKPGG   84 (271)
                      |...++.+..+..    ....-+.|...++..+.|+++|||+|+.-..++.+. +          ...+.+++|+|+|||
T Consensus        80 S~V~V~~m~~~~~----~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~g  155 (482)
T KOG2352|consen   80 SSVVVAAMQVRNA----KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGG  155 (482)
T ss_pred             cHHHHHHHHhccc----cCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCC
Confidence            4445555555542    233567889999999999999999999866554332 1          456789999999999


Q ss_pred             EEEEEecC
Q 024162           85 TILIYKKL   92 (271)
Q Consensus        85 ~l~i~~~~   92 (271)
                      +++..+..
T Consensus       156 k~~svtl~  163 (482)
T KOG2352|consen  156 KYISVTLV  163 (482)
T ss_pred             EEEEEEee
Confidence            99888773

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=94.42  E-value=0.05  Score=49.03  Aligned_cols=44  Identities=23%  Similarity=0.450  Sum_probs=34.8

Q ss_pred             CCCCCCceeEEEeccccccCC----h---HHHHHHHHHhccCCcEEEEEec
Q 024162           48 LPVESFSIDTVLSISSSHELP----G---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        48 lp~~~~sfD~V~s~~~l~~~~----~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      +.+....||+|++.....|++    +   ..+++.|++.|.|||+|++...
T Consensus       160 l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ  210 (288)
T KOG2899|consen  160 LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ  210 (288)
T ss_pred             hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence            346677899999977655543    3   7899999999999999998653

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=94.41  E-value=0.17  Score=45.71  Aligned_cols=76  Identities=17%  Similarity=0.295  Sum_probs=53.0

Q ss_pred             CCeEEEeccCCCCCCC---CCceeEEEeccccccCChHHHHHHHHHhc-cCCcEEEEEecCCCCcccHHHHHHHHHHHHH
Q 024162           36 PQIITQASSLSQLPVE---SFSIDTVLSISSSHELPGDQLLEEISRVL-KPGGTILIYKKLTSDKGDVDKAISALEGKLL  111 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~---~~sfD~V~s~~~l~~~~~~~~L~ei~RvL-KPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~  111 (271)
                      .+|.+.+.|+..-.|+   ++.||+|+.=..-    +..++..+.++| ||||++.+..+.      +.+ .+.+...|.
T Consensus        92 ~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~----Pw~~i~~~~~~L~~~gG~i~~fsP~------ieQ-v~~~~~~L~  160 (247)
T PF08704_consen   92 DNVTVHHRDVCEEGFDEELESDFDAVFLDLPD----PWEAIPHAKRALKKPGGRICCFSPC------IEQ-VQKTVEALR  160 (247)
T ss_dssp             TTEEEEES-GGCG--STT-TTSEEEEEEESSS----GGGGHHHHHHHE-EEEEEEEEEESS------HHH-HHHHHHHHH
T ss_pred             CCceeEecceecccccccccCcccEEEEeCCC----HHHHHHHHHHHHhcCCceEEEECCC------HHH-HHHHHHHHH
Confidence            4688999999654443   3689999884321    256789999999 999999998765      222 124456678


Q ss_pred             HcCCcchhhhh
Q 024162          112 LAGFLDAQRIQ  122 (271)
Q Consensus       112 laGF~~v~~~~  122 (271)
                      ..||.+++..+
T Consensus       161 ~~gf~~i~~~E  171 (247)
T PF08704_consen  161 EHGFTDIETVE  171 (247)
T ss_dssp             HTTEEEEEEEE
T ss_pred             HCCCeeeEEEE
Confidence            88999987765

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.32  E-value=0.17  Score=44.48  Aligned_cols=68  Identities=19%  Similarity=0.235  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      ++++.+.||++-.   .....+|..+++|...-=-+...||.|+.......+|     ..+..-|||||++++-..
T Consensus       103 ~~~L~~~A~~~L~---~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP-----~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         103 IEELAEQARRNLE---TLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVP-----EALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             cHHHHHHHHHHHH---HcCCCceEEEECCcccCCCCCCCcCEEEEeeccCCCC-----HHHHHhcccCCEEEEEEc
Confidence            5677777877631   1223458899999865422347899999987766665     567888999999998876

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=94.05  E-value=0.15  Score=45.37  Aligned_cols=56  Identities=16%  Similarity=0.171  Sum_probs=43.2

Q ss_pred             CeEEEeccCCCC---CCCCCceeEEEeccccccC---------ChHHHHHHHHHhccCCcEEEEEecC
Q 024162           37 QIITQASSLSQL---PVESFSIDTVLSISSSHEL---------PGDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        37 ~v~~~~~d~e~l---p~~~~sfD~V~s~~~l~~~---------~~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++..+..|+..+   -+++++.|-|+.++.--|.         -.+.+++.+.|+|||||.|.+.+-.
T Consensus        99 Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~  166 (227)
T COG0220          99 NLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN  166 (227)
T ss_pred             cEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence            788888888754   2455699999998753332         1278999999999999999998743

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=93.89  E-value=0.79  Score=42.42  Aligned_cols=111  Identities=13%  Similarity=0.117  Sum_probs=72.5

Q ss_pred             EEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-CC--CCceeEEEeccccccCCh----HHHHHHHHH
Q 024162            6 LALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VE--SFSIDTVLSISSSHELPG----DQLLEEISR   78 (271)
Q Consensus         6 l~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-~~--~~sfD~V~s~~~l~~~~~----~~~L~ei~R   78 (271)
                      +++-|-+..+++.--+++++++-      ...+.|.++|+-+.. +.  .-..++++.+-.+..+++    ...|+-+++
T Consensus       164 i~LrDys~~Nv~~g~~li~~~gL------~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~  237 (311)
T PF12147_consen  164 ILLRDYSPINVEKGRALIAERGL------EDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLAR  237 (311)
T ss_pred             EEEEeCCHHHHHHHHHHHHHcCC------ccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHH
Confidence            35566666777777777777651      134588888875431 22  334678877666666776    457888999


Q ss_pred             hccCCcEEEEEe--cCCCC---------c-c--c---HHHHHHHHHHHHHHcCCcchhhhh
Q 024162           79 VLKPGGTILIYK--KLTSD---------K-G--D---VDKAISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus        79 vLKPGG~l~i~~--~~~~~---------~-~--e---~~~~~~~l~~~l~laGF~~v~~~~  122 (271)
                      +|.|||.|+.+.  |++.-         + .  .   .++.-.++......|||..+...-
T Consensus       238 al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q~I  298 (311)
T PF12147_consen  238 ALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQRI  298 (311)
T ss_pred             HhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhhhee
Confidence            999999999986  55420         0 0  0   011234677788999999876653

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=93.85  E-value=0.15  Score=44.21  Aligned_cols=95  Identities=17%  Similarity=0.163  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecc-----ccc-cCCh---HHHHHHHHHhccCCcEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS-----SSH-ELPG---DQLLEEISRVLKPGGTI   86 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~-----~l~-~~~~---~~~L~ei~RvLKPGG~l   86 (271)
                      ++..+++|+..+.+.  .....|.|.+.|+..-.+..+.||+|+---     +++ .-+.   .-.+..+-++|+|||+|
T Consensus       100 s~~AV~LA~niAe~~--~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gif  177 (227)
T KOG1271|consen  100 SEKAVELAQNIAERD--GFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIF  177 (227)
T ss_pred             CHHHHHHHHHHHHhc--CCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEE
Confidence            667777777765321  122349999999998788899999998521     222 1111   34577889999999999


Q ss_pred             EEEecCCCCcccHHHHHHHHHHHHHHcCCcchhh
Q 024162           87 LIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        87 ~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~  120 (271)
                      +|..-+-    -    .++|...+...||.....
T Consensus       178 vItSCN~----T----~dELv~~f~~~~f~~~~t  203 (227)
T KOG1271|consen  178 VITSCNF----T----KDELVEEFENFNFEYLST  203 (227)
T ss_pred             EEEecCc----c----HHHHHHHHhcCCeEEEEe
Confidence            9986441    1    124555566666655433

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=93.78  E-value=0.14  Score=45.24  Aligned_cols=54  Identities=24%  Similarity=0.398  Sum_probs=42.0

Q ss_pred             CCeEEEeccCCCCCCCC-CceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEE
Q 024162           36 PQIITQASSLSQLPVES-FSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~~-~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~   89 (271)
                      .+|.+.++|+-+++-.. +.||+|+=...++-++.   +...+.++++|+|||++++.
T Consensus        97 ~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi  154 (218)
T PF05724_consen   97 GRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI  154 (218)
T ss_dssp             SSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred             CceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence            46889999998887544 47999998777777765   88999999999999994433

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK00536 speE spermidine synthase; Provisional

Probab=93.71  E-value=0.41  Score=43.59  Aligned_cols=92  Identities=12%  Similarity=0.124  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhCch-hhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDE-AVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~-~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      -++|++++|+.... ...-.++++..+.. +.+  ...++||+|+.=..    .++.+++.++|+|+|||.++.+..++-
T Consensus       103 D~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvDs~----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~  175 (262)
T PRK00536        103 DEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICLQE----PDIHKIDGLKRMLKEDGVFISVAKHPL  175 (262)
T ss_pred             CHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEcCC----CChHHHHHHHHhcCCCcEEEECCCCcc
Confidence            35678888884211 11235567766542 211  12468999997432    458899999999999999998865432


Q ss_pred             CcccHHHHHHHHHHHHHHcCCcch
Q 024162           95 DKGDVDKAISALEGKLLLAGFLDA  118 (271)
Q Consensus        95 ~~~e~~~~~~~l~~~l~laGF~~v  118 (271)
                      .  . ......+.+.+.. .|..+
T Consensus       176 ~--~-~~~~~~i~~~l~~-~F~~v  195 (262)
T PRK00536        176 L--E-HVSMQNALKNMGD-FFSIA  195 (262)
T ss_pred             c--C-HHHHHHHHHHHHh-hCCce
Confidence            1  1 2223344454544 56543

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=93.70  E-value=0.23  Score=46.81  Aligned_cols=91  Identities=20%  Similarity=0.181  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEec-cCCCCCCCCCceeEEEecc-----c-cccC--Ch--HHHHHHHHHhccCCc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQAS-SLSQLPVESFSIDTVLSIS-----S-SHEL--PG--DQLLEEISRVLKPGG   84 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~-d~e~lp~~~~sfD~V~s~~-----~-l~~~--~~--~~~L~ei~RvLKPGG   84 (271)
                      .+.|++-++..-..   ..-....+... |+.++||++++||.|++=.     + ..-.  ..  .++|..++++||+||
T Consensus       228 d~~mv~gak~Nl~~---y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG  304 (347)
T COG1041         228 DERMVRGAKINLEY---YGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGG  304 (347)
T ss_pred             HHHHHhhhhhhhhh---hCcCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCc
Confidence            56777777765311   11123333444 9999999999999999822     1 1111  22  789999999999999


Q ss_pred             EEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           85 TILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        85 ~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                      ++++..+.            .-..++..+||..+...
T Consensus       305 ~~vf~~p~------------~~~~~~~~~~f~v~~~~  329 (347)
T COG1041         305 RIVFAAPR------------DPRHELEELGFKVLGRF  329 (347)
T ss_pred             EEEEecCC------------cchhhHhhcCceEEEEE
Confidence            99988763            11245777888876554

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=93.55  E-value=0.85  Score=40.63  Aligned_cols=113  Identities=19%  Similarity=0.191  Sum_probs=74.1

Q ss_pred             ccEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC---CCCCCceeEEEeccccccCCh-HHHHHHHHH
Q 024162            3 SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL---PVESFSIDTVLSISSSHELPG-DQLLEEISR   78 (271)
Q Consensus         3 ~~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l---p~~~~sfD~V~s~~~l~~~~~-~~~L~ei~R   78 (271)
                      .++.++++-+.-+.+.+++++++|.         +|.-+.+|+..-   ..--+.+|+|++-.+  .-.. +-++.....
T Consensus        98 ~G~VYaVEfs~r~~rdL~~la~~R~---------NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~  166 (229)
T PF01269_consen   98 DGVVYAVEFSPRSMRDLLNLAKKRP---------NIIPILEDARHPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARH  166 (229)
T ss_dssp             TSEEEEEESSHHHHHHHHHHHHHST---------TEEEEES-TTSGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHH
T ss_pred             CCcEEEEEecchhHHHHHHHhccCC---------ceeeeeccCCChHHhhcccccccEEEecCC--ChHHHHHHHHHHHh
Confidence            5688888888888999999999884         466666777522   122348999998433  1122 567777888


Q ss_pred             hccCCcEEEEEecCC--CCcccHHHHHHHHHHHHHHcCCcchhhhhhccc
Q 024162           79 VLKPGGTILIYKKLT--SDKGDVDKAISALEGKLLLAGFLDAQRIQLKSV  126 (271)
Q Consensus        79 vLKPGG~l~i~~~~~--~~~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~  126 (271)
                      .||+||.+++.--..  +...+....+..-...|...||...+.....|+
T Consensus       167 fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy  216 (229)
T PF01269_consen  167 FLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPY  216 (229)
T ss_dssp             HEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTT
T ss_pred             hccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCC
Confidence            999999999876432  111233445556667788889998877766664

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=93.46  E-value=0.64  Score=41.76  Aligned_cols=88  Identities=16%  Similarity=0.189  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CCC-CCCceeEEEeccccc------cCC----------------h--
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPV-ESFSIDTVLSISSSH------ELP----------------G--   69 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp~-~~~sfD~V~s~~~l~------~~~----------------~--   69 (271)
                      ++.+++.+++....    .  .+.++++|+.+ ++- ..+.||+|+++-...      .++                +  
T Consensus       119 s~~al~~A~~N~~~----~--~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl  192 (251)
T TIGR03704       119 DPAAVRCARRNLAD----A--GGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGL  192 (251)
T ss_pred             CHHHHHHHHHHHHH----c--CCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHH
Confidence            46677777765421    1  13677788754 221 135799999864321      000                0  


Q ss_pred             ---HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcc
Q 024162           70 ---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  117 (271)
Q Consensus        70 ---~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~  117 (271)
                         ..++..+.++|||||+|++.....    ..    ..+...+...||..
T Consensus       193 ~~~~~i~~~a~~~L~~gG~l~l~~~~~----~~----~~v~~~l~~~g~~~  235 (251)
T TIGR03704       193 DVLRRVAAGAPDWLAPGGHLLVETSER----QA----PLAVEAFARAGLIA  235 (251)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEECcc----hH----HHHHHHHHHCCCCc
Confidence               366777779999999999876431    11    24556677788864

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=93.41  E-value=0.07  Score=45.19  Aligned_cols=71  Identities=20%  Similarity=0.236  Sum_probs=50.4

Q ss_pred             CCceeEEEeccccccCC------------hHHHHHHHHHhccCCcEEEEEecCC-CCc-ccHHHHHHHHHHHHHHcCCcc
Q 024162           52 SFSIDTVLSISSSHELP------------GDQLLEEISRVLKPGGTILIYKKLT-SDK-GDVDKAISALEGKLLLAGFLD  117 (271)
Q Consensus        52 ~~sfD~V~s~~~l~~~~------------~~~~L~ei~RvLKPGG~l~i~~~~~-~~~-~e~~~~~~~l~~~l~laGF~~  117 (271)
                      .++||.+.+..++.|+.            +...+.++.++|||||.|++..+.- +.. ....+++..++..+.+.||.-
T Consensus        61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~  140 (177)
T PF03269_consen   61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW  140 (177)
T ss_pred             hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence            46799999877654432            2678999999999999999987642 211 223344556667789999987


Q ss_pred             hhhhh
Q 024162          118 AQRIQ  122 (271)
Q Consensus       118 v~~~~  122 (271)
                      +....
T Consensus       141 i~tfs  145 (177)
T PF03269_consen  141 IDTFS  145 (177)
T ss_pred             Eeeec
Confidence            76543

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=93.06  E-value=0.19  Score=42.08  Aligned_cols=69  Identities=6%  Similarity=0.011  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHh--ccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRV--LKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~Rv--LKPGG~l~i~~~   91 (271)
                      ++.|++.++++...     ..++.++.+|+.++++++..||.|+++..++..  ...+..+.+.  +.++|.|+++.-
T Consensus        44 ~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~~--~~~i~~~l~~~~~~~~~~l~~q~e  114 (169)
T smart00650       44 DPRLAPRLREKFAA-----ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNIS--TPILFKLLEEPPAFRDAVLMVQKE  114 (169)
T ss_pred             CHHHHHHHHHHhcc-----CCCEEEEECchhcCCccccCCCEEEECCCcccH--HHHHHHHHhcCCCcceEEEEEEHH
Confidence            46788888876421     246889999999999888889999998765532  3444444433  457888877753

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=92.97  E-value=0.081  Score=51.98  Aligned_cols=47  Identities=19%  Similarity=0.333  Sum_probs=37.4

Q ss_pred             CCCCCCCCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEEEecC
Q 024162           46 SQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        46 e~lp~~~~sfD~V~s~~~l~~~~~----~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      |.++.=+.+||+|.+...+....+    ..+|-||-|+|+|||.++|.+..
T Consensus       419 E~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~  469 (506)
T PF03141_consen  419 EAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV  469 (506)
T ss_pred             hccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence            456666789999998765544332    88999999999999999999854

; GO: 0008168 methyltransferase activity

>PLN02823 spermine synthase

Probab=92.92  E-value=0.26  Score=46.45  Aligned_cols=75  Identities=16%  Similarity=0.184  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhCch-hhhcCCCCeEEEeccCCC-CCCCCCceeEEEeccc-------cccCChHHHHH-HHHHhccCCcE
Q 024162           16 VSAVLNAIRDLGDE-AVEQCDPQIITQASSLSQ-LPVESFSIDTVLSISS-------SHELPGDQLLE-EISRVLKPGGT   85 (271)
Q Consensus        16 s~~mv~~ar~~~~~-~~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~-------l~~~~~~~~L~-ei~RvLKPGG~   85 (271)
                      .+++++++|+.... .....++++..+.+|+.. +.-..+.||+|+.-..       ...+...++++ .+.+.|+|||.
T Consensus       136 D~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gv  215 (336)
T PLN02823        136 DQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGI  215 (336)
T ss_pred             CHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcE
Confidence            67789999987421 011235778888888754 3444678999998421       11233478898 89999999999


Q ss_pred             EEEEe
Q 024162           86 ILIYK   90 (271)
Q Consensus        86 l~i~~   90 (271)
                      ++++-
T Consensus       216 lv~q~  220 (336)
T PLN02823        216 FVTQA  220 (336)
T ss_pred             EEEec
Confidence            88764

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=92.77  E-value=0.97  Score=44.87  Aligned_cols=94  Identities=17%  Similarity=0.180  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccc--------------cCC---------h---
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH--------------ELP---------G---   69 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~--------------~~~---------~---   69 (271)
                      ++.+++.+++.....  ....++.++++++.. +++.++||+|+++-...              +-+         .   
T Consensus       171 s~~al~~A~~N~~~~--~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~  247 (506)
T PRK01544        171 SLDAIEVAKSNAIKY--EVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQA  247 (506)
T ss_pred             CHHHHHHHHHHHHHc--CCccceeeeecchhh-hCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHH
Confidence            567777777663211  112357888888643 24456899999953110              100         0   


Q ss_pred             -HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhh
Q 024162           70 -DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        70 -~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~  120 (271)
                       ..++.++.+.|+|||.|++....     ...   ..+...+...||..+..
T Consensus       248 ~~~il~~a~~~L~~gG~l~lEig~-----~q~---~~v~~~~~~~g~~~~~~  291 (506)
T PRK01544        248 YFIIAENAKQFLKPNGKIILEIGF-----KQE---EAVTQIFLDHGYNIESV  291 (506)
T ss_pred             HHHHHHHHHHhccCCCEEEEEECC-----chH---HHHHHHHHhcCCCceEE
Confidence             34567888999999999876432     111   14455566789876544

>PRK13699 putative methylase; Provisional

Probab=92.46  E-value=0.26  Score=43.71  Aligned_cols=72  Identities=17%  Similarity=0.173  Sum_probs=43.1

Q ss_pred             EEeccCCCC--CCCCCceeEEEeccccc----c-----C-----Ch--HHHHHHHHHhccCCcEEEEEecCCCCcccHHH
Q 024162           40 TQASSLSQL--PVESFSIDTVLSISSSH----E-----L-----PG--DQLLEEISRVLKPGGTILIYKKLTSDKGDVDK  101 (271)
Q Consensus        40 ~~~~d~e~l--p~~~~sfD~V~s~~~l~----~-----~-----~~--~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~  101 (271)
                      ...+|.-++  .++++|+|+|+.--...    .     +     ..  ..++.|++|+|||||.+++.....    ... 
T Consensus         4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~----~~~-   78 (227)
T PRK13699          4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN----RVD-   78 (227)
T ss_pred             EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc----cHH-
Confidence            344555433  57788999998742110    0     0     01  578899999999999998643221    111 


Q ss_pred             HHHHHHHHHHHcCCcchh
Q 024162          102 AISALEGKLLLAGFLDAQ  119 (271)
Q Consensus       102 ~~~~l~~~l~laGF~~v~  119 (271)
                         .+...+..+||...+
T Consensus        79 ---~~~~al~~~GF~l~~   93 (227)
T PRK13699         79 ---RFMAAWKNAGFSVVG   93 (227)
T ss_pred             ---HHHHHHHHCCCEEee
Confidence               233456678987543

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=92.09  E-value=0.63  Score=43.10  Aligned_cols=73  Identities=21%  Similarity=0.178  Sum_probs=45.7

Q ss_pred             CCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhhhhccccCcc
Q 024162           51 ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAE  130 (271)
Q Consensus        51 ~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~  130 (271)
                      ....||+|+++-...-+  ...+..+.+.|+|||+|+++-....   ..    ..+...+.. ||..++.....      
T Consensus       222 ~~~~~dlvvANI~~~vL--~~l~~~~~~~l~~~G~lIlSGIl~~---~~----~~v~~a~~~-g~~~~~~~~~~------  285 (295)
T PF06325_consen  222 VEGKFDLVVANILADVL--LELAPDIASLLKPGGYLILSGILEE---QE----DEVIEAYKQ-GFELVEEREEG------  285 (295)
T ss_dssp             CCS-EEEEEEES-HHHH--HHHHHHCHHHEEEEEEEEEEEEEGG---GH----HHHHHHHHT-TEEEEEEEEET------
T ss_pred             ccccCCEEEECCCHHHH--HHHHHHHHHhhCCCCEEEEccccHH---HH----HHHHHHHHC-CCEEEEEEEEC------
Confidence            35899999996432111  5678889999999999999875421   11    244455554 99876554432      


Q ss_pred             eeEEEEEeeC
Q 024162          131 VVSFGVKGKK  140 (271)
Q Consensus       131 ~~~~~i~a~K  140 (271)
                       .++.+..+|
T Consensus       286 -~W~~l~~~K  294 (295)
T PF06325_consen  286 -EWVALVFKK  294 (295)
T ss_dssp             -TEEEEEEEE
T ss_pred             -CEEEEEEEe
Confidence             355555544

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=91.65  E-value=1.2  Score=40.00  Aligned_cols=77  Identities=16%  Similarity=0.143  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHhCchhh-hcCCCCeEEEeccCCCC-CCCCC-ceeEEEeccc-----cccCChHHHHHHHHHhccCCcEEE
Q 024162           16 VSAVLNAIRDLGDEAV-EQCDPQIITQASSLSQL-PVESF-SIDTVLSISS-----SHELPGDQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~-~~~~~~v~~~~~d~e~l-p~~~~-sfD~V~s~~~-----l~~~~~~~~L~ei~RvLKPGG~l~   87 (271)
                      .+.+++++++...... ...++++..+.+|.... .-... .||+|+.-..     ...+-..++++.+.+.|+|||.++
T Consensus       109 D~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v  188 (246)
T PF01564_consen  109 DPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLV  188 (246)
T ss_dssp             -HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred             ChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEE
Confidence            5678899988642211 13457888888887533 22233 8999997221     111334899999999999999999


Q ss_pred             EEecC
Q 024162           88 IYKKL   92 (271)
Q Consensus        88 i~~~~   92 (271)
                      +....
T Consensus       189 ~~~~~  193 (246)
T PF01564_consen  189 LQAGS  193 (246)
T ss_dssp             EEEEE
T ss_pred             EEccC
Confidence            98743

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=91.45  E-value=0.79  Score=45.52  Aligned_cols=57  Identities=12%  Similarity=0.231  Sum_probs=42.9

Q ss_pred             CCeEEEeccCCCC--CCCCCceeEEEeccccccCC---------hHHHHHHHHHhccCCcEEEEEecC
Q 024162           36 PQIITQASSLSQL--PVESFSIDTVLSISSSHELP---------GDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        36 ~~v~~~~~d~e~l--p~~~~sfD~V~s~~~l~~~~---------~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.++..+++.+  -|+++++|.|+.++.--|..         .+.++..++++|||||.|.+.+-.
T Consensus       397 ~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~  464 (506)
T PRK01544        397 TNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI  464 (506)
T ss_pred             CeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence            4566666766533  27889999999988533321         388999999999999999988743

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=91.02  E-value=0.84  Score=44.98  Aligned_cols=82  Identities=20%  Similarity=0.219  Sum_probs=52.8

Q ss_pred             cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-CCCCceeEEEe----ccc--c--------ccCC
Q 024162            4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLS----ISS--S--------HELP   68 (271)
Q Consensus         4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-~~~~sfD~V~s----~~~--l--------~~~~   68 (271)
                      +.|+..|....=...+.+.+++.+   +    .++.....|...++ ...+.||.|+.    +..  +        .|..
T Consensus       139 g~lvA~D~~~~R~~~L~~nl~r~G---~----~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~  211 (470)
T PRK11933        139 GAIVANEYSASRVKVLHANISRCG---V----SNVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSP  211 (470)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcC---C----CeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCH
Confidence            567777776666666666666543   2    34566667766553 33467999995    211  1        1111


Q ss_pred             -------h--HHHHHHHHHhccCCcEEEEEecC
Q 024162           69 -------G--DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        69 -------~--~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                             .  .++|...++.|||||+|+.++-+
T Consensus       212 ~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT  244 (470)
T PRK11933        212 ESNLEIAATQRELIESAFHALKPGGTLVYSTCT  244 (470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence                   1  56788899999999999888765

>PRK11524 putative methyltransferase; Provisional

Probab=90.96  E-value=0.32  Score=44.42  Aligned_cols=52  Identities=21%  Similarity=0.222  Sum_probs=36.5

Q ss_pred             EEEeccCCCC--CCCCCceeEEEeccccc-------c---CC-----h--HHHHHHHHHhccCCcEEEEEe
Q 024162           39 ITQASSLSQL--PVESFSIDTVLSISSSH-------E---LP-----G--DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        39 ~~~~~d~e~l--p~~~~sfD~V~s~~~l~-------~---~~-----~--~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      .++.+|..++  .+++++||+|++.-.+.       .   +.     .  ..++.+++|+|||||.|++..
T Consensus        10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524         10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            4566776653  46788999999942211       0   00     1  468899999999999999864

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=90.68  E-value=0.86  Score=42.96  Aligned_cols=52  Identities=19%  Similarity=0.296  Sum_probs=41.3

Q ss_pred             eEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162           38 IITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        38 v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      |..+-+++-+- .|.  -|+|+.-+.+|+|.|   -++|+.++..|+|||.+++.+..
T Consensus       223 V~~v~gdmfq~-~P~--~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V  277 (342)
T KOG3178|consen  223 VEHVAGDMFQD-TPK--GDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENV  277 (342)
T ss_pred             cceeccccccc-CCC--cCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            56666766533 332  349999999999987   78999999999999999999873

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=90.58  E-value=0.88  Score=44.56  Aligned_cols=53  Identities=15%  Similarity=0.276  Sum_probs=37.7

Q ss_pred             CCCCeEEEeccCCCCCCCCCceeEEEeccccccCC---hHHHHHHHHHhccCCcEEE
Q 024162           34 CDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        34 ~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~---~~~~L~ei~RvLKPGG~l~   87 (271)
                      .+.+|+.++++++++..+. .+|+|+|-..-....   .++.|....|.|||||.++
T Consensus       239 w~~~V~vi~~d~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  239 WGDKVTVIHGDMREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             TTTTEEEEES-TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             CCCeEEEEeCcccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            4467999999999998765 999999943222221   2678888999999999886

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=90.52  E-value=0.52  Score=45.18  Aligned_cols=58  Identities=14%  Similarity=0.229  Sum_probs=49.7

Q ss_pred             CCeEEEeccCCCCC--CCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCC
Q 024162           36 PQIITQASSLSQLP--VESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        36 ~~v~~~~~d~e~lp--~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .+|.++.+++++.-  .++++||.++.+-..-|+.+   .+.+++|.|.++|||++++.....
T Consensus       275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~  337 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV  337 (380)
T ss_pred             CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence            57888889887652  57899999999888888876   788999999999999999998764

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=90.49  E-value=0.3  Score=43.43  Aligned_cols=56  Identities=16%  Similarity=0.280  Sum_probs=40.5

Q ss_pred             CeEEEeccCCCC--CCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           37 QIITQASSLSQL--PVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        37 ~v~~~~~d~e~l--p~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      +|....+.-++.  .+++.+||.|+.-.-..+..+ ..+.+.+.|+|||+|.|.+....
T Consensus       150 nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~  208 (271)
T KOG1709|consen  150 NVIILEGRWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGL  208 (271)
T ss_pred             ceEEEecchHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence            455666666543  277999999997443233334 78889999999999999887654

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=90.25  E-value=1.3  Score=41.12  Aligned_cols=70  Identities=24%  Similarity=0.300  Sum_probs=45.8

Q ss_pred             HHHHHHHHHhCchhhhcCCCCe-EEEeccCCCCCCCCCceeEEEeccccccCCh------HHHHHHHHHhccCCcEEEEE
Q 024162           17 SAVLNAIRDLGDEAVEQCDPQI-ITQASSLSQLPVESFSIDTVLSISSSHELPG------DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        17 ~~mv~~ar~~~~~~~~~~~~~v-~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~------~~~L~ei~RvLKPGG~l~i~   89 (271)
                      ...++.+|+....    ++... .+..+++ ..+..+ +||+|+++-.+|.=..      ++++.+..+.|++||.|.|.
T Consensus       192 ~~Av~~ar~Nl~~----N~~~~~~v~~s~~-~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iV  265 (300)
T COG2813         192 ARAVESARKNLAA----NGVENTEVWASNL-YEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV  265 (300)
T ss_pred             HHHHHHHHHhHHH----cCCCccEEEEecc-cccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence            4456777765321    11221 3334443 334445 9999999887774322      58999999999999999988


Q ss_pred             ecC
Q 024162           90 KKL   92 (271)
Q Consensus        90 ~~~   92 (271)
                      -..
T Consensus       266 an~  268 (300)
T COG2813         266 ANR  268 (300)
T ss_pred             EcC
Confidence            763

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=90.21  E-value=1.3  Score=39.29  Aligned_cols=71  Identities=15%  Similarity=0.119  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-C-----CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-P-----VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p-----~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i   88 (271)
                      .+.+++.|++.....  ....+|.++.+++.+. +     .+..+||+|+.-..-   +. ...+.++.+.|+|||.+++
T Consensus       102 d~~~~~~A~~n~~~~--gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        102 DKEAYEVGLEFIKKA--GVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             CHHHHHHHHHHHHHc--CCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEE
Confidence            456777777763211  1224688899988653 2     124689999884321   22 6788999999999999887


Q ss_pred             Eec
Q 024162           89 YKK   91 (271)
Q Consensus        89 ~~~   91 (271)
                      -+.
T Consensus       177 dn~  179 (234)
T PLN02781        177 DNT  179 (234)
T ss_pred             EcC
Confidence            653

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=90.10  E-value=0.81  Score=42.08  Aligned_cols=76  Identities=18%  Similarity=0.164  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHhCchhh-hcCCCCeEEEeccCCCC-CCCCCceeEEEeccccc-----cCChHHHHHHHHHhccCCcEEEE
Q 024162           16 VSAVLNAIRDLGDEAV-EQCDPQIITQASSLSQL-PVESFSIDTVLSISSSH-----ELPGDQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~-~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~l~-----~~~~~~~L~ei~RvLKPGG~l~i   88 (271)
                      -+.+++++|+....-. ...++++..+.+|.-+. .-....||+|+.-..-.     .+....+++.++|.|+++|.++.
T Consensus       109 D~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~  188 (282)
T COG0421         109 DPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVA  188 (282)
T ss_pred             CHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEE
Confidence            5778999999742211 12257788888887544 22233899999844322     22248999999999999999999


Q ss_pred             Eec
Q 024162           89 YKK   91 (271)
Q Consensus        89 ~~~   91 (271)
                      +..
T Consensus       189 q~~  191 (282)
T COG0421         189 QAG  191 (282)
T ss_pred             ecC
Confidence            943

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=90.05  E-value=3.7  Score=35.55  Aligned_cols=87  Identities=15%  Similarity=0.066  Sum_probs=55.6

Q ss_pred             HHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCc
Q 024162           17 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDK   96 (271)
Q Consensus        17 ~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~   96 (271)
                      +++++.+++....   -.-.++..+.+++-..--...+||.|+..-.   -.-+.+|+.+...|||||++++.-...   
T Consensus        68 ~~a~~~~~~N~~~---fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg---~~i~~ile~~~~~l~~ggrlV~naitl---  138 (187)
T COG2242          68 EEALELIERNAAR---FGVDNLEVVEGDAPEALPDLPSPDAIFIGGG---GNIEEILEAAWERLKPGGRLVANAITL---  138 (187)
T ss_pred             HHHHHHHHHHHHH---hCCCcEEEEeccchHhhcCCCCCCEEEECCC---CCHHHHHHHHHHHcCcCCeEEEEeecH---
Confidence            3455555554311   1236788888888644223338999998654   223789999999999999999876542   


Q ss_pred             ccHHHHHHHHHHHHHHcCCc
Q 024162           97 GDVDKAISALEGKLLLAGFL  116 (271)
Q Consensus        97 ~e~~~~~~~l~~~l~laGF~  116 (271)
                          +....+...+...||.
T Consensus       139 ----E~~~~a~~~~~~~g~~  154 (187)
T COG2242         139 ----ETLAKALEALEQLGGR  154 (187)
T ss_pred             ----HHHHHHHHHHHHcCCc
Confidence                1122444567777774

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=89.93  E-value=0.6  Score=39.77  Aligned_cols=72  Identities=22%  Similarity=0.280  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccccc-CC------h--HHHHHHHHHhccCCcEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE-LP------G--DQLLEEISRVLKPGGTI   86 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~-~~------~--~~~L~ei~RvLKPGG~l   86 (271)
                      ...+++.+++.....  .....|.+.+.|+.++++.++++|+|++...+-. +.      .  ..+++++.|+|++ ..+
T Consensus        70 ~~~~v~~a~~N~~~a--g~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v  146 (179)
T PF01170_consen   70 DPKAVRGARENLKAA--GVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAV  146 (179)
T ss_dssp             SHHHHHHHHHHHHHT--T-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEE
T ss_pred             CHHHHHHHHHHHHhc--ccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEE
Confidence            456666676653211  1223588999999999988899999999654321 11      1  5678899999999 444


Q ss_pred             EEEe
Q 024162           87 LIYK   90 (271)
Q Consensus        87 ~i~~   90 (271)
                      ++..
T Consensus       147 ~l~~  150 (179)
T PF01170_consen  147 FLTT  150 (179)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=88.72  E-value=2.1  Score=36.80  Aligned_cols=53  Identities=32%  Similarity=0.432  Sum_probs=40.7

Q ss_pred             CCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162           36 PQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++..+.+++++ +....+||+|++-.+.   +-..++.-..+.|++||++++.-..
T Consensus        98 ~nv~v~~~R~E~-~~~~~~fd~v~aRAv~---~l~~l~~~~~~~l~~~G~~l~~KG~  150 (184)
T PF02527_consen   98 SNVEVINGRAEE-PEYRESFDVVTARAVA---PLDKLLELARPLLKPGGRLLAYKGP  150 (184)
T ss_dssp             SSEEEEES-HHH-TTTTT-EEEEEEESSS---SHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred             CCEEEEEeeecc-cccCCCccEEEeehhc---CHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            458899999998 6668899999996532   2267788889999999999988754

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=88.30  E-value=0.93  Score=40.22  Aligned_cols=73  Identities=23%  Similarity=0.176  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEec-cCC-CCC-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQAS-SLS-QLP-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~-d~e-~lp-~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      -+++.+.|++.-..+  ....+|..+.+ +.- .+. +..++||+|+.=..   =.+ +.++..+.+.|+|||.+++-+.
T Consensus        93 ~~e~~~~A~~n~~~a--g~~~~i~~~~~gdal~~l~~~~~~~fDliFIDad---K~~yp~~le~~~~lLr~GGliv~DNv  167 (219)
T COG4122          93 DEERAEIARENLAEA--GVDDRIELLLGGDALDVLSRLLDGSFDLVFIDAD---KADYPEYLERALPLLRPGGLIVADNV  167 (219)
T ss_pred             CHHHHHHHHHHHHHc--CCcceEEEEecCcHHHHHHhccCCCccEEEEeCC---hhhCHHHHHHHHHHhCCCcEEEEeec
Confidence            567788888763221  12234666663 442 222 45789999998431   122 7899999999999999998775


Q ss_pred             CC
Q 024162           92 LT   93 (271)
Q Consensus        92 ~~   93 (271)
                      ..
T Consensus       168 l~  169 (219)
T COG4122         168 LF  169 (219)
T ss_pred             cc
Confidence            43

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.15  E-value=1.8  Score=38.36  Aligned_cols=74  Identities=18%  Similarity=0.186  Sum_probs=52.6

Q ss_pred             cccHHHHHHHHHHhCchhh-------hcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcE
Q 024162           13 ILPVSAVLNAIRDLGDEAV-------EQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGT   85 (271)
Q Consensus        13 ~~~s~~mv~~ar~~~~~~~-------~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~   85 (271)
                      +...+++++.+++....-.       .-....+.++.+|....--+.+.||.|+.-...     ++..+++...|+|||+
T Consensus       114 IEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa-----~~~pq~l~dqL~~gGr  188 (237)
T KOG1661|consen  114 IEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYDAIHVGAAA-----SELPQELLDQLKPGGR  188 (237)
T ss_pred             hhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcceEEEccCc-----cccHHHHHHhhccCCe
Confidence            3446777777777521111       123346778899998887788899999986433     3456889999999999


Q ss_pred             EEEEec
Q 024162           86 ILIYKK   91 (271)
Q Consensus        86 l~i~~~   91 (271)
                      +++-..
T Consensus       189 llip~~  194 (237)
T KOG1661|consen  189 LLIPVG  194 (237)
T ss_pred             EEEeec
Confidence            998654

>PHA03412 putative methyltransferase; Provisional

Probab=87.71  E-value=2.1  Score=38.52  Aligned_cols=61  Identities=10%  Similarity=0.063  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccC--------C-----hHHHHHHHHHhccC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL--------P-----GDQLLEEISRVLKP   82 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~--------~-----~~~~L~ei~RvLKP   82 (271)
                      .+.+++++++..        ..+.++.+|+...++ +.+||+|+++-.++-.        +     ...++....|+++|
T Consensus        85 D~~Al~~Ar~n~--------~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~  155 (241)
T PHA03412         85 NHTYYKLGKRIV--------PEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQ  155 (241)
T ss_pred             CHHHHHHHHhhc--------cCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCC
Confidence            455677777543        346788899877665 5689999996543211        1     15578888886677


Q ss_pred             CcE
Q 024162           83 GGT   85 (271)
Q Consensus        83 GG~   85 (271)
                      |+.
T Consensus       156 G~~  158 (241)
T PHA03412        156 GTF  158 (241)
T ss_pred             CEE
Confidence            664

>PLN02672 methionine S-methyltransferase

Probab=86.65  E-value=4.1  Score=44.17  Aligned_cols=78  Identities=17%  Similarity=0.103  Sum_probs=51.5

Q ss_pred             CeEEEeccCCCCCCCC--CceeEEEecccc---------------c------c-----C--------Ch-----HHHHHH
Q 024162           37 QIITQASSLSQLPVES--FSIDTVLSISSS---------------H------E-----L--------PG-----DQLLEE   75 (271)
Q Consensus        37 ~v~~~~~d~e~lp~~~--~sfD~V~s~~~l---------------~------~-----~--------~~-----~~~L~e   75 (271)
                      +|.++++|+.+.. ..  ..||+|+++-..               +      |     .        .+     ..++.+
T Consensus       185 rV~f~~sDl~~~~-~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~  263 (1082)
T PLN02672        185 RVEFYESDLLGYC-RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEE  263 (1082)
T ss_pred             cEEEEECchhhhc-cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHH
Confidence            6899999986543 22  269999996320               0      0     0        11     456778


Q ss_pred             HHHhccCCcEEEEEecCCCCcccHHHHHHHHH-HHHHHcCCcchhhhhh
Q 024162           76 ISRVLKPGGTILIYKKLTSDKGDVDKAISALE-GKLLLAGFLDAQRIQL  123 (271)
Q Consensus        76 i~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~-~~l~laGF~~v~~~~~  123 (271)
                      ..++|+|||.+++.....     ..+   .+. +.+...||..+..++.
T Consensus       264 a~~~L~pgG~l~lEiG~~-----q~~---~v~~~l~~~~gf~~~~~~~~  304 (1082)
T PLN02672        264 GISVIKPMGIMIFNMGGR-----PGQ---AVCERLFERRGFRITKLWQT  304 (1082)
T ss_pred             HHHhccCCCEEEEEECcc-----HHH---HHHHHHHHHCCCCeeEEeee
Confidence            888999999998776541     222   444 4567789998777765

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=85.36  E-value=7.4  Score=37.47  Aligned_cols=76  Identities=13%  Similarity=0.108  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--C--CCCceeEEEeccccccC---------Ch-HHHHHHHHHhcc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--V--ESFSIDTVLSISSSHEL---------PG-DQLLEEISRVLK   81 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~--~~~sfD~V~s~~~l~~~---------~~-~~~L~ei~RvLK   81 (271)
                      ++.+++.+++..... .....++.++++|+.+.-  +  ...+||+|++.-....-         .+ ..++....++|+
T Consensus       252 s~~al~~a~~N~~~N-gl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk  330 (396)
T PRK15128        252 SQEALDIARQNVELN-KLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLN  330 (396)
T ss_pred             CHHHHHHHHHHHHHc-CCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcC
Confidence            567777777653211 001136889999986541  2  24589999985432110         11 344556789999


Q ss_pred             CCcEEEEEecC
Q 024162           82 PGGTILIYKKL   92 (271)
Q Consensus        82 PGG~l~i~~~~   92 (271)
                      |||.|++..-+
T Consensus       331 ~gG~lv~~scs  341 (396)
T PRK15128        331 PGGILLTFSCS  341 (396)
T ss_pred             CCeEEEEEeCC
Confidence            99999987644

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=85.26  E-value=3  Score=40.51  Aligned_cols=71  Identities=14%  Similarity=0.187  Sum_probs=46.9

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCC----CCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ----LPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~----lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      .++.|++.+++.....   ...++.++++|+.+    +++.+++||+|++.-...-  ....+..+.+ |+|++.++++.
T Consensus       327 ~s~~al~~A~~n~~~~---~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g--~~~~~~~l~~-~~~~~ivyvSC  400 (443)
T PRK13168        327 GVEAMVERARENARRN---GLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG--AAEVMQALAK-LGPKRIVYVSC  400 (443)
T ss_pred             CCHHHHHHHHHHHHHc---CCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC--hHHHHHHHHh-cCCCeEEEEEe
Confidence            3678888888764211   11358899999864    3455678999998543222  2455665555 69999999986


Q ss_pred             c
Q 024162           91 K   91 (271)
Q Consensus        91 ~   91 (271)
                      .
T Consensus       401 n  401 (443)
T PRK13168        401 N  401 (443)
T ss_pred             C
Confidence            4

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=84.83  E-value=2.9  Score=40.22  Aligned_cols=73  Identities=18%  Similarity=0.196  Sum_probs=48.0

Q ss_pred             CCCCceeEEEeccccccCCh-HH--------------------------------------HHHHHHHhccCCcEEEEEe
Q 024162           50 VESFSIDTVLSISSSHELPG-DQ--------------------------------------LLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        50 ~~~~sfD~V~s~~~l~~~~~-~~--------------------------------------~L~ei~RvLKPGG~l~i~~   90 (271)
                      ||.+|.+++++++++||+.. +.                                      +|+-=++-|.|||+++++.
T Consensus       158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~  237 (386)
T PLN02668        158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC  237 (386)
T ss_pred             cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence            78999999999999999863 11                                      1222235688999999998


Q ss_pred             cCCCCc----cc-HHHH----HHHHHHHHHHcCCcchhhhh
Q 024162           91 KLTSDK----GD-VDKA----ISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus        91 ~~~~~~----~e-~~~~----~~~l~~~l~laGF~~v~~~~  122 (271)
                      .+....    .+ ....    .+.....+..-|.++.+.+.
T Consensus       238 ~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~d  278 (386)
T PLN02668        238 LGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRD  278 (386)
T ss_pred             ecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence            765311    11 1122    23344567788988876654

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.53  E-value=1.7  Score=37.14  Aligned_cols=104  Identities=14%  Similarity=0.157  Sum_probs=60.6

Q ss_pred             EEEEecCCcccHHHHHHHHHHhCchhhhcCCC-CeEEEeccCCCCCCCCCceeEEEeccccccCCh--HHHHHHHHHhcc
Q 024162            5 VLALSEDKILPVSAVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSSHELPG--DQLLEEISRVLK   81 (271)
Q Consensus         5 vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~-~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~--~~~L~ei~RvLK   81 (271)
                      -..+||+-...++.+..+.-......  .... .+.|. -.-.........||+|++.--+ ++..  .++..-|.+.|+
T Consensus        56 ~v~ltdgne~svrnv~ki~~~n~~s~--~tsc~vlrw~-~~~aqsq~eq~tFDiIlaADCl-FfdE~h~sLvdtIk~lL~  131 (201)
T KOG3201|consen   56 SVWLTDGNEESVRNVEKIRNSNMASS--LTSCCVLRWL-IWGAQSQQEQHTFDIILAADCL-FFDEHHESLVDTIKSLLR  131 (201)
T ss_pred             eEEEecCCHHHHHHHHHHHhcccccc--cceehhhHHH-HhhhHHHHhhCcccEEEeccch-hHHHHHHHHHHHHHHHhC
Confidence            34568887777777655544331000  0001 12221 1112233446699999985432 1222  788899999999


Q ss_pred             CCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcch
Q 024162           82 PGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  118 (271)
Q Consensus        82 PGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v  118 (271)
                      |.|+-++..+..+      ++.+.+..+....||...
T Consensus       132 p~g~Al~fsPRRg------~sL~kF~de~~~~gf~v~  162 (201)
T KOG3201|consen  132 PSGRALLFSPRRG------QSLQKFLDEVGTVGFTVC  162 (201)
T ss_pred             cccceeEecCccc------chHHHHHHHHHhceeEEE
Confidence            9999887766532      233466677788888753

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=84.53  E-value=3.6  Score=39.01  Aligned_cols=82  Identities=17%  Similarity=0.245  Sum_probs=53.6

Q ss_pred             EEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC---CCCCceeEEEec--c----cc------cc---
Q 024162            5 VLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP---VESFSIDTVLSI--S----SS------HE---   66 (271)
Q Consensus         5 vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp---~~~~sfD~V~s~--~----~l------~~---   66 (271)
                      ++++.|.+..-...|.+.++..+   +    .++.....+...++   ...+.||.|+.=  +    ++      -|   
T Consensus       184 iV~A~D~~~~Rl~~l~~nl~RlG---~----~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~  256 (355)
T COG0144         184 IVVAVDVSPKRLKRLRENLKRLG---V----RNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRT  256 (355)
T ss_pred             eEEEEcCCHHHHHHHHHHHHHcC---C----CceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCC
Confidence            34788888888888888888776   2    33445555554443   223359999971  1    11      01   


Q ss_pred             ------CCh--HHHHHHHHHhccCCcEEEEEecCC
Q 024162           67 ------LPG--DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        67 ------~~~--~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                            +..  .++|....++|||||+|+.++=+-
T Consensus       257 ~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~  291 (355)
T COG0144         257 PEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL  291 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence                  111  467888999999999999998653

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=84.50  E-value=3.3  Score=34.93  Aligned_cols=85  Identities=21%  Similarity=0.284  Sum_probs=43.3

Q ss_pred             ccEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-C---CCCCCceeEEEeccccccCCh-HHHHHHHH
Q 024162            3 SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-L---PVESFSIDTVLSISSSHELPG-DQLLEEIS   77 (271)
Q Consensus         3 ~~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-l---p~~~~sfD~V~s~~~l~~~~~-~~~L~ei~   77 (271)
                      ..-+++||... ..+.+..-++....    ....++....-+-.+ +   .+....||+|+..-.++.-.. +.++.-+.
T Consensus        69 ~~~Vv~TD~~~-~l~~l~~Ni~~N~~----~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~  143 (173)
T PF10294_consen   69 AARVVLTDYNE-VLELLRRNIELNGS----LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLK  143 (173)
T ss_dssp             -SEEEEEE-S--HHHHHHHHHHTT------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHH
T ss_pred             CceEEEeccch-hhHHHHHHHHhccc----cccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHH
Confidence            34567788765 44433333332210    112344444444322 1   134568999999877665444 88999999


Q ss_pred             HhccCCcEEEEEecC
Q 024162           78 RVLKPGGTILIYKKL   92 (271)
Q Consensus        78 RvLKPGG~l~i~~~~   92 (271)
                      ++|+|+|.+++....
T Consensus       144 ~ll~~~~~vl~~~~~  158 (173)
T PF10294_consen  144 RLLKPNGKVLLAYKR  158 (173)
T ss_dssp             HHBTT-TTEEEEEE-
T ss_pred             HHhCCCCEEEEEeCE
Confidence            999999997776644

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=84.12  E-value=3.3  Score=42.82  Aligned_cols=76  Identities=13%  Similarity=0.087  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-CCCCCceeEEEecccc---c----c----CCh-HHHHHHHHHhccC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-PVESFSIDTVLSISSS---H----E----LPG-DQLLEEISRVLKP   82 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~l---~----~----~~~-~~~L~ei~RvLKP   82 (271)
                      ++.+++.+++...... ....++.++++|+.+. .-...+||+|++.-..   .    .    ..+ ..++..+.++|+|
T Consensus       570 s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~  648 (702)
T PRK11783        570 SNTYLEWAERNFALNG-LSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP  648 (702)
T ss_pred             CHHHHHHHHHHHHHhC-CCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCC
Confidence            6677777777532110 0113688999997542 1114689999984321   0    1    112 5678889999999


Q ss_pred             CcEEEEEecC
Q 024162           83 GGTILIYKKL   92 (271)
Q Consensus        83 GG~l~i~~~~   92 (271)
                      ||.|++....
T Consensus       649 gG~l~~~~~~  658 (702)
T PRK11783        649 GGTLYFSNNK  658 (702)
T ss_pred             CCEEEEEeCC
Confidence            9999887654

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=83.86  E-value=3.3  Score=38.06  Aligned_cols=56  Identities=13%  Similarity=0.316  Sum_probs=36.3

Q ss_pred             CCCeEEEeccCCCCCCCCCceeEEEeccccc-cC-ChHHHHHHHHHhccCCcEEEEEe
Q 024162           35 DPQIITQASSLSQLPVESFSIDTVLSISSSH-EL-PGDQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        35 ~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~-~~-~~~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ...+.|+.+++...+.+-..||+|+...... -- +-.++|.++.+.++||..+++..
T Consensus       173 ~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  173 SKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             -SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             cCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence            4678999999988877777999998644221 11 23899999999999999999884

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=83.81  E-value=1.8  Score=44.22  Aligned_cols=70  Identities=19%  Similarity=0.250  Sum_probs=49.0

Q ss_pred             CeEEEeccCCC-CCCCCCceeEEEe-ccccccCCh---HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHH
Q 024162           37 QIITQASSLSQ-LPVESFSIDTVLS-ISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLL  111 (271)
Q Consensus        37 ~v~~~~~d~e~-lp~~~~sfD~V~s-~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~  111 (271)
                      .+....+|+.. ++--...||+|+. -++...-++   .+++++|+|.++|||+|.-.+..           ..+++.|.
T Consensus       148 ~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~a-----------~~vr~~l~  216 (662)
T PRK01747        148 TLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTSA-----------GFVRRGLQ  216 (662)
T ss_pred             EEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeehH-----------HHHHHHHH
Confidence            44456677753 3322356999997 344333343   89999999999999999966533           26778899


Q ss_pred             HcCCcc
Q 024162          112 LAGFLD  117 (271)
Q Consensus       112 laGF~~  117 (271)
                      .+||..
T Consensus       217 ~~GF~v  222 (662)
T PRK01747        217 EAGFTV  222 (662)
T ss_pred             HcCCee
Confidence            999974

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=83.60  E-value=2  Score=40.23  Aligned_cols=82  Identities=17%  Similarity=0.193  Sum_probs=51.1

Q ss_pred             EEEeccCCCC---CCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC-------CC--cccHHHHHHH
Q 024162           39 ITQASSLSQL---PVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT-------SD--KGDVDKAISA  105 (271)
Q Consensus        39 ~~~~~d~e~l---p~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~-------~~--~~e~~~~~~~  105 (271)
                      +...||..+.   +-..++||+|+..+-+---++ -+.|..|..+|||||.++=.-+..       +.  ...+.-+.++
T Consensus       241 sicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~ed  320 (369)
T KOG2798|consen  241 SICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLED  320 (369)
T ss_pred             cccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHH
Confidence            3344555433   223357999998754444445 788999999999999987543211       10  1122234567


Q ss_pred             HHHHHHHcCCcchhh
Q 024162          106 LEGKLLLAGFLDAQR  120 (271)
Q Consensus       106 l~~~l~laGF~~v~~  120 (271)
                      +.+....-||..+..
T Consensus       321 l~~v~~~~GF~~~ke  335 (369)
T KOG2798|consen  321 LKRVASHRGFEVEKE  335 (369)
T ss_pred             HHHHHHhcCcEEEEe
Confidence            777788899987544

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=83.59  E-value=3.3  Score=35.52  Aligned_cols=71  Identities=17%  Similarity=0.156  Sum_probs=53.8

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-----CCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-----VESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTI   86 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-----~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l   86 (271)
                      -+..++.+..++.        +.+.++.+|+..+.     +...-||.|+|...+..++.   -..|+++...|.+||.|
T Consensus        81 ~~~dF~~~L~~~~--------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~l  152 (194)
T COG3963          81 YSPDFVCHLNQLY--------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPL  152 (194)
T ss_pred             eCHHHHHHHHHhC--------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeE
Confidence            3667777777775        22345667776654     66788999999887777764   67899999999999999


Q ss_pred             EEEecCC
Q 024162           87 LIYKKLT   93 (271)
Q Consensus        87 ~i~~~~~   93 (271)
                      +-.+.++
T Consensus       153 vqftYgp  159 (194)
T COG3963         153 VQFTYGP  159 (194)
T ss_pred             EEEEecC
Confidence            9888763

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=82.55  E-value=1.8  Score=40.83  Aligned_cols=69  Identities=19%  Similarity=0.199  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEE
Q 024162           17 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        17 ~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~----~~~L~ei~RvLKPGG~l~   87 (271)
                      +.|.+.+++.....  .....|+.+++.++++.+|...+|+|++-+.-+++.-    ..+|-.=-+-|+|||.++
T Consensus        92 S~ia~~a~~iv~~N--~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen   92 SSIADFARKIVKDN--GLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hHHHHHHHHHHHhc--CccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            44556666642111  1124588999999998888899999999765444432    555555668999999886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	271
2ld4_A	176	Solution Structure Of The N-Terminal Domain Of Huma		7e-05
2yui_A	182	Solution Structure Of The N-Terminal Domain In Huma		2e-04

>pdb|2LD4|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Anamorsin Length = 176

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 18/113 (15%)
Query: 54  SIDTVLS--ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGK 109
           S D +LS  +  S  L   ++L EI+R+L+PGG + + + + +  D     K  S L   
Sbjct: 63  SFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSA 122
Query: 110 LLLAGFLDAQRIQLKSVVPAEVVS--------------FGVKGKKPTWKIGSS 148
           L L+G ++ + +Q + + P EV S                + GKKP +++GSS
Sbjct: 123 LTLSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSS 175

>pdb|2YUI|A Chain A, Solution Structure Of The N-Terminal Domain In Human Cytokine-Induced Apoptosis Inhibitor Anamorsin Length = 182

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 18/112 (16%)
Query: 54  SIDTVLS--ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGK 109
           S D +LS  +  S  L   ++L EI+R+L+PGG + + + + +  D     K  S L   
Sbjct: 66  SFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSA 125
Query: 110 LLLAGFLDAQRIQLKSVVPAEVVS--------------FGVKGKKPTWKIGS 147
           L L+G ++ + +Q + + P EV S                + GKKP +++GS
Sbjct: 126 LTLSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGS 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	8e-14
3i9f_A	170	Putative type 11 methyltransferase; structural gen	3e-09
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	1e-08
3f4k_A	257	Putative methyltransferase; structural genomics, P	5e-07
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	7e-07
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	2e-06
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	3e-06
3ege_A	261	Putative methyltransferase from antibiotic biosyn	6e-06
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	8e-06
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	9e-06
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	2e-05
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	2e-05
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-05
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	2e-05
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	1e-04
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	1e-04
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	1e-04
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-04
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	2e-04
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	2e-04
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	2e-04
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	2e-04
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	3e-04
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	3e-04
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	4e-04
1xxl_A	239	YCGJ protein; structural genomics, protein structu	4e-04
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	5e-04
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	6e-04
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	6e-04
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	7e-04
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	7e-04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	9e-04

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A Length = 176

 Score = 67.2 bits (163), Expect = 8e-14
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 18/128 (14%)

Query: 39  ITQASSLSQLPVESFSIDTVLS--ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD- 95
           +     L Q   +  S D +LS  +  S  L   ++L EI+R+L+PGG + + + + +  
Sbjct: 48  VENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAV 107

Query: 96  -KGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAE--------------VVSFGVKGKK 140
                 K  S L   L L+G ++ + +Q + + P E              ++   + GKK
Sbjct: 108 DNNSKVKTASKLCSALTLSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKK 167

Query: 141 PTWKIGSS 148
           P +++GSS
Sbjct: 168 PNFEVGSS 175

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 16/95 (16%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 25  DLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPG 83
           D+   A+++   +  +  +      +   S+D +L  +S H++     ++ E+ R+LK  
Sbjct: 46  DINVIALKEVKEKFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDD 105

Query: 84  GTILI--YKKLTSDKGD-VDKAISALEGKLLLAGF 115
           G ++I  ++K  +  G  +   +   +     + F
Sbjct: 106 GRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFSNF 140

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 23  IRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLK 81
           +    ++  +     +    S  +++P+   ++D +    + HEL    + LEE+ RV K
Sbjct: 75  VNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAK 134

Query: 82  PGGTILI--YKKLTSDKG-DVDKAISALEGKLLL--AGFLDAQ 119
           P   + I  +KK   DKG   ++  S  E  L+L  AG    +
Sbjct: 135 PFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGR 177

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 25  DLGDEAVEQ---------CDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEE 75
           DL  + +E          C  ++     S+  LP ++  +D + S  + + +  ++ + E
Sbjct: 76  DLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNE 135

Query: 76  ISRVLKPGGTILIY 89
            S+ LK GG I + 
Sbjct: 136 WSKYLKKGGFIAVS 149

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 48.1 bits (114), Expect = 7e-07
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 14/88 (15%)

Query: 28  DEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTIL 87
           D  V  CD         ++Q+P+E  S+D  +   S         LEE +RVLKPGG + 
Sbjct: 98  DPRVTVCD---------MAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLK 148

Query: 88  IYKKLTSDKGDVDKAISALEGKLLLAGF 115
           +  +++S   DV   + A+       GF
Sbjct: 149 VA-EVSSRFEDVRTFLRAVT----KLGF 171

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 11/55 (20%), Positives = 25/55 (45%)

Query: 35  DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 89
             ++     S+  LP  +  +D + S  + + +  ++ L E  + LK GG + + 
Sbjct: 95  QNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVS 149

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 29  EAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGD---QLLEEISRVLKPGGT 85
               + + ++      + +LP +  S+  V S  +   +  +   + ++EI RVLKPGG 
Sbjct: 64  NFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGL 123

Query: 86  ILIY 89
             I 
Sbjct: 124 ACIN 127

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 45.7 bits (108), Expect = 6e-06
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 25  DLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLK 81
           +      +Q    PQ+         L +   S+D V+SI + H     ++  +E+ R+++
Sbjct: 63  EPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR 122

Query: 82  PGGTILIY 89
            G  +L+ 
Sbjct: 123 DGTIVLLT 130

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 44.9 bits (106), Expect = 8e-06
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 47  QLPVESFSIDTVLSISSSHELPGD---QLLEEISRVLKPGGTILIY 89
           +L  E  + D V+ I S          Q+ +E+ RVLKP G  ++Y
Sbjct: 96  KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY 141

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 44.4 bits (105), Expect = 9e-06
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 25  DLGDEAVEQC---DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQL---LEEISR 78
           +     VE      P +     +++ L         +L+  S   +   +L   L  +  
Sbjct: 70  EPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRM 129

Query: 79  VLKPGGTILI 88
            ++ GG +L+
Sbjct: 130 AVEDGGGLLM 139

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 47  QLPVESFSIDTVLSISSSHELPGDQ---LLEEISRVLKPGGTILIYKKLTSDKGDVDKAI 103
              V + SIDT++S  + H L  D+    + + S++L  GG I+    + +D+   DK +
Sbjct: 100 SFEVPT-SIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTV 158

Query: 104 SALEGK 109
            A + +
Sbjct: 159 EAAKQR 164

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 47  QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 88
            LP E+   + +++I+S        + L EI RVLK  G   I
Sbjct: 109 SLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACI 151

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 48  LPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIY 89
           +P+E    D ++S  S            EI R+LK GG   I 
Sbjct: 105 IPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIG 147

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 47  QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 88
            LP++  S D  L +++   +   ++ L+E  R+LK GG +++
Sbjct: 95  NLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIV 137

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 10/47 (21%), Positives = 19/47 (40%)

Query: 43  SSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 89
             L    V+   ID + ++  +H    ++        L+  GTI I+
Sbjct: 102 KFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIW 148

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 4/64 (6%)

Query: 28  DEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQL---LEEISRVLKPGG 84
            EA       +  +   L     +    D V        +P D+     E +   + PGG
Sbjct: 82  AEAGRHGLDNVEFRQQDLFDWTPDR-QWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGG 140

Query: 85  TILI 88
            +  
Sbjct: 141 VVEF 144

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 47  QLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAI 103
                  + D + S  +   L     ++L ++  + LKP GT+LI     ++K + D   
Sbjct: 113 TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEF 172

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 28  DEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGT 85
            EA  +   P +  +  ++  + +E  + + VLS  + H +   D + +++   LK  G+
Sbjct: 81  TEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGS 140

Query: 86  ILI 88
            + 
Sbjct: 141 FIF 143

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 30  AVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 88
             +     +    +++  LP E  S D +        L   ++ L+ + +VLKPGGTI +
Sbjct: 81  TEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITV 140

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 47  QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 88
            +P+   S+  V+ +   H +P   ++L E  RVLKPGG +L 
Sbjct: 97  AIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLE 139

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 47  QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIY 89
            LP E  S D V ++ S H +P   + L E++RVL+PGGT+ I 
Sbjct: 122 DLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIA 165

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 35  DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGD---QLLEEISRVLKPGGTILIYKK 91
           + ++    +  S+   E    D V+S  S H L  +   +L +    +LK  G  +    
Sbjct: 91  NLKVKYIEADYSKYDFEE-KYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADL 149

Query: 92  LTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 122
           +  +   ++     +  + +    L  + I 
Sbjct: 150 VHGETAFIENLNKTIWRQYVENSGLTEEEIA 180

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 16  VSAV---LNAIRDLGDEAVEQCDPQIITQASSLSQLPV-ESFSIDTVLSISSSHELPGD- 70
           V A      +I ++      +    + T+   L+ L     +  D +LS      L    
Sbjct: 57  VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY--DFILSTVVLMFLEAKT 114

Query: 71  --QLLEEISRVLKPGGTILIYKKL 92
              L+  + R  KPGG  LI   +
Sbjct: 115 IPGLIANMQRCTKPGGYNLIVAAM 138

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 7/71 (9%)

Query: 25  DLGDEAVEQC---DPQIITQASSLSQLPVESFSIDTVLSISSS-HELPGDQL---LEEIS 77
           DL    ++      P+       LS   +     D ++S  +    L  D     L  I 
Sbjct: 75  DLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIH 134

Query: 78  RVLKPGGTILI 88
           R L   G  +I
Sbjct: 135 RALGADGRAVI 145

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 9/67 (13%)

Query: 25  DLGDEAVEQC---DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLK 81
           D+   A++      PQ+    +S  +LP    S+D ++ I +          EE++RV+K
Sbjct: 116 DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA------PCKAEELARVVK 169

Query: 82  PGGTILI 88
           PGG ++ 
Sbjct: 170 PGGWVIT 176

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 47  QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 88
            LP    S D +    ++H      + + E++RVLK  G  L+
Sbjct: 80  SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLL 122

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 39  ITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIY 89
           I   ++     V   S+D V+S    +       L +EI RVL+ GG +   
Sbjct: 151 IENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFS 202

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 47  QLPVESFSIDTVLSISSS-HELPG-DQLLEEISRVLKPGGTILI 88
            LP  S + + VL++      +   D+   EI RVL P G ++ 
Sbjct: 107 DLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA 150

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 47  QLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 89
             P +  ++    +  S+  +    L  E SR LK GG  +  
Sbjct: 178 DTPFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTI 220

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 47  QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 88
            LP    S D VL  ++   +   +++L E  RVL+PGG +++
Sbjct: 88  ALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVV 130

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 30  AVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQ---LLEEISRVLKPGGTI 86
           +    D          +Q+  E    + +   +  H +P ++   L + +  +L   G +
Sbjct: 104 SYRLLD---GLVPEQAAQIHSEIGDAN-IYMRTGFHHIPVEKRELLGQSLRILLGKQGAM 159

Query: 87  LI 88
            +
Sbjct: 160 YL 161

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 39.0 bits (91), Expect = 9e-04
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 47  QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 88
           Q+P        V    ++H  P     + E  RVLK GG +L+
Sbjct: 96  QMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLL 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.63
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.14
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.03
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.0
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.98
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.97
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.96
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.87
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.86
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.85
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.85
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.84
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.83
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.82
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.82
3ocj_A	305	Putative exported protein; structural genomics, PS	98.81
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.8
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.79
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.78
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.78
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.77
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.77
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.76
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.75
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.73
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.73
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.72
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.71
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.7
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.68
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.68
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.68
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.67
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.67
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.65
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.64
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.63
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.62
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.62
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.61
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.61
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.61
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.59
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.57
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.55
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.54
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.54
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.54
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.53
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.52
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.51
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.51
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.5
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.5
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.49
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.48
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.47
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.45
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.44
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.44
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.42
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.41
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.41
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.4
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.39
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.38
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.36
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.35
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.35
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.32
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.32
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.29
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.29
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.29
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.29
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.27
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.27
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.25
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.25
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.24
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.24
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.23
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.23
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.21
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.19
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.18
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.18
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.17
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.17
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.16
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.16
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.15
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.15
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.15
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.13
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.13
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.12
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.11
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.1
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.09
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.08
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.07
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.07
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.05
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.05
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.04
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.04
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.03
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.02
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.98
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.97
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.92
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.92
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.92
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.91
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.9
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.89
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.86
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	97.85
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	97.85
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.85
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.83
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.81
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.8
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.79
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.78
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.78
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.77
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.76
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.76
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.75
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.74
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.73
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.72
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.7
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.69
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	97.68
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.66
2qm3_A	373	Predicted methyltransferase; putative methyltransf	97.6
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	97.6
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.57
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.56
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.55
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	97.54
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.51
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	97.5
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.49
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.49
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	97.49
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.49
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.48
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.45
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.45
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.44
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.44
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.44
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	97.42
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.41
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.4
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.4
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.39
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.39
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	97.37
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	97.37
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	97.34
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.34
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.33
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.28
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.25
2esr_A	177	Methyltransferase; structural genomics, hypothetic	97.22
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.21
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.2
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.16
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.16
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.16
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.13
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.11
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.1
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.08
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	97.07
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	97.06
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.05
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.05
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.99
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	96.97
2km1_A	136	Protein DRE2; yeast, antiapoptotic, protein bindin	96.96
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	96.95
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	96.95
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.94
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	96.93
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	96.92
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	96.92
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	96.91
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	96.9
2o07_A	304	Spermidine synthase; structural genomics, structur	96.88
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.87
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.86
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	96.85
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	96.79
2i7c_A	283	Spermidine synthase; transferase, structural genom	96.77
1ws6_A	171	Methyltransferase; structural genomics, riken stru	96.76
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	96.75
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	96.73
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	96.73
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	96.72
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	96.71
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	96.7
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	96.68
2pt6_A	321	Spermidine synthase; transferase, structural genom	96.65
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	96.65
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	96.63
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	96.57
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	96.53
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.4
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	96.39
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	96.39
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	96.36
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	96.36
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	96.36
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	96.32
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	96.31
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	96.25
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	96.16
2h00_A	254	Methyltransferase 10 domain containing protein; st	96.16
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	96.12
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	96.07
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	96.0
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	95.96
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	95.82
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	95.79
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	95.73
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	95.64
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	95.57
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	95.56
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	95.55
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	95.48
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	95.43
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	95.41
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	95.34
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	95.3
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	95.22
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	95.1
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	95.1
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	95.03
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	94.95
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	94.58
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	94.5
3k6r_A	278	Putative transferase PH0793; structural genomics,	94.22
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	94.08
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	94.04
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	93.87
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.75
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	93.46
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	93.39
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	93.24
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	92.63
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	92.59
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	92.5
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	92.2
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	91.95
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	91.29
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	91.03
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	90.9
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	90.26
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	87.51
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	87.0
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	86.71
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	85.98
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	84.43
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	83.68
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	83.38
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	82.9
3cvo_A	202	Methyltransferase-like protein of unknown functio;	82.52
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	81.65
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	81.37
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	80.44
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	80.05

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.63  E-value=1.1e-15  Score=126.98  Aligned_cols=140  Identities=21%  Similarity=0.352  Sum_probs=102.0

Q ss_pred             ccEEEEecCCcc--cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCC---CCCceeEEEeccccccC-Ch-HHHHHH
Q 024162            3 SAVLALSEDKIL--PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV---ESFSIDTVLSISSSHEL-PG-DQLLEE   75 (271)
Q Consensus         3 ~~vl~~td~~~~--~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~---~~~sfD~V~s~~~l~~~-~~-~~~L~e   75 (271)
                      ..||.++.+...  .++.|++.++++..       .++.+++++++++++   ++++||+|++..++||+ .+ ..+|++
T Consensus        14 ~~vL~~~~g~v~vD~s~~ml~~a~~~~~-------~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~l~~   86 (176)
T 2ld4_A           14 QFVAVVWDKSSPVEALKGLVDKLQALTG-------NEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAE   86 (176)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHHHHHTT-------TTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHHHHHH
T ss_pred             CEEEEecCCceeeeCCHHHHHHHHHhcc-------cCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCHHHHHHH
Confidence            468888888744  48899999998852       137899999999988   89999999999999998 66 999999


Q ss_pred             HHHhccCCcEEEEEecCCCCcc--cHHHHHHHHHHHHHHcCCcchhhhhhcccc--------------CcceeEEEEEee
Q 024162           76 ISRVLKPGGTILIYKKLTSDKG--DVDKAISALEGKLLLAGFLDAQRIQLKSVV--------------PAEVVSFGVKGK  139 (271)
Q Consensus        76 i~RvLKPGG~l~i~~~~~~~~~--e~~~~~~~l~~~l~laGF~~v~~~~~~~~~--------------~~~~~~~~i~a~  139 (271)
                      ++|+|||||+|++..+......  ......+.+...+..+||+.+......++.              .+.+..+.+.++
T Consensus        87 ~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGfi~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~  166 (176)
T 2ld4_A           87 IARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGK  166 (176)
T ss_dssp             HHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTCEEEEEEEEECCCHHHHHHHHHHTCCCCSSEEEEEEEEE
T ss_pred             HHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCCcEeecCcccCCCHHHHHHHHHHhcccCCceEEEEEecc
Confidence            9999999999999764321100  000112467788999999443222111111              122347789999


Q ss_pred             CCCccccccc
Q 024162          140 KPTWKIGSSF  149 (271)
Q Consensus       140 KPs~~~gss~  149 (271)
                      ||+|++|||+
T Consensus       167 Kp~~~~gs~~  176 (176)
T 2ld4_A          167 KPNFEVGSSR  176 (176)
T ss_dssp             CCCSSCCSCC
T ss_pred             CCcccccCCC
Confidence            9999999984

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.14  E-value=2.3e-10  Score=101.93  Aligned_cols=75  Identities=19%  Similarity=0.297  Sum_probs=62.0

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .++.|++.||++....  ....+|.++++|+.++|++  .||+|++.+++|++++   ..+|++++|+|||||+|++.+.
T Consensus       104 ~s~~ml~~A~~~~~~~--~~~~~v~~~~~D~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          104 NSPAMIERCRRHIDAY--KAPTPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             SCHHHHHHHHHHHHTS--CCSSCEEEEESCTTTCCCC--SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHhh--ccCceEEEeeccccccccc--ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence            3789999999884221  2235799999999998875  5999999999999975   4689999999999999999986


Q ss_pred             CC
Q 024162           92 LT   93 (271)
Q Consensus        92 ~~   93 (271)
                      ..
T Consensus       180 ~~  181 (261)
T 4gek_A          180 FS  181 (261)
T ss_dssp             BC
T ss_pred             cC
Confidence            53

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.03  E-value=7.7e-10  Score=93.90  Aligned_cols=119  Identities=18%  Similarity=0.146  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      ++.|++.++++...   ....++.+..+++..+++++++||+|++..+++++.+ ..++++++|+|||||++++.++...
T Consensus        71 s~~~~~~a~~~~~~---~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  147 (219)
T 3dh0_A           71 QEEMVNYAWEKVNK---LGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE  147 (219)
T ss_dssp             CHHHHHHHHHHHHH---HTCTTEEEEECBTTBCSSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             CHHHHHHHHHHHHH---cCCCcEEEEecccccCCCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccc
Confidence            67788888877422   1123689999999999999999999999999999987 8999999999999999999987643


Q ss_pred             Cc---c--cHHHHHHHHHHHHHHcCCcchhhhhhccccCcceeEEEEEeeCCCc
Q 024162           95 DK---G--DVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTW  143 (271)
Q Consensus        95 ~~---~--e~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~~~~~i~a~KPs~  143 (271)
                      ..   .  ...-..+.+...+..+||..++.....+      ..+.+.++||.-
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~------~~~~~~~~k~~~  195 (219)
T 3dh0_A          148 ERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGK------YCFGVYAMIVKQ  195 (219)
T ss_dssp             CCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETT------TEEEEEEECC--
T ss_pred             ccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCC------ceEEEEEEeccc
Confidence            11   0  0001124677788999999876654322      355677777643

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.00  E-value=1.2e-09  Score=95.47  Aligned_cols=75  Identities=21%  Similarity=0.331  Sum_probs=62.9

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.|++.++++...   ....++.+++++++++|+++++||+|++..++||+++ ..+|++++|+|||||+|++.++.
T Consensus        67 ~s~~~l~~a~~~~~~---~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~  142 (260)
T 1vl5_A           67 LTEDILKVARAFIEG---NGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS  142 (260)
T ss_dssp             SCHHHHHHHHHHHHH---TTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHh---cCCCceEEEEecHHhCCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            367888888887421   1224689999999999999999999999999999987 89999999999999999998754

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.98  E-value=3.1e-09  Score=91.20  Aligned_cols=117  Identities=18%  Similarity=0.135  Sum_probs=83.3

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChH---HHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGD---QLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~---~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .++.|++.++++....     .++.++++++..++++ ++||+|++..+++++++.   .++++++|+|||||+|++.++
T Consensus        76 ~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  149 (234)
T 3dtn_A           76 MSEKMLEIAKNRFRGN-----LKVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADL  149 (234)
T ss_dssp             SCHHHHHHHHHHTCSC-----TTEEEEESCTTTCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHhhccC-----CCEEEEeCchhccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            3678999999885221     3789999999999988 899999999999999863   599999999999999999986


Q ss_pred             CCCCcccHH----HH-----------------------------HHHHHHHHHHcCCcchhhhhhccccCcceeEEEEEe
Q 024162           92 LTSDKGDVD----KA-----------------------------ISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKG  138 (271)
Q Consensus        92 ~~~~~~e~~----~~-----------------------------~~~l~~~l~laGF~~v~~~~~~~~~~~~~~~~~i~a  138 (271)
                      .........    ..                             .+.+...|..+||..++....      ......+.+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~------~~~~~~~~~  223 (234)
T 3dtn_A          150 VHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYK------YYQFAVMFG  223 (234)
T ss_dssp             CBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEEEEE------ETTEEEEEE
T ss_pred             cCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcCCCceeeeee------ecceeEEEE
Confidence            543211100    01                             124445788899988876532      122345667


Q ss_pred             eCCCc
Q 024162          139 KKPTW  143 (271)
Q Consensus       139 ~KPs~  143 (271)
                      .||.|
T Consensus       224 ~~~~~  228 (234)
T 3dtn_A          224 RKTEG  228 (234)
T ss_dssp             ECC--
T ss_pred             Eeccc
Confidence            77765

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.97  E-value=3.4e-09  Score=89.15  Aligned_cols=105  Identities=18%  Similarity=0.194  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      ++.|++.++++....  ....++.++++++.++++++++||+|++..+++|+.+ ..++++++|+|||||++++.+....
T Consensus        75 s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  152 (219)
T 3dlc_A           75 SKHMNEIALKNIADA--NLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGN  152 (219)
T ss_dssp             CHHHHHHHHHHHHHT--TCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSS
T ss_pred             CHHHHHHHHHHHHhc--cccCceEEEEcCHHHCCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCc
Confidence            677888888774211  1224689999999999999999999999999999977 8999999999999999999875432


Q ss_pred             Cc--c-----------cH---------HHHHHHHHHHHHHcCCcchhhhh
Q 024162           95 DK--G-----------DV---------DKAISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus        95 ~~--~-----------e~---------~~~~~~l~~~l~laGF~~v~~~~  122 (271)
                      ..  .           .+         ....+.+...+..+||..++...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  202 (219)
T 3dlc_A          153 KELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIIL  202 (219)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEEE
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEEe
Confidence            10  0           00         00124566778899998876553

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.96  E-value=4.9e-10  Score=99.63  Aligned_cols=70  Identities=17%  Similarity=0.242  Sum_probs=61.2

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      +++.|++.++++         .++.+++++++++|+++++||+|++..++||++.+.+++|++|+|||||+|++..+..
T Consensus        69 ~s~~ml~~a~~~---------~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~~~~  138 (257)
T 4hg2_A           69 PGEAQIRQALRH---------PRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVTYGL  138 (257)
T ss_dssp             SCHHHHHTCCCC---------TTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             CcHHhhhhhhhc---------CCceeehhhhhhhcccCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            467787665432         5689999999999999999999999999999988999999999999999999988764

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.87  E-value=2.6e-09  Score=89.71  Aligned_cols=100  Identities=15%  Similarity=0.166  Sum_probs=78.8

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC--h-HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP--G-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~--~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .++.|++.++++.        .++.++++++.++++++++||+|++..+++|++  + ..+|++++|+|||||+|++..+
T Consensus        71 ~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  142 (203)
T 3h2b_A           71 PATRLVELARQTH--------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFF  142 (203)
T ss_dssp             CCHHHHHHHHHHC--------TTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHhC--------CCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            3678899988875        467899999999999999999999999999986  4 8999999999999999999987


Q ss_pred             CCCCcccH--------HHHHHHHHHHHHHcCCcchhhhh
Q 024162           92 LTSDKGDV--------DKAISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus        92 ~~~~~~e~--------~~~~~~l~~~l~laGF~~v~~~~  122 (271)
                      .......+        .-....+...+..+||..++...
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  181 (203)
T 3h2b_A          143 SGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHW  181 (203)
T ss_dssp             CCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred             cCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence            64321000        00124677788999999876543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.86  E-value=1.4e-08  Score=86.03  Aligned_cols=70  Identities=20%  Similarity=0.322  Sum_probs=60.9

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HH--HHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQ--LLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~--~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .++.|++.++++..       .++.++++++.+++++ ++||+|++..+++++++ ..  +|++++|+|||||++++.++
T Consensus        75 ~s~~~~~~a~~~~~-------~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  146 (220)
T 3hnr_A           75 PSREMRMIAKEKLP-------KEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADT  146 (220)
T ss_dssp             SCHHHHHHHHHHSC-------TTCCEESCCSSSCCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCHHHHHHHHHhCC-------CceEEEeCChhhcCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            36788888888762       3678899999999988 99999999999999987 44  99999999999999999986


Q ss_pred             C
Q 024162           92 L   92 (271)
Q Consensus        92 ~   92 (271)
                      .
T Consensus       147 ~  147 (220)
T 3hnr_A          147 I  147 (220)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.85  E-value=1e-08  Score=88.74  Aligned_cols=76  Identities=18%  Similarity=0.323  Sum_probs=63.5

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .++.|++.++++...   ....++.+++++++.+|+++++||+|++..+++|+.+ ..++++++|+|||||+|++.+...
T Consensus        51 ~s~~~~~~a~~~~~~---~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  127 (239)
T 1xxl_A           51 ATKEMVEVASSFAQE---KGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  127 (239)
T ss_dssp             SCHHHHHHHHHHHHH---HTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             CCHHHHHHHHHHHHH---cCCCCeEEEecccccCCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            367788888876421   1124689999999999999999999999999999987 899999999999999999987653

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.85  E-value=5.3e-09  Score=85.31  Aligned_cols=112  Identities=19%  Similarity=0.264  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      ++.|++.++++.        .++.+..++   +++++++||+|++..+++++.+ ..++++++|+|||||++++.++...
T Consensus        48 s~~~~~~a~~~~--------~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  116 (170)
T 3i9f_A           48 NVIALKEVKEKF--------DSVITLSDP---KEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE  116 (170)
T ss_dssp             CHHHHHHHHHHC--------TTSEEESSG---GGSCTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             CHHHHHHHHHhC--------CCcEEEeCC---CCCCCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence            577888888773        467888887   7888999999999999999977 8999999999999999999987643


Q ss_pred             Cc-----ccHHHHHHHHHHHHHHcCCcchhhhhhccccCcceeEEEEEeeCCCcccc
Q 024162           95 DK-----GDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIG  146 (271)
Q Consensus        95 ~~-----~e~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~~~~~i~a~KPs~~~g  146 (271)
                      ..     ....-..+.+...+.  ||..++.....+      ..+.+.++++.-..+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~------~~~~l~~~~~~~~~~  165 (170)
T 3i9f_A          117 NTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTP------YHFGLVLKRKTSEGH  165 (170)
T ss_dssp             CCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSST------TEEEEEEEECCCCSC
T ss_pred             ccccCchHhhhcCHHHHHHHHh--CcEEEEccCCCC------ceEEEEEecCCCCcc
Confidence            11     000001234555555  999877655422      244555555444333

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.84  E-value=7.4e-09  Score=89.85  Aligned_cols=103  Identities=15%  Similarity=0.158  Sum_probs=75.2

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .++.|++.++++....  ....++.+++++++++++ +++||+|++..+++++++ ..+|++++|+|||||+|++.+...
T Consensus        67 ~s~~~l~~a~~~~~~~--~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~  143 (256)
T 1nkv_A           67 MSSLFTAQAKRRAEEL--GVSERVHFIHNDAAGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYW  143 (256)
T ss_dssp             SCHHHHHHHHHHHHHT--TCTTTEEEEESCCTTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHhc--CCCcceEEEECChHhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcc
Confidence            3678888888774211  112368999999999988 889999999999999977 999999999999999999987532


Q ss_pred             CCc---ccHHH-----------HHHHHHHHHHHcCCcchhh
Q 024162           94 SDK---GDVDK-----------AISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        94 ~~~---~e~~~-----------~~~~l~~~l~laGF~~v~~  120 (271)
                      ...   ..+..           ....+...+..+||..++.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  184 (256)
T 1nkv_A          144 RQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEM  184 (256)
T ss_dssp             TTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred             cCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEE
Confidence            110   00110           1235667788899987643

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.83  E-value=7.6e-09  Score=89.86  Aligned_cols=101  Identities=19%  Similarity=0.265  Sum_probs=77.2

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccC--Ch-HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL--PG-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~--~~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .++.|++.++++....     .++.++++++..+|+++++||+|++..+++|+  .+ ..++++++|+|||||+|++.++
T Consensus        86 ~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A           86 ICSNIVNMANERVSGN-----NKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             SCHHHHHHHHHTCCSC-----TTEEEEECCTTTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHhhcC-----CCeEEEECccccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            3678999999885321     57899999999999999999999999999999  45 8899999999999999999986


Q ss_pred             CCCCcc----cHHH----------HHHHHHHHHHHcCCcchhh
Q 024162           92 LTSDKG----DVDK----------AISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        92 ~~~~~~----e~~~----------~~~~l~~~l~laGF~~v~~  120 (271)
                      ......    ....          ....+...+..+||..++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  203 (266)
T 3ujc_A          161 CATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVS  203 (266)
T ss_dssp             EESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             ccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEE
Confidence            432210    1111          1235566778888876543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.82  E-value=9.8e-09  Score=89.19  Aligned_cols=70  Identities=16%  Similarity=0.290  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      ++.|++.++++..      ..++.++++++..+++++++||+|++..+++++.+ ..+|++++|+|||||+|++...
T Consensus        76 s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  146 (253)
T 3g5l_A           76 SERMLTEAKRKTT------SPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVE  146 (253)
T ss_dssp             CHHHHHHHHHHCC------CTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHhhc------cCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeC
Confidence            6789999998863      25789999999999999999999999999999977 9999999999999999999854

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.82  E-value=1.4e-08  Score=86.81  Aligned_cols=71  Identities=13%  Similarity=0.108  Sum_probs=61.8

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHH-HhccCCcEEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEIS-RVLKPGGTILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~-RvLKPGG~l~i~~~~   92 (271)
                      .++.|++.++++..       .++.+++++++++ +++++||+|++..+++|+++ ..+|++++ |+|||||+|++.++.
T Consensus        72 ~s~~~~~~a~~~~~-------~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~  143 (250)
T 2p7i_A           72 ASEEAISHAQGRLK-------DGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN  143 (250)
T ss_dssp             SCHHHHHHHHHHSC-------SCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CCHHHHHHHHHhhh-------CCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            46789999998852       1689999999888 57889999999999999987 89999999 999999999999865


Q ss_pred             C
Q 024162           93 T   93 (271)
Q Consensus        93 ~   93 (271)
                      .
T Consensus       144 ~  144 (250)
T 2p7i_A          144 A  144 (250)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.81  E-value=6.5e-09  Score=93.51  Aligned_cols=119  Identities=19%  Similarity=0.189  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-H---HHHHHHHHhccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-D---QLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~---~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      ++.|++.++++....  ....++.++++|+.+++++ ++||+|++..+++|+++ .   .++++++|+|||||+|++.++
T Consensus       152 s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  228 (305)
T 3ocj_A          152 DPEALDGATRLAAGH--ALAGQITLHRQDAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFL  228 (305)
T ss_dssp             CHHHHHHHHHHHTTS--TTGGGEEEEECCGGGCCCC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CHHHHHHHHHHHHhc--CCCCceEEEECchhcCCcc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            688899998874211  1123489999999999988 99999999999999875 3   379999999999999999986


Q ss_pred             CCCCc----c-----cHH----------------------HHHHHHHHHHHHcCCcchhhhhhccccCcceeEEEEEeeC
Q 024162           92 LTSDK----G-----DVD----------------------KAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKK  140 (271)
Q Consensus        92 ~~~~~----~-----e~~----------------------~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~~~~~i~a~K  140 (271)
                      .....    .     ...                      ...+.+...+..+||..++.....     ......+.++|
T Consensus       229 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~-----~~~~~~v~a~K  303 (305)
T 3ocj_A          229 TPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDR-----ARLFPTVIARK  303 (305)
T ss_dssp             CCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEECCT-----TSSSCEEEEEC
T ss_pred             CCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEccc-----CceeeEEEEec
Confidence            53210    0     000                      013466778899999987654321     11234577788


Q ss_pred             CC
Q 024162          141 PT  142 (271)
Q Consensus       141 Ps  142 (271)
                      |.
T Consensus       304 pa  305 (305)
T 3ocj_A          304 PA  305 (305)
T ss_dssp             CC
T ss_pred             CC
Confidence            73

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.80  E-value=8.9e-09  Score=91.68  Aligned_cols=103  Identities=18%  Similarity=0.275  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      ++.|++.++++....  ....++.++++++..+|+++++||+|++..+++|+++ ..+|++++|+|||||+|++.++...
T Consensus       114 s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  191 (297)
T 2o57_A          114 APVQNKRNEEYNNQA--GLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE  191 (297)
T ss_dssp             CHHHHHHHHHHHHHH--TCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             CHHHHHHHHHHHHhc--CCCcceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence            577888888764211  1224689999999999999999999999999999987 9999999999999999999986432


Q ss_pred             Cc---ccHHH-----------HHHHHHHHHHHcCCcchhh
Q 024162           95 DK---GDVDK-----------AISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        95 ~~---~e~~~-----------~~~~l~~~l~laGF~~v~~  120 (271)
                      ..   .....           ....+...+..+||..++.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  231 (297)
T 2o57_A          192 DGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRT  231 (297)
T ss_dssp             TTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred             CCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEE
Confidence            11   11111           1234456677888876543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.79  E-value=1.2e-08  Score=87.59  Aligned_cols=101  Identities=23%  Similarity=0.229  Sum_probs=77.9

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .++.|++.++++..      ..++.++++++.++++++++||+|++..+++|+++ ..++++++|+|||||+|++.++..
T Consensus        83 ~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  156 (242)
T 3l8d_A           83 ISEVMIQKGKERGE------GPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGP  156 (242)
T ss_dssp             SCHHHHHHHHTTTC------BTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             CCHHHHHHHHhhcc------cCCceEEEcchhcCCCCCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence            36788888887741      25789999999999999999999999999999987 899999999999999999998654


Q ss_pred             CCccc---HH-----------HHHHHHHHHHHHcCCcchhhh
Q 024162           94 SDKGD---VD-----------KAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        94 ~~~~e---~~-----------~~~~~l~~~l~laGF~~v~~~  121 (271)
                      .....   ..           -....+...+..+||..++..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  198 (242)
T 3l8d_A          157 TAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI  198 (242)
T ss_dssp             TCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             cchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence            21100   00           012356677888999876543

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.78  E-value=1.4e-08  Score=94.59  Aligned_cols=107  Identities=20%  Similarity=0.263  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhCchhhh-----cCCCCeEEEeccCCCC------CCCCCceeEEEeccccccCCh-HHHHHHHHHhccCC
Q 024162           16 VSAVLNAIRDLGDEAVE-----QCDPQIITQASSLSQL------PVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPG   83 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~-----~~~~~v~~~~~d~e~l------p~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPG   83 (271)
                      ++.|++.++++......     ....++.+++++++++      ++++++||+|++..+++++++ ..+|++++|+||||
T Consensus       117 s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg  196 (383)
T 4fsd_A          117 LDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDG  196 (383)
T ss_dssp             CHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             CHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCC
Confidence            67888888876421100     1125799999999988      999999999999999999987 99999999999999


Q ss_pred             cEEEEEecCCCCc--ccHHH-------------HHHHHHHHHHHcCCcchhhhh
Q 024162           84 GTILIYKKLTSDK--GDVDK-------------AISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus        84 G~l~i~~~~~~~~--~e~~~-------------~~~~l~~~l~laGF~~v~~~~  122 (271)
                      |+|++.++.....  .....             .++.+...+..+||..++...
T Consensus       197 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~  250 (383)
T 4fsd_A          197 GELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVS  250 (383)
T ss_dssp             EEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTTCCCEEEEE
T ss_pred             CEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCCCceEEEEe
Confidence            9999987643211  00000             124677788999998765443

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.78  E-value=2.7e-08  Score=87.32  Aligned_cols=104  Identities=15%  Similarity=0.201  Sum_probs=76.9

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      .++.|++.++++....  ....++.+++++++++|+++++||+|++..+++++....++++++|+|||||+|++.+....
T Consensus        77 ~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  154 (267)
T 3kkz_A           77 FLSGFIDIFNRNARQS--GLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECSWF  154 (267)
T ss_dssp             SCHHHHHHHHHHHHHT--TCTTTEEEEECCTTSCCCCTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEEES
T ss_pred             CCHHHHHHHHHHHHHc--CCCcCcEEEEcChhhCCCCCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEeeec
Confidence            3678888888874211  12245999999999999999999999999999999559999999999999999999985311


Q ss_pred             ---CcccHHHHH----------HHHHHHHHHcCCcchhh
Q 024162           95 ---DKGDVDKAI----------SALEGKLLLAGFLDAQR  120 (271)
Q Consensus        95 ---~~~e~~~~~----------~~l~~~l~laGF~~v~~  120 (271)
                         ........|          ..+...+..+||..++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  193 (267)
T 3kkz_A          155 TDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVAT  193 (267)
T ss_dssp             SSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEE
T ss_pred             CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEE
Confidence               111222222          34556678888887644

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.77  E-value=3.3e-08  Score=85.76  Aligned_cols=103  Identities=18%  Similarity=0.280  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC--C
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL--T   93 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~--~   93 (271)
                      ++.|++.++++....  ....++.+++++++.+|+++++||+|++..+++++....++++++|+|||||+|++.+..  .
T Consensus        78 s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  155 (257)
T 3f4k_A           78 FPDFIEIFNENAVKA--NCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASWFT  155 (257)
T ss_dssp             CHHHHHHHHHHHHHT--TCTTTEEEEECCTTSCSSCTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEEESS
T ss_pred             CHHHHHHHHHHHHHc--CCCCceEEEECChhhCCCCCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence            577888888764211  112358999999999999999999999999999996699999999999999999999843  1


Q ss_pred             C-CcccHHHHH----------HHHHHHHHHcCCcchhh
Q 024162           94 S-DKGDVDKAI----------SALEGKLLLAGFLDAQR  120 (271)
Q Consensus        94 ~-~~~e~~~~~----------~~l~~~l~laGF~~v~~  120 (271)
                      . ........|          ..+...+..+||..+..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  193 (257)
T 3f4k_A          156 SERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH  193 (257)
T ss_dssp             SCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEE
T ss_pred             CCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEE
Confidence            1 111122222          34556677888877653

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.77  E-value=1.7e-08  Score=89.19  Aligned_cols=71  Identities=17%  Similarity=0.230  Sum_probs=61.6

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .++.|++.++++.        .++.+++++++.+|+ +++||+|++..+++|+.+ ..+|++++|+|||||+|++..+..
T Consensus        87 ~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~  157 (279)
T 3ccf_A           87 NAATMIEKARQNY--------PHLHFDVADARNFRV-DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGK  157 (279)
T ss_dssp             SCHHHHHHHHHHC--------TTSCEEECCTTTCCC-SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             CCHHHHHHHHhhC--------CCCEEEECChhhCCc-CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            3678888888775        456788999999998 579999999999999887 899999999999999999988764


Q ss_pred             C
Q 024162           94 S   94 (271)
Q Consensus        94 ~   94 (271)
                      .
T Consensus       158 ~  158 (279)
T 3ccf_A          158 G  158 (279)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.76  E-value=2.8e-08  Score=87.09  Aligned_cols=76  Identities=28%  Similarity=0.417  Sum_probs=63.4

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.|++.++++....  ....++.++.+++..+|+++++||+|++..+++|+++ ..+|++++|+|||||+|++.++.
T Consensus        92 ~s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  168 (273)
T 3bus_A           92 ISRPQVNQANARATAA--GLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFV  168 (273)
T ss_dssp             SCHHHHHHHHHHHHHT--TCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHhc--CCCcceEEEECccccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEee
Confidence            3678888888774211  1123689999999999999999999999999999977 89999999999999999999865

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.75  E-value=2e-08  Score=88.24  Aligned_cols=75  Identities=23%  Similarity=0.325  Sum_probs=63.2

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.|++.++++...   ....++.+..+++..+++++++||+|++..+++++++ ..++++++|+|||||+|++.++.
T Consensus        69 ~s~~~~~~a~~~~~~---~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (276)
T 3mgg_A           69 ISPESLEKARENTEK---NGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGD  144 (276)
T ss_dssp             SCHHHHHHHHHHHHH---TTCCSEEEEECCGGGCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHH---cCCCCcEEEEcccccCCCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            367788888877421   1124689999999999999999999999999999987 89999999999999999998854

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.73  E-value=3.5e-08  Score=85.63  Aligned_cols=71  Identities=27%  Similarity=0.394  Sum_probs=62.1

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~   89 (271)
                      .++.|++.++++..    ....++.+++++++.+|+++++||+|++..++||+++ ..++++++|+|||||+|++.
T Consensus        69 ~s~~~~~~a~~~~~----~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A           69 ADAAMLEVFRQKIA----GVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             SCHHHHHHHHHHTT----TSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHhh----ccCCceEEEEcccccCCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            46888999988751    1235789999999999999999999999999999987 89999999999999999987

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.73  E-value=9.6e-09  Score=88.88  Aligned_cols=102  Identities=12%  Similarity=0.134  Sum_probs=77.3

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .++.|++.++++....     .++.++++++..+++++++||+|++..+++|+++   ..+|++++|+|||||+|++.++
T Consensus       124 ~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          124 PVKHMLEEAKRELAGM-----PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             SCHHHHHHHHHHTTTS-----SEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHhccC-----CceEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            3688999999875221     5688999999999999999999999999999953   7899999999999999999985


Q ss_pred             CCCCc--------ccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           92 LTSDK--------GDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        92 ~~~~~--------~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                      .....        .......+.+...+..+||..++..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  236 (254)
T 1xtp_A          199 CSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA  236 (254)
T ss_dssp             BC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred             CCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEee
Confidence            32100        0000112366777889999876553

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.72  E-value=5.5e-09  Score=93.37  Aligned_cols=80  Identities=13%  Similarity=0.061  Sum_probs=60.4

Q ss_pred             ccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC------CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEE
Q 024162           14 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP------VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTI   86 (271)
Q Consensus        14 ~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp------~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l   86 (271)
                      -+|+.|++.++++........+..+.+..++++.++      +++++||+|++..++||+++ ..+|++++|+|||||+|
T Consensus        89 D~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l  168 (292)
T 2aot_A           89 EPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKM  168 (292)
T ss_dssp             CSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEE
T ss_pred             eCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEE
Confidence            368899999998742110011223455666666554      67899999999999999998 88999999999999999


Q ss_pred             EEEecCC
Q 024162           87 LIYKKLT   93 (271)
Q Consensus        87 ~i~~~~~   93 (271)
                      ++.....
T Consensus       169 ~i~~~~~  175 (292)
T 2aot_A          169 LIIVVSG  175 (292)
T ss_dssp             EEEEECT
T ss_pred             EEEEecC
Confidence            9987543

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.71  E-value=2.8e-08  Score=83.94  Aligned_cols=119  Identities=18%  Similarity=0.147  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC--h-HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP--G-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~--~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.++++.         .+.+..+++..++ .+++||+|++..++++++  + ..+|++++|+|||||+|++..+.
T Consensus        74 s~~~~~~a~~~~---------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  143 (211)
T 3e23_A           74 SPELAAEASRRL---------GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKS  143 (211)
T ss_dssp             CHHHHHHHHHHH---------TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CHHHHHHHHHhc---------CCceEEeeeccCC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            577888888764         2456778899888 789999999999999997  4 78999999999999999998765


Q ss_pred             CCCcc-c-H-----HHHHHHHHHHHHHcC-Ccchhhhhhcccc--CcceeEEEEEeeCCCcc
Q 024162           93 TSDKG-D-V-----DKAISALEGKLLLAG-FLDAQRIQLKSVV--PAEVVSFGVKGKKPTWK  144 (271)
Q Consensus        93 ~~~~~-e-~-----~~~~~~l~~~l~laG-F~~v~~~~~~~~~--~~~~~~~~i~a~KPs~~  144 (271)
                      ..... . .     .-..+.+...+..+| |..++........  .....++.+..++|.++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~  205 (211)
T 3e23_A          144 GEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELAQFLHVSVRKPELE  205 (211)
T ss_dssp             CSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEECTTSCEEEEEEEEEECCCC-
T ss_pred             CCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCCCCCCCceEEEEEEecCccc
Confidence            32100 0 0     001246777889999 9987654322111  11124666777777654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.70  E-value=7.3e-08  Score=81.89  Aligned_cols=78  Identities=17%  Similarity=0.237  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHhCchh-h-hcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-H---HHHHHHHHhccCCcEEEEE
Q 024162           16 VSAVLNAIRDLGDEA-V-EQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-D---QLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        16 s~~mv~~ar~~~~~~-~-~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~---~~L~ei~RvLKPGG~l~i~   89 (271)
                      ++.|++.++++.... . .....++.+..+++..+++++++||+|++..+++++++ .   .++++++|+|||||+|++.
T Consensus        61 s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (235)
T 3sm3_A           61 NSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLV  140 (235)
T ss_dssp             CHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            678888888874221 0 00112588999999999999999999999999999976 4   8999999999999999999


Q ss_pred             ecCC
Q 024162           90 KKLT   93 (271)
Q Consensus        90 ~~~~   93 (271)
                      ++..
T Consensus       141 ~~~~  144 (235)
T 3sm3_A          141 EFGQ  144 (235)
T ss_dssp             EEBC
T ss_pred             ECCc
Confidence            8754

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.68  E-value=6.9e-08  Score=84.36  Aligned_cols=67  Identities=18%  Similarity=0.315  Sum_probs=58.1

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecc-ccccCCh----HHHHHHHHHhccCCcEEEEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS-SSHELPG----DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~-~l~~~~~----~~~L~ei~RvLKPGG~l~i~   89 (271)
                      .++.|++.++++.        .++.++++++.++++ +++||+|++.. +++|+.+    ..+|++++|+|||||+|++.
T Consensus        80 ~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A           80 LSADMLAIARRRN--------PDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             SCHHHHHHHHHHC--------TTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCHHHHHHHHhhC--------CCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            3688999999875        357899999999988 78999999987 8999863    67899999999999999996


Q ss_pred             e
Q 024162           90 K   90 (271)
Q Consensus        90 ~   90 (271)
                      .
T Consensus       151 ~  151 (263)
T 3pfg_A          151 P  151 (263)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.68  E-value=1.5e-08  Score=86.89  Aligned_cols=71  Identities=21%  Similarity=0.330  Sum_probs=61.9

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .++.|++.++++...      .++.++++++..+++++++||+|++..+++++.+ ..++++++|+|||||+|++.+.
T Consensus        74 ~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A           74 LSEKMLARARAAGPD------TGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             SCHHHHHHHHHTSCS------SSEEEEECCGGGCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHhccc------CCceEEEcChhhccCCCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence            357889999887521      3688999999999998999999999999999977 8999999999999999999874

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.68  E-value=4.2e-08  Score=88.44  Aligned_cols=103  Identities=13%  Similarity=0.088  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD   95 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~   95 (271)
                      ++.|++.++++....  ....++.+++++++++|+++++||+|++..+++++....+|++++|+|||||+|++.++....
T Consensus       149 s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  226 (312)
T 3vc1_A          149 SAAQADFGNRRAREL--RIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNP  226 (312)
T ss_dssp             CHHHHHHHHHHHHHT--TCTTTEEEEECCTTSCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred             CHHHHHHHHHHHHHc--CCCCceEEEECChhcCCCCCCCEeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEccccc
Confidence            678888888874221  122368999999999999999999999999999996699999999999999999999864321


Q ss_pred             c----ccHHH-----------HHHHHHHHHHHcCCcchhh
Q 024162           96 K----GDVDK-----------AISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        96 ~----~e~~~-----------~~~~l~~~l~laGF~~v~~  120 (271)
                      .    .....           ..+.+...+..+||..++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~  266 (312)
T 3vc1_A          227 RYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTI  266 (312)
T ss_dssp             TTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEE
T ss_pred             cccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEE
Confidence            1    01100           1234556677788876543

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.67  E-value=3.8e-08  Score=82.98  Aligned_cols=72  Identities=26%  Similarity=0.329  Sum_probs=63.7

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .++.|++.++++.        .++.++++++.++|+++++||+|++..+++|+++ ..++++++|+|||||++++.++..
T Consensus        64 ~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  135 (211)
T 2gs9_A           64 PSEAMLAVGRRRA--------PEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEA  135 (211)
T ss_dssp             CCHHHHHHHHHHC--------TTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             CCHHHHHHHHHhC--------CCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            4678888888875        4578899999999999999999999999999987 899999999999999999998765


Q ss_pred             C
Q 024162           94 S   94 (271)
Q Consensus        94 ~   94 (271)
                      .
T Consensus       136 ~  136 (211)
T 2gs9_A          136 L  136 (211)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.67  E-value=2.4e-08  Score=86.27  Aligned_cols=104  Identities=15%  Similarity=0.139  Sum_probs=77.8

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .++.|++.++++....   ...++.++.+++..+++++++||+|++..+++++++   ..+|++++|+|||||+|++.++
T Consensus       110 ~s~~~~~~a~~~~~~~---~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  186 (241)
T 2ex4_A          110 ITEDFLVQAKTYLGEE---GKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN  186 (241)
T ss_dssp             SCHHHHHHHHHHTGGG---GGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHhhhc---CCceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence            3688899999875321   124688999999999998889999999999999986   3799999999999999999875


Q ss_pred             CCCC-------cccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           92 LTSD-------KGDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        92 ~~~~-------~~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                      ....       ........+.+...+..+||..+...
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  223 (241)
T 2ex4_A          187 MAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE  223 (241)
T ss_dssp             EBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence            3211       00000123467777889999876654

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.65  E-value=8.1e-08  Score=82.17  Aligned_cols=72  Identities=14%  Similarity=0.160  Sum_probs=59.0

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecc-ccccCC---h-HHHHHHHHHhccCCcEEEEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS-SSHELP---G-DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~-~l~~~~---~-~~~L~ei~RvLKPGG~l~i~   89 (271)
                      .++.|++.++++...    .+.++.++++++..++++ ++||+|++.. +++|++   + ..+|++++|+|||||+|++.
T Consensus        67 ~s~~~~~~a~~~~~~----~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A           67 LSQEMLSEAENKFRS----QGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             SCHHHHHHHHHHHHH----TTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHhh----cCCCeEEEecccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            367888888887421    123688999999999887 8999999998 999983   3 88999999999999999986


Q ss_pred             ec
Q 024162           90 KK   91 (271)
Q Consensus        90 ~~   91 (271)
                      .+
T Consensus       142 ~~  143 (246)
T 1y8c_A          142 IN  143 (246)
T ss_dssp             EE
T ss_pred             ec
Confidence            44

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.64  E-value=2.5e-08  Score=84.71  Aligned_cols=75  Identities=11%  Similarity=0.105  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHhCchhh---------hcCCCCeEEEeccCCCCCCCC-CceeEEEeccccccCCh---HHHHHHHHHhccC
Q 024162           16 VSAVLNAIRDLGDEAV---------EQCDPQIITQASSLSQLPVES-FSIDTVLSISSSHELPG---DQLLEEISRVLKP   82 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~---------~~~~~~v~~~~~d~e~lp~~~-~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKP   82 (271)
                      |+.|++.++++.....         .....++.++++|+.++++++ ++||+|++..++++++.   ..++++++|+|||
T Consensus        53 S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp  132 (203)
T 1pjz_A           53 SEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ  132 (203)
T ss_dssp             CHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS
T ss_pred             CHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC
Confidence            7889999988742100         001257899999999999876 89999999888888875   5689999999999


Q ss_pred             CcEEEEEe
Q 024162           83 GGTILIYK   90 (271)
Q Consensus        83 GG~l~i~~   90 (271)
                      ||++++..
T Consensus       133 gG~~~l~~  140 (203)
T 1pjz_A          133 ACSGLLIT  140 (203)
T ss_dssp             EEEEEEEE
T ss_pred             CcEEEEEE
Confidence            99944443

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.63  E-value=2.4e-07  Score=76.08  Aligned_cols=93  Identities=14%  Similarity=0.039  Sum_probs=72.1

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEec-cccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SSSHELPG---DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~-~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      .++.|++.++++.        .++.++++++..+++++++||+|++. ..++++..   ..++++++++|||||++++..
T Consensus        76 ~~~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~  147 (195)
T 3cgg_A           76 LDPILIDYAKQDF--------PEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGF  147 (195)
T ss_dssp             SCHHHHHHHHHHC--------TTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHhC--------CCCcEEEcccccCCCCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            3577888888765        34788999999999988999999997 67777753   789999999999999999987


Q ss_pred             cCCCCcccHHHHHHHHHHHHHHcCCcchhh
Q 024162           91 KLTSDKGDVDKAISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        91 ~~~~~~~e~~~~~~~l~~~l~laGF~~v~~  120 (271)
                      ...... .    ...+...+..+||..+..
T Consensus       148 ~~~~~~-~----~~~~~~~l~~~Gf~~~~~  172 (195)
T 3cgg_A          148 GAGRGW-V----FGDFLEVAERVGLELENA  172 (195)
T ss_dssp             ETTSSC-C----HHHHHHHHHHHTEEEEEE
T ss_pred             CCCCCc-C----HHHHHHHHHHcCCEEeee
Confidence            653211 1    125667788899987654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.62  E-value=1.8e-07  Score=78.65  Aligned_cols=70  Identities=13%  Similarity=0.195  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.+++..       ..++.++++++.++ +++++||+|++..+++|+++   ..+|++++|+|||||+|++.++.
T Consensus        77 s~~~~~~a~~~~-------~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A           77 SAEMIAEAGRHG-------LDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             CHHHHHHHGGGC-------CTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CHHHHHHHHhcC-------CCCeEEEecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            677888887732       15689999999988 88899999999999999987   78999999999999999999875


Q ss_pred             C
Q 024162           93 T   93 (271)
Q Consensus        93 ~   93 (271)
                      .
T Consensus       149 ~  149 (218)
T 3ou2_A          149 D  149 (218)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.62  E-value=4.1e-08  Score=86.58  Aligned_cols=82  Identities=23%  Similarity=0.239  Sum_probs=59.2

Q ss_pred             EEeccCCC-CCCC---CCceeEEEeccccccC-C---h-HHHHHHHHHhccCCcEEEEEecCCCCc---c-----cHHHH
Q 024162           40 TQASSLSQ-LPVE---SFSIDTVLSISSSHEL-P---G-DQLLEEISRVLKPGGTILIYKKLTSDK---G-----DVDKA  102 (271)
Q Consensus        40 ~~~~d~e~-lp~~---~~sfD~V~s~~~l~~~-~---~-~~~L~ei~RvLKPGG~l~i~~~~~~~~---~-----e~~~~  102 (271)
                      ++++|+.. .|++   .++||+|++++++|++ +   + ..++++++|+|||||+|++........   +     ...-.
T Consensus       138 ~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~  217 (263)
T 2a14_A          138 VLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALE  217 (263)
T ss_dssp             EEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCC
T ss_pred             EEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccC
Confidence            78899887 3543   6799999999999885 2   3 689999999999999999997543210   0     00001


Q ss_pred             HHHHHHHHHHcCCcchhhh
Q 024162          103 ISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus       103 ~~~l~~~l~laGF~~v~~~  121 (271)
                      .+.+...+..+||..++..
T Consensus       218 ~~~l~~~l~~aGF~i~~~~  236 (263)
T 2a14_A          218 KGEVEQAVLDAGFDIEQLL  236 (263)
T ss_dssp             HHHHHHHHHHTTEEEEEEE
T ss_pred             HHHHHHHHHHCCCEEEEEe
Confidence            2367778899999876543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.61  E-value=4.5e-08  Score=84.49  Aligned_cols=95  Identities=15%  Similarity=0.025  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC--CCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l--p~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ++.|++.++++           +.++.+++.++  |+++++||+|++..+++|+++   ..++++++|+|||||+|++..
T Consensus        72 s~~~~~~a~~~-----------~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (240)
T 3dli_A           72 NEDMIKFCEGK-----------FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIES  140 (240)
T ss_dssp             CHHHHHHHHTT-----------SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred             CHHHHHHHHhh-----------cceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            56666666654           46778888775  889999999999999999973   799999999999999999998


Q ss_pred             cCCCCcccHHH-----------HHHHHHHHHHHcCCcchhhh
Q 024162           91 KLTSDKGDVDK-----------AISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        91 ~~~~~~~e~~~-----------~~~~l~~~l~laGF~~v~~~  121 (271)
                      +..........           ..+.+...+..+||..+...
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~  182 (240)
T 3dli_A          141 PNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIE  182 (240)
T ss_dssp             ECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred             CCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEE
Confidence            76532211110           11356677888888865543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.61  E-value=1.3e-07  Score=80.68  Aligned_cols=96  Identities=19%  Similarity=0.210  Sum_probs=72.3

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .++.|++.++++          ++.++.+++..+++++++||+|++..+++++++ ..+|++++|+|||||+|++.++..
T Consensus        73 ~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  142 (219)
T 1vlm_A           73 PSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR  142 (219)
T ss_dssp             SCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             CCHHHHHHHHhc----------CCEEEEcccccCCCCCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence            367788887766          257888999999999999999999999999977 899999999999999999998654


Q ss_pred             CCcc-cHH---------------HHHHHHHHHHHHcCCcchhh
Q 024162           94 SDKG-DVD---------------KAISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        94 ~~~~-e~~---------------~~~~~l~~~l~laGF~~v~~  120 (271)
                      .... ...               -..+.+...+..+||..++.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~  185 (219)
T 1vlm_A          143 ESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV  185 (219)
T ss_dssp             SSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             ccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEE
Confidence            2110 000               01235566677788876543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.61  E-value=5.1e-08  Score=86.31  Aligned_cols=76  Identities=11%  Similarity=0.166  Sum_probs=63.1

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.|++.++++....  ....++.++++++..++ +.+++||+|++..+++|+++ ..++++++|+|||||+|++.++.
T Consensus        98 ~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  175 (285)
T 4htf_A           98 LSAQMIDRAKQAAEAK--GVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYN  175 (285)
T ss_dssp             SCHHHHHHHHHHHHC---CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             CCHHHHHHHHHHHHhc--CCCcceEEEEcCHHHhhhhcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence            3678888888874211  11146899999999988 88899999999999999987 89999999999999999998864

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.59  E-value=1e-07  Score=80.44  Aligned_cols=97  Identities=20%  Similarity=0.181  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC---CCCCC-ceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEe
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL---PVESF-SIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l---p~~~~-sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ++.|++.++++.         .+.+..+++..+   ++..+ +||+|++..+++ ..+ ..++++++|+|||||+|++.+
T Consensus        83 s~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~  152 (227)
T 3e8s_A           83 DRTLVDAARAAG---------AGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQT  152 (227)
T ss_dssp             CHHHHHHHHHTC---------SSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CHHHHHHHHHhc---------ccccchhhHHhhcccccccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEe
Confidence            678888888772         234566777666   65554 499999999888 555 999999999999999999998


Q ss_pred             cCCCCccc------------------------HHHHHHHHHHHHHHcCCcchhhhh
Q 024162           91 KLTSDKGD------------------------VDKAISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus        91 ~~~~~~~e------------------------~~~~~~~l~~~l~laGF~~v~~~~  122 (271)
                      +.......                        .....+.+...+..+||..++...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  208 (227)
T 3e8s_A          153 LHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQE  208 (227)
T ss_dssp             CCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEEC
T ss_pred             cCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEec
Confidence            64321100                        000234777889999999876543

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.57  E-value=1.1e-07  Score=82.39  Aligned_cols=70  Identities=14%  Similarity=0.150  Sum_probs=61.4

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .++.|++.++++.        .++.+++++++.++ ++++||+|++..++||+++ ..+|++++|+|||||+|++.++..
T Consensus        65 ~s~~~~~~a~~~~--------~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A           65 SDDDMLEKAADRL--------PNTNFGKADLATWK-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             SCHHHHHHHHHHS--------TTSEEEECCTTTCC-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             CCHHHHHHHHHhC--------CCcEEEECChhhcC-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            3678888888773        46789999999998 7889999999999999987 899999999999999999998653

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.55  E-value=2.1e-07  Score=82.70  Aligned_cols=72  Identities=13%  Similarity=0.172  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.++++...    ...++.++++|+.+++++ ++||+|++..+++++++ ..++++++|+|||||+|++.++.
T Consensus        56 s~~~~~~a~~~~~~----~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           56 GETLLAEARELFRL----LPYDSEFLEGDATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             CHHHHHHHHHHHHS----SSSEEEEEESCTTTCCCS-SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CHHHHHHHHHHHHh----cCCceEEEEcchhhcCcC-CCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            67788888887421    224789999999999984 69999999999999987 99999999999999999999876

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.54  E-value=1.9e-07  Score=83.35  Aligned_cols=77  Identities=23%  Similarity=0.302  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEe-ccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS-ISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s-~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      ++.|++.++++..........++.++++++.++++ +++||+|++ ...+++++.   ..+|++++|+|||||+|++..+
T Consensus       113 s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  191 (299)
T 3g2m_A          113 STSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLA  191 (299)
T ss_dssp             CHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence            67899999887421100000468999999999998 789999886 456777763   7899999999999999999886


Q ss_pred             CC
Q 024162           92 LT   93 (271)
Q Consensus        92 ~~   93 (271)
                      ..
T Consensus       192 ~~  193 (299)
T 3g2m_A          192 MS  193 (299)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.54  E-value=1.6e-07  Score=81.44  Aligned_cols=84  Identities=21%  Similarity=0.290  Sum_probs=60.9

Q ss_pred             e-EEEeccCCCCC-CCC---CceeEEEeccccc----cCCh-HHHHHHHHHhccCCcEEEEEecCCCCc--------ccH
Q 024162           38 I-ITQASSLSQLP-VES---FSIDTVLSISSSH----ELPG-DQLLEEISRVLKPGGTILIYKKLTSDK--------GDV   99 (271)
Q Consensus        38 v-~~~~~d~e~lp-~~~---~sfD~V~s~~~l~----~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~~~--------~e~   99 (271)
                      + .++++++.+.+ +++   ++||+|++..+++    ++.+ ..++++++|+|||||+|++.++.....        ...
T Consensus       136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~  215 (265)
T 2i62_A          136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSL  215 (265)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred             heeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccccc
Confidence            6 88999998764 356   8999999999888    4444 889999999999999999987542110        000


Q ss_pred             HHHHHHHHHHHHHcCCcchhhh
Q 024162          100 DKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus       100 ~~~~~~l~~~l~laGF~~v~~~  121 (271)
                      .-..+.+...+..+||..++..
T Consensus       216 ~~~~~~~~~~l~~aGf~~~~~~  237 (265)
T 2i62_A          216 PLGWETVRDAVEEAGYTIEQFE  237 (265)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCHHHHHHHHHHCCCEEEEEE
Confidence            0012366777889999876543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.54  E-value=1.1e-07  Score=80.44  Aligned_cols=79  Identities=23%  Similarity=0.282  Sum_probs=63.0

Q ss_pred             CeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCc
Q 024162           37 QIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  116 (271)
Q Consensus        37 ~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~  116 (271)
                      ++.+.++++.++|+++++||+|++..++|+.....++++++|+|||||++++.++.....     ....+...+..+||.
T Consensus        98 ~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~-----~~~~~~~~l~~~Gf~  172 (215)
T 2zfu_A           98 DPRVTVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFE-----DVRTFLRAVTKLGFK  172 (215)
T ss_dssp             STTEEESCTTSCSCCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECGGGCS-----CHHHHHHHHHHTTEE
T ss_pred             CceEEEeccccCCCCCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcCCCCC-----CHHHHHHHHHHCCCE
Confidence            356788999999999999999999988886333899999999999999999998763211     123566778899998


Q ss_pred             chhh
Q 024162          117 DAQR  120 (271)
Q Consensus       117 ~v~~  120 (271)
                      .+..
T Consensus       173 ~~~~  176 (215)
T 2zfu_A          173 IVSK  176 (215)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7654

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.53  E-value=5.3e-07  Score=83.27  Aligned_cols=103  Identities=13%  Similarity=0.076  Sum_probs=73.8

Q ss_pred             HHHHHHHHHhCchhhhcCCCCeEEEeccCCCC--CCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           17 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        17 ~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l--p~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      +.|++.++++....  ....++.++.+|+...  |++ ++||+|++..++|++++   ..+|++++|+|||||+|++.+.
T Consensus       212 ~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (363)
T 3dp7_A          212 PQQLEMMRKQTAGL--SGSERIHGHGANLLDRDVPFP-TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET  288 (363)
T ss_dssp             HHHHHHHHHHHTTC--TTGGGEEEEECCCCSSSCCCC-CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             HHHHHHHHHHHHhc--CcccceEEEEccccccCCCCC-CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence            67888888874211  1114689999999875  566 78999999999999886   4789999999999999999986


Q ss_pred             CCCCcccHH----------------------HHHHHHHHHHHHcCCcchhhhh
Q 024162           92 LTSDKGDVD----------------------KAISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus        92 ~~~~~~e~~----------------------~~~~~l~~~l~laGF~~v~~~~  122 (271)
                      .........                      ...+++...+..+||..++...
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~~  341 (363)
T 3dp7_A          289 LWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQD  341 (363)
T ss_dssp             CTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCCC
T ss_pred             ccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEEe
Confidence            532111000                      0123555667888888776653

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.52  E-value=2.1e-07  Score=78.02  Aligned_cols=74  Identities=23%  Similarity=0.327  Sum_probs=61.7

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC--h-HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP--G-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~--~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .++.|++.++++....    +.++.++++++.++++++++||+|++..+++|++  + ..++++++|+|||||++++.++
T Consensus        54 ~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  129 (209)
T 2p8j_A           54 ISDLQLKKAENFSREN----NFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFL  129 (209)
T ss_dssp             CCHHHHHHHHHHHHHH----TCCCCEEECCTTSCCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHhc----CCceEEEECchhhCCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            3678888888774221    2467889999999999999999999998888884  3 8899999999999999999886


Q ss_pred             C
Q 024162           92 L   92 (271)
Q Consensus        92 ~   92 (271)
                      .
T Consensus       130 ~  130 (209)
T 2p8j_A          130 T  130 (209)
T ss_dssp             E
T ss_pred             c
Confidence            5

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.51  E-value=1.4e-07  Score=80.99  Aligned_cols=102  Identities=13%  Similarity=0.125  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC--h-HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP--G-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~--~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.++++....  ....++.++++++.+++ ++.+||+|++..++++++  + ..++++++|+|||||+|++..+.
T Consensus        97 s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  173 (235)
T 3lcc_A           97 SESALAKANETYGSS--PKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYP  173 (235)
T ss_dssp             CHHHHHHHHHHHTTS--GGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CHHHHHHHHHHhhcc--CCCcceEEEECchhcCC-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence            678888888874221  11246899999999987 456999999999999997  4 88999999999999999998875


Q ss_pred             CCCc--c-cHHHHHHHHHHHHHHcCCcchhh
Q 024162           93 TSDK--G-DVDKAISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        93 ~~~~--~-e~~~~~~~l~~~l~laGF~~v~~  120 (271)
                      ....  . ......+.+...+..+||..+..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  204 (235)
T 3lcc_A          174 ITDHVGGPPYKVDVSTFEEVLVPIGFKAVSV  204 (235)
T ss_dssp             CSCCCSCSSCCCCHHHHHHHHGGGTEEEEEE
T ss_pred             ccccCCCCCccCCHHHHHHHHHHcCCeEEEE
Confidence            4211  0 00011236667788899987654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.51  E-value=6.2e-08  Score=85.03  Aligned_cols=82  Identities=18%  Similarity=0.185  Sum_probs=64.0

Q ss_pred             CeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCC-----ccc-HH---H-----
Q 024162           37 QIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSD-----KGD-VD---K-----  101 (271)
Q Consensus        37 ~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~~-----~~e-~~---~-----  101 (271)
                      ++.+++++++++|+++++||+|++..+++|+.+ ..++++++|+|| ||++++.++....     ... ..   .     
T Consensus        77 ~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
T 3ege_A           77 QVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRF  155 (261)
T ss_dssp             TEEEECCCTTSCCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTS
T ss_pred             CCEEEECchhhCCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhh
Confidence            689999999999999999999999999999987 999999999999 9999998876321     000 00   0     


Q ss_pred             --HHHHHHHHHHHcCCcchhh
Q 024162          102 --AISALEGKLLLAGFLDAQR  120 (271)
Q Consensus       102 --~~~~l~~~l~laGF~~v~~  120 (271)
                        ....+. .+..+||..++.
T Consensus       156 ~~~~~~~~-~l~~aGF~~v~~  175 (261)
T 3ege_A          156 LPLDEQIN-LLQENTKRRVEA  175 (261)
T ss_dssp             CCHHHHHH-HHHHHHCSEEEE
T ss_pred             CCCHHHHH-HHHHcCCCceeE
Confidence              123455 778888876654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.50  E-value=3.4e-07  Score=78.13  Aligned_cols=68  Identities=18%  Similarity=0.256  Sum_probs=56.2

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEe-ccccccCC---h-HHHHHHHHHhccCCcEEEEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS-ISSSHELP---G-DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s-~~~l~~~~---~-~~~L~ei~RvLKPGG~l~i~   89 (271)
                      .++.|++.++++.        .++.++++++.++++ +++||+|++ ..+++|++   + ..+|++++++|||||+|++.
T Consensus        70 ~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (239)
T 3bxo_A           70 LSEDMLTHARKRL--------PDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVE  140 (239)
T ss_dssp             SCHHHHHHHHHHC--------TTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCHHHHHHHHHhC--------CCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            3678888888775        357889999999888 789999996 44788874   2 78999999999999999998


Q ss_pred             ec
Q 024162           90 KK   91 (271)
Q Consensus        90 ~~   91 (271)
                      ++
T Consensus       141 ~~  142 (239)
T 3bxo_A          141 PW  142 (239)
T ss_dssp             CC
T ss_pred             ec
Confidence            64

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.50  E-value=2.3e-07  Score=81.95  Aligned_cols=76  Identities=12%  Similarity=0.065  Sum_probs=59.2

Q ss_pred             cHHHHHHHHHHhCch--------hhh------cCCCCeEEEeccCCCCCCCC-CceeEEEeccccccCCh---HHHHHHH
Q 024162           15 PVSAVLNAIRDLGDE--------AVE------QCDPQIITQASSLSQLPVES-FSIDTVLSISSSHELPG---DQLLEEI   76 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~--------~~~------~~~~~v~~~~~d~e~lp~~~-~sfD~V~s~~~l~~~~~---~~~L~ei   76 (271)
                      .|+.|++.++++...        ...      ....+|.|+++|+.++++.+ ++||+|++..++++++.   ..+++++
T Consensus        98 ~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~  177 (252)
T 2gb4_A           98 ISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADII  177 (252)
T ss_dssp             SCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHH
T ss_pred             CCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHH
Confidence            378888988876421        000      12357999999999999875 89999999888888864   6799999


Q ss_pred             HHhccCCcEEEEEe
Q 024162           77 SRVLKPGGTILIYK   90 (271)
Q Consensus        77 ~RvLKPGG~l~i~~   90 (271)
                      +|+|||||+|++.+
T Consensus       178 ~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          178 LSLLRKEFQYLVAV  191 (252)
T ss_dssp             HHTEEEEEEEEEEE
T ss_pred             HHHcCCCeEEEEEE
Confidence            99999999997554

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.49  E-value=1.5e-07  Score=81.79  Aligned_cols=101  Identities=19%  Similarity=0.229  Sum_probs=68.7

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC--CCCCCceeEEEe-----ccccccCCh-HHHHHHHHHhccCCcEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLS-----ISSSHELPG-DQLLEEISRVLKPGGTI   86 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l--p~~~~sfD~V~s-----~~~l~~~~~-~~~L~ei~RvLKPGG~l   86 (271)
                      .++.|++.||++...    ...++.++.++++.+  ++++++||.|+.     ...++++++ ..++++++|+|||||+|
T Consensus        91 ~~~~~~~~a~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l  166 (236)
T 3orh_A           91 CNDGVFQRLRDWAPR----QTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVL  166 (236)
T ss_dssp             CCHHHHHHHHHHGGG----CSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEE
T ss_pred             CCHHHHHHHHHHHhh----CCCceEEEeehHHhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEE
Confidence            468899999987532    235677888887644  688999999974     334455556 88999999999999999


Q ss_pred             EEEecCC------CCcccHHHH-HHHHHHHHHHcCCcchh
Q 024162           87 LIYKKLT------SDKGDVDKA-ISALEGKLLLAGFLDAQ  119 (271)
Q Consensus        87 ~i~~~~~------~~~~e~~~~-~~~l~~~l~laGF~~v~  119 (271)
                      ++.+...      ......... .+.....|..+||....
T Consensus       167 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~~  206 (236)
T 3orh_A          167 TYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRREN  206 (236)
T ss_dssp             EECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGGG
T ss_pred             EEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEEE
Confidence            9865321      011112221 22445668889998654

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.48  E-value=3.3e-07  Score=77.45  Aligned_cols=72  Identities=13%  Similarity=0.165  Sum_probs=61.3

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEEEe
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~----~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      .++.|++.++++...     ..++.++++++.+++ ++++||+|++..+++|+++    ..++++++|+|||||.|++.+
T Consensus        81 ~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A           81 VMPRAIGRACQRTKR-----WSHISWAATDILQFS-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             SCHHHHHHHHHHTTT-----CSSEEEEECCTTTCC-CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHhccc-----CCCeEEEEcchhhCC-CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            367899999988532     247899999999998 6889999999999999985    467999999999999999987


Q ss_pred             cC
Q 024162           91 KL   92 (271)
Q Consensus        91 ~~   92 (271)
                      ..
T Consensus       155 ~~  156 (216)
T 3ofk_A          155 AR  156 (216)
T ss_dssp             EC
T ss_pred             cC
Confidence            54

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.47  E-value=5.9e-07  Score=82.87  Aligned_cols=117  Identities=24%  Similarity=0.256  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .+.|++.++++...   ....+|.++.+|+...|++  .+|+|+...++|.|++   ..+|++++++|+|||+|+|.+..
T Consensus       211 lp~v~~~a~~~~~~---~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~  285 (353)
T 4a6d_A          211 IPEVVWTAKQHFSF---QEEEQIDFQEGDFFKDPLP--EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESL  285 (353)
T ss_dssp             CHHHHHHHHHHSCC-----CCSEEEEESCTTTSCCC--CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CHHHHHHHHHhhhh---cccCceeeecCccccCCCC--CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEee
Confidence            46788899887522   2236799999999776655  4799999999999987   57899999999999999999864


Q ss_pred             CCC--cccHHH----------------HHHHHHHHHHHcCCcchhhhhhccccCcceeEEEEEeeCCCc
Q 024162           93 TSD--KGDVDK----------------AISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTW  143 (271)
Q Consensus        93 ~~~--~~e~~~----------------~~~~l~~~l~laGF~~v~~~~~~~~~~~~~~~~~i~a~KPs~  143 (271)
                      ...  ......                +.+++...+..+||..++.....     +. .-.|.|+|.+.
T Consensus       286 ~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~~~~-----~~-~~~i~ArKgt~  348 (353)
T 4a6d_A          286 LDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKKTG-----AI-YDAILARKGTH  348 (353)
T ss_dssp             CCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEECCS-----SS-CEEEEEECCCC
T ss_pred             eCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEEcC-----Cc-eEEEEEEecCc
Confidence            321  111110                12355677889999988765432     12 22477888654

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.45  E-value=7e-07  Score=76.40  Aligned_cols=71  Identities=17%  Similarity=0.261  Sum_probs=57.0

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecc-ccccCC---h-HHHHHHHHHhccCCcEEEEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS-SSHELP---G-DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~-~l~~~~---~-~~~L~ei~RvLKPGG~l~i~   89 (271)
                      .++.|++.++++...    .+.++.++++++.+++++ ++||+|++.. +++|+.   + ..++++++|+|||||+|++.
T Consensus        62 ~s~~~~~~a~~~~~~----~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A           62 LSEEMLEIAQEKAME----TNRHVDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             SCHHHHHHHHHHHHH----TTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCHHHHHHHHHhhhh----cCCceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            367888888887421    125688999999998886 8999999976 788873   2 77999999999999999985


Q ss_pred             e
Q 024162           90 K   90 (271)
Q Consensus        90 ~   90 (271)
                      .
T Consensus       137 ~  137 (243)
T 3d2l_A          137 V  137 (243)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.44  E-value=2.6e-07  Score=82.55  Aligned_cols=75  Identities=13%  Similarity=0.185  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCC------CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVES------FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~------~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~   89 (271)
                      ++.|++.++++.... .....++.+++++++++++++      ++||+|++..++||+....++++++|+|||||+|++.
T Consensus        70 s~~~~~~a~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A           70 SATMIKTAEVIKEGS-PDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             CHHHHHHHHHHHHHC-C-CCTTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHhc-cCCCCceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEE
Confidence            678888888874211 012367999999999999888      8999999999999993399999999999999999995


Q ss_pred             ec
Q 024162           90 KK   91 (271)
Q Consensus        90 ~~   91 (271)
                      .+
T Consensus       149 ~~  150 (299)
T 3g5t_A          149 GY  150 (299)
T ss_dssp             EE
T ss_pred             ec
Confidence            44

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.44  E-value=4.7e-07  Score=80.04  Aligned_cols=74  Identities=15%  Similarity=0.165  Sum_probs=59.2

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC--h-HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP--G-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~--~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .++.|++.++++....  ....++.++.+++..+|   ++||+|++..+++|++  + ..++++++|+|||||+|++.++
T Consensus        95 ~s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  169 (287)
T 1kpg_A           95 LSKNQANHVQQLVANS--ENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  169 (287)
T ss_dssp             SCHHHHHHHHHHHHTC--CCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHhc--CCCCCeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            3678888888774211  12246889999998776   7999999999999984  4 8899999999999999999886


Q ss_pred             CC
Q 024162           92 LT   93 (271)
Q Consensus        92 ~~   93 (271)
                      ..
T Consensus       170 ~~  171 (287)
T 1kpg_A          170 TG  171 (287)
T ss_dssp             EE
T ss_pred             cC
Confidence            53

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.42  E-value=4.8e-07  Score=74.93  Aligned_cols=72  Identities=21%  Similarity=0.228  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC--h-HHHHHHHHHhccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP--G-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~--~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      ++.|++.++++....   ...++.++.+++.++++ +++||+|++..++++++  + ..++++++|+|||||++++.++
T Consensus        63 s~~~~~~a~~~~~~~---~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A           63 NAMSIANVERIKSIE---NLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             CHHHHHHHHHHHHHH---TCTTEEEEECCGGGCCC-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHhC---CCCCcEEEEcchhhCCC-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence            567788887764211   11368999999999988 88999999999999987  4 8899999999999999888764

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.41  E-value=2.4e-07  Score=79.86  Aligned_cols=100  Identities=18%  Similarity=0.213  Sum_probs=69.2

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC--CCCCCceeEEEe-cccc--ccCC--h-HHHHHHHHHhccCCcEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLS-ISSS--HELP--G-DQLLEEISRVLKPGGTI   86 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l--p~~~~sfD~V~s-~~~l--~~~~--~-~~~L~ei~RvLKPGG~l   86 (271)
                      .++.|++.++++...    ...++.+++++++++  ++++++||+|++ .+.+  +.++  . ..++++++|+|||||+|
T Consensus        91 ~s~~~l~~a~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l  166 (236)
T 1zx0_A           91 CNDGVFQRLRDWAPR----QTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVL  166 (236)
T ss_dssp             CCHHHHHHHHHHGGG----CSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEE
T ss_pred             CCHHHHHHHHHHHHh----cCCCeEEEecCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEE
Confidence            478899999987532    225789999999988  899999999999 4442  2222  2 47799999999999999


Q ss_pred             EEEecCCC------CcccHHHHH-HHHHHHHHHcCCcch
Q 024162           87 LIYKKLTS------DKGDVDKAI-SALEGKLLLAGFLDA  118 (271)
Q Consensus        87 ~i~~~~~~------~~~e~~~~~-~~l~~~l~laGF~~v  118 (271)
                      ++.+....      ....+...+ +.....+..+||...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~  205 (236)
T 1zx0_A          167 TYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRE  205 (236)
T ss_dssp             EECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGG
T ss_pred             EEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCCC
Confidence            98764310      011122211 233456888999853

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.41  E-value=7.9e-07  Score=75.03  Aligned_cols=67  Identities=15%  Similarity=0.117  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC--CCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ--LPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~--lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.++++.          ..+..+++..  +++++++||+|++..+++|+.+ ..++++++|+|||||++++..+.
T Consensus        63 ~~~~~~~~~~~~----------~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A           63 FPEAAEQAKEKL----------DHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             SHHHHHHHHTTS----------SEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred             CHHHHHHHHHhC----------CcEEEcchhhcCCCCCCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            567777777654          1567788876  6788899999999999999877 89999999999999999998765

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.40  E-value=5.5e-07  Score=81.32  Aligned_cols=101  Identities=20%  Similarity=0.213  Sum_probs=71.9

Q ss_pred             HHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCCC
Q 024162           18 AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        18 ~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      .|++.++++....  ....++.++.+++.+.+++.+ ||+|++..++|++++   ..+|++++++|||||++++.++...
T Consensus       199 ~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  275 (335)
T 2r3s_A          199 SVLEVAKENARIQ--GVASRYHTIAGSAFEVDYGND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPN  275 (335)
T ss_dssp             HHHHHHHHHHHHH--TCGGGEEEEESCTTTSCCCSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHhc--CCCcceEEEecccccCCCCCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence            7888888763211  112358999999988887665 999999999999965   6899999999999999999987543


Q ss_pred             Cc--cc-HHH----------------HHHHHHHHHHHcCCcchhhh
Q 024162           95 DK--GD-VDK----------------AISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        95 ~~--~e-~~~----------------~~~~l~~~l~laGF~~v~~~  121 (271)
                      ..  .. ...                ..+++...+..+||..++..
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~  321 (335)
T 2r3s_A          276 SDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLH  321 (335)
T ss_dssp             TTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred             CCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEE
Confidence            11  00 000                12355566788888876654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.39  E-value=2.5e-07  Score=82.23  Aligned_cols=84  Identities=20%  Similarity=0.319  Sum_probs=59.7

Q ss_pred             eEEEeccCCC-CCC-----CCCceeEEEecccccc----CCh-HHHHHHHHHhccCCcEEEEEecCCCCc---c-----c
Q 024162           38 IITQASSLSQ-LPV-----ESFSIDTVLSISSSHE----LPG-DQLLEEISRVLKPGGTILIYKKLTSDK---G-----D   98 (271)
Q Consensus        38 v~~~~~d~e~-lp~-----~~~sfD~V~s~~~l~~----~~~-~~~L~ei~RvLKPGG~l~i~~~~~~~~---~-----e   98 (271)
                      +.++++|+.. +|+     ++++||+|+++.+++|    +.+ ..+|++++|+|||||+|++........   .     .
T Consensus       152 ~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~  231 (289)
T 2g72_A          152 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTV  231 (289)
T ss_dssp             EEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEEC
T ss_pred             ceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeee
Confidence            4567778887 664     4567999999999998    545 889999999999999999975332110   0     0


Q ss_pred             HHHHHHHHHHHHHHcCCcchhhh
Q 024162           99 VDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        99 ~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                      ..-..+.+...+..+||..+...
T Consensus       232 ~~~~~~~l~~~l~~aGf~~~~~~  254 (289)
T 2g72_A          232 VPVSEEEVREALVRSGYKVRDLR  254 (289)
T ss_dssp             CCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ccCCHHHHHHHHHHcCCeEEEee
Confidence            00012366777889999876543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.38  E-value=4.9e-07  Score=75.65  Aligned_cols=73  Identities=32%  Similarity=0.400  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC---------------h-HHHHHHHHHh
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---------------G-DQLLEEISRV   79 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~---------------~-~~~L~ei~Rv   79 (271)
                      ++.|++.++++...     ..++.++++++..+++++++||+|++..+++++.               + ..++++++|+
T Consensus        74 s~~~~~~a~~~~~~-----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  148 (215)
T 2pxx_A           74 SSVVVAAMQACYAH-----VPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRV  148 (215)
T ss_dssp             CHHHHHHHHHHTTT-----CTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhccc-----CCCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHh
Confidence            67888888887532     2568899999999999999999999977665443               3 7899999999


Q ss_pred             ccCCcEEEEEecCC
Q 024162           80 LKPGGTILIYKKLT   93 (271)
Q Consensus        80 LKPGG~l~i~~~~~   93 (271)
                      |||||++++.++..
T Consensus       149 LkpgG~li~~~~~~  162 (215)
T 2pxx_A          149 LVPGGRFISMTSAA  162 (215)
T ss_dssp             EEEEEEEEEEESCC
T ss_pred             CcCCCEEEEEeCCC
Confidence            99999999999863

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.36  E-value=1e-06  Score=79.23  Aligned_cols=74  Identities=7%  Similarity=0.129  Sum_probs=59.6

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC--h-HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP--G-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~--~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .++.|++.++++....  ....++.++.+++.++|   ++||+|++..++++++  + ..++++++|+|||||+|++.++
T Consensus       121 ~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  195 (318)
T 2fk8_A          121 LSKNQHARCEQVLASI--DTNRSRQVLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS  195 (318)
T ss_dssp             SCHHHHHHHHHHHHTS--CCSSCEEEEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHhc--CCCCceEEEECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            3678888888874211  11245889999998875   7899999999999994  4 8899999999999999999987


Q ss_pred             CC
Q 024162           92 LT   93 (271)
Q Consensus        92 ~~   93 (271)
                      ..
T Consensus       196 ~~  197 (318)
T 2fk8_A          196 VS  197 (318)
T ss_dssp             EC
T ss_pred             cc
Confidence            64

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.35  E-value=8.2e-07  Score=80.58  Aligned_cols=101  Identities=13%  Similarity=0.141  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCC
Q 024162           17 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        17 ~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      +.|++.++++....  ....+|.++.+|+. .+++. +||+|++.+++|++++   ..+|++++|+|||||+|++.+...
T Consensus       202 ~~~~~~a~~~~~~~--~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  277 (332)
T 3i53_A          202 QGPASAAHRRFLDT--GLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVA  277 (332)
T ss_dssp             HHHHHHHHHHHHHT--TCTTTEEEEECCTT-SCCCC-SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred             HHHHHHHHHhhhhc--CcCcCeEEecCCCC-CCCCC-CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecC
Confidence            67888888764211  12256999999996 45655 8999999999999987   689999999999999999998753


Q ss_pred             CCcc-----cHH---------HHHHHHHHHHHHcCCcchhhh
Q 024162           94 SDKG-----DVD---------KAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        94 ~~~~-----e~~---------~~~~~l~~~l~laGF~~v~~~  121 (271)
                      ....     ++.         ...+++...+..+||..++..
T Consensus       278 ~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  319 (332)
T 3i53_A          278 GDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAH  319 (332)
T ss_dssp             C---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             CCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence            2110     000         012345566778888876554

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.35  E-value=2e-06  Score=78.45  Aligned_cols=115  Identities=17%  Similarity=0.173  Sum_probs=78.0

Q ss_pred             HHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-CCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCC
Q 024162           18 AVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        18 ~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .|++.++++....  ....++.++.+|+...+ +....||+|++..++|++++   ..+|++++++|||||+|++.+...
T Consensus       213 ~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  290 (352)
T 3mcz_A          213 TTRDAARKTIHAH--DLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTM  290 (352)
T ss_dssp             GGHHHHHHHHHHT--TCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHhc--CCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            4666777653211  11236899999998876 23556999999999999986   689999999999999999998643


Q ss_pred             CCc--ccHH-----------------HHHHHHHHHHHHcCCcchhhhhhccccCcceeEEEEEeeCCC
Q 024162           94 SDK--GDVD-----------------KAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPT  142 (271)
Q Consensus        94 ~~~--~e~~-----------------~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~~~~~i~a~KPs  142 (271)
                      ...  ....                 ...+++...+..+||..++... .       ....+.++||+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~-g-------~~~l~~a~kp~  350 (352)
T 3mcz_A          291 NDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERSI-G-------RYTLLIGQRSS  350 (352)
T ss_dssp             CTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEEE-T-------TEEEEEEECCC
T ss_pred             CCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeeecc-C-------ceEEEEEecCC
Confidence            211  0000                 0123456678889998876321 1       24567888885

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.32  E-value=1.9e-06  Score=76.92  Aligned_cols=74  Identities=9%  Similarity=0.160  Sum_probs=59.6

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh----------HHHHHHHHHhccCCc
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG----------DQLLEEISRVLKPGG   84 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~----------~~~L~ei~RvLKPGG   84 (271)
                      .++.|++.++++....  ....++.++.+++.++   +++||+|++..+++|+++          ..++++++|+|||||
T Consensus       103 ~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG  177 (302)
T 3hem_A          103 LSENQYAHDKAMFDEV--DSPRRKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDG  177 (302)
T ss_dssp             CCHHHHHHHHHHHHHS--CCSSCEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTC
T ss_pred             CCHHHHHHHHHHHHhc--CCCCceEEEECCHHHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCc
Confidence            3678888888874221  1123689999999876   789999999999999843          699999999999999


Q ss_pred             EEEEEecCC
Q 024162           85 TILIYKKLT   93 (271)
Q Consensus        85 ~l~i~~~~~   93 (271)
                      +|++.++..
T Consensus       178 ~l~i~~~~~  186 (302)
T 3hem_A          178 RMLLHTITI  186 (302)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEec
Confidence            999998764

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.32  E-value=1.1e-06  Score=74.40  Aligned_cols=76  Identities=16%  Similarity=0.055  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHhCch-hhh-cCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162           16 VSAVLNAIRDLGDE-AVE-QCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        16 s~~mv~~ar~~~~~-~~~-~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ++.|++.++++... +.. ....++.++++++..+++++++||+|++..+++++++   ..++++++|+|||||.+++..
T Consensus        62 s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A           62 SYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             CHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             CHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence            67888888887421 100 0012689999999999988899999999999999985   589999999999999776665


Q ss_pred             c
Q 024162           91 K   91 (271)
Q Consensus        91 ~   91 (271)
                      .
T Consensus       142 ~  142 (219)
T 3jwg_A          142 N  142 (219)
T ss_dssp             B
T ss_pred             c
Confidence            4

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.29  E-value=6.3e-07  Score=81.15  Aligned_cols=78  Identities=10%  Similarity=0.012  Sum_probs=57.3

Q ss_pred             cHHHHHHHHHHhCchhhhc---CCCCeEEEeccC------CCC--CCCCCceeEEEeccccccC-C--h-HHHHHHHHHh
Q 024162           15 PVSAVLNAIRDLGDEAVEQ---CDPQIITQASSL------SQL--PVESFSIDTVLSISSSHEL-P--G-DQLLEEISRV   79 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~---~~~~v~~~~~d~------e~l--p~~~~sfD~V~s~~~l~~~-~--~-~~~L~ei~Rv   79 (271)
                      .|+.|++.|+++.......   ....+.|.++++      +++  ++++++||+|++.+++||+ .  + ..+|++++|+
T Consensus        79 ~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~  158 (302)
T 2vdw_A           79 PDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSEL  158 (302)
T ss_dssp             SCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHH
Confidence            3888999999875321000   001366878877      433  3667899999999888875 2  2 8899999999


Q ss_pred             ccCCcEEEEEecC
Q 024162           80 LKPGGTILIYKKL   92 (271)
Q Consensus        80 LKPGG~l~i~~~~   92 (271)
                      |||||+|++.++.
T Consensus       159 LkpGG~~i~~~~~  171 (302)
T 2vdw_A          159 TASGGKVLITTMD  171 (302)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             cCCCCEEEEEeCC
Confidence            9999999999875

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.29  E-value=1.7e-06  Score=73.30  Aligned_cols=76  Identities=11%  Similarity=0.004  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHhCch-hhh-cCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162           16 VSAVLNAIRDLGDE-AVE-QCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        16 s~~mv~~ar~~~~~-~~~-~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ++.|++.++++... +.. ....++.++++++..++++.++||+|++..+++++++   ..++++++|+|||||.+++..
T Consensus        62 s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A           62 SYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             CHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            67888888887321 100 0012689999999888888899999999999999975   689999999999999887765


Q ss_pred             c
Q 024162           91 K   91 (271)
Q Consensus        91 ~   91 (271)
                      .
T Consensus       142 ~  142 (217)
T 3jwh_A          142 N  142 (217)
T ss_dssp             B
T ss_pred             C
Confidence            4

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.29  E-value=1.2e-06  Score=73.56  Aligned_cols=113  Identities=12%  Similarity=0.013  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD   95 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~   95 (271)
                      ++.|++.++++....   ...++.+.++++...  .+++||+|++...++++  ..++++++|+|||||++++.+.... 
T Consensus        92 s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~--~~~~fD~i~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-  163 (205)
T 3grz_A           92 SDESMTAAEENAALN---GIYDIALQKTSLLAD--VDGKFDLIVANILAEIL--LDLIPQLDSHLNEDGQVIFSGIDYL-  163 (205)
T ss_dssp             CHHHHHHHHHHHHHT---TCCCCEEEESSTTTT--CCSCEEEEEEESCHHHH--HHHGGGSGGGEEEEEEEEEEEEEGG-
T ss_pred             CHHHHHHHHHHHHHc---CCCceEEEecccccc--CCCCceEEEECCcHHHH--HHHHHHHHHhcCCCCEEEEEecCcc-
Confidence            577888888774211   112388999988664  46899999998766543  6889999999999999999876531 


Q ss_pred             cccHHHHHHHHHHHHHHcCCcchhhhhhccccCcceeEEEEEeeCCCcccccc
Q 024162           96 KGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSS  148 (271)
Q Consensus        96 ~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~~~~~i~a~KPs~~~gss  148 (271)
                        .    ...+...+..+||..+.......      -...++.++|..+.+++
T Consensus       164 --~----~~~~~~~~~~~Gf~~~~~~~~~~------w~~~~~~~~~~~~~~~~  204 (205)
T 3grz_A          164 --Q----LPKIEQALAENSFQIDLKMRAGR------WIGLAISRKHEGHHHHH  204 (205)
T ss_dssp             --G----HHHHHHHHHHTTEEEEEEEEETT------EEEEEEEECC-------
T ss_pred             --c----HHHHHHHHHHcCCceEEeeccCC------EEEEEEecccccccccC
Confidence              1    22566778889998876543211      12345666777666543

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.29  E-value=1.9e-06  Score=79.71  Aligned_cols=101  Identities=16%  Similarity=0.229  Sum_probs=71.0

Q ss_pred             HHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChH---HHHHHHHHhccCCcEEEEEecCC
Q 024162           17 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGD---QLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        17 ~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~---~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      +.|++.++++....  ....+|.++.+|+. .+++. .||+|++..++|+++++   .+|++++++|||||+|++.+...
T Consensus       235 ~~~~~~a~~~~~~~--~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~  310 (369)
T 3gwz_A          235 PPVAEEARELLTGR--GLADRCEILPGDFF-ETIPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLI  310 (369)
T ss_dssp             HHHHHHHHHHHHHT--TCTTTEEEEECCTT-TCCCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBC
T ss_pred             HHHHHHHHHhhhhc--CcCCceEEeccCCC-CCCCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            67788888764211  12356999999997 56666 89999999999999873   69999999999999999998654


Q ss_pred             CCcccHHH----------------HHHHHHHHHHHcCCcchhhh
Q 024162           94 SDKGDVDK----------------AISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        94 ~~~~e~~~----------------~~~~l~~~l~laGF~~v~~~  121 (271)
                      ........                ..+++...+..+||..++..
T Consensus       311 ~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~  354 (369)
T 3gwz_A          311 DERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSL  354 (369)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEE
T ss_pred             CCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEE
Confidence            32111000                12344556677777766554

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.27  E-value=1.8e-06  Score=73.03  Aligned_cols=73  Identities=22%  Similarity=0.345  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccccc--CCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE--LPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~--~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.++++...    ...++.++++++.++++++++||+|++..++++  ..+ ..++++++++|||||+|++.++.
T Consensus        69 s~~~~~~a~~~~~~----~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A           69 SEDMIRKAREYAKS----RESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             CHHHHHHHHHHHHH----TTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CHHHHHHHHHHHHh----cCCCceEEECchhcCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            57788888876421    125689999999999998899999999888443  334 78999999999999999998765

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.27  E-value=3.4e-06  Score=77.44  Aligned_cols=71  Identities=18%  Similarity=0.262  Sum_probs=55.6

Q ss_pred             HHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           17 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        17 ~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      +.|++.++++....  ....++.++.+|+.+ +++. .||+|++..++|++++   ..+|++++|+|||||+|++.+.
T Consensus       215 ~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          215 AGPAERARRRFADA--GLADRVTVAEGDFFK-PLPV-TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             HHHHHHHHHHHHHT--TCTTTEEEEECCTTS-CCSC-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhc--CCCCceEEEeCCCCC-cCCC-CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            57888888764211  112368999999865 4444 3999999999999987   3899999999999999999887

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.25  E-value=4e-06  Score=70.32  Aligned_cols=92  Identities=15%  Similarity=0.089  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD   95 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~   95 (271)
                      ++.|++.++++....   ...++.++.+++.+......+||+|++....+  ....++++++|+|||||+|++.....  
T Consensus        73 s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~--  145 (204)
T 3e05_A           73 NPQYLGFIRDNLKKF---VARNVTLVEAFAPEGLDDLPDPDRVFIGGSGG--MLEEIIDAVDRRLKSEGVIVLNAVTL--  145 (204)
T ss_dssp             CHHHHHHHHHHHHHH---TCTTEEEEECCTTTTCTTSCCCSEEEESCCTT--CHHHHHHHHHHHCCTTCEEEEEECBH--
T ss_pred             CHHHHHHHHHHHHHh---CCCcEEEEeCChhhhhhcCCCCCEEEECCCCc--CHHHHHHHHHHhcCCCeEEEEEeccc--
Confidence            577788887764211   11468899999866544457899999977654  33789999999999999999987652  


Q ss_pred             cccHHHHHHHHHHHHHHcCCcchhh
Q 024162           96 KGDVDKAISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        96 ~~e~~~~~~~l~~~l~laGF~~v~~  120 (271)
                           .....+...+..+|| +++.
T Consensus       146 -----~~~~~~~~~l~~~g~-~~~~  164 (204)
T 3e05_A          146 -----DTLTKAVEFLEDHGY-MVEV  164 (204)
T ss_dssp             -----HHHHHHHHHHHHTTC-EEEE
T ss_pred             -----ccHHHHHHHHHHCCC-ceeE
Confidence                 123356677889999 5443

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.25  E-value=5.6e-06  Score=70.15  Aligned_cols=94  Identities=19%  Similarity=0.031  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEeccccccCC---------hHHHHHHHHHhccCCc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSSHELP---------GDQLLEEISRVLKPGG   84 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~l~~~~---------~~~~L~ei~RvLKPGG   84 (271)
                      +..|++.++++....   ...++.++++++..++  +++++||+|++.+...|..         ...++.+++++|||||
T Consensus        74 s~~~l~~a~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  150 (214)
T 1yzh_A           74 QKSVLSYALDKVLEV---GVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENG  150 (214)
T ss_dssp             CHHHHHHHHHHHHHH---CCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTC
T ss_pred             CHHHHHHHHHHHHHc---CCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCc
Confidence            567777777764211   1247899999999887  8888999999987654432         1579999999999999


Q ss_pred             EEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchh
Q 024162           85 TILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  119 (271)
Q Consensus        85 ~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~  119 (271)
                      .|++.....    .   ....+...+..+||..+.
T Consensus       151 ~l~~~~~~~----~---~~~~~~~~~~~~g~~~~~  178 (214)
T 1yzh_A          151 EIHFKTDNR----G---LFEYSLVSFSQYGMKLNG  178 (214)
T ss_dssp             EEEEEESCH----H---HHHHHHHHHHHHTCEEEE
T ss_pred             EEEEEeCCH----H---HHHHHHHHHHHCCCeeee
Confidence            999986431    1   123455567778887543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.24  E-value=1.7e-06  Score=77.07  Aligned_cols=73  Identities=16%  Similarity=0.240  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-----------CCCCceeEEEeccccccCCh---HHHHHHHHHhcc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-----------VESFSIDTVLSISSSHELPG---DQLLEEISRVLK   81 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-----------~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLK   81 (271)
                      ++.|++.+|++...     ..++.|+++|+.+.+           ++.++||+|++..++||+++   ..+|++++|+||
T Consensus       113 sp~~l~~Ar~~~~~-----~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~  187 (274)
T 2qe6_A          113 DPMVLTHGRALLAK-----DPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALA  187 (274)
T ss_dssp             SHHHHHHHHHHHTT-----CTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSC
T ss_pred             ChHHHHHHHHhcCC-----CCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCC
Confidence            58899999987521     256899999997531           33358999999999999975   789999999999


Q ss_pred             CCcEEEEEecCC
Q 024162           82 PGGTILIYKKLT   93 (271)
Q Consensus        82 PGG~l~i~~~~~   93 (271)
                      |||+|++.+...
T Consensus       188 pGG~l~i~~~~~  199 (274)
T 2qe6_A          188 PGSYLFMTSLVD  199 (274)
T ss_dssp             TTCEEEEEEEBC
T ss_pred             CCcEEEEEEecC
Confidence            999999999775

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.24  E-value=1.5e-06  Score=76.66  Aligned_cols=76  Identities=18%  Similarity=0.148  Sum_probs=60.3

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCC-CCCceeEEEecccccc--CC--h-HHHHHHHHHhccCCcEEEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV-ESFSIDTVLSISSSHE--LP--G-DQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~-~~~sfD~V~s~~~l~~--~~--~-~~~L~ei~RvLKPGG~l~i   88 (271)
                      .++.|++.++++....  ....++.++++++..+++ ++++||+|++..++|+  .+  + ..+|++++|+|||||+|++
T Consensus        95 ~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  172 (298)
T 1ri5_A           95 IAEVSINDARVRARNM--KRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM  172 (298)
T ss_dssp             SCHHHHHHHHHHHHTS--CCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHhc--CCCccEEEEECCccccccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            3678888888774211  111358899999999998 6889999999988887  22  3 7899999999999999999


Q ss_pred             EecC
Q 024162           89 YKKL   92 (271)
Q Consensus        89 ~~~~   92 (271)
                      ..+.
T Consensus       173 ~~~~  176 (298)
T 1ri5_A          173 TVPS  176 (298)
T ss_dssp             EEEC
T ss_pred             EECC
Confidence            9865

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.23  E-value=1.8e-07  Score=87.54  Aligned_cols=101  Identities=14%  Similarity=0.182  Sum_probs=72.9

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      +++.|++.++++....     ....+...+++.+|+++++||+|++..+++|+++ ..+|++++|+|||||+|++..+..
T Consensus       137 ~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  211 (416)
T 4e2x_A          137 PSSGVAAKAREKGIRV-----RTDFFEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYL  211 (416)
T ss_dssp             CCHHHHHHHHTTTCCE-----ECSCCSHHHHHHHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CCHHHHHHHHHcCCCc-----ceeeechhhHhhcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence            4788999988873110     1112345666777888899999999999999987 999999999999999999987541


Q ss_pred             C--------------CcccHHHHHHHHHHHHHHcCCcchhhhh
Q 024162           94 S--------------DKGDVDKAISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus        94 ~--------------~~~e~~~~~~~l~~~l~laGF~~v~~~~  122 (271)
                      .              +..-.  ....+...+..+||..++...
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~--s~~~l~~ll~~aGf~~~~~~~  252 (416)
T 4e2x_A          212 GDIVAKTSFDQIFDEHFFLF--SATSVQGMAQRCGFELVDVQR  252 (416)
T ss_dssp             HHHHHHTCGGGCSTTCCEEC--CHHHHHHHHHHTTEEEEEEEE
T ss_pred             HHhhhhcchhhhhhhhhhcC--CHHHHHHHHHHcCCEEEEEEE
Confidence            0              00000  123667788999998765543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.23  E-value=3.6e-06  Score=70.21  Aligned_cols=74  Identities=24%  Similarity=0.294  Sum_probs=57.9

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccC-Ch-HHHHHHHHHhccCCcEEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL-PG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~-~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.|++.++++....    +.++.+.++++..+++++++||+|++... |+. .+ ..++++++|+|||||+|++.++.
T Consensus        59 ~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  133 (202)
T 2kw5_A           59 QSSVGLAKAKQLAQEK----GVKITTVQSNLADFDIVADAWEGIVSIFC-HLPSSLRQQLYPKVYQGLKPGGVFILEGFA  133 (202)
T ss_dssp             SSHHHHHHHHHHHHHH----TCCEEEECCBTTTBSCCTTTCSEEEEECC-CCCHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHhc----CCceEEEEcChhhcCCCcCCccEEEEEhh-cCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            3578888888774221    24789999999999999999999998542 332 23 78999999999999999999875


Q ss_pred             C
Q 024162           93 T   93 (271)
Q Consensus        93 ~   93 (271)
                      .
T Consensus       134 ~  134 (202)
T 2kw5_A          134 P  134 (202)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.21  E-value=7.1e-07  Score=78.97  Aligned_cols=77  Identities=18%  Similarity=0.247  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHhCch-hhhcCCCCeEEEeccCCCCC---CCCCceeEEEec-cccccCCh--------HHHHHHHHHhccC
Q 024162           16 VSAVLNAIRDLGDE-AVEQCDPQIITQASSLSQLP---VESFSIDTVLSI-SSSHELPG--------DQLLEEISRVLKP   82 (271)
Q Consensus        16 s~~mv~~ar~~~~~-~~~~~~~~v~~~~~d~e~lp---~~~~sfD~V~s~-~~l~~~~~--------~~~L~ei~RvLKP   82 (271)
                      ++.|++.++++... .......++.+..+++..++   +++++||+|++. .+++|+.+        ..+|++++|+|||
T Consensus        88 s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp  167 (293)
T 3thr_A           88 SDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP  167 (293)
T ss_dssp             CHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE
T ss_pred             CHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC
Confidence            67788888765311 00111245788889999888   889999999998 78887754        7899999999999


Q ss_pred             CcEEEEEecC
Q 024162           83 GGTILIYKKL   92 (271)
Q Consensus        83 GG~l~i~~~~   92 (271)
                      ||+|++..+.
T Consensus       168 gG~l~~~~~~  177 (293)
T 3thr_A          168 GGLLVIDHRN  177 (293)
T ss_dssp             EEEEEEEEEC
T ss_pred             CeEEEEEeCC
Confidence            9999998765

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.19  E-value=5.2e-06  Score=71.77  Aligned_cols=94  Identities=12%  Similarity=0.050  Sum_probs=67.3

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCC---CCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEe
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVE---SFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~---~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      .++.|++.+++.....   ...++.+++++++++++.   +++||+|++..    +.+ ..++++++|+|||||+|++..
T Consensus       102 ~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~  174 (240)
T 1xdz_A          102 SLNKRITFLEKLSEAL---QLENTTFCHDRAETFGQRKDVRESYDIVTARA----VARLSVLSELCLPLVKKNGLFVALK  174 (240)
T ss_dssp             SCHHHHHHHHHHHHHH---TCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC----CSCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHc---CCCCEEEEeccHHHhcccccccCCccEEEEec----cCCHHHHHHHHHHhcCCCCEEEEEe
Confidence            3678888888764221   113589999999988764   68999999865    233 889999999999999999875


Q ss_pred             cCCCCcccHHHHHHHHHHHHHHcCCcchhh
Q 024162           91 KLTSDKGDVDKAISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        91 ~~~~~~~e~~~~~~~l~~~l~laGF~~v~~  120 (271)
                      ...     .......+...+..+||..++.
T Consensus       175 g~~-----~~~~~~~~~~~l~~~g~~~~~~  199 (240)
T 1xdz_A          175 AAS-----AEEELNAGKKAITTLGGELENI  199 (240)
T ss_dssp             CC------CHHHHHHHHHHHHHTTEEEEEE
T ss_pred             CCC-----chHHHHHHHHHHHHcCCeEeEE
Confidence            431     1122335566788899976544

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.18  E-value=1.6e-05  Score=72.88  Aligned_cols=72  Identities=13%  Similarity=0.162  Sum_probs=55.7

Q ss_pred             HHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162           17 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        17 ~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      +.|++.++++....  ....++.++.+|+.+.|+++.  |+|++..++|++++   ..+|++++|+|||||+|++.++.
T Consensus       223 ~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~  297 (359)
T 1x19_A          223 PGAIDLVNENAAEK--GVADRMRGIAVDIYKESYPEA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV  297 (359)
T ss_dssp             GGGHHHHHHHHHHT--TCTTTEEEEECCTTTSCCCCC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred             HHHHHHHHHHHHhc--CCCCCEEEEeCccccCCCCCC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            45666666653111  112358999999998887754  99999999999876   77899999999999999998854

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.18  E-value=2.3e-06  Score=74.76  Aligned_cols=69  Identities=25%  Similarity=0.370  Sum_probs=57.2

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccc-cCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH-ELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~-~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.|++.++++..       .  .+++++++.+|+++++||+|++...++ +..+ ..+|++++|+|||||+|++..+.
T Consensus        84 ~s~~~l~~a~~~~~-------~--~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A           84 PSKEMLEVAREKGV-------K--NVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             SCHHHHHHHHHHTC-------S--CEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             CCHHHHHHHHhhcC-------C--CEEECcHHHCCCCCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            46889999988752       1  178899999999999999999976554 4455 89999999999999999998875

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.17  E-value=1e-06  Score=80.02  Aligned_cols=69  Identities=7%  Similarity=0.096  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.||++....  .. .++.++++++.++|  +++||+|++...   .++ ..++++++|+|||||+|++.+..
T Consensus       155 s~~~l~~Ar~~~~~~--gl-~~v~~v~gDa~~l~--d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          155 EPDIAELSRKVIEGL--GV-DGVNVITGDETVID--GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             SHHHHHHHHHHHHHH--TC-CSEEEEESCGGGGG--GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CHHHHHHHHHHHHhc--CC-CCeEEEECchhhCC--CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            788999999885321  12 57999999998876  789999997543   345 89999999999999999998854

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.17  E-value=4.9e-06  Score=73.00  Aligned_cols=103  Identities=12%  Similarity=0.104  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCC---CCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLS---QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e---~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      ++.|++.++++...     ..++..+.+++.   ..++..+++|+|++...  +..+ ..++.+++|+|||||++++...
T Consensus       111 s~~~~~~l~~~a~~-----~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~--~~~~~~~~l~~~~r~LKpGG~lvI~ik  183 (233)
T 4df3_A          111 APRVMRDLLTVVRD-----RRNIFPILGDARFPEKYRHLVEGVDGLYADVA--QPEQAAIVVRNARFFLRDGGYMLMAIK  183 (233)
T ss_dssp             CHHHHHHHHHHSTT-----CTTEEEEESCTTCGGGGTTTCCCEEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHhhHh-----hcCeeEEEEeccCccccccccceEEEEEEecc--CChhHHHHHHHHHHhccCCCEEEEEEe
Confidence            57788888777532     246777777764   45677889999987543  2233 7899999999999999999864


Q ss_pred             CCCC--cccHHHHHHHHHHHHHHcCCcchhhhhhcc
Q 024162           92 LTSD--KGDVDKAISALEGKLLLAGFLDAQRIQLKS  125 (271)
Q Consensus        92 ~~~~--~~e~~~~~~~l~~~l~laGF~~v~~~~~~~  125 (271)
                      ....  ........+.....|..+||..++.....|
T Consensus       184 ~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L~p  219 (233)
T 4df3_A          184 ARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDP  219 (233)
T ss_dssp             CCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             cccCCCCCChHHHHHHHHHHHHHCCCEEEEEEccCC
Confidence            4310  001112233445678889998877665444

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.16  E-value=9.6e-06  Score=66.29  Aligned_cols=74  Identities=14%  Similarity=0.103  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHhCchhhhcCCC--CeEEEeccCCCCCCCCCceeEEEeccccccC-Ch-HHHHHHHHHhccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSSHEL-PG-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~--~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~-~~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      ++.|++.++++....   ...  ++.+..+++.+ ++++++||+|++...+++. .. ..++++++++|||||++++..+
T Consensus        83 ~~~~~~~a~~~~~~~---~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  158 (194)
T 1dus_A           83 NRRAIKLAKENIKLN---NLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             CHHHHHHHHHHHHHT---TCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHc---CCCccceEEEECchhc-ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence            567788887764211   112  38899999877 4557899999998877763 33 7899999999999999999988


Q ss_pred             CC
Q 024162           92 LT   93 (271)
Q Consensus        92 ~~   93 (271)
                      ..
T Consensus       159 ~~  160 (194)
T 1dus_A          159 TK  160 (194)
T ss_dssp             ST
T ss_pred             CC
Confidence            73

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.16  E-value=3.2e-06  Score=77.38  Aligned_cols=84  Identities=15%  Similarity=0.172  Sum_probs=61.0

Q ss_pred             CCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCCCCc--ccHHH---------
Q 024162           36 PQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDK--GDVDK---------  101 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~~~~--~e~~~---------  101 (271)
                      .+|.++.+|+. .+++  +||+|++..++|++++   ..+|++++|+|||||+|++.+......  .....         
T Consensus       232 ~~v~~~~~d~~-~~~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~  308 (348)
T 3lst_A          232 GRWKVVEGDFL-REVP--HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAA  308 (348)
T ss_dssp             TSEEEEECCTT-TCCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHT
T ss_pred             CCeEEEecCCC-CCCC--CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhc
Confidence            56999999996 4455  8999999999999987   489999999999999999998643211  00100         


Q ss_pred             ------HHHHHHHHHHHcCCcchhhhh
Q 024162          102 ------AISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus       102 ------~~~~l~~~l~laGF~~v~~~~  122 (271)
                            ..+++...+..+||..++...
T Consensus       309 ~~~~~~t~~e~~~ll~~aGf~~~~~~~  335 (348)
T 3lst_A          309 RTGQERTAAELEPLFTAAGLRLDRVVG  335 (348)
T ss_dssp             TSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence                  123455667778887765543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.15  E-value=6.3e-06  Score=75.32  Aligned_cols=102  Identities=16%  Similarity=0.221  Sum_probs=68.9

Q ss_pred             HHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC-
Q 024162           17 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL-   92 (271)
Q Consensus        17 ~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~-   92 (271)
                      +.|++.++++....  ....++.++.+|+.+ +++. .||+|++..++|++++   ..++++++++|||||+|++.+.. 
T Consensus       216 ~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  291 (360)
T 1tw3_A          216 AGTVDTARSYLKDE--GLSDRVDVVEGDFFE-PLPR-KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDD  291 (360)
T ss_dssp             TTHHHHHHHHHHHT--TCTTTEEEEECCTTS-CCSS-CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred             HHHHHHHHHHHHhc--CCCCceEEEeCCCCC-CCCC-CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence            45777777653211  112368999999865 4444 4999999999999886   47999999999999999999876 


Q ss_pred             CC-Ccc-cHHH---------------HHHHHHHHHHHcCCcchhhhh
Q 024162           93 TS-DKG-DVDK---------------AISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus        93 ~~-~~~-e~~~---------------~~~~l~~~l~laGF~~v~~~~  122 (271)
                      .. ... ....               ..+.+...+..+||..++...
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  338 (360)
T 1tw3_A          292 LHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQ  338 (360)
T ss_dssp             CGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             cCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEe
Confidence            21 100 0100               123455667788888765543

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.15  E-value=3e-06  Score=76.11  Aligned_cols=77  Identities=12%  Similarity=0.060  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhCchhhh----cCCCCeEEEeccCCCCC----CC--CCceeEEEeccccccC-Ch----HHHHHHHHHhc
Q 024162           16 VSAVLNAIRDLGDEAVE----QCDPQIITQASSLSQLP----VE--SFSIDTVLSISSSHEL-PG----DQLLEEISRVL   80 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~----~~~~~v~~~~~d~e~lp----~~--~~sfD~V~s~~~l~~~-~~----~~~L~ei~RvL   80 (271)
                      ++.|++.++++......    ....++.++++|++.++    ++  +++||+|++..++||+ .+    ..+|++++|+|
T Consensus        66 s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L  145 (313)
T 3bgv_A           66 ADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERL  145 (313)
T ss_dssp             CHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTE
T ss_pred             CHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHh
Confidence            57788888876421100    01246899999999886    64  4599999999999997 32    68999999999


Q ss_pred             cCCcEEEEEecC
Q 024162           81 KPGGTILIYKKL   92 (271)
Q Consensus        81 KPGG~l~i~~~~   92 (271)
                      ||||.|++..+.
T Consensus       146 kpgG~li~~~~~  157 (313)
T 3bgv_A          146 SPGGYFIGTTPN  157 (313)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             CCCcEEEEecCC
Confidence            999999999876

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.15  E-value=7e-06  Score=70.00  Aligned_cols=94  Identities=13%  Similarity=0.045  Sum_probs=65.3

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEeccccccCC---------hHHHHHHHHHhccCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSSHELP---------GDQLLEEISRVLKPG   83 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~l~~~~---------~~~~L~ei~RvLKPG   83 (271)
                      .++.|++.++++...   ....++.++++|+..++  +++++||.|++.+...|..         ...++++++|+||||
T Consensus        70 ~s~~~l~~a~~~~~~---~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~Lkpg  146 (213)
T 2fca_A           70 LFKSVIVTAVQKVKD---SEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG  146 (213)
T ss_dssp             SCHHHHHHHHHHHHH---SCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred             echHHHHHHHHHHHH---cCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCC
Confidence            367788888776421   12246899999998876  7889999998866544332         268999999999999


Q ss_pred             cEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcch
Q 024162           84 GTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  118 (271)
Q Consensus        84 G~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v  118 (271)
                      |.|++.+...    ..   ...+...+..+||...
T Consensus       147 G~l~~~td~~----~~---~~~~~~~~~~~g~~~~  174 (213)
T 2fca_A          147 GSIHFKTDNR----GL---FEYSLKSFSEYGLLLT  174 (213)
T ss_dssp             CEEEEEESCH----HH---HHHHHHHHHHHTCEEE
T ss_pred             CEEEEEeCCH----HH---HHHHHHHHHHCCCccc
Confidence            9999987431    11   1234445666787543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.13  E-value=1.2e-05  Score=72.65  Aligned_cols=71  Identities=15%  Similarity=0.139  Sum_probs=54.5

Q ss_pred             HHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162           18 AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        18 ~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .|++.++++....  ....++.++.+|+.+ +++ .+||+|++..++|++.+   ..+|++++++|||||+|++.+..
T Consensus       201 ~~~~~a~~~~~~~--~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          201 GSLGVARDNLSSL--LAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             TCTHHHHHHTHHH--HHTTSEEEEESCTTT-CCC-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             HHHHHHHHHHhhc--CCCCcEEEecCCCCC-CCC-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            4455566553211  112468999999977 665 68999999999998876   48999999999999999999865

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.13  E-value=2.1e-06  Score=73.93  Aligned_cols=73  Identities=11%  Similarity=0.069  Sum_probs=60.6

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCC-----CceeEEEeccccccCC--h-HHHHHHHHHhccCCcEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVES-----FSIDTVLSISSSHELP--G-DQLLEEISRVLKPGGTI   86 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~-----~sfD~V~s~~~l~~~~--~-~~~L~ei~RvLKPGG~l   86 (271)
                      .++.|++.++++..      ..++.++++++.++++..     ..||+|++..++|+++  + ..++++++|+|||||+|
T Consensus        86 ~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  159 (245)
T 3ggd_A           86 VSKSALEIAAKENT------AANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAM  159 (245)
T ss_dssp             SCHHHHHHHHHHSC------CTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEE
T ss_pred             CCHHHHHHHHHhCc------ccCceEEECcccccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEE
Confidence            36789999988752      146899999999876543     3499999999999998  4 79999999999999999


Q ss_pred             EEEecCC
Q 024162           87 LIYKKLT   93 (271)
Q Consensus        87 ~i~~~~~   93 (271)
                      ++.++..
T Consensus       160 ~i~~~~~  166 (245)
T 3ggd_A          160 YLIELGT  166 (245)
T ss_dssp             EEEEECT
T ss_pred             EEEeCCc
Confidence            9998864

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.12  E-value=6.8e-06  Score=72.51  Aligned_cols=71  Identities=13%  Similarity=0.126  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      ++.|++.++++...    .+.++.++++++..+++ +++||+|++..++||++.   ..++++++|+|||||+|++...
T Consensus       151 s~~~~~~a~~~~~~----~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          151 NENSIAFLNETKEK----ENLNISTALYDINAANI-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             CHHHHHHHHHHHHH----TTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHH----cCCceEEEEeccccccc-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            67888888877422    12478999999999888 889999999999999864   6899999999999999877654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.11  E-value=3.4e-06  Score=75.45  Aligned_cols=56  Identities=20%  Similarity=0.363  Sum_probs=47.9

Q ss_pred             CCeEEEeccCCCCC-----CCCCceeEEEeccccccCC------h-HHHHHHHHHhccCCcEEEEEec
Q 024162           36 PQIITQASSLSQLP-----VESFSIDTVLSISSSHELP------G-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        36 ~~v~~~~~d~e~lp-----~~~~sfD~V~s~~~l~~~~------~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .+|.|.++++...+     +.+++||+|++..+++|++      . ..++++++|+|||||+|++...
T Consensus       154 ~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~  221 (292)
T 3g07_A          154 NNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQ  221 (292)
T ss_dssp             TTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             ccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            36899999987654     6789999999999988874      3 7899999999999999999754

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.10  E-value=2e-05  Score=67.10  Aligned_cols=92  Identities=18%  Similarity=0.223  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-CCCCCceeEEEeccccccCCh--------------------HHHHH
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-PVESFSIDTVLSISSSHELPG--------------------DQLLE   74 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~l~~~~~--------------------~~~L~   74 (271)
                      ++.|++.+++....    .+.++.++++|+..+ ++++++||+|++...+++...                    ..+++
T Consensus        88 s~~~~~~a~~~~~~----~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  163 (230)
T 3evz_A           88 DEEFFEYARRNIER----NNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLE  163 (230)
T ss_dssp             CHHHHHHHHHHHHH----TTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH----hCCCcEEEeCCchhhhhcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHH
Confidence            57788888876421    123788999997543 566789999999765544322                    67899


Q ss_pred             HHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcc
Q 024162           75 EISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  117 (271)
Q Consensus        75 ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~  117 (271)
                      ++.++|||||+|++.....      ......+...+..+||..
T Consensus       164 ~~~~~LkpgG~l~~~~~~~------~~~~~~~~~~l~~~g~~~  200 (230)
T 3evz_A          164 EAFDHLNPGGKVALYLPDK------EKLLNVIKERGIKLGYSV  200 (230)
T ss_dssp             HHGGGEEEEEEEEEEEESC------HHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHhCCCeEEEEEeccc------HhHHHHHHHHHHHcCCce
Confidence            9999999999999976542      112335667788899954

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.09  E-value=1.2e-05  Score=67.92  Aligned_cols=110  Identities=15%  Similarity=0.129  Sum_probs=68.8

Q ss_pred             EEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccc---c--ccCCh-HHHHHHHHHh
Q 024162            6 LALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISS---S--HELPG-DQLLEEISRV   79 (271)
Q Consensus         6 l~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~---l--~~~~~-~~~L~ei~Rv   79 (271)
                      ++.+|.+...+..+.+.++++..   .....++.+++++++++|+++++ |.|+....   .  |++++ ..++++++|+
T Consensus        54 v~gvD~s~~~l~~~~~~a~~~~~---~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~  129 (218)
T 3mq2_A           54 VVALDADKSRMEKISAKAAAKPA---KGGLPNLLYLWATAERLPPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAV  129 (218)
T ss_dssp             EEEEESCGGGGHHHHHHHTSCGG---GTCCTTEEEEECCSTTCCSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHT
T ss_pred             EEEEECCHHHHHHHHHHHHHhhh---hcCCCceEEEecchhhCCCCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHH
Confidence            44556555544444444444321   11224799999999999998877 88774332   2  24544 8899999999


Q ss_pred             ccCCcEEEEEecCCCC-----------cccHHHHHHHHHHHHHHcCCcchh
Q 024162           80 LKPGGTILIYKKLTSD-----------KGDVDKAISALEGKLLLAGFLDAQ  119 (271)
Q Consensus        80 LKPGG~l~i~~~~~~~-----------~~e~~~~~~~l~~~l~laGF~~v~  119 (271)
                      |||||+|++.......           ........+.+...+..+||...+
T Consensus       130 LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~  180 (218)
T 3mq2_A          130 CRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD  180 (218)
T ss_dssp             EEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred             cCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence            9999999996532110           001111223467778899997543

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.08  E-value=1.4e-05  Score=68.50  Aligned_cols=106  Identities=10%  Similarity=0.106  Sum_probs=66.5

Q ss_pred             EEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCC---CCCCCCceeEEEeccccccCCh-HHHHHHHHHhcc
Q 024162            6 LALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ---LPVESFSIDTVLSISSSHELPG-DQLLEEISRVLK   81 (271)
Q Consensus         6 l~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~---lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLK   81 (271)
                      ++..|.+...++.|++.++.+         .++.++++++..   +++.+++||+|++...  .... ..++.+++|+||
T Consensus       105 v~gvD~s~~~i~~~~~~a~~~---------~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~--~~~~~~~~~~~~~~~Lk  173 (233)
T 2ipx_A          105 VYAVEFSHRSGRDLINLAKKR---------TNIIPVIEDARHPHKYRMLIAMVDVIFADVA--QPDQTRIVALNAHTFLR  173 (233)
T ss_dssp             EEEECCCHHHHHHHHHHHHHC---------TTEEEECSCTTCGGGGGGGCCCEEEEEECCC--CTTHHHHHHHHHHHHEE
T ss_pred             EEEEECCHHHHHHHHHHhhcc---------CCeEEEEcccCChhhhcccCCcEEEEEEcCC--CccHHHHHHHHHHHHcC
Confidence            455565555445555555443         457899999987   5667789999998554  2222 556889999999


Q ss_pred             CCcEEEEEecCC--CCcccHHHHHHHHHHHHHHcCCcchhhhh
Q 024162           82 PGGTILIYKKLT--SDKGDVDKAISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus        82 PGG~l~i~~~~~--~~~~e~~~~~~~l~~~l~laGF~~v~~~~  122 (271)
                      |||+|++.....  .........+..-...|..+||..++...
T Consensus       174 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  216 (233)
T 2ipx_A          174 NGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLT  216 (233)
T ss_dssp             EEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEE
T ss_pred             CCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEe
Confidence            999999965431  01111111121223567788998766443

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.07  E-value=1e-05  Score=74.89  Aligned_cols=55  Identities=13%  Similarity=0.159  Sum_probs=47.9

Q ss_pred             CCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCC
Q 024162           36 PQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .++.++.+|+.+ |++.+  |+|++..++|++++   ..+|++++|+|||||+|++.+...
T Consensus       246 ~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  303 (368)
T 3reo_A          246 SGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYIL  303 (368)
T ss_dssp             TTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCC
T ss_pred             CCCEEEecCCCC-CCCCC--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            568999999987 77754  99999999999986   478999999999999999998653

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.07  E-value=5.4e-06  Score=70.92  Aligned_cols=85  Identities=12%  Similarity=0.124  Sum_probs=63.7

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccC-CCCCCC-CCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSL-SQLPVE-SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~-e~lp~~-~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.|++.++++.        .++.++++++ +.+|++ +++||+|++..     ....++++++|+|||||+|+.....
T Consensus        78 ~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~~~fD~v~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~  144 (226)
T 3m33_A           78 FSPELLKLARANA--------PHADVYEWNGKGELPAGLGAPFGLIVSRR-----GPTSVILRLPELAAPDAHFLYVGPR  144 (226)
T ss_dssp             SCHHHHHHHHHHC--------TTSEEEECCSCSSCCTTCCCCEEEEEEES-----CCSGGGGGHHHHEEEEEEEEEEESS
T ss_pred             CCHHHHHHHHHhC--------CCceEEEcchhhccCCcCCCCEEEEEeCC-----CHHHHHHHHHHHcCCCcEEEEeCCc
Confidence            3678899988873        4688999999 688998 89999999872     2267789999999999999933221


Q ss_pred             CCCcccHHHHHHHHHHHHHHcCCcchhh
Q 024162           93 TSDKGDVDKAISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        93 ~~~~~e~~~~~~~l~~~l~laGF~~v~~  120 (271)
                      . ..       ..+...+..+||..+..
T Consensus       145 ~-~~-------~~~~~~l~~~Gf~~~~~  164 (226)
T 3m33_A          145 L-NV-------PEVPERLAAVGWDIVAE  164 (226)
T ss_dssp             S-CC-------THHHHHHHHTTCEEEEE
T ss_pred             C-CH-------HHHHHHHHHCCCeEEEE
Confidence            1 11       14566788899987543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.05  E-value=3.1e-05  Score=66.41  Aligned_cols=98  Identities=17%  Similarity=0.183  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC----CCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEe
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ----LPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~----lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ++.|++.++++...     ..++.++.+++..    +++. ++||+|+...  ..... ..++++++|+|||||+|++..
T Consensus       107 s~~~~~~a~~~~~~-----~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~  178 (230)
T 1fbn_A          107 APRIMRELLDACAE-----RENIIPILGDANKPQEYANIV-EKVDVIYEDV--AQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             CHHHHHHHHHHTTT-----CTTEEEEECCTTCGGGGTTTS-CCEEEEEECC--CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHhhc-----CCCeEEEECCCCCcccccccC-ccEEEEEEec--CChhHHHHHHHHHHHhCCCCcEEEEEE
Confidence            57788888877522     1578999999988    7777 7899999321  11111 667999999999999999962


Q ss_pred             cCC--CCcccHHHH-HHHHHHHHHHcCCcchhhhh
Q 024162           91 KLT--SDKGDVDKA-ISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus        91 ~~~--~~~~e~~~~-~~~l~~~l~laGF~~v~~~~  122 (271)
                      ...  ......... .+.+. .+..+||..++...
T Consensus       179 ~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~  212 (230)
T 1fbn_A          179 KARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVD  212 (230)
T ss_dssp             EGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEE
T ss_pred             ecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEc
Confidence            110  111111111 23555 67788998765543

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.05  E-value=1.1e-05  Score=72.39  Aligned_cols=53  Identities=13%  Similarity=0.188  Sum_probs=47.3

Q ss_pred             CeEEEeccCCCCCCC-CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEE
Q 024162           37 QIITQASSLSQLPVE-SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        37 ~v~~~~~d~e~lp~~-~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~   89 (271)
                      .|.|.++++.+.|++ .+.||+|++.++++|+.+   ..++++++++|+|||.|++-
T Consensus       195 ~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          195 YVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             TEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             cCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            689999999887776 678999999999999875   68999999999999999974

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.04  E-value=7.7e-06  Score=71.43  Aligned_cols=66  Identities=26%  Similarity=0.358  Sum_probs=54.9

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      .++.|++.++++.        .++.+.+++++.+|+++++||+|++..+.      .++++++|+|||||+|++.++...
T Consensus       117 ~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~~~~~------~~l~~~~~~L~pgG~l~~~~~~~~  182 (269)
T 1p91_A          117 VSKVAIKAAAKRY--------PQVTFCVASSHRLPFSDTSMDAIIRIYAP------CKAEELARVVKPGGWVITATPGPR  182 (269)
T ss_dssp             SCHHHHHHHHHHC--------TTSEEEECCTTSCSBCTTCEEEEEEESCC------CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred             CCHHHHHHHHHhC--------CCcEEEEcchhhCCCCCCceeEEEEeCCh------hhHHHHHHhcCCCcEEEEEEcCHH
Confidence            3678888888775        45688999999999999999999986553      247999999999999999988754

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.04  E-value=3.5e-05  Score=67.24  Aligned_cols=86  Identities=7%  Similarity=-0.065  Sum_probs=58.7

Q ss_pred             EEEecCCcc--cHHHHHHHHHHhCchhhhcCCCCeEEEecc---CCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHh
Q 024162            6 LALSEDKIL--PVSAVLNAIRDLGDEAVEQCDPQIITQASS---LSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRV   79 (271)
Q Consensus         6 l~~td~~~~--~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d---~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~Rv   79 (271)
                      ++.+|.+..  .++.|++.++++....  ....++.+++++   ...+|+++++||+|++..+++|+++ ..+++.+.++
T Consensus        71 v~gvD~s~~~~~~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l  148 (275)
T 3bkx_A           71 VTGIDIASPDYGAPLTLGQAWNHLLAG--PLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNM  148 (275)
T ss_dssp             EEEECSSCTTCCSSSCHHHHHHHHHTS--TTGGGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHH
T ss_pred             EEEEECCccccccHHHHHHHHHHHHhc--CCCCceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHH
Confidence            344454433  2234677777663211  011368899988   5677888999999999999999987 5555555666


Q ss_pred             ccCCcEEEEEecCC
Q 024162           80 LKPGGTILIYKKLT   93 (271)
Q Consensus        80 LKPGG~l~i~~~~~   93 (271)
                      ++|||++++.++..
T Consensus       149 ~~~gG~l~~~~~~~  162 (275)
T 3bkx_A          149 AAVCDHVDVAEWSM  162 (275)
T ss_dssp             TTTCSEEEEEEECS
T ss_pred             hCCCCEEEEEEecC
Confidence            66699999998764

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.03  E-value=2.8e-05  Score=66.40  Aligned_cols=106  Identities=15%  Similarity=0.166  Sum_probs=63.3

Q ss_pred             EEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC----CCCCCceeEEEeccccccCCh-HHHHHHHHHh
Q 024162            5 VLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL----PVESFSIDTVLSISSSHELPG-DQLLEEISRV   79 (271)
Q Consensus         5 vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l----p~~~~sfD~V~s~~~l~~~~~-~~~L~ei~Rv   79 (271)
                      -++..|.+...++.|.+.++.+         .++.++++|+...    ++. ++||+|++... +. .. ..++++++|+
T Consensus        83 ~V~gvD~s~~~l~~~~~~a~~~---------~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~~-~~-~~~~~~l~~~~r~  150 (210)
T 1nt2_A           83 IIYAVEYSAKPFEKLLELVRER---------NNIIPLLFDASKPWKYSGIV-EKVDLIYQDIA-QK-NQIEILKANAEFF  150 (210)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHC---------SSEEEECSCTTCGGGTTTTC-CCEEEEEECCC-ST-THHHHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHhcC---------CCeEEEEcCCCCchhhcccc-cceeEEEEecc-Ch-hHHHHHHHHHHHH
Confidence            4556666655555555555432         3577888888763    555 79999998742 22 22 4569999999


Q ss_pred             ccCCcEEEEEecCC--CCcccHHHHHHHHHHHHHHcCCcchhhhhh
Q 024162           80 LKPGGTILIYKKLT--SDKGDVDKAISALEGKLLLAGFLDAQRIQL  123 (271)
Q Consensus        80 LKPGG~l~i~~~~~--~~~~e~~~~~~~l~~~l~laGF~~v~~~~~  123 (271)
                      |||||+|++.....  +...............+..+ |..++....
T Consensus       151 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~  195 (210)
T 1nt2_A          151 LKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSL  195 (210)
T ss_dssp             EEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred             hCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeeecC
Confidence            99999999984221  01111222221112236666 877666544

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.02  E-value=8.4e-06  Score=67.06  Aligned_cols=75  Identities=13%  Similarity=0.016  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-CCCCceeEEEecccc-cc-------CC-h-HHHHHHHHHhccCCc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSISSS-HE-------LP-G-DQLLEEISRVLKPGG   84 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-~~~~sfD~V~s~~~l-~~-------~~-~-~~~L~ei~RvLKPGG   84 (271)
                      ++.|++.++++....   ...++.+++++++.++ +.+++||+|++.... ++       .. . ..++++++|+|||||
T Consensus        53 s~~~l~~a~~~~~~~---~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  129 (185)
T 3mti_A           53 QEQALGKTSQRLSDL---GIENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGG  129 (185)
T ss_dssp             CHHHHHHHHHHHHHH---TCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEE
T ss_pred             CHHHHHHHHHHHHHc---CCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCc
Confidence            678888888875321   1156888888887764 557899999876322 21       11 2 578899999999999


Q ss_pred             EEEEEecCC
Q 024162           85 TILIYKKLT   93 (271)
Q Consensus        85 ~l~i~~~~~   93 (271)
                      +|++..+..
T Consensus       130 ~l~i~~~~~  138 (185)
T 3mti_A          130 RLAIMIYYG  138 (185)
T ss_dssp             EEEEEEC--
T ss_pred             EEEEEEeCC
Confidence            999988753

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.98  E-value=3.7e-05  Score=71.00  Aligned_cols=54  Identities=20%  Similarity=0.282  Sum_probs=47.9

Q ss_pred             CCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162           36 PQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.++.+|+.+ |++.+  |+|++..++|++++   ..+|++++|+|||||+|++.+..
T Consensus       244 ~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~  300 (364)
T 3p9c_A          244 PGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI  300 (364)
T ss_dssp             TTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             CCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            568999999987 88765  99999999999976   57899999999999999999865

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.97  E-value=1e-05  Score=69.81  Aligned_cols=93  Identities=15%  Similarity=0.039  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      ++.|++.+++......  ...++.+..+++.+.++++++||+|++.     +++ ..++.++.++|||||++++..+.. 
T Consensus       130 ~~~~~~~a~~~~~~~~--g~~~v~~~~~d~~~~~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~-  201 (258)
T 2pwy_A          130 RPHHLAQAERNVRAFW--QVENVRFHLGKLEEAELEEAAYDGVALD-----LMEPWKVLEKAALALKPDRFLVAYLPNI-  201 (258)
T ss_dssp             CHHHHHHHHHHHHHHC--CCCCEEEEESCGGGCCCCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEESCH-
T ss_pred             CHHHHHHHHHHHHHhc--CCCCEEEEECchhhcCCCCCCcCEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEeCCH-
Confidence            5677777777631100  1256899999999888888999999983     233 578999999999999999998652 


Q ss_pred             CcccHHHHHHHHHHHHHHcCCcchhhhh
Q 024162           95 DKGDVDKAISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus        95 ~~~e~~~~~~~l~~~l~laGF~~v~~~~  122 (271)
                            .....+...+..+||..++..+
T Consensus       202 ------~~~~~~~~~l~~~gf~~~~~~~  223 (258)
T 2pwy_A          202 ------TQVLELVRAAEAHPFRLERVLE  223 (258)
T ss_dssp             ------HHHHHHHHHHTTTTEEEEEEEE
T ss_pred             ------HHHHHHHHHHHHCCCceEEEEE
Confidence                  1123455566679998776554

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.92  E-value=6.5e-06  Score=70.83  Aligned_cols=75  Identities=12%  Similarity=0.034  Sum_probs=56.3

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-C--CCCCceeEEEeccccccCCh---------HHHHHHHHHhccC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-P--VESFSIDTVLSISSSHELPG---------DQLLEEISRVLKP   82 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p--~~~~sfD~V~s~~~l~~~~~---------~~~L~ei~RvLKP   82 (271)
                      .+..|++.++++...   ....++.++++|+..+ +  +++++||.|++++...|...         ..++++++|+|||
T Consensus        66 ~s~~~l~~a~~~~~~---~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~Lkp  142 (218)
T 3dxy_A           66 VHSPGVGACLASAHE---EGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQL  142 (218)
T ss_dssp             SCHHHHHHHHHHHHH---TTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEE
T ss_pred             ecHHHHHHHHHHHHH---hCCCcEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCC
Confidence            367788888776421   1224689999998874 4  78999999999865544332         3699999999999


Q ss_pred             CcEEEEEecC
Q 024162           83 GGTILIYKKL   92 (271)
Q Consensus        83 GG~l~i~~~~   92 (271)
                      ||+|++.+..
T Consensus       143 GG~l~i~td~  152 (218)
T 3dxy_A          143 GGVFHMATDW  152 (218)
T ss_dssp             EEEEEEEESC
T ss_pred             CcEEEEEeCC
Confidence            9999998754

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.92  E-value=1.4e-05  Score=72.15  Aligned_cols=103  Identities=16%  Similarity=0.163  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHhCch-hhhcCCCCeEEEeccCCCCCC--CCCceeEEEeccccccCCh-----HHHHHHHHHhccCCcEEE
Q 024162           16 VSAVLNAIRDLGDE-AVEQCDPQIITQASSLSQLPV--ESFSIDTVLSISSSHELPG-----DQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        16 s~~mv~~ar~~~~~-~~~~~~~~v~~~~~d~e~lp~--~~~sfD~V~s~~~l~~~~~-----~~~L~ei~RvLKPGG~l~   87 (271)
                      ++.|++.++++... .......++.++.+|+..++.  .+++||+|++....++.+.     ..++++++|+|||||+|+
T Consensus       128 d~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv  207 (304)
T 3bwc_A          128 DGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICC  207 (304)
T ss_dssp             CHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEE
T ss_pred             CHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEE
Confidence            67888888887521 011234678999999887654  4789999999665444332     689999999999999999


Q ss_pred             EEecCCCCcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           88 IYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        88 i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                      +.......  . ......+...+..+||..+...
T Consensus       208 ~~~~~~~~--~-~~~~~~~~~~l~~~GF~~v~~~  238 (304)
T 3bwc_A          208 NQGESIWL--D-LELIEKMSRFIRETGFASVQYA  238 (304)
T ss_dssp             EEECCTTT--C-HHHHHHHHHHHHHHTCSEEEEE
T ss_pred             EecCCccc--c-hHHHHHHHHHHHhCCCCcEEEE
Confidence            98654211  1 1223466677888999876543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.92  E-value=2.1e-05  Score=68.98  Aligned_cols=96  Identities=13%  Similarity=0.005  Sum_probs=66.2

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCC---CCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVE---SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~---~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .+..|++.+++.....   ...+|.++++++++++..   +++||+|++....   +-..++.+++++|||||+|++...
T Consensus       112 ~s~~~~~~a~~~~~~~---~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~~---~~~~ll~~~~~~LkpgG~l~~~~g  185 (249)
T 3g89_A          112 ATRKKVAFVERAIEVL---GLKGARALWGRAEVLAREAGHREAYARAVARAVA---PLCVLSELLLPFLEVGGAAVAMKG  185 (249)
T ss_dssp             SCHHHHHHHHHHHHHH---TCSSEEEEECCHHHHTTSTTTTTCEEEEEEESSC---CHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHh---CCCceEEEECcHHHhhcccccCCCceEEEECCcC---CHHHHHHHHHHHcCCCeEEEEEeC
Confidence            3677888888764221   113589999999988754   4899999996431   227899999999999999998774


Q ss_pred             CCCCcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           92 LTSDKGDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        92 ~~~~~~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                      .. .    ......+...+...||...+..
T Consensus       186 ~~-~----~~e~~~~~~~l~~~G~~~~~~~  210 (249)
T 3g89_A          186 PR-V----EEELAPLPPALERLGGRLGEVL  210 (249)
T ss_dssp             SC-C----HHHHTTHHHHHHHHTEEEEEEE
T ss_pred             CC-c----HHHHHHHHHHHHHcCCeEEEEE
Confidence            31 1    1122345566777898765543

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.91  E-value=3e-05  Score=67.40  Aligned_cols=78  Identities=17%  Similarity=0.155  Sum_probs=55.0

Q ss_pred             cHHHHHHHHHHhCchh--h-hcCCCCeEEEeccCCC-CC--CCCCceeEEEeccccccCC---------hHHHHHHHHHh
Q 024162           15 PVSAVLNAIRDLGDEA--V-EQCDPQIITQASSLSQ-LP--VESFSIDTVLSISSSHELP---------GDQLLEEISRV   79 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~--~-~~~~~~v~~~~~d~e~-lp--~~~~sfD~V~s~~~l~~~~---------~~~~L~ei~Rv   79 (271)
                      .++.|++.++++....  . .....++.++++++.. ++  +++++||.|++.+...|..         ...++++++|+
T Consensus        78 is~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~  157 (235)
T 3ckk_A           78 IRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYV  157 (235)
T ss_dssp             SCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEEEEEESCC-----------CCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence            3677887777653210  0 0123579999999986 77  8899999999866544422         15799999999


Q ss_pred             ccCCcEEEEEecC
Q 024162           80 LKPGGTILIYKKL   92 (271)
Q Consensus        80 LKPGG~l~i~~~~   92 (271)
                      |||||.|++....
T Consensus       158 LkpGG~l~~~td~  170 (235)
T 3ckk_A          158 LRVGGLVYTITDV  170 (235)
T ss_dssp             EEEEEEEEEEESC
T ss_pred             CCCCCEEEEEeCC
Confidence            9999999998654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.90  E-value=1.5e-05  Score=70.35  Aligned_cols=90  Identities=17%  Similarity=0.148  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHhCchhhhc-CCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           16 VSAVLNAIRDLGDEAVEQ-CDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~-~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      ++.+++.++++...   . ...++.+.++|+.. ++++++||+|++.     +++ ..+++++.++|||||+|++.+...
T Consensus       144 s~~~~~~a~~~~~~---~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~~  214 (275)
T 1yb2_A          144 DEDNLKKAMDNLSE---FYDIGNVRTSRSDIAD-FISDQMYDAVIAD-----IPDPWNHVQKIASMMKPGSVATFYLPNF  214 (275)
T ss_dssp             CHHHHHHHHHHHHT---TSCCTTEEEECSCTTT-CCCSCCEEEEEEC-----CSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             CHHHHHHHHHHHHh---cCCCCcEEEEECchhc-cCcCCCccEEEEc-----CcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            56777777776411   1 12468999999987 6778899999982     333 688999999999999999998652


Q ss_pred             CCcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           94 SDKGDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        94 ~~~~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                             .....+...+..+||..++..
T Consensus       215 -------~~~~~~~~~l~~~Gf~~~~~~  235 (275)
T 1yb2_A          215 -------DQSEKTVLSLSASGMHHLETV  235 (275)
T ss_dssp             -------HHHHHHHHHSGGGTEEEEEEE
T ss_pred             -------HHHHHHHHHHHHCCCeEEEEE
Confidence                   112345566777899876554

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.89  E-value=4.1e-05  Score=62.05  Aligned_cols=88  Identities=9%  Similarity=-0.043  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCC-CCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLS-QLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e-~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      ++.|++.++++....  ....++ ++.+++. .++...++||+|++...+++   ..++++++|+|||||+|++..... 
T Consensus        58 ~~~~~~~a~~~~~~~--~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~-  130 (178)
T 3hm2_A           58 SEERRERILSNAINL--GVSDRI-AVQQGAPRAFDDVPDNPDVIFIGGGLTA---PGVFAAAWKRLPVGGRLVANAVTV-  130 (178)
T ss_dssp             CHHHHHHHHHHHHTT--TCTTSE-EEECCTTGGGGGCCSCCSEEEECC-TTC---TTHHHHHHHTCCTTCEEEEEECSH-
T ss_pred             CHHHHHHHHHHHHHh--CCCCCE-EEecchHhhhhccCCCCCEEEECCcccH---HHHHHHHHHhcCCCCEEEEEeecc-
Confidence            567888888764211  111257 7777774 44443389999999887776   678999999999999999988652 


Q ss_pred             CcccHHHHHHHHHHHHHHcCCc
Q 024162           95 DKGDVDKAISALEGKLLLAGFL  116 (271)
Q Consensus        95 ~~~e~~~~~~~l~~~l~laGF~  116 (271)
                            .....+...+...|+.
T Consensus       131 ------~~~~~~~~~~~~~~~~  146 (178)
T 3hm2_A          131 ------ESEQMLWALRKQFGGT  146 (178)
T ss_dssp             ------HHHHHHHHHHHHHCCE
T ss_pred             ------ccHHHHHHHHHHcCCe
Confidence                  1112344455566654

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.86  E-value=9e-05  Score=64.69  Aligned_cols=95  Identities=11%  Similarity=0.038  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEeccccccC--------------------Ch-HHH
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSSHEL--------------------PG-DQL   72 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~l~~~--------------------~~-~~~   72 (271)
                      ++.|++.+++.....  ....++.++++|+.+++  ++.++||+|+++..++..                    .+ ..+
T Consensus        81 ~~~~~~~a~~n~~~~--~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  158 (259)
T 3lpm_A           81 QERLADMAKRSVAYN--QLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDT  158 (259)
T ss_dssp             SHHHHHHHHHHHHHT--TCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHH
T ss_pred             CHHHHHHHHHHHHHC--CCcccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHH
Confidence            567778887764211  12236899999998876  568899999996443222                    11 579


Q ss_pred             HHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhh
Q 024162           73 LEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        73 L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~  120 (271)
                      ++++.++|||||+|++.....    ...    .+...+...||.....
T Consensus       159 l~~~~~~LkpgG~l~~~~~~~----~~~----~~~~~l~~~~~~~~~~  198 (259)
T 3lpm_A          159 IRVAASLLKQGGKANFVHRPE----RLL----DIIDIMRKYRLEPKRI  198 (259)
T ss_dssp             HHHHHHHEEEEEEEEEEECTT----THH----HHHHHHHHTTEEEEEE
T ss_pred             HHHHHHHccCCcEEEEEEcHH----HHH----HHHHHHHHCCCceEEE
Confidence            999999999999999975431    222    4455677778876543

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.85  E-value=2.9e-05  Score=66.83  Aligned_cols=72  Identities=17%  Similarity=0.222  Sum_probs=55.4

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecc-ccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS-SSHELPG---DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~-~l~~~~~---~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      .++.|++.++++...    .+.++.++++++.+++++ ++||+|++.. .+++++.   ..++++++++|||||.|++..
T Consensus        71 ~s~~~l~~a~~~~~~----~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A           71 LHEEMLRVARRKAKE----RNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             SCHHHHHHHHHHHHH----TTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHh----cCCceEEEECChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence            367888888887421    224689999999998875 6899999864 4455542   789999999999999998865


Q ss_pred             c
Q 024162           91 K   91 (271)
Q Consensus        91 ~   91 (271)
                      +
T Consensus       146 ~  146 (252)
T 1wzn_A          146 P  146 (252)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=97.85  E-value=3.4e-05  Score=78.70  Aligned_cols=76  Identities=7%  Similarity=0.037  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHhCchhh---hcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEE
Q 024162           16 VSAVLNAIRDLGDEAV---EQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~---~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~   89 (271)
                      ++.|++.|+++.+...   .....++.++++|+..+++.+++||+|++..+++|+++   ..++++++|+|||| .+++.
T Consensus       755 S~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIIS  833 (950)
T 3htx_A          755 SPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVS  833 (950)
T ss_dssp             CHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEE
T ss_pred             CHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEE
Confidence            6788888887532110   11224799999999999999999999999999999987   35899999999999 88888


Q ss_pred             ecC
Q 024162           90 KKL   92 (271)
Q Consensus        90 ~~~   92 (271)
                      ++.
T Consensus       834 TPN  836 (950)
T 3htx_A          834 TPN  836 (950)
T ss_dssp             ECB
T ss_pred             ecC
Confidence            765

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.85  E-value=2e-05  Score=70.80  Aligned_cols=76  Identities=11%  Similarity=0.048  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC------CCCCcee-----EEEeccccccCCh----HHHHHHHHHhc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP------VESFSID-----TVLSISSSHELPG----DQLLEEISRVL   80 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp------~~~~sfD-----~V~s~~~l~~~~~----~~~L~ei~RvL   80 (271)
                      ++.|++.+|++...   ....++.|+++|+.+++      ...++||     +|+++.++||+++    ..++++++++|
T Consensus       114 sp~mLa~Ar~~l~~---~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L  190 (277)
T 3giw_A          114 DPIVLTLSQGLLAS---TPEGRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPL  190 (277)
T ss_dssp             CHHHHHTTHHHHCC---CSSSEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTS
T ss_pred             ChHHHHHHHHHhcc---CCCCcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhC
Confidence            67899999887421   11246899999998862      1135566     6888999999987    47999999999


Q ss_pred             cCCcEEEEEecCCC
Q 024162           81 KPGGTILIYKKLTS   94 (271)
Q Consensus        81 KPGG~l~i~~~~~~   94 (271)
                      +|||+|++++....
T Consensus       191 ~PGG~Lvls~~~~d  204 (277)
T 3giw_A          191 PSGSYLAMSIGTAE  204 (277)
T ss_dssp             CTTCEEEEEEECCT
T ss_pred             CCCcEEEEEeccCC
Confidence            99999999987653

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.83  E-value=1.7e-05  Score=65.66  Aligned_cols=75  Identities=11%  Similarity=0.054  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEeccccccC-Ch-HHHHHHHHH--hccCCcEEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSSHEL-PG-DQLLEEISR--VLKPGGTILIY   89 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~l~~~-~~-~~~L~ei~R--vLKPGG~l~i~   89 (271)
                      ++.|++.++++....   ...++.++++|+.+++  +++++||+|++...+++. .. ..++.++.+  +|||||+|++.
T Consensus        76 ~~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~  152 (189)
T 3p9n_A           76 DQRSAAVIARNIEAL---GLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVE  152 (189)
T ss_dssp             CHHHHHHHHHHHHHH---TCSCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEE
T ss_pred             CHHHHHHHHHHHHHc---CCCceEEEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEE
Confidence            578888888774221   1146899999998764  457899999998877765 34 889999999  99999999998


Q ss_pred             ecCC
Q 024162           90 KKLT   93 (271)
Q Consensus        90 ~~~~   93 (271)
                      ....
T Consensus       153 ~~~~  156 (189)
T 3p9n_A          153 RATT  156 (189)
T ss_dssp             EETT
T ss_pred             ecCC
Confidence            7653

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.81  E-value=6.5e-06  Score=77.81  Aligned_cols=56  Identities=18%  Similarity=0.136  Sum_probs=49.0

Q ss_pred             CCeEEEeccCCCCCCC------CCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           36 PQIITQASSLSQLPVE------SFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~------~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .+|.|+++|+.++|+.      +++||+|++.. .|++.+ ..+|++++|+|||||+|++.++.
T Consensus       264 ~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          264 LRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             CCcEEEEecccccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            5799999999999987      78999999864 455555 88999999999999999999875

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.80  E-value=3.3e-05  Score=61.77  Aligned_cols=58  Identities=17%  Similarity=0.139  Sum_probs=49.0

Q ss_pred             CCeEEEeccCCCCC--------CCCCceeEEEeccccccCCh------------HHHHHHHHHhccCCcEEEEEecCC
Q 024162           36 PQIITQASSLSQLP--------VESFSIDTVLSISSSHELPG------------DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        36 ~~v~~~~~d~e~lp--------~~~~sfD~V~s~~~l~~~~~------------~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .++.+.++++.+.+        +++++||+|++...+++...            ..++++++++|||||++++..+..
T Consensus        62 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A           62 VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            45788899998887        78889999999887776643            488999999999999999988764

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.79  E-value=4.6e-05  Score=65.91  Aligned_cols=93  Identities=18%  Similarity=0.258  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD   95 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~   95 (271)
                      ++.|++.++++....  ....++.+.++|+.+. +++++||+|++...    ....++++++++|||||++++.....  
T Consensus       127 ~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~-~~~~~~D~v~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~--  197 (255)
T 3mb5_A          127 REDFAKLAWENIKWA--GFDDRVTIKLKDIYEG-IEEENVDHVILDLP----QPERVVEHAAKALKPGGFFVAYTPCS--  197 (255)
T ss_dssp             CHHHHHHHHHHHHHH--TCTTTEEEECSCGGGC-CCCCSEEEEEECSS----CGGGGHHHHHHHEEEEEEEEEEESSH--
T ss_pred             CHHHHHHHHHHHHHc--CCCCceEEEECchhhc-cCCCCcCEEEECCC----CHHHHHHHHHHHcCCCCEEEEEECCH--
Confidence            567777777764211  1123489999999854 77889999998421    22678999999999999999987652  


Q ss_pred             cccHHHHHHHHHHHHHHcC--Ccchhhhh
Q 024162           96 KGDVDKAISALEGKLLLAG--FLDAQRIQ  122 (271)
Q Consensus        96 ~~e~~~~~~~l~~~l~laG--F~~v~~~~  122 (271)
                           ...+.+...+..+|  |..++..+
T Consensus       198 -----~~~~~~~~~l~~~g~~f~~~~~~e  221 (255)
T 3mb5_A          198 -----NQVMRLHEKLREFKDYFMKPRTIN  221 (255)
T ss_dssp             -----HHHHHHHHHHHHTGGGBSCCEEEC
T ss_pred             -----HHHHHHHHHHHHcCCCccccEEEE
Confidence                 12235566788899  98876654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.78  E-value=0.00013  Score=61.73  Aligned_cols=88  Identities=11%  Similarity=-0.003  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCC-CeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~-~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      ++.|++.++++....   ... ++.++++++.+.......||+|++...+   ... ++++++|+|||||+|++..... 
T Consensus        86 s~~~~~~a~~~~~~~---g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~---~~~-~l~~~~~~LkpgG~lv~~~~~~-  157 (204)
T 3njr_A           86 RADRIENIQKNIDTY---GLSPRMRAVQGTAPAALADLPLPEAVFIGGGG---SQA-LYDRLWEWLAPGTRIVANAVTL-  157 (204)
T ss_dssp             CHHHHHHHHHHHHHT---TCTTTEEEEESCTTGGGTTSCCCSEEEECSCC---CHH-HHHHHHHHSCTTCEEEEEECSH-
T ss_pred             CHHHHHHHHHHHHHc---CCCCCEEEEeCchhhhcccCCCCCEEEECCcc---cHH-HHHHHHHhcCCCcEEEEEecCc-
Confidence            578888888764211   113 6899999998743334679999986533   335 9999999999999999988652 


Q ss_pred             CcccHHHHHHHHHHHHHHcCCcc
Q 024162           95 DKGDVDKAISALEGKLLLAGFLD  117 (271)
Q Consensus        95 ~~~e~~~~~~~l~~~l~laGF~~  117 (271)
                            .....+...+...||..
T Consensus       158 ------~~~~~~~~~l~~~g~~i  174 (204)
T 3njr_A          158 ------ESETLLTQLHARHGGQL  174 (204)
T ss_dssp             ------HHHHHHHHHHHHHCSEE
T ss_pred             ------ccHHHHHHHHHhCCCcE
Confidence                  12234556677777554

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.78  E-value=3.3e-05  Score=70.64  Aligned_cols=53  Identities=15%  Similarity=0.258  Sum_probs=46.6

Q ss_pred             CeEEEeccCCCCCCCCCceeEEEeccccccCCh-H--HHHHHHHHhccC---CcEEEEEecC
Q 024162           37 QIITQASSLSQLPVESFSIDTVLSISSSHELPG-D--QLLEEISRVLKP---GGTILIYKKL   92 (271)
Q Consensus        37 ~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~--~~L~ei~RvLKP---GG~l~i~~~~   92 (271)
                      ++.++.+|+.. +++.  ||+|++..++|++++ .  .+|++++|+|||   ||+|++.+..
T Consensus       232 ~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  290 (352)
T 1fp2_A          232 NLTYVGGDMFT-SIPN--ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV  290 (352)
T ss_dssp             TEEEEECCTTT-CCCC--CSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             CcEEEeccccC-CCCC--ccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence            48999999966 6653  999999999999987 4  899999999999   9999999864

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.77  E-value=7e-05  Score=62.05  Aligned_cols=76  Identities=11%  Similarity=0.071  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-CCCCceeEEEecccc-----ccC-C---h-HHHHHHHHHhccCCc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSISSS-----HEL-P---G-DQLLEEISRVLKPGG   84 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-~~~~sfD~V~s~~~l-----~~~-~---~-~~~L~ei~RvLKPGG   84 (271)
                      ++.|++.++++....  ....++.++++|++.++ +.+++||+|++...+     +++ .   + ..+++++.|+|||||
T Consensus        56 s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG  133 (197)
T 3eey_A           56 QDKAIANTTKKLTDL--NLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGG  133 (197)
T ss_dssp             CHHHHHHHHHHHHHT--TCGGGEEEECSCGGGGGGTCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEE
T ss_pred             CHHHHHHHHHHHHHc--CCCCCeEEEECCHHHHhhhccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCC
Confidence            567788887764211  01146899999998886 667899999986543     111 1   2 579999999999999


Q ss_pred             EEEEEecCC
Q 024162           85 TILIYKKLT   93 (271)
Q Consensus        85 ~l~i~~~~~   93 (271)
                      ++++..+..
T Consensus       134 ~l~~~~~~~  142 (197)
T 3eey_A          134 IITVVIYYG  142 (197)
T ss_dssp             EEEEEECCB
T ss_pred             EEEEEEccC
Confidence            999998653

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.76  E-value=4.2e-05  Score=64.09  Aligned_cols=69  Identities=13%  Similarity=0.083  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.++++...   ....++.+..+++...+...++||+|++...++++++     +++++|||||+|++....
T Consensus       108 ~~~~~~~a~~~~~~---~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~-----~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          108 IKGLQWQARRRLKN---LDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPT-----ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             CHHHHHHHHHHHHH---TTCCSEEEEESCGGGCCGGGCCEEEEEESSBCSSCCT-----HHHHTEEEEEEEEEEECS
T ss_pred             CHHHHHHHHHHHHH---cCCCceEEEECCcccCCccCCCccEEEEccchhhhhH-----HHHHhcccCcEEEEEEcC
Confidence            57888888876421   1124689999999887777889999999988888864     689999999999998765

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.76  E-value=6.2e-05  Score=61.27  Aligned_cols=93  Identities=19%  Similarity=0.180  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCC-CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVES-FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~-~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      ++.+++.++++....  ....++.+..+++.. +++. ++||+|++...++++  ..++++++++|+|||++++..... 
T Consensus        64 ~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~--~~~l~~~~~~l~~gG~l~~~~~~~-  137 (192)
T 1l3i_A           64 NPEAISTTEMNLQRH--GLGDNVTLMEGDAPE-ALCKIPDIDIAVVGGSGGEL--QEILRIIKDKLKPGGRIIVTAILL-  137 (192)
T ss_dssp             CHHHHHHHHHHHHHT--TCCTTEEEEESCHHH-HHTTSCCEEEEEESCCTTCH--HHHHHHHHHTEEEEEEEEEEECBH-
T ss_pred             CHHHHHHHHHHHHHc--CCCcceEEEecCHHH-hcccCCCCCEEEECCchHHH--HHHHHHHHHhcCCCcEEEEEecCc-
Confidence            567777777753211  111468888888866 3333 589999997665432  789999999999999999988652 


Q ss_pred             CcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           95 DKGDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        95 ~~~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                            .....+...+...|| .++..
T Consensus       138 ------~~~~~~~~~l~~~g~-~~~~~  157 (192)
T 1l3i_A          138 ------ETKFEAMECLRDLGF-DVNIT  157 (192)
T ss_dssp             ------HHHHHHHHHHHHTTC-CCEEE
T ss_pred             ------chHHHHHHHHHHCCC-ceEEE
Confidence                  122355667888999 54443

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.75  E-value=6.5e-05  Score=65.80  Aligned_cols=92  Identities=16%  Similarity=0.105  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD   95 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~   95 (271)
                      ++.+++.++++...    .+..+.+.++++... +++++||+|+++...++  -..++.+++++|||||+|+++..... 
T Consensus       151 ~~~~v~~a~~n~~~----~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~~--~~~~l~~~~~~LkpgG~lils~~~~~-  222 (254)
T 2nxc_A          151 DPMVLPQAEANAKR----NGVRPRFLEGSLEAA-LPFGPFDLLVANLYAEL--HAALAPRYREALVPGGRALLTGILKD-  222 (254)
T ss_dssp             CGGGHHHHHHHHHH----TTCCCEEEESCHHHH-GGGCCEEEEEEECCHHH--HHHHHHHHHHHEEEEEEEEEEEEEGG-
T ss_pred             CHHHHHHHHHHHHH----cCCcEEEEECChhhc-CcCCCCCEEEECCcHHH--HHHHHHHHHHHcCCCCEEEEEeeccC-
Confidence            34555666655311    112278888887652 55679999998654332  26889999999999999999876521 


Q ss_pred             cccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           96 KGDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        96 ~~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                        .    ...+...+..+||..++..
T Consensus       223 --~----~~~v~~~l~~~Gf~~~~~~  242 (254)
T 2nxc_A          223 --R----APLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             --G----HHHHHHHHHHTTCEEEEEE
T ss_pred             --C----HHHHHHHHHHCCCEEEEEe
Confidence              1    2356677888999876554

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.74  E-value=6.3e-05  Score=65.91  Aligned_cols=96  Identities=16%  Similarity=0.145  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD   95 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~   95 (271)
                      ++.+++.+++...........++.++++|+.+.++++++||+|++...    ....++.++.++|||||+|++.....  
T Consensus       133 ~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~--  206 (280)
T 1i9g_A          133 RADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDML----APWEVLDAVSRLLVAGGVLMVYVATV--  206 (280)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEESS----CGGGGHHHHHHHEEEEEEEEEEESSH--
T ss_pred             CHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEECCc----CHHHHHHHHHHhCCCCCEEEEEeCCH--
Confidence            567777777763210000125689999999998888889999998322    22578999999999999999998652  


Q ss_pred             cccHHHHHHHHHHHHHH-cCCcchhhhh
Q 024162           96 KGDVDKAISALEGKLLL-AGFLDAQRIQ  122 (271)
Q Consensus        96 ~~e~~~~~~~l~~~l~l-aGF~~v~~~~  122 (271)
                       ..    ...+...+.. .||..++.++
T Consensus       207 -~~----~~~~~~~l~~~~~f~~~~~~~  229 (280)
T 1i9g_A          207 -TQ----LSRIVEALRAKQCWTEPRAWE  229 (280)
T ss_dssp             -HH----HHHHHHHHHHHSSBCCCEEEC
T ss_pred             -HH----HHHHHHHHHhcCCcCCcEEEE
Confidence             11    1233344444 7898765553

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.73  E-value=3.7e-05  Score=70.85  Aligned_cols=54  Identities=17%  Similarity=0.314  Sum_probs=47.6

Q ss_pred             CCeEEEeccCCCCCCCCCceeEEEeccccccCCh-H--HHHHHHHHhccCCcEEEEEecC
Q 024162           36 PQIITQASSLSQLPVESFSIDTVLSISSSHELPG-D--QLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~--~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.++.+|+.. +++.  ||+|++..++|++++ .  .+|++++|+|||||+|++.+..
T Consensus       252 ~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~  308 (372)
T 1fp1_D          252 SGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI  308 (372)
T ss_dssp             TTEEEEECCTTT-CCCC--EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCEEEeCCccc-CCCC--CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            458999999987 7765  999999999999987 4  8999999999999999998754

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=97.72  E-value=0.00029  Score=61.49  Aligned_cols=119  Identities=18%  Similarity=0.059  Sum_probs=71.1

Q ss_pred             cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC---CCCCceeEEEeccccccCCh-HH-HHHHHHH
Q 024162            4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP---VESFSIDTVLSISSSHELPG-DQ-LLEEISR   78 (271)
Q Consensus         4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp---~~~~sfD~V~s~~~l~~~~~-~~-~L~ei~R   78 (271)
                      +.++..|.+....+.+++.++++         .++.++++|+....   ...++||+|++..+.   ++ .. ++..+.+
T Consensus       102 G~V~avD~s~~~l~~l~~~a~~r---------~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~  169 (232)
T 3id6_C          102 GKAYGVEFSPRVVRELLLVAQRR---------PNIFPLLADARFPQSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKF  169 (232)
T ss_dssp             SEEEEEECCHHHHHHHHHHHHHC---------TTEEEEECCTTCGGGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHH
T ss_pred             CEEEEEECcHHHHHHHHHHhhhc---------CCeEEEEcccccchhhhccccceEEEEecCCC---hhHHHHHHHHHHH
Confidence            45666776655555555555433         46888999987643   124689999987543   33 34 4455666


Q ss_pred             hccCCcEEEEEecCCC---C--cccHHHHHHHHHHHHHHcCCcchhhhhhccccCcceeEEEEEeeC
Q 024162           79 VLKPGGTILIYKKLTS---D--KGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKK  140 (271)
Q Consensus        79 vLKPGG~l~i~~~~~~---~--~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~~~~~i~a~K  140 (271)
                      +|||||+|+++.....   +  ..+.   .+.....|..+||..++.....|+..   .++.+.+++
T Consensus       170 ~LkpGG~lvisik~~~~d~t~~~~e~---~~~~~~~L~~~gf~~~~~~~l~p~~~---~h~~v~~~~  230 (232)
T 3id6_C          170 FLKVNGDMLLVIKARSIDVTKDPKEI---YKTEVEKLENSNFETIQIINLDPYDK---DHAIVLSKY  230 (232)
T ss_dssp             HEEEEEEEEEEEC-------CCSSSS---TTHHHHHHHHTTEEEEEEEECTTTCS---SCEEEEEEE
T ss_pred             hCCCCeEEEEEEccCCcccCCCHHHH---HHHHHHHHHHCCCEEEEEeccCCCcC---ceEEEEEEe
Confidence            9999999998843211   0  0111   12344567778998877765544322   345566655

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.70  E-value=8.4e-05  Score=65.52  Aligned_cols=94  Identities=15%  Similarity=0.214  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccccc-------------CC------------h-
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE-------------LP------------G-   69 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~-------------~~------------~-   69 (271)
                      ++.|++.+++.....   ...++.++++++.. ++++++||+|+++..++.             .+            . 
T Consensus       142 s~~~l~~a~~n~~~~---~~~~v~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~  217 (276)
T 2b3t_A          142 MPDAVSLAQRNAQHL---AIKNIHILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADI  217 (276)
T ss_dssp             SHHHHHHHHHHHHHH---TCCSEEEECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHH
T ss_pred             CHHHHHHHHHHHHHc---CCCceEEEEcchhh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHH
Confidence            577788887764211   11368999999876 355679999999743322             11            2 


Q ss_pred             HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           70 DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        70 ~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                      ..++.++.++|||||++++.....    ..    ..+...+..+||..++..
T Consensus       218 ~~~l~~~~~~LkpgG~l~~~~~~~----~~----~~~~~~l~~~Gf~~v~~~  261 (276)
T 2b3t_A          218 VHIIEQSRNALVSGGFLLLEHGWQ----QG----EAVRQAFILAGYHDVETC  261 (276)
T ss_dssp             HHHHHHHGGGEEEEEEEEEECCSS----CH----HHHHHHHHHTTCTTCCEE
T ss_pred             HHHHHHHHHhcCCCCEEEEEECch----HH----HHHHHHHHHCCCcEEEEE
Confidence            678899999999999999975432    11    245566778999876543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.69  E-value=9.4e-05  Score=69.09  Aligned_cols=73  Identities=14%  Similarity=0.161  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccccc-----CCh-HHHHHHHHHhccCCcEEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE-----LPG-DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~-----~~~-~~~L~ei~RvLKPGG~l~i~   89 (271)
                      ++.|++.+++....    .+..+.++++|+.+.+.++++||+|+++..+|+     ... ..++++++++|||||+|++.
T Consensus       264 s~~al~~A~~n~~~----~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv  339 (381)
T 3dmg_A          264 DLASVLSLQKGLEA----NALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV  339 (381)
T ss_dssp             BHHHHHHHHHHHHH----TTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHH----cCCCeEEEEcchhhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence            67888888877421    224588999999998887789999999888877     223 78999999999999999998


Q ss_pred             ecC
Q 024162           90 KKL   92 (271)
Q Consensus        90 ~~~   92 (271)
                      ...
T Consensus       340 ~n~  342 (381)
T 3dmg_A          340 SNP  342 (381)
T ss_dssp             ECT
T ss_pred             EcC
Confidence            765

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=97.68  E-value=0.00013  Score=66.97  Aligned_cols=69  Identities=13%  Similarity=0.146  Sum_probs=52.3

Q ss_pred             HHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccC---Ch-HHHHHHHHHhccCCcEEEEE
Q 024162           19 VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL---PG-DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        19 mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~---~~-~~~L~ei~RvLKPGG~l~i~   89 (271)
                      |++.++++....  ....++.+++++++++++++++||+|++....+++   .. ..++.++.|+|||||+|+..
T Consensus       100 ~l~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          100 ISDYAVKIVKAN--KLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             HHHHHHHHHHHT--TCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             HHHHHHHHHHHc--CCCCcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence            777777764211  12245899999999999999999999996543333   33 88999999999999999743

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.66  E-value=8.5e-05  Score=68.02  Aligned_cols=54  Identities=15%  Similarity=0.232  Sum_probs=47.5

Q ss_pred             CCeEEEeccCCCCCCCCCceeEEEeccccccCCh-H--HHHHHHHHhccC---CcEEEEEecC
Q 024162           36 PQIITQASSLSQLPVESFSIDTVLSISSSHELPG-D--QLLEEISRVLKP---GGTILIYKKL   92 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~--~~L~ei~RvLKP---GG~l~i~~~~   92 (271)
                      .++.++.+|+.. +++  .||+|++..++|++++ .  .+|++++|+|||   ||+|++.+..
T Consensus       236 ~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  295 (358)
T 1zg3_A          236 ENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDIS  295 (358)
T ss_dssp             SSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred             CCcEEEeCccCC-CCC--CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence            348999999987 776  4999999999999987 4  899999999999   9999998864

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=97.60  E-value=0.00017  Score=66.67  Aligned_cols=96  Identities=13%  Similarity=0.023  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CCC-CCCceeEEEeccccccCChHHHHHHHHHhccCCcEE-EEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPV-ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTI-LIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp~-~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l-~i~~~~   92 (271)
                      ++.|++.++++....  .. .++.++++|+.. +|. .+++||+|++...++......++++++|+|||||++ ++....
T Consensus       204 ~~~~l~~a~~~~~~~--g~-~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          204 DERLTKFIEKAANEI--GY-EDIEIFTFDLRKPLPDYALHKFDTFITDPPETLEAIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             CHHHHHHHHHHHHHH--TC-CCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             CHHHHHHHHHHHHHc--CC-CCEEEEEChhhhhchhhccCCccEEEECCCCchHHHHHHHHHHHHHcccCCeEEEEEEec
Confidence            578888888874221  11 268999999988 774 457899999976654443488999999999999955 444433


Q ss_pred             CCCcccHHHHHHHHHHHHH-HcCCcc
Q 024162           93 TSDKGDVDKAISALEGKLL-LAGFLD  117 (271)
Q Consensus        93 ~~~~~e~~~~~~~l~~~l~-laGF~~  117 (271)
                      ..  ... ..+..+...+. ..||..
T Consensus       281 ~~--~~~-~~~~~~~~~l~~~~g~~~  303 (373)
T 2qm3_A          281 RE--SSL-DKWREIQKLLLNEFNVVI  303 (373)
T ss_dssp             TT--CCH-HHHHHHHHHHHHTSCCEE
T ss_pred             Cc--CCH-HHHHHHHHHHHHhcCcch
Confidence            10  111 11224444455 677754

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=97.60  E-value=0.00011  Score=60.22  Aligned_cols=78  Identities=9%  Similarity=0.013  Sum_probs=58.9

Q ss_pred             CCeEEEeccCCCCCCCCCceeEEEeccccccCCh----------HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHH
Q 024162           36 PQIITQASSLSQLPVESFSIDTVLSISSSHELPG----------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISA  105 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~----------~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~  105 (271)
                      .++.++++++.+ ++++++||+|+++..+++..+          ..++.++.+.| |||++++..+...   ..    ..
T Consensus        61 ~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~---~~----~~  131 (170)
T 3q87_B           61 RGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN---RP----KE  131 (170)
T ss_dssp             SSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG---CH----HH
T ss_pred             cCCeEEECChhh-hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC---CH----HH
Confidence            456788999987 777799999999887775332          57889999999 9999999886521   11    25


Q ss_pred             HHHHHHHcCCcchhhhh
Q 024162          106 LEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus       106 l~~~l~laGF~~v~~~~  122 (271)
                      +...+..+||..+....
T Consensus       132 l~~~l~~~gf~~~~~~~  148 (170)
T 3q87_B          132 VLARLEERGYGTRILKV  148 (170)
T ss_dssp             HHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHCCCcEEEEEe
Confidence            66678889998765543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.57  E-value=0.00025  Score=64.87  Aligned_cols=67  Identities=15%  Similarity=0.155  Sum_probs=51.3

Q ss_pred             HHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccc---cccCCh-HHHHHHHHHhccCCcEEE
Q 024162           19 VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISS---SHELPG-DQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        19 mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~---l~~~~~-~~~L~ei~RvLKPGG~l~   87 (271)
                      |++.++++....  ....++.+++++++++++++++||+|++...   +++... ..++.++.|+|||||+++
T Consensus        98 ~~~~a~~~~~~~--~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A           98 ILYQAMDIIRLN--KLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             HHHHHHHHHHHT--TCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             HHHHHHHHHHHc--CCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            677777663211  1225789999999999999899999998653   333444 789999999999999998

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.56  E-value=0.00013  Score=60.49  Aligned_cols=56  Identities=14%  Similarity=0.178  Sum_probs=45.3

Q ss_pred             CeEEEeccCCCCC-------------------------CCCCceeEEEeccccccCC----h--------HHHHHHHHHh
Q 024162           37 QIITQASSLSQLP-------------------------VESFSIDTVLSISSSHELP----G--------DQLLEEISRV   79 (271)
Q Consensus        37 ~v~~~~~d~e~lp-------------------------~~~~sfD~V~s~~~l~~~~----~--------~~~L~ei~Rv   79 (271)
                      ++.++++++.+.+                         +++.+||+|++...+++..    +        ..++++++|+
T Consensus        64 ~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~  143 (201)
T 2plw_A           64 NVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQY  143 (201)
T ss_dssp             TCEEEECCTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEccccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence            5788999998877                         6778999999987766641    2        1378999999


Q ss_pred             ccCCcEEEEEecC
Q 024162           80 LKPGGTILIYKKL   92 (271)
Q Consensus        80 LKPGG~l~i~~~~   92 (271)
                      |||||+|++..+.
T Consensus       144 LkpgG~lv~~~~~  156 (201)
T 2plw_A          144 INIGGTYIVKMYL  156 (201)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             ccCCCEEEEEEeC
Confidence            9999999997765

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.55  E-value=6.7e-05  Score=67.76  Aligned_cols=77  Identities=14%  Similarity=-0.032  Sum_probs=54.9

Q ss_pred             CeEE-EeccCCCCCCCCCceeEEEecccccc-----------CCh-HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHH
Q 024162           37 QIIT-QASSLSQLPVESFSIDTVLSISSSHE-----------LPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAI  103 (271)
Q Consensus        37 ~v~~-~~~d~e~lp~~~~sfD~V~s~~~l~~-----------~~~-~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~  103 (271)
                      ++.+ +++|+.+++++ ++||+|++....++           ... ..++++++|+|||||+|++..+......      
T Consensus       106 ~v~~~i~gD~~~~~~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~------  178 (290)
T 2xyq_A          106 DADSTLIGDCATVHTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNA------  178 (290)
T ss_dssp             SSSEEEESCGGGCCCS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCH------
T ss_pred             CCEEEEECccccCCcc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHH------
Confidence            4667 99999988775 68999999653222           111 4799999999999999999886532211      


Q ss_pred             HHHHHHHHHcCCcchhhh
Q 024162          104 SALEGKLLLAGFLDAQRI  121 (271)
Q Consensus       104 ~~l~~~l~laGF~~v~~~  121 (271)
                       .+...+...||..++..
T Consensus       179 -~l~~~l~~~GF~~v~~~  195 (290)
T 2xyq_A          179 -DLYKLMGHFSWWTAFVT  195 (290)
T ss_dssp             -HHHHHHTTEEEEEEEEE
T ss_pred             -HHHHHHHHcCCcEEEEE
Confidence             44555677788765544

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=97.54  E-value=2.9e-05  Score=73.62  Aligned_cols=56  Identities=16%  Similarity=0.167  Sum_probs=46.8

Q ss_pred             CCeEEEeccCCCCCCCC--CceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           36 PQIITQASSLSQLPVES--FSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~~--~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .+|.++++|+.++|+.+  ..||+|+++..++ .++ ...|.+++|+|||||+|++.+..
T Consensus       232 ~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGGrIVssE~f  290 (438)
T 3uwp_A          232 AEYTLERGDFLSEEWRERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRIVSSKPF  290 (438)
T ss_dssp             CEEEEEECCTTSHHHHHHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTCEEEESSCS
T ss_pred             CCeEEEECcccCCccccccCCccEEEEccccc-CchHHHHHHHHHHcCCCCcEEEEeecc
Confidence            57999999999999865  5799999876543 344 88899999999999999998754

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.51  E-value=0.00027  Score=62.16  Aligned_cols=92  Identities=12%  Similarity=0.078  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      ++.+++.+++.....  ....++.+..+++.+. +++++||+|++..     ++ ..++.++.++|+|||+|++..+.. 
T Consensus       146 s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~-~~~~~~D~V~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~-  216 (277)
T 1o54_A          146 REEFAKLAESNLTKW--GLIERVTIKVRDISEG-FDEKDVDALFLDV-----PDPWNYIDKCWEALKGGGRFATVCPTT-  216 (277)
T ss_dssp             CHHHHHHHHHHHHHT--TCGGGEEEECCCGGGC-CSCCSEEEEEECC-----SCGGGTHHHHHHHEEEEEEEEEEESSH-
T ss_pred             CHHHHHHHHHHHHHc--CCCCCEEEEECCHHHc-ccCCccCEEEECC-----cCHHHHHHHHHHHcCCCCEEEEEeCCH-
Confidence            566777777653211  0113688899998876 7778999999842     33 578999999999999999998651 


Q ss_pred             CcccHHHHHHHHHHHHHHcCCcchhhhh
Q 024162           95 DKGDVDKAISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus        95 ~~~e~~~~~~~l~~~l~laGF~~v~~~~  122 (271)
                            .....+...+..+||..++..+
T Consensus       217 ------~~~~~~~~~l~~~gf~~~~~~~  238 (277)
T 1o54_A          217 ------NQVQETLKKLQELPFIRIEVWE  238 (277)
T ss_dssp             ------HHHHHHHHHHHHSSEEEEEEEC
T ss_pred             ------HHHHHHHHHHHHCCCceeEEEE
Confidence                  1123455567779998766543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=97.50  E-value=0.00015  Score=64.38  Aligned_cols=68  Identities=12%  Similarity=0.055  Sum_probs=50.2

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCC-----CCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV-----ESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTI   86 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~-----~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l   86 (271)
                      .++.|++.++++....         ++..++..++.     .+++||+|++..++||+..   ..++++++++| |||+|
T Consensus        75 ~S~~ml~~Ar~~~~~~---------~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l  144 (261)
T 3iv6_A           75 FSQRMCDDLAEALADR---------CVTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTV  144 (261)
T ss_dssp             SCHHHHHHHHHHTSSS---------CCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEE
T ss_pred             CCHHHHHHHHHHHHhc---------cceeeeeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEE
Confidence            4789999999885221         12233333332     2578999999999988764   67999999999 99999


Q ss_pred             EEEecC
Q 024162           87 LIYKKL   92 (271)
Q Consensus        87 ~i~~~~   92 (271)
                      +++...
T Consensus       145 ~lS~~~  150 (261)
T 3iv6_A          145 RASVKL  150 (261)
T ss_dssp             EEEEEB
T ss_pred             EEEecc
Confidence            998754

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.49  E-value=0.00014  Score=61.19  Aligned_cols=74  Identities=9%  Similarity=-0.051  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CCCCCCceeEEEeccccccCChHHHHHHHHH--hccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEISR--VLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~R--vLKPGG~l~i~~~~   92 (271)
                      ++.|++.++++....   ...++.++++|+.+ ++...++||+|++...++.-....+++++.+  +|||||+|++....
T Consensus        86 s~~~l~~a~~~~~~~---~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A           86 DRAVSQQLIKNLATL---KAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             CHHHHHHHHHHHHHT---TCCSEEEECSCHHHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             CHHHHHHHHHHHHHc---CCCcEEEEECCHHHHHhhcCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            678888888764221   11478999999876 5777789999999766553223778888865  59999999988754

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.49  E-value=0.0002  Score=65.45  Aligned_cols=74  Identities=15%  Similarity=0.143  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC--CCCCCceeEEEecccccc-----CChHHHHHHHHHhccCCcEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLSISSSHE-----LPGDQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l--p~~~~sfD~V~s~~~l~~-----~~~~~~L~ei~RvLKPGG~l~i   88 (271)
                      ++.|++++|++...   ....++.++.+|+..+  .+++++||+|++....++     +...+++++++|+|||||+|++
T Consensus       122 dp~vi~~Ar~~~~~---~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~  198 (317)
T 3gjy_A          122 DAELARLSREWFDI---PRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVA  198 (317)
T ss_dssp             CHHHHHHHHHHSCC---CCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHHHhccc---cCCCceEEEECcHHHHHhhccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            67899999988521   1346789999998754  355789999998543222     2237899999999999999998


Q ss_pred             EecC
Q 024162           89 YKKL   92 (271)
Q Consensus        89 ~~~~   92 (271)
                      ....
T Consensus       199 ~~~~  202 (317)
T 3gjy_A          199 NCGD  202 (317)
T ss_dssp             EEEE
T ss_pred             EecC
Confidence            8764

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=97.49  E-value=0.00033  Score=56.48  Aligned_cols=85  Identities=4%  Similarity=0.033  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD   95 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~   95 (271)
                      ++.|++.++++....   ...++.++++++.+ ++++++||+|++...   -....+++++.++  |||+|++.....  
T Consensus        66 ~~~~~~~a~~~~~~~---~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~---~~~~~~l~~~~~~--~gG~l~~~~~~~--  134 (183)
T 2yxd_A           66 LDGAIEVTKQNLAKF---NIKNCQIIKGRAED-VLDKLEFNKAFIGGT---KNIEKIIEILDKK--KINHIVANTIVL--  134 (183)
T ss_dssp             SHHHHHHHHHHHHHT---TCCSEEEEESCHHH-HGGGCCCSEEEECSC---SCHHHHHHHHHHT--TCCEEEEEESCH--
T ss_pred             CHHHHHHHHHHHHHc---CCCcEEEEECCccc-cccCCCCcEEEECCc---ccHHHHHHHHhhC--CCCEEEEEeccc--
Confidence            577888888764211   11468899999887 777789999999876   2238899999999  999999998652  


Q ss_pred             cccHHHHHHHHHHHHHHcCCc
Q 024162           96 KGDVDKAISALEGKLLLAGFL  116 (271)
Q Consensus        96 ~~e~~~~~~~l~~~l~laGF~  116 (271)
                           .....+...+..+||.
T Consensus       135 -----~~~~~~~~~l~~~g~~  150 (183)
T 2yxd_A          135 -----ENAAKIINEFESRGYN  150 (183)
T ss_dssp             -----HHHHHHHHHHHHTTCE
T ss_pred             -----ccHHHHHHHHHHcCCe
Confidence                 1123566778888864

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.49  E-value=8.7e-05  Score=62.47  Aligned_cols=75  Identities=17%  Similarity=0.165  Sum_probs=54.7

Q ss_pred             cHHHHHHHHHHhCchhhhcCC-CCeEEEeccCCCCCC--CCCc-eeEEEeccccccCCh-HHHHHHH--HHhccCCcEEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCD-PQIITQASSLSQLPV--ESFS-IDTVLSISSSHELPG-DQLLEEI--SRVLKPGGTIL   87 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~-~~v~~~~~d~e~lp~--~~~s-fD~V~s~~~l~~~~~-~~~L~ei--~RvLKPGG~l~   87 (271)
                      .++.|++.++++....  ... .++.++++|+.++..  .+++ ||+|++...++ ... ..+++++  .|+|||||+|+
T Consensus        84 ~s~~~l~~a~~~~~~~--~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~  160 (201)
T 2ift_A           84 LDKTVANQLKKNLQTL--KCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFH-FNLAEQAISLLCENNWLKPNALIY  160 (201)
T ss_dssp             SCHHHHHHHHHHHHHT--TCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSS-SCHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHh--CCCccceEEEECCHHHHHHhhccCCCCCEEEECCCCC-CccHHHHHHHHHhcCccCCCcEEE
Confidence            3678888888864211  111 368999999876532  3678 99999977654 344 7889999  77899999999


Q ss_pred             EEecC
Q 024162           88 IYKKL   92 (271)
Q Consensus        88 i~~~~   92 (271)
                      +....
T Consensus       161 i~~~~  165 (201)
T 2ift_A          161 VETEK  165 (201)
T ss_dssp             EEEES
T ss_pred             EEECC
Confidence            98765

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.48  E-value=0.0005  Score=60.27  Aligned_cols=77  Identities=8%  Similarity=0.079  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHhCchhh-hcCCCCeEEEeccCCCC-------CCCCCceeEEEeccccccC-----------------C--
Q 024162           16 VSAVLNAIRDLGDEAV-EQCDPQIITQASSLSQL-------PVESFSIDTVLSISSSHEL-----------------P--   68 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~-~~~~~~v~~~~~d~e~l-------p~~~~sfD~V~s~~~l~~~-----------------~--   68 (271)
                      ++.|++.+++...... .....++.++++|+.++       ++++++||+|+++..+...                 .  
T Consensus        69 ~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~  148 (260)
T 2ozv_A           69 SQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGL  148 (260)
T ss_dssp             SHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CC
T ss_pred             CHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCC
Confidence            5788888888742100 01112588999999887       3678899999997433221                 1  


Q ss_pred             hHHHHHHHHHhccCCcEEEEEecC
Q 024162           69 GDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        69 ~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      -..+++++.++|||||+|++....
T Consensus       149 ~~~~l~~~~~~LkpgG~l~~~~~~  172 (260)
T 2ozv_A          149 FEDWIRTASAIMVSGGQLSLISRP  172 (260)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             HHHHHHHHHHHcCCCCEEEEEEcH
Confidence            278899999999999999987644

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.45  E-value=0.00016  Score=64.13  Aligned_cols=95  Identities=7%  Similarity=0.006  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD   95 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~   95 (271)
                      ++.|++.+++.....  .....+.++++|+.+++. .++||+|++....   ....++.+++|+|||||+|++.+.....
T Consensus       157 s~~~~~~a~~n~~~n--~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~  230 (278)
T 2frn_A          157 DPYTFKFLVENIHLN--KVEDRMSAYNMDNRDFPG-ENIADRILMGYVV---RTHEFIPKALSIAKDGAIIHYHNTVPEK  230 (278)
T ss_dssp             CHHHHHHHHHHHHHT--TCTTTEEEECSCTTTCCC-CSCEEEEEECCCS---SGGGGHHHHHHHEEEEEEEEEEEEEEGG
T ss_pred             CHHHHHHHHHHHHHc--CCCceEEEEECCHHHhcc-cCCccEEEECCch---hHHHHHHHHHHHCCCCeEEEEEEeeccc
Confidence            567777777763211  112348899999998877 7899999985431   1267899999999999999998876321


Q ss_pred             cccHHHHHHHHHHHHHHcCCcc
Q 024162           96 KGDVDKAISALEGKLLLAGFLD  117 (271)
Q Consensus        96 ~~e~~~~~~~l~~~l~laGF~~  117 (271)
                      .. .....+.+...+..+||..
T Consensus       231 ~~-~~~~~~~i~~~~~~~G~~~  251 (278)
T 2frn_A          231 LM-PREPFETFKRITKEYGYDV  251 (278)
T ss_dssp             GT-TTTTHHHHHHHHHHTTCEE
T ss_pred             cc-cccHHHHHHHHHHHcCCee
Confidence            10 0112235566778889864

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.45  E-value=0.0002  Score=65.32  Aligned_cols=71  Identities=18%  Similarity=0.129  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccC-----Ch-HHHHHHHHHhccCCcEEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL-----PG-DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~-----~~-~~~L~ei~RvLKPGG~l~i~   89 (271)
                      ++.|++.++++...    .+..+.++.+++...  .+++||+|+++..+|+.     .. ..++++++|+|||||+|++.
T Consensus       229 s~~~l~~a~~~~~~----~~~~~~~~~~d~~~~--~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~  302 (343)
T 2pjd_A          229 SAPAVEASRATLAA----NGVEGEVFASNVFSE--VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (343)
T ss_dssp             BHHHHHHHHHHHHH----TTCCCEEEECSTTTT--CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHH----hCCCCEEEEcccccc--ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            67888888877421    223456777887654  37799999998888752     22 78999999999999999998


Q ss_pred             ecC
Q 024162           90 KKL   92 (271)
Q Consensus        90 ~~~   92 (271)
                      ...
T Consensus       303 ~~~  305 (343)
T 2pjd_A          303 ANA  305 (343)
T ss_dssp             EET
T ss_pred             EcC
Confidence            765

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.44  E-value=0.00019  Score=60.89  Aligned_cols=68  Identities=16%  Similarity=0.030  Sum_probs=53.4

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.|++.++++...    . .++.++.+++......+++||+|++...++++.     .+++++|||||++++....
T Consensus       100 ~~~~~~~~a~~~~~~----~-~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~-----~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          100 INEKMYNYASKLLSY----Y-NNIKLILGDGTLGYEEEKPYDRVVVWATAPTLL-----CKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             SCHHHHHHHHHHHTT----C-SSEEEEESCGGGCCGGGCCEEEEEESSBBSSCC-----HHHHHTEEEEEEEEEEECS
T ss_pred             CCHHHHHHHHHHHhh----c-CCeEEEECCcccccccCCCccEEEECCcHHHHH-----HHHHHHcCCCcEEEEEEcC
Confidence            367888888887421    1 168899999887333567999999999888876     4799999999999999765

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.44  E-value=0.0002  Score=66.72  Aligned_cols=76  Identities=16%  Similarity=0.151  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccC---Ch---HHHHHHHHHhccCCcEEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL---PG---DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~---~~---~~~L~ei~RvLKPGG~l~i~   89 (271)
                      ++.|++.++++..........++.+..+++.+ ++++++||+|+++..+|+.   ..   ..++++++|+|||||+|++.
T Consensus       255 s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv  333 (375)
T 4dcm_A          255 SPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  333 (375)
T ss_dssp             CHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            57788888876422110111358889999887 6778899999998877742   22   57899999999999999998


Q ss_pred             ecC
Q 024162           90 KKL   92 (271)
Q Consensus        90 ~~~   92 (271)
                      ...
T Consensus       334 ~n~  336 (375)
T 4dcm_A          334 ANR  336 (375)
T ss_dssp             EET
T ss_pred             EEC
Confidence            754

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.44  E-value=0.00067  Score=57.49  Aligned_cols=67  Identities=16%  Similarity=0.198  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC---CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP---VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp---~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~   89 (271)
                      ++.|++.+++....     ..++.++++++....   ...++||+|++...  .... ..++.+++|+|||||+|++.
T Consensus       107 s~~~~~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          107 SPRVLRELVPIVEE-----RRNIVPILGDATKPEEYRALVPKVDVIFEDVA--QPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CHHHHHHHHHHHSS-----CTTEEEEECCTTCGGGGTTTCCCEEEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHhc-----cCCCEEEEccCCCcchhhcccCCceEEEECCC--CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            56666666665321     156899999998732   12458999997654  1112 45599999999999999998

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=97.42  E-value=0.0003  Score=65.25  Aligned_cols=71  Identities=18%  Similarity=0.194  Sum_probs=52.3

Q ss_pred             HHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC---h-HHHHHHHHHhccCCcEEEEEec
Q 024162           18 AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---G-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        18 ~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~---~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .|++.++++....  ....++.++++++++++++ ++||+|++....+++.   . ..++.+++|+|||||.|++...
T Consensus        96 ~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~  170 (376)
T 3r0q_C           96 KMADHARALVKAN--NLDHIVEVIEGSVEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA  170 (376)
T ss_dssp             TTHHHHHHHHHHT--TCTTTEEEEESCGGGCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred             HHHHHHHHHHHHc--CCCCeEEEEECchhhcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence            4666666653211  1224589999999999887 8999999966555543   2 7799999999999999987543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.41  E-value=0.0002  Score=64.64  Aligned_cols=69  Identities=16%  Similarity=0.115  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.++++...   ....++.++.+++...+..+++||+|++...++++.     .++.++|||||++++....
T Consensus       109 s~~~~~~a~~~~~~---~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~-----~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          109 SRKICEIAKRNVER---LGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP-----ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             CHHHHHHHHHHHHH---TTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSCCC-----HHHHHHEEEEEEEEEEBCB
T ss_pred             CHHHHHHHHHHHHH---cCCCCeEEEECChhhccccCCCeEEEEEcCCHHHHH-----HHHHHhcCCCcEEEEEECC
Confidence            57788888876421   112358999999988666678999999999888886     6789999999999998643

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.40  E-value=0.00068  Score=61.32  Aligned_cols=82  Identities=23%  Similarity=0.148  Sum_probs=54.7

Q ss_pred             EEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccc------cccCCh---------
Q 024162            5 VLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISS------SHELPG---------   69 (271)
Q Consensus         5 vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~------l~~~~~---------   69 (271)
                      .++..|.    ++.|++.++++....   ...++.++++|+..++..+++||+|++...      ++..++         
T Consensus       145 ~v~avD~----s~~~l~~a~~~~~~~---g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~  217 (315)
T 1ixk_A          145 VIYAFDV----DENRLRETRLNLSRL---GVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDD  217 (315)
T ss_dssp             EEEEECS----CHHHHHHHHHHHHHH---TCCSEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHH
T ss_pred             EEEEEcC----CHHHHHHHHHHHHHh---CCCeEEEEECChhhcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHH
Confidence            3444444    456667776653211   113688999999888766678999998321      211111         


Q ss_pred             --------HHHHHHHHHhccCCcEEEEEecCC
Q 024162           70 --------DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        70 --------~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                              ..+|.+++++|||||+|++++...
T Consensus       218 ~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          218 IKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence                    478999999999999999988653

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.40  E-value=0.00038  Score=59.91  Aligned_cols=70  Identities=9%  Similarity=0.112  Sum_probs=45.9

Q ss_pred             HHHHHHH---HHhCchhhhcCCCCeEEEeccCCCCCCC-CCceeEEEecccccc-----CC-hHHHHHHHHHhccCCcEE
Q 024162           17 SAVLNAI---RDLGDEAVEQCDPQIITQASSLSQLPVE-SFSIDTVLSISSSHE-----LP-GDQLLEEISRVLKPGGTI   86 (271)
Q Consensus        17 ~~mv~~a---r~~~~~~~~~~~~~v~~~~~d~e~lp~~-~~sfD~V~s~~~l~~-----~~-~~~~L~ei~RvLKPGG~l   86 (271)
                      +.|++.|   +++..   .....++.|++++++.+|.. ...||.|++++...+     .. ...+|++++|+|||||+|
T Consensus        59 ~~ml~~A~~A~~~~~---~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l  135 (225)
T 3p2e_A           59 ENLFDISKKIIKKPS---KGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHF  135 (225)
T ss_dssp             GGGHHHHHHHTSCGG---GTCCSSEEEECCBTTBCCGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHH---HcCCCCeEEEEcCHHHhhhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEE
Confidence            5566665   44431   12224689999999998742 255666665543211     11 267899999999999999


Q ss_pred             EEE
Q 024162           87 LIY   89 (271)
Q Consensus        87 ~i~   89 (271)
                      ++.
T Consensus       136 ~i~  138 (225)
T 3p2e_A          136 EFV  138 (225)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            993

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.39  E-value=0.00033  Score=64.11  Aligned_cols=74  Identities=18%  Similarity=0.121  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---------HHHHHHHHHhccCCcEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---------DQLLEEISRVLKPGGTI   86 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---------~~~L~ei~RvLKPGG~l   86 (271)
                      ++.|++.+++.....   .-..+.+.++|+.+++.+..+||+|+++..+.+...         ..+++++.|+|||||++
T Consensus       237 ~~~~i~~a~~n~~~~---g~~~i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l  313 (354)
T 3tma_A          237 DEKRLGLAREAALAS---GLSWIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRV  313 (354)
T ss_dssp             CHHHHHHHHHHHHHT---TCTTCEEEECCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEE
T ss_pred             CHHHHHHHHHHHHHc---CCCceEEEeCChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEE
Confidence            677888888764221   112689999999999988888999999655433211         67899999999999999


Q ss_pred             EEEecC
Q 024162           87 LIYKKL   92 (271)
Q Consensus        87 ~i~~~~   92 (271)
                      ++.+..
T Consensus       314 ~i~t~~  319 (354)
T 3tma_A          314 ALLTLR  319 (354)
T ss_dssp             EEEESC
T ss_pred             EEEeCC
Confidence            999865

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.39  E-value=0.00028  Score=59.18  Aligned_cols=70  Identities=14%  Similarity=0.139  Sum_probs=52.1

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.|++.++++...   ....++.+..+++.......++||+|++...++++.     .+++++|||||+|++....
T Consensus       110 ~~~~~~~~a~~~~~~---~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~-----~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          110 RIPELAEKAERTLRK---LGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIP-----EPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             SCHHHHHHHHHHHHH---HTCTTEEEEESCGGGCCGGGCCEEEEEESSBBSSCC-----HHHHHTEEEEEEEEEEESS
T ss_pred             CCHHHHHHHHHHHHH---cCCCCeEEEECCcccCCCCCCCeeEEEECCchHHHH-----HHHHHHcCCCcEEEEEECC
Confidence            356788888876421   111358888888854322367899999999888886     4899999999999998765

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=97.37  E-value=0.00032  Score=58.35  Aligned_cols=69  Identities=14%  Similarity=0.185  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.+++....   ....++.+.++++..++ +.++||+|++..    +.+ ..++.+++++|+|||+|++....
T Consensus        98 s~~~~~~a~~~~~~---~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~  167 (207)
T 1jsx_A           98 LGKRVRFLRQVQHE---LKLENIEPVQSRVEEFP-SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYALKGQ  167 (207)
T ss_dssp             CHHHHHHHHHHHHH---TTCSSEEEEECCTTTSC-CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred             CHHHHHHHHHHHHH---cCCCCeEEEecchhhCC-ccCCcCEEEEec----cCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            57778888776421   11134889999998876 567899999753    233 78999999999999999998654

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=97.37  E-value=0.00063  Score=61.79  Aligned_cols=68  Identities=16%  Similarity=0.151  Sum_probs=50.7

Q ss_pred             HHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccccc---CCh-HHHHHHHHHhccCCcEEEE
Q 024162           19 VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE---LPG-DQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        19 mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~---~~~-~~~L~ei~RvLKPGG~l~i   88 (271)
                      |++.++++....  ....++.+++++++++++++++||+|++....+.   ... ..++.++.|+|||||+++.
T Consensus        72 ~~~~a~~~~~~~--~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1           72 IIEMAKELVELN--GFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             HHHHHHHHHHHT--TCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             HHHHHHHHHHHc--CCCCCEEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            677777663211  1224689999999999998889999999754333   223 7899999999999999974

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=97.34  E-value=0.00011  Score=59.84  Aligned_cols=76  Identities=16%  Similarity=0.067  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC----CCCCCceeEEEeccccccCChHHHHHHH--HHhccCCcEEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL----PVESFSIDTVLSISSSHELPGDQLLEEI--SRVLKPGGTILIY   89 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l----p~~~~sfD~V~s~~~l~~~~~~~~L~ei--~RvLKPGG~l~i~   89 (271)
                      ++.|++.+++.....  ....++.++++|+.+.    ++.+++||+|++...++.......+..+  +|+|||||++++.
T Consensus        76 ~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~  153 (187)
T 2fhp_A           76 NFAALKVIKENIAIT--KEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE  153 (187)
T ss_dssp             CHHHHHHHHHHHHHH--TCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHh--CCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEE
Confidence            577888888764221  1113588999998763    2337899999998765543447778888  9999999999998


Q ss_pred             ecCC
Q 024162           90 KKLT   93 (271)
Q Consensus        90 ~~~~   93 (271)
                      ....
T Consensus       154 ~~~~  157 (187)
T 2fhp_A          154 TDKT  157 (187)
T ss_dssp             EETT
T ss_pred             eCCc
Confidence            7664

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.34  E-value=0.00085  Score=57.94  Aligned_cols=76  Identities=20%  Similarity=0.170  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhCchhhh--c---CCCCeEEEeccCCC-CC--CCCCceeEEEeccccccCC---------hHHHHHHHHH
Q 024162           16 VSAVLNAIRDLGDEAVE--Q---CDPQIITQASSLSQ-LP--VESFSIDTVLSISSSHELP---------GDQLLEEISR   78 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~--~---~~~~v~~~~~d~e~-lp--~~~~sfD~V~s~~~l~~~~---------~~~~L~ei~R   78 (271)
                      ++.|++.++++......  .   ...++.++++|+.. ++  ++.++||.|+....-.|..         ...++.++.+
T Consensus        82 s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~  161 (246)
T 2vdv_E           82 RVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAY  161 (246)
T ss_dssp             CHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccccCEEEEECCCcccccchhHHhhccHHHHHHHHH
Confidence            56677777665321100  0   12468999999986 67  7889999998755333321         1489999999


Q ss_pred             hccCCcEEEEEec
Q 024162           79 VLKPGGTILIYKK   91 (271)
Q Consensus        79 vLKPGG~l~i~~~   91 (271)
                      +|||||+|++.+.
T Consensus       162 ~LkpgG~l~~~td  174 (246)
T 2vdv_E          162 VLKEGGVVYTITD  174 (246)
T ss_dssp             HEEEEEEEEEEES
T ss_pred             HcCCCCEEEEEec
Confidence            9999999999753

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.33  E-value=2.6e-05  Score=64.84  Aligned_cols=94  Identities=7%  Similarity=-0.038  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCC-----CceeEEEeccccccCCh---------------------
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVES-----FSIDTVLSISSSHELPG---------------------   69 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~-----~sfD~V~s~~~l~~~~~---------------------   69 (271)
                      ++.|++.++++....    +.++.++++|+.+ ++++     ++||+|++...++....                     
T Consensus        63 ~~~~~~~a~~~~~~~----~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (215)
T 4dzr_A           63 SMDALAVARRNAERF----GAVVDWAAADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGE  137 (215)
T ss_dssp             C-----------------------CCHHHHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------
T ss_pred             CHHHHHHHHHHHHHh----CCceEEEEcchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCC
Confidence            456677777664211    1267788888877 6665     89999999644322111                     


Q ss_pred             ------HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHH--HcCCcchhhh
Q 024162           70 ------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLL--LAGFLDAQRI  121 (271)
Q Consensus        70 ------~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~--laGF~~v~~~  121 (271)
                            ..++++++++|||||++++......   ..    ..+...+.  .+||..+...
T Consensus       138 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~----~~~~~~l~~~~~gf~~~~~~  190 (215)
T 4dzr_A          138 DGLQFYRRMAALPPYVLARGRAGVFLEVGHN---QA----DEVARLFAPWRERGFRVRKV  190 (215)
T ss_dssp             CTTHHHHHHHTCCGGGBCSSSEEEEEECTTS---CH----HHHHHHTGGGGGGTEECCEE
T ss_pred             cHHHHHHHHHHHHHHHhcCCCeEEEEEECCc---cH----HHHHHHHHHhhcCCceEEEE
Confidence                  5678899999999999555544321   11    14445566  7888776554

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.28  E-value=0.0003  Score=59.55  Aligned_cols=72  Identities=10%  Similarity=0.075  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhCchh-hh-cCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEA-VE-QCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~-~~-~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.++++.... .. ....++.++++++...+...++||+|++...++++     +.+++++|||||+|++....
T Consensus       111 s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-----~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          111 IKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVV-----PQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             CHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSC-----CHHHHHTEEEEEEEEEEESC
T ss_pred             CHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEEECCchHHH-----HHHHHHhcCCCcEEEEEEec
Confidence            567777777664211 00 00246889999998776667899999998777665     36899999999999998764

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.25  E-value=0.00041  Score=64.79  Aligned_cols=48  Identities=21%  Similarity=0.173  Sum_probs=41.0

Q ss_pred             CCCCCCCceeEEEeccccccCCh---------------------------------------HHHHHHHHHhccCCcEEE
Q 024162           47 QLPVESFSIDTVLSISSSHELPG---------------------------------------DQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        47 ~lp~~~~sfD~V~s~~~l~~~~~---------------------------------------~~~L~ei~RvLKPGG~l~   87 (271)
                      .-.|+++|||+|+|++++||+..                                       ..+|+..+|.|+|||+++
T Consensus       143 ~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mv  222 (374)
T 3b5i_A          143 RRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMF  222 (374)
T ss_dssp             SCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            34589999999999999999872                                       336888999999999999


Q ss_pred             EEecCCC
Q 024162           88 IYKKLTS   94 (271)
Q Consensus        88 i~~~~~~   94 (271)
                      ++..+.+
T Consensus       223 l~~~gr~  229 (374)
T 3b5i_A          223 LVCLGRT  229 (374)
T ss_dssp             EEEEECC
T ss_pred             EEEecCC
Confidence            9988764

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=97.22  E-value=0.00012  Score=59.65  Aligned_cols=77  Identities=9%  Similarity=-0.026  Sum_probs=54.1

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CCCCCCceeEEEeccccccCChHHHHHHHH--HhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEIS--RVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~--RvLKPGG~l~i~~~   91 (271)
                      .++.|++.++++....  ....++.++.+++.+ ++..++.||+|++...++......++..+.  ++|||||++++...
T Consensus        62 ~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~  139 (177)
T 2esr_A           62 KNRKAQAIIQDNIIMT--KAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETD  139 (177)
T ss_dssp             CCHHHHHHHHHHHHTT--TCGGGEEEECSCHHHHHHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHc--CCCCceEEEECcHHHhHHhhcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence            3677888888764211  011358899999876 455557899999976543322367778887  99999999999887


Q ss_pred             CC
Q 024162           92 LT   93 (271)
Q Consensus        92 ~~   93 (271)
                      ..
T Consensus       140 ~~  141 (177)
T 2esr_A          140 KT  141 (177)
T ss_dssp             TT
T ss_pred             Cc
Confidence            64

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.21  E-value=0.00073  Score=57.68  Aligned_cols=71  Identities=8%  Similarity=0.007  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.+++.++++....  ....++.+..+++.+..+++.+||+|++...    ....+++++.++|||||++++....
T Consensus       122 ~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          122 VEEFYKTAQKNLKKF--NLGKNVKFFNVDFKDAEVPEGIFHAAFVDVR----EPWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             CHHHHHHHHHHHHHT--TCCTTEEEECSCTTTSCCCTTCBSEEEECSS----CGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             CHHHHHHHHHHHHHc--CCCCcEEEEEcChhhcccCCCcccEEEECCc----CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            567777787764211  1124688999998875546779999998421    1257899999999999999999865

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.20  E-value=0.00027  Score=59.95  Aligned_cols=74  Identities=14%  Similarity=0.123  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CCCCC-----CceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPVES-----FSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp~~~-----~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i   88 (271)
                      ++.|++.++++....  ....++.++++++.+ ++...     ++||+|++....++..+ ..++.++ |+|||||+|++
T Consensus        92 ~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~  168 (221)
T 3u81_A           92 NPDCAAITQQMLNFA--GLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLA  168 (221)
T ss_dssp             CHHHHHHHHHHHHHH--TCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEE
T ss_pred             ChHHHHHHHHHHHHc--CCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEE
Confidence            577888888764221  112358999999754 33322     78999999776665544 5677777 99999999998


Q ss_pred             EecC
Q 024162           89 YKKL   92 (271)
Q Consensus        89 ~~~~   92 (271)
                      .+..
T Consensus       169 ~~~~  172 (221)
T 3u81_A          169 DNVI  172 (221)
T ss_dssp             SCCC
T ss_pred             eCCC
Confidence            8765

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.16  E-value=0.00041  Score=58.99  Aligned_cols=71  Identities=8%  Similarity=0.090  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhCchhhh--cCCCCeEEEeccCCCCCCCC-CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVE--QCDPQIITQASSLSQLPVES-FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~--~~~~~v~~~~~d~e~lp~~~-~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.++++......  ....++.++.+++.. ++++ ++||+|++...++++.     .+++++|||||+|++....
T Consensus       123 ~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~I~~~~~~~~~~-----~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          123 QAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNAPYNAIHVGAAAPDTP-----TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGCSEEEEEECSCBSSCC-----HHHHHTEEEEEEEEEEESC
T ss_pred             CHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCCCccEEEECCchHHHH-----HHHHHHhcCCCEEEEEEec
Confidence            56777888776421100  001468899999876 5554 7899999988888774     7899999999999998764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.16  E-value=0.0003  Score=59.60  Aligned_cols=72  Identities=17%  Similarity=0.058  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhCchhhh--cCCCCeEEEeccCCCCC----CCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEE
Q 024162           16 VSAVLNAIRDLGDEAVE--QCDPQIITQASSLSQLP----VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~--~~~~~v~~~~~d~e~lp----~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~   89 (271)
                      ++.|++.++++......  ....++.++.+++....    ...++||+|++...++++     +.+++++|||||+|++.
T Consensus       118 ~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~-----~~~~~~~LkpgG~lv~~  192 (227)
T 2pbf_A          118 VKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASEL-----PEILVDLLAENGKLIIP  192 (227)
T ss_dssp             CHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHCCEEEEEECSBBSSC-----CHHHHHHEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCCCcCEEEECCchHHH-----HHHHHHhcCCCcEEEEE
Confidence            56778888776421100  00246889999998765    567889999998887766     47899999999999998


Q ss_pred             ecC
Q 024162           90 KKL   92 (271)
Q Consensus        90 ~~~   92 (271)
                      .+.
T Consensus       193 ~~~  195 (227)
T 2pbf_A          193 IEE  195 (227)
T ss_dssp             EEE
T ss_pred             Ecc
Confidence            764

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.16  E-value=0.00065  Score=58.14  Aligned_cols=69  Identities=12%  Similarity=0.140  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCc-eeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFS-IDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~s-fD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      ++.+++.++++...   ....++.+..+++ ..++++.. ||+|++...++++.     .++.++|||||+|++.....
T Consensus       123 ~~~~~~~a~~~~~~---~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~~~~~~~-----~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          123 IPELVEFAKRNLER---AGVKNVHVILGDG-SKGFPPKAPYDVIIVTAGAPKIP-----EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             CHHHHHHHHHHHHH---TTCCSEEEEESCG-GGCCGGGCCEEEEEECSBBSSCC-----HHHHHTEEEEEEEEEEECSS
T ss_pred             CHHHHHHHHHHHHH---cCCCCcEEEECCc-ccCCCCCCCccEEEECCcHHHHH-----HHHHHhcCCCcEEEEEEecC
Confidence            56788888876421   1113588888987 45665544 99999988888775     47899999999999988653

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.13  E-value=0.00053  Score=56.40  Aligned_cols=57  Identities=19%  Similarity=0.173  Sum_probs=42.2

Q ss_pred             CeEEE-eccCCCCC--------CCCCceeEEEecccccc----CCh--------HHHHHHHHHhccCCcEEEEEecCC
Q 024162           37 QIITQ-ASSLSQLP--------VESFSIDTVLSISSSHE----LPG--------DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        37 ~v~~~-~~d~e~lp--------~~~~sfD~V~s~~~l~~----~~~--------~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      ++.++ ++++...+        +++++||+|++...+++    ..+        ..++++++|+|||||+|++..+..
T Consensus        71 ~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A           71 GATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             TCEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             CCeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            46777 88876653        34568999998654332    222        278999999999999999998763

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.11  E-value=0.0004  Score=65.08  Aligned_cols=73  Identities=18%  Similarity=0.158  Sum_probs=49.1

Q ss_pred             CCCCCCceeEEEeccccccCCh-HH------------------------H---------------HHHHHHhccCCcEEE
Q 024162           48 LPVESFSIDTVLSISSSHELPG-DQ------------------------L---------------LEEISRVLKPGGTIL   87 (271)
Q Consensus        48 lp~~~~sfD~V~s~~~l~~~~~-~~------------------------~---------------L~ei~RvLKPGG~l~   87 (271)
                      -.|++++||+|+|++++||+.. +.                        +               |+-.+|.|+|||+++
T Consensus       143 rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mv  222 (384)
T 2efj_A          143 RLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRML  222 (384)
T ss_dssp             CCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEE
Confidence            4688999999999999999864 21                        1               555589999999999


Q ss_pred             EEecCCCCc--c-cHHHHHHHHHHHHHHcCCcchhh
Q 024162           88 IYKKLTSDK--G-DVDKAISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        88 i~~~~~~~~--~-e~~~~~~~l~~~l~laGF~~v~~  120 (271)
                      +...+.+..  . ............+...|.+..+.
T Consensus       223 l~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek  258 (384)
T 2efj_A          223 LTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEK  258 (384)
T ss_dssp             EEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHH
T ss_pred             EEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhh
Confidence            999886544  2 00012223334455567655443

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.08  E-value=0.0004  Score=62.84  Aligned_cols=76  Identities=14%  Similarity=0.118  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHhCchh-hh-cCCCCeEEEeccCCC-CCCCCCceeEEEecccccc---CC-----hHHHHHHHHHhccCCc
Q 024162           16 VSAVLNAIRDLGDEA-VE-QCDPQIITQASSLSQ-LPVESFSIDTVLSISSSHE---LP-----GDQLLEEISRVLKPGG   84 (271)
Q Consensus        16 s~~mv~~ar~~~~~~-~~-~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~l~~---~~-----~~~~L~ei~RvLKPGG   84 (271)
                      ++.|++.++++.... .. ....++.++.+|+.. ++..+++||+|++....++   -+     ...++++++|+|||||
T Consensus       110 d~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG  189 (314)
T 1uir_A          110 DGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGG  189 (314)
T ss_dssp             CHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEE
T ss_pred             CHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCc
Confidence            578899999875220 00 124678999999876 4555789999999765554   21     2789999999999999


Q ss_pred             EEEEEec
Q 024162           85 TILIYKK   91 (271)
Q Consensus        85 ~l~i~~~   91 (271)
                      +|++...
T Consensus       190 ~lv~~~~  196 (314)
T 1uir_A          190 VMGMQTG  196 (314)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEcc
Confidence            9999754

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=97.07  E-value=0.0011  Score=58.72  Aligned_cols=77  Identities=14%  Similarity=0.137  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHhCchhh-hcCCCCeEEEeccCCC-CCCCCCceeEEEeccccccCC-----hHHHHHHHHHhccCCcEEEE
Q 024162           16 VSAVLNAIRDLGDEAV-EQCDPQIITQASSLSQ-LPVESFSIDTVLSISSSHELP-----GDQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~-~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~l~~~~-----~~~~L~ei~RvLKPGG~l~i   88 (271)
                      ++.|++.+|+...... .....++.++.+|+.. ++...++||+|++....++.+     ..+++++++|+|||||.|++
T Consensus       108 d~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~  187 (275)
T 1iy9_A          108 DGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA  187 (275)
T ss_dssp             CHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            5788999998752210 1124678999999865 444567999999955433322     36899999999999999999


Q ss_pred             EecC
Q 024162           89 YKKL   92 (271)
Q Consensus        89 ~~~~   92 (271)
                      ....
T Consensus       188 ~~~~  191 (275)
T 1iy9_A          188 QTDN  191 (275)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            8543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=97.06  E-value=0.0014  Score=60.04  Aligned_cols=69  Identities=13%  Similarity=0.148  Sum_probs=50.7

Q ss_pred             HHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162           19 VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        19 mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      |++.++++....  ....++.++.+++++++++ ++||+|++....+++..   ...+.++.|+|||||++++..
T Consensus        84 ~~~~a~~~~~~~--~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A           84 MAQHAEVLVKSN--NLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             HHHHHHHHHHHT--TCTTTEEEEESCTTTCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             HHHHHHHHHHHc--CCCCcEEEEEcchhhCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence            556666653211  1224689999999998876 58999999876665542   678889999999999998653

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.05  E-value=0.00047  Score=59.16  Aligned_cols=72  Identities=18%  Similarity=0.162  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhCchhhhcCC-CCeEEEeccCCCC-C-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDEAVEQCD-PQIITQASSLSQL-P-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~-~~v~~~~~d~e~l-p-~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      ++.|++.+++.....  ... .++.++.+++.++ + +++++||+|++...   ... ..++.+++|+|||||.|++.+.
T Consensus        90 ~~~~~~~a~~~~~~~--g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~dn~  164 (221)
T 3dr5_A           90 ESEHQRQAKALFREA--GYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVS---PMDLKALVDAAWPLLRRGGALVLADA  164 (221)
T ss_dssp             CHHHHHHHHHHHHHT--TCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCC---TTTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred             CHHHHHHHHHHHHHc--CCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcCc---HHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            677888888774221  112 3689999988654 2 44789999998543   223 6799999999999999998664


Q ss_pred             C
Q 024162           92 L   92 (271)
Q Consensus        92 ~   92 (271)
                      .
T Consensus       165 ~  165 (221)
T 3dr5_A          165 L  165 (221)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.05  E-value=0.0045  Score=58.68  Aligned_cols=82  Identities=18%  Similarity=0.221  Sum_probs=54.6

Q ss_pred             EEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEec------cccccCCh-------
Q 024162            5 VLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSI------SSSHELPG-------   69 (271)
Q Consensus         5 vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~------~~l~~~~~-------   69 (271)
                      .++..|.+    +.+++.++++...   ....++.++++|+..++  +++++||+|++.      ..++..++       
T Consensus       286 ~v~a~D~s----~~~l~~~~~~~~~---~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~  358 (450)
T 2yxl_A          286 KIYAFDVD----KMRMKRLKDFVKR---MGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLRE  358 (450)
T ss_dssp             EEEEECSC----HHHHHHHHHHHHH---TTCCSEEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCT
T ss_pred             EEEEEcCC----HHHHHHHHHHHHH---cCCCcEEEEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCH
Confidence            45555544    4556666555311   01136889999998876  666889999962      12222221       


Q ss_pred             ----------HHHHHHHHHhccCCcEEEEEecCC
Q 024162           70 ----------DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        70 ----------~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                                ..+|.+++++|||||+|++++...
T Consensus       359 ~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          359 DKINEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence                      468999999999999999998764

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.99  E-value=0.00095  Score=60.42  Aligned_cols=73  Identities=16%  Similarity=0.082  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhCchh--------hhcCCCCeEEEeccCCCC--CCCCCceeEEEeccccccCChHHHHHHHHHhccCCcE
Q 024162           16 VSAVLNAIRDLGDEA--------VEQCDPQIITQASSLSQL--PVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGT   85 (271)
Q Consensus        16 s~~mv~~ar~~~~~~--------~~~~~~~v~~~~~d~e~l--p~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~   85 (271)
                      ++.|++.+++.....        ......++.++.+++.++  ++++++||+|++.....    ..++.+++++|||||+
T Consensus       139 ~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~----~~~l~~~~~~LkpgG~  214 (336)
T 2b25_A          139 RKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNP----HVTLPVFYPHLKHGGV  214 (336)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSST----TTTHHHHGGGEEEEEE
T ss_pred             CHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccCCCCeeEEEECCCCH----HHHHHHHHHhcCCCcE
Confidence            566777777653210        000124689999999887  57778999999854322    3478999999999999


Q ss_pred             EEEEecC
Q 024162           86 ILIYKKL   92 (271)
Q Consensus        86 l~i~~~~   92 (271)
                      |++..+.
T Consensus       215 lv~~~~~  221 (336)
T 2b25_A          215 CAVYVVN  221 (336)
T ss_dssp             EEEEESS
T ss_pred             EEEEeCC
Confidence            9988764

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=96.97  E-value=0.0011  Score=61.51  Aligned_cols=77  Identities=10%  Similarity=0.123  Sum_probs=53.0

Q ss_pred             CCCCCCCCCceeEEEeccccccCCh-H---------------------------------HHHHHHHHhccCCcEEEEEe
Q 024162           45 LSQLPVESFSIDTVLSISSSHELPG-D---------------------------------QLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        45 ~e~lp~~~~sfD~V~s~~~l~~~~~-~---------------------------------~~L~ei~RvLKPGG~l~i~~   90 (271)
                      .-.-.|++++||+|+|++++||+.. +                                 .+|+..+|.|+|||++++..
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~  209 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            3345799999999999999999854 2                                 23888899999999999998


Q ss_pred             cCCCCcc-------cHHHHHHHHHHHHHHcCCcchhhh
Q 024162           91 KLTSDKG-------DVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        91 ~~~~~~~-------e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                      .+.+...       .+-.......+.+...|.+..+.+
T Consensus       210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~  247 (359)
T 1m6e_X          210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKM  247 (359)
T ss_dssp             EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTT
T ss_pred             ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhh
Confidence            7764321       111222233344566787765443

>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.00039  Score=55.86  Aligned_cols=101  Identities=15%  Similarity=0.171  Sum_probs=63.1

Q ss_pred             ccEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCe-EEEeccC--CCCCCCCCceeEEEeccccc---cCChHHHHHHH
Q 024162            3 SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQI-ITQASSL--SQLPVESFSIDTVLSISSSH---ELPGDQLLEEI   76 (271)
Q Consensus         3 ~~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v-~~~~~d~--e~lp~~~~sfD~V~s~~~l~---~~~~~~~L~ei   76 (271)
                      ...|++-..+...-++.++.++....+.   .+..+ .+...++  -...+++++||.|+......   ..-+..+++.+
T Consensus         8 ~~~LLL~~Psv~t~pe~le~~k~~~~~~---~~~~~d~qmlDRLa~G~VsLp~stYD~V~~lt~~~~~~~~l~r~li~~l   84 (136)
T 2km1_A            8 KTGLLLIHPAVTTTPELVENTKAQAASK---KVKFVDQFLINKLNDGSITLENAKYETVHYLTPEAQTDIKFPKKLISVL   84 (136)
T ss_dssp             EEEEEEECHHHHTSHHHHHHHHHHHHHT---TEEEEEEEEHHHHHHTCCCCCSSSCCSEEEECCCSSCSCCCCHHHHHHH
T ss_pred             CCeEEecCCcccCCHHHHHHHHHhhhcc---ccchhhHHHHHHHhcCcccCCcccccEEEEecCCccchhhcCHHHHHHH
Confidence            3566666666555566666666543210   00011 1222233  24568899999999865322   12238999999


Q ss_pred             HHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchh
Q 024162           77 SRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  119 (271)
Q Consensus        77 ~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~  119 (271)
                      ++.|||||+|..  ..     .      ....++.++||+...
T Consensus        85 ~~aLkpgG~L~g--l~-----~------~~~~EailaGfvv~~  114 (136)
T 2km1_A           85 ADSLKPNGSLIG--LS-----D------IYKVDALINGFEIIN  114 (136)
T ss_dssp             HTTCCTTCCEEC--CC-----H------HHHHHHHHHTEEEEC
T ss_pred             HHHhCCCCEEEe--cC-----c------chhhHHHhhccEecc
Confidence            999999999996  11     1      346789999999655

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=96.95  E-value=0.00086  Score=58.19  Aligned_cols=72  Identities=17%  Similarity=0.119  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CCCC--CCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPVE--SFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp~~--~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      ++.|++.++++....  ....+|.++++++.+ ++..  .++||+|++...   ... ..++.++.|+|||||+|++.+.
T Consensus        97 s~~~~~~a~~~~~~~--g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A           97 DAHHAQVARENLQLA--GVDQRVTLREGPALQSLESLGECPAFDLIFIDAD---KPNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             CHHHHHHHHHHHHHT--TCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             CHHHHHHHHHHHHHc--CCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            577888888764221  122468999999865 4433  348999998542   333 7899999999999999998875


Q ss_pred             C
Q 024162           92 L   92 (271)
Q Consensus        92 ~   92 (271)
                      .
T Consensus       172 ~  172 (248)
T 3tfw_A          172 V  172 (248)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=96.95  E-value=3.9e-05  Score=65.77  Aligned_cols=72  Identities=11%  Similarity=0.021  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEe
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ++.|++.++++....  ....++.++++|+.+++ ++++||+|++...+++... ...+.+++++|+|||.+++..
T Consensus       109 s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          109 DPVKIALARNNAEVY--GIADKIEFICGDFLLLA-SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             CHHHHHHHHHHHHHT--TCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHc--CCCcCeEEEECChHHhc-ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence            577888888764211  01136899999998877 6789999999988888766 557889999999999976553

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.94  E-value=0.0019  Score=59.19  Aligned_cols=76  Identities=17%  Similarity=0.221  Sum_probs=53.7

Q ss_pred             cHHHHHHHHHHhCchh-hhcCCCCeEEEeccCCCC--CCCCCceeEEEecccccc--CC---hHHHHHHHHHhccCCcEE
Q 024162           15 PVSAVLNAIRDLGDEA-VEQCDPQIITQASSLSQL--PVESFSIDTVLSISSSHE--LP---GDQLLEEISRVLKPGGTI   86 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~-~~~~~~~v~~~~~d~e~l--p~~~~sfD~V~s~~~l~~--~~---~~~~L~ei~RvLKPGG~l   86 (271)
                      .++.|++.+|++.... ......++.++++|+...  .+++++||+|++.....+  ..   ...++++++|+|||||+|
T Consensus       152 is~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~l  231 (334)
T 1xj5_A          152 IDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVV  231 (334)
T ss_dssp             SCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEE
T ss_pred             CCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEE
Confidence            3678899999875321 011235789999998654  245679999998543211  11   278999999999999999


Q ss_pred             EEEe
Q 024162           87 LIYK   90 (271)
Q Consensus        87 ~i~~   90 (271)
                      ++..
T Consensus       232 v~~~  235 (334)
T 1xj5_A          232 CTQA  235 (334)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9974

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=96.93  E-value=0.00088  Score=57.40  Aligned_cols=72  Identities=11%  Similarity=0.106  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-C-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-P-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p-~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.++++....  ....++.++.+++.+. + ..+++||+|++...   ... ..++++++++|||||+|++.+..
T Consensus       104 ~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d~~~  178 (232)
T 3ntv_A          104 NETMIQYAKQNLATY--HFENQVRIIEGNALEQFENVNDKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLVITDNVL  178 (232)
T ss_dssp             CHHHHHHHHHHHHHT--TCTTTEEEEESCGGGCHHHHTTSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred             CHHHHHHHHHHHHHc--CCCCcEEEEECCHHHHHHhhccCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence            577888888764221  1123689999999764 4 44789999997542   333 78999999999999999886543

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=96.92  E-value=0.0017  Score=56.36  Aligned_cols=54  Identities=13%  Similarity=0.090  Sum_probs=41.6

Q ss_pred             CCeEEEeccCCCC-CCC-----CCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           36 PQIITQASSLSQL-PVE-----SFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        36 ~~v~~~~~d~e~l-p~~-----~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .+|.++++++.++ +..     .++||+|++...   ... ..++++++|+|||||.|++.+..
T Consensus       112 ~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~  172 (242)
T 3r3h_A          112 HKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIF  172 (242)
T ss_dssp             TTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             CcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence            4689999998654 321     579999998543   233 77899999999999999997754

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=96.92  E-value=0.0019  Score=57.23  Aligned_cols=53  Identities=13%  Similarity=0.204  Sum_probs=42.3

Q ss_pred             CeEEE--eccCCCCCCCCCceeEEEeccccccCC----h-H---HHHHHHHHhccCCc--EEEEEecC
Q 024162           37 QIITQ--ASSLSQLPVESFSIDTVLSISSSHELP----G-D---QLLEEISRVLKPGG--TILIYKKL   92 (271)
Q Consensus        37 ~v~~~--~~d~e~lp~~~~sfD~V~s~~~l~~~~----~-~---~~L~ei~RvLKPGG--~l~i~~~~   92 (271)
                      ++.++  ++|+..++  +++||+|++..+ ++..    + .   .+|.+++|+|||||  .|++..+.
T Consensus       123 ~v~~~~~~~D~~~l~--~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          123 NIVKFKSRVDIHTLP--VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             GGEEEECSCCTTTSC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             CeEEEecccCHhHCC--CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            67888  89998876  789999999765 3322    1 1   37899999999999  99998876

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=96.91  E-value=0.0006  Score=57.14  Aligned_cols=72  Identities=14%  Similarity=0.151  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-CCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-PVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.++++....  ....++.++++++.++ +..++ ||+|++...  ......++++++|+|||||+|++.+..
T Consensus        90 ~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~--~~~~~~~l~~~~~~LkpgG~lv~~~~~  162 (210)
T 3c3p_A           90 DRDNVEHARRMLHDN--GLIDRVELQVGDPLGIAAGQRD-IDILFMDCD--VFNGADVLERMNRCLAKNALLIAVNAL  162 (210)
T ss_dssp             CHHHHHHHHHHHHHH--SGGGGEEEEESCHHHHHTTCCS-EEEEEEETT--TSCHHHHHHHHGGGEEEEEEEEEESSS
T ss_pred             CHHHHHHHHHHHHHC--CCCceEEEEEecHHHHhccCCC-CCEEEEcCC--hhhhHHHHHHHHHhcCCCeEEEEECcc
Confidence            577888888764211  1123588999988653 55456 999998632  112278999999999999999987643

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=96.90  E-value=0.0019  Score=57.87  Aligned_cols=77  Identities=13%  Similarity=0.072  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhCchh-hhcCCCCeEEEeccCCC-CCCCCCceeEEEeccccccC------ChHHHHHHHHHhccCCcEEE
Q 024162           16 VSAVLNAIRDLGDEA-VEQCDPQIITQASSLSQ-LPVESFSIDTVLSISSSHEL------PGDQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        16 s~~mv~~ar~~~~~~-~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~l~~~------~~~~~L~ei~RvLKPGG~l~   87 (271)
                      ++.|++.++++.... ......++.++.+|+.. ++...++||+|++....++.      ....++++++++|||||+|+
T Consensus       123 d~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv  202 (296)
T 1inl_A          123 DGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFS  202 (296)
T ss_dssp             CHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEE
T ss_pred             CHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence            578888888875220 01124678999998765 44556789999985432212      12789999999999999999


Q ss_pred             EEecC
Q 024162           88 IYKKL   92 (271)
Q Consensus        88 i~~~~   92 (271)
                      +....
T Consensus       203 ~~~~~  207 (296)
T 1inl_A          203 AETED  207 (296)
T ss_dssp             EECCC
T ss_pred             EEccC
Confidence            98543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.88  E-value=0.0016  Score=58.76  Aligned_cols=77  Identities=10%  Similarity=0.123  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhCchh-hhcCCCCeEEEeccCCC-CCCCCCceeEEEeccccccCC-----hHHHHHHHHHhccCCcEEEE
Q 024162           16 VSAVLNAIRDLGDEA-VEQCDPQIITQASSLSQ-LPVESFSIDTVLSISSSHELP-----GDQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~~-~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~l~~~~-----~~~~L~ei~RvLKPGG~l~i   88 (271)
                      ++.|++.++++...- ......++.++.+|+.. ++..+++||+|++....++.+     ...++++++|+|||||+|++
T Consensus       128 d~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~  207 (304)
T 2o07_A          128 DEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCC  207 (304)
T ss_dssp             CHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEE
Confidence            678899999875220 01124678999998865 455578999999855433221     25789999999999999999


Q ss_pred             EecC
Q 024162           89 YKKL   92 (271)
Q Consensus        89 ~~~~   92 (271)
                      ....
T Consensus       208 ~~~~  211 (304)
T 2o07_A          208 QGEC  211 (304)
T ss_dssp             EEEC
T ss_pred             ecCC
Confidence            8743

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.87  E-value=0.0074  Score=56.70  Aligned_cols=82  Identities=18%  Similarity=0.202  Sum_probs=55.1

Q ss_pred             cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEecc------ccccCCh------
Q 024162            4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSIS------SSHELPG------   69 (271)
Q Consensus         4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~------~l~~~~~------   69 (271)
                      ..++..|.+..-...+.+.++..+        ..+.++++|+..++  +++++||+|++..      .++..++      
T Consensus       271 ~~v~a~D~~~~~l~~~~~~~~~~g--------~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~  342 (429)
T 1sqg_A          271 AQVVAVDIDEQRLSRVYDNLKRLG--------MKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRR  342 (429)
T ss_dssp             CEEEEEESSTTTHHHHHHHHHHTT--------CCCEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHHcC--------CCeEEEeCchhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCC
Confidence            456666666555544444443332        34678889998876  6678999999621      1222221      


Q ss_pred             -----------HHHHHHHHHhccCCcEEEEEecCC
Q 024162           70 -----------DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        70 -----------~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                                 ..+|.+++++|||||+|++++...
T Consensus       343 ~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~  377 (429)
T 1sqg_A          343 DRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  377 (429)
T ss_dssp             TTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence                       378999999999999999998653

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.86  E-value=0.00069  Score=61.56  Aligned_cols=76  Identities=14%  Similarity=0.121  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhCchhh-hcCCCCeEEEeccCCC-CCCCCCceeEEEeccccccCCh-----HHHHHHHHHhccCCcEEEE
Q 024162           16 VSAVLNAIRDLGDEAV-EQCDPQIITQASSLSQ-LPVESFSIDTVLSISSSHELPG-----DQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~-~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~l~~~~~-----~~~L~ei~RvLKPGG~l~i   88 (271)
                      ++.|++.+|++..... .....++.++.+|+.. ++..+++||+|++....++.+.     ..++++++|+|+|||+|++
T Consensus       141 d~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~  220 (314)
T 2b2c_A          141 DEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSS  220 (314)
T ss_dssp             CHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEE
Confidence            6789999998752210 1124678999998865 3445778999998553332221     6889999999999999999


Q ss_pred             Eec
Q 024162           89 YKK   91 (271)
Q Consensus        89 ~~~   91 (271)
                      ...
T Consensus       221 ~~~  223 (314)
T 2b2c_A          221 QGE  223 (314)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            863

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=96.85  E-value=0.0013  Score=56.81  Aligned_cols=53  Identities=15%  Similarity=0.130  Sum_probs=39.5

Q ss_pred             EEeccCCCCCC-----CCCceeEEEeccccccCC--------h--HHHHHHHHHhccCCcEEEEEecC
Q 024162           40 TQASSLSQLPV-----ESFSIDTVLSISSSHELP--------G--DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        40 ~~~~d~e~lp~-----~~~sfD~V~s~~~l~~~~--------~--~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      +.++|+.+...     ...+||+|++...++...        .  ..++++++++|||||+|++....
T Consensus       149 ~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  216 (250)
T 1o9g_A          149 IRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRS  216 (250)
T ss_dssp             EEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred             eeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence            88898876421     445899999976544332        1  58999999999999999995543

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=96.79  E-value=0.0022  Score=57.11  Aligned_cols=54  Identities=24%  Similarity=0.262  Sum_probs=42.7

Q ss_pred             CeEEE--eccCCCCCCCCCceeEEEeccccccCC----h-H---HHHHHHHHhccCCc--EEEEEecCC
Q 024162           37 QIITQ--ASSLSQLPVESFSIDTVLSISSSHELP----G-D---QLLEEISRVLKPGG--TILIYKKLT   93 (271)
Q Consensus        37 ~v~~~--~~d~e~lp~~~~sfD~V~s~~~l~~~~----~-~---~~L~ei~RvLKPGG--~l~i~~~~~   93 (271)
                      ++.++  ++|+..+|  +++||+|++..+ ++..    + .   .+|.++.|+|||||  .|++..+.+
T Consensus       131 ~v~~~~~~~D~~~l~--~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~  196 (276)
T 2wa2_A          131 NLITFKSKVDVTKME--PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNP  196 (276)
T ss_dssp             GGEEEECSCCGGGCC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             CeEEEeccCcHhhCC--CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCC
Confidence            67888  89998876  789999999766 3322    1 1   37999999999999  999987763

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=96.77  E-value=0.0012  Score=58.72  Aligned_cols=77  Identities=17%  Similarity=0.133  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhCchh-hhcCCCCeEEEeccCCCC-CCCCCceeEEEeccccccCC-----hHHHHHHHHHhccCCcEEEE
Q 024162           16 VSAVLNAIRDLGDEA-VEQCDPQIITQASSLSQL-PVESFSIDTVLSISSSHELP-----GDQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~~-~~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~l~~~~-----~~~~L~ei~RvLKPGG~l~i   88 (271)
                      ++.|++.++++.... ......++.++.+|+... +...++||+|++....++.+     ...++++++|+|||||+|++
T Consensus       111 d~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~  190 (283)
T 2i7c_A          111 DETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVA  190 (283)
T ss_dssp             CHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            578899999874211 011246789999998653 33367899999854333222     16899999999999999999


Q ss_pred             EecC
Q 024162           89 YKKL   92 (271)
Q Consensus        89 ~~~~   92 (271)
                      ....
T Consensus       191 ~~~~  194 (283)
T 2i7c_A          191 QCES  194 (283)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            8643

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=96.76  E-value=0.0006  Score=54.51  Aligned_cols=73  Identities=8%  Similarity=0.099  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-C-CC--CCceeEEEeccccccCChHHHHHHHH--HhccCCcEEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-P-VE--SFSIDTVLSISSSHELPGDQLLEEIS--RVLKPGGTILIY   89 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p-~~--~~sfD~V~s~~~l~~~~~~~~L~ei~--RvLKPGG~l~i~   89 (271)
                      ++.|++.++++....   . .++.++++++.+. + ++  .++||+|++...++ -....+++.+.  ++|||||++++.
T Consensus        72 ~~~~~~~a~~~~~~~---~-~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~~~~~L~~gG~~~~~  146 (171)
T 1ws6_A           72 DPEAVRLLKENVRRT---G-LGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             CHHHHHHHHHHHHHH---T-CCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHc---C-CceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHHhhcccCCCcEEEEE
Confidence            577888888764221   1 2678889988763 3 21  34899999987665 22266777777  999999999998


Q ss_pred             ecCC
Q 024162           90 KKLT   93 (271)
Q Consensus        90 ~~~~   93 (271)
                      ....
T Consensus       147 ~~~~  150 (171)
T 1ws6_A          147 HPKD  150 (171)
T ss_dssp             EETT
T ss_pred             eCCc
Confidence            8763

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=96.75  E-value=0.0011  Score=63.71  Aligned_cols=68  Identities=13%  Similarity=0.155  Sum_probs=50.3

Q ss_pred             HHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC-h--HHHHHHHHHhccCCcEEEEE
Q 024162           19 VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-G--DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        19 mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~-~--~~~L~ei~RvLKPGG~l~i~   89 (271)
                      |++.++++....  ....+|.++++++++++++ ++||+|++....+++. .  ...+.++.|+|||||++++.
T Consensus       192 ~l~~A~~~~~~~--gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          192 MAQHAEVLVKSN--NLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             HHHHHHHHHHHT--TCTTTEEEEESCTTTCCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             HHHHHHHHHHHc--CCCCcEEEEECchhhCccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence            777777763211  1224689999999988776 5899999977655543 2  56777889999999999854

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=96.73  E-value=0.0021  Score=56.68  Aligned_cols=71  Identities=11%  Similarity=0.041  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      ++.|++.+++.....   .-.++.++++|+..++. .++||+|++....   ....++.++.++|||||+++++.+..
T Consensus       152 s~~av~~a~~n~~~n---~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~---~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          152 NPTAYHYLCENIKLN---KLNNVIPILADNRDVEL-KDVADRVIMGYVH---KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             CHHHHHHHHHHHHHT---TCSSEEEEESCGGGCCC-TTCEEEEEECCCS---SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHc---CCCCEEEEECChHHcCc-cCCceEEEECCcc---cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            567777777753211   11357899999988754 6789999987543   23678999999999999999998753

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=96.73  E-value=0.00036  Score=59.60  Aligned_cols=70  Identities=9%  Similarity=0.020  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEe
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ++.|+++++++....  ....++.+  .+.... .+.+.||+|+++.++|++.+ +..+..+++.|||||.|+-.+
T Consensus        82 ~~~~leiar~~~~~~--g~~~~v~~--~d~~~~-~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A           82 DRAEIAFLSSIIGKL--KTTIKYRF--LNKESD-VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             CHHHHHHHHHHHHHS--CCSSEEEE--ECCHHH-HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHhc--CCCccEEE--eccccc-CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence            688999999985321  01113444  555433 56788999999999999954 667779999999999998887

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=96.72  E-value=9.3e-05  Score=64.32  Aligned_cols=63  Identities=16%  Similarity=0.075  Sum_probs=39.8

Q ss_pred             CCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe---cCCCC--------c---ccHHHHHHHHHHHHHHcCC
Q 024162           50 VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK---KLTSD--------K---GDVDKAISALEGKLLLAGF  115 (271)
Q Consensus        50 ~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~---~~~~~--------~---~e~~~~~~~l~~~l~laGF  115 (271)
                      ++..+||++++..       ..+|++++|+|||||+|++..   +....        .   .......+.+...+..+||
T Consensus       104 ~d~~~~D~v~~~l-------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf  176 (232)
T 3opn_A          104 PSFTSIDVSFISL-------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGF  176 (232)
T ss_dssp             CSEEEECCSSSCG-------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTE
T ss_pred             CCEEEEEEEhhhH-------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCC
Confidence            3445666655432       578999999999999999873   11110        0   0011234567777889999


Q ss_pred             cchh
Q 024162          116 LDAQ  119 (271)
Q Consensus       116 ~~v~  119 (271)
                      ..+.
T Consensus       177 ~v~~  180 (232)
T 3opn_A          177 SVKG  180 (232)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8644

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=96.71  E-value=0.0024  Score=54.26  Aligned_cols=73  Identities=15%  Similarity=0.089  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-CCC--CCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-PVE--SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p~~--~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.+++.++++....  ....++.++.+++... +..  +++||+|++....+  ....+++++.++|||||+|++.+..
T Consensus        87 ~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~--~~~~~l~~~~~~L~pgG~lv~~~~~  162 (233)
T 2gpy_A           87 DERRYEEAHKHVKAL--GLESRIELLFGDALQLGEKLELYPLFDVLFIDAAKG--QYRRFFDMYSPMVRPGGLILSDNVL  162 (233)
T ss_dssp             CHHHHHHHHHHHHHT--TCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEGGGS--CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred             CHHHHHHHHHHHHHc--CCCCcEEEEECCHHHHHHhcccCCCccEEEECCCHH--HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            567778887763211  1123588999988764 433  57899999865532  2278999999999999999998654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=96.70  E-value=0.0045  Score=54.48  Aligned_cols=82  Identities=11%  Similarity=0.043  Sum_probs=54.5

Q ss_pred             EEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCC----CCCceeEEEeccccc---cC----------
Q 024162            5 VLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV----ESFSIDTVLSISSSH---EL----------   67 (271)
Q Consensus         5 vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~----~~~sfD~V~s~~~l~---~~----------   67 (271)
                      -++..|.    ++.+++.++++...   ....++.++.+|+..++.    ..++||+|++.....   .+          
T Consensus       110 ~v~avD~----~~~~l~~~~~~~~~---~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~  182 (274)
T 3ajd_A          110 TIVAVEI----SKTRTKALKSNINR---MGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEED  182 (274)
T ss_dssp             EEEEEES----CHHHHHHHHHHHHH---TTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC------------HHH
T ss_pred             EEEEECC----CHHHHHHHHHHHHH---hCCCcEEEEeCChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHH
Confidence            3444454    45666666665321   111368899999887765    367899999852211   11          


Q ss_pred             -----Ch-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           68 -----PG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        68 -----~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                           .. ..+|.+++++|||||+|++++...
T Consensus       183 ~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          183 IKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             HTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence                 12 788999999999999999988654

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=96.68  E-value=0.0027  Score=57.24  Aligned_cols=67  Identities=13%  Similarity=0.073  Sum_probs=47.0

Q ss_pred             CCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEE---ecCCC--------C---cccHHHHHHHHHHHHHHcCCc
Q 024162           51 ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY---KKLTS--------D---KGDVDKAISALEGKLLLAGFL  116 (271)
Q Consensus        51 ~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~---~~~~~--------~---~~e~~~~~~~l~~~l~laGF~  116 (271)
                      +..+||+|++..+++++  ..+|.+++|+|||||+|++.   .+..+        .   ..........+...+..+||.
T Consensus       148 ~~~~fD~v~~d~sf~sl--~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~  225 (291)
T 3hp7_A          148 TEGLPSFASIDVSFISL--NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFS  225 (291)
T ss_dssp             TTCCCSEEEECCSSSCG--GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEE
T ss_pred             CCCCCCEEEEEeeHhhH--HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCE
Confidence            44579999987766654  67999999999999999987   23221        1   011233455677778899998


Q ss_pred             chh
Q 024162          117 DAQ  119 (271)
Q Consensus       117 ~v~  119 (271)
                      ...
T Consensus       226 v~~  228 (291)
T 3hp7_A          226 VKG  228 (291)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            644

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=96.65  E-value=0.0016  Score=59.11  Aligned_cols=77  Identities=18%  Similarity=0.141  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhCchh-hhcCCCCeEEEeccCCC-CCCCCCceeEEEeccccccCC-----hHHHHHHHHHhccCCcEEEE
Q 024162           16 VSAVLNAIRDLGDEA-VEQCDPQIITQASSLSQ-LPVESFSIDTVLSISSSHELP-----GDQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~~-~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~l~~~~-----~~~~L~ei~RvLKPGG~l~i   88 (271)
                      ++.|++.++++.... ......++.++.+|+.+ ++..+++||+|++....++-+     ...++++++|+|||||+|++
T Consensus       149 s~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~  228 (321)
T 2pt6_A          149 DETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVA  228 (321)
T ss_dssp             CHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            678999999875320 01123678999998765 333467899999854322211     27899999999999999999


Q ss_pred             EecC
Q 024162           89 YKKL   92 (271)
Q Consensus        89 ~~~~   92 (271)
                      ....
T Consensus       229 ~~~~  232 (321)
T 2pt6_A          229 QCES  232 (321)
T ss_dssp             EECC
T ss_pred             EcCC
Confidence            8644

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=96.65  E-value=0.0024  Score=55.17  Aligned_cols=54  Identities=13%  Similarity=0.121  Sum_probs=42.7

Q ss_pred             CCeEEEeccCCCC---CCCC-CceeEEEeccccccCChHHHHHHHHH-hccCCcEEEEEec
Q 024162           36 PQIITQASSLSQL---PVES-FSIDTVLSISSSHELPGDQLLEEISR-VLKPGGTILIYKK   91 (271)
Q Consensus        36 ~~v~~~~~d~e~l---p~~~-~sfD~V~s~~~l~~~~~~~~L~ei~R-vLKPGG~l~i~~~   91 (271)
                      .+|.++++++..+   ++.. .+||+|++... | .....+|.+++| +|||||+|++.+.
T Consensus       130 ~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~-~-~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          130 ENITLHQGDCSDLTTFEHLREMAHPLIFIDNA-H-ANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             TTEEEEECCSSCSGGGGGGSSSCSSEEEEESS-C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             CceEEEECcchhHHHHHhhccCCCCEEEECCc-h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            5689999999884   6544 47999997554 3 334789999998 9999999999864

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=96.63  E-value=0.0024  Score=60.70  Aligned_cols=55  Identities=16%  Similarity=0.006  Sum_probs=40.4

Q ss_pred             CCeEEEeccCCCC--CC--CCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 024162           36 PQIITQASSLSQL--PV--ESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        36 ~~v~~~~~d~e~l--p~--~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .++.+++++....  ++  ..++||+|+++..+ +.++ ..+|++++|+|||||+|++.+.
T Consensus       301 ~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~  360 (433)
T 1u2z_A          301 NNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKS  360 (433)
T ss_dssp             CCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             CceEEEEcCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeec
Confidence            4688888754322  22  25789999986555 3344 7889999999999999999864

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=96.57  E-value=0.0028  Score=57.22  Aligned_cols=56  Identities=13%  Similarity=0.061  Sum_probs=42.1

Q ss_pred             CCeEEEec-cCCCCCCCCCceeEEEeccccc---cCCh-H---HHHHHHHHhccCCcEEEEEecCC
Q 024162           36 PQIITQAS-SLSQLPVESFSIDTVLSISSSH---ELPG-D---QLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        36 ~~v~~~~~-d~e~lp~~~~sfD~V~s~~~l~---~~~~-~---~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      ..+.++++ |+..+|  ..+||+|++..+.+   +..+ .   .+|.+++|+|||||.|++..+..
T Consensus       131 ~~v~~~~~~D~~~l~--~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          131 NLVRLQSGVDVFFIP--PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             GGEEEECSCCTTTSC--CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             CCeEEEeccccccCC--cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            45888888 777665  56899999965543   3323 2   57899999999999999977653

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=96.53  E-value=0.0065  Score=53.68  Aligned_cols=103  Identities=13%  Similarity=0.077  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhCchhh-hcCC------CCeEEEeccCCCC--CC----CCCceeEEEeccccccCCh-HHHHHHHHHhcc
Q 024162           16 VSAVLNAIRDLGDEAV-EQCD------PQIITQASSLSQL--PV----ESFSIDTVLSISSSHELPG-DQLLEEISRVLK   81 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~-~~~~------~~v~~~~~d~e~l--p~----~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLK   81 (271)
                      +..|++.+++...... ...+      .++.+...+..+.  .+    .+.+||+|++..++++... ..+++++.++|+
T Consensus       112 ~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk  191 (281)
T 3bzb_A          112 DPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLA  191 (281)
T ss_dssp             CHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBC
T ss_pred             CHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhc
Confidence            3677777776531000 0011      2466664443321  11    4678999999888887766 899999999999


Q ss_pred             ---C--CcEEEEEecCCCCcccHHHHHHHHHHHHHHcC-Ccchhh
Q 024162           82 ---P--GGTILIYKKLTSDKGDVDKAISALEGKLLLAG-FLDAQR  120 (271)
Q Consensus        82 ---P--GG~l~i~~~~~~~~~e~~~~~~~l~~~l~laG-F~~v~~  120 (271)
                         |  ||++++.-.....  .+......+...+..+| |.....
T Consensus       192 ~~~p~~gG~l~v~~~~~~~--~~~~~~~~~~~~l~~~G~f~v~~~  234 (281)
T 3bzb_A          192 LPANDPTAVALVTFTHHRP--HLAERDLAFFRLVNADGALIAEPW  234 (281)
T ss_dssp             CTTTCTTCEEEEEECC----------CTHHHHHHHHSTTEEEEEE
T ss_pred             ccCCCCCCEEEEEEEeeec--ccchhHHHHHHHHHhcCCEEEEEe
Confidence               9  9998775432110  00011124445677789 876443

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.40  E-value=0.0025  Score=56.61  Aligned_cols=75  Identities=11%  Similarity=0.046  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHhCchhh-hc-------CCCCeEEEeccCCCC-CCCCCceeEEEeccccccCC-----hHHHHHHHHHhcc
Q 024162           16 VSAVLNAIRDLGDEAV-EQ-------CDPQIITQASSLSQL-PVESFSIDTVLSISSSHELP-----GDQLLEEISRVLK   81 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~-~~-------~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~l~~~~-----~~~~L~ei~RvLK   81 (271)
                      ++.|++.+|++. ... ..       ...++.++.+|+... +. +++||+|++....++.+     ...++++++|+|+
T Consensus       107 d~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~  184 (281)
T 1mjf_A          107 DEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALN  184 (281)
T ss_dssp             CHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEE
T ss_pred             CHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcC
Confidence            578888888875 110 11       246789999987542 33 67899999865433211     3778999999999


Q ss_pred             CCcEEEEEecC
Q 024162           82 PGGTILIYKKL   92 (271)
Q Consensus        82 PGG~l~i~~~~   92 (271)
                      |||+|++....
T Consensus       185 pgG~lv~~~~~  195 (281)
T 1mjf_A          185 NPGIYVTQAGS  195 (281)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CCcEEEEEcCC
Confidence            99999998543

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=96.39  E-value=0.014  Score=55.92  Aligned_cols=83  Identities=11%  Similarity=0.093  Sum_probs=54.2

Q ss_pred             cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCC-CCCceeEEEecc------cccc-------CC-
Q 024162            4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV-ESFSIDTVLSIS------SSHE-------LP-   68 (271)
Q Consensus         4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~-~~~sfD~V~s~~------~l~~-------~~-   68 (271)
                      +.++..|.    ++.+++.++++....   ...++.++++|+..++. .+++||+|++..      .+..       +. 
T Consensus       143 g~V~avDi----s~~~l~~~~~n~~r~---g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~  215 (479)
T 2frx_A          143 GAILANEF----SASRVKVLHANISRC---GISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSP  215 (479)
T ss_dssp             SEEEEECS----SHHHHHHHHHHHHHH---TCCSEEEECCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCH
T ss_pred             CEEEEEEC----CHHHHHHHHHHHHHc---CCCcEEEEeCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCH
Confidence            34555555    455666666553211   11368899999988764 567899999721      1111       11 


Q ss_pred             ---------hHHHHHHHHHhccCCcEEEEEecCC
Q 024162           69 ---------GDQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        69 ---------~~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                               ...+|.+++++|||||+|++++...
T Consensus       216 ~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          216 ESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence                     1468999999999999999988654

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=96.39  E-value=0.0029  Score=52.87  Aligned_cols=57  Identities=16%  Similarity=0.177  Sum_probs=41.7

Q ss_pred             CCeEEEeccCCCCCCC-----------CCceeEEEeccccccC----Ch--------HHHHHHHHHhccCCcEEEEEecC
Q 024162           36 PQIITQASSLSQLPVE-----------SFSIDTVLSISSSHEL----PG--------DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~-----------~~sfD~V~s~~~l~~~----~~--------~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.++++|+.+.+..           .++||+|++.......    .+        ..++.++.++|||||+|++..+.
T Consensus        62 ~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~  141 (191)
T 3dou_A           62 AGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ  141 (191)
T ss_dssp             TTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence            3688999999886521           1499999995432211    11        46788999999999999998875

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=96.36  E-value=0.0025  Score=58.26  Aligned_cols=99  Identities=10%  Similarity=0.031  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCC----CCceeEEEecccc----------ccCCh-HHHHHHHHHhc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVE----SFSIDTVLSISSS----------HELPG-DQLLEEISRVL   80 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~----~~sfD~V~s~~~l----------~~~~~-~~~L~ei~RvL   80 (271)
                      ++.|++.+++..... ...+.++.++++|+.++...    ..+||+|++....          ++..+ ..++.++.++|
T Consensus       184 s~~al~~a~~n~~~~-gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~L  262 (332)
T 2igt_A          184 SKKAIGWAKENQVLA-GLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREIL  262 (332)
T ss_dssp             CHHHHHHHHHHHHHH-TCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTB
T ss_pred             CHHHHHHHHHHHHHc-CCCccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            577888888764211 01112489999998765321    5689999984321          12223 68999999999


Q ss_pred             cCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCc
Q 024162           81 KPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  116 (271)
Q Consensus        81 KPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~  116 (271)
                      ||||.|++........ ........+...+..+|+.
T Consensus       263 kpgG~lli~~~~~~~~-~~~~~~~~l~~a~~~~g~~  297 (332)
T 2igt_A          263 SPKALGLVLTAYSIRA-SFYSMHELMRETMRGAGGV  297 (332)
T ss_dssp             CTTCCEEEEEECCTTS-CHHHHHHHHHHHTTTSCSE
T ss_pred             CcCcEEEEEECCCCCC-CHHHHHHHHHHHHHHcCCe
Confidence            9999988776543221 1122122333345566764

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.36  E-value=0.0025  Score=53.61  Aligned_cols=72  Identities=17%  Similarity=0.173  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-C-CCC----CceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-P-VES----FSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p-~~~----~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i   88 (271)
                      ++.|++.++++....  ....++.++++++... + +..    ++||+|++...   ... ..++.+++++|||||+|++
T Consensus        98 ~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~  172 (225)
T 3tr6_A           98 DEKSTALAKEYWEKA--GLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD---KANTDLYYEESLKLLREGGLIAV  172 (225)
T ss_dssp             CHHHHHHHHHHHHHT--TCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHC--CCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEE
Confidence            567888888764211  1223589999988543 2 221    79999996542   223 7899999999999999999


Q ss_pred             EecC
Q 024162           89 YKKL   92 (271)
Q Consensus        89 ~~~~   92 (271)
                      .+..
T Consensus       173 ~~~~  176 (225)
T 3tr6_A          173 DNVL  176 (225)
T ss_dssp             ECSS
T ss_pred             eCCC
Confidence            8754

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=96.36  E-value=0.0025  Score=54.58  Aligned_cols=72  Identities=14%  Similarity=0.098  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC----CCCCC--CceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ----LPVES--FSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~----lp~~~--~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i   88 (271)
                      ++.+++.+++.....  ....++.++.+++.+    ++..+  ++||+|++...   ..+ ..++.++.++|||||+|++
T Consensus       106 ~~~~~~~a~~~~~~~--g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~  180 (232)
T 3cbg_A          106 DPNATAIAKKYWQKA--GVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD---KRNYPRYYEIGLNLLRRGGLMVI  180 (232)
T ss_dssp             CHHHHHHHHHHHHHH--TCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC---GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHc--CCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC---HHHHHHHHHHHHHHcCCCeEEEE
Confidence            567788887763211  112358888888643    33334  78999998643   223 7899999999999999999


Q ss_pred             EecC
Q 024162           89 YKKL   92 (271)
Q Consensus        89 ~~~~   92 (271)
                      .+..
T Consensus       181 ~~~~  184 (232)
T 3cbg_A          181 DNVL  184 (232)
T ss_dssp             ECTT
T ss_pred             eCCC
Confidence            7654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=96.32  E-value=0.0033  Score=55.47  Aligned_cols=71  Identities=13%  Similarity=0.156  Sum_probs=51.6

Q ss_pred             cHHHHHHHHHHhCchh-hhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEA-VEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~-~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.|++.+|++.... ....+.++.++.+|+....   ++||+|++...    .+..++++++|+|||||.|++....
T Consensus       102 id~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~~----dp~~~~~~~~~~L~pgG~lv~~~~~  173 (262)
T 2cmg_A          102 ADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQE----PDIHRIDGLKRMLKEDGVFISVAKH  173 (262)
T ss_dssp             SCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESSC----CCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECCC----ChHHHHHHHHHhcCCCcEEEEEcCC
Confidence            3678888888764220 0123467899999987764   78999998632    2245899999999999999997543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=96.31  E-value=0.003  Score=53.16  Aligned_cols=73  Identities=11%  Similarity=0.096  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-C-CC---CCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-P-VE---SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p-~~---~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ++.|++.++++....  ....++.++++++... + +.   .++||+|++.....  ....++.+++++|||||.|++.+
T Consensus        92 ~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~~~~L~pgG~lv~~~  167 (223)
T 3duw_A           92 SEKHADIARSNIERA--NLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWALKLSRPGTVIIGDN  167 (223)
T ss_dssp             CHHHHHHHHHHHHHT--TCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHHHHTCCTTCEEEEES
T ss_pred             CHHHHHHHHHHHHHc--CCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHHHHhcCCCcEEEEeC
Confidence            577888888764211  1223589999988643 2 21   26799999865421  12789999999999999999876


Q ss_pred             cC
Q 024162           91 KL   92 (271)
Q Consensus        91 ~~   92 (271)
                      ..
T Consensus       168 ~~  169 (223)
T 3duw_A          168 VV  169 (223)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=96.25  E-value=0.018  Score=53.08  Aligned_cols=91  Identities=18%  Similarity=0.070  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccC-------Ch--HHHHHHHHHhccCCcEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL-------PG--DQLLEEISRVLKPGGTI   86 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~-------~~--~~~L~ei~RvLKPGG~l   86 (271)
                      ++.|++.+++.....  ....++.+.++|+.++++++++||+|+++..+...       ..  ..+++++.|+|  ||.+
T Consensus       250 s~~~l~~A~~n~~~~--gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~  325 (373)
T 3tm4_A          250 YRKHLIGAEMNALAA--GVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRG  325 (373)
T ss_dssp             CHHHHHHHHHHHHHT--TCGGGCEEEECCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEE
T ss_pred             CHHHHHHHHHHHHHc--CCCCceEEEECChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeE
Confidence            678888888874221  11136899999999999988999999996543321       12  56888999999  6666


Q ss_pred             EEEecCCCCcccHHHHHHHHHHHHHHcCCcchhh
Q 024162           87 LIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        87 ~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~  120 (271)
                      ++.....          ..+.+.+...||.....
T Consensus       326 ~~i~~~~----------~~~~~~~~~~G~~~~~~  349 (373)
T 3tm4_A          326 VFITTEK----------KAIEEAIAENGFEIIHH  349 (373)
T ss_dssp             EEEESCH----------HHHHHHHHHTTEEEEEE
T ss_pred             EEEECCH----------HHHHHHHHHcCCEEEEE
Confidence            6655431          14455677789986544

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=96.16  E-value=0.022  Score=53.08  Aligned_cols=68  Identities=15%  Similarity=0.198  Sum_probs=47.3

Q ss_pred             HHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccC---Ch-HHHHHHHHHhccCCcEEEEE
Q 024162           19 VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL---PG-DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        19 mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~---~~-~~~L~ei~RvLKPGG~l~i~   89 (271)
                      |.+.|++....  .....+|.+++++++.+.++ +.||+|++....+.+   .. +.++....|.|||||.++-.
T Consensus       117 ~~~~a~~~~~~--n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~  188 (376)
T 4hc4_A          117 IWQQAREVVRF--NGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPA  188 (376)
T ss_dssp             THHHHHHHHHH--TTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred             HHHHHHHHHHH--cCCCceEEEEeeeeeeecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCc
Confidence            45555554211  01235699999999999887 589999994432222   22 78888899999999998743

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=96.16  E-value=0.0014  Score=56.50  Aligned_cols=72  Identities=10%  Similarity=0.070  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC---CCC---CCceeEEEeccccccCC---------------h-HHHH
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL---PVE---SFSIDTVLSISSSHELP---------------G-DQLL   73 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l---p~~---~~sfD~V~s~~~l~~~~---------------~-~~~L   73 (271)
                      ++.|++.++++....  ....++.++++|+.+.   +++   +++||+|++...+++..               + ..++
T Consensus        98 s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~  175 (254)
T 2h00_A           98 DDMCFNYAKKNVEQN--NLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNT  175 (254)
T ss_dssp             CHHHHHHHHHHHHHT--TCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC------------------------
T ss_pred             CHHHHHHHHHHHHHc--CCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHh
Confidence            578888888774211  1123489999998762   455   36899999975444322               1 2456


Q ss_pred             HHHHHhccCCcEEEEE
Q 024162           74 EEISRVLKPGGTILIY   89 (271)
Q Consensus        74 ~ei~RvLKPGG~l~i~   89 (271)
                      .+++|+|||||.+.+.
T Consensus       176 ~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          176 GGITEIMAEGGELEFV  191 (254)
T ss_dssp             -CTTTTHHHHTHHHHH
T ss_pred             hhHHHHEecCCEEEEE
Confidence            7788888888877554

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=96.12  E-value=0.013  Score=48.29  Aligned_cols=61  Identities=7%  Similarity=-0.051  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~   89 (271)
                      ++.|++.++++..        ++.++++++..+|   ++||+|++...+|++..   ..+++++.++|  |+.+++.
T Consensus        83 ~~~~~~~a~~~~~--------~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~  146 (200)
T 1ne2_A           83 DPDAIETAKRNCG--------GVNFMVADVSEIS---GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIG  146 (200)
T ss_dssp             CHHHHHHHHHHCT--------TSEEEECCGGGCC---CCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEEE
T ss_pred             CHHHHHHHHHhcC--------CCEEEECcHHHCC---CCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEE
Confidence            6788888888751        5788999998875   68999999988888764   67999999999  5544443

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=96.07  E-value=0.0016  Score=63.63  Aligned_cols=75  Identities=15%  Similarity=0.125  Sum_probs=58.9

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC--CCCCCceeEEEeccccccCChH---HHHHHHHHhccCCcEEEEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLSISSSHELPGD---QLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l--p~~~~sfD~V~s~~~l~~~~~~---~~L~ei~RvLKPGG~l~i~   89 (271)
                      .++.+++.||.++..   ....+|.|.+++++++  ++.+++||+|+++.+++|+++.   ..+..+++.|.++|..++.
T Consensus        96 ~~~~~i~~a~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~  172 (569)
T 4azs_A           96 FQQENINVCRALAEE---NPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVIL  172 (569)
T ss_dssp             SCHHHHHHHHHHHHT---STTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred             CCHHHHHHHHHHHHh---cCCCceEEEECCHHHHhhhccCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeE
Confidence            478899999987521   2235799999999988  5778899999999999999863   3455688889999988877


Q ss_pred             ecC
Q 024162           90 KKL   92 (271)
Q Consensus        90 ~~~   92 (271)
                      ...
T Consensus       173 ~~~  175 (569)
T 4azs_A          173 ELA  175 (569)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            643

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=96.00  E-value=0.0055  Score=52.35  Aligned_cols=71  Identities=21%  Similarity=0.207  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CC--------------CCC--CceeEEEeccccccCCh-HHHHHHHH
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LP--------------VES--FSIDTVLSISSSHELPG-DQLLEEIS   77 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp--------------~~~--~sfD~V~s~~~l~~~~~-~~~L~ei~   77 (271)
                      ++.+++.++++....  ....++.++.+++.. ++              |++  ++||+|++...   ... ..++.++.
T Consensus        94 ~~~~~~~a~~~~~~~--g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~---~~~~~~~l~~~~  168 (239)
T 2hnk_A           94 SEEWTNVARKYWKEN--GLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDAD---KENYPNYYPLIL  168 (239)
T ss_dssp             CHHHHHHHHHHHHHT--TCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSC---GGGHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHc--CCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCC---HHHHHHHHHHHH
Confidence            567777777763211  111248888888754 22              233  78999998643   223 68899999


Q ss_pred             HhccCCcEEEEEec
Q 024162           78 RVLKPGGTILIYKK   91 (271)
Q Consensus        78 RvLKPGG~l~i~~~   91 (271)
                      ++|||||+|++.+.
T Consensus       169 ~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          169 KLLKPGGLLIADNV  182 (239)
T ss_dssp             HHEEEEEEEEEECS
T ss_pred             HHcCCCeEEEEEcc
Confidence            99999999999874

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=95.96  E-value=0.0078  Score=52.24  Aligned_cols=71  Identities=13%  Similarity=0.023  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-C-C-----CCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-P-V-----ESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p-~-----~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~   87 (271)
                      ++.|++.++++....  ....+|.++.+++... + +     ++++||+|++...   ... ..++.+++++|||||+|+
T Consensus       113 s~~~~~~a~~~~~~~--g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv  187 (247)
T 1sui_A          113 NKENYELGLPVIKKA--GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIG  187 (247)
T ss_dssp             CCHHHHHHHHHHHHT--TCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEE
T ss_pred             CHHHHHHHHHHHHHc--CCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEE
Confidence            457777787764211  1124688999988653 3 2     2678999998643   223 789999999999999999


Q ss_pred             EEec
Q 024162           88 IYKK   91 (271)
Q Consensus        88 i~~~   91 (271)
                      +.+.
T Consensus       188 ~d~~  191 (247)
T 1sui_A          188 YDNT  191 (247)
T ss_dssp             EECT
T ss_pred             EecC
Confidence            8764

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=95.82  E-value=0.0094  Score=50.15  Aligned_cols=72  Identities=15%  Similarity=0.178  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC--CCCC----CceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL--PVES----FSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l--p~~~----~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i   88 (271)
                      ++.|++.+++.....  ....++.++++++.+.  .+..    ++||+|++...   ... ..++.++.++|+|||.+++
T Consensus       103 ~~~~~~~a~~~~~~~--g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~  177 (229)
T 2avd_A          103 DAQPPELGRPLWRQA--EAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAV  177 (229)
T ss_dssp             CSHHHHHHHHHHHHT--TCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHC--CCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEE
Confidence            456677777653211  1124688998887543  1221    68999998543   222 7899999999999999999


Q ss_pred             EecC
Q 024162           89 YKKL   92 (271)
Q Consensus        89 ~~~~   92 (271)
                      .+..
T Consensus       178 ~~~~  181 (229)
T 2avd_A          178 LRVL  181 (229)
T ss_dssp             ECCS
T ss_pred             ECCC
Confidence            7643

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=95.79  E-value=0.0053  Score=52.83  Aligned_cols=71  Identities=14%  Similarity=0.047  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-C-C-----CCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-P-V-----ESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p-~-----~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~   87 (271)
                      ++.+++.+++.....  ....++.++++++.++ + +     +.++||+|++...   ... ..++.++.++|||||.++
T Consensus       104 ~~~~~~~a~~~~~~~--g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv  178 (237)
T 3c3y_A          104 DREAYEIGLPFIRKA--GVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD---KPNYIKYHERLMKLVKVGGIVA  178 (237)
T ss_dssp             CHHHHHHHHHHHHHT--TCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHc--CCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCc---hHHHHHHHHHHHHhcCCCeEEE
Confidence            567788888764211  1123588998987643 3 2     2578999998532   223 789999999999999999


Q ss_pred             EEec
Q 024162           88 IYKK   91 (271)
Q Consensus        88 i~~~   91 (271)
                      +.+.
T Consensus       179 ~d~~  182 (237)
T 3c3y_A          179 YDNT  182 (237)
T ss_dssp             EECT
T ss_pred             EecC
Confidence            8764

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=95.73  E-value=0.019  Score=54.93  Aligned_cols=82  Identities=17%  Similarity=0.127  Sum_probs=52.7

Q ss_pred             cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-CCCCceeEEEecc------ccc--------cCC
Q 024162            4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSIS------SSH--------ELP   68 (271)
Q Consensus         4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-~~~~sfD~V~s~~------~l~--------~~~   68 (271)
                      +.++..|.    ++.|++.+++.....   . ..+.++++|+..++ +.+++||+|++..      .+.        +-+
T Consensus       127 g~V~AvDi----s~~~l~~a~~n~~r~---G-~~v~~~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~  198 (464)
T 3m6w_A          127 GLLLANEV----DGKRVRGLLENVERW---G-APLAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGP  198 (464)
T ss_dssp             SEEEEECS----CHHHHHHHHHHHHHH---C-CCCEEECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCT
T ss_pred             CEEEEEEC----CHHHHHHHHHHHHHc---C-CeEEEEECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCH
Confidence            34555554    455666666653211   1 22788889988776 3567999999621      111        101


Q ss_pred             ---------hHHHHHHHHHhccCCcEEEEEecCC
Q 024162           69 ---------GDQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        69 ---------~~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                               ...+|.+++++|||||+|++++-.-
T Consensus       199 ~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          199 SAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             THHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence                     0568999999999999999987653

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=95.64  E-value=0.013  Score=55.97  Aligned_cols=83  Identities=12%  Similarity=0.051  Sum_probs=52.5

Q ss_pred             cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-CCCCceeEEEeccc---cccC-----------C
Q 024162            4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSISS---SHEL-----------P   68 (271)
Q Consensus         4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-~~~~sfD~V~s~~~---l~~~-----------~   68 (271)
                      +.++..|.+    +.+++.+++.....   ...++.++.+|+..++ +.+++||+|++...   ...+           .
T Consensus       131 g~V~AvDis----~~rl~~~~~n~~r~---g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~  203 (456)
T 3m4x_A          131 GLLVTNEIF----PKRAKILSENIERW---GVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTE  203 (456)
T ss_dssp             SEEEEECSS----HHHHHHHHHHHHHH---TCSSEEEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCT
T ss_pred             CEEEEEeCC----HHHHHHHHHHHHHc---CCCceEEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCH
Confidence            345556654    44555555543111   1135888888887765 34679999997321   1111           0


Q ss_pred             -------h--HHHHHHHHHhccCCcEEEEEecCC
Q 024162           69 -------G--DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        69 -------~--~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                             .  ..+|.+++++|||||+|++++-.-
T Consensus       204 ~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          204 ESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             THHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence                   0  278999999999999999988653

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=95.57  E-value=0.026  Score=50.08  Aligned_cols=72  Identities=14%  Similarity=0.156  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCce---eEEEeccccc-----------cCCh---------HHH
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSI---DTVLSISSSH-----------ELPG---------DQL   72 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sf---D~V~s~~~l~-----------~~~~---------~~~   72 (271)
                      ++.+++.+++.....  ....++.++++|+.. +++ ++|   |+|+++-...           |.+.         ..+
T Consensus       155 s~~al~~A~~n~~~~--~l~~~v~~~~~D~~~-~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~  230 (284)
T 1nv8_A          155 SSKAVEIARKNAERH--GVSDRFFVRKGEFLE-PFK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDF  230 (284)
T ss_dssp             CHHHHHHHHHHHHHT--TCTTSEEEEESSTTG-GGG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHH
T ss_pred             CHHHHHHHHHHHHHc--CCCCceEEEECcchh-hcc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHH
Confidence            577888888764211  111248999999976 233 479   9999963211           2221         278


Q ss_pred             HHHHH-HhccCCcEEEEEec
Q 024162           73 LEEIS-RVLKPGGTILIYKK   91 (271)
Q Consensus        73 L~ei~-RvLKPGG~l~i~~~   91 (271)
                      ++++. +.|+|||+|++...
T Consensus       231 ~~~i~~~~l~pgG~l~~e~~  250 (284)
T 1nv8_A          231 YREFFGRYDTSGKIVLMEIG  250 (284)
T ss_dssp             HHHHHHHCCCTTCEEEEECC
T ss_pred             HHHHHHhcCCCCCEEEEEEC
Confidence            99999 99999999998643

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=95.56  E-value=0.023  Score=52.46  Aligned_cols=75  Identities=12%  Similarity=0.045  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCC----CCCceeEEEecccccc---------CCh-HHHHHHHHHhcc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV----ESFSIDTVLSISSSHE---------LPG-DQLLEEISRVLK   81 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~----~~~sfD~V~s~~~l~~---------~~~-~~~L~ei~RvLK   81 (271)
                      ++.+++.+++.....   ...++.++++|+..+..    ...+||+|++......         ... ..++.++.++|+
T Consensus       240 s~~~~~~a~~n~~~n---~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk  316 (382)
T 1wxx_A          240 SAEALRRAEENARLN---GLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLK  316 (382)
T ss_dssp             CHHHHHHHHHHHHHT---TCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEE
T ss_pred             CHHHHHHHHHHHHHc---CCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcC
Confidence            567777777763211   11238899999876532    2578999998432211         122 678899999999


Q ss_pred             CCcEEEEEecCC
Q 024162           82 PGGTILIYKKLT   93 (271)
Q Consensus        82 PGG~l~i~~~~~   93 (271)
                      |||.|+++....
T Consensus       317 pgG~l~~~~~~~  328 (382)
T 1wxx_A          317 EGGILATASCSH  328 (382)
T ss_dssp             EEEEEEEEECCT
T ss_pred             CCCEEEEEECCC
Confidence            999999998764

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=95.55  E-value=0.0072  Score=53.31  Aligned_cols=72  Identities=17%  Similarity=0.251  Sum_probs=50.0

Q ss_pred             CCeEEEeccCCC-CCCCCC----ceeEEEe-ccccccCC---hHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHH
Q 024162           36 PQIITQASSLSQ-LPVESF----SIDTVLS-ISSSHELP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISAL  106 (271)
Q Consensus        36 ~~v~~~~~d~e~-lp~~~~----sfD~V~s-~~~l~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l  106 (271)
                      .++..+.+|+.+ ++.-+.    .||+|+. .++....+   ...+|.+++|+|||||+|+.....           ..+
T Consensus       150 ~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysaa-----------~~v  218 (257)
T 2qy6_A          150 VTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSA-----------GFV  218 (257)
T ss_dssp             EEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCCB-----------HHH
T ss_pred             eEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeCC-----------HHH
Confidence            457788899865 453322    7999997 33222122   378999999999999999854422           146


Q ss_pred             HHHHHHcCCcch
Q 024162          107 EGKLLLAGFLDA  118 (271)
Q Consensus       107 ~~~l~laGF~~v  118 (271)
                      ++.|..+||...
T Consensus       219 rr~L~~aGF~v~  230 (257)
T 2qy6_A          219 RRGLQEAGFTMQ  230 (257)
T ss_dssp             HHHHHHHTEEEE
T ss_pred             HHHHHHCCCEEE
Confidence            677888999854

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=95.48  E-value=0.044  Score=47.57  Aligned_cols=94  Identities=14%  Similarity=-0.022  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD   95 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~   95 (271)
                      ++.+++.|++.....  ....+|.+.++|+.+...+.+.||+|+.....-. .-..+|.+..+.|+++|+|+++...   
T Consensus        54 ~~~al~~A~~N~~~~--gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmGg~-lI~~IL~~~~~~l~~~~~lIlqp~~---  127 (230)
T 3lec_A           54 VNGPYQSALKNVSEH--GLTSKIDVRLANGLSAFEEADNIDTITICGMGGR-LIADILNNDIDKLQHVKTLVLQPNN---  127 (230)
T ss_dssp             SHHHHHHHHHHHHHT--TCTTTEEEEECSGGGGCCGGGCCCEEEEEEECHH-HHHHHHHHTGGGGTTCCEEEEEESS---
T ss_pred             CHHHHHHHHHHHHHc--CCCCcEEEEECchhhccccccccCEEEEeCCchH-HHHHHHHHHHHHhCcCCEEEEECCC---
Confidence            345555555542110  1124699999998877665557999876332110 0156788889999999999999854   


Q ss_pred             cccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           96 KGDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        96 ~~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                        .    ...+++.|..+||.-++..
T Consensus       128 --~----~~~lr~~L~~~Gf~i~~E~  147 (230)
T 3lec_A          128 --R----EDDLRKWLAANDFEIVAED  147 (230)
T ss_dssp             --C----HHHHHHHHHHTTEEEEEEE
T ss_pred             --C----hHHHHHHHHHCCCEEEEEE
Confidence              1    1267788999999876654

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=95.43  E-value=0.14  Score=42.02  Aligned_cols=86  Identities=9%  Similarity=-0.006  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.++++....    +.++.++++|+.+++   .+||+|++...+++...   ..+++++.++|  ||.++ ....
T Consensus        81 ~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~-~~~~  150 (207)
T 1wy7_A           81 DKEAVDVLIENLGEF----KGKFKVFIGDVSEFN---SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYS-IHLA  150 (207)
T ss_dssp             CHHHHHHHHHHTGGG----TTSEEEEESCGGGCC---CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEE-EEEC
T ss_pred             CHHHHHHHHHHHHHc----CCCEEEEECchHHcC---CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEE-EEeC
Confidence            678888888875321    137899999998875   48999999887776642   78899999999  55444 4321


Q ss_pred             CCCcccHHHHHHHHHHHHHHcCCcc
Q 024162           93 TSDKGDVDKAISALEGKLLLAGFLD  117 (271)
Q Consensus        93 ~~~~~e~~~~~~~l~~~l~laGF~~  117 (271)
                      .      ......+...+...||..
T Consensus       151 ~------~~~~~~~~~~l~~~g~~~  169 (207)
T 1wy7_A          151 K------PEVRRFIEKFSWEHGFVV  169 (207)
T ss_dssp             C------HHHHHHHHHHHHHTTEEE
T ss_pred             C------cCCHHHHHHHHHHCCCeE
Confidence            1      111224455667788754

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=95.41  E-value=0.044  Score=49.63  Aligned_cols=94  Identities=14%  Similarity=0.090  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-------------------HHHHHHH
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-------------------DQLLEEI   76 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-------------------~~~L~ei   76 (271)
                      ++.++++++.....    .+..+.+.++|... +.....||+|+++..+++++.                   ..++.++
T Consensus       168 ~~~~~~~a~~n~~~----~g~~~~i~~~D~l~-~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~  242 (344)
T 2f8l_A          168 DDLLISLALVGADL----QRQKMTLLHQDGLA-NLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQG  242 (344)
T ss_dssp             CHHHHHHHHHHHHH----HTCCCEEEESCTTS-CCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh----CCCCceEEECCCCC-ccccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHH
Confidence            45666666665311    11256778888755 344678999999876554432                   2589999


Q ss_pred             HHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcc
Q 024162           77 SRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  117 (271)
Q Consensus        77 ~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~  117 (271)
                      .+.|||||++++..+.. ....  ...+.+++.+...|++.
T Consensus       243 ~~~Lk~gG~~~~v~p~~-~~~~--~~~~~ir~~l~~~~~~~  280 (344)
T 2f8l_A          243 MRYTKPGGYLFFLVPDA-MFGT--SDFAKVDKFIKKNGHIE  280 (344)
T ss_dssp             HHTEEEEEEEEEEEEGG-GGGS--TTHHHHHHHHHHHEEEE
T ss_pred             HHHhCCCCEEEEEECch-hcCC--chHHHHHHHHHhCCeEE
Confidence            99999999999988542 1110  01135666677777754

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=95.34  E-value=0.07  Score=48.02  Aligned_cols=77  Identities=19%  Similarity=0.220  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhCch--hhhcCCCCeEEEeccCCCC-CCCCCceeEEEeccc-----cccCChHHHHHHHHHhccCCcEEE
Q 024162           16 VSAVLNAIRDLGDE--AVEQCDPQIITQASSLSQL-PVESFSIDTVLSISS-----SHELPGDQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        16 s~~mv~~ar~~~~~--~~~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~-----l~~~~~~~~L~ei~RvLKPGG~l~   87 (271)
                      .+.+++++|+....  .....++++..+.+|+... .-..++||+|+.=..     ...+-..++++.+.|+|+|||.++
T Consensus       116 D~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v  195 (294)
T 3o4f_A          116 DAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFV  195 (294)
T ss_dssp             CHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEE
T ss_pred             CHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEE
Confidence            46788888886421  1123457888888988643 455778999997321     122334789999999999999999


Q ss_pred             EEecC
Q 024162           88 IYKKL   92 (271)
Q Consensus        88 i~~~~   92 (271)
                      .+...
T Consensus       196 ~q~~s  200 (294)
T 3o4f_A          196 AQNGV  200 (294)
T ss_dssp             EEEEE
T ss_pred             EecCC
Confidence            88654

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=95.30  E-value=0.011  Score=52.37  Aligned_cols=69  Identities=13%  Similarity=0.136  Sum_probs=47.2

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh--HHHH--------------HHHH-
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG--DQLL--------------EEIS-   77 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~--~~~L--------------~ei~-   77 (271)
                      .++.|++.++++....  ....++.++++|+.+++++  +||+|+++..+++..+  ..++              +|++ 
T Consensus        58 ~~~~~~~~a~~~~~~~--~~~~~v~~~~~D~~~~~~~--~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~  133 (285)
T 1zq9_A           58 LDPRLVAELHKRVQGT--PVASKLQVLVGDVLKTDLP--FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFAL  133 (285)
T ss_dssp             SCHHHHHHHHHHHTTS--TTGGGEEEEESCTTTSCCC--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHH
T ss_pred             CCHHHHHHHHHHHHhc--CCCCceEEEEcceecccch--hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence            3678888888864211  0114689999999988776  7999999776665543  2333              3443 


Q ss_pred             -HhccCCcEEE
Q 024162           78 -RVLKPGGTIL   87 (271)
Q Consensus        78 -RvLKPGG~l~   87 (271)
                       ++|||||.++
T Consensus       134 r~vlkPGg~~y  144 (285)
T 1zq9_A          134 RLVAKPGDKLY  144 (285)
T ss_dssp             HHHCCTTCTTC
T ss_pred             HHhcCCCCccc
Confidence             7999999874

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=95.22  E-value=0.048  Score=50.45  Aligned_cols=76  Identities=12%  Similarity=0.088  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHhCchhhhcC-CCCeEEEeccCCCCCC----CCCceeEEEecccc---------ccCCh-HHHHHHHHHhc
Q 024162           16 VSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPV----ESFSIDTVLSISSS---------HELPG-DQLLEEISRVL   80 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~-~~~v~~~~~d~e~lp~----~~~sfD~V~s~~~l---------~~~~~-~~~L~ei~RvL   80 (271)
                      ++.+++.+++.....  .. ..++.++++|+.++..    ....||+|++....         ..... ..++.++.++|
T Consensus       252 s~~al~~a~~n~~~n--gl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~L  329 (396)
T 3c0k_A          252 SQEALDIARQNVELN--KLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLL  329 (396)
T ss_dssp             CHHHHHHHHHHHHHT--TCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTE
T ss_pred             CHHHHHHHHHHHHHc--CCCccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhc
Confidence            567777777653211  01 1168999999876521    14689999985321         11233 78899999999


Q ss_pred             cCCcEEEEEecCC
Q 024162           81 KPGGTILIYKKLT   93 (271)
Q Consensus        81 KPGG~l~i~~~~~   93 (271)
                      +|||.|+++....
T Consensus       330 kpgG~l~~~~~~~  342 (396)
T 3c0k_A          330 NEGGILLTFSCSG  342 (396)
T ss_dssp             EEEEEEEEEECCT
T ss_pred             CCCcEEEEEeCCC
Confidence            9999999988654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=95.10  E-value=0.013  Score=58.82  Aligned_cols=92  Identities=14%  Similarity=0.077  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CCCCCCceeEEEecccc-----------ccCCh-HHHHHHHHHhccC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPVESFSIDTVLSISSS-----------HELPG-DQLLEEISRVLKP   82 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~l-----------~~~~~-~~~L~ei~RvLKP   82 (271)
                      ++.|++.+++..... .....++.++++|+.+ ++...++||+|++....           ....+ ..++.++.++|+|
T Consensus       571 s~~al~~a~~N~~~n-gl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp  649 (703)
T 3v97_A          571 SRTYLEWAERNLRLN-GLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA  649 (703)
T ss_dssp             CHHHHHHHHHHHHHT-TCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEE
T ss_pred             CHHHHHHHHHHHHHc-CCCccceEEEecCHHHHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence            567778887763211 0111368999999876 45556899999984321           11223 6789999999999


Q ss_pred             CcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCc
Q 024162           83 GGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  116 (271)
Q Consensus        83 GG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~  116 (271)
                      ||+|+++........+        ...+...||.
T Consensus       650 gG~L~~s~~~~~~~~~--------~~~l~~~g~~  675 (703)
T 3v97_A          650 GGTIMFSNNKRGFRMD--------LDGLAKLGLK  675 (703)
T ss_dssp             EEEEEEEECCTTCCCC--------HHHHHHTTEE
T ss_pred             CcEEEEEECCcccccC--------HHHHHHcCCc
Confidence            9999988866332222        1235567776

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=95.10  E-value=0.042  Score=50.78  Aligned_cols=76  Identities=9%  Similarity=0.014  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCC----CCCceeEEEecccccc---------CCh-HHHHHHHHHhcc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV----ESFSIDTVLSISSSHE---------LPG-DQLLEEISRVLK   81 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~----~~~sfD~V~s~~~l~~---------~~~-~~~L~ei~RvLK   81 (271)
                      ++.+++.+++.....  ....++.++++|+.++..    ...+||+|++......         ... ..++.++.++|+
T Consensus       249 s~~~l~~a~~n~~~n--~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk  326 (396)
T 2as0_A          249 SPRAIETAKENAKLN--GVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVK  326 (396)
T ss_dssp             CHHHHHHHHHHHHHT--TCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEE
T ss_pred             CHHHHHHHHHHHHHc--CCCccceEEECCHHHHHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            566777777653211  011168999999876532    2578999998432211         122 678899999999


Q ss_pred             CCcEEEEEecCC
Q 024162           82 PGGTILIYKKLT   93 (271)
Q Consensus        82 PGG~l~i~~~~~   93 (271)
                      |||.|++.....
T Consensus       327 pgG~lv~~~~~~  338 (396)
T 2as0_A          327 DGGILVTCSCSQ  338 (396)
T ss_dssp             EEEEEEEEECCT
T ss_pred             CCcEEEEEECCC
Confidence            999999988764

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=95.03  E-value=0.036  Score=48.81  Aligned_cols=70  Identities=11%  Similarity=0.014  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh--HHHHHHHHHhccCCcEEEEEe
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG--DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~--~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ++.|++.+++....    .+.+..+.+.|....+++. +||+|+++-++|++.+  ...+-+++..|+++|.++-..
T Consensus       135 d~~~i~~ar~~~~~----~g~~~~~~v~D~~~~~~~~-~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          135 HQGLGDVITPFARE----KDWDFTFALQDVLCAPPAE-AGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             BHHHHHHHHHHHHH----TTCEEEEEECCTTTSCCCC-BCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred             CHHHHHHHHHHHHh----cCCCceEEEeecccCCCCC-CcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence            57788888887422    2367888999998887665 8999999988888865  334448999999998888776

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=94.95  E-value=0.043  Score=50.83  Aligned_cols=97  Identities=10%  Similarity=0.041  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCC-CeEEEeccCCC-CCC---CCCceeEEEecccc-----ccCCh-----HHHHHHHHHhc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDP-QIITQASSLSQ-LPV---ESFSIDTVLSISSS-----HELPG-----DQLLEEISRVL   80 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~-~v~~~~~d~e~-lp~---~~~sfD~V~s~~~l-----~~~~~-----~~~L~ei~RvL   80 (271)
                      ++.|++.|++.....  .... ++.++++|+.+ ++.   ...+||+|++....     .....     ..++.++.++|
T Consensus       244 s~~al~~A~~N~~~n--~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L  321 (385)
T 2b78_A          244 AKRSRALSLAHFEAN--HLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEIL  321 (385)
T ss_dssp             CTTHHHHHHHHHHHT--TCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTE
T ss_pred             CHHHHHHHHHHHHHc--CCCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhc
Confidence            455666666653111  0112 68999999865 331   24589999984322     12222     45778889999


Q ss_pred             cCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCc
Q 024162           81 KPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  116 (271)
Q Consensus        81 KPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~  116 (271)
                      +|||.|+++......  .....++.+...+..+|+.
T Consensus       322 ~pgG~l~~~~~~~~~--~~~~~~~~i~~~~~~~g~~  355 (385)
T 2b78_A          322 SENGLIIASTNAANM--TVSQFKKQIEKGFGKQKHT  355 (385)
T ss_dssp             EEEEEEEEEECCTTS--CHHHHHHHHHHHHTTCCCE
T ss_pred             CCCcEEEEEeCCCcC--CHHHHHHHHHHHHHHcCCc
Confidence            999999999866431  1222223344445555554

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=94.58  E-value=0.082  Score=47.91  Aligned_cols=70  Identities=11%  Similarity=0.186  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      ++.+++.+++.....  ....++.++++|+.++.   .+||+|++.....   ...++.++.++|+|||.|++.+...
T Consensus       225 s~~ai~~a~~n~~~n--~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~~---~~~~l~~~~~~L~~gG~l~~~~~~~  294 (336)
T 2yx1_A          225 NPHAIELLKKNIKLN--KLEHKIIPILSDVREVD---VKGNRVIMNLPKF---AHKFIDKALDIVEEGGVIHYYTIGK  294 (336)
T ss_dssp             CHHHHHHHHHHHHHT--TCTTTEEEEESCGGGCC---CCEEEEEECCTTT---GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred             CHHHHHHHHHHHHHc--CCCCcEEEEECChHHhc---CCCcEEEECCcHh---HHHHHHHHHHHcCCCCEEEEEEeec
Confidence            566777777653211  11136899999998776   7899999853211   1378899999999999999988764

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=94.50  E-value=0.13  Score=45.00  Aligned_cols=94  Identities=14%  Similarity=0.056  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD   95 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~   95 (271)
                      ++.+++.|++.....  ....+|.+.++|+.+...+...||+|++....-.+ -..+|.+..+.|+++|+|+++...   
T Consensus        54 ~~~al~~A~~N~~~~--gl~~~I~v~~gD~l~~~~~~~~~D~IviagmGg~l-I~~IL~~~~~~L~~~~~lIlq~~~---  127 (244)
T 3gnl_A           54 VDGPFQSAQKQVRSS--GLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGGTL-IRTILEEGAAKLAGVTKLILQPNI---  127 (244)
T ss_dssp             SHHHHHHHHHHHHHT--TCTTTEEEEECSGGGGCCGGGCCCEEEEEEECHHH-HHHHHHHTGGGGTTCCEEEEEESS---
T ss_pred             CHHHHHHHHHHHHHc--CCCceEEEEecchhhccCccccccEEEEeCCchHH-HHHHHHHHHHHhCCCCEEEEEcCC---
Confidence            345555565543110  11236899999987765554569998863221100 156788899999999999999754   


Q ss_pred             cccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           96 KGDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        96 ~~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                        ..    ..++..|..+||..++..
T Consensus       128 --~~----~~lr~~L~~~Gf~i~~E~  147 (244)
T 3gnl_A          128 --AA----WQLREWSEQNNWLITSEA  147 (244)
T ss_dssp             --CH----HHHHHHHHHHTEEEEEEE
T ss_pred             --Ch----HHHHHHHHHCCCEEEEEE
Confidence              11    267788999999875543

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=94.22  E-value=0.14  Score=45.53  Aligned_cols=76  Identities=9%  Similarity=0.055  Sum_probs=49.8

Q ss_pred             CCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCC
Q 024162           36 PQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF  115 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF  115 (271)
                      .++.+..+|+..++. .+.||.|++.....   ...+|....++|||||.++++........ .....+.+.+.+...||
T Consensus       175 ~~v~~~~~D~~~~~~-~~~~D~Vi~~~p~~---~~~~l~~a~~~lk~gG~ih~~~~~~e~~~-~~~~~e~i~~~~~~~g~  249 (278)
T 3k6r_A          175 DRMSAYNMDNRDFPG-ENIADRILMGYVVR---THEFIPKALSIAKDGAIIHYHNTVPEKLM-PREPFETFKRITKEYGY  249 (278)
T ss_dssp             TTEEEECSCTTTCCC-CSCEEEEEECCCSS---GGGGHHHHHHHEEEEEEEEEEEEEEGGGT-TTTTHHHHHHHHHHTTC
T ss_pred             CcEEEEeCcHHHhcc-ccCCCEEEECCCCc---HHHHHHHHHHHcCCCCEEEEEeeeccccc-chhHHHHHHHHHHHcCC
Confidence            458889999888753 57899998764211   25678889999999999988876432110 01112244555666777


Q ss_pred             c
Q 024162          116 L  116 (271)
Q Consensus       116 ~  116 (271)
                      .
T Consensus       250 ~  250 (278)
T 3k6r_A          250 D  250 (278)
T ss_dssp             E
T ss_pred             c
Confidence            5

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=94.08  E-value=0.17  Score=43.64  Aligned_cols=93  Identities=12%  Similarity=-0.009  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCC-CCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLS-QLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e-~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      ++.+++.|++.....  ....+|.+.++|+. .++.. ..||+|+....--.+ -..++.+..+.|+|+|+|+++...  
T Consensus        48 ~~~al~~A~~N~~~~--gl~~~i~~~~~d~l~~l~~~-~~~D~IviaG~Gg~~-i~~Il~~~~~~L~~~~~lVlq~~~--  121 (225)
T 3kr9_A           48 VEGPYQSAVKNVEAH--GLKEKIQVRLANGLAAFEET-DQVSVITIAGMGGRL-IARILEEGLGKLANVERLILQPNN--  121 (225)
T ss_dssp             SHHHHHHHHHHHHHT--TCTTTEEEEECSGGGGCCGG-GCCCEEEEEEECHHH-HHHHHHHTGGGCTTCCEEEEEESS--
T ss_pred             CHHHHHHHHHHHHHc--CCCceEEEEECchhhhcccC-cCCCEEEEcCCChHH-HHHHHHHHHHHhCCCCEEEEECCC--
Confidence            345555555542110  11236899999884 44432 269998864321100 167889999999999999997753  


Q ss_pred             CcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           95 DKGDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        95 ~~~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                         ..    ..++..|..+||..++..
T Consensus       122 ---~~----~~vr~~L~~~Gf~i~~e~  141 (225)
T 3kr9_A          122 ---RE----DDLRIWLQDHGFQIVAES  141 (225)
T ss_dssp             ---CH----HHHHHHHHHTTEEEEEEE
T ss_pred             ---CH----HHHHHHHHHCCCEEEEEE
Confidence               11    256778899999876653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=94.04  E-value=0.13  Score=47.85  Aligned_cols=74  Identities=11%  Similarity=-0.036  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-CCCCCceeEEEecccccc---------CCh-HHHHHHHHHhccCCc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-PVESFSIDTVLSISSSHE---------LPG-DQLLEEISRVLKPGG   84 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~l~~---------~~~-~~~L~ei~RvLKPGG   84 (271)
                      ++.|++.+++.....    +....+.++|+.++ +...+.||+|++......         ... ..++.++.++|||||
T Consensus       245 s~~al~~a~~n~~~n----g~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG  320 (393)
T 4dmg_A          245 DLEALGVLDQAALRL----GLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEG  320 (393)
T ss_dssp             CHHHHHHHHHHHHHH----TCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred             CHHHHHHHHHHHHHh----CCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            567777777763211    12234557887654 222334999998543211         112 578899999999999


Q ss_pred             EEEEEecCC
Q 024162           85 TILIYKKLT   93 (271)
Q Consensus        85 ~l~i~~~~~   93 (271)
                      +|++.+...
T Consensus       321 ~Lv~~s~s~  329 (393)
T 4dmg_A          321 FLWLSSCSY  329 (393)
T ss_dssp             EEEEEECCT
T ss_pred             EEEEEECCC
Confidence            999877654

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=93.87  E-value=0.23  Score=44.29  Aligned_cols=70  Identities=9%  Similarity=0.054  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .+.|++.+++....    .+....+.+.|...-+ +.+.||+|+++-++|++.+   ...+ +++..|+|+|.++-.+.
T Consensus       165 d~~~le~a~~~l~~----~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~  237 (281)
T 3lcv_B          165 DARLVGFVDEALTR----LNVPHRTNVADLLEDR-LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPT  237 (281)
T ss_dssp             BHHHHHHHHHHHHH----TTCCEEEEECCTTTSC-CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred             CHHHHHHHHHHHHh----cCCCceEEEeeecccC-CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence            57889999987522    2356777777775444 5678999999999999976   3566 89999999999988775

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.75  E-value=0.034  Score=49.53  Aligned_cols=55  Identities=22%  Similarity=0.319  Sum_probs=39.6

Q ss_pred             CeEEEeccCCC-CC-CCCCceeEEEeccccccC--------------------Ch-HHHHHHHHHhccCCcEEEEEec
Q 024162           37 QIITQASSLSQ-LP-VESFSIDTVLSISSSHEL--------------------PG-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        37 ~v~~~~~d~e~-lp-~~~~sfD~V~s~~~l~~~--------------------~~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .+.++++|..+ ++ +++++||+|++.-.+...                    .. ..++.+++|+|||||.|++...
T Consensus        21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            46788888865 33 568899999996433211                    11 3577899999999999988754

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=93.46  E-value=0.17  Score=46.52  Aligned_cols=77  Identities=19%  Similarity=0.127  Sum_probs=49.0

Q ss_pred             CeEEEeccCCCCCCCCCceeEEEeccccc---c-------CCh--------------------HHHHHHHHHhccCCcEE
Q 024162           37 QIITQASSLSQLPVESFSIDTVLSISSSH---E-------LPG--------------------DQLLEEISRVLKPGGTI   86 (271)
Q Consensus        37 ~v~~~~~d~e~lp~~~~sfD~V~s~~~l~---~-------~~~--------------------~~~L~ei~RvLKPGG~l   86 (271)
                      ++.++++|+...+. ...||+|+++-.+.   .       +..                    ..++..+.++|+|||++
T Consensus        82 ~~~~~~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~  160 (421)
T 2ih2_A           82 WAEGILADFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVL  160 (421)
T ss_dssp             TEEEEESCGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEE
T ss_pred             CCcEEeCChhhcCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEE
Confidence            57788888877643 46899999953221   1       211                    25689999999999999


Q ss_pred             EEEecCCCCcccHHHHHHHHHHHHHHcCCcc
Q 024162           87 LIYKKLTSDKGDVDKAISALEGKLLLAGFLD  117 (271)
Q Consensus        87 ~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~  117 (271)
                      ++..+..-.....   ...++..+...|+..
T Consensus       161 ~~i~p~~~l~~~~---~~~lr~~l~~~~~~~  188 (421)
T 2ih2_A          161 VFVVPATWLVLED---FALLREFLAREGKTS  188 (421)
T ss_dssp             EEEEEGGGGTCGG---GHHHHHHHHHHSEEE
T ss_pred             EEEEChHHhcCcc---HHHHHHHHHhcCCeE
Confidence            9887652100111   124556666667643

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=93.39  E-value=0.28  Score=45.96  Aligned_cols=71  Identities=14%  Similarity=0.109  Sum_probs=48.1

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCC----CCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ----LPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~----lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      .++.|++.|++.....   ...++.|+++++.+    +++.+++||+|++.-.....  ..+++.+. .++|++.++++.
T Consensus       316 ~s~~al~~A~~n~~~~---~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~--~~~~~~l~-~~~p~~ivyvsc  389 (433)
T 1uwv_A          316 GVPALVEKGQQNARLN---GLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA--AGVMQQII-KLEPIRIVYVSC  389 (433)
T ss_dssp             SCHHHHHHHHHHHHHT---TCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC--HHHHHHHH-HHCCSEEEEEES
T ss_pred             CCHHHHHHHHHHHHHc---CCCceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccH--HHHHHHHH-hcCCCeEEEEEC
Confidence            3677888888764211   11368999999987    45677899999986443322  34555554 479999988875


Q ss_pred             c
Q 024162           91 K   91 (271)
Q Consensus        91 ~   91 (271)
                      .
T Consensus       390 ~  390 (433)
T 1uwv_A          390 N  390 (433)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=93.24  E-value=0.22  Score=44.33  Aligned_cols=56  Identities=20%  Similarity=0.196  Sum_probs=42.0

Q ss_pred             CeEEEeccCCCCCCCCCceeEEEeccccc----cCCh---HHHHHHHHHhccCC-cEEEEEecC
Q 024162           37 QIITQASSLSQLPVESFSIDTVLSISSSH----ELPG---DQLLEEISRVLKPG-GTILIYKKL   92 (271)
Q Consensus        37 ~v~~~~~d~e~lp~~~~sfD~V~s~~~l~----~~~~---~~~L~ei~RvLKPG-G~l~i~~~~   92 (271)
                      ++.+.+.+++...++.+.||+|++-.+.+    +...   -.+|..+.++|||| |.|++..+.
T Consensus       123 ~ii~~~~~~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          123 NIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             GGEEEECSCCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             CeEEEeccceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            45666777777778889999999966544    2222   13568889999999 999998876

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=92.63  E-value=0.14  Score=46.34  Aligned_cols=72  Identities=21%  Similarity=0.250  Sum_probs=51.1

Q ss_pred             CCeEEEeccCC-CCC-CCCCceeEEEe-ccccccCCh---HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHH
Q 024162           36 PQIITQASSLS-QLP-VESFSIDTVLS-ISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGK  109 (271)
Q Consensus        36 ~~v~~~~~d~e-~lp-~~~~sfD~V~s-~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~  109 (271)
                      ..+.+..+|+. .++ ++...||+|+. .++...-+.   .+++++|+|.++|||+|......           ..+++.
T Consensus       166 v~L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYtaa-----------g~VRR~  234 (308)
T 3vyw_A          166 LSLKVLLGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYSSS-----------LSVRKS  234 (308)
T ss_dssp             EEEEEEESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCCC-----------HHHHHH
T ss_pred             EEEEEEechHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEeCc-----------HHHHHH
Confidence            34556778875 344 44568999997 333333333   88999999999999999855433           267788


Q ss_pred             HHHcCCcch
Q 024162          110 LLLAGFLDA  118 (271)
Q Consensus       110 l~laGF~~v  118 (271)
                      |..+||...
T Consensus       235 L~~aGF~V~  243 (308)
T 3vyw_A          235 LLTLGFKVG  243 (308)
T ss_dssp             HHHTTCEEE
T ss_pred             HHHCCCEEE
Confidence            999999853

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=92.59  E-value=0.37  Score=44.71  Aligned_cols=74  Identities=15%  Similarity=0.158  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccccc-CC---h-HHHHHHHHHhccC--CcEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE-LP---G-DQLLEEISRVLKP--GGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~-~~---~-~~~L~ei~RvLKP--GG~l~i   88 (271)
                      ++.|++.+++.....  .....+.+.++|+.+++.+. +||+|+++-.+.. +.   . ..+++++.++||+  ||++++
T Consensus       265 d~~al~~Ar~Na~~~--gl~~~I~~~~~D~~~l~~~~-~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i  341 (384)
T 3ldg_A          265 DGRMVEIARKNAREV--GLEDVVKLKQMRLQDFKTNK-INGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFI  341 (384)
T ss_dssp             CHHHHHHHHHHHHHT--TCTTTEEEEECCGGGCCCCC-CSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             CHHHHHHHHHHHHHc--CCCCceEEEECChHHCCccC-CcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence            578888888764221  11235899999999988754 8999999865432 22   2 5677778888887  999999


Q ss_pred             EecC
Q 024162           89 YKKL   92 (271)
Q Consensus        89 ~~~~   92 (271)
                      .+..
T Consensus       342 it~~  345 (384)
T 3ldg_A          342 LTND  345 (384)
T ss_dssp             EESC
T ss_pred             EECC
Confidence            8865

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=92.50  E-value=0.2  Score=47.04  Aligned_cols=74  Identities=12%  Similarity=0.050  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHhCc-hhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh------------------HHHHHHH
Q 024162           16 VSAVLNAIRDLGD-EAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG------------------DQLLEEI   76 (271)
Q Consensus        16 s~~mv~~ar~~~~-~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~------------------~~~L~ei   76 (271)
                      .+.++++++.... .+.  ....+.+.++|....+.. ..||+|+++-.+.....                  ..+++++
T Consensus       217 ~~~~~~lA~~nl~l~g~--~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~  293 (445)
T 2okc_A          217 TPLVVTLASMNLYLHGI--GTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHM  293 (445)
T ss_dssp             CHHHHHHHHHHHHHTTC--CSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCC--CcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHH
Confidence            3566666665421 111  001345677887766554 38999999755432211                  3789999


Q ss_pred             HHhccCCcEEEEEecC
Q 024162           77 SRVLKPGGTILIYKKL   92 (271)
Q Consensus        77 ~RvLKPGG~l~i~~~~   92 (271)
                      ++.|||||++.+..+.
T Consensus       294 ~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          294 MLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             HHHEEEEEEEEEEEEH
T ss_pred             HHHhccCCEEEEEECC
Confidence            9999999999888753

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=92.20  E-value=0.32  Score=45.23  Aligned_cols=74  Identities=16%  Similarity=0.153  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccccc-CCh----HHHHHHHHHhccC--CcEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE-LPG----DQLLEEISRVLKP--GGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~-~~~----~~~L~ei~RvLKP--GG~l~i   88 (271)
                      ++.|++.|++.....  .....|.++++|+.+++.+ .+||+|+++-.+.. +.+    ..+++++.++||+  ||.+++
T Consensus       272 d~~al~~Ar~Na~~~--gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i  348 (393)
T 3k0b_A          272 DARLIEIAKQNAVEA--GLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYV  348 (393)
T ss_dssp             CHHHHHHHHHHHHHT--TCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred             CHHHHHHHHHHHHHc--CCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEE
Confidence            678888888764221  1123589999999998875 48999999855432 221    4567777777876  999999


Q ss_pred             EecC
Q 024162           89 YKKL   92 (271)
Q Consensus        89 ~~~~   92 (271)
                      .+..
T Consensus       349 it~~  352 (393)
T 3k0b_A          349 LTSY  352 (393)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            8865

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=91.29  E-value=0.48  Score=44.43  Aligned_cols=68  Identities=16%  Similarity=0.173  Sum_probs=46.2

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      .++.|++.+++.....    +..+.|+++|+.++...  +||+|++......+ ...+++.+. .|+|||.++++.
T Consensus       320 ~s~~ai~~A~~n~~~n----gl~v~~~~~d~~~~~~~--~fD~Vv~dPPr~g~-~~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          320 SNEFAIEMARRNVEIN----NVDAEFEVASDREVSVK--GFDTVIVDPPRAGL-HPRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             SCHHHHHHHHHHHHHH----TCCEEEEECCTTTCCCT--TCSEEEECCCTTCS-CHHHHHHHH-HHCCSEEEEEES
T ss_pred             CCHHHHHHHHHHHHHc----CCcEEEEECChHHcCcc--CCCEEEEcCCccch-HHHHHHHHH-hcCCCcEEEEEC
Confidence            3678888888764211    12289999999887533  89999986442212 145666554 599999999985

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=91.03  E-value=0.23  Score=44.12  Aligned_cols=48  Identities=4%  Similarity=-0.114  Sum_probs=30.4

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   67 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~   67 (271)
                      .++.|++.++++...   ....++.++.+|+..++++  +||+|+++...++.
T Consensus        72 i~~~~~~~a~~~~~~---~~~~~v~~~~~D~~~~~~~--~~D~Vv~n~py~~~  119 (299)
T 2h1r_A           72 IDSRMISEVKKRCLY---EGYNNLEVYEGDAIKTVFP--KFDVCTANIPYKIS  119 (299)
T ss_dssp             SCHHHHHHHHHHHHH---TTCCCEEC----CCSSCCC--CCSEEEEECCGGGH
T ss_pred             CCHHHHHHHHHHHHH---cCCCceEEEECchhhCCcc--cCCEEEEcCCcccc
Confidence            367888888876421   1124688999999888764  89999997665543

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=90.90  E-value=0.46  Score=43.96  Aligned_cols=74  Identities=15%  Similarity=0.171  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccccc-CC---h-HHHHHHHHHhccC--CcEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE-LP---G-DQLLEEISRVLKP--GGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~-~~---~-~~~L~ei~RvLKP--GG~l~i   88 (271)
                      ++.|++.|++.....  .....|.+.++|+.+++.+ .+||+|+++-.+.. +.   . ..+++++.++||+  ||.+++
T Consensus       266 d~~ai~~Ar~Na~~~--gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i  342 (385)
T 3ldu_A          266 DEESIDIARENAEIA--GVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYL  342 (385)
T ss_dssp             CHHHHHHHHHHHHHH--TCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEE
T ss_pred             CHHHHHHHHHHHHHc--CCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence            678888888864221  1112689999999998765 48999999765432 22   1 5677778888887  999998


Q ss_pred             EecC
Q 024162           89 YKKL   92 (271)
Q Consensus        89 ~~~~   92 (271)
                      .+..
T Consensus       343 it~~  346 (385)
T 3ldu_A          343 ITSY  346 (385)
T ss_dssp             EESC
T ss_pred             EECC
Confidence            8765

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=90.26  E-value=0.3  Score=44.03  Aligned_cols=56  Identities=14%  Similarity=0.065  Sum_probs=39.9

Q ss_pred             CeEEEeccCCC-CC-CCCCceeEEEecccccc--------------CCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           37 QIITQASSLSQ-LP-VESFSIDTVLSISSSHE--------------LPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        37 ~v~~~~~d~e~-lp-~~~~sfD~V~s~~~l~~--------------~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ....+++|... +. +++++||+|++.-....              +.. ...|.+++|+|||||.+++....
T Consensus        14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d   86 (323)
T 1boo_A           14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG   86 (323)
T ss_dssp             SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence            45667787653 43 66889999998533211              112 67899999999999999987543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=87.51  E-value=1.3  Score=43.87  Aligned_cols=53  Identities=15%  Similarity=0.144  Sum_probs=40.0

Q ss_pred             CCCCeEEEeccCCCCCCCCCceeEEEeccccccCC---hHHHHHHHHHhccCCcEEE
Q 024162           34 CDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        34 ~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~---~~~~L~ei~RvLKPGG~l~   87 (271)
                      .+.+|+.++++++++.++ +.+|+|+|-..-..+.   ..+.|...-|.|||||.++
T Consensus       409 ~~dkVtVI~gd~eev~LP-EKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          409 WGSQVTVVSSDMREWVAP-EKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             TGGGEEEEESCTTTCCCS-SCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             CCCeEEEEeCcceeccCC-cccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            346799999999998876 5899999944322221   1567778889999999985

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=87.00  E-value=2.5  Score=38.78  Aligned_cols=91  Identities=16%  Similarity=0.092  Sum_probs=57.6

Q ss_pred             CccEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-CCCCceeEEEe--cccc------------cc
Q 024162            2 QSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLS--ISSS------------HE   66 (271)
Q Consensus         2 ~~~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-~~~~sfD~V~s--~~~l------------~~   66 (271)
                      ..+-|++.|.+..=...+.+.++....... ....++.....|...++ +..+.||.|+.  -++-            .|
T Consensus       171 ~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~-~~~~~v~v~~~D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~  249 (359)
T 4fzv_A          171 CCRNLAANDLSPSRIARLQKILHSYVPEEI-RDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFK  249 (359)
T ss_dssp             CEEEEEEECSCHHHHHHHHHHHHHHSCTTT-TTSSSEEEECCCGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTS
T ss_pred             CCCcEEEEcCCHHHHHHHHHHHHHhhhhhh-ccCCceEEEeCchhhcchhccccCCEEEECCccCCCCCcccccChhhhh
Confidence            344577777776666677666666532111 12246777777777664 45678999996  1110            01


Q ss_pred             -CC--------h--HHHHHHHHHhccCCcEEEEEecCC
Q 024162           67 -LP--------G--DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        67 -~~--------~--~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                       +.        .  .++|....+.|||||+|+.++=+-
T Consensus       250 ~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          250 RSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             GGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence             11        1  357788899999999999998654

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=86.71  E-value=1.7  Score=38.92  Aligned_cols=82  Identities=5%  Similarity=-0.095  Sum_probs=47.3

Q ss_pred             cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCC---CceeEEEecc------ccc------cC-
Q 024162            4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVES---FSIDTVLSIS------SSH------EL-   67 (271)
Q Consensus         4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~---~sfD~V~s~~------~l~------~~-   67 (271)
                      +.++..|..    +.+++.+++....   ....++.++++|+..++...   .+||+|++-.      .+.      |. 
T Consensus       128 g~V~a~D~~----~~~l~~~~~n~~r---~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~  200 (309)
T 2b9e_A          128 GKIFAFDLD----AKRLASMATLLAR---AGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAG  200 (309)
T ss_dssp             SEEEEEESC----HHHHHHHHHHHHH---TTCCSEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC--------------
T ss_pred             CEEEEEeCC----HHHHHHHHHHHHH---cCCCeEEEEeCChHhcCccccccCCCCEEEEcCCcCCCCCCccCCChhhhc
Confidence            345555553    4555555554311   01146889999988776432   5799999721      111      10 


Q ss_pred             --C--h--------HHHHHHHHHhccCCcEEEEEecCC
Q 024162           68 --P--G--------DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        68 --~--~--------~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                        .  +        ..+|...++.|+ ||+|++++-.-
T Consensus       201 ~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~  237 (309)
T 2b9e_A          201 TPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL  237 (309)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence              0  1        246777778887 99999887553

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=85.98  E-value=0.18  Score=43.25  Aligned_cols=54  Identities=13%  Similarity=0.066  Sum_probs=35.5

Q ss_pred             CCeEEEeccCCCCCCCC-CceeEEEeccccccC-----------Ch-HHHH----HHHHHhccCCcEEEEEe
Q 024162           36 PQIITQASSLSQLPVES-FSIDTVLSISSSHEL-----------PG-DQLL----EEISRVLKPGGTILIYK   90 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~~-~sfD~V~s~~~l~~~-----------~~-~~~L----~ei~RvLKPGG~l~i~~   90 (271)
                      .++.++++|+.+++++. ++| .|+++..++..           .. ..++    ..+.|+|+|||+|++..
T Consensus        75 ~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           75 TRVTLIHQDILQFQFPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             SEEEECCSCCTTTTCCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             CceEEEECChhhcCcccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            46889999999999874 689 66665432221           11 2233    55788888888776654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=84.43  E-value=0.95  Score=43.78  Aligned_cols=55  Identities=11%  Similarity=-0.007  Sum_probs=38.9

Q ss_pred             eEEEeccCCCCC-CCCCceeEEEeccccccCC---------------hHHHHHHHHHhccCCcEEEEEecC
Q 024162           38 IITQASSLSQLP-VESFSIDTVLSISSSHELP---------------GDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        38 v~~~~~d~e~lp-~~~~sfD~V~s~~~l~~~~---------------~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      +.+.++|....+ .....||+|+++-.+....               .-.++..+.+.|||||++.+..+.
T Consensus       244 ~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~  314 (541)
T 2ar0_A          244 GAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD  314 (541)
T ss_dssp             BSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             CCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence            455667765443 4467899999975432211               147999999999999999888754

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=83.68  E-value=1  Score=38.62  Aligned_cols=57  Identities=5%  Similarity=-0.021  Sum_probs=36.0

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCC-CceeEEEeccccccCChHHHHHHHHHh
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVES-FSIDTVLSISSSHELPGDQLLEEISRV   79 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~-~sfD~V~s~~~l~~~~~~~~L~ei~Rv   79 (271)
                      .++.|++.++++...     ..++.++++|+.++++++ ..| .|+++..+++  ....+..+.+.
T Consensus        60 ~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~~~~~~~~-~vv~nlPy~~--~~~~l~~~l~~  117 (244)
T 1qam_A           60 IDHKLCKTTENKLVD-----HDNFQVLNKDILQFKFPKNQSY-KIFGNIPYNI--STDIIRKIVFD  117 (244)
T ss_dssp             SCHHHHHHHHHHTTT-----CCSEEEECCCGGGCCCCSSCCC-EEEEECCGGG--HHHHHHHHHHS
T ss_pred             CCHHHHHHHHHhhcc-----CCCeEEEEChHHhCCcccCCCe-EEEEeCCccc--CHHHHHHHHhc
Confidence            367888888887521     257899999999999874 456 4555544332  23344444443

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=83.38  E-value=1.1  Score=44.89  Aligned_cols=54  Identities=17%  Similarity=0.126  Sum_probs=41.4

Q ss_pred             CCCCeEEEeccCCCCCCC-----CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEE
Q 024162           34 CDPQIITQASSLSQLPVE-----SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        34 ~~~~v~~~~~d~e~lp~~-----~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~   87 (271)
                      ...+|+.++++++++.++     .+.+|+|+|-..-....+   .+.|..+.|.|||||.++
T Consensus       470 ~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          470 WKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             TTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             CCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence            345689999999998774     678999999554332222   578888899999999875

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=82.90  E-value=2.4  Score=42.35  Aligned_cols=75  Identities=21%  Similarity=0.162  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC--CCCCCceeEEEecccccc-CC---h-HHHHH---HHHHhccCCcE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLSISSSHE-LP---G-DQLLE---EISRVLKPGGT   85 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l--p~~~~sfD~V~s~~~l~~-~~---~-~~~L~---ei~RvLKPGG~   85 (271)
                      .+.|++.|+......  .....|.+.++|+.++  |...++||+|+++-.+.. +.   . ..+++   ++.+.+.|||+
T Consensus       265 d~~av~~A~~N~~~a--gv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~  342 (703)
T 3v97_A          265 DARVIQRARTNARLA--GIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWN  342 (703)
T ss_dssp             CHHHHHHHHHHHHHT--TCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCE
T ss_pred             CHHHHHHHHHHHHHc--CCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCe
Confidence            567888888764211  1112489999999887  444458999999855432 11   1 33444   44555568999


Q ss_pred             EEEEecC
Q 024162           86 ILIYKKL   92 (271)
Q Consensus        86 l~i~~~~   92 (271)
                      +++.+..
T Consensus       343 ~~ilt~~  349 (703)
T 3v97_A          343 LSLFSAS  349 (703)
T ss_dssp             EEEEESC
T ss_pred             EEEEeCC
Confidence            9998653

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=82.52  E-value=4.3  Score=34.19  Aligned_cols=69  Identities=10%  Similarity=-0.070  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHhCchhhhcC--CCCeEEEeccCCCC---------------C--------C-CCCceeEEEeccccccCCh
Q 024162           16 VSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL---------------P--------V-ESFSIDTVLSISSSHELPG   69 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~--~~~v~~~~~d~e~l---------------p--------~-~~~sfD~V~s~~~l~~~~~   69 (271)
                      .+.+.+.+|+.....  ..  ..+|.++.+++...               +        + ..+.||+|+.=...    .
T Consensus        60 d~~~~~~ar~~l~~~--g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k----~  133 (202)
T 3cvo_A           60 DRAWARMMKAWLAAN--PPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF----R  133 (202)
T ss_dssp             CHHHHHHHHHHHHHS--CCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS----H
T ss_pred             CHHHHHHHHHHHHHc--CCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC----c
Confidence            456677777653211  11  24688888886542               2        2 23689999985421    1


Q ss_pred             HHHHHHHHHhccCCcEEEEEe
Q 024162           70 DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        70 ~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ...+..+.+.|+|||++++-+
T Consensus       134 ~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A          134 VGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             HHHHHHHHHHCSSCEEEEETT
T ss_pred             hhHHHHHHHhcCCCeEEEEeC
Confidence            355666779999999996544

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=81.65  E-value=0.61  Score=53.07  Aligned_cols=42  Identities=17%  Similarity=0.152  Sum_probs=16.2

Q ss_pred             CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 024162           50 VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        50 ~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      +..++||+|++.+++|-..+ ...|.+++++|||||+|++.+.
T Consensus      1307 ~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1307 GSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             -----CCEEEEECC--------------------CCEEEEEEC
T ss_pred             CCCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            34678999999998887766 7899999999999999998764

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=81.37  E-value=1.3  Score=38.24  Aligned_cols=60  Identities=13%  Similarity=0.163  Sum_probs=37.0

Q ss_pred             CCCCceeEEEeccccccC--------------Ch-HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcC
Q 024162           50 VESFSIDTVLSISSSHEL--------------PG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG  114 (271)
Q Consensus        50 ~~~~sfD~V~s~~~l~~~--------------~~-~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laG  114 (271)
                      +++++||+|++--....-              .- ..+|.+++|+|+|||.+++....      ..  ...+...+...|
T Consensus        19 l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d------~~--~~~~~~~~~~~g   90 (260)
T 1g60_A           19 VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP------FN--CAFICQYLVSKG   90 (260)
T ss_dssp             SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH------HH--HHHHHHHHHHTT
T ss_pred             ccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCc------HH--HHHHHHHHHhhc
Confidence            456789999883322111              11 56888999999999999887411      11  113334566678


Q ss_pred             Ccc
Q 024162          115 FLD  117 (271)
Q Consensus       115 F~~  117 (271)
                      |.-
T Consensus        91 f~~   93 (260)
T 1g60_A           91 MIF   93 (260)
T ss_dssp             CEE
T ss_pred             cce
Confidence            853

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=80.44  E-value=1.4  Score=40.52  Aligned_cols=50  Identities=12%  Similarity=0.024  Sum_probs=36.7

Q ss_pred             eEEEeccCCCCCC-CCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162           38 IITQASSLSQLPV-ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        38 v~~~~~d~e~lp~-~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      +.++++|+..+.. ....||+|+.-- .  .....++..+.+.|||||.|+++.
T Consensus       114 i~v~~~Da~~~~~~~~~~fD~I~lDP-~--~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          114 IVINHDDANRLMAERHRYFHFIDLDP-F--GSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             EEEEESCHHHHHHHSTTCEEEEEECC-S--SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEcCcHHHHHHhccCCCCEEEeCC-C--CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            8888998866532 145799999532 1  112688999999999999888864

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=80.05  E-value=2.4  Score=39.36  Aligned_cols=50  Identities=14%  Similarity=0.057  Sum_probs=36.4

Q ss_pred             eEEEeccCCCCC--CCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162           38 IITQASSLSQLP--VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        38 v~~~~~d~e~lp--~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      +.++.+|+..+-  .....||+|+.--   +-....++..+.+.|+|||.|+++.
T Consensus       107 v~v~~~Da~~~l~~~~~~~fD~V~lDP---~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          107 YEIHGMEANFFLRKEWGFGFDYVDLDP---FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEEECSCHHHHHHSCCSSCEEEEEECC---SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEeCCHHHHHHHhhCCCCcEEEECC---CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            788888875431  1245799999854   1112578999999999999888875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	271
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	2e-04
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	3e-04
d1ve3a1	226	c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A	0.002

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 3   SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS 62
           S    L E K          +R    + V   D   + Q   L          D ++S  
Sbjct: 110 SQHACLIEGKGECWQDKERQLRARV-KRVLPID---VHQPQPLGAGSPAPLPADALVSAF 165

Query: 63  SSHELPGD-----QLLEEISRVLKPGGTILIYKKLTSDKGDVD 100
               +  D     + L+ I+ +L+PGG +L+   L        
Sbjct: 166 CLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG 208

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 11/109 (10%)

Query: 53  FSIDTVLSISSSHELPGDQL---LEEISRVLKPGGTILIYKKLTSDKGDV----DKAISA 105
              D +LS      L    +   +  + R  KPGG  LI   + +           A   
Sbjct: 94  GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKE 153

Query: 106 LEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKA 154
            E +    G+     +   +    E+      G +   +  +  A K A
Sbjct: 154 GELRRYYEGW----DMLKYNEDVGELHRTDENGNRIKLRFATMLARKTA 198

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 47  QLPVESFSIDTVLSISSSHELPGD---QLLEEISRVLKPGGTILIY 89
           +L  E  + D V+ I S          Q+ +E+ RVLKP G  ++Y
Sbjct: 95  KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	271
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.27
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.15
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.08
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.98
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.95
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.94
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.94
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.78
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.77
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.77
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.77
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.68
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.61
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.57
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.55
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.45
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.42
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.42
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.4
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.35
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.3
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.29
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.17
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.12
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.12
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.12
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.1
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.0
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	97.96
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.94
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.91
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.82
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.81
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	97.8
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.78
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.76
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.76
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.73
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.63
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.45
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.44
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.43
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.41
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	97.4
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.31
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.24
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.13
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.07
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.07
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	96.77
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	96.37
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	96.36
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	96.19
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	95.88
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	95.13
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	95.1
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	95.05
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	94.92
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	94.56
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	94.53
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	94.14
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	94.02
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	93.34
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	93.32
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	93.22
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	92.88
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	92.81
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	92.65
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	91.95
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	88.57
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	88.3
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	88.27
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	87.32
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	87.11
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	85.93
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	85.13
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	82.66
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	81.39
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	80.65

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.27  E-value=5.9e-12  Score=106.23  Aligned_cols=76  Identities=21%  Similarity=0.329  Sum_probs=65.2

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .++.|++.||++...   ....++.|++++++++|+++++||+|++..++||+++ ..+|++++|+|||||+|++.++..
T Consensus        45 ~s~~~i~~A~~~~~~---~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  121 (231)
T d1vl5a_          45 LTEDILKVARAFIEG---NGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA  121 (231)
T ss_dssp             SCHHHHHHHHHHHHH---TTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             CCHHHHhhhhhcccc---cccccccccccccccccccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            478999999887521   2346799999999999999999999999999999987 899999999999999999987653

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.15  E-value=5e-11  Score=101.36  Aligned_cols=76  Identities=18%  Similarity=0.323  Sum_probs=66.4

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      +|+.|++.|+++...   ....++.+++++++++||++++||+|++..+++|+++ ..+|++++|+|||||++++.++..
T Consensus        46 ~S~~~l~~A~~~~~~---~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~  122 (234)
T d1xxla_          46 ATKEMVEVASSFAQE---KGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  122 (234)
T ss_dssp             SCHHHHHHHHHHHHH---HTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             CChhhhhhhhhhhcc---cccccccccccccccccccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence            588999999988532   1225699999999999999999999999999999987 999999999999999999988764

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.08  E-value=2.2e-10  Score=95.24  Aligned_cols=96  Identities=20%  Similarity=0.252  Sum_probs=75.4

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      +++.|++.++++.          +.+++++++++|+++++||+|++..+++|+++ ..+|++++|+|||||++++.++..
T Consensus        62 ~s~~~~~~a~~~~----------~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~  131 (208)
T d1vlma_          62 PSERMAEIARKRG----------VFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR  131 (208)
T ss_dssp             SCHHHHHHHHHTT----------CEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             CChhhcccccccc----------cccccccccccccccccccccccccccccccccccchhhhhhcCCCCceEEEEecCC
Confidence            4788999988753          57899999999999999999999999999987 889999999999999999998754


Q ss_pred             CCccc------------HH----HHHHHHHHHHHHcCCcchhh
Q 024162           94 SDKGD------------VD----KAISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        94 ~~~~e------------~~----~~~~~l~~~l~laGF~~v~~  120 (271)
                      .+...            ..    -....+...+..+||.+++.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v  174 (208)
T d1vlma_         132 ESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV  174 (208)
T ss_dssp             SSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             cchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEE
Confidence            31100            00    01235667788899976643

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.3e-10  Score=96.61  Aligned_cols=104  Identities=15%  Similarity=0.139  Sum_probs=79.6

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .|+.|++.||++...   ....++.|++++++++++++++||+|++..++||+++   ..++++++|+|||||.|++.++
T Consensus        91 ~s~~~l~~ak~~~~~---~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~  167 (222)
T d2ex4a1          91 ITEDFLVQAKTYLGE---EGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN  167 (222)
T ss_dssp             SCHHHHHHHHHHTGG---GGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCHHHhhcccccccc---ccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence            578999999998532   1224678999999999999999999999999999986   4799999999999999999976


Q ss_pred             CCCCc-------ccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           92 LTSDK-------GDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        92 ~~~~~-------~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                      .....       .........+...+..+||..++..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~  204 (222)
T d2ex4a1         168 MAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE  204 (222)
T ss_dssp             EBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred             ccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence            43211       0000123366777889999876543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.95  E-value=5.9e-10  Score=97.33  Aligned_cols=76  Identities=22%  Similarity=0.295  Sum_probs=65.3

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.|++.++++....  ....++.+++++++++|+++++||+|++..+++|+++ ..+|++++|+|||||+|++.++.
T Consensus        98 ~s~~~i~~a~~~~~~~--gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~  174 (282)
T d2o57a1          98 IAPVQNKRNEEYNNQA--GLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM  174 (282)
T ss_dssp             SCHHHHHHHHHHHHHH--TCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ccchhhhhhhcccccc--cccccccccccccccccccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEee
Confidence            4788899888875321  1234789999999999999999999999999999987 89999999999999999998864

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.94  E-value=4.6e-10  Score=97.34  Aligned_cols=102  Identities=12%  Similarity=0.120  Sum_probs=78.4

Q ss_pred             ccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162           14 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        14 ~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      .+++.|++.||++...     ...+.|.+++++++++++++||+|++..++||+++   ..+|++++++|||||+|++.+
T Consensus       123 D~s~~~l~~a~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         123 EPVKHMLEEAKRELAG-----MPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             ESCHHHHHHHHHHTTT-----SSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCHHHHHhhhccccc-----cccceeEEccccccccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            3588999999988532     24578999999999999999999999999999986   478999999999999999988


Q ss_pred             cCCCCc--------ccHHHHHHHHHHHHHHcCCcchhh
Q 024162           91 KLTSDK--------GDVDKAISALEGKLLLAGFLDAQR  120 (271)
Q Consensus        91 ~~~~~~--------~e~~~~~~~l~~~l~laGF~~v~~  120 (271)
                      ......        ..+....+.+...+..+||..++.
T Consensus       198 ~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~  235 (254)
T d1xtpa_         198 NCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE  235 (254)
T ss_dssp             EBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred             cCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEE
Confidence            643210        011112345667788999977654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.94  E-value=7.4e-10  Score=92.12  Aligned_cols=74  Identities=22%  Similarity=0.352  Sum_probs=63.4

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .|+.|++.|+++...    .+..+.++.++++++|+++++||+|++..+++|+++   ..+|++++|+|||||+|++..+
T Consensus        67 ~S~~~i~~ak~~~~~----~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1          67 ISEDMIRKAREYAKS----RESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             SCHHHHHHHHHHHHH----TTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccchhhhhhhhcc----ccccccccccccccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            478999999987422    235678899999999999999999999999999974   6799999999999999998876


Q ss_pred             C
Q 024162           92 L   92 (271)
Q Consensus        92 ~   92 (271)
                      .
T Consensus       143 ~  143 (226)
T d1ve3a1         143 D  143 (226)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.78  E-value=1.3e-08  Score=85.65  Aligned_cols=75  Identities=16%  Similarity=0.197  Sum_probs=58.0

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .|+.|++.|+++....  ....++.+..+++..+  +...+|+|++++.+||++.   ..+|++++|+|||||.|++.+.
T Consensus        73 ~S~~ml~~A~~~~~~~--~~~~~~~~~~~d~~~~--~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~  148 (225)
T d1im8a_          73 NSQPMVERCRQHIAAY--HSEIPVEILCNDIRHV--EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK  148 (225)
T ss_dssp             SCHHHHHHHHHHHHTS--CCSSCEEEECSCTTTC--CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHhHhh--cccchhhhccchhhcc--ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence            4899999999874211  1234566776666554  4568999999999999863   7899999999999999999986


Q ss_pred             CC
Q 024162           92 LT   93 (271)
Q Consensus        92 ~~   93 (271)
                      ..
T Consensus       149 ~~  150 (225)
T d1im8a_         149 FR  150 (225)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=4.4e-09  Score=89.68  Aligned_cols=76  Identities=17%  Similarity=0.167  Sum_probs=64.0

Q ss_pred             ccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           14 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        14 ~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .+++.|++.+|++....  ....++.|++++++++ +++++||+|++..+++|+++ ..++++++|+|||||++++.+..
T Consensus        63 D~s~~~~~~ar~~~~~~--gl~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_          63 DMSSLFTAQAKRRAEEL--GVSERVHFIHNDAAGY-VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             ESCHHHHHHHHHHHHHT--TCTTTEEEEESCCTTC-CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             ecccchhhHHHHHHHHh--hccccchhhhhHHhhc-cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEecc
Confidence            35899999998874221  1234689999999998 57899999999999999988 99999999999999999998764

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=5.1e-09  Score=91.14  Aligned_cols=68  Identities=25%  Similarity=0.361  Sum_probs=58.6

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      .++.|++.++++.        .++.|++++++++|+++++||+|++..++++      ++|++|+|||||+|++.++..+
T Consensus       116 ~s~~~~~~a~~~~--------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~------~~e~~rvLkpgG~l~~~~p~~~  181 (268)
T d1p91a_         116 VSKVAIKAAAKRY--------PQVTFCVASSHRLPFSDTSMDAIIRIYAPCK------AEELARVVKPGGWVITATPGPR  181 (268)
T ss_dssp             SCHHHHHHHHHHC--------TTSEEEECCTTSCSBCTTCEEEEEEESCCCC------HHHHHHHEEEEEEEEEEEECTT
T ss_pred             chHhhhhhhhccc--------ccccceeeehhhccCCCCCEEEEeecCCHHH------HHHHHHHhCCCcEEEEEeeCCc
Confidence            3678898888775        5678999999999999999999999887765      5899999999999999998865


Q ss_pred             Cc
Q 024162           95 DK   96 (271)
Q Consensus        95 ~~   96 (271)
                      .+
T Consensus       182 ~l  183 (268)
T d1p91a_         182 HL  183 (268)
T ss_dssp             TT
T ss_pred             ch
Confidence            43

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.77  E-value=3.2e-09  Score=89.23  Aligned_cols=69  Identities=25%  Similarity=0.366  Sum_probs=58.6

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEec-cccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~-~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      +|+.|++.|+++..       .  .++.++++++|+++++||+|++. .++||+++ ..+|++++|+|||||.|++..+.
T Consensus        72 ~s~~~l~~a~~~~~-------~--~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1          72 PSKEMLEVAREKGV-------K--NVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             SCHHHHHHHHHHTC-------S--CEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             cccccccccccccc-------c--ccccccccccccccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence            46889999998751       1  25679999999999999999985 57888887 88999999999999999998764

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.68  E-value=3.3e-08  Score=83.20  Aligned_cols=70  Identities=13%  Similarity=0.135  Sum_probs=60.9

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHH-HhccCCcEEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEIS-RVLKPGGTILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~-RvLKPGG~l~i~~~~   92 (271)
                      ++++|++.+|++..       .++.+++++++.+++ +++||+|++..+++|+++ ..+|.+++ |+|||||.+++..+.
T Consensus        50 ~s~~~i~~a~~~~~-------~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn  121 (225)
T d2p7ia1          50 ASEEAISHAQGRLK-------DGITYIHSRFEDAQL-PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN  121 (225)
T ss_dssp             SCHHHHHHHHHHSC-------SCEEEEESCGGGCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CcHHHhhhhhcccc-------ccccccccccccccc-ccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCC
Confidence            57899999998752       357889999998886 579999999999999988 88899998 899999999998764

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.61  E-value=3.7e-08  Score=86.00  Aligned_cols=73  Identities=12%  Similarity=0.194  Sum_probs=62.2

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++.|++.+|++...    ...++.|+++|++++++++ +||+|++..++||+++ ..+|++++|+|||||+|++.++.
T Consensus        60 ~s~~~l~~a~~~~~~----~~~~~~f~~~d~~~~~~~~-~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1          60 SGETLLAEARELFRL----LPYDSEFLEGDATEIELND-KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             CCHHHHHHHHHHHHS----SSSEEEEEESCTTTCCCSS-CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cchhHhhhhhccccc----ccccccccccccccccccC-CceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            378899999987421    2357899999999999864 7999999999999987 89999999999999999998853

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.57  E-value=4.5e-08  Score=82.77  Aligned_cols=73  Identities=16%  Similarity=0.226  Sum_probs=59.6

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEec-cccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SSSHELPG---DQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~-~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      +|+.|++.|+++..    ..+.++.+.++++++++++ +.||+|++. .+++|++.   ..+|++++|+|||||+|++..
T Consensus        71 ~s~~mi~~a~~~~~----~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1          71 LHEEMLRVARRKAK----ERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             SCHHHHHHHHHHHH----HTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eccccccccccccc----cccccchheehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            57899999999853    2335789999999999987 489999986 46666643   689999999999999999876


Q ss_pred             cC
Q 024162           91 KL   92 (271)
Q Consensus        91 ~~   92 (271)
                      ..
T Consensus       146 ~~  147 (251)
T d1wzna1         146 PC  147 (251)
T ss_dssp             EC
T ss_pred             cc
Confidence            43

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.55  E-value=1e-07  Score=81.69  Aligned_cols=100  Identities=16%  Similarity=0.232  Sum_probs=67.9

Q ss_pred             HHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCCC
Q 024162           18 AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        18 ~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      .|++.++++...  .....++.++.+|+.+ +. ..+||+|++.+++|++++   ..+|++++|+|||||+|+|.+....
T Consensus       114 ~~~~~a~~~~~~--~~~~~rv~~~~~D~~~-~~-~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~  189 (253)
T d1tw3a2         114 GTVDTARSYLKD--EGLSDRVDVVEGDFFE-PL-PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDL  189 (253)
T ss_dssp             THHHHHHHHHHH--TTCTTTEEEEECCTTS-CC-SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBC
T ss_pred             HHHHHHHHHHHH--hhcccchhhccccchh-hc-ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            467777776421  1123578999999754 22 357999999999999986   4789999999999999999986432


Q ss_pred             Cc---ccHHH---------------HHHHHHHHHHHcCCcchhhh
Q 024162           95 DK---GDVDK---------------AISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        95 ~~---~e~~~---------------~~~~l~~~l~laGF~~v~~~  121 (271)
                      ..   .....               +.+++...+..+||..++..
T Consensus       190 ~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~  234 (253)
T d1tw3a2         190 HENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVR  234 (253)
T ss_dssp             GGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred             CCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEE
Confidence            11   11000               12345566788888865543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.45  E-value=2.1e-07  Score=76.55  Aligned_cols=74  Identities=22%  Similarity=0.248  Sum_probs=60.2

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .++.|++.++++...   ..-.++.+...++..+++ +++||+|++..++||++.   ..++++++++|+|||++++...
T Consensus        60 ~s~~~l~~a~~~~~~---~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1          60 KNPASMANLERIKAA---EGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             SCHHHHHHHHHHHHH---TTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CcHHHHHHHHHHhhh---ccccchhhhheecccccc-cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            477888888876421   122468899999998886 678999999999999874   6899999999999999999875


Q ss_pred             C
Q 024162           92 L   92 (271)
Q Consensus        92 ~   92 (271)
                      .
T Consensus       136 ~  136 (198)
T d2i6ga1         136 M  136 (198)
T ss_dssp             B
T ss_pred             c
Confidence            4

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.42  E-value=5.2e-07  Score=76.81  Aligned_cols=105  Identities=15%  Similarity=0.158  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-CCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-PVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      ++.|++.++++...     ..++..+.++.... ++.+..+|++++...+++..+ ..++.+++|+|||||++++.....
T Consensus       107 S~~~i~~a~~~a~~-----~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~  181 (230)
T d1g8sa_         107 APRIMRELLDACAE-----RENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKAR  181 (230)
T ss_dssp             CHHHHHHHHHHTTT-----CTTEEEEECCTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             cHHHHHHHHHHHhh-----hcccceEEEeeccCcccccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeecc
Confidence            57788888877532     24566677777644 467788898888777777776 889999999999999999987543


Q ss_pred             C--CcccHHHHHHHHHHHHHHcCCcchhhhhhcc
Q 024162           94 S--DKGDVDKAISALEGKLLLAGFLDAQRIQLKS  125 (271)
Q Consensus        94 ~--~~~e~~~~~~~l~~~l~laGF~~v~~~~~~~  125 (271)
                      .  .........++....|..+||..++.....|
T Consensus       182 ~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL~p  215 (230)
T d1g8sa_         182 SIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEP  215 (230)
T ss_dssp             GTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence            2  2234445566777889999998877665444

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.42  E-value=1.9e-07  Score=79.78  Aligned_cols=76  Identities=18%  Similarity=0.135  Sum_probs=60.7

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCC-CCCceeEEEeccccccCCh-----HHHHHHHHHhccCCcEEEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV-ESFSIDTVLSISSSHELPG-----DQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~-~~~sfD~V~s~~~l~~~~~-----~~~L~ei~RvLKPGG~l~i   88 (271)
                      .|+.|++.|+++....  ....++.|.++|+...++ ...+||+|++..++||+..     ..++++++|+|||||+|++
T Consensus        55 ~S~~~l~~A~~r~~~~--~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~  132 (252)
T d1ri5a_          55 IAEVSINDARVRARNM--KRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM  132 (252)
T ss_dssp             SCHHHHHHHHHHHHTS--CCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHhc--CCCcceEEEEcchhhhcccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEE
Confidence            4788999998874221  223578999999988776 4678999999999988732     5799999999999999999


Q ss_pred             EecC
Q 024162           89 YKKL   92 (271)
Q Consensus        89 ~~~~   92 (271)
                      ..+.
T Consensus       133 ~~~~  136 (252)
T d1ri5a_         133 TVPS  136 (252)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            8765

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1e-07  Score=82.45  Aligned_cols=80  Identities=13%  Similarity=0.042  Sum_probs=60.9

Q ss_pred             ccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCC------CCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEE
Q 024162           14 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ------LPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTI   86 (271)
Q Consensus        14 ~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~------lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l   86 (271)
                      -+++.|++.++++........+..+.+...+++.      .++++++||+|++..++||+++ ..+|++++++|||||.|
T Consensus        77 D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l  156 (280)
T d1jqea_          77 EPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKM  156 (280)
T ss_dssp             CCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEE
T ss_pred             eCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEE
Confidence            4789999999987422111122334556655542      3678999999999999999987 89999999999999999


Q ss_pred             EEEecCC
Q 024162           87 LIYKKLT   93 (271)
Q Consensus        87 ~i~~~~~   93 (271)
                      ++..+..
T Consensus       157 ~i~~~~~  163 (280)
T d1jqea_         157 LIIVVSG  163 (280)
T ss_dssp             EEEEECT
T ss_pred             EEEEecC
Confidence            9988764

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.35  E-value=2.8e-07  Score=77.99  Aligned_cols=73  Identities=14%  Similarity=0.160  Sum_probs=58.2

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEec-cccccCCh----HHHHHHHHHhccCCcEEEEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SSSHELPG----DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~-~~l~~~~~----~~~L~ei~RvLKPGG~l~i~   89 (271)
                      .|+.|++.|+++..    ..+.++.++++|+.+++++ ++||+|++. .+++++.+    ..+|+++++.|||||.|++.
T Consensus        67 ~S~~ml~~A~~~~~----~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_          67 LSQEMLSEAENKFR----SQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             SCHHHHHHHHHHHH----HTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cchhhhhhcccccc----ccCccceeeccchhhhccc-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            58999999998752    2335789999999998874 589999985 45666642    67999999999999999986


Q ss_pred             ecC
Q 024162           90 KKL   92 (271)
Q Consensus        90 ~~~   92 (271)
                      .+.
T Consensus       142 ~~~  144 (246)
T d1y8ca_         142 INS  144 (246)
T ss_dssp             EEC
T ss_pred             eCC
Confidence            543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.30  E-value=6.6e-07  Score=76.97  Aligned_cols=73  Identities=16%  Similarity=0.252  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .+.+++.++++...  .....++.++.++... +++ ..||+|++.+++|++++   ..+|++++|+|||||+|+|.+..
T Consensus       113 lp~~~~~a~~~~~~--~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         113 LAGPAERARRRFAD--AGLADRVTVAEGDFFK-PLP-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             CHHHHHHHHHHHHH--TTCTTTEEEEECCTTS-CCS-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ChHHHHHHHHHHhh--cCCcceeeeeeeeccc-ccc-ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            35677777776421  1233568888888754 444 46999999999999986   57899999999999999999864

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.29  E-value=7.2e-07  Score=77.63  Aligned_cols=95  Identities=17%  Similarity=0.167  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      .+.|++.|++...........++.++++|+.+.++++++||+|+.-     +++ ..++.+++|+|||||+|++..+.  
T Consensus       130 ~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~ld-----lp~P~~~l~~~~~~LkpGG~lv~~~P~--  202 (264)
T d1i9ga_         130 RADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLD-----MLAPWEVLDAVSRLLVAGGVLMVYVAT--  202 (264)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEESS--
T ss_pred             CHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEEe-----cCCHHHHHHHHHhccCCCCEEEEEeCc--
Confidence            4678888887643211123357899999999999999999999863     344 67899999999999999998875  


Q ss_pred             CcccHHHHHHHHHHHHH-HcCCcchhhhh
Q 024162           95 DKGDVDKAISALEGKLL-LAGFLDAQRIQ  122 (271)
Q Consensus        95 ~~~e~~~~~~~l~~~l~-laGF~~v~~~~  122 (271)
                          +.+. +.+...++ ..||.+++..+
T Consensus       203 ----i~Qv-~~~~~~l~~~~~f~~i~~~E  226 (264)
T d1i9ga_         203 ----VTQL-SRIVEALRAKQCWTEPRAWE  226 (264)
T ss_dssp             ----HHHH-HHHHHHHHHHSSBCCCEEEC
T ss_pred             ----cChH-HHHHHHHHHcCCeecceEEE
Confidence                2221 12333443 56899877654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.3e-06  Score=73.54  Aligned_cols=101  Identities=19%  Similarity=0.212  Sum_probs=66.8

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCC--CCCCCCCceeEEEe-----ccccccCCh-HHHHHHHHHhccCCcEE
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLS--QLPVESFSIDTVLS-----ISSSHELPG-DQLLEEISRVLKPGGTI   86 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e--~lp~~~~sfD~V~s-----~~~l~~~~~-~~~L~ei~RvLKPGG~l   86 (271)
                      .++.|++.++++...    ....+..+.+++.  ..++++++||.|+.     ...++++.+ ..++++++|+|||||+|
T Consensus        84 ~s~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~  159 (229)
T d1zx0a1          84 CNDGVFQRLRDWAPR----QTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVL  159 (229)
T ss_dssp             CCHHHHHHHHHHGGG----CSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEE
T ss_pred             CCHHHHHHHHHHhhh----cccccccccccccccccccccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEE
Confidence            478899999988532    2345666666654  34678899999983     445566666 88999999999999999


Q ss_pred             EEEecCC------CCcccHHHH-HHHHHHHHHHcCCcchh
Q 024162           87 LIYKKLT------SDKGDVDKA-ISALEGKLLLAGFLDAQ  119 (271)
Q Consensus        87 ~i~~~~~------~~~~e~~~~-~~~l~~~l~laGF~~v~  119 (271)
                      ++.+...      ......... .......+..+||...+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agF~~~~  199 (229)
T d1zx0a1         160 TYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRREN  199 (229)
T ss_dssp             EECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGGG
T ss_pred             EEEecCCcchhhhhhhhhcchhhhhHHHHHHHHCCCeeEE
Confidence            8854321      011122211 23445667889997543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.5e-06  Score=73.37  Aligned_cols=73  Identities=25%  Similarity=0.228  Sum_probs=54.7

Q ss_pred             CCCCCCCceeEEEeccccccCC----h-HHHHHHHHHhccCCcEEEEEecCCCCc--------ccHHHHHHHHHHHHHHc
Q 024162           47 QLPVESFSIDTVLSISSSHELP----G-DQLLEEISRVLKPGGTILIYKKLTSDK--------GDVDKAISALEGKLLLA  113 (271)
Q Consensus        47 ~lp~~~~sfD~V~s~~~l~~~~----~-~~~L~ei~RvLKPGG~l~i~~~~~~~~--------~e~~~~~~~l~~~l~la  113 (271)
                      ..+++.++||+|++..++||+.    + ..++++++|+|||||+|++.++.....        ....-..+.+...+..|
T Consensus       145 ~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  224 (257)
T d2a14a1         145 LAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDA  224 (257)
T ss_dssp             TTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHT
T ss_pred             cccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHC
Confidence            3467899999999999998875    2 578999999999999999998754311        00001134777889999


Q ss_pred             CCcchh
Q 024162          114 GFLDAQ  119 (271)
Q Consensus       114 GF~~v~  119 (271)
                      ||..++
T Consensus       225 Gf~v~~  230 (257)
T d2a14a1         225 GFDIEQ  230 (257)
T ss_dssp             TEEEEE
T ss_pred             CCEEEE
Confidence            998544

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.12  E-value=3.9e-06  Score=70.10  Aligned_cols=105  Identities=16%  Similarity=0.100  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEec-cccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~-~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      ++.|++.++++....     .++.++.+++...+.....+|.|... ..+++..+ ..++++++|+|||||++++.....
T Consensus        89 s~~~i~~a~~~a~~~-----~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  163 (209)
T d1nt2a_          89 SAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKAR  163 (209)
T ss_dssp             CHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             CHHHHHHHHHHhhcc-----CCceEEEeeccCccccccccceEEEEEecccChhhHHHHHHHHHHHhccCCeEEEEEEcc
Confidence            566777777764321     47889999998877666655555332 33444445 889999999999999999987532


Q ss_pred             C--CcccHHHHHHHHHHHHHHcCCcchhhhhhccc
Q 024162           94 S--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSV  126 (271)
Q Consensus        94 ~--~~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~  126 (271)
                      .  ...+...........+ .+||..++.....|+
T Consensus       164 ~~d~~~~~~~~~~~~~~~l-~~gf~i~E~i~L~P~  197 (209)
T d1nt2a_         164 SIDSTAEPEEVFKSVLKEM-EGDFKIVKHGSLMPY  197 (209)
T ss_dssp             HHCTTSCHHHHHHHHHHHH-HTTSEEEEEEECTTT
T ss_pred             ccCCCCCHHHHHHHHHHHH-HcCCEEEEEEccCCC
Confidence            1  1122223333333333 489988776655443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.12  E-value=3.3e-06  Score=70.45  Aligned_cols=72  Identities=14%  Similarity=0.099  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEeccccccCCh---------HHHHHHHHHhccCCc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSSHELPG---------DQLLEEISRVLKPGG   84 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~l~~~~~---------~~~L~ei~RvLKPGG   84 (271)
                      +..++..+.++..   .....++.++.+|+..+.  ++++++|.|+..+...|...         ..+|.+++|+|||||
T Consensus        62 ~~~~i~~a~~~~~---~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG  138 (204)
T d2fcaa1          62 FKSVIVTAVQKVK---DSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGG  138 (204)
T ss_dssp             CHHHHHHHHHHHH---HSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSC
T ss_pred             chHHHHHHHHHHH---HHhccCchhcccchhhhhcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCc
Confidence            4555666555531   122357999999998876  88999999999887666542         589999999999999


Q ss_pred             EEEEEe
Q 024162           85 TILIYK   90 (271)
Q Consensus        85 ~l~i~~   90 (271)
                      .|++.+
T Consensus       139 ~l~i~T  144 (204)
T d2fcaa1         139 SIHFKT  144 (204)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999976

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.10  E-value=5.4e-06  Score=67.80  Aligned_cols=75  Identities=13%  Similarity=0.111  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh--HHHHHHHHHhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG--DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~--~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ++.|++.+++.... ....+.++.+..+++.+ ++++++||+|++...+|+..+  ..++.++.|.|||||++++....
T Consensus        83 s~~~i~~a~~n~~~-~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  159 (194)
T d1dusa_          83 NRRAIKLAKENIKL-NNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             CHHHHHHHHHHHHH-TTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             ccccchhHHHHHHH-hCCccceEEEEEcchhh-hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence            57788888875321 11233568899999876 677899999999888776654  78899999999999999886543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.00  E-value=5.9e-06  Score=71.16  Aligned_cols=93  Identities=16%  Similarity=0.116  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD   95 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~   95 (271)
                      ++.|++.+|+...    ..+..+.+.++++.. .++.++||+|+++...+.  ...++.++.|+|||||+|+++..... 
T Consensus       151 s~~av~~A~~na~----~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~~--l~~l~~~~~~~LkpGG~lilSgil~~-  222 (254)
T d2nxca1         151 DPMVLPQAEANAK----RNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAEL--HAALAPRYREALVPGGRALLTGILKD-  222 (254)
T ss_dssp             CGGGHHHHHHHHH----HTTCCCEEEESCHHH-HGGGCCEEEEEEECCHHH--HHHHHHHHHHHEEEEEEEEEEEEEGG-
T ss_pred             ChHHHHHHHHHHH----HcCCceeEEeccccc-cccccccchhhhcccccc--HHHHHHHHHHhcCCCcEEEEEecchh-
Confidence            3445666665431    123566788888765 366789999998643322  16788999999999999999865421 


Q ss_pred             cccHHHHHHHHHHHHHHcCCcchhhhh
Q 024162           96 KGDVDKAISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus        96 ~~e~~~~~~~l~~~l~laGF~~v~~~~  122 (271)
                        ..    ..+...+..+||..++...
T Consensus       223 --~~----~~v~~~~~~~Gf~~~~~~~  243 (254)
T d2nxca1         223 --RA----PLVREAMAGAGFRPLEEAA  243 (254)
T ss_dssp             --GH----HHHHHHHHHTTCEEEEEEE
T ss_pred             --hH----HHHHHHHHHCCCEEEEEEE
Confidence              11    2556678889998766543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=6.9e-06  Score=68.75  Aligned_cols=77  Identities=9%  Similarity=0.012  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHhCchh--------------hhcCCCCeEEEeccCCCCC-CCCCceeEEEeccccccCCh---HHHHHHHH
Q 024162           16 VSAVLNAIRDLGDEA--------------VEQCDPQIITQASSLSQLP-VESFSIDTVLSISSSHELPG---DQLLEEIS   77 (271)
Q Consensus        16 s~~mv~~ar~~~~~~--------------~~~~~~~v~~~~~d~e~lp-~~~~sfD~V~s~~~l~~~~~---~~~L~ei~   77 (271)
                      |+.|++.++++....              .......+.+.++|+..++ ...++||+|+....+|+++.   ..++++++
T Consensus        76 S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~  155 (229)
T d2bzga1          76 SELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMF  155 (229)
T ss_dssp             CHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHH
Confidence            677788887763210              0123457899999998774 66889999999999998864   78999999


Q ss_pred             HhccCCcEEEEEecC
Q 024162           78 RVLKPGGTILIYKKL   92 (271)
Q Consensus        78 RvLKPGG~l~i~~~~   92 (271)
                      |+|||||++++....
T Consensus       156 ~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         156 SLLGKKFQYLLCVLS  170 (229)
T ss_dssp             HTEEEEEEEEEEEEE
T ss_pred             hhcCCcceEEEEEcc
Confidence            999999998887654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.94  E-value=4.2e-06  Score=66.89  Aligned_cols=78  Identities=10%  Similarity=0.062  Sum_probs=60.1

Q ss_pred             cHHHHHHHHHHhCchhh---------hcCCCCeEEEeccCCCCC-CCCCceeEEEeccccccCCh---HHHHHHHHHhcc
Q 024162           15 PVSAVLNAIRDLGDEAV---------EQCDPQIITQASSLSQLP-VESFSIDTVLSISSSHELPG---DQLLEEISRVLK   81 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~---------~~~~~~v~~~~~d~e~lp-~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLK   81 (271)
                      .|+.|++.++++.+...         ......+.+.++++..++ ....+||+|++..+++++..   ..++++++++||
T Consensus        50 ~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lk  129 (201)
T d1pjza_          50 LSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMP  129 (201)
T ss_dssp             ECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSC
T ss_pred             ccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcC
Confidence            48899999998742110         011345678889888886 44678999999999999875   789999999999


Q ss_pred             CCcEEEEEecC
Q 024162           82 PGGTILIYKKL   92 (271)
Q Consensus        82 PGG~l~i~~~~   92 (271)
                      |||++++....
T Consensus       130 pgG~l~l~~~~  140 (201)
T d1pjza_         130 QACSGLLITLE  140 (201)
T ss_dssp             SEEEEEEEEES
T ss_pred             CCcEEEEEEcc
Confidence            99999887654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=2.6e-06  Score=73.17  Aligned_cols=72  Identities=18%  Similarity=0.298  Sum_probs=52.9

Q ss_pred             CCCCCCceeEEEeccccccCC----h-HHHHHHHHHhccCCcEEEEEecCCCCc--------ccHHHHHHHHHHHHHHcC
Q 024162           48 LPVESFSIDTVLSISSSHELP----G-DQLLEEISRVLKPGGTILIYKKLTSDK--------GDVDKAISALEGKLLLAG  114 (271)
Q Consensus        48 lp~~~~sfD~V~s~~~l~~~~----~-~~~L~ei~RvLKPGG~l~i~~~~~~~~--------~e~~~~~~~l~~~l~laG  114 (271)
                      .++..++||+|++.+++|+++    + ..++++++|+|||||.|++......+.        ....-..+.+...+..+|
T Consensus       151 ~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aG  230 (263)
T d2g72a1         151 GSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSG  230 (263)
T ss_dssp             SCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTT
T ss_pred             CCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCC
Confidence            345677899999999999885    2 778999999999999999987643210        000012347778899999


Q ss_pred             Ccchh
Q 024162          115 FLDAQ  119 (271)
Q Consensus       115 F~~v~  119 (271)
                      |..++
T Consensus       231 f~v~~  235 (263)
T d2g72a1         231 YKVRD  235 (263)
T ss_dssp             EEEEE
T ss_pred             CeEEE
Confidence            97653

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.82  E-value=2.1e-05  Score=67.57  Aligned_cols=93  Identities=16%  Similarity=0.144  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD   95 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~   95 (271)
                      .+.+++.|++.....  ....++.+..+|+.+. +++.+||+|+....    .+..++.+++++|||||+|+++.+.   
T Consensus       119 ~e~~~~~A~~n~~~~--~~~~nv~~~~~Di~~~-~~~~~fD~V~ld~p----~p~~~l~~~~~~LKpGG~lv~~~P~---  188 (250)
T d1yb2a1         119 DEDNLKKAMDNLSEF--YDIGNVRTSRSDIADF-ISDQMYDAVIADIP----DPWNHVQKIASMMKPGSVATFYLPN---  188 (250)
T ss_dssp             CHHHHHHHHHHHHTT--SCCTTEEEECSCTTTC-CCSCCEEEEEECCS----CGGGSHHHHHHTEEEEEEEEEEESS---
T ss_pred             CHHHHHHHHHHHHHh--cCCCceEEEEeeeecc-cccceeeeeeecCC----chHHHHHHHHHhcCCCceEEEEeCC---
Confidence            477888888763211  1235789999999876 56789999986422    1267899999999999999998765   


Q ss_pred             cccHHHHHHHHHHHHHHcCCcchhhhh
Q 024162           96 KGDVDKAISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus        96 ~~e~~~~~~~l~~~l~laGF~~v~~~~  122 (271)
                         +.+ .+.+...+..+||.+++..+
T Consensus       189 ---i~Q-v~~~~~~l~~~gf~~i~~~E  211 (250)
T d1yb2a1         189 ---FDQ-SEKTVLSLSASGMHHLETVE  211 (250)
T ss_dssp             ---HHH-HHHHHHHSGGGTEEEEEEEE
T ss_pred             ---cCh-HHHHHHHHHHCCCceeEEEE
Confidence               111 23445667789998876554

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.81  E-value=1.8e-05  Score=68.86  Aligned_cols=73  Identities=7%  Similarity=0.119  Sum_probs=55.4

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .|+.+++.++++....  .....+.+...+...+   +++||.|+++.+++|++.   +.++++++|+|||||++++++.
T Consensus        83 ls~~q~~~a~~~~~~~--~l~~~~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i  157 (280)
T d2fk8a1          83 LSKNQHARCEQVLASI--DTNRSRQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS  157 (280)
T ss_dssp             SCHHHHHHHHHHHHTS--CCSSCEEEEESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             chHHHHHHHHHHHHhh--ccccchhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEe
Confidence            4778888888874221  1234566666665544   468999999999999864   7899999999999999999874


Q ss_pred             C
Q 024162           92 L   92 (271)
Q Consensus        92 ~   92 (271)
                      .
T Consensus       158 ~  158 (280)
T d2fk8a1         158 V  158 (280)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.80  E-value=5.4e-05  Score=62.79  Aligned_cols=73  Identities=23%  Similarity=0.107  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEeccccccCC---------hHHHHHHHHHhccCCc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSSHELP---------GDQLLEEISRVLKPGG   84 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~l~~~~---------~~~~L~ei~RvLKPGG   84 (271)
                      +..++..+.++...   ....++.++.+++..+.  +++.++|.|+..+.-.|..         ...+|++++|+|||||
T Consensus        64 ~~~~v~~a~~~~~~---~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG  140 (204)
T d1yzha1          64 QKSVLSYALDKVLE---VGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENG  140 (204)
T ss_dssp             CHHHHHHHHHHHHH---HCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTC
T ss_pred             cHHHHHHHHHhhhh---hccccceeeecCHHHHhhhccCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCc
Confidence            45556665555311   12357999999998876  7899999999987655543         2689999999999999


Q ss_pred             EEEEEec
Q 024162           85 TILIYKK   91 (271)
Q Consensus        85 ~l~i~~~   91 (271)
                      .|++.+-
T Consensus       141 ~l~i~TD  147 (204)
T d1yzha1         141 EIHFKTD  147 (204)
T ss_dssp             EEEEEES
T ss_pred             EEEEEEC
Confidence            9998763

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.78  E-value=9e-06  Score=71.30  Aligned_cols=73  Identities=10%  Similarity=0.118  Sum_probs=54.2

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh----------HHHHHHHHHhccCCc
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG----------DQLLEEISRVLKPGG   84 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~----------~~~L~ei~RvLKPGG   84 (271)
                      .|+..++.++++....  .....+.+...+   .++.+++||.|+|+-++.|+.+          +.++++++|+|||||
T Consensus        92 ~s~~q~~~a~~~~~~~--~l~~~v~~~~~d---~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG  166 (291)
T d1kpia_          92 LSENQYAHDKAMFDEV--DSPRRKEVRIQG---WEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDG  166 (291)
T ss_dssp             SCHHHHHHHHHHHHHS--CCSSCEEEEECC---GGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTC
T ss_pred             chHHHHHHHHHHHHhh--ccchhhhhhhhc---ccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCC
Confidence            4667777777764221  122346665554   4566889999999998888753          689999999999999


Q ss_pred             EEEEEecC
Q 024162           85 TILIYKKL   92 (271)
Q Consensus        85 ~l~i~~~~   92 (271)
                      ++++++..
T Consensus       167 ~~~l~~i~  174 (291)
T d1kpia_         167 RMLLHTIT  174 (291)
T ss_dssp             EEEEEEEE
T ss_pred             ceEEEEEe
Confidence            99998865

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.76  E-value=7.4e-05  Score=63.01  Aligned_cols=122  Identities=16%  Similarity=0.095  Sum_probs=73.9

Q ss_pred             cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCC---CCCCCCCceeEEEeccccccCCh-HHHHHHHHHh
Q 024162            4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLS---QLPVESFSIDTVLSISSSHELPG-DQLLEEISRV   79 (271)
Q Consensus         4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e---~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~Rv   79 (271)
                      +.++.+|.    ++.|++.++++...     ..++..+..++.   ..++....+|+|+..  +++... ..++.+++|+
T Consensus        99 G~V~aVD~----s~~~l~~a~~~a~~-----~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d--~~~~~~~~~~l~~~~~~  167 (227)
T d1g8aa_          99 GKIFGIEF----SPRVLRELVPIVEE-----RRNIVPILGDATKPEEYRALVPKVDVIFED--VAQPTQAKILIDNAEVY  167 (227)
T ss_dssp             SEEEEEES----CHHHHHHHHHHHSS-----CTTEEEEECCTTCGGGGTTTCCCEEEEEEC--CCSTTHHHHHHHHHHHH
T ss_pred             CEEEEEeC----cHHHHHHHHHHHHh-----cCCceEEEEECCCcccccccccceEEEEEE--ccccchHHHHHHHHHHh
Confidence            44555554    45677777766422     144566666664   344556789988764  334444 8899999999


Q ss_pred             ccCCcEEEEEecCCC--CcccHHHHHHHHHHHHHHcCCcchhhhhhccccCcceeEEEEEeeC
Q 024162           80 LKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKK  140 (271)
Q Consensus        80 LKPGG~l~i~~~~~~--~~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~~~~~i~a~K  140 (271)
                      |||||++++......  ........... ...+...||..++.....|+..   .++.+.++|
T Consensus       168 LkpgG~lvi~~ka~~~~~~~~~~~v~~~-v~~l~~~gf~iie~i~L~p~~~---~H~~vv~rK  226 (227)
T d1g8aa_         168 LKRGGYGMIAVKSRSIDVTKEPEQVFRE-VERELSEYFEVIERLNLEPYEK---DHALFVVRK  226 (227)
T ss_dssp             EEEEEEEEEEEEGGGTCTTSCHHHHHHH-HHHHHHTTSEEEEEEECTTTSS---SEEEEEEEC
T ss_pred             cccCCeEEEEEECCccCCCCCHHHHHHH-HHHHHHcCCEEEEEEcCCCCCC---ceEEEEEEe
Confidence            999999998865431  11122222222 3446678998877665444311   356677766

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.76  E-value=1.6e-05  Score=66.26  Aligned_cols=67  Identities=15%  Similarity=0.094  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      ++.|++.++++...   ....++.++++++...++.+++||+|++..++++++     .++++.|||||+|++..
T Consensus       109 ~~~~~~~a~~~~~~---~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~p-----~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         109 SRKICEIAKRNVER---LGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP-----ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             CHHHHHHHHHHHHH---TTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSCCC-----HHHHHHEEEEEEEEEEB
T ss_pred             chhhHHHhhhhHhh---hcccccccccCchHHccccccchhhhhhhccHHHhH-----HHHHHhcCCCcEEEEEE
Confidence            57788888887422   123578888999988888888999999998888876     45789999999998754

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.73  E-value=2.7e-05  Score=67.94  Aligned_cols=73  Identities=15%  Similarity=0.168  Sum_probs=56.8

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC--h-HHHHHHHHHhccCCcEEEEEec
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP--G-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~--~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .|...++.++++...  .....++.+..+|...++   ++||.|+++.++.|+.  + ..++++++|+|||||++++++.
T Consensus        93 ~s~~Q~~~a~~~~~~--~g~~~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i  167 (285)
T d1kpga_          93 LSKNQANHVQQLVAN--SENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  167 (285)
T ss_dssp             SCHHHHHHHHHHHHT--CCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             ccHHHHHHHHHHHHh--hhhhhhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence            467778888776421  123356888888887764   6899999999888884  3 8899999999999999999876


Q ss_pred             C
Q 024162           92 L   92 (271)
Q Consensus        92 ~   92 (271)
                      .
T Consensus       168 ~  168 (285)
T d1kpga_         168 T  168 (285)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.63  E-value=5.7e-05  Score=61.08  Aligned_cols=90  Identities=19%  Similarity=0.152  Sum_probs=64.1

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCC
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      .++.|++.+++.....  ....++.++++++.+++++...||+|++....+++  ..+++++.+.|||||++++..... 
T Consensus        63 ~~~~~l~~a~~n~~~~--gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~~~~--~~~~~~~~~~LkpgG~lvi~~~~~-  137 (186)
T d1l3ia_          63 RNPEAISTTEMNLQRH--GLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGEL--QEILRIIKDKLKPGGRIIVTAILL-  137 (186)
T ss_dssp             SCHHHHHHHHHHHHHT--TCCTTEEEEESCHHHHHTTSCCEEEEEESCCTTCH--HHHHHHHHHTEEEEEEEEEEECBH-
T ss_pred             CCHHHHHHHHHHHHHc--CCCcceEEEECchhhcccccCCcCEEEEeCccccc--hHHHHHHHHHhCcCCEEEEEeecc-
Confidence            3678888888874221  12247899999999888888999999987644332  688999999999999999876541 


Q ss_pred             CcccHHHHHHHHHHHHHHcCC
Q 024162           95 DKGDVDKAISALEGKLLLAGF  115 (271)
Q Consensus        95 ~~~e~~~~~~~l~~~l~laGF  115 (271)
                        ..    ...+...+...||
T Consensus       138 --e~----~~~~~~~l~~~~~  152 (186)
T d1l3ia_         138 --ET----KFEAMECLRDLGF  152 (186)
T ss_dssp             --HH----HHHHHHHHHHTTC
T ss_pred             --cc----HHHHHHHHHHcCC
Confidence              11    1234445666666

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.45  E-value=0.00013  Score=62.04  Aligned_cols=83  Identities=17%  Similarity=0.236  Sum_probs=59.8

Q ss_pred             CCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCCC---CcccHH---H-----
Q 024162           36 PQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTS---DKGDVD---K-----  101 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~~---~~~e~~---~-----  101 (271)
                      .++.++.+|+.+ +++  ..|+|+...++|.+++   ..+|++++++|+|||+|+|.+....   ......   .     
T Consensus       124 ~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~  200 (244)
T d1fp1d2         124 SGIEHVGGDMFA-SVP--QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNL  200 (244)
T ss_dssp             TTEEEEECCTTT-CCC--CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHH
T ss_pred             CCeEEecCCccc-ccc--cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHH
Confidence            578999998753 344  4599999999999986   6789999999999999999986321   100000   0     


Q ss_pred             ----------HHHHHHHHHHHcCCcchhhh
Q 024162          102 ----------AISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus       102 ----------~~~~l~~~l~laGF~~v~~~  121 (271)
                                +.+++...+..+||..++..
T Consensus       201 m~~~~~g~ert~~e~~~ll~~AGF~~v~v~  230 (244)
T d1fp1d2         201 MFITVGGRERTEKQYEKLSKLSGFSKFQVA  230 (244)
T ss_dssp             HHHHHSCCCEEHHHHHHHHHHTTCSEEEEE
T ss_pred             HHhhCCCcCCCHHHHHHHHHHcCCCceEEE
Confidence                      12355567888999887664

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.44  E-value=0.00025  Score=62.28  Aligned_cols=53  Identities=21%  Similarity=0.177  Sum_probs=44.6

Q ss_pred             CCCeEEEeccCCCCCCCCCceeEEEeccccccCC---h-HHHHHHHHHhccCCcEEE
Q 024162           35 DPQIITQASSLSQLPVESFSIDTVLSISSSHELP---G-DQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        35 ~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~---~-~~~L~ei~RvLKPGG~l~   87 (271)
                      ..++.+++++++++++++.+||+|++....+++.   . ..++.++.|+|||||+++
T Consensus        86 ~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_          86 SDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             cccceEEEeehhhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            3578999999999999999999999966554443   2 778999999999999986

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=2.2e-05  Score=69.62  Aligned_cols=56  Identities=16%  Similarity=0.102  Sum_probs=44.4

Q ss_pred             CCCeEEEeccCCCCCCCCCce--eEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 024162           35 DPQIITQASSLSQLPVESFSI--DTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        35 ~~~v~~~~~d~e~lp~~~~sf--D~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      ..+|.++++|+.++++.+..|  |+|++. .+.+.++ ...|.+++|+|||||++++...
T Consensus       209 ~~~i~~~~gd~~~~~~~~~~~~advi~~~-~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~  267 (328)
T d1nw3a_         209 HAEYTLERGDFLSEEWRERIANTSVIFVN-NFAFGPEVDHQLKERFANMKEGGRIVSSKP  267 (328)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCSEEEEC-CTTTCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             CCceEEEECcccccccccccCcceEEEEc-ceecchHHHHHHHHHHHhCCCCcEEEEecc
Confidence            357999999999999888766  556654 4455555 8899999999999999987653

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.41  E-value=0.0001  Score=63.60  Aligned_cols=92  Identities=12%  Similarity=0.126  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS   94 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~   94 (271)
                      ++.|++.|++.....  ....++.+...++.. .++...||.|+.     ++++ ..++.+++++|||||+|++..+.. 
T Consensus       137 ~~~~~~~A~~~~~~~--g~~~~v~~~~~d~~~-~~~~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~-  207 (266)
T d1o54a_         137 REEFAKLAESNLTKW--GLIERVTIKVRDISE-GFDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTT-  207 (266)
T ss_dssp             CHHHHHHHHHHHHHT--TCGGGEEEECCCGGG-CCSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSH-
T ss_pred             CHHHHHHHHHHHHHh--ccccCcEEEeccccc-cccccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeCcc-
Confidence            567788887764221  112356777777643 467788999875     3444 788999999999999999987651 


Q ss_pred             CcccHHHHHHHHHHHHHHcCCcchhhhh
Q 024162           95 DKGDVDKAISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus        95 ~~~e~~~~~~~l~~~l~laGF~~v~~~~  122 (271)
                           . ..+.+...|..+||.+++..+
T Consensus       208 -----~-Qv~~~~~~l~~~gF~~i~~~E  229 (266)
T d1o54a_         208 -----N-QVQETLKKLQELPFIRIEVWE  229 (266)
T ss_dssp             -----H-HHHHHHHHHHHSSEEEEEEEC
T ss_pred             -----c-HHHHHHHHHHHCCceeEEEEE
Confidence                 1 123455667889999877664

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.40  E-value=2.5e-05  Score=67.48  Aligned_cols=77  Identities=18%  Similarity=0.281  Sum_probs=48.8

Q ss_pred             cHHHHHHHHHHhCchhh-hcCCCCeEEEeccCCC----CCCCCCceeEEEec-cccccCCh--------HHHHHHHHHhc
Q 024162           15 PVSAVLNAIRDLGDEAV-EQCDPQIITQASSLSQ----LPVESFSIDTVLSI-SSSHELPG--------DQLLEEISRVL   80 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~-~~~~~~v~~~~~d~e~----lp~~~~sfD~V~s~-~~l~~~~~--------~~~L~ei~RvL   80 (271)
                      .|+.|++.|+++..... ............++..    +| ...+||+|++. .+++|+++        ..+|++++|+|
T Consensus        86 ~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L  164 (292)
T d1xvaa_          86 ASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMV  164 (292)
T ss_dssp             SCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTE
T ss_pred             CchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHc
Confidence            48899999988742211 0001122333333322    22 24689999975 46666642        46999999999


Q ss_pred             cCCcEEEEEecC
Q 024162           81 KPGGTILIYKKL   92 (271)
Q Consensus        81 KPGG~l~i~~~~   92 (271)
                      ||||+|++..+.
T Consensus       165 kpgG~li~~~~~  176 (292)
T d1xvaa_         165 RPGGLLVIDHRN  176 (292)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             CcCcEEEEeecC
Confidence            999999997653

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.31  E-value=0.00047  Score=60.16  Aligned_cols=53  Identities=15%  Similarity=0.159  Sum_probs=45.3

Q ss_pred             CCeEEEeccCCCCCCCCCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEE
Q 024162           36 PQIITQASSLSQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~----~~~L~ei~RvLKPGG~l~i   88 (271)
                      .+|.++++++++++++.++||+|++....+++..    +.++..+.|+|||||+++-
T Consensus        82 ~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_          82 HVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             TTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             cccceEeccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            5689999999999999999999999766555432    7899999999999999973

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.24  E-value=0.00022  Score=58.14  Aligned_cols=52  Identities=13%  Similarity=0.162  Sum_probs=40.6

Q ss_pred             eEEEeccCCC-CCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEE
Q 024162           38 IITQASSLSQ-LPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        38 v~~~~~d~e~-lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~   89 (271)
                      +.+...++.. .+.+.+.||+|++.+++.++..   ..+++.+++.|+|||.|++-
T Consensus       115 v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         115 VEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             HHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            4454444433 2345688999999999999986   78999999999999998864

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00039  Score=60.41  Aligned_cols=54  Identities=17%  Similarity=0.188  Sum_probs=45.1

Q ss_pred             CCCeEEEeccCCCCCCCCCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEE
Q 024162           35 DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        35 ~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~----~~~L~ei~RvLKPGG~l~i   88 (271)
                      ..+|.++.+++++++++..+||+|++....++...    +.++....|.|||||+++-
T Consensus        83 ~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1          83 EDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             TTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             CccceEEEeeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            36789999999999999999999999766555542    6778888899999999974

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00063  Score=56.79  Aligned_cols=71  Identities=11%  Similarity=0.133  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHhCch-hhh-cCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDE-AVE-QCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~-~~~-~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .+.|++.+++.... +.. ....++.++.+|+...+.+.+.||+|++..+.++++     .++.+.|||||+|++...
T Consensus       110 ~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~~~~~~~~ip-----~~l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         110 IKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVP-----QALIDQLKPGGRLILPVG  182 (224)
T ss_dssp             CHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSCC-----HHHHHTEEEEEEEEEEES
T ss_pred             CHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhhhhcchhhcC-----HHHHhhcCCCcEEEEEEc
Confidence            56777777765321 110 122467888999998888899999999998888876     468899999999998654

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00049  Score=60.79  Aligned_cols=95  Identities=14%  Similarity=0.074  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHhCchh--------hhcCCCCeEEEeccCCCCC--CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCc
Q 024162           16 VSAVLNAIRDLGDEA--------VEQCDPQIITQASSLSQLP--VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGG   84 (271)
Q Consensus        16 s~~mv~~ar~~~~~~--------~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG   84 (271)
                      .+.|++.|++.....        ......++.+..+|+....  +++.+||.|+.-     +++ ..++.+++++|||||
T Consensus       132 ~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD-----~p~P~~~l~~~~~~LKpGG  206 (324)
T d2b25a1         132 RKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALD-----MLNPHVTLPVFYPHLKHGG  206 (324)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEEC-----SSSTTTTHHHHGGGEEEEE
T ss_pred             CHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccCCCCcceEeec-----CcCHHHHHHHHHHhccCCC
Confidence            456666666642110        1122357889999998664  467899999863     232 468999999999999


Q ss_pred             EEEEEecCCCCcccHHHHHHHHHHHHHH--cCCcchhhhh
Q 024162           85 TILIYKKLTSDKGDVDKAISALEGKLLL--AGFLDAQRIQ  122 (271)
Q Consensus        85 ~l~i~~~~~~~~~e~~~~~~~l~~~l~l--aGF~~v~~~~  122 (271)
                      +|++..+.      +.+. +.+...|+.  .||.+++.++
T Consensus       207 ~lv~~~P~------i~Qv-~~~~~~l~~~~~~f~~i~~~E  239 (324)
T d2b25a1         207 VCAVYVVN------ITQV-IELLDGIRTCELALSCEKISE  239 (324)
T ss_dssp             EEEEEESS------HHHH-HHHHHHHHHHTCCEEEEEEEC
T ss_pred             EEEEEeCC------HHHH-HHHHHHHHHcCCCceeeEEEE
Confidence            99998765      2221 123344543  4788877665

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=96.77  E-value=0.00079  Score=56.36  Aligned_cols=66  Identities=17%  Similarity=0.027  Sum_probs=50.4

Q ss_pred             cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162           15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   90 (271)
Q Consensus        15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~   90 (271)
                      .++.+++.++++..     ...++.++.+++.....+.+.||+|++..+..+++     ..+.+.|||||+|++-.
T Consensus       100 ~~~~~~~~A~~~~~-----~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~ip-----~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         100 INEKMYNYASKLLS-----YYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLL-----CKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             SCHHHHHHHHHHHT-----TCSSEEEEESCGGGCCGGGCCEEEEEESSBBSSCC-----HHHHHTEEEEEEEEEEE
T ss_pred             ccHHHHHHHHHHHh-----cccccccccCchhhcchhhhhHHHHHhhcchhhhh-----HHHHHhcCCCCEEEEEE
Confidence            46778888887632     12578999999876655678899999987777775     45778999999998754

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.37  E-value=0.0056  Score=51.41  Aligned_cols=54  Identities=13%  Similarity=0.193  Sum_probs=45.1

Q ss_pred             CCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCC---cEEEEEec
Q 024162           35 DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPG---GTILIYKK   91 (271)
Q Consensus        35 ~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPG---G~l~i~~~   91 (271)
                      ..+|+++.+|+.. +.+  .+|+++....+|.+++   ..+|+.+++.|+||   |+++|.+.
T Consensus       122 ~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~  181 (244)
T d1fp2a2         122 SNNLTYVGGDMFT-SIP--NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM  181 (244)
T ss_dssp             BTTEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             cCceEEEecCccc-CCC--CCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence            3679999999865 333  5799999999999987   57899999999999   78888875

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0082  Score=51.41  Aligned_cols=100  Identities=14%  Similarity=0.182  Sum_probs=62.4

Q ss_pred             EEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccc-------------cCC----
Q 024162            6 LALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH-------------ELP----   68 (271)
Q Consensus         6 l~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~-------------~~~----   68 (271)
                      .+.+|.+    +..++.|++.....   ...+|.++++|+.+ ++++..||+|+++-...             +-+    
T Consensus       135 v~avDis----~~Al~~A~~Na~~~---~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL  206 (274)
T d2b3ta1         135 IIAVDRM----PDAVSLAQRNAQHL---AIKNIHILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTAL  206 (274)
T ss_dssp             EEEECSS----HHHHHHHHHHHHHH---TCCSEEEECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTT
T ss_pred             eeeccch----hHHHhHHHHHHHHh---Ccccceeeeccccc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhc
Confidence            3445544    44555555543211   11358999999865 46678999999964211             100    


Q ss_pred             -------h--HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162           69 -------G--DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  121 (271)
Q Consensus        69 -------~--~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~  121 (271)
                             .  ..++.+..+.|+|||.|++.-...     ..   ..+...+..+||.+++..
T Consensus       207 ~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~-----q~---~~v~~~l~~~gf~~i~~~  260 (274)
T d2b3ta1         207 VAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ-----QG---EAVRQAFILAGYHDVETC  260 (274)
T ss_dssp             BCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS-----CH---HHHHHHHHHTTCTTCCEE
T ss_pred             ccccccchHHHHHHHHHHHhcCCCCEEEEEECch-----HH---HHHHHHHHHCCCCeEEEE
Confidence                   0  457888899999999999854321     11   255667788999877654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.19  E-value=0.0039  Score=51.61  Aligned_cols=68  Identities=12%  Similarity=0.126  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .+.+++.+++....   ....++.++++|+.......+.||+|+...+..+++.     .+...|||||+|++-..
T Consensus       110 ~~~l~~~a~~~l~~---~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~ip~-----~l~~qL~~gGrLv~pv~  177 (215)
T d1jg1a_         110 IPELVEFAKRNLER---AGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPE-----PLIEQLKIGGKLIIPVG  177 (215)
T ss_dssp             CHHHHHHHHHHHHH---TTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCH-----HHHHTEEEEEEEEEEEC
T ss_pred             cHHHHHHHHHHHHH---cCCceeEEEECccccCCcccCcceeEEeecccccCCH-----HHHHhcCCCCEEEEEEc
Confidence            46778888876421   2336799999999887777889999999888777763     46778999999987653

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.88  E-value=0.0038  Score=51.90  Aligned_cols=71  Identities=8%  Similarity=0.065  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHhCchh-h-hcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 024162           16 VSAVLNAIRDLGDEA-V-EQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        16 s~~mv~~ar~~~~~~-~-~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .+.+++.+++..... . .....++.+..+|......+.+.||+|+...+...++     ..+.+.|||||+|++...
T Consensus       119 ~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p-----~~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         119 QAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTP-----TELINQLASGGRLIVPVG  191 (223)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSEEEEEECSCBSSCC-----HHHHHTEEEEEEEEEEES
T ss_pred             CHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccceeeEEEEeechhch-----HHHHHhcCCCcEEEEEEe
Confidence            566777776642110 0 0122578999999988777788999999988877776     357899999999987654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.13  E-value=0.049  Score=46.70  Aligned_cols=78  Identities=21%  Similarity=0.272  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhCch-hhhcCCCCeEEEeccCCCC--CCCCCceeEEEeccc-----cccCChHHHHHHHHHhccCCcEEE
Q 024162           16 VSAVLNAIRDLGDE-AVEQCDPQIITQASSLSQL--PVESFSIDTVLSISS-----SHELPGDQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        16 s~~mv~~ar~~~~~-~~~~~~~~v~~~~~d~e~l--p~~~~sfD~V~s~~~-----l~~~~~~~~L~ei~RvLKPGG~l~   87 (271)
                      .+.+++++++.... .....++++..+.+|+...  ...++.||+|+.-..     ...+...++++.+.|.|+|||.++
T Consensus       113 D~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v  192 (290)
T d1xj5a_         113 DKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVC  192 (290)
T ss_dssp             CHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEE
T ss_pred             CHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEE
Confidence            57788888886421 1123567888888886432  234568999997221     223334899999999999999999


Q ss_pred             EEecCC
Q 024162           88 IYKKLT   93 (271)
Q Consensus        88 i~~~~~   93 (271)
                      ++....
T Consensus       193 ~q~~s~  198 (290)
T d1xj5a_         193 TQAESL  198 (290)
T ss_dssp             EECCCT
T ss_pred             EecCCc
Confidence            987553

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=95.10  E-value=0.015  Score=50.61  Aligned_cols=75  Identities=12%  Similarity=0.074  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC----CCCCCCceeEEEeccccc-----cC----Ch-HHHHHHHHHhcc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ----LPVESFSIDTVLSISSSH-----EL----PG-DQLLEEISRVLK   81 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~----lp~~~~sfD~V~s~~~l~-----~~----~~-~~~L~ei~RvLK   81 (271)
                      ++.+++.+++.....   .-.++.++++++.+    ++.....||+|++-....     ..    .. ..++..+.++||
T Consensus       176 s~~al~~a~~n~~~n---gl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLk  252 (318)
T d1wxxa2         176 SAEALRRAEENARLN---GLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLK  252 (318)
T ss_dssp             CHHHHHHHHHHHHHT---TCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEE
T ss_pred             hHHHHHHHHHHHHHc---CCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcC
Confidence            567777777653211   11358888888754    345567999999843211     11    11 467888999999


Q ss_pred             CCcEEEEEecCC
Q 024162           82 PGGTILIYKKLT   93 (271)
Q Consensus        82 PGG~l~i~~~~~   93 (271)
                      |||.|++.....
T Consensus       253 pGG~Lv~~scs~  264 (318)
T d1wxxa2         253 EGGILATASCSH  264 (318)
T ss_dssp             EEEEEEEEECCT
T ss_pred             CCCEEEEEeCCc
Confidence            999999987654

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.05  E-value=0.03  Score=47.67  Aligned_cols=77  Identities=10%  Similarity=0.061  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHhCch--hh-----hcCCCCeEEEeccCCCCCCCCCceeEEEeccc-----cccCChHHHHHHHHHhccCC
Q 024162           16 VSAVLNAIRDLGDE--AV-----EQCDPQIITQASSLSQLPVESFSIDTVLSISS-----SHELPGDQLLEEISRVLKPG   83 (271)
Q Consensus        16 s~~mv~~ar~~~~~--~~-----~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~-----l~~~~~~~~L~ei~RvLKPG   83 (271)
                      .+.|++++|+...-  ..     ...++++..+.+|+...--....||+|+.-..     ...+...++++.+.+.|+||
T Consensus       104 D~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~  183 (276)
T d1mjfa_         104 DEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP  183 (276)
T ss_dssp             CHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE
T ss_pred             CHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCC
Confidence            67889999976311  10     12457788888887543224578999997221     12223378999999999999


Q ss_pred             cEEEEEecC
Q 024162           84 GTILIYKKL   92 (271)
Q Consensus        84 G~l~i~~~~   92 (271)
                      |.++++...
T Consensus       184 Gv~v~q~~s  192 (276)
T d1mjfa_         184 GIYVTQAGS  192 (276)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEEEecCC
Confidence            999987644

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.92  E-value=0.04  Score=47.74  Aligned_cols=76  Identities=9%  Similarity=0.029  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC----CCCCCCceeEEEeccccccCC---------h-HHHHHHHHHhcc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ----LPVESFSIDTVLSISSSHELP---------G-DQLLEEISRVLK   81 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~----lp~~~~sfD~V~s~~~l~~~~---------~-~~~L~ei~RvLK   81 (271)
                      ++.+++.+++.....  ....++.++++|+..    ++.....||+|++........         . ..++....++||
T Consensus       177 s~~al~~a~~N~~~n--gl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~  254 (324)
T d2as0a2         177 SPRAIETAKENAKLN--GVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVK  254 (324)
T ss_dssp             CHHHHHHHHHHHHHT--TCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEE
T ss_pred             CHHHHHHHHHHHHHc--CCCccceeeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            456666666653111  112367888988753    344567999999843211111         1 457788899999


Q ss_pred             CCcEEEEEecCC
Q 024162           82 PGGTILIYKKLT   93 (271)
Q Consensus        82 PGG~l~i~~~~~   93 (271)
                      |||+|+++....
T Consensus       255 pGG~lv~~s~s~  266 (324)
T d2as0a2         255 DGGILVTCSCSQ  266 (324)
T ss_dssp             EEEEEEEEECCT
T ss_pred             CCcEEEEEeCCc
Confidence            999999988664

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=94.56  E-value=0.027  Score=46.77  Aligned_cols=55  Identities=13%  Similarity=0.221  Sum_probs=43.6

Q ss_pred             CCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162           35 DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        35 ~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      ..++.++.+|+.. ++|.  .|+++....+|.+++   ..+|++++++|+|||+++|.+..
T Consensus       123 ~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~  180 (243)
T d1kyza2         123 YPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI  180 (243)
T ss_dssp             CTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred             CCceEEecccccc-cCCC--cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEE
Confidence            3578999999853 4443  466777788888875   78999999999999999998753

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.048  Score=46.65  Aligned_cols=78  Identities=10%  Similarity=0.127  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHhCchh-hhcCCCCeEEEeccCCC-CCCCCCceeEEEeccc-----cccCChHHHHHHHHHhccCCcEEEE
Q 024162           16 VSAVLNAIRDLGDEA-VEQCDPQIITQASSLSQ-LPVESFSIDTVLSISS-----SHELPGDQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~~-~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~-----l~~~~~~~~L~ei~RvLKPGG~l~i   88 (271)
                      .+.|++++++..... ....++++..+.+|+.. +--..+.||+|+.-..     ...+...++++.+.|.|+|||.+++
T Consensus       111 D~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~  190 (285)
T d2o07a1         111 DEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCC  190 (285)
T ss_dssp             CHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEE
Confidence            578899998874211 12356788888888653 2334568999997321     1223347899999999999999999


Q ss_pred             EecCC
Q 024162           89 YKKLT   93 (271)
Q Consensus        89 ~~~~~   93 (271)
                      +....
T Consensus       191 q~~s~  195 (285)
T d2o07a1         191 QGECQ  195 (285)
T ss_dssp             EEECT
T ss_pred             eccch
Confidence            87654

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=94.14  E-value=0.056  Score=45.88  Aligned_cols=77  Identities=16%  Similarity=0.135  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhCch-hhhcCCCCeEEEeccCCC-CCCCCCceeEEEeccc-----cccCChHHHHHHHHHhccCCcEEEE
Q 024162           16 VSAVLNAIRDLGDE-AVEQCDPQIITQASSLSQ-LPVESFSIDTVLSISS-----SHELPGDQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~-~~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~-----l~~~~~~~~L~ei~RvLKPGG~l~i   88 (271)
                      .+.+++++++.... .....++++..+.+|+.. +.-..+.||+|+.-..     ...+...++++.+.+.|+|||.++.
T Consensus       108 D~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~  187 (274)
T d1iy9a_         108 DGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA  187 (274)
T ss_dssp             CHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEE
Confidence            56788888887421 112356788888888753 3334678999997321     1223358999999999999999998


Q ss_pred             EecC
Q 024162           89 YKKL   92 (271)
Q Consensus        89 ~~~~   92 (271)
                      +...
T Consensus       188 q~~s  191 (274)
T d1iy9a_         188 QTDN  191 (274)
T ss_dssp             ECCC
T ss_pred             ecCC
Confidence            8654

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.02  E-value=0.078  Score=44.53  Aligned_cols=76  Identities=9%  Similarity=0.049  Sum_probs=49.2

Q ss_pred             CCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCC
Q 024162           36 PQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF  115 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF  115 (271)
                      .++.+.++|+..++. .+.||.|++....   ....++.+..++|||||.+++......... .....+.+.+.....||
T Consensus       157 ~~v~~~~~D~~~~~~-~~~~D~Ii~~~p~---~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~-~~~~~e~~~~~~~~~g~  231 (260)
T d2frna1         157 DRMSAYNMDNRDFPG-ENIADRILMGYVV---RTHEFIPKALSIAKDGAIIHYHNTVPEKLM-PREPFETFKRITKEYGY  231 (260)
T ss_dssp             TTEEEECSCTTTCCC-CSCEEEEEECCCS---SGGGGHHHHHHHEEEEEEEEEEEEEEGGGT-TTTTHHHHHHHHHHTTC
T ss_pred             ceEEEEEcchHHhcc-CCCCCEEEECCCC---chHHHHHHHHhhcCCCCEEEEEeccccccc-hhhHHHHHHHHHHHcCC
Confidence            468889999988754 5789999875321   125678889999999999988765422110 00111234455666787


Q ss_pred             c
Q 024162          116 L  116 (271)
Q Consensus       116 ~  116 (271)
                      .
T Consensus       232 ~  232 (260)
T d2frna1         232 D  232 (260)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.34  E-value=0.03  Score=48.70  Aligned_cols=77  Identities=14%  Similarity=0.146  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhCch-hhhcCCCCeEEEeccCCCC-CCCCCceeEEEeccc-----cccCChHHHHHHHHHhccCCcEEEE
Q 024162           16 VSAVLNAIRDLGDE-AVEQCDPQIITQASSLSQL-PVESFSIDTVLSISS-----SHELPGDQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~-~~~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~-----l~~~~~~~~L~ei~RvLKPGG~l~i   88 (271)
                      .+.|++++++.... .....++++..+.+|+... .-....||+|+.-..     ..++...++++.+.|.|+|||.++.
T Consensus       139 D~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~  218 (312)
T d2b2ca1         139 DEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSS  218 (312)
T ss_dssp             CHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEE
T ss_pred             cHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEE
Confidence            56789999986321 1123557888888887533 234678999997321     2233348899999999999999999


Q ss_pred             EecC
Q 024162           89 YKKL   92 (271)
Q Consensus        89 ~~~~   92 (271)
                      +...
T Consensus       219 q~~s  222 (312)
T d2b2ca1         219 QGES  222 (312)
T ss_dssp             ECCC
T ss_pred             ecCC
Confidence            8644

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.32  E-value=0.054  Score=46.61  Aligned_cols=78  Identities=14%  Similarity=0.097  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHhCch-hhhcCCCCeEEEeccCCC-CCCCCCceeEEEeccc------cccCChHHHHHHHHHhccCCcEEE
Q 024162           16 VSAVLNAIRDLGDE-AVEQCDPQIITQASSLSQ-LPVESFSIDTVLSISS------SHELPGDQLLEEISRVLKPGGTIL   87 (271)
Q Consensus        16 s~~mv~~ar~~~~~-~~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~------l~~~~~~~~L~ei~RvLKPGG~l~   87 (271)
                      .+.|++++++.... .....++++..+.+|+.. +.-.+..||+|+.-..      ...+...++++.+.+.|+|||.++
T Consensus       122 Dp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v  201 (295)
T d1inla_         122 DGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFS  201 (295)
T ss_dssp             CHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEE
T ss_pred             CHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEE
Confidence            56788888886421 112346788888888753 3334678999997321      123345899999999999999999


Q ss_pred             EEecCC
Q 024162           88 IYKKLT   93 (271)
Q Consensus        88 i~~~~~   93 (271)
                      ++....
T Consensus       202 ~q~~sp  207 (295)
T d1inla_         202 AETEDP  207 (295)
T ss_dssp             EECCCT
T ss_pred             EecCCh
Confidence            886553

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.22  E-value=0.019  Score=51.85  Aligned_cols=37  Identities=22%  Similarity=0.180  Sum_probs=28.9

Q ss_pred             ceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 024162           54 SIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        54 sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .+|+|+..+ +++.++ ...|.+++|+|||||+|++.+.
T Consensus       297 ~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~  334 (406)
T d1u2za_         297 QCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKS  334 (406)
T ss_dssp             GCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             cceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence            567888654 345555 8899999999999999987653

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.88  E-value=0.072  Score=42.79  Aligned_cols=73  Identities=21%  Similarity=0.251  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-----CCCCCceeEEEecccc---------ccCCh-HHHHHHHHHhc
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-----PVESFSIDTVLSISSS---------HELPG-DQLLEEISRVL   80 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-----p~~~~sfD~V~s~~~l---------~~~~~-~~~L~ei~RvL   80 (271)
                      ...|++.++++...    ...++.+++++..++     .+..++||.|+.-...         ..+.. ...|...+++|
T Consensus        56 d~~~l~~a~~~l~~----~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~L  131 (192)
T d1m6ya2          56 DSEVLRIAEEKLKE----FSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLL  131 (192)
T ss_dssp             CHHHHHHHHHHTGG----GTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGE
T ss_pred             hHHHHHHHHHhhcc----ccccccchhHHHhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhc
Confidence            56788888887532    125788999887765     3556899999873321         12222 67899999999


Q ss_pred             cCCcEEEEEecC
Q 024162           81 KPGGTILIYKKL   92 (271)
Q Consensus        81 KPGG~l~i~~~~   92 (271)
                      +|||++.+.++.
T Consensus       132 k~gG~l~ii~f~  143 (192)
T d1m6ya2         132 NPGGRIVVISFH  143 (192)
T ss_dssp             EEEEEEEEEESS
T ss_pred             CCCCeeeeeccc
Confidence            999999998876

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.81  E-value=0.045  Score=44.64  Aligned_cols=73  Identities=15%  Similarity=0.111  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC------CCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL------PVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY   89 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l------p~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~   89 (271)
                      .+.+.+.+++.....  ....+|+++.++..++      .+....||+|+.-...........+.+..+.|||||.+++-
T Consensus        90 ~~~~~~~a~~~~~~~--gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~D  167 (214)
T d2cl5a1          90 NPDYAAITQQMLNFA--GLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLAD  167 (214)
T ss_dssp             CHHHHHHHHHHHHHH--TCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred             cHHHHHHHHHHHHHc--CCCccceeeeccccccccchhhcccccccceeeecccccccccHHHHHHHhCccCCCcEEEEe
Confidence            456667776653211  1224689999987643      24567899999753221112234577888999999987764


Q ss_pred             e
Q 024162           90 K   90 (271)
Q Consensus        90 ~   90 (271)
                      +
T Consensus       168 d  168 (214)
T d2cl5a1         168 N  168 (214)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=92.65  E-value=0.049  Score=47.14  Aligned_cols=76  Identities=13%  Similarity=0.092  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhCch--hhhcCCCCeEEEeccCCCC-CCCCCceeEEEeccc--c------ccCChHHHHHHHHHhccCCc
Q 024162           16 VSAVLNAIRDLGDE--AVEQCDPQIITQASSLSQL-PVESFSIDTVLSISS--S------HELPGDQLLEEISRVLKPGG   84 (271)
Q Consensus        16 s~~mv~~ar~~~~~--~~~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~--l------~~~~~~~~L~ei~RvLKPGG   84 (271)
                      .+.+++++++....  .....++++..+.+|+... .-.+..||+|+.-..  .      ..+...++++.+.|.|+|||
T Consensus       110 D~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G  189 (312)
T d1uira_         110 DGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGG  189 (312)
T ss_dssp             CHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEE
T ss_pred             CHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCc
Confidence            56788888886421  1123457788888888643 334568999996321  1      12334789999999999999


Q ss_pred             EEEEEec
Q 024162           85 TILIYKK   91 (271)
Q Consensus        85 ~l~i~~~   91 (271)
                      .|+++..
T Consensus       190 vlv~~~~  196 (312)
T d1uira_         190 VMGMQTG  196 (312)
T ss_dssp             EEEEEEE
T ss_pred             eEEEecC
Confidence            9988754

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=91.95  E-value=0.19  Score=43.29  Aligned_cols=58  Identities=10%  Similarity=0.129  Sum_probs=40.2

Q ss_pred             CCeEEEeccCCCC----CCCCCceeEEEeccc---c--ccCC----h-HHHHHHHHHhccCCcEEEEEecCC
Q 024162           36 PQIITQASSLSQL----PVESFSIDTVLSISS---S--HELP----G-DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        36 ~~v~~~~~d~e~l----p~~~~sfD~V~s~~~---l--~~~~----~-~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      .++.++++|+...    .-....||+|+.--.   .  ....    + ..++....++|+|||.|+++....
T Consensus       195 ~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~  266 (317)
T d2b78a2         195 ANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  266 (317)
T ss_dssp             TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             cceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            4688999988432    234568999997321   0  1111    2 568888999999999999988654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.57  E-value=0.11  Score=42.59  Aligned_cols=53  Identities=19%  Similarity=0.253  Sum_probs=36.5

Q ss_pred             EEEeccCCCC--CCCCCceeEEEecccc----c-------cCCh-HHHHHHHHHhccCCcEEEEEec
Q 024162           39 ITQASSLSQL--PVESFSIDTVLSISSS----H-------ELPG-DQLLEEISRVLKPGGTILIYKK   91 (271)
Q Consensus        39 ~~~~~d~e~l--p~~~~sfD~V~s~~~l----~-------~~~~-~~~L~ei~RvLKPGG~l~i~~~   91 (271)
                      .|+++|--++  .++++|+|+|+..-..    .       ++.. ...+.+++|+|||+|.+++...
T Consensus         6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~   72 (279)
T d1eg2a_           6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG   72 (279)
T ss_dssp             EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence            4566654332  4779999999984321    1       1111 6778999999999999998754

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=88.30  E-value=0.31  Score=39.11  Aligned_cols=61  Identities=13%  Similarity=0.191  Sum_probs=39.0

Q ss_pred             CCCCceeEEEeccccc-------cCC------h--HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcC
Q 024162           50 VESFSIDTVLSISSSH-------ELP------G--DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG  114 (271)
Q Consensus        50 ~~~~sfD~V~s~~~l~-------~~~------~--~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laG  114 (271)
                      ++++|+|+|+..-...       ...      .  ...+.+++|+|+|||.+++....        .....+...+...|
T Consensus        19 lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~--------~~~~~~~~~~~~~g   90 (256)
T d1g60a_          19 VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP--------FNCAFICQYLVSKG   90 (256)
T ss_dssp             SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH--------HHHHHHHHHHHHTT
T ss_pred             CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc--------hhhhhhhhhhhccc
Confidence            6688999999843211       011      1  45788999999999998765421        11224445667788


Q ss_pred             Ccch
Q 024162          115 FLDA  118 (271)
Q Consensus       115 F~~v  118 (271)
                      |...
T Consensus        91 ~~~~   94 (256)
T d1g60a_          91 MIFQ   94 (256)
T ss_dssp             CEEE
T ss_pred             ceee
Confidence            8654

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=88.27  E-value=1.5  Score=35.89  Aligned_cols=75  Identities=13%  Similarity=0.011  Sum_probs=51.2

Q ss_pred             CCeEEEeccCCCCCCC---CCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHH
Q 024162           36 PQIITQASSLSQLPVE---SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLL  112 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~---~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~l  112 (271)
                      .++..+.+++|.+...   .++||+|++-.+.   +-..++.-..+.+++||++++.-... ...++    +.....+..
T Consensus       120 ~n~~i~~~R~E~~~~~~~~~~~~D~v~sRAva---~l~~ll~~~~~~l~~~g~~i~~KG~~-~~~El----~~a~~~~~~  191 (239)
T d1xdza_         120 ENTTFCHDRAETFGQRKDVRESYDIVTARAVA---RLSVLSELCLPLVKKNGLFVALKAAS-AEEEL----NAGKKAITT  191 (239)
T ss_dssp             SSEEEEESCHHHHTTCTTTTTCEEEEEEECCS---CHHHHHHHHGGGEEEEEEEEEEECC--CHHHH----HHHHHHHHH
T ss_pred             CCcEEEeehhhhccccccccccceEEEEhhhh---CHHHHHHHHhhhcccCCEEEEECCCC-hHHHH----HHHHHHHHH
Confidence            4577788888876532   4689999996421   23778888999999999999887542 22222    344556777


Q ss_pred             cCCcch
Q 024162          113 AGFLDA  118 (271)
Q Consensus       113 aGF~~v  118 (271)
                      .|+.-.
T Consensus       192 ~~~~~~  197 (239)
T d1xdza_         192 LGGELE  197 (239)
T ss_dssp             TTEEEE
T ss_pred             cCCEEE
Confidence            777643

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=87.32  E-value=0.48  Score=40.49  Aligned_cols=83  Identities=23%  Similarity=0.193  Sum_probs=55.0

Q ss_pred             cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEec--cc----------ccc-CC--
Q 024162            4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI--SS----------SHE-LP--   68 (271)
Q Consensus         4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~--~~----------l~~-~~--   68 (271)
                      +.++..|....-...+...++..+   .    .++.....+...++.....||.|+.=  ++          ..| +.  
T Consensus       142 ~~i~a~d~~~~r~~~l~~~~~r~~---~----~~i~~~~~d~~~~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~  214 (313)
T d1ixka_         142 GVIYAFDVDENRLRETRLNLSRLG---V----LNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMD  214 (313)
T ss_dssp             SEEEEECSCHHHHHHHHHHHHHHT---C----CSEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHH
T ss_pred             cceeeeccCHHHHHHHHHHHHHHH---h----hccccccccccccccccccccEEEEccccccCCceeeccchhhhhhhh
Confidence            456667776655666665555554   1    45677777777777778899999971  10          111 11  


Q ss_pred             ------h--HHHHHHHHHhccCCcEEEEEecCC
Q 024162           69 ------G--DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        69 ------~--~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                            .  .++|...++.|||||+|+.++-+-
T Consensus       215 ~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         215 DIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence                  1  456788899999999999998654

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.11  E-value=0.64  Score=37.60  Aligned_cols=72  Identities=18%  Similarity=0.218  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CC-----CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEE
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LP-----VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp-----~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i   88 (271)
                      .+.+.+.||+.....  ....++.++.+++.+ ++     ...++||+|+.-..-   .. ...+..+.+.|+|||.+++
T Consensus        93 ~~~~~~~A~~~~~~a--g~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~  167 (219)
T d2avda1          93 DAQPPELGRPLWRQA--EAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAV  167 (219)
T ss_dssp             CSHHHHHHHHHHHHT--TCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEE
T ss_pred             chhHHHHHHHHHHhc--CccceEEEEEeehhhcchhhhhhcccCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEE
Confidence            345666666653211  123568889888643 22     346789999985321   22 6778899999999999999


Q ss_pred             EecC
Q 024162           89 YKKL   92 (271)
Q Consensus        89 ~~~~   92 (271)
                      -+..
T Consensus       168 Dn~l  171 (219)
T d2avda1         168 LRVL  171 (219)
T ss_dssp             ECCS
T ss_pred             eCCc
Confidence            7754

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=85.93  E-value=0.22  Score=37.78  Aligned_cols=75  Identities=8%  Similarity=-0.035  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CCCCCCceeEEEeccccccCChHHHHHHHH--HhccCCcEEEEEecC
Q 024162           16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEIS--RVLKPGGTILIYKKL   92 (271)
Q Consensus        16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~--RvLKPGG~l~i~~~~   92 (271)
                      ...+++.+++.....  ....++.++++|+.. ++....+||+|++--.+..-.....+..+.  +.|+|||.+++....
T Consensus        46 ~~~a~~~~~~n~~~~--~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          46 NRKAQAIIQDNIIMT--KAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             CHHHHHHHHHHHHTT--TCGGGEEEECSCHHHHHHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             chhhhhhhhhhhhhc--ccccchhhhcccccccccccccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            345555555542110  112458888888875 456678999999854322111155566554  679999999986543

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=85.13  E-value=1.8  Score=37.70  Aligned_cols=80  Identities=11%  Similarity=0.126  Sum_probs=53.7

Q ss_pred             ccCCCCCCCCCceeEEEeccccccCCh----------------------------------HHHHHHHHHhccCCcEEEE
Q 024162           43 SSLSQLPVESFSIDTVLSISSSHELPG----------------------------------DQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        43 ~d~e~lp~~~~sfD~V~s~~~l~~~~~----------------------------------~~~L~ei~RvLKPGG~l~i   88 (271)
                      ++.-.==||++|.++++|++++||+..                                  ..+|+.=++-|+|||++++
T Consensus       128 GSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl  207 (359)
T d1m6ex_         128 GSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL  207 (359)
T ss_dssp             SCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred             CchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence            444333489999999999999999731                                  1366666788999999999


Q ss_pred             EecCCCCc-------ccHHHHHHHHHHHHHHcCCcchhhhh
Q 024162           89 YKKLTSDK-------GDVDKAISALEGKLLLAGFLDAQRIQ  122 (271)
Q Consensus        89 ~~~~~~~~-------~e~~~~~~~l~~~l~laGF~~v~~~~  122 (271)
                      +..+....       ..+-.........+...|.++.+.+.
T Consensus       208 ~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~d  248 (359)
T d1m6ex_         208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMD  248 (359)
T ss_dssp             EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTG
T ss_pred             EEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            87654210       01112233445678888998866654

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=82.66  E-value=1.8  Score=34.53  Aligned_cols=53  Identities=15%  Similarity=0.138  Sum_probs=41.6

Q ss_pred             CCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162           36 PQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   92 (271)
Q Consensus        36 ~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~   92 (271)
                      .++..+.++++++.. ..+||+|++...   .+-..++.-..+.++++|++++.-..
T Consensus       115 ~nv~v~~~R~E~~~~-~~~fD~V~sRA~---~~~~~ll~~~~~~l~~~g~~~~~KG~  167 (207)
T d1jsxa_         115 ENIEPVQSRVEEFPS-EPPFDGVISRAF---ASLNDMVSWCHHLPGEQGRFYALKGQ  167 (207)
T ss_dssp             SSEEEEECCTTTSCC-CSCEEEEECSCS---SSHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred             cceeeeccchhhhcc-ccccceehhhhh---cCHHHHHHHHHHhcCCCcEEEEECCC
Confidence            468889999998753 568999998653   12367888889999999999988754

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.39  E-value=1.8  Score=36.12  Aligned_cols=86  Identities=17%  Similarity=0.146  Sum_probs=53.8

Q ss_pred             CCccEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-CCCCCceeEEEec--c-c---c--------c
Q 024162            1 MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-PVESFSIDTVLSI--S-S---S--------H   65 (271)
Q Consensus         1 ~~~~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~--~-~---l--------~   65 (271)
                      |..+-+++.|....=...+.+.++..+.       .++.....+.... ......||.|+.=  + .   +        .
T Consensus       124 ~~~~~i~a~d~~~~R~~~l~~~~~r~g~-------~~~~~~~~~~~~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~  196 (284)
T d1sqga2         124 APEAQVVAVDIDEQRLSRVYDNLKRLGM-------KATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWL  196 (284)
T ss_dssp             CTTCEEEEEESSTTTHHHHHHHHHHTTC-------CCEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHH
T ss_pred             hhhhhhhhhhcchhhhhhHhhhhhcccc-------cceeeeccccccchhcccccccEEEEeccccccCccccccchhhc
Confidence            3456678888888778888887776651       2233333332222 2345689999971  1 0   1        1


Q ss_pred             cCC-------h--HHHHHHHHHhccCCcEEEEEecCC
Q 024162           66 ELP-------G--DQLLEEISRVLKPGGTILIYKKLT   93 (271)
Q Consensus        66 ~~~-------~--~~~L~ei~RvLKPGG~l~i~~~~~   93 (271)
                      +.+       .  ..+|....+.|||||+|+.++=+-
T Consensus       197 ~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~  233 (284)
T d1sqga2         197 RRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  233 (284)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence            111       1  457888899999999999998653

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=80.65  E-value=1.5  Score=35.60  Aligned_cols=70  Identities=13%  Similarity=0.028  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-C------CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEE
Q 024162           17 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-P------VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI   88 (271)
Q Consensus        17 ~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p------~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i   88 (271)
                      +...+.|++.....  ....+|.++.+++... +      ...++||+|+.-..-   .. ...+..+.+.|+|||.+++
T Consensus        94 ~~~~~~A~~~~~~~--g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa~k---~~y~~~~e~~~~ll~~gGiii~  168 (227)
T d1susa1          94 KENYELGLPVIKKA--GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADK---DNYLNYHKRLIDLVKVGGVIGY  168 (227)
T ss_dssp             CHHHHHHHHHHHHT--TCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEEEECSCS---TTHHHHHHHHHHHBCTTCCEEE
T ss_pred             chhHHHHHHHHHHh--ccccceeeeehHHHHHHHHHHhccccCCceeEEEeccch---hhhHHHHHHHHhhcCCCcEEEE
Confidence            34555666553211  1224688888887533 2      135689999984321   22 6788889999999999998


Q ss_pred             Eec
Q 024162           89 YKK   91 (271)
Q Consensus        89 ~~~   91 (271)
                      -+.
T Consensus       169 DNv  171 (227)
T d1susa1         169 DNT  171 (227)
T ss_dssp             ETT
T ss_pred             ccC
Confidence            764