Citrus Sinensis ID: 024165

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MRPEDIDHYMSFQFQCMFFGLFKNIAVIRQSTWAWDNLWHFLYCLPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
Secondary Structure (PSIPRED)
cccccccccccccHHcccccccHHHHHHHHccccccccHHHHcccccEEEEEccccHHHHHHHHHcccccEEEEcccccHHHHHHHHHHccccEEEEEEEccccccEEEEEEcccccEEEEEEEEEEEcccccccccccccccEEEEcccccccHHHHHHHccccccccccccccEEEEEEEcccEEEEEEEEEEEEEccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEEcccccccccEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHcHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHccccccEEEEEccccHHHHHHHHHHccccHHEcccccEHHHHHHHHHHccccEEEEEEcccccccEEEEEEcccccEEEEEEEEEEEEccccccccccccccEEEEccccccHHHHHHHHHHHHccccccccccEEEEEEccccEEEEEEEEEEEEcccEEccccccccccccccccccccccEEEEEEccccEEEEEEEEEccccccccccEEEEEccccccHHHHHcc
Coil and Loop (DISEMBL)
MRPEDIDHYMSFQFQCMFFGLFKNIAVIRQSTWAWDNLWHFLYCLPVYMLFILQRGPAFISELLsvipnshyykrgtYDLKKIIEYAKKKDFTSIIVVHTnrrepdalliiglpdgptahfKLSKLVLRKDiknhgnptghipeLVLNNFATRLGHRVGRLIqslfpqspefrgrrvvtfhnqrdfiffRHHRYIfetkeskgsdangkkakdaksekTSQQKVITRLQECGPRFTLKLVSLQhgtfdtkggefewvhkpemdtsrrrffl
Flexible Loop (DISEMBL)
MRPEDIDHYMSFQFQCMFFGLFKNIAVIRQSTWAWDNLWHFLYCLPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLiiglpdgptAHFKLSKLVLRKDIKNhgnptghipeLVLNNFATRLGHRVGRLIQslfpqspefrgrRVVTFHNQRDFIFFRHHRYIFetkeskgsdangkkakdaksektsqqKVITRLQECGPRFTLKLVSLQHgtfdtkggefewvhkpemdtsrrrffl
Low Complexity Region (SEG)
MRPEDIDHYMSFQFQCMFFGLFKNIAVIRQSTWAWDNLWHFLYCLPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
Disordered region (IsUnstruct)
*****IDHYMSFQFQCMFFGLFKNIAVIRQSTWAWDNLWHFLYCLPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFE**************************VITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVH*************
Disordered Region (DISOPRED)
************QF*CMFFGLFKNIAVIRQSTWAWDNLWHFLYCLPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKN*GNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETK******************************ECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDT****FFL
Disordered Region (DISEMBL)
MRPEDIDHYMSFQFQCMFFGLFKNIAVIRQSTWAWDNLWHFLYCLPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETK************************VITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
Disordered Region (DISPRO)
*RPEDIDHYMSFQFQCMFFGLFKNIAVIRQSTWAWDNLWHFLYCLPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESK********************KVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSR*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRPEDIDHYMSFQFQCMFFGLFKNIAVIRQSTWAWDNLWHFLYCLPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
Q5R631	349	Ribosome production facto	yes	no	0.697	0.541	0.539	9e-59
Q9H9Y2	349	Ribosome production facto	yes	no	0.697	0.541	0.539	1e-58
Q7TND5	349	Ribosome production facto	yes	no	0.697	0.541	0.530	3e-58
Q8AVP1	343	Ribosome production facto	N/A	no	0.712	0.562	0.506	7e-56
P54073	384	Brix domain-containing pr	yes	no	0.701	0.494	0.509	3e-55
Q6IQU6	330	Ribosome production facto	yes	no	0.697	0.572	0.506	2e-54
Q5RJS9	345	Ribosome production facto	yes	no	0.653	0.513	0.514	6e-54
Q9VKB4	394	Probable ribosome product	yes	no	0.690	0.474	0.511	2e-50
P38805	295	Ribosome production facto	yes	no	0.682	0.627	0.453	8e-47
O14180	306	Brix domain-containing pr	yes	no	0.719	0.637	0.443	3e-44

>sp|Q5R631|RPF1_PONAB Ribosome production factor 1 OS=Pongo abelii GN=RPF1 PE=2 SV=1

 Score =  226 bits (577), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 116/215 (53%), Positives = 147/215 (68%), Gaps = 26/215 (12%)

Query: 59  FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
              +L +VIPNSH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPT
Sbjct: 159 LCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPT 218

Query: 119 AHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
           AHFK+S + LRK+IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V
Sbjct: 219 AHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQV 278

Query: 178 VTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 237
            TFHNQRD+IFFR HRYIF +++  G                        +QE GPRFTL
Sbjct: 279 ATFHNQRDYIFFRFHRYIFRSEKKVG------------------------IQELGPRFTL 314

Query: 238 KLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
           KL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 315 KLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349

May be required for ribosome biogenesis.
Pongo abelii (taxid: 9601)

>sp|Q9H9Y2|RPF1_HUMAN Ribosome production factor 1 OS=Homo sapiens GN=RPF1 PE=1 SV=2

 Score =  226 bits (577), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 116/215 (53%), Positives = 147/215 (68%), Gaps = 26/215 (12%)

Query: 59  FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
              +L +VIPNSH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPT
Sbjct: 159 LCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPT 218

Query: 119 AHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
           AHFK+S + LRK+IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V
Sbjct: 219 AHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQV 278

Query: 178 VTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 237
            TFHNQRD+IFFR HRYIF +++  G                        +QE GPRFTL
Sbjct: 279 ATFHNQRDYIFFRFHRYIFRSEKKVG------------------------IQELGPRFTL 314

Query: 238 KLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
           KL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 315 KLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349

May be required for ribosome biogenesis.

Homo sapiens (taxid: 9606)

>sp|Q7TND5|RPF1_MOUSE Ribosome production factor 1 OS=Mus musculus GN=Rpf1 PE=2 SV=2

 Score =  225 bits (573), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 114/215 (53%), Positives = 148/215 (68%), Gaps = 26/215 (12%)

Query: 59  FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
              +L +VIP+SH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPT
Sbjct: 159 LCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPT 218

Query: 119 AHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
           AHFK+S + LRK+IK  G +PT H+PE++LNNF TRLGH +GR+  SLFP +P+F GR+V
Sbjct: 219 AHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQV 278

Query: 178 VTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 237
            TFHNQRD+IFFR HRYIF++++  G                        +QE GPRFTL
Sbjct: 279 ATFHNQRDYIFFRFHRYIFKSEKKVG------------------------IQELGPRFTL 314

Query: 238 KLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
           KL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 315 KLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349

May be required for ribosome biogenesis.

Mus musculus (taxid: 10090)

>sp|Q8AVP1|RPF1_XENLA Ribosome production factor 1 OS=Xenopus laevis GN=rpf1 PE=2 SV=1

 Score =  217 bits (553), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 111/219 (50%), Positives = 145/219 (66%), Gaps = 26/219 (11%)

Query: 55  RGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLP 114
           R   F  +L S+IPNS  Y R    LKKII     +D+T ++V++ +R+ P+ L++  LP
Sbjct: 149 RSVRFTEQLSSIIPNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLP 208

Query: 115 DGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFR 173
           DGPTAHFK+S + LRK++K  G  PT H PE++LNNF TRLGH +GR+  SL+P  P F 
Sbjct: 209 DGPTAHFKISNVRLRKEMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFV 268

Query: 174 GRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGP 233
           GR+V TFHNQRD+IFFR+HRY+F++++  G                        +QE GP
Sbjct: 269 GRQVATFHNQRDYIFFRYHRYLFKSEKKVG------------------------IQELGP 304

Query: 234 RFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
           RFTLKL SLQ GTFD+K GE+EWVHK  EMDTSRR+F L
Sbjct: 305 RFTLKLRSLQKGTFDSKYGEYEWVHKRHEMDTSRRKFHL 343

May be required for ribosome biogenesis.

Xenopus laevis (taxid: 8355)

>sp|P54073|YUY1_CAEEL Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans GN=F44G4.1 PE=4 SV=4

 Score =  215 bits (547), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 109/214 (50%), Positives = 139/214 (64%), Gaps = 24/214 (11%)

Query: 59  FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
           F  EL   IPNS  + R    LK IIE AK+++FT ++VVH +R++P+ ++   LP+GPT
Sbjct: 194 FCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPT 253

Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
           A+FK++ L   +D+K  G  T H PE++LNNF TRLGH + R++  LFP  P+F GRRVV
Sbjct: 254 AYFKINSLTFTQDLKKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVV 313

Query: 179 TFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLK 238
           TFHNQRD+IFFRHHRY F+ + SK +                       L E GPRFTL+
Sbjct: 314 TFHNQRDYIFFRHHRYEFKKEGSKAA-----------------------LLELGPRFTLR 350

Query: 239 LVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
           L  LQ GTFD K GEFEWV K  EM+TSRRRFFL
Sbjct: 351 LKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 384

Caenorhabditis elegans (taxid: 6239)

>sp|Q6IQU6|RPF1_DANRE Ribosome production factor 1 OS=Danio rerio GN=rpf1 PE=2 SV=1

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/215 (50%), Positives = 144/215 (66%), Gaps = 26/215 (12%)

Query: 59  FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
           F  +L +VIP+++ Y R    LKK+I     + FT ++V++ +R+ P+ +++  LPDGPT
Sbjct: 140 FCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPT 199

Query: 119 AHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
           AHFK+S + LRK++K  G NPT H PE++LNNF TRLGH +GRL  +LFP  P+F GR+V
Sbjct: 200 AHFKVSSVRLRKEMKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQV 259

Query: 178 VTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 237
            TFHNQRDFIFFR HRYIF+ ++  G                        +QE GPRFTL
Sbjct: 260 ATFHNQRDFIFFRFHRYIFKNEKKVG------------------------IQELGPRFTL 295

Query: 238 KLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
           KL SLQ GTFD+K GE+EWVHK  EMD+SRR+F L
Sbjct: 296 KLRSLQKGTFDSKFGEYEWVHKRHEMDSSRRKFHL 330

May be required for ribosome biogenesis.

Danio rerio (taxid: 7955)

>sp|Q5RJS9|RPF1_RAT Ribosome production factor 1 OS=Rattus norvegicus GN=Rpf1 PE=2 SV=2

 Score =  211 bits (536), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 137/202 (67%), Gaps = 25/202 (12%)

Query: 59  FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
              +L +VIP+SH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPT
Sbjct: 159 LCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPT 218

Query: 119 AHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
           AHFK+S + LRK+IK  G +PT H+PE++LNNF TRLGH +GR+  SLFP +P+F GR+V
Sbjct: 219 AHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQV 278

Query: 178 VTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 237
            TFHNQRD+IFFR HRYIF++++  G                        +QE GPRFTL
Sbjct: 279 ATFHNQRDYIFFRFHRYIFKSEKKVG------------------------IQELGPRFTL 314

Query: 238 KLVSLQHGTFDTKGGEFEWVHK 259
           KL SLQ GTFD+K GE+EWVHK
Sbjct: 315 KLRSLQKGTFDSKYGEYEWVHK 336

May be required for ribosome biogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q9VKB4|RPF1_DROME Probable ribosome production factor 1 OS=Drosophila melanogaster GN=CG6712 PE=2 SV=1

 Score =  199 bits (506), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 109/213 (51%), Positives = 141/213 (66%), Gaps = 26/213 (12%)

Query: 62  ELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHF 121
           EL  + PN+    R    +KKI + A++++FT +++V+ +RR+P+ LL+I LP+GPTAHF
Sbjct: 205 ELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHF 264

Query: 122 KLSKLVLRKDIK-NHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTF 180
           KLS + L  DIK +H   T H PE++LNNF TRLG  VGR++ +LF   PEFRGRR VTF
Sbjct: 265 KLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTF 324

Query: 181 HNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLV 240
           HNQRD+IFFRHHRY F TKE       GK+ K               L+E GPRFTLKL 
Sbjct: 325 HNQRDYIFFRHHRYEF-TKE-------GKRVK---------------LRELGPRFTLKLR 361

Query: 241 SLQHGTFDTKGGEFEWV--HKPEMDTSRRRFFL 271
           SLQ GTFD+K G++ W+  +K     SRRRFFL
Sbjct: 362 SLQEGTFDSKTGDYAWIISNKRHAMESRRRFFL 394

May be required for ribosome biogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|P38805|RPF1_YEAST Ribosome production factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPF1 PE=1 SV=1

 Score =  187 bits (474), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 97/214 (45%), Positives = 131/214 (61%), Gaps = 29/214 (13%)

Query: 59  FISELLSVIPNSHYYKRG-TYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 117
           F + L+ ++PN  + KR   Y LK+I +   K++FT I++++ ++++   L  I LP+GP
Sbjct: 110 FANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGP 169

Query: 118 TAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
           T +FKLS  V  K I  HG PT HIPEL+LNNF TRLG  VGRL QS+ PQ+P+  GR+V
Sbjct: 170 TFYFKLSSFVEVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQV 229

Query: 178 VTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 237
           +T HNQRD+IFFR HRY+F+  E  G                        LQE GP+FTL
Sbjct: 230 ITLHNQRDYIFFRRHRYVFKDNERVG------------------------LQELGPQFTL 265

Query: 238 KLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
           KL  LQ G  +    E EW HKPEMD  +++F+L
Sbjct: 266 KLKRLQRGIKE----ETEWEHKPEMDKEKKKFYL 295

Essential protein. Required for biogenesis of the 60S ribosomal subunit.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O14180|YDS4_SCHPO Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4F8.04 PE=4 SV=1

 Score =  178 bits (452), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 95/214 (44%), Positives = 133/214 (62%), Gaps = 19/214 (8%)

Query: 59  FISELLSVIPNSHYYKR-GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 117
           F SELL   PN+ + KR G  ++ +I E A K+ +T ++V++ +R++ +AL ++ LP+GP
Sbjct: 111 FASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGP 170

Query: 118 TAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
           + +F LS L   K+I NHG  TGHIPEL++NNF+TRLG  V R  QSLF Q+P+ +GR+V
Sbjct: 171 SFYFTLSNLQTAKEISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQV 230

Query: 178 VTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 237
           VT H QRDF+FFR HRY F  K S   D  G                 T LQE GPRFT+
Sbjct: 231 VTIHCQRDFLFFRRHRYAFREK-SNMPDGIG-----------------TGLQELGPRFTM 272

Query: 238 KLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
           +L  +Q G +D K GE  +      ++ RR+F+L
Sbjct: 273 RLRMVQKGVWDRKEGEVFFESNAGEESDRRKFWL 306

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
359480784	346	PREDICTED: ribosome production factor 1-	0.815	0.638	0.868	1e-112
296082657	319	unnamed protein product [Vitis vinifera]	0.815	0.692	0.868	1e-112
363807176	354	uncharacterized protein LOC100785331 [Gl	0.800	0.612	0.884	1e-111
302143564	346	unnamed protein product [Vitis vinifera]	0.815	0.638	0.864	1e-111
359488064	801	PREDICTED: uncharacterized protein LOC10	0.800	0.270	0.875	1e-111
356559438	354	PREDICTED: LOW QUALITY PROTEIN: ribosome	0.800	0.612	0.880	1e-111
224130720	370	predicted protein [Populus trichocarpa]	0.815	0.597	0.850	1e-108
82621156	335	putative RNA processing factor 1-like [S	0.789	0.638	0.838	1e-107
224068234	361	predicted protein [Populus trichocarpa]	0.815	0.612	0.873	1e-105
358346575	356	Ribosome production factor [Medicago tru	0.815	0.620	0.811	1e-103

>gi|359480784|ref|XP_002268541.2| PREDICTED: ribosome production factor 1-like [Vitis vinifera]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/221 (86%), Positives = 206/221 (93%)

Query: 51  FILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLI 110
           F   RGPAFISELLSVIPN+HYYKRGTYDLKKI+EYAKKKDFTS+IVVHTNRREPDALLI
Sbjct: 126 FNSTRGPAFISELLSVIPNAHYYKRGTYDLKKIVEYAKKKDFTSLIVVHTNRREPDALLI 185

Query: 111 IGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSP 170
           IGLPDGPTAHFKLSKLVLRKD+KNHGNPT HIPELVLNNF TRLGHR+GR+IQSLFPQ+P
Sbjct: 186 IGLPDGPTAHFKLSKLVLRKDVKNHGNPTSHIPELVLNNFTTRLGHRIGRMIQSLFPQAP 245

Query: 171 EFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQE 230
            F GRRVVTFHNQRDFIFFRHHRYIFE+KESK  D+ G K KDAK EK+S+ KV+ RLQE
Sbjct: 246 NFGGRRVVTFHNQRDFIFFRHHRYIFESKESKQGDSKGNKDKDAKGEKSSRGKVVARLQE 305

Query: 231 CGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
           CGPRFTLKL+SLQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 306 CGPRFTLKLISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082657|emb|CBI21662.3| unnamed protein product [Vitis vinifera]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/221 (86%), Positives = 206/221 (93%)

Query: 51  FILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLI 110
           F   RGPAFISELLSVIPN+HYYKRGTYDLKKI+EYAKKKDFTS+IVVHTNRREPDALLI
Sbjct: 99  FNSTRGPAFISELLSVIPNAHYYKRGTYDLKKIVEYAKKKDFTSLIVVHTNRREPDALLI 158

Query: 111 IGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSP 170
           IGLPDGPTAHFKLSKLVLRKD+KNHGNPT HIPELVLNNF TRLGHR+GR+IQSLFPQ+P
Sbjct: 159 IGLPDGPTAHFKLSKLVLRKDVKNHGNPTSHIPELVLNNFTTRLGHRIGRMIQSLFPQAP 218

Query: 171 EFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQE 230
            F GRRVVTFHNQRDFIFFRHHRYIFE+KESK  D+ G K KDAK EK+S+ KV+ RLQE
Sbjct: 219 NFGGRRVVTFHNQRDFIFFRHHRYIFESKESKQGDSKGNKDKDAKGEKSSRGKVVARLQE 278

Query: 231 CGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
           CGPRFTLKL+SLQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 279 CGPRFTLKLISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807176|ref|NP_001242604.1| uncharacterized protein LOC100785331 [Glycine max] gi|255644450|gb|ACU22729.1| unknown [Glycine max]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/217 (88%), Positives = 204/217 (94%)

Query: 55  RGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLP 114
           RGPAFISELLSVIPN+HY+KRGTYDLKKI+EYAKKKDFTSIIVVHTNRREPDALLIIG+P
Sbjct: 138 RGPAFISELLSVIPNAHYFKRGTYDLKKIVEYAKKKDFTSIIVVHTNRREPDALLIIGVP 197

Query: 115 DGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRG 174
           DGPTAHFKLSKLVLRKDIKNHGNPTGH PELVLNNF TRLGHRVGRLIQSLFPQ PEF+G
Sbjct: 198 DGPTAHFKLSKLVLRKDIKNHGNPTGHKPELVLNNFTTRLGHRVGRLIQSLFPQDPEFKG 257

Query: 175 RRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPR 234
           RRVVTFHNQRDFIFFRHHRYIFETKE K +++ GKK KD +SE   +QK I RLQECGPR
Sbjct: 258 RRVVTFHNQRDFIFFRHHRYIFETKEVKKAESKGKKDKDGESENVPEQKTIARLQECGPR 317

Query: 235 FTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
           FTLKL+SLQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 318 FTLKLISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143564|emb|CBI22317.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/221 (86%), Positives = 204/221 (92%)

Query: 51  FILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLI 110
           F   RGPAFISELLSVIPN+HYYKRGTYDLKKI+EYAK KDFTS+IVVHTNRREPDALLI
Sbjct: 126 FNSTRGPAFISELLSVIPNAHYYKRGTYDLKKIVEYAKIKDFTSLIVVHTNRREPDALLI 185

Query: 111 IGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSP 170
           IGLPDGPTAHFKLSKLVL KD+KNHGNPT HIPELVLNNF TRLGHR+GR+IQSLFPQ+P
Sbjct: 186 IGLPDGPTAHFKLSKLVLHKDVKNHGNPTSHIPELVLNNFTTRLGHRIGRMIQSLFPQAP 245

Query: 171 EFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQE 230
            FRGRRVVTFHNQRDFIFFRHHRYIFE+KESK  D  G K KDAK EK+SQ KV+ RLQE
Sbjct: 246 NFRGRRVVTFHNQRDFIFFRHHRYIFESKESKQGDTKGNKDKDAKGEKSSQGKVVARLQE 305

Query: 231 CGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
           CGPRFTLKL++LQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 306 CGPRFTLKLINLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488064|ref|XP_003633697.1| PREDICTED: uncharacterized protein LOC100263155 [Vitis vinifera]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/217 (87%), Positives = 203/217 (93%)

Query: 55  RGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLP 114
           RGPAFISELLSVIPN+HYYKRGTYDLKKI+EYAK KDFTS+IVVHTNRREPDALLIIGLP
Sbjct: 585 RGPAFISELLSVIPNAHYYKRGTYDLKKIVEYAKIKDFTSLIVVHTNRREPDALLIIGLP 644

Query: 115 DGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRG 174
           DGPTAHFKLSKLVL KD+KNHGNPT HIPELVLNNF TRLGHR+GR+IQSLFPQ+P FRG
Sbjct: 645 DGPTAHFKLSKLVLHKDVKNHGNPTSHIPELVLNNFTTRLGHRIGRMIQSLFPQAPNFRG 704

Query: 175 RRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPR 234
           RRVVTFHNQRDFIFFRHHRYIFE+KESK  D  G K KDAK EK+SQ KV+ RLQECGPR
Sbjct: 705 RRVVTFHNQRDFIFFRHHRYIFESKESKQGDTKGNKDKDAKGEKSSQGKVVARLQECGPR 764

Query: 235 FTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
           FTLKL++LQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 765 FTLKLINLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 801

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559438|ref|XP_003548006.1| PREDICTED: LOW QUALITY PROTEIN: ribosome production factor 1-like [Glycine max]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/217 (88%), Positives = 204/217 (94%)

Query: 55  RGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLP 114
           RGPAFISELLSVIPN+HY+KRGTYDLKKI+EYAKKKDFTS+IVVHTNRREPDALLIIG+P
Sbjct: 138 RGPAFISELLSVIPNAHYFKRGTYDLKKIVEYAKKKDFTSVIVVHTNRREPDALLIIGVP 197

Query: 115 DGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRG 174
           DGPTAHFKLSKLVLRKDIKNHGNPTGH PELVLNNF TRLGHRVGRLIQSLFPQ PEF+G
Sbjct: 198 DGPTAHFKLSKLVLRKDIKNHGNPTGHKPELVLNNFTTRLGHRVGRLIQSLFPQDPEFKG 257

Query: 175 RRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPR 234
           RRVVTFHNQRDFIFFRHHRYIFETKE K +++ GKK K+ KSE   +QK I RLQECGPR
Sbjct: 258 RRVVTFHNQRDFIFFRHHRYIFETKEVKKTESKGKKDKEGKSENVPEQKTIARLQECGPR 317

Query: 235 FTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
           FTLKL+SLQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 318 FTLKLISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130720|ref|XP_002320911.1| predicted protein [Populus trichocarpa] gi|222861684|gb|EEE99226.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/221 (85%), Positives = 199/221 (90%)

Query: 51  FILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLI 110
           F   RGPAFISELL VIPN+HYYKRGTYDLKKI+EYAKK+DFTS+IVVHTNRREPD LLI
Sbjct: 150 FNSTRGPAFISELLEVIPNAHYYKRGTYDLKKIVEYAKKQDFTSLIVVHTNRREPDGLLI 209

Query: 111 IGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSP 170
           IGLPDGPTAHFKLS+LVLRKDIK+HGNPT H PELVL NF T LGHR+GRLIQSLFPQ P
Sbjct: 210 IGLPDGPTAHFKLSRLVLRKDIKSHGNPTSHEPELVLTNFTTCLGHRIGRLIQSLFPQEP 269

Query: 171 EFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQE 230
            FRGRRVVTFHNQRD+IFFRHHRYIFETKESK SD+ GK  KD K EK +QQKVI RLQE
Sbjct: 270 NFRGRRVVTFHNQRDYIFFRHHRYIFETKESKQSDSKGKNRKDGKGEKNTQQKVIARLQE 329

Query: 231 CGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
           CGPRFTLKL SLQH TFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 330 CGPRFTLKLRSLQHETFDTKGGEYEWVHKPEMDTSRRRFFL 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82621156|gb|ABB86266.1| putative RNA processing factor 1-like [Solanum tuberosum]

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 182/217 (83%), Positives = 200/217 (92%), Gaps = 3/217 (1%)

Query: 55  RGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLP 114
           RGPAFIS+L+SVIPN+HYYKRGTYDLKKI++YA +K+FTS+IVVHTNRREPDALL+IGLP
Sbjct: 122 RGPAFISDLISVIPNAHYYKRGTYDLKKIVQYANEKEFTSVIVVHTNRREPDALLVIGLP 181

Query: 115 DGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRG 174
           DGPTAHFKLSKL+LRKDIKNHG PT H PELVL NF TRLGHRVGR+IQSLFPQ PEFRG
Sbjct: 182 DGPTAHFKLSKLMLRKDIKNHGKPTSHKPELVLTNFTTRLGHRVGRMIQSLFPQDPEFRG 241

Query: 175 RRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPR 234
           RRVVTFHNQRDFIFFRHHRYIFETKESK  ++ GKK+KD   EK  Q++ I RLQECGPR
Sbjct: 242 RRVVTFHNQRDFIFFRHHRYIFETKESKQKESKGKKSKD---EKNPQERTIARLQECGPR 298

Query: 235 FTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
           FTLKL+SLQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 299 FTLKLISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 335

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068234|ref|XP_002302686.1| predicted protein [Populus trichocarpa] gi|222844412|gb|EEE81959.1| predicted protein [Populus trichocarpa]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/221 (87%), Positives = 202/221 (91%)

Query: 51  FILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLI 110
           F   RGPAFISELL VIPN+HYYKRGTYDLKKI+EYAKK+DFTS+IVVHTNRREPDALLI
Sbjct: 141 FNSTRGPAFISELLQVIPNAHYYKRGTYDLKKIVEYAKKQDFTSLIVVHTNRREPDALLI 200

Query: 111 IGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSP 170
           IGLPDGPTAHFKLS+LVLRKDIKNHGNPT H PELVL NF TRLGHR GR+IQSLFPQ P
Sbjct: 201 IGLPDGPTAHFKLSRLVLRKDIKNHGNPTSHEPELVLTNFTTRLGHRAGRIIQSLFPQEP 260

Query: 171 EFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQE 230
            FRGRRVVTFHNQRD+IFFRHHRYIFETKESK SD+ GKK KD K EK SQQKVI RLQE
Sbjct: 261 NFRGRRVVTFHNQRDYIFFRHHRYIFETKESKQSDSKGKKGKDGKGEKISQQKVIARLQE 320

Query: 231 CGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
           CGPRFTLKL SLQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 321 CGPRFTLKLRSLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346575|ref|XP_003637342.1| Ribosome production factor [Medicago truncatula] gi|355503277|gb|AES84480.1| Ribosome production factor [Medicago truncatula]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/223 (81%), Positives = 195/223 (87%), Gaps = 2/223 (0%)

Query: 51  FILQRGPAFISELLSVIPNSHYYKRGTYDLKK--IIEYAKKKDFTSIIVVHTNRREPDAL 108
           F   RGPA ISELL VIPN+HY+KRGTYDLKK  I+EYA KKDFTS++VVHTNRREP+AL
Sbjct: 134 FNSTRGPALISELLQVIPNAHYFKRGTYDLKKVMIVEYANKKDFTSLVVVHTNRREPNAL 193

Query: 109 LIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQ 168
           LIIGLP+GPTAHFKL+ LVLRKDIKNHG PT H PELVLNNF TRLGHRVGR+IQSLFPQ
Sbjct: 194 LIIGLPEGPTAHFKLTNLVLRKDIKNHGVPTSHQPELVLNNFTTRLGHRVGRMIQSLFPQ 253

Query: 169 SPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRL 228
            PEF+GRRVVTFHNQRDFIFFRHHRYIFETKE K  ++ GK  +D KSEK    K I RL
Sbjct: 254 DPEFKGRRVVTFHNQRDFIFFRHHRYIFETKEIKKIESKGKNDEDGKSEKVPDHKTIARL 313

Query: 229 QECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
           QECGPRFTLKL SLQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 314 QECGPRFTLKLKSLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 356

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2116992	343	MEE49 "AT4G01560" [Arabidopsis	0.752	0.594	0.820	1.5e-92
UNIPROTKB|A4FUG9	349	BXDC5 "Uncharacterized protein	0.546	0.424	0.556	1.6e-59
UNIPROTKB|Q9H9Y2	349	RPF1 "Ribosome production fact	0.546	0.424	0.556	1.6e-59
UNIPROTKB|Q5R631	349	RPF1 "Ribosome production fact	0.546	0.424	0.556	1.6e-59
UNIPROTKB|E2RLN4	349	RPF1 "Uncharacterized protein"	0.546	0.424	0.556	2.6e-59
UNIPROTKB|I3LN44	339	RPF1 "Uncharacterized protein"	0.546	0.436	0.549	5.4e-59
MGI|MGI:1917535	349	Rpf1 "ribosome production fact	0.546	0.424	0.543	5.4e-59
UNIPROTKB|F1NRK2	347	RPF1 "Uncharacterized protein"	0.557	0.435	0.538	3.8e-58
UNIPROTKB|Q8AVP1	343	rpf1 "Ribosome production fact	0.571	0.451	0.506	6.9e-57
ZFIN|ZDB-GENE-040625-177	352	rpf1 "ribosome production fact	0.557	0.428	0.512	2e-55

TAIR|locus:2116992 MEE49 "AT4G01560" [Arabidopsis thaliana (taxid:3702)]

 Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
 Identities = 178/217 (82%), Positives = 187/217 (86%)

Query:    55 RGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLP 114
             RGPA ISELLSVIPNSHY KRGTYDLKKI+EYA KKDFTS+IVVHTNRREPDALLIIGLP
Sbjct:   140 RGPALISELLSVIPNSHYQKRGTYDLKKIVEYATKKDFTSLIVVHTNRREPDALLIIGLP 199

Query:   115 DGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRG 174
             +GPTAHFKLS LVLRKDIKNHGNPT H PELVLNNF TRLG+RVGR  QSLFP  P FRG
Sbjct:   200 NGPTAHFKLSNLVLRKDIKNHGNPTSHQPELVLNNFTTRLGNRVGRFFQSLFPPDPNFRG 259

Query:   175 RRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPR 234
             RRVVTFHNQRDFIFFRHHRYIFETKESK             S+K  ++ +  RLQECGPR
Sbjct:   260 RRVVTFHNQRDFIFFRHHRYIFETKESK-------------SDKGKEETIKPRLQECGPR 306

Query:   235 FTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
             FTLKLV+LQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
Sbjct:   307 FTLKLVTLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 343

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0048366 "leaf development" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

UNIPROTKB|A4FUG9 BXDC5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 446 (162.1 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
 Identities = 84/151 (55%), Positives = 114/151 (75%)

Query:    62 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 120
             +L +VIPNSH YY+RG   LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAH
Sbjct:   162 QLSTVIPNSHVYYRRGLA-LKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPNGPTAH 220

Query:   121 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 179
             FK+S + LRK+IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V T
Sbjct:   221 FKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280

Query:   180 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
             FHNQRD+IFFR HRYIF++++  G    G +
Sbjct:   281 FHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 311

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q9H9Y2 RPF1 "Ribosome production factor 1" [Homo sapiens (taxid:9606)]

 Score = 446 (162.1 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
 Identities = 84/151 (55%), Positives = 113/151 (74%)

Query:    62 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 120
             +L +VIPNSH YY+RG   LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAH
Sbjct:   162 QLSTVIPNSHVYYRRGLA-LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220

Query:   121 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 179
             FK+S + LRK+IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V T
Sbjct:   221 FKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280

Query:   180 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
             FHNQRD+IFFR HRYIF +++  G    G +
Sbjct:   281 FHNQRDYIFFRFHRYIFRSEKKVGIQELGPR 311

GO:0006364 "rRNA processing" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

UNIPROTKB|Q5R631 RPF1 "Ribosome production factor 1" [Pongo abelii (taxid:9601)]

 Score = 446 (162.1 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
 Identities = 84/151 (55%), Positives = 113/151 (74%)

Query:    62 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 120
             +L +VIPNSH YY+RG   LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAH
Sbjct:   162 QLSTVIPNSHVYYRRGLA-LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220

Query:   121 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 179
             FK+S + LRK+IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V T
Sbjct:   221 FKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280

Query:   180 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
             FHNQRD+IFFR HRYIF +++  G    G +
Sbjct:   281 FHNQRDYIFFRFHRYIFRSEKKVGIQELGPR 311

GO:0003723 "RNA binding" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

UNIPROTKB|E2RLN4 RPF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 444 (161.4 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
 Identities = 84/151 (55%), Positives = 113/151 (74%)

Query:    62 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 120
             +L +VIPNSH YY+RG   LKKII     +DFT +IV++ +R+ P+ L++  LP GPTAH
Sbjct:   162 QLSTVIPNSHVYYRRGLA-LKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPSGPTAH 220

Query:   121 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 179
             FK+S + LRK+IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V T
Sbjct:   221 FKMSSVRLRKEIKRRGKDPTEHIPEVILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280

Query:   180 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
             FHNQRD+IFFR HRYIF++++  G    G +
Sbjct:   281 FHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 311

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|I3LN44 RPF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 441 (160.3 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
 Identities = 83/151 (54%), Positives = 113/151 (74%)

Query:    62 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 120
             +L +VIPNSH YY+RG   LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAH
Sbjct:   152 QLSTVIPNSHVYYRRGLA-LKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPNGPTAH 210

Query:   121 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 179
             FK+S + LRK+IK  G +PT H PE++LNNF TRLGH +GR+  SLFP +P+F GR+V T
Sbjct:   211 FKMSSVRLRKEIKRRGKDPTEHTPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 270

Query:   180 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
             FHNQRD+IFFR HRYIF++++  G    G +
Sbjct:   271 FHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 301

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

MGI|MGI:1917535 Rpf1 "ribosome production factor 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 441 (160.3 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
 Identities = 82/151 (54%), Positives = 114/151 (75%)

Query:    62 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 120
             +L +VIP+SH YY+RG   LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAH
Sbjct:   162 QLSTVIPDSHVYYRRGLA-LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220

Query:   121 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 179
             FK+S + LRK+IK  G +PT H+PE++LNNF TRLGH +GR+  SLFP +P+F GR+V T
Sbjct:   221 FKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280

Query:   180 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
             FHNQRD+IFFR HRYIF++++  G    G +
Sbjct:   281 FHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 311

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0019843 "rRNA binding" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1NRK2 RPF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 443 (161.0 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
 Identities = 83/154 (53%), Positives = 113/154 (73%)

Query:    59 FISELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 117
             F  +L +VIPNSH YY+RG   LK+II     +DFT +IV++ +R+ P+ L++  LPDGP
Sbjct:   157 FCEQLSTVIPNSHVYYRRGLA-LKRIIPQCIARDFTDLIVINEDRKIPNGLVLSHLPDGP 215

Query:   118 TAHFKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRR 176
             TAHF++S + LRK+IK  G  PT H+PE++LNNF TRLGH +GR+  SLFP  P+F GR+
Sbjct:   216 TAHFRMSSVRLRKEIKRKGKEPTEHVPEVILNNFTTRLGHSIGRMFASLFPHDPQFIGRQ 275

Query:   177 VVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
             V TFHNQRD+IFFR HRYIF++++  G    G +
Sbjct:   276 VATFHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 309

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q8AVP1 rpf1 "Ribosome production factor 1" [Xenopus laevis (taxid:8355)]

 Score = 430 (156.4 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
 Identities = 80/158 (50%), Positives = 112/158 (70%)

Query:    55 RGPAFISELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL 113
             R   F  +L S+IPNS  YY+RG   LKKII     +D+T ++V++ +R+ P+ L++  L
Sbjct:   149 RSVRFTEQLSSIIPNSDVYYRRGLA-LKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHL 207

Query:   114 PDGPTAHFKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEF 172
             PDGPTAHFK+S + LRK++K  G  PT H PE++LNNF TRLGH +GR+  SL+P  P F
Sbjct:   208 PDGPTAHFKISNVRLRKEMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHF 267

Query:   173 RGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
              GR+V TFHNQRD+IFFR+HRY+F++++  G    G +
Sbjct:   268 VGRQVATFHNQRDYIFFRYHRYLFKSEKKVGIQELGPR 305

GO:0003723 "RNA binding" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

ZFIN|ZDB-GENE-040625-177 rpf1 "ribosome production factor 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 423 (154.0 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
 Identities = 79/154 (51%), Positives = 111/154 (72%)

Query:    59 FISELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 117
             F  +L +VIP+++ YY+RG   LKK+I     + FT ++V++ +R+ P+ +++  LPDGP
Sbjct:   162 FCDQLATVIPHAYVYYRRGLA-LKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGP 220

Query:   118 TAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRR 176
             TAHFK+S + LRK++K  G NPT H PE++LNNF TRLGH +GRL  +LFP  P+F GR+
Sbjct:   221 TAHFKVSSVRLRKEMKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQ 280

Query:   177 VVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
             V TFHNQRDFIFFR HRYIF+ ++  G    G +
Sbjct:   281 VATFHNQRDFIFFRFHRYIFKNEKKVGIQELGPR 314

GO:0005730 "nucleolus" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0019843 "rRNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XIV0226	hypothetical protein (371 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.I.4832.1	hypothetical protein (422 aa)				•	•				0.597
	estExt_fgenesh4_pg.C_LG_XV0629	hypothetical protein (314 aa)				•	•		•		0.588
	gw1.86.17.1	hypothetical protein (573 aa)				•	•				0.578
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•					0.577
	estExt_Genewise1_v1.C_LG_IV0024	SubName- Full=Putative uncharacterized protein; (604 aa)				•	•				0.559
	eugene3.00090493	hypothetical protein (840 aa)				•	•				0.515
	estExt_fgenesh4_pm.C_1070023	hypothetical protein (554 aa)				•					0.512
	eugene3.00640202	hypothetical protein (1181 aa)				•					0.490
	grail3.0101007501	hypothetical protein (229 aa)				•					0.474
	eugene3.00110946	hypothetical protein (317 aa)				•	•		•		0.473

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
smart00879	180	smart00879, Brix, The Brix domain is found in a nu	1e-44
pfam04427	176	pfam04427, Brix, Brix domain	6e-41
COG2136	191	COG2136, IMP4, Predicted exosome subunit/U3 small	2e-32

>gnl|CDD|214879 smart00879, Brix, The Brix domain is found in a number of eukaryotic proteins

 Score =  148 bits (376), Expect = 1e-44
 Identities = 69/189 (36%), Positives = 93/189 (49%), Gaps = 33/189 (17%)

Query: 59  FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVH--TNRREPDALLIIGLPDG 116
              +L  + P S    RG   L +++E+A +K  T ++VV   +++  P  L I  LP+G
Sbjct: 15  LAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNG 74

Query: 117 PTAHFKLSKLVLRKDIKN---HGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFR 173
           PT  FK+  + LRK++K        TG  P L+ NNF T LG  +  L Q LFP  PE +
Sbjct: 75  PTLDFKILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIKELFQDLFPGPPEHK 134

Query: 174 -----GRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRL 228
                 RRVVTF NQ D+IFFRH+R  F  K+ +                         L
Sbjct: 135 KSLPGLRRVVTFSNQDDYIFFRHYRIKFGKKKPR-----------------------VEL 171

Query: 229 QECGPRFTL 237
           QE GPRFTL
Sbjct: 172 QEIGPRFTL 180

Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. Length = 180

>gnl|CDD|218084 pfam04427, Brix, Brix domain

 Score =  138 bits (351), Expect = 6e-41
 Identities = 69/192 (35%), Positives = 89/192 (46%), Gaps = 37/192 (19%)

Query: 59  FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
              +L  + PN+    RG   LK ++E+A +K  TS++V     ++P  L I  LP+GPT
Sbjct: 14  LAKDLRLLFPNAKKLNRGKKKLKDLLEFAGEKGDTSLLVFGE-HKKPLNLTIGRLPNGPT 72

Query: 119 AHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATR--LGHRVGRLIQSLFPQ-----SP 170
             F++S + L KDIK  G    G  P LV N F         +  L+Q LFP       P
Sbjct: 73  LEFRISNVKLLKDIKGKGKGNKGSRPLLVFNGFFFTRLGLKLIKELLQDLFPGPNVHKIP 132

Query: 171 EFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQE 230
              G RV+TF NQRD IFFRH+RY                            K    LQE
Sbjct: 133 LKGGDRVITFSNQRDTIFFRHYRY----------------------------KKKVELQE 164

Query: 231 CGPRFTLKLVSL 242
            GPRFTLKL  +
Sbjct: 165 IGPRFTLKLRRI 176

Length = 176

>gnl|CDD|225047 COG2136, IMP4, Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

 Score =  117 bits (295), Expect = 2e-32
 Identities = 59/197 (29%), Positives = 87/197 (44%), Gaps = 32/197 (16%)

Query: 59  FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL-PDGP 117
           F  +L  V+PN+++ +RG   + ++ E A  +  T +++V   R  P  L    L P+G 
Sbjct: 19  FAKDLSRVLPNAYFLRRGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGL 78

Query: 118 TAHFKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLGH-RVGRLIQSL----FPQSPE 171
           T  FKLS + LR++I   G     H PEL+ NNF T LG  +V      L    F  +P 
Sbjct: 79  TFSFKLSGVKLRREIPVLGPKSRLHGPELIFNNFTTLLGFLKVAEAFSELLLVKFVPNPA 138

Query: 172 FRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQEC 231
           +    V T  N+ DF   R HR +FE                              L+E 
Sbjct: 139 WEHELVATGANKGDFKSLRRHRRVFEEDG-------------------------IGLEEV 173

Query: 232 GPRFTLKLVSLQHGTFD 248
           GPR TL+L  ++ G  +
Sbjct: 174 GPRLTLRLWRMEDGRGE 190

Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
KOG2780	302	consensus Ribosome biogenesis protein RPF1, contai	100.0
KOG2781	290	consensus U3 small nucleolar ribonucleoprotein (sn	100.0
KOG2963	405	consensus RNA-binding protein required for 60S rib	100.0
KOG2971	299	consensus RNA-binding protein required for biogene	100.0
PF04427	191	Brix: Brix domain; InterPro: IPR007109 The Brix do	100.0
smart00879	180	Brix Brix domain. The Brix domain is found in a nu	100.0
COG5154	283	BRX1 RNA-binding protein required for 60S ribosoma	100.0
COG2136	191	IMP4 Predicted exosome subunit/U3 small nucleolar	100.0
PRK03972	208	ribosomal biogenesis protein; Validated	99.94
KOG3031	307	consensus Protein required for biogenesis of the r	99.4
PRK00933	165	ribosomal biogenesis protein; Validated	99.23
COG5106	316	RPF2 Uncharacterized conserved protein [Function u	98.13
PRK03972	208	ribosomal biogenesis protein; Validated	94.82

>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]

Probab=100.00  E-value=5.8e-58  Score=406.29  Aligned_cols=207  Identities=60%  Similarity=0.972  Sum_probs=200.7

Q ss_pred             CCeEEEEecCCCCchHHHHHHHHHhcCCCcEEcccccccHHHHHHHHHhCCCcEEEEEEecCCCCCeEEEEecCCCceEE
Q 024165           41 FLYCLPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH  120 (271)
Q Consensus        41 ~pkilIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~~~t~lIi~~e~k~~p~~L~I~~lP~GPT~~  120 (271)
                      .||+|||++.+|+.++..|+.+|+.++||+....|++.+++.++++|..+++|++++++++++.|+.|.|+|+|+|||++
T Consensus        96 spKvlITt~~~~~~~t~~~~~eL~~iiPNs~~~~R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~GPT~~  175 (302)
T KOG2780|consen   96 SPKVLITTSKNPKRTTYKFASELLDIIPNSTVKKRDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNGPTAY  175 (302)
T ss_pred             CccEEEEcCCCCcccHHHHHHHHHHhCCCceEEecCCchHHHHHHHHHHhcCCceEEEecCcCCccceEEEecCCCCceE
Confidence            39999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeceeehhhhccCCCCCCCCceEEccCCCCchhHHHHHHhhhhCCCCCCCCCCeEEEEEecCCeEEEEeeeeEEEecc
Q 024165          121 FKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKE  200 (271)
Q Consensus       121 F~I~n~~l~kdi~~~~~~~~~~P~LI~nnF~t~~g~~i~~~l~~lFp~~p~~~~rRVv~F~~~~d~I~fRhy~Y~~~~~~  200 (271)
                      |++.|+.+.+||+.+|.+++|.|+||+|||+|++|..++++|++|||.+|++.+||||+|++|+|+|+||||||.|...+
T Consensus       176 Fkls~~~~~kdi~k~g~~t~h~PElIlNNFtTrlG~~v~r~f~sLfp~~p~f~gRrvvtFhnQrD~IfFRhhRY~Fkee~  255 (302)
T KOG2780|consen  176 FKLSNVVLTKDIKKHGRPTSHIPELILNNFTTRLGMTVGRLFASLFPHDPQFTGRRVVTFHNQRDYIFFRHHRYEFKEEE  255 (302)
T ss_pred             EEeecccchhhhhhcCCcccccchhhhhcccchhhHHHHHHHHHhCCCCccccceeEEEEEecCceEEEEEEEEeecccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999997654


Q ss_pred             CCCCCCCCccccchhhhccccccceeeeEeeeceeEEEEEEeecccCCCCcceEEEEeCCCCCccccccCC
Q 024165          201 SKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL  271 (271)
Q Consensus       201 ~~~~~~s~~~~~~~~~~~~~~~~~~v~L~EIGPRftLkL~kI~~G~~~~~~~~~~~~~k~~~~~~r~~~~l  271 (271)
                      .                       ++.|+|+||||||+|.+.++|+|+.+.|+++|+.++ |+++|++|||
T Consensus       256 ~-----------------------kvglqElGPrfTLrL~~lq~G~fd~K~ge~~~~~~~-~~tsrr~f~L  302 (302)
T KOG2780|consen  256 I-----------------------KVGLQELGPRFTLRLRRLQKGTFDEKEGEFEWVHKK-METSRRKFFL  302 (302)
T ss_pred             c-----------------------ccchhhcCCceeeeehhhhhccccccceeeeeeecc-cccchhcccC
Confidence            3                       369999999999999999999999999999999999 9999999998

>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]

Probab=100.00  E-value=4.2e-57  Score=396.56  Aligned_cols=216  Identities=38%  Similarity=0.644  Sum_probs=203.1

Q ss_pred             cccchhhccCCCCeEEEEecCCCCchHHHHHHHHHhcCCCcEEcccccccHHHHHHHHHhCCCcEEEEEEecCCCCCeEE
Q 024165           30 QSTWAWDNLWHFLYCLPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALL  109 (271)
Q Consensus        30 ~~~~~~~~l~~~pkilIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~~~t~lIi~~e~k~~p~~L~  109 (271)
                      -++|.+ .+...|||+|||||+||+++.+|+|+|+.+|||+...+||++.+.++++.|..+|+|++|+++|++|.|.+|.
T Consensus        72 ddEy~~-ag~~dPKimvTTSR~PSsrL~~FaKelkLvfPNaqr~nRG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~  150 (290)
T KOG2781|consen   72 DDEYRW-AGEEDPKIMVTTSRDPSSRLKMFAKELKLVFPNAQRLNRGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLV  150 (290)
T ss_pred             cHHHHh-ccCCCCcEEEEeCCCchHHHHHHHHhheEeccChhhhcccceeHHHHHHHHHHCCCceEEEEeccCCCCCceE
Confidence            456777 6778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCceEEEEEeceeehhhhccCCCCCCCCceEEccCCCCchhHHHHHHhhhhCCCCCCCCCCeEEEEEecCCeEEE
Q 024165          110 IIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF  189 (271)
Q Consensus       110 I~~lP~GPT~~F~I~n~~l~kdi~~~~~~~~~~P~LI~nnF~t~~g~~i~~~l~~lFp~~p~~~~rRVv~F~~~~d~I~f  189 (271)
                      |||+|.|||+.|.|.|+.+++||+..|+++..+|+||||||+|.+|++++++|.+|||. |+..++|||+|.|++|+|.|
T Consensus       151 vshlPfGPTa~Fsl~nvVmRhdip~~G~msE~~phlIfdNf~t~lG~Rv~~iLkhLFP~-pk~ds~Rvvtf~N~~DyIsF  229 (290)
T KOG2781|consen  151 VSHLPFGPTAFFSLHNVVMRHDIPDIGTMSEQKPHLIFDNFTTKLGKRVKTILKHLFPV-PKDDSKRVVTFANRNDYISF  229 (290)
T ss_pred             EEecCCCCceEeeeeeeeecccccccccccccCceEEeccccchHHHHHHHHHHHhCCC-CcCCcccEEEEecCCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999995 88889999999999999999


Q ss_pred             EeeeeEEEeccCCCCCCCCccccchhhhccccccceeeeEeeeceeEEEEEEeecccCCCCcceEEEEeCCCCCcccccc
Q 024165          190 RHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRF  269 (271)
Q Consensus       190 Rhy~Y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~L~EIGPRftLkL~kI~~G~~~~~~~~~~~~~k~~~~~~r~~~  269 (271)
                      |||.|.-...  +                      .+.|.|+||||.|+|+.|..|+++...+++||++||||+|+|||-
T Consensus       230 Rhhvy~~~~~--k----------------------~vel~evGPRfelklyeIrlGTlE~~~ad~EW~~rpY~nTa~kR~  285 (290)
T KOG2781|consen  230 RHHVYKKTDG--K----------------------EVELTEVGPRFELKLYEIRLGTLEIKDADVEWVLRPYMNTARKRD  285 (290)
T ss_pred             EEEEEecCCC--c----------------------eEEEeeccccceeeeeeeeecceeccccceeEEecchhcchhhhh
Confidence            9988864321  1                      158999999999999999999999889999999999999999986


Q ss_pred             CC
Q 024165          270 FL  271 (271)
Q Consensus       270 ~l  271 (271)
                      +|
T Consensus       286 ~l  287 (290)
T KOG2781|consen  286 FL  287 (290)
T ss_pred             hh
Confidence            64

>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.3e-46  Score=339.09  Aligned_cols=231  Identities=22%  Similarity=0.234  Sum_probs=194.8

Q ss_pred             chhhccCCCCeEEEEecCCCCchHHHHHHHHHhcC-CCcE--EcccccccHHHHHHHHHhCCCcEEEEEEecCCCCCeEE
Q 024165           33 WAWDNLWHFLYCLPVYMLFILQRGPAFISELLSVI-PNSH--YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALL  109 (271)
Q Consensus        33 ~~~~~l~~~pkilIttSr~ps~~~r~f~kdL~~l~-Pns~--~~~R~k~~lkdl~~~a~~~~~t~lIi~~e~k~~p~~L~  109 (271)
                      --+.+++..|.|+|.+++-....+++|..|||++| ||+.  ...|++|+|||++.+|+.+|+||+++++.+..+ .+|+
T Consensus        17 ~~e~~i~~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~lskt~~n-lslk   95 (405)
T KOG2963|consen   17 EQEIEIAKSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLSKTETN-LSLK   95 (405)
T ss_pred             cchhhcccCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEecccCc-eeEE
Confidence            34567788999999999999999999999999999 9974  567899999999999999999999999999875 5799


Q ss_pred             EEecCCCceEEEEEeceeehhhhccCCC-------CCCCCceEEccCCCCc---hhHHHHHHhhhhCCCC-CC----CCC
Q 024165          110 IIGLPDGPTAHFKLSKLVLRKDIKNHGN-------PTGHIPELVLNNFATR---LGHRVGRLIQSLFPQS-PE----FRG  174 (271)
Q Consensus       110 I~~lP~GPT~~F~I~n~~l~kdi~~~~~-------~~~~~P~LI~nnF~t~---~g~~i~~~l~~lFp~~-p~----~~~  174 (271)
                      |+++|.|||++|+|+.|++.+|+.+...       .+.++|+||+|||++.   +.+++..|||+|||++ +.    .++
T Consensus        96 i~R~PqGPTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsInv~tvnlnti  175 (405)
T KOG2963|consen   96 IARTPQGPTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSINVATVNLNTI  175 (405)
T ss_pred             EEecCCCCceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcCcceeeccce
Confidence            9999999999999999999999988532       2689999999999954   6789999999999994 22    378


Q ss_pred             CeEEEEEe--cCCeEEEEeeeeEEEeccCC-------------------------------CC-CCCCccccchhhhc--
Q 024165          175 RRVVTFHN--QRDFIFFRHHRYIFETKESK-------------------------------GS-DANGKKAKDAKSEK--  218 (271)
Q Consensus       175 rRVv~F~~--~~d~I~fRhy~Y~~~~~~~~-------------------------------~~-~~s~~~~~~~~~~~--  218 (271)
                      +||+++++  +++.|.||||.+.+.+.+..                               .| .+||||.||++.-+  
T Consensus       176 kRcllinyn~dt~eIdmRHysI~vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~e~d~~~~i~  255 (405)
T KOG2963|consen  176 KRCLLINYNRDTGEIDMRHYSIRVVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEIEDDATVRIV  255 (405)
T ss_pred             eEEEEEecCCCCCeeeeeeeEEEEEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCcccccccccccccceEEe
Confidence            99999996  68899999965555443321                               02 47888877666410  


Q ss_pred             --------------------cccccceeeeEeeeceeEEEEEEeecccCCCCcceEEEEeCCCCCc
Q 024165          219 --------------------TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDT  264 (271)
Q Consensus       219 --------------------~~~~~~~v~L~EIGPRftLkL~kI~~G~~~~~~~~~~~~~k~~~~~  264 (271)
                                          ...++++|+|+||||||||+|+||++|.|+|+++||+|+.|+..+.
T Consensus       256 ~~~~~~~eveL~q~~~s~g~~~~qksaikL~EIGPRlTlqLvKIeEGi~~GkVlyH~hv~Kt~eEi  321 (405)
T KOG2963|consen  256 DNQDVKEEVELPQPKASRGNQPPQKSAIKLTEIGPRLTLQLVKIEEGICEGKVLYHEHVQKTEEEI  321 (405)
T ss_pred             ccccchhhhhccccccccCCCcccccceeeEeecccceEEEEEeeccccccceEEeehhcCCHHHH
Confidence                                1134678999999999999999999999999999999999997543

>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.6e-41  Score=297.15  Aligned_cols=195  Identities=23%  Similarity=0.333  Sum_probs=171.2

Q ss_pred             CCeEEEEecCCCCchHHHHHHHHHhcCCCcEEccc--ccccHHHHHHHHHhCCCcEEEEEEecCCCCCeEEEEecCCCce
Q 024165           41 FLYCLPVYMLFILQRGPAFISELLSVIPNSHYYKR--GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT  118 (271)
Q Consensus        41 ~pkilIttSr~ps~~~r~f~kdL~~l~Pns~~~~R--~k~~lkdl~~~a~~~~~t~lIi~~e~k~~p~~L~I~~lP~GPT  118 (271)
                      .+++||++||+.|-++|+||+||..++||++...+  .+.++-.|.++|...+|+.+++|+.++....||||++.|+|||
T Consensus        49 K~rvlv~ssRgis~R~RhLm~di~~Llph~k~dsk~d~~k~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpS  128 (299)
T KOG2971|consen   49 KERVLVLSSRGISFRTRHLMKDISSLLPHSKKDSKLDRKKKLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPS  128 (299)
T ss_pred             ceeEEEEecCCchHHHHHHHHHHHHhcccccccchhhhcchHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCc
Confidence            57999999999999999999999999999988766  3678999999999999999999999999999999999999999


Q ss_pred             EEEEEeceeehhhhccCCCCC-CCCceEEcc-CCCC-chhHHHHHHhhhhCCCCCCC------CCCeEEEEEecCCeEEE
Q 024165          119 AHFKLSKLVLRKDIKNHGNPT-GHIPELVLN-NFAT-RLGHRVGRLIQSLFPQSPEF------RGRRVVTFHNQRDFIFF  189 (271)
Q Consensus       119 ~~F~I~n~~l~kdi~~~~~~~-~~~P~LI~n-nF~t-~~g~~i~~~l~~lFp~~p~~------~~rRVv~F~~~~d~I~f  189 (271)
                      ++|.|+|+++|+|++.+|||. +++|+|.|+ +|++ ++.++++++|.+.|+. |+.      ..+||++|++.+|.|||
T Consensus       129 vkFlv~n~hTM~ElkmtgN~lkgsrplLsFd~~Fd~~pHlkl~Kell~q~fgi-P~~hrkSkpf~Dhvf~Fsi~D~~IWf  207 (299)
T KOG2971|consen  129 VKFLVHNVHTMAELKMTGNCLKGSRPLLSFDKAFDELPHLKLLKELLEQIFGI-PKHHRKSKPFVDHVFTFSILDGKIWF  207 (299)
T ss_pred             eEEehhhhhhHHHhCCccccccCCcceeecccccccchHHHHHHHHHHHHcCC-CCCCcccCCccceEEEEEEecCeEEE
Confidence            999999999999999999995 799999998 7995 5679999999999987 431      36899999999999999


Q ss_pred             EeeeeEEEeccCCCCCCCCccccchhhhccccccceeeeEeeeceeEEEEEEeecccCCCCcceEEEEeCCCCCcc
Q 024165          190 RHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTS  265 (271)
Q Consensus       190 Rhy~Y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~L~EIGPRftLkL~kI~~G~~~~~~~~~~~~~k~~~~~~  265 (271)
                      |+  |+|+..+.                        ..|+||||||+|.+++|.+|+|+|.   ..|.+..|...+
T Consensus       208 Rn--yqI~~~ed------------------------~~L~EiGPRfvl~~ikif~gsFgG~---~lYenp~yvspn  254 (299)
T KOG2971|consen  208 RN--YQISEEED------------------------KTLIEIGPRFVLNVIKIFEGSFGGP---TLYENPKYVSPN  254 (299)
T ss_pred             EE--eEeccccC------------------------cceeeeccHHHHhHHHHHhccCCCc---eeecCccccCHH
Confidence            99  67752221                        3899999999999999999999755   455555554443

>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins

Probab=100.00  E-value=4.7e-41  Score=290.55  Aligned_cols=179  Identities=38%  Similarity=0.560  Sum_probs=80.6

Q ss_pred             EEecCCCCchHHHHHHHHHhcC-CCcEEcccccc-cHHHHHHHHHhCCCcEEEEEEecCCCCCeEEEEecCCCceEEEEE
Q 024165           46 PVYMLFILQRGPAFISELLSVI-PNSHYYKRGTY-DLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKL  123 (271)
Q Consensus        46 IttSr~ps~~~r~f~kdL~~l~-Pns~~~~R~k~-~lkdl~~~a~~~~~t~lIi~~e~k~~p~~L~I~~lP~GPT~~F~I  123 (271)
                      ||||++||+++++|++||+.++ ||+.+.+|++. +++|++++|..++|++++++++++++|++|||+++|+|||++|+|
T Consensus         1 i~ts~~~s~~~~~l~~DL~~l~~p~s~~~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~I   80 (191)
T PF04427_consen    1 ITTSRKPSKRLRQLMKDLRSLFPPNSKKLNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFSI   80 (191)
T ss_dssp             -EESSS--HHHHHHHHHHHTTS-TTEEE---TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEEE
Confidence            7999999999999999999999 99999999977 999999999999999999999999999999999999999999999


Q ss_pred             eceeehhhhccCCC-CCCCCceEEccCCCCch---hHHHHHHhhhhCCCC-----CCCCCCeEEEEEecCCe-EEEEeee
Q 024165          124 SKLVLRKDIKNHGN-PTGHIPELVLNNFATRL---GHRVGRLIQSLFPQS-----PEFRGRRVVTFHNQRDF-IFFRHHR  193 (271)
Q Consensus       124 ~n~~l~kdi~~~~~-~~~~~P~LI~nnF~t~~---g~~i~~~l~~lFp~~-----p~~~~rRVv~F~~~~d~-I~fRhy~  193 (271)
                      .||.+++|+++... ..+++|+|||+||.++.   +++++++|++|||..     +...++||++|++++|. |||||| 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~d~~I~fR~Y-  159 (191)
T PF04427_consen   81 ENYKLMKDIKSSSKRPKGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQRDFVIFFRHY-  159 (191)
T ss_dssp             EEEE-HHHHT-------S---EEEEE------------------------------------------------------
T ss_pred             EeEEEhhHhcccccCCCCCCeEEEEEecccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            99999999987543 34788999999998765   899999999999984     12468999999999898 999995 


Q ss_pred             eEEEeccCCCCCCCCccccchhhhccccccceeeeEeeeceeEEEEEEe
Q 024165          194 YIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL  242 (271)
Q Consensus       194 Y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~L~EIGPRftLkL~kI  242 (271)
                      .  ..++.+.               ..+-..+|+|+||||||||+|++|
T Consensus       160 i--~~~~~~~---------------~~~~~~~v~L~EiGPr~~l~l~kI  191 (191)
T PF04427_consen  160 I--FKSGSKN---------------PKKLLPRVELVEIGPRFTLKLRKI  191 (191)
T ss_dssp             -------------------------------------------------
T ss_pred             c--ccccccc---------------ccccccccccccccccccccccCC
Confidence            2  2111100               000012479999999999999987

There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.

>smart00879 Brix Brix domain

Probab=100.00  E-value=4.6e-37  Score=262.06  Aligned_cols=170  Identities=43%  Similarity=0.658  Sum_probs=147.2

Q ss_pred             EEEecCCCCchHHHHHHHHHhcCCCcEEcccccccHHHHHHHHHhCCCcEEEEEEec--CCCCCeEEEEecCCCceEEEE
Q 024165           45 LPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN--RREPDALLIIGLPDGPTAHFK  122 (271)
Q Consensus        45 lIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~~~t~lIi~~e~--k~~p~~L~I~~lP~GPT~~F~  122 (271)
                      ||||||+||+++++|++||+.++|++.+.+|+++.++++.++|...+.++.+++.|.  +|+|.+|||+++|+|||++|.
T Consensus         1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l~f~   80 (180)
T smart00879        1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTLDFK   80 (180)
T ss_pred             CEEcCCCCCHHHHHHHHHHHHHCCCcEeecccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcEEEE
Confidence            689999999999999999999999999999999999999999998855555555555  788999999999999999999


Q ss_pred             Eeceeehhhhcc--CCCC-CCCCceEEccCCCCchhHHHHHHhhhhCCCCCCC-----CCCeEEEEEecCCeEEEEeeee
Q 024165          123 LSKLVLRKDIKN--HGNP-TGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEF-----RGRRVVTFHNQRDFIFFRHHRY  194 (271)
Q Consensus       123 I~n~~l~kdi~~--~~~~-~~~~P~LI~nnF~t~~g~~i~~~l~~lFp~~p~~-----~~rRVv~F~~~~d~I~fRhy~Y  194 (271)
                      +.++.+.+|+..  .+++ .+++|+|||+||.++.+++++++|+.|||..+..     ..+||++|++++|.||||||+|
T Consensus        81 i~~v~~~~~~~~~~~~~~~~~~~P~li~~~~~~~~~~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~~~I~~R~y~i  160 (180)
T smart00879       81 ILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHYRI  160 (180)
T ss_pred             EECcccHhhhhhhhcCCCcCCCccEEEECCCCCchHHHHHHHHHHHCCCCCccccccCCCCEEEEEEecCCEEEEEEEEE
Confidence            999999999987  3443 6789999999999999999999999999985432     5799999999999999999776


Q ss_pred             EEEeccCCCCCCCCccccchhhhccccccceeeeEeeeceeEE
Q 024165          195 IFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL  237 (271)
Q Consensus       195 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~L~EIGPRftL  237 (271)
                      .+....                       .+++|+||||||+|
T Consensus       161 ~~~~~~-----------------------~~v~l~eiGPr~~l  180 (180)
T smart00879      161 KFGKKK-----------------------PRVELQEIGPRFTL  180 (180)
T ss_pred             EccCCC-----------------------CceEEEEecCCccC
Confidence            541111                       13699999999986

The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.

>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.9e-37  Score=267.66  Aligned_cols=192  Identities=19%  Similarity=0.304  Sum_probs=167.4

Q ss_pred             CCCeEEEEecCCCCchHHHHHHHHHhcCCCcEEcccc--cccHHHHHHHHHhCCCcEEEEEEecCCCCCeEEEEecCCCc
Q 024165           40 HFLYCLPVYMLFILQRGPAFISELLSVIPNSHYYKRG--TYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP  117 (271)
Q Consensus        40 ~~pkilIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~--k~~lkdl~~~a~~~~~t~lIi~~e~k~~p~~L~I~~lP~GP  117 (271)
                      ..++++|++||++|.++|||++||..++||+++..+.  +..+.+|.++|..++|+++++|+.++....+||+++.|+||
T Consensus        29 ~kq~~lilSsRGvsyr~RHL~~Dls~l~phskke~KlD~kk~l~qLnelaelynCnn~lFFesrkr~Dlyl~~ar~pnGp  108 (283)
T COG5154          29 PKQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRKRSDLYLMGARIPNGP  108 (283)
T ss_pred             ccceEEEEecCCchHHHHHHHHHHHHhCcccccccccchhhhHHHHHHHHHHhcCCceEEEeecccccceeeeccCCCCC
Confidence            3589999999999999999999999999999888774  67899999999999999999999999999999999999999


Q ss_pred             eEEEEEeceeehhhhccCCCCC-CCCceEEcc-CCCC-chhHHHHHHhhhhCCCCCC-----CCCCeEEEEEecCCeEEE
Q 024165          118 TAHFKLSKLVLRKDIKNHGNPT-GHIPELVLN-NFAT-RLGHRVGRLIQSLFPQSPE-----FRGRRVVTFHNQRDFIFF  189 (271)
Q Consensus       118 T~~F~I~n~~l~kdi~~~~~~~-~~~P~LI~n-nF~t-~~g~~i~~~l~~lFp~~p~-----~~~rRVv~F~~~~d~I~f  189 (271)
                      |++|+++|.++|+|+...||+. +++|.|.|+ .|++ ++.+.+++++++.|...+.     ...++|++|+..+|.||+
T Consensus       109 tvkF~~~NlhTMdelNftgN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f~i~DgkIWv  188 (283)
T COG5154         109 TVKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFILDGKIWV  188 (283)
T ss_pred             eEEEEEeccchHhhcCCccccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccchhheEEEEEecCeEEE
Confidence            9999999999999999999985 689999998 5985 6779999999999976322     246899999999999999


Q ss_pred             EeeeeEEEeccCCCCCCCCccccchhhhccccccceeeeEeeeceeEEEEEEeecccCCCCcc
Q 024165          190 RHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGG  252 (271)
Q Consensus       190 Rhy~Y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~L~EIGPRftLkL~kI~~G~~~~~~~  252 (271)
                      |+  |.|......                 +.+  .|+|.||||||+|.+++|.+|+|+|...
T Consensus       189 R~--YeI~re~ed-----------------~~~--dv~L~EIGPRfVmtvi~iLEgsFgGp~i  230 (283)
T COG5154         189 RC--YEIGRENED-----------------KSK--DVKLEEIGPRFVMTVIKILEGSFGGPAI  230 (283)
T ss_pred             EE--Eeecccccc-----------------ccc--cceeeeeccHHHHHHHHHHHhccCCcee
Confidence            99  677421110                 011  2699999999999999999999986544

>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

Probab=100.00  E-value=1.4e-32  Score=238.42  Aligned_cols=181  Identities=34%  Similarity=0.494  Sum_probs=170.5

Q ss_pred             CeEEEEecCCCCchHHHHHHHHHhcCCCcEEcccccccHHHHHHHHHhCCCcEEEEEEecCCCCCeEEEEec-CCCceEE
Q 024165           42 LYCLPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL-PDGPTAH  120 (271)
Q Consensus        42 pkilIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~~~t~lIi~~e~k~~p~~L~I~~l-P~GPT~~  120 (271)
                      ||+||||||+||+++|+|++||..++||+.+..||+.++.++.+.|...|.+++++++|.+|+|..|.++++ |.||++.
T Consensus         2 ~~~liTTSRkPS~Rtr~Fak~L~~~lp~~~~~~rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~~~~   81 (191)
T COG2136           2 PKMLLTTSRKPSRRTRSFAKDLSRVLPNAYFLRRGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGLTFS   81 (191)
T ss_pred             CcEEEEecCCccHHHHHHHHHHHHhCCcceEEecCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCceEE
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             EEEeceeehhhhccCCC-CCCCCceEEccCCCCchh-HHHHHHhhhh----CCCCCCCCCCeEEEEEecCCeEEEEeeee
Q 024165          121 FKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLG-HRVGRLIQSL----FPQSPEFRGRRVVTFHNQRDFIFFRHHRY  194 (271)
Q Consensus       121 F~I~n~~l~kdi~~~~~-~~~~~P~LI~nnF~t~~g-~~i~~~l~~l----Fp~~p~~~~rRVv~F~~~~d~I~fRhy~Y  194 (271)
                      |++.|+.+.+++...+. ...+.|++|++||++..+ +.+.++++.+    |++.+......|+.+.++++++.+|+|.|
T Consensus        82 f~l~~v~l~re~~~~~~~~~~~~~~~I~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~v~~~~~~~~f~~~~~~~~  161 (191)
T COG2136          82 FKLSGVKLRREIPVLGPKSRLHGPELIFNNFTTLLGFLKVAEAFSELLLVKFVPNPAWEHELVATGANKGDFKSLRRHRR  161 (191)
T ss_pred             EEEecceEEEeccccCCcccCCCCceeeecccccccchhhHHHHHhhcccccccCcccceeeeeeccccceEEEEEeeee
Confidence            99999999999999887 567899999999999988 8999999999    88877767899999999999999999999


Q ss_pred             EEEeccCCCCCCCCccccchhhhccccccceeeeEeeeceeEEEEEEeecccC
Q 024165          195 IFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTF  247 (271)
Q Consensus       195 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~L~EIGPRftLkL~kI~~G~~  247 (271)
                      .+...                         .++++|+||||+|++..+++|..
T Consensus       162 ~~~~~-------------------------~~~~~~vgp~~~~r~~~~~~g~~  189 (191)
T COG2136         162 VFEED-------------------------GIGLEEVGPRLTLRLWRMEDGRG  189 (191)
T ss_pred             Eeeee-------------------------eeeEEEeCceeeeehhhhhhccc
Confidence            98642                         25899999999999999999954

>PRK03972 ribosomal biogenesis protein; Validated

Probab=99.94  E-value=8.7e-26  Score=197.33  Aligned_cols=125  Identities=18%  Similarity=0.279  Sum_probs=114.9

Q ss_pred             EEEEecCCCCchHHHHHHHHHhcCCCcEEcccccccHHHHHHHHHhCCCcEEEEEEecCCCCCeEEEEecCC---CceEE
Q 024165           44 CLPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPD---GPTAH  120 (271)
Q Consensus        44 ilIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~~~t~lIi~~e~k~~p~~L~I~~lP~---GPT~~  120 (271)
                      +|||||++||+++++|++||..+|||+.+.+||+.+++|+++.|..+|+|++|+++|++|+|+.|.|+|+|.   |||++
T Consensus         2 iLITTSr~PS~rtr~F~keL~~v~Pns~~i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GPTa~   81 (208)
T PRK03972          2 MLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGYLGY   81 (208)
T ss_pred             EEEECCCCccHHHHHHHHHHHHhCCCCEEEecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCceEE
Confidence            799999999999999999999999999999999999999999999999999999999999999999999985   55999


Q ss_pred             EEEeceeehhhh--ccCCCCCCCCceEEccCCCCchhH-HHHHHhhhhCCC
Q 024165          121 FKLSKLVLRKDI--KNHGNPTGHIPELVLNNFATRLGH-RVGRLIQSLFPQ  168 (271)
Q Consensus       121 F~I~n~~l~kdi--~~~~~~~~~~P~LI~nnF~t~~g~-~i~~~l~~lFp~  168 (271)
                      |+|+|+.+.+||  +..+.++.+.|++|.++|.+..+. ..+..+.+.+..
T Consensus        82 FkLsnV~l~~ei~~~~~~~~s~~~p~iItts~kt~~g~~~~Ak~lA~eLgi  132 (208)
T PRK03972         82 LYLHGIKLQREMGFRNLRPIREDMPLVITTAKRVGLDHMAFAQVFAELTGG  132 (208)
T ss_pred             EEEccEEEHHHcccCCCCCccccccEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence            999999999999  457888899999999999998874 556666666665

>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=1.8e-12  Score=117.03  Aligned_cols=179  Identities=16%  Similarity=0.218  Sum_probs=143.2

Q ss_pred             cCCCCchHHHHHHHHHhcC-CCcEEccccccc-----HHHHHHHHHhCCCcEEEEEEecCCCCCeEEEEecCCCce---E
Q 024165           49 MLFILQRGPAFISELLSVI-PNSHYYKRGTYD-----LKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT---A  119 (271)
Q Consensus        49 Sr~ps~~~r~f~kdL~~l~-Pns~~~~R~k~~-----lkdl~~~a~~~~~t~lIi~~e~k~~p~~L~I~~lP~GPT---~  119 (271)
                      ....+..+..-+.||..+= |.+...+|+++.     -..+..+...++|+-+++.+.+++.|.+|.+++.-++-.   +
T Consensus        35 g~~~~~tl~~vm~dl~alKKp~~i~~~rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~nLv~gR~fd~~vlDMi  114 (307)
T KOG3031|consen   35 GMKTNKTLLDVMKDLYALKKPLEIRYNRKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPNNLVIGRTFDYEVLDMI  114 (307)
T ss_pred             chhhchHHHHHHHHHHHhccCceeeeccCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCCceEEEEecCchhhHHH
Confidence            4455678889999999984 999988887532     356788899999999999999999999999999988764   7


Q ss_pred             EEEEeceeehhhhccCCCCCCCCceEEccC--CCC-chhHHHHHHhhhhCCCCCC----C-CCCeEEEEEecCCe-EEEE
Q 024165          120 HFKLSKLVLRKDIKNHGNPTGHIPELVLNN--FAT-RLGHRVGRLIQSLFPQSPE----F-RGRRVVTFHNQRDF-IFFR  190 (271)
Q Consensus       120 ~F~I~n~~l~kdi~~~~~~~~~~P~LI~nn--F~t-~~g~~i~~~l~~lFp~~p~----~-~~rRVv~F~~~~d~-I~fR  190 (271)
                      .+.|.||...+|....+-..+..|.|+|+|  |.+ +..++++++|...|...+.    . .-++|+.|+..++. |+||
T Consensus       115 ElgI~~ykslsdF~~~k~~~gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl~~v~vfta~~~~~v~~r  194 (307)
T KOG3031|consen  115 ELGIENYKSLSDFKAAKITEGTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGLEYVIVFTATEETNVLFR  194 (307)
T ss_pred             HHhhhhhhhhhhhhccCCCCCCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccccEEEEEEeecCceeeee
Confidence            899999999999988765568999999997  554 4568999999999997322    2 35899999976554 9999


Q ss_pred             eeeeEEEeccCCCCCCCCccccchhhhccccccceeeeEeeeceeEEEEEEeecccC
Q 024165          191 HHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTF  247 (271)
Q Consensus       191 hy~Y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~L~EIGPRftLkL~kI~~G~~  247 (271)
                      ||+......+                    +...++.|.|+||+++|++.++.--.-
T Consensus       195 ~Y~lklkKs~--------------------~~~PRiELeE~GPsldf~irR~~~asd  231 (307)
T KOG3031|consen  195 VYRLKLKKSG--------------------TRTPRIELEEMGPSLDFEIRRTKLASD  231 (307)
T ss_pred             eeeeeeeecc--------------------CCCCceehhhcCCceeEEEEeccCCCH
Confidence            9665443222                    233568999999999999999876443

>PRK00933 ribosomal biogenesis protein; Validated

Probab=99.23  E-value=2.3e-10  Score=97.63  Aligned_cols=112  Identities=17%  Similarity=0.302  Sum_probs=84.0

Q ss_pred             EEEEecCCCCchHHHHHHHHHhcCCCcEEcccccccHHHHHHHHHhCCCcEEEEEEecCCCCCeEEEEecCCCceEEEEE
Q 024165           44 CLPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKL  123 (271)
Q Consensus        44 ilIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~~~t~lIi~~e~k~~p~~L~I~~lP~GPT~~F~I  123 (271)
                      ++||||++||.++++|+++|...+ |+.+.+|++.+++++++.|..   .++++++|++|+|+.|.|+..-..+.+.+.|
T Consensus         1 mIITTSrkPs~~t~~fAkeLa~~l-n~~yv~Rgk~Sl~eL~~~~~~---~~llVV~E~kg~P~~L~iyd~~~~~~~~~~~   76 (165)
T PRK00933          1 MIITTSRKPSQRTRSLVKDLARFL-NCKYVNRGKMSLQELLEECEA---RYLLIIGEYKGNPGALKFYDVEGNKLLSYRL   76 (165)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHh-CCEEEccCCccHHHHHHHhcc---CcEEEEECCCCCCceEEEEECCCCEEEEEEE
Confidence            489999999999999999999999 999999999999999877664   4999999999999999999988777776655


Q ss_pred             eceeehhhhccCCCCCCCCceEEccCCCCchhHHHHHHhhh
Q 024165          124 SKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQS  164 (271)
Q Consensus       124 ~n~~l~kdi~~~~~~~~~~P~LI~nnF~t~~g~~i~~~l~~  164 (271)
                       ++.+.++.... ......|.+.  ++.. .+..++++|..
T Consensus        77 -~v~~~~~~~~~-~~~~~~p~~~--~~~~-~~~~~~e~f~~  112 (165)
T PRK00933         77 -SVKLQREISGP-VFKNRRPIKS--AFDV-GGDELAELFDY  112 (165)
T ss_pred             -EeeeecccCcc-eeecCCCccc--chhh-HHHHHHHHHHH
Confidence             35665555431 2234445332  2221 14455555554

>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=4.8e-06  Score=74.46  Aligned_cols=174  Identities=17%  Similarity=0.223  Sum_probs=125.4

Q ss_pred             chHHHHHHHHHhc-CCCcEEccccccc-----HHHHHHHHHhCCCcEEEEEEecCCCCCeEEEEecCCCc---eEEEEEe
Q 024165           54 QRGPAFISELLSV-IPNSHYYKRGTYD-----LKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP---TAHFKLS  124 (271)
Q Consensus        54 ~~~r~f~kdL~~l-~Pns~~~~R~k~~-----lkdl~~~a~~~~~t~lIi~~e~k~~p~~L~I~~lP~GP---T~~F~I~  124 (271)
                      +.+...+=|+..+ .|....+.|++.-     ..-+--+.+.++|+-.++++..++.+..|.+++.-+--   .+.|.|.
T Consensus        40 k~lldvi~d~~alkkp~~i~f~rkn~ihpfEd~SplEffseknd~~l~vl~ts~kKr~hnlt~~R~Fny~~~DMiEl~i~  119 (316)
T COG5106          40 KTLLDVICDTEALKKPKEIGFIRKNTIHPFEDTSPLEFFSEKNDKKLSVLFTSVKKRRHNLTIGRAFNYELIDMIELKIN  119 (316)
T ss_pred             hhhhhhhcchhhhccchhhccccCCcccccccCCHHHHHHHhhhhhhhhhhhhccccccceeEEeecchHHHHHHHHhhh
Confidence            3456666677666 3777777776422     23456677889999999999999989889998876543   3678899


Q ss_pred             ceeehhhhccCCCCCCCCceEEccC--CCC-chhHHHHHHhhhhCCCCCC--C---CCCeEEEEEec----CCe----EE
Q 024165          125 KLVLRKDIKNHGNPTGHIPELVLNN--FAT-RLGHRVGRLIQSLFPQSPE--F---RGRRVVTFHNQ----RDF----IF  188 (271)
Q Consensus       125 n~~l~kdi~~~~~~~~~~P~LI~nn--F~t-~~g~~i~~~l~~lFp~~p~--~---~~rRVv~F~~~----~d~----I~  188 (271)
                      +|....|....+...+..|.++|.|  |++ |.-++|+.+|-..|...+.  .   .-..|++-+.+    +.+    +.
T Consensus       120 ~yksvsdF~~~~~~~g~Kpmv~fQg~~fd~hp~yr~iksLflDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp~v~  199 (316)
T COG5106         120 RYKSVSDFECAGPELGMKPMVVFQGINFDAHPTYRRIKSLFLDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLPLVV  199 (316)
T ss_pred             hhhehhhhhccCCccCCceEEEEeccccccchHHHHHHHHHHHHHcCCchhhhhhcceeEEEEEecchhhhcccccccee
Confidence            9999999988777778899999975  874 5669999999999997542  1   22577777743    222    57


Q ss_pred             EEeeeeEEEeccCCCCCCCCccccchhhhccccccceeeeEeeeceeEEEEEEeecccC
Q 024165          189 FRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTF  247 (271)
Q Consensus       189 fRhy~Y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~L~EIGPRftLkL~kI~~G~~  247 (271)
                      ||-|  ....-..+                  +.-.++.|.|+|||+.+++.++.--+-
T Consensus       200 fRVy--k~k~~kt~------------------~~lpr~elee~GPrldf~i~R~~~~s~  238 (316)
T COG5106         200 FRVY--KTKLLKTK------------------TNLPRLELEECGPRLDFEIVRSYHCSD  238 (316)
T ss_pred             eeee--eccccccc------------------CCCCceehhhcccceeeEEEeecCCCh
Confidence            8884  32211111                  123467999999999999999986444

>PRK03972 ribosomal biogenesis protein; Validated

Probab=94.82  E-value=0.21  Score=44.37  Aligned_cols=78  Identities=19%  Similarity=0.192  Sum_probs=58.4

Q ss_pred             CCeEEEEecCCCCchHHHHHHHHHhcCCCcEEcccccccHHHHHHHHHhCCCcEEEEEEecCCCCCeEEEEec------C
Q 024165           41 FLYCLPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL------P  114 (271)
Q Consensus        41 ~pkilIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~~~t~lIi~~e~k~~p~~L~I~~l------P  114 (271)
                      .| .+|||+.+++...+..++.+...+ +..+.+|++.++.++.   ...+...++++..+-.+ ..+.++++      |
T Consensus       105 ~p-~iItts~kt~~g~~~~Ak~lA~eL-gi~yV~R~k~Sl~~L~---~~~~~d~vLVV~~~~~~-~~~~~~~~~~~~~~~  178 (208)
T PRK03972        105 MP-LVITTAKRVGLDHMAFAQVFAELT-GGKFVPRGGKSLQDIA---DKYNTDVLGVIERHPRG-MAVNFYRLDVTKERP  178 (208)
T ss_pred             cc-EEEEcCCCCCHHHHHHHHHHHHHh-CCceeCcCCcCHHHHH---hhhcCceEEEEecCCCc-eEEEEEEeccccccc
Confidence            44 589999999998888899987765 7778899999998776   44567888888665433 24666664      6


Q ss_pred             CCceEEEEEe
Q 024165          115 DGPTAHFKLS  124 (271)
Q Consensus       115 ~GPT~~F~I~  124 (271)
                      -||.+..++-
T Consensus       179 ~~~~~~~~~~  188 (208)
T PRK03972        179 VGPLIFVKIW  188 (208)
T ss_pred             cCCcEEEEEE
Confidence            7999887764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	2e-53
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	4e-07

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2 Length = 217

 Score =  172 bits (436), Expect = 2e-53
 Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 14/155 (9%)

Query: 54  QRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL 113
            R  +F+ +L + IP +  + RG Y ++++   A  +    I+VV   R  P  ++ +  
Sbjct: 46  PRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRGNP-GIIRVYA 104

Query: 114 PDGP-----TAHFKLSKLVLRKDIKNHGNPTGHIPELVL-----NNFATRLGHRVGRLIQ 163
            +GP        F +  + L ++ +  G P+    E+++     +  A            
Sbjct: 105 VEGPERPDNIVSFIVKGVSLSRERR-WGLPSLRGGEVLVARPLDSGVAVEFADAFVIAFH 163

Query: 164 SLFPQSPE--FRGRRVVTFHNQRDFIFFRHHRYIF 196
           +         +    + +   +   + FR+     
Sbjct: 164 ARLKPPEAAGYVEAVIESLDARTVAVTFRYGGAPV 198

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2 Length = 156

 Score = 47.7 bits (113), Expect = 4e-07
 Identities = 19/162 (11%), Positives = 43/162 (26%), Gaps = 17/162 (10%)

Query: 54  QRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL 113
           QR  +F   L  ++    Y  RG   L+ ++  A+      + VV      P  +  +  
Sbjct: 12  QRTRSFSQRLSRIM-GWRYINRGKMSLRDVLIEARGP----VAVVSERHGNPARITFL-D 65

Query: 114 PDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFR 173
             G    + L                    + V  +        +  L+     +S    
Sbjct: 66  ERGGERGYILFNPSFEMKK------PELADKAVRVSSCPPGSEGLCNLMGLEVDESS--- 116

Query: 174 GRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAK 215
            R   +     ++ +      +       G     +  +  +
Sbjct: 117 SRDAWSIRTDEEYAWVMEL--MDARGTPAGFKLLIRDFRVGE 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	99.97
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	99.82

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2

Probab=99.97  E-value=5.4e-31  Score=231.93  Aligned_cols=131  Identities=15%  Similarity=0.162  Sum_probs=125.4

Q ss_pred             CCCeEEEEecCCCCchHHHHHHHHHhcCCCcEEcccccccHHHHHHHHHhCCCcEEEEEEecCCCCCeEEEEecCCC---
Q 024165           40 HFLYCLPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDG---  116 (271)
Q Consensus        40 ~~pkilIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~~~t~lIi~~e~k~~p~~L~I~~lP~G---  116 (271)
                      ..||+||||||+||+++++|++||+.+|||+.+.+|++.++++|++.|..++|+++++++|++++|++|||+|+|+|   
T Consensus        32 ~~pKvLITTSr~pS~r~r~fakeL~~~lPns~~i~Rgk~sLkeL~e~a~~~~~tdlivV~e~rg~p~~L~~~hlP~G~~~  111 (217)
T 2cxh_A           32 GGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVEGPERP  111 (217)
T ss_dssp             -CCEEEEEESSSCCHHHHHHHHHHHTTSTTEEECCCTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCSSSCC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHHHCCCCEEeecCCcCHHHHHHHHHhCCCCEEEEEEecCCCCcEEEEEECCCCCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             c-eEEEEEeceeehhhhccCCCC-CCCCceEEccCCCCchhHHHHHHhhhhCCCCCCC
Q 024165          117 P-TAHFKLSKLVLRKDIKNHGNP-TGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEF  172 (271)
Q Consensus       117 P-T~~F~I~n~~l~kdi~~~~~~-~~~~P~LI~nnF~t~~g~~i~~~l~~lFp~~p~~  172 (271)
                      | |++|+|.|+++++|++.++++ ..++|+|+ +||+++++++++++|++|||. |..
T Consensus       112 P~Ta~F~I~nv~l~~ei~~~g~~~~~~rP~L~-~nF~t~~g~~i~~~f~~lFp~-P~~  167 (217)
T 2cxh_A          112 DNIVSFIVKGVSLSRERRWGLPSLRGGEVLVA-RPLDSGVAVEFADAFVIAFHA-RLK  167 (217)
T ss_dssp             EEEEEEEEEEEECHHHHTCCCCCCCSCCEEEE-EESSSSTHHHHHHHHHHHHCC-BSS
T ss_pred             CcEEEEEEeeEEehhhhccCCCccCCCCceEE-eeecCchHHHHHHHHHHHcCC-CCC
Confidence            9 999999999999999999977 47899999 999999999999999999998 654

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2

Probab=99.82  E-value=8.7e-20  Score=153.09  Aligned_cols=129  Identities=14%  Similarity=0.168  Sum_probs=105.4

Q ss_pred             eEEEEecCCCCchHHHHHHHHHhcCCCcEEcccccccHHHHHHHHHhCCCcEEEEEEecCCCCCeEEEEecCCCceEEEE
Q 024165           43 YCLPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFK  122 (271)
Q Consensus        43 kilIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~~~t~lIi~~e~k~~p~~L~I~~lP~GPT~~F~  122 (271)
                      |++||||++||+++++|+++|..++ |+.+.+|++.+++++++.|...    +++++|++|+|+.|.++|+|.|||++|+
T Consensus         1 kilITTSr~Ps~~l~~fakeLa~~l-n~~~v~Rgk~sl~~L~~~~~~~----~iVV~e~rg~P~~l~i~hlp~gpt~~f~   75 (156)
T 1w94_A            1 HMLLTTSRKPSQRTRSFSQRLSRIM-GWRYINRGKMSLRDVLIEARGP----VAVVSERHGNPARITFLDERGGERGYIL   75 (156)
T ss_dssp             CCEEEECSSCCHHHHHHHHHHHHHH-TCEECCCTTCCHHHHHHHHSSC----EEEEEEETTEEEEEEEECTTSCEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHh-CCEEEeeCCcCHHHHHHhcCCC----EEEEEcCCCCCCeEEEEeCCCCCEEEEE
Confidence            5799999999999999999999999 9999999999999999998543    9999999999999999999999999999


Q ss_pred             EeceeehhhhccCCCCCCCCceEEccCCCCchhHHHHHHhhhhCCCCCCCCCCeEEEEEecCCe
Q 024165          123 LSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDF  186 (271)
Q Consensus       123 I~n~~l~kdi~~~~~~~~~~P~LI~nnF~t~~g~~i~~~l~~lFp~~p~~~~rRVv~F~~~~d~  186 (271)
                      + |+.+.+|++...      |..|...++++.+..+.++|.  ||. .+...++|+.+..+++.
T Consensus        76 ~-nv~l~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--~~~-~~~~~~~~~~i~~~~~~  129 (156)
T 1w94_A           76 F-NPSFEMKKPELA------DKAVRVSSCPPGSEGLCNLMG--LEV-DESSSRDAWSIRTDEEY  129 (156)
T ss_dssp             E-EEEECSSCCCCS------SCCCEESCCCTTCHHHHHHHT--CEE-CCSCCTTEEEEECCSSS
T ss_pred             E-ceEEcccCcccC------CceEEEecCChhHHHHHHHHC--CCc-cCCCCceEEEEEeCCCc
Confidence            8 999999987321      333444456777766677666  344 22345678888744443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	271
d2cxha1	180	c.51.1.2 (A:13-192) Probable ribosomal biogenesis	3e-50
d1w94a1	154	c.51.1.2 (A:1-154) Probable ribosomal biogenesis p	7e-39

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 180

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score =  161 bits (409), Expect = 3e-50
 Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 11/153 (7%)

Query: 54  QRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL 113
            R  +F+ +L + IP +  + RG Y ++++   A  +    I+VV   R  P  ++ +  
Sbjct: 14  PRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRGNPG-IIRVYA 72

Query: 114 PDGP-----TAHFKLSKLVLRKDIK----NHGNPTGHIPELVLNNFATRLGHRVGRLIQS 164
            +GP        F +  + L ++ +    +       +   + +  A            +
Sbjct: 73  VEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDSGVAVEFADAFVIAFHA 132

Query: 165 LFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFE 197
                PE  G       +          RY   
Sbjct: 133 RLKP-PEAAGYVEAVIESLDARTVAVTFRYGGA 164

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  131 bits (331), Expect = 7e-39
 Identities = 19/140 (13%), Positives = 36/140 (25%), Gaps = 17/140 (12%)

Query: 54  QRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL 113
           QR  +F   L  ++    Y  RG   L+ ++  A       + VV      P  +  +  
Sbjct: 11  QRTRSFSQRLSRIMGWR-YINRGKMSLRDVLIEA----RGPVAVVSERHGNPARITFL-D 64

Query: 114 PDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFR 173
             G    + L                   PEL                + +L     +  
Sbjct: 65  ERGGERGYILFNPSFEMKK----------PELADKAVRVSSCPPGSEGLCNLMGLEVDES 114

Query: 174 GRR-VVTFHNQRDFIFFRHH 192
             R   +     ++ +    
Sbjct: 115 SSRDAWSIRTDEEYAWVMEL 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	271
d2cxha1	180	Probable ribosomal biogenesis protein {Archaeon Ae	100.0
d1w94a1	154	Probable ribosomal biogenesis protein {Methanobact	99.97

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=1.9e-40  Score=283.05  Aligned_cols=151  Identities=17%  Similarity=0.223  Sum_probs=143.4

Q ss_pred             CeEEEEecCCCCchHHHHHHHHHhcCCCcEEcccccccHHHHHHHHHhCCCcEEEEEEecCCCCCeEEEEecCCCc----
Q 024165           42 LYCLPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP----  117 (271)
Q Consensus        42 pkilIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~~~t~lIi~~e~k~~p~~L~I~~lP~GP----  117 (271)
                      .|||||||++||+++++|++||+.+|||+.+.+|++++++|+++.|..+||||+|+|+|++|+| +|+++++|.||    
T Consensus         2 ~kvLITTSr~ps~~~r~f~kdL~~v~Pns~~~~R~k~~lk~i~~~a~~~~~t~liiv~e~~~~p-~l~i~~lP~GP~~~~   80 (180)
T d2cxha1           2 YRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRGNP-GIIRVYAVEGPERPD   80 (180)
T ss_dssp             CEEEEEESSSCCHHHHHHHHHHHTTSTTEEECCCTTCCHHHHHHHHHHTTEEEEEEEEEETTEE-EEEEEEECCSSSCCE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhCCCCEEeecCCCcHHHHHHHHHHCCCCeEEEEEccCCCC-cEEEEECCCCCCCcc
Confidence            4899999999999999999999999999999999999999999999999999999999999999 59999999999    


Q ss_pred             -eEEEEEeceeehhhhccC----CCCCCCCceEEccCCCCchhHHHHHHhhhhCCCCCCCCCCeEEEEEecCCeEEEEee
Q 024165          118 -TAHFKLSKLVLRKDIKNH----GNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHH  192 (271)
Q Consensus       118 -T~~F~I~n~~l~kdi~~~----~~~~~~~P~LI~nnF~t~~g~~i~~~l~~lFp~~p~~~~rRVv~F~~~~d~I~fRhy  192 (271)
                       |++|+|.|+.+.+|++..    +....+.|++|+|||+|++|+++.++|+++||. |+..+++|++|++++|+|++|+|
T Consensus        81 ~t~~F~l~nv~l~~e~~~~~~~~~~~t~~~p~lilnnf~t~Lg~~~~~~f~~lf~~-p~~~~~~vvt~~n~~d~if~~~~  159 (180)
T d2cxha1          81 NIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDSGVAVEFADAFVIAFHARLKP-PEAAGYVEAVIESLDARTVAVTF  159 (180)
T ss_dssp             EEEEEEEEEEECHHHHTCCCCCCCSCCEEEEEESSSSTHHHHHHHHHHHHCCBSSC-CSSSCEEEEEEEEEETTEEEEEE
T ss_pred             ceEEEEEEEEEEehhhccccCCCCCCccccchhHhcccchHHHHHHHHHHHhhCCC-chhcCcEEEEEEecCCeEEEEEE
Confidence             999999999999999653    445678999999999999999999999999998 88889999999999999999999


Q ss_pred             ee
Q 024165          193 RY  194 (271)
Q Consensus       193 ~Y  194 (271)
                      +|
T Consensus       160 ~~  161 (180)
T d2cxha1         160 RY  161 (180)
T ss_dssp             EC
T ss_pred             ec
Confidence            87

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.97  E-value=5.7e-32  Score=223.87  Aligned_cols=133  Identities=15%  Similarity=0.139  Sum_probs=124.6

Q ss_pred             EEEEecCCCCchHHHHHHHHHhcCCCcEEcccccccHHHHHHHHHhCCCcEEEEEEecCCCCCeEEEEecCCCceEEEEE
Q 024165           44 CLPVYMLFILQRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKL  123 (271)
Q Consensus        44 ilIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~~~t~lIi~~e~k~~p~~L~I~~lP~GPT~~F~I  123 (271)
                      +|||||++||+++++|++||..++||+ +.+||+.+++|+++.|    ++++++++|++|+|+.|.| |+|.|||++|.+
T Consensus         1 vLITTSr~PS~rtr~F~keL~~i~P~~-~~~Rgk~~lkelv~~~----~tdlivv~E~rg~P~~l~i-h~p~gpt~~f~l   74 (154)
T d1w94a1           1 MLLTTSRKPSQRTRSFSQRLSRIMGWR-YINRGKMSLRDVLIEA----RGPVAVVSERHGNPARITF-LDERGGERGYIL   74 (154)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHHHHTCE-ECCCTTCCHHHHHHHH----SSCEEEEEEETTEEEEEEE-ECTTSCEEEEEE
T ss_pred             CEEECCCCccHHHHHHHHHHHHhCCCe-EEEcCCCcHHHHHHhC----CCcEEEEECCCCCCceEEE-EeCCCCcEEEEE
Confidence            589999999999999999999999985 8999999999999887    5899999999999999988 999999999999


Q ss_pred             eceeehhhhccCCCCCCCCceEEccCCCCchhHHHHHHhhhhCCCCCCCCCCe-EEEEEecCCeEEEEee
Q 024165          124 SKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRR-VVTFHNQRDFIFFRHH  192 (271)
Q Consensus       124 ~n~~l~kdi~~~~~~~~~~P~LI~nnF~t~~g~~i~~~l~~lFp~~p~~~~rR-Vv~F~~~~d~I~fRhy  192 (271)
                      .|+.+.+|          +|+++++||.+.+|..++++|+++||..|..+++| |++|++++|+|+++||
T Consensus        75 ~~v~l~~e----------~p~li~~~f~t~lg~~v~~~L~~lf~~~~~~~~~~~~itf~n~~d~i~~~~~  134 (154)
T d1w94a1          75 FNPSFEMK----------KPELADKAVRVSSCPPGSEGLCNLMGLEVDESSSRDAWSIRTDEEYAWVMEL  134 (154)
T ss_dssp             EEEEECSS----------CCCCSSCCCEESCCCTTCHHHHHHHTCEECCSCCTTEEEEECCSSSSEEEEE
T ss_pred             eeEEcccc----------CCcCcccccccccchhHHHHHHHHcCCChhhcceeeEEEEecCCCEEEEEEE
Confidence            99998754          79999999999999999999999999977777665 9999999999999996