Citrus Sinensis ID: 024177

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI
Secondary Structure (PSIPRED)
ccEEEEEEEcccccEEEEEEEEEccccccEEEEEEEcccccEEEEEEEEEccccEEEEEEEEEEEcEEEEEEEEEEccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccccccccccccccccccccEEEEEEEEEEEEEccccEEEcccccccccccccccccccccEEEEEEEEccEEEEEEEcccccEEcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcccccEEEEEEEEEccccccEEEEEEEEEcEEEEEEccEEEEccEEEEEEEEEEccccEEEEEEEEEccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccccEEEEEEEHHHHHcccccEEEcccccccccccccccccccccEEEEEEEEcccEEEEEEcccccEEcccccccc
Coil and Loop (DISEMBL)
msaagelkigtssfgasahythrfskkshgriqgrlGSTALELevgggrkiseFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLsrhfssffatgafiiPASVYFLLKKFILKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKALTKlgetgessdELASQVLDvtlplnflvndsgrlklhdgvkksgimgfcdscpgepkqlYVEYTYggnryevfvddyeelfipqeahri
Flexible Loop (DISEMBL)
msaagelkigtssfgasahythrfskkshgriqgRLGSTALELEVGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANrkrnkqleiggliitkavYGARKALTKlgetgessdELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI
Low Complexity Region (SEG)
MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQKALENMEKTSaqvqeakaaaqkaqqllqnvanRKRNKQLEIGGLIITKAVYGARKALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI
Disordered region (IsUnstruct)
**********************************RLGSTALELEVGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLK*****************************************QLEIGGLIITKAVYGARKALTKL*********LASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQLYVEYTYGGNRYEVFVDDYEELFI*******
Disordered Region (DISOPRED)
**AAGELKIGTSSFGASAHYTHRFS*******QGRLGSTALELEVGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPY********************************L***************GGLIITKAVYGA********************VLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQLYVEYTYGGNRYEVFVDDYEELFIPQEAHR*
Disordered Region (DISEMBL)
MSAAGELKIGTSSFGASAHYTHR*********QGRLGSTALELEVGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQKALENM*****************QQLLQNVANRKRNKQLEIGGLIITKAVYGARKALTKL********ELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI
Disordered Region (DISPRO)
MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKA**************ASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQLYVEYTYGGNRYEVFVDDYEELFIPQ*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIGGLIITKAVYGARKALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
Q39079	538	Chaperone protein dnaJ 13	yes	no	0.981	0.494	0.669	1e-105
Q9NVH1	559	DnaJ homolog subfamily C	yes	no	0.929	0.450	0.356	2e-28
Q5RC70	559	DnaJ homolog subfamily C	yes	no	0.929	0.450	0.352	4e-28
Q5U458	559	DnaJ homolog subfamily C	yes	no	0.929	0.450	0.349	2e-27
Q2NL21	559	DnaJ homolog subfamily C	yes	no	0.929	0.450	0.341	5e-26
Q54PV9	575	DnaJ homolog subfamily C	yes	no	0.811	0.382	0.339	1e-23
Q9Y7T0	612	Uncharacterized J domain-	yes	no	0.822	0.364	0.277	8e-15

>sp|Q39079|DNJ13_ARATH Chaperone protein dnaJ 13 OS=Arabidopsis thaliana GN=ATJ13 PE=1 SV=2

 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/269 (66%), Positives = 217/269 (80%), Gaps = 3/269 (1%)

Query: 1   MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRML 60
           +SAAG+ KI +   GASA YT + S KSHGRI GR+GS ALE+E+GGGR+ISEFST+RM+
Sbjct: 273 VSAAGDFKIESGGLGASARYTRKLSSKSHGRIVGRIGSNALEIELGGGRQISEFSTVRMM 332

Query: 61  YSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYL 120
           Y+VG++GIFWK ELHR  QKL+VPILLS H +  FATGAFI+P S+YFLLKKF++KPY L
Sbjct: 333 YTVGLKGIFWKVELHRGSQKLIVPILLSAHLAPVFATGAFIVPTSLYFLLKKFVVKPYLL 392

Query: 121 KREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARK 180
           KREKQKALENMEKT  QV EA+A A+KAQQLLQ VA RK+N+Q+E  GLI+TKA+YG  K
Sbjct: 393 KREKQKALENMEKTWGQVGEARARAEKAQQLLQTVATRKKNRQVETDGLIVTKALYGDPK 452

Query: 181 ALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQ 240
           A+ +  E  E  D   S V+DVT+P+NFLV+DSG+LKLH+GVKKSGIMGFCD CPG+PKQ
Sbjct: 453 AIERRNEGVEGLD---SGVIDVTVPMNFLVSDSGQLKLHEGVKKSGIMGFCDPCPGQPKQ 509

Query: 241 LYVEYTYGGNRYEVFVDDYEELFIPQEAH 269
           LY+ YTY    +EV V DYEEL IPQE  
Sbjct: 510 LYIAYTYHSQPFEVIVGDYEELSIPQEGQ 538

Have a continuous role in plant development probably in the structural organization of compartments (By similarity). Seems to be involved in resistance to oxidative stresses mediated by thiol-oxidizing agents such as diamide.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9NVH1|DJC11_HUMAN DnaJ homolog subfamily C member 11 OS=Homo sapiens GN=DNAJC11 PE=1 SV=2

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/272 (35%), Positives = 144/272 (52%), Gaps = 20/272 (7%)

Query: 7   LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
           L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    SVG
Sbjct: 297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSVG 356

Query: 65  I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
           + QG+  K +L+RA Q    PI L+      + F+AT   + P  VYF + + I+KP YL
Sbjct: 357 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAMFYAT---VGPLVVYFAMHRLIIKP-YL 412

Query: 121 KREKQKALENMEKTSA-QVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGAR 179
           + +K+K LE   +++A  V + K  A+ A +L+Q    R    +    GLII  A YG  
Sbjct: 413 RAQKEKELEKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472

Query: 180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPK 239
                + +    S+++  +V+DVT+PL  LV DS +L L +   K+G+ GF D C GE K
Sbjct: 473 -----VNDKSRKSEKV--KVIDVTVPLQCLVKDS-KLILTEA-SKAGLPGFYDPCVGEEK 523

Query: 240 QLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271
            L V Y + G  ++V V D E L IP+++HRI
Sbjct: 524 NLKVLYQFRGVLHQVMVLDSEALRIPKQSHRI 555

Homo sapiens (taxid: 9606)

>sp|Q5RC70|DJC11_PONAB DnaJ homolog subfamily C member 11 OS=Pongo abelii GN=DNAJC11 PE=2 SV=1

 Score =  125 bits (313), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/272 (35%), Positives = 143/272 (52%), Gaps = 20/272 (7%)

Query: 7   LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
           L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    S+G
Sbjct: 297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSIG 356

Query: 65  I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
           + QG+  K +L+RA Q    PI L+      + F+AT     P  VYF + + I+KP YL
Sbjct: 357 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYATMG---PLVVYFAMHRLIIKP-YL 412

Query: 121 KREKQKALENMEKTSA-QVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGAR 179
           + +K+K LE   +++A  V + K  A+ A +L+Q    R    +    GLII  A YG  
Sbjct: 413 RAQKEKELEKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472

Query: 180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPK 239
                + +    S+++  +V+DVT+PL  LV DS +L L +   K+G+ GF D C GE K
Sbjct: 473 -----VNDKSRKSEKV--KVIDVTVPLQCLVKDS-KLILTEA-SKAGLPGFYDPCVGEEK 523

Query: 240 QLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271
            L V Y + G  ++V V D E L IP+++HRI
Sbjct: 524 NLKVLYQFRGVLHQVMVLDSEALRIPKQSHRI 555

Pongo abelii (taxid: 9601)

>sp|Q5U458|DJC11_MOUSE DnaJ homolog subfamily C member 11 OS=Mus musculus GN=Dnajc11 PE=2 SV=2

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 140/272 (51%), Gaps = 20/272 (7%)

Query: 7   LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
           L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    S+G
Sbjct: 297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTIVEYGAERKISRHSVLGAAVSIG 356

Query: 65  I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
           + QG+  K +L+RA Q    PI L+      + F+AT   + P  VY  + + I++PY L
Sbjct: 357 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYAT---VGPLVVYLAVHRLIIRPY-L 412

Query: 121 KREKQKALENM-EKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGAR 179
           + +K+K LE   E T++ + + K  A+ A +L+Q    R    +    GLII  A YG  
Sbjct: 413 RAQKEKELEKQRENTASDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYG-- 470

Query: 180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPK 239
           K +       E       +V+DVT+PL  LV DS +L L +   K+G+ GF D C GE K
Sbjct: 471 KFVNDKSRKNEK-----VKVIDVTVPLQCLVKDS-KLILTEA-SKAGLPGFYDPCVGEEK 523

Query: 240 QLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271
            L V Y + G  ++V V D E L IP+++HRI
Sbjct: 524 SLRVLYQFRGVLHQVMVPDSEALRIPKQSHRI 555

Mus musculus (taxid: 10090)

>sp|Q2NL21|DJC11_BOVIN DnaJ homolog subfamily C member 11 OS=Bos taurus GN=DNAJC11 PE=2 SV=1

 Score =  118 bits (295), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/272 (34%), Positives = 137/272 (50%), Gaps = 20/272 (7%)

Query: 7   LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
           L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    S+G
Sbjct: 297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSIG 356

Query: 65  I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
           + QG+  K +L+RA Q    PI L+      + F+AT     P  +YF L + +++PY L
Sbjct: 357 VPQGVSLKIKLNRASQTYFFPIHLTDQLLPSAVFYATAG---PLVLYFALHRLVIRPY-L 412

Query: 121 KREKQKALENM-EKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGAR 179
           + +K+K LE   E T+  + + K  A+ A +L+Q    R    +    GLII  A YG  
Sbjct: 413 RAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472

Query: 180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPK 239
                     +S      +V+DVT+PL  LV DS +L L +   K+G+ GF D C GE K
Sbjct: 473 V-------NDKSKKSEKVKVIDVTVPLQCLVKDS-KLILTEA-SKAGLPGFYDPCVGEEK 523

Query: 240 QLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271
            L V Y + G  ++V   D E L IP+++HRI
Sbjct: 524 NLKVLYQFRGVLHQVMALDSEALRIPKQSHRI 555

Bos taurus (taxid: 9913)

>sp|Q54PV9|DJC11_DICDI DnaJ homolog subfamily C member 11 homolog OS=Dictyostelium discoideum GN=dnajc11 PE=3 SV=1

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 119/230 (51%), Gaps = 10/230 (4%)

Query: 45  VGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPA 104
           +G  RKI++   I +   V      +   LH   Q L +PI +    S   +   F +PA
Sbjct: 352 IGFKRKITKVFDIDLSMHVNPSRYLYVIGLHHRYQSLEIPIPIYSDLSLSTSLLFFTLPA 411

Query: 105 SVYFLLKKFILKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQL 164
               LLK  ++KP   K+E++K +E  EK + Q ++AK  A+    L++ +   K  K+ 
Sbjct: 412 VTLSLLKYLVVKPLMKKKEQKKIMEKKEKYADQARKAKRKAEMDITLVKQLVENKVLKEK 471

Query: 165 EIGGLIITKAVYGARKALTKLGETGESSDELASQ---VLDVTLPLNFLVNDSGRLKLHDG 221
              GLII +AVYG      KL E  + SD  + +    +DVT+PL +LV DS +L LH  
Sbjct: 472 TKNGLIIQEAVYG------KLDEKVDHSDPFSVEFPPTIDVTIPLQYLVEDS-KLVLHGN 524

Query: 222 VKKSGIMGFCDSCPGEPKQLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271
            KKS ++GF D    E KQL V Y +    + + V+D ++L IP ++H I
Sbjct: 525 NKKSDLLGFWDPRISEEKQLKVTYFFQNRLHRITVNDIDQLLIPLKSHLI 574

Dictyostelium discoideum (taxid: 44689)

>sp|Q9Y7T0|YCJ3_SCHPO Uncharacterized J domain-containing protein C63.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC63.03 PE=3 SV=2

 Score = 81.3 bits (199), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 115/238 (48%), Gaps = 15/238 (6%)

Query: 38  STALELEVGG--GRKISEFSTIRMLYSVGIQ--GIFWKFELHRAGQKLVVPILLSRHFSS 93
           ST   L+V G   RK+  +ST  +  SVG+    I +     R GQK+ +PI+    F  
Sbjct: 384 STVGGLQVSGDTSRKVGRYSTFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDR 443

Query: 94  FFATGAFIIPASVYFLLKKFILKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQ 153
                  + P +    +++F L+P  L  +K+  L  ++K     +  K +A +A +L++
Sbjct: 444 SAVFWGLVFPITSILGVEQFFLRPRRLSNQKRLRLLRLQKLKDSQERKKVSAIRAVKLMK 503

Query: 154 NVANRKRNKQLEIGGLIITKAVYGARKALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
            +  +K+  ++E GGL+I  A Y       ++   G +  +L     DVT+ +  LV +S
Sbjct: 504 EIVEKKQKLEMEKGGLVIEYAEY-------RVVNCGANEPDLKQ---DVTISIAALVENS 553

Query: 214 GRLKLHDGVKKSGIMGFCDSCPGEPKQLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271
            RL +   V KS I+G         K+L + YT+   R+ V + D + +F+P   H+I
Sbjct: 554 -RLAIPSSVSKSSIIGIYPLFSDNEKELEIVYTFHQQRHRVVLRDKQGVFLPSREHKI 610

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
225426989	537	PREDICTED: chaperone protein dnaJ 13 [Vi	0.985	0.497	0.788	1e-127
255576058	542	Chaperone protein dnaJ, putative [Ricinu	1.0	0.5	0.771	1e-123
224138588	540	predicted protein [Populus trichocarpa]	1.0	0.501	0.738	1e-119
449504996	539	PREDICTED: chaperone protein dnaJ 13-lik	0.977	0.491	0.762	1e-117
449458944	456	PREDICTED: chaperone protein dnaJ 13-lik	0.970	0.576	0.758	1e-115
224074151	539	predicted protein [Populus trichocarpa]	0.977	0.491	0.713	1e-110
356497147	540	PREDICTED: chaperone protein dnaJ 13-lik	0.996	0.5	0.685	1e-109
242034011	540	hypothetical protein SORBIDRAFT_01g01759	0.992	0.498	0.643	1e-104
297823375	537	J-domain protein [Arabidopsis lyrata sub	0.981	0.495	0.672	1e-104
928936	539	J-domain protein [Arabidopsis thaliana]	0.985	0.495	0.669	1e-103

>gi|225426989|ref|XP_002270066.1| PREDICTED: chaperone protein dnaJ 13 [Vitis vinifera] gi|297741195|emb|CBI31926.3| unnamed protein product [Vitis vinifera]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/270 (78%), Positives = 241/270 (89%), Gaps = 3/270 (1%)

Query: 1   MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRML 60
           MSA+GELK GTSSFGA+A Y  RFS KSHGRI GR+GS+ALE+EVGGGRK+S+FST+RML
Sbjct: 270 MSASGELKFGTSSFGATASYIRRFSSKSHGRIAGRVGSSALEIEVGGGRKLSDFSTVRML 329

Query: 61  YSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYL 120
           YS+GIQGI+WK E HR GQKL++PILLSR   + FATGAF+IP S+YFLLKKFI+KPYYL
Sbjct: 330 YSIGIQGIYWKIEFHRGGQKLIIPILLSRQLDTVFATGAFMIPTSIYFLLKKFIVKPYYL 389

Query: 121 KREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARK 180
           +REKQK LEN+EKTS QVQEA+AAA+KAQQLLQNVANRKRN+QLE GGL+ITKAVYG RK
Sbjct: 390 RREKQKKLENIEKTSVQVQEARAAAEKAQQLLQNVANRKRNRQLETGGLVITKAVYGNRK 449

Query: 181 ALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQ 240
           AL    E GE  D+LASQV+DVTLPLNFLVNDSG+LKLH+GVKKSGIMGFCD CPGEPKQ
Sbjct: 450 ALN---EPGEGDDQLASQVVDVTLPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGEPKQ 506

Query: 241 LYVEYTYGGNRYEVFVDDYEELFIPQEAHR 270
           LYVEYTYGG+RYEV VDDYEEL IPQ +HR
Sbjct: 507 LYVEYTYGGDRYEVIVDDYEELLIPQRSHR 536

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576058|ref|XP_002528924.1| Chaperone protein dnaJ, putative [Ricinus communis] gi|223531626|gb|EEF33453.1| Chaperone protein dnaJ, putative [Ricinus communis]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/271 (77%), Positives = 239/271 (88%)

Query: 1   MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRML 60
           MSAAGELKIGTSSFGASAHYTHRFS KSHGRI GR GSTALE+EVGGGRK+S+FST+R+L
Sbjct: 272 MSAAGELKIGTSSFGASAHYTHRFSSKSHGRIAGRFGSTALEMEVGGGRKLSDFSTVRIL 331

Query: 61  YSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYL 120
           Y+VGIQGIFWKFELHR GQKL++P+LLSR+ +  FATGAF++P S+YF+LKK I KPYYL
Sbjct: 332 YTVGIQGIFWKFELHRGGQKLIIPVLLSRNLNLAFATGAFLVPTSLYFILKKLIFKPYYL 391

Query: 121 KREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARK 180
           +REKQKALEN  KTSAQVQEA+  A+KAQQLLQNVANRKRNKQ+E  GLIITKA+YG+ K
Sbjct: 392 RREKQKALENNVKTSAQVQEARTGAEKAQQLLQNVANRKRNKQVETNGLIITKALYGSLK 451

Query: 181 ALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQ 240
           AL +  E+ E + EL S+V+DVT+PLNFLVNDSGRLKLH+GVKKSGIMGFCD CPGE KQ
Sbjct: 452 ALKRRAESTEVNGELVSEVIDVTIPLNFLVNDSGRLKLHEGVKKSGIMGFCDPCPGETKQ 511

Query: 241 LYVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271
           LYVEYT GG  +EV VDDY EL IPQEAHR+
Sbjct: 512 LYVEYTCGGRAFEVTVDDYAELSIPQEAHRV 542

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138588|ref|XP_002326640.1| predicted protein [Populus trichocarpa] gi|222833962|gb|EEE72439.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 200/271 (73%), Positives = 235/271 (86%)

Query: 1   MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRML 60
           MSA+GELKIGTSSF ASAHYTHRFS KSHGRI GR GST LE+EVGGGRK+S FST+RML
Sbjct: 270 MSASGELKIGTSSFAASAHYTHRFSSKSHGRIAGRFGSTNLEVEVGGGRKLSNFSTVRML 329

Query: 61  YSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYL 120
           Y++GIQGIFWKFELHR GQKL++P+LLSRH +  FATGAF+IP S+YFLLKKF++KPYYL
Sbjct: 330 YTIGIQGIFWKFELHRGGQKLIIPMLLSRHLNPVFATGAFVIPTSLYFLLKKFVVKPYYL 389

Query: 121 KREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARK 180
           +REKQK LEN E+ SAQVQEA+AAA+KAQQLL+ VANRK +K LE   L+ITKAVYG+ K
Sbjct: 390 QREKQKTLENKERNSAQVQEARAAAEKAQQLLKIVANRKISKHLETNELVITKAVYGSSK 449

Query: 181 ALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQ 240
           AL K  E+ E + E AS+V DVT+PLNFL+NDSG+LKLH+GV+KSGIMGFCD CPGEPK 
Sbjct: 450 ALKKADESREVNKESASEVFDVTIPLNFLINDSGQLKLHEGVRKSGIMGFCDPCPGEPKL 509

Query: 241 LYVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271
           L+VE+TYGG R+EV VDDY  L IPQE+HR+
Sbjct: 510 LHVEFTYGGKRFEVEVDDYAALLIPQESHRV 540

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449504996|ref|XP_004162349.1| PREDICTED: chaperone protein dnaJ 13-like [Cucumis sativus]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/265 (76%), Positives = 231/265 (87%)

Query: 2   SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLY 61
           S AGE+K  TSSFGASAHYTHRFS KSHGRI GR+GST LELE+GGGRK+S+FST+RMLY
Sbjct: 272 SVAGEVKFSTSSFGASAHYTHRFSSKSHGRIAGRVGSTMLELELGGGRKLSKFSTVRMLY 331

Query: 62  SVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLK 121
           S+GIQGIFWKFELHR GQKL++PIL+SRH +  FA GAFI P S YFLLKKF++KPYY +
Sbjct: 332 SIGIQGIFWKFELHRGGQKLIIPILISRHLNPIFAAGAFIFPTSAYFLLKKFLVKPYYQR 391

Query: 122 REKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKA 181
           REKQKALENM+KTSAQV EA+A A+KAQQLLQNVANRKRN+Q EI GL+ITKA+YG +K 
Sbjct: 392 REKQKALENMQKTSAQVLEARAGAEKAQQLLQNVANRKRNRQSEISGLVITKAIYGNQKD 451

Query: 182 LTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQL 241
           L K  E  E +DEL+  ++DVTLPLNFLVNDSG+LKLH+GVKKSGIMGFCD CPGEPKQL
Sbjct: 452 LKKKDELKEPNDELSLSIVDVTLPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGEPKQL 511

Query: 242 YVEYTYGGNRYEVFVDDYEELFIPQ 266
           YVEYT+GG  YEV VDDYEEL IP+
Sbjct: 512 YVEYTFGGQTYEVVVDDYEELLIPK 536

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458944|ref|XP_004147206.1| PREDICTED: chaperone protein dnaJ 13-like [Cucumis sativus]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/265 (75%), Positives = 229/265 (86%), Gaps = 2/265 (0%)

Query: 2   SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLY 61
           S AGE    TSSFGASAHYTHRFS KSHGRI GR+GST LELE+GGGRK+S+FST+RMLY
Sbjct: 191 SVAGEFS--TSSFGASAHYTHRFSSKSHGRIAGRVGSTMLELELGGGRKLSKFSTVRMLY 248

Query: 62  SVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLK 121
           S+GIQGIFWKFELHR GQKL++PIL+SRH +  FA GAFI P S YFLLKKF++KPYY +
Sbjct: 249 SIGIQGIFWKFELHRGGQKLIIPILISRHLNPIFAAGAFIFPTSAYFLLKKFLVKPYYQR 308

Query: 122 REKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKA 181
           REKQKALENM+KTSAQV EA+A A+KAQQLLQNVANRKRN+Q EI GL+ITKA+YG +K 
Sbjct: 309 REKQKALENMQKTSAQVLEARAGAEKAQQLLQNVANRKRNRQSEISGLVITKAIYGNQKD 368

Query: 182 LTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQL 241
           L K  E  E +DEL+  ++DVTLPLNFLVNDSG+LKLH+GVKKSGIMGFCD CPGEPKQL
Sbjct: 369 LKKKDELKEPNDELSLSIVDVTLPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGEPKQL 428

Query: 242 YVEYTYGGNRYEVFVDDYEELFIPQ 266
           YVEYT+GG  YEV VDDYEEL IP+
Sbjct: 429 YVEYTFGGQTYEVVVDDYEELLIPK 453

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074151|ref|XP_002304275.1| predicted protein [Populus trichocarpa] gi|222841707|gb|EEE79254.1| predicted protein [Populus trichocarpa]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/265 (71%), Positives = 226/265 (85%)

Query: 2   SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLY 61
           SA+GELKIGTSSF ASAHYT RFS KSHGRI GR GST LE+EVGGGRK+S FST+R LY
Sbjct: 271 SASGELKIGTSSFAASAHYTCRFSSKSHGRIAGRFGSTMLEVEVGGGRKLSNFSTVRTLY 330

Query: 62  SVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLK 121
           ++GIQGIFWKFELHR GQKL++P+LLSRH +  FA GAF+IP S+YFLLKKF++K YYL+
Sbjct: 331 TIGIQGIFWKFELHRGGQKLIIPMLLSRHLNPVFAIGAFVIPTSLYFLLKKFVVKSYYLR 390

Query: 122 REKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKA 181
           REKQK  E  E++SAQV+EA+ AA+KAQQLLQ VANRKR++QLE  GL+ITKAVYG  KA
Sbjct: 391 REKQKTSEIKERSSAQVREARIAAEKAQQLLQTVANRKRSRQLETNGLVITKAVYGNSKA 450

Query: 182 LTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQL 241
           L K  ++ E ++E AS+V+DVT+PLNFL+NDSG+L+LH+GVKKSGIMGFCD CPGEPK L
Sbjct: 451 LKKADKSREVNNESASEVIDVTIPLNFLINDSGQLQLHEGVKKSGIMGFCDPCPGEPKLL 510

Query: 242 YVEYTYGGNRYEVFVDDYEELFIPQ 266
           +VEYTYGG  +EV VDDY  L IP+
Sbjct: 511 HVEYTYGGQIFEVEVDDYAALLIPE 535

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497147|ref|XP_003517424.1| PREDICTED: chaperone protein dnaJ 13-like [Glycine max]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/270 (68%), Positives = 225/270 (83%)

Query: 2   SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLY 61
           SA+GE+K GT SF  S HYTHRFS KS G I GR+GS++LE+EVGGGRK+S+FS++R LY
Sbjct: 271 SASGEVKFGTGSFETSVHYTHRFSPKSLGCIVGRVGSSSLEVEVGGGRKLSKFSSVRWLY 330

Query: 62  SVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLK 121
            +GIQGI WKFEL+R GQKL++PILL+RH +  FATGAF++PAS+YF+LKK  +KPYYL+
Sbjct: 331 IIGIQGISWKFELYRGGQKLIIPILLTRHLNPVFATGAFVVPASLYFVLKKLFIKPYYLR 390

Query: 122 REKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKA 181
           R KQKALE  EKTSAQV+EA+A A+KAQ L QNVANRKRNKQLE GGL+I +A+YG ++ 
Sbjct: 391 RNKQKALEEKEKTSAQVKEARATAEKAQNLQQNVANRKRNKQLETGGLVIMRALYGNQRI 450

Query: 182 LTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQL 241
           L  L  + E+S EL S+V+DVT+PLNFLVNDSG+LKLH+GVKKSGIMGFCD CPG PK L
Sbjct: 451 LNNLKSSSETSFELTSEVIDVTIPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGSPKDL 510

Query: 242 YVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271
           YVEY Y GN+Y V+  DYEEL IPQ +HRI
Sbjct: 511 YVEYVYAGNQYRVWAGDYEELQIPQGSHRI 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242034011|ref|XP_002464400.1| hypothetical protein SORBIDRAFT_01g017590 [Sorghum bicolor] gi|241918254|gb|EER91398.1| hypothetical protein SORBIDRAFT_01g017590 [Sorghum bicolor]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 173/269 (64%), Positives = 222/269 (82%)

Query: 2   SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLY 61
           +A GE+K GT+ FGASAHYTHRFS KSH R+ GR+GSTAL+ E+GGGR+ISEFSTIRM+Y
Sbjct: 271 TATGEVKFGTNFFGASAHYTHRFSSKSHARVAGRVGSTALDFEIGGGRRISEFSTIRMMY 330

Query: 62  SVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLK 121
           ++GIQG+ W+FELHRAGQKL++P+LLS   ++ F T AF IP+++YFLL+ +++KPYYLK
Sbjct: 331 NIGIQGVSWRFELHRAGQKLIIPVLLSADLNALFVTSAFAIPSTLYFLLQTYVVKPYYLK 390

Query: 122 REKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKA 181
           REKQK LE ME  SAQ+ EA+ AA+KAQ+LL+ V+NRK+N+QLE  GL+ITKA+YG+ K 
Sbjct: 391 REKQKTLEKMEGLSAQLTEARKAAEKAQKLLEPVSNRKKNRQLENNGLVITKALYGSCKK 450

Query: 182 LTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQL 241
           + +  E  E   ++ASQV DVT+PLNFLV D+G+LKLHDG+KKSGIMGF D CPGEPK L
Sbjct: 451 IKESSELNEIHSDMASQVFDVTIPLNFLVTDAGQLKLHDGIKKSGIMGFYDPCPGEPKLL 510

Query: 242 YVEYTYGGNRYEVFVDDYEELFIPQEAHR 270
            VEYT+ G +Y+V VDDYE L IPQ+ H+
Sbjct: 511 LVEYTFHGRKYKVMVDDYEALLIPQDIHQ 539

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823375|ref|XP_002879570.1| J-domain protein [Arabidopsis lyrata subsp. lyrata] gi|297325409|gb|EFH55829.1| J-domain protein [Arabidopsis lyrata subsp. lyrata]

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/269 (67%), Positives = 217/269 (80%), Gaps = 3/269 (1%)

Query: 1   MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRML 60
           +SAAG+ KI + + GASA YT + S KSHGRI GR+GS ALE+EVGGGRKISEFST+RM+
Sbjct: 272 VSAAGDFKIESGALGASARYTRKLSSKSHGRIVGRIGSNALEIEVGGGRKISEFSTVRMM 331

Query: 61  YSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYL 120
           Y++GI+GIFWK ELHR  QKL+VPILLS H +  FATGAFI+P S+YFLLKKF++KPY  
Sbjct: 332 YTIGIKGIFWKLELHRGSQKLIVPILLSSHIAPVFATGAFIVPTSLYFLLKKFVVKPYLR 391

Query: 121 KREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARK 180
           KREKQKALEN+EKT  QV EA+A A+KAQQLLQ VA RKRN+Q+E  GLI+TKA+YG  K
Sbjct: 392 KREKQKALENIEKTWGQVGEARARAEKAQQLLQTVATRKRNRQVETDGLIVTKALYGDPK 451

Query: 181 ALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQ 240
           A+ +  E  E  D   S V+DVT+P+NFLV+DSG+LKLH+GVKKSGIMGFCD CPG+PKQ
Sbjct: 452 AIERRDEGVEGVD---SGVIDVTVPMNFLVSDSGQLKLHEGVKKSGIMGFCDPCPGQPKQ 508

Query: 241 LYVEYTYGGNRYEVFVDDYEELFIPQEAH 269
           LY+ YTY    +EV V DYEEL IPQE  
Sbjct: 509 LYIAYTYHSQTFEVTVGDYEELSIPQEGQ 537

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|928936|emb|CAA89204.1| J-domain protein [Arabidopsis thaliana] gi|1585434|prf||2124427A diamide resistance gene

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/269 (66%), Positives = 218/269 (81%), Gaps = 2/269 (0%)

Query: 1   MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRML 60
           +SAAG+ KI +   GASA YT + S KSHGRI GR+GS ALE+E+GGGR+ISEFST+RM+
Sbjct: 273 VSAAGDFKIESGGLGASARYTRKLSSKSHGRIVGRIGSNALEIELGGGRQISEFSTVRMM 332

Query: 61  YSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYL 120
           Y+VG++GIFWK ELHR  QKL+VPILLS H +  FATGAFI+P S+YFLLKKF++KPY L
Sbjct: 333 YTVGLKGIFWKVELHRGSQKLIVPILLSAHLAPVFATGAFIVPTSLYFLLKKFVVKPYLL 392

Query: 121 KREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARK 180
           KREKQKALENMEKT  QV EA+A A+KAQQLLQ VA RK+N+Q+E  GLI+TKA+YG  K
Sbjct: 393 KREKQKALENMEKTWGQVGEARARAEKAQQLLQTVATRKKNRQVETDGLIVTKALYGDPK 452

Query: 181 ALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQ 240
           A+ +  E G   + L S V+DVT+P+NFLV+DSG+LKLH+GVKKSGIMGFCD CPG+PKQ
Sbjct: 453 AIERRNEEG--VEGLDSGVIDVTVPMNFLVSDSGQLKLHEGVKKSGIMGFCDPCPGQPKQ 510

Query: 241 LYVEYTYGGNRYEVFVDDYEELFIPQEAH 269
           LY+ YTY    +EV V DYEEL IPQE  
Sbjct: 511 LYIAYTYHSQPFEVIVGDYEELSIPQEGQ 539

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2058704	538	OWL1 "AT2G35720" [Arabidopsis	0.974	0.490	0.617	6.9e-86
UNIPROTKB|F5H1N1	521	DNAJC11 "DnaJ homolog subfamil	0.929	0.483	0.334	8.8e-26
UNIPROTKB|Q9NVH1	559	DNAJC11 "DnaJ homolog subfamil	0.929	0.450	0.334	1.2e-25
UNIPROTKB|F1PDH1	559	DNAJC11 "Uncharacterized prote	0.929	0.450	0.330	2.5e-25
UNIPROTKB|Q2NL21	559	DNAJC11 "DnaJ homolog subfamil	0.929	0.450	0.319	8.8e-25
UNIPROTKB|F1RIJ5	390	DNAJC11 "Uncharacterized prote	0.929	0.646	0.323	9.7e-25
MGI|MGI:2443386	559	Dnajc11 "DnaJ (Hsp40) homolog,	0.929	0.450	0.319	4e-24
UNIPROTKB|F1NUM7	561	DNAJC11 "Uncharacterized prote	0.929	0.449	0.312	6.7e-24
RGD|1307731	559	Dnajc11 "DnaJ (Hsp40) homolog,	0.929	0.450	0.316	1.4e-23
DICTYBASE|DDB_G0284263	575	DDB_G0284263 "DNAJ heat shock	0.811	0.382	0.317	1.3e-20

TAIR|locus:2058704 OWL1 "AT2G35720" [Arabidopsis thaliana (taxid:3702)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 165/267 (61%), Positives = 200/267 (74%)

Query:     1 MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRML 60
             +SAAG+ KI +   GASA YT + S KSHGRI GR+GS ALE+E+GGGR+ISEFST+RM+
Sbjct:   273 VSAAGDFKIESGGLGASARYTRKLSSKSHGRIVGRIGSNALEIELGGGRQISEFSTVRMM 332

Query:    61 YSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYL 120
             Y+VG++GIFWK ELHR  QKL+VPILLS H +  FATGAFI+P S+YFLLKKF++KPY L
Sbjct:   333 YTVGLKGIFWKVELHRGSQKLIVPILLSAHLAPVFATGAFIVPTSLYFLLKKFVVKPYLL 392

Query:   121 KREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQLEIGGLIITKAVYGARK 180
             KREKQKALENMEKT                       RK+N+Q+E  GLI+TKA+YG  K
Sbjct:   393 KREKQKALENMEKTWGQVGEARARAEKAQQLLQTVATRKKNRQVETDGLIVTKALYGDPK 452

Query:   181 ALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQ 240
             A+ +  E  E  D   S V+DVT+P+NFLV+DSG+LKLH+GVKKSGIMGFCD CPG+PKQ
Sbjct:   453 AIERRNEGVEGLD---SGVIDVTVPMNFLVSDSGQLKLHEGVKKSGIMGFCDPCPGQPKQ 509

Query:   241 LYVEYTYGGNRYEVFVDDYEELFIPQE 267
             LY+ YTY    +EV V DYEEL IPQE
Sbjct:   510 LYIAYTYHSQPFEVIVGDYEELSIPQE 536

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009644 "response to high light intensity" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0055122 "response to very low light intensity stimulus" evidence=IMP

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|F5H1N1 DNAJC11 "DnaJ homolog subfamily C member 11" [Homo sapiens (taxid:9606)]

 Score = 297 (109.6 bits), Expect = 8.8e-26, P = 8.8e-26
 Identities = 91/272 (33%), Positives = 135/272 (49%)

Query:     7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
             L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    SVG
Sbjct:   259 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSVG 318

Query:    65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
             + QG+  K +L+RA Q    PI L+      + F+AT   + P  VYF + + I+KPY L
Sbjct:   319 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAMFYAT---VGPLVVYFAMHRLIIKPY-L 374

Query:   121 KREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQLEIG-GLIITKAVYGAR 179
             + +K+K LE   +++                      R+  +  E   GLII  A YG  
Sbjct:   375 RAQKEKELEKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 434

Query:   180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPK 239
                  + +    S+++  +V+DVT+PL  LV DS +L L +   K+G+ GF D C GE K
Sbjct:   435 -----VNDKSRKSEKV--KVIDVTVPLQCLVKDS-KLILTEA-SKAGLPGFYDPCVGEEK 485

Query:   240 QLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271
              L V Y + G  ++V V D E L IP+++HRI
Sbjct:   486 NLKVLYQFRGVLHQVMVLDSEALRIPKQSHRI 517

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|Q9NVH1 DNAJC11 "DnaJ homolog subfamily C member 11" [Homo sapiens (taxid:9606)]

 Score = 297 (109.6 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 91/272 (33%), Positives = 135/272 (49%)

Query:     7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
             L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    SVG
Sbjct:   297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSVG 356

Query:    65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
             + QG+  K +L+RA Q    PI L+      + F+AT   + P  VYF + + I+KPY L
Sbjct:   357 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAMFYAT---VGPLVVYFAMHRLIIKPY-L 412

Query:   121 KREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQLEIG-GLIITKAVYGAR 179
             + +K+K LE   +++                      R+  +  E   GLII  A YG  
Sbjct:   413 RAQKEKELEKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472

Query:   180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPK 239
                  + +    S+++  +V+DVT+PL  LV DS +L L +   K+G+ GF D C GE K
Sbjct:   473 -----VNDKSRKSEKV--KVIDVTVPLQCLVKDS-KLILTEA-SKAGLPGFYDPCVGEEK 523

Query:   240 QLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271
              L V Y + G  ++V V D E L IP+++HRI
Sbjct:   524 NLKVLYQFRGVLHQVMVLDSEALRIPKQSHRI 555

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|F1PDH1 DNAJC11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 294 (108.6 bits), Expect = 2.5e-25, P = 2.5e-25
 Identities = 90/272 (33%), Positives = 135/272 (49%)

Query:     7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
             L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    SVG
Sbjct:   297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSVG 356

Query:    65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
             + QG+  K +L+RA Q    PI L+      + F+AT   + P  VYF L + ++KPY L
Sbjct:   357 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYAT---VGPLVVYFALHRLVIKPY-L 412

Query:   121 KREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQLEIG-GLIITKAVYGAR 179
             + +K+K LE   +++                      R+  +  E   GLII  A YG  
Sbjct:   413 RAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472

Query:   180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPK 239
                  + +  + S+++  +V+DVT+PL  LV DS +L L +   K+G+ GF D C GE K
Sbjct:   473 -----VNDKSKKSEKV--KVIDVTVPLQCLVKDS-KLILTEA-SKAGLPGFYDPCVGEEK 523

Query:   240 QLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271
              L V Y + G  ++V   D E L IP+++HRI
Sbjct:   524 NLKVLYQFRGVLHQVMALDNEALRIPKQSHRI 555

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|Q2NL21 DNAJC11 "DnaJ homolog subfamily C member 11" [Bos taurus (taxid:9913)]

 Score = 289 (106.8 bits), Expect = 8.8e-25, P = 8.8e-25
 Identities = 87/272 (31%), Positives = 134/272 (49%)

Query:     7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
             L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    S+G
Sbjct:   297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSIG 356

Query:    65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
             + QG+  K +L+RA Q    PI L+      + F+AT     P  +YF L + +++PY L
Sbjct:   357 VPQGVSLKIKLNRASQTYFFPIHLTDQLLPSAVFYATAG---PLVLYFALHRLVIRPY-L 412

Query:   121 KREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQLEIG-GLIITKAVYGAR 179
             + +K+K LE   +++                      R+  +  E   GLII  A YG  
Sbjct:   413 RAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472

Query:   180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPK 239
                  + +  + S+++  +V+DVT+PL  LV DS +L L +   K+G+ GF D C GE K
Sbjct:   473 -----VNDKSKKSEKV--KVIDVTVPLQCLVKDS-KLILTEA-SKAGLPGFYDPCVGEEK 523

Query:   240 QLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271
              L V Y + G  ++V   D E L IP+++HRI
Sbjct:   524 NLKVLYQFRGVLHQVMALDSEALRIPKQSHRI 555

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|F1RIJ5 DNAJC11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 88/272 (32%), Positives = 133/272 (48%)

Query:     7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
             L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +  + SVG
Sbjct:   128 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAVVSVG 187

Query:    65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
             + QG+  K +L+RA Q    PI L+      + F+AT   + P  +YF + + ++KPY L
Sbjct:   188 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYAT---VGPLVLYFAMHRLVIKPY-L 243

Query:   121 KREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQLEIG-GLIITKAVYGAR 179
             + +K+K LE   +++                      R+  +  E   GLII  A YG  
Sbjct:   244 RAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYG-- 301

Query:   180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPK 239
             K ++   +  E       + +DVT+PL  LV DS +L L +   K+G+ GF D C GE K
Sbjct:   302 KFVSDRSKRHERV-----KAIDVTVPLQCLVRDS-KLILTEA-SKAGLPGFYDPCVGEEK 354

Query:   240 QLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271
              L V Y + G  ++V   D E L IP+++HRI
Sbjct:   355 NLKVLYQFRGVLHQVMALDSEALRIPKQSHRI 386

GO:0005743 "mitochondrial inner membrane" evidence=IEA

MGI|MGI:2443386 Dnajc11 "DnaJ (Hsp40) homolog, subfamily C, member 11" [Mus musculus (taxid:10090)]

 Score = 283 (104.7 bits), Expect = 4.0e-24, P = 4.0e-24
 Identities = 87/272 (31%), Positives = 133/272 (48%)

Query:     7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
             L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    S+G
Sbjct:   297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTIVEYGAERKISRHSVLGAAVSIG 356

Query:    65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
             + QG+  K +L+RA Q    PI L+      + F+AT   + P  VY  + + I++PY L
Sbjct:   357 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYAT---VGPLVVYLAVHRLIIRPY-L 412

Query:   121 KREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQLEIG-GLIITKAVYGAR 179
             + +K+K LE   + +                      R+  +  E   GLII  A YG  
Sbjct:   413 RAQKEKELEKQRENTASDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472

Query:   180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPK 239
                  + +    ++++  +V+DVT+PL  LV DS +L L +   K+G+ GF D C GE K
Sbjct:   473 -----VNDKSRKNEKV--KVIDVTVPLQCLVKDS-KLILTEA-SKAGLPGFYDPCVGEEK 523

Query:   240 QLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271
              L V Y + G  ++V V D E L IP+++HRI
Sbjct:   524 SLRVLYQFRGVLHQVMVPDSEALRIPKQSHRI 555

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NUM7 DNAJC11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 281 (104.0 bits), Expect = 6.7e-24, P = 6.7e-24
 Identities = 85/272 (31%), Positives = 133/272 (48%)

Query:     7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
             L++G         Y H+F  +   RI+G L  G     +E G  RKIS  S +    SVG
Sbjct:   299 LQLGIPHSFMMVSYQHKFQDEDQTRIKGSLKAGFFGTIVEYGAERKISRHSILGATVSVG 358

Query:    65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
             + QG+  K +L+RA Q    P+ L+      + F+AT   + P  +YF + + I+KPY L
Sbjct:   359 VPQGVSLKIKLNRASQTYFFPVHLTDQLLPSAVFYAT---VGPLVIYFAMHRLIIKPY-L 414

Query:   121 KREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQLEIG-GLIITKAVYGAR 179
             + +K++ LE   +++                      R+  +  E   GLI+  A YG  
Sbjct:   415 RAQKERELEKQRESTASDILQKKQEAEAAVRLMQESVRRIIEAEEARMGLIVVNAWYGKF 474

Query:   180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPK 239
                  + +    ++++  +V+DVT+PL  LV DS +L L +   K G+ GF D C GE K
Sbjct:   475 -----VNDNSRKNEKV--KVIDVTVPLQCLVKDS-KLILTEA-SKVGLPGFYDPCVGEEK 525

Query:   240 QLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271
              L V Y + G  ++V   D E L IP+++HRI
Sbjct:   526 SLKVLYQFRGVLHQVMSADNEALRIPKQSHRI 557

GO:0005743 "mitochondrial inner membrane" evidence=IEA

RGD|1307731 Dnajc11 "DnaJ (Hsp40) homolog, subfamily C, member 11" [Rattus norvegicus (taxid:10116)]

 Score = 278 (102.9 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 86/272 (31%), Positives = 133/272 (48%)

Query:     7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
             L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    S+G
Sbjct:   297 LQLGIPHSFALISYQHKFQDDDQTRLKGSLKAGFFGTIVEYGAERKISRHSVLGAAVSIG 356

Query:    65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
             + QG+  K +L+RA Q    PI L+      + F+AT   + P  VY  + + I++PY L
Sbjct:   357 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYAT---VGPLVVYLAVHRLIIRPY-L 412

Query:   121 KREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQLEIG-GLIITKAVYGAR 179
             + +K+K LE   + +                      R+  +  E   GLII  A YG  
Sbjct:   413 RAQKEKDLEKQRENTASDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472

Query:   180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPK 239
                  + +    ++++  +V+DVT+PL  LV DS +L L +   K+G+ GF D C GE K
Sbjct:   473 -----VNDKSRKNEKV--KVIDVTVPLQCLVKDS-KLILTEA-SKAGLPGFYDPCVGEEK 523

Query:   240 QLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271
              L V Y + G  ++V + D E L IP+++HRI
Sbjct:   524 SLRVLYQFRGVLHQVMMPDSEALRIPKQSHRI 555

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

DICTYBASE|DDB_G0284263 DDB_G0284263 "DNAJ heat shock N-terminal domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 251 (93.4 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 73/230 (31%), Positives = 108/230 (46%)

Query:    45 VGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPA 104
             +G  RKI++   I +   V      +   LH   Q L +PI +    S   +   F +PA
Sbjct:   352 IGFKRKITKVFDIDLSMHVNPSRYLYVIGLHHRYQSLEIPIPIYSDLSLSTSLLFFTLPA 411

Query:   105 SVYFLLKKFILKPYYLKREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQL 164
                 LLK  ++KP   K+E++K +E  EK +                       K  K+ 
Sbjct:   412 VTLSLLKYLVVKPLMKKKEQKKIMEKKEKYADQARKAKRKAEMDITLVKQLVENKVLKEK 471

Query:   165 EIGGLIITKAVYGARKALTKLGETGESSDELASQ---VLDVTLPLNFLVNDSGRLKLHDG 221
                GLII +AVYG      KL E  + SD  + +    +DVT+PL +LV DS +L LH  
Sbjct:   472 TKNGLIIQEAVYG------KLDEKVDHSDPFSVEFPPTIDVTIPLQYLVEDS-KLVLHGN 524

Query:   222 VKKSGIMGFCDSCPGEPKQLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271
              KKS ++GF D    E KQL V Y +    + + V+D ++L IP ++H I
Sbjct:   525 NKKSDLLGFWDPRISEEKQLKVTYFFQNRLHRITVNDIDQLLIPLKSHLI 574

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00009601001 SubName- Full=Chromosome chr2 scaffold_241, whole genome shotgun sequence; (537 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
pfam11875	144	pfam11875, DUF3395, Domain of unknown function (DU	4e-42

>gnl|CDD|221283 pfam11875, DUF3395, Domain of unknown function (DUF3395)

 Score =  140 bits (356), Expect = 4e-42
 Identities = 57/151 (37%), Positives = 88/151 (58%), Gaps = 9/151 (5%)

Query: 117 PYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVY 176
           P+   ++K++     EK   ++ + K  A+ A  L+ +V  RK  ++ E GGL+I KA Y
Sbjct: 1   PFNKAQKKKEQERQREKNKTEIAKKKQEAESAVSLMGDVVERKLTREEEKGGLVILKAYY 60

Query: 177 GARKALTKLGETGESSDELASQ-VLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSC- 234
           G       L   G++ + + ++ V+DVT+PL  LV DS +L L +G  KS ++GF D C 
Sbjct: 61  G------HLDSKGKAQNNVENEEVIDVTIPLQALVRDS-QLVLPEGSSKSNLLGFYDPCI 113

Query: 235 PGEPKQLYVEYTYGGNRYEVFVDDYEELFIP 265
            GE K LY+ Y+Y G  +EV V+D EEL +P
Sbjct: 114 LGEEKVLYIRYSYRGRLHEVIVNDAEELRLP 144

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 147 to 176 amino acids in length. This domain is found associated with pfam00226. Length = 144

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	100.0
PF11875	151	DUF3395: Domain of unknown function (DUF3395); Int	100.0
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	95.46
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	94.99
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	94.97
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	94.45
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	94.32
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	94.23
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	94.19
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	94.14
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	93.77
PRK06568	154	F0F1 ATP synthase subunit B; Validated	93.16
PRK06569	155	F0F1 ATP synthase subunit B'; Validated	93.03
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	92.69
PF02140	80	Gal_Lectin: Galactose binding lectin domain; Inter	92.47
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	92.34
PRK05759	156	F0F1 ATP synthase subunit B; Validated	92.19
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	91.95
PRK06231	205	F0F1 ATP synthase subunit B; Validated	91.27
PRK07352	174	F0F1 ATP synthase subunit B; Validated	91.02
PRK09173	159	F0F1 ATP synthase subunit B; Validated	89.84
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	89.73
PRK08475	167	F0F1 ATP synthase subunit B; Validated	88.57
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	87.83
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	87.81
CHL00019	184	atpF ATP synthase CF0 B subunit	87.55
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	85.89
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	85.06
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	83.42
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	82.71

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-75  Score=558.50  Aligned_cols=261  Identities=41%  Similarity=0.629  Sum_probs=248.7

Q ss_pred             ceeeEEEEccccceEEEEEEEecCCC--cceeEeEEEeeeeeEEEeeceeeeccceeEEEEEEEeee-eeEEEEEEEEcC
Q 024177            2 SAAGELKIGTSSFGASAHYTHRFSKK--SHGRIQGRLGSTALELEVGGGRKISEFSTIRMLYSVGIQ-GIFWKFELHRAG   78 (271)
Q Consensus         2 sw~~~~~~g~~~~~~s~~y~r~~~~~--~~~r~~~~~gt~g~~~e~g~~rkvs~~s~~g~~v~ig~~-Gv~lkl~~~R~g   78 (271)
                      +.++++.+|.++.+.+..|+|++.++  ++.++++++||+|+.+|+|++||||+||++|+.+++|++ ||+||++|+|+|
T Consensus       280 s~a~~~~i~sp~~~~~~~y~~k~k~~~es~~kl~~k~gt~G~~ve~g~~RkvSryStv~~~~svgvpsgi~~k~~~~R~~  359 (546)
T KOG0718|consen  280 SLAVNLEIGSPHMYAGIAYTYKLKNATESQIKLSTKMGTFGLQVEYGTERKVSRYSTVGANVSVGVPSGITLKVKLLRAG  359 (546)
T ss_pred             cceeeeEecCCcceeeeeeeeecCccccceeEEEEEeeeeeEEeeccccceeeeceeEEEEEEEcCCcceEEEEeeeccC
Confidence            45778899999999999999999886  899999999999999999999999999999999999995 999999999999


Q ss_pred             eEEEEEEEeecCCChhhhhhHhhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177           79 QKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANR  158 (271)
Q Consensus        79 Q~~~~PI~Ls~~~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~r~~~~~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r  158 (271)
                      |+|.|||+||+++.|+++|||+++|+++|++++++|++||..++++++.+++++++++.+.+||+||+.|+.||+++|+|
T Consensus       360 Q~~~~pI~l~d~~~p~avfya~v~P~~s~F~l~k~v~rP~~~~~k~~~~~~~~ek~~~~~~~Kk~eA~~av~LMq~t~~R  439 (546)
T KOG0718|consen  360 QKYSFPIHLCDELLPSAVFYALVFPITSYFGLKKFVLRPYLLKRKKRERLLRREKLKDSVEAKKVEAERAVKLMQETAER  439 (546)
T ss_pred             cEEEEEEEeechhhhhhhhhhhhHHHHHHHHHHHHeecHHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCceEEEEEEecCCCCCCccCCCCCCCccccCeeEEeeeeeeeEEecCCcEEEcCCccccCCCCccCCCCCCC
Q 024177          159 KRNKQLEIGGLIITKAVYGARKALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEP  238 (271)
Q Consensus       159 ~~~~E~~~~GLVI~~A~YG~~~~~~~~~~~~~~~~~~~~~~iDVTipLq~lV~dsg~L~l~~g~sKs~L~GF~DP~~g~~  238 (271)
                      +++.|++|+||||++|+||+....+..       ...++.+||||||+||||+|| ||.||+ ++||+||||||||||++
T Consensus       440 i~~~E~~k~GLII~~A~Yg~~~~~~~~-------~~~~~~~iDVTVpiq~lV~~s-qL~l~e-~sKS~lpGFydpc~ge~  510 (546)
T KOG0718|consen  440 IKKLEEEKGGLIIEYAEYGVVNAGGTR-------ANEPELVIDVTVPIQALVKNS-QLALHE-VSKSGLPGFYDPCPGEP  510 (546)
T ss_pred             HHHHHHhcCceEEEEeeeccccccccc-------cCCCcceEEEEEEhhheeccC-eEEeee-cccccCCcccCCCCCCc
Confidence            999999999999999999998764321       224568999999999999998 999999 79999999999999999


Q ss_pred             ceEEEEEEECCeeEEEEEcCCccccccccccCC
Q 024177          239 KQLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI  271 (271)
Q Consensus       239 K~L~V~Y~f~~~~h~v~v~D~e~l~lP~~~H~~  271 (271)
                      |.|+|.|+||++.|+|+|.|.|+|.||+|.|+.
T Consensus       511 K~L~I~Ytf~~q~h~v~v~D~e~L~lP~r~~~~  543 (546)
T KOG0718|consen  511 KELEIVYTFHGQRHRVVVRDKEGLFLPSRGHRS  543 (546)
T ss_pred             cEEEEEEEEcCceEEEEEecccccccccccccc
Confidence            999999999999999999999999999999984

>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein

Probab=100.00  E-value=5.4e-51  Score=345.69  Aligned_cols=148  Identities=46%  Similarity=0.711  Sum_probs=134.4

Q ss_pred             hhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEEEEEecCCCCCCccCCCCC-CCccc
Q 024177          117 PYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKALTKLGETGE-SSDEL  195 (271)
Q Consensus       117 P~~~r~~~~~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r~~~~E~~~~GLVI~~A~YG~~~~~~~~~~~~~-~~~~~  195 (271)
                      |+.++++++++++++++++++++++|+||+++++||+++|+|++++|++++||||++|+||+.++..+.....+ .....
T Consensus         1 P~~~~~~~~~~~~~r~~~~~~~~~~r~eA~~~~~lm~~~a~r~~~~E~~~~GLVI~~A~YG~~~~~~~~~~~~~~~~~~~   80 (151)
T PF11875_consen    1 PYRRRRKKREIEEQREKNKEEIAEKRAEAESAIELMKETAERKQRKEEEKGGLVILKAWYGNLPAKSDESNNDEPEDPDL   80 (151)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEcCCcccccccccccccccccc
Confidence            88999999999999999999999999999999999999999999999999999999999999987433221111 11234


Q ss_pred             cCeeEEeeeeeeeEEecCCcEEEcCCccccCCCCccCCCC--CCCceEEEEEEECCeeEEEEEcCCcccccc
Q 024177          196 ASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCP--GEPKQLYVEYTYGGNRYEVFVDDYEELFIP  265 (271)
Q Consensus       196 ~~~~iDVTipLq~lV~dsg~L~l~~g~sKs~L~GF~DP~~--g~~K~L~V~Y~f~~~~h~v~v~D~e~l~lP  265 (271)
                      .+++|||||||||||+|| +|.||+|++||+|+|||||||  |++|.|+|+|+|+|+.|+|+|+|.++|+||
T Consensus        81 ~~~~iDVTipLq~lV~dS-~L~l~~~~sKs~L~GF~DP~p~~ge~K~L~V~Y~f~g~~h~v~v~D~e~l~iP  151 (151)
T PF11875_consen   81 DPPVIDVTIPLQALVKDS-QLILPEGVSKSGLPGFYDPCPFLGEPKQLRVRYRFRGKLHEVTVDDREPLRIP  151 (151)
T ss_pred             cCcEEEEhhhhhhEeecC-EEEEcCCCchhhCCCCCCCccccCCccEEEEEEEECCEEEEEEECCCCcccCC
Confidence            568999999999999999 999999999999999999999  999999999999999999999999999999

DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=95.46  E-value=0.19  Score=42.07  Aligned_cols=70  Identities=14%  Similarity=0.244  Sum_probs=44.5

Q ss_pred             CChhhhhhHhhHHHHHHHHHHhhhcchhhhHHHHH----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024177           91 FSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQ----------------KALENMEKTSAQVQEAKAAAQKAQQLLQN  154 (271)
Q Consensus        91 ~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~r~~~~----------------~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~  154 (271)
                      ++|...+|-++.=+++|+++++|+++|...--++|                +..+.+++.++.+..+|+||....+-..+
T Consensus         5 l~~~~~~~qli~Flil~~~l~kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~   84 (141)
T PRK08476          5 VNPYLMLATFVVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIA   84 (141)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666777777777889999999999986521111                12223445556666677777666665555


Q ss_pred             HHHHHH
Q 024177          155 VANRKR  160 (271)
Q Consensus       155 ~a~r~~  160 (271)
                      .|+...
T Consensus        85 ~A~~ea   90 (141)
T PRK08476         85 KAKEEA   90 (141)
T ss_pred             HHHHHH
Confidence            555443

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=94.99  E-value=0.27  Score=42.37  Aligned_cols=70  Identities=20%  Similarity=0.132  Sum_probs=42.9

Q ss_pred             CChhhhhhHhhHHHHHHHHHHhhhcchhhhHHHHH----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024177           91 FSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQ----------------KALENMEKTSAQVQEAKAAAQKAQQLLQN  154 (271)
Q Consensus        91 ~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~r~~~~----------------~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~  154 (271)
                      ++|...||..+.=+++++++.+|+++|...--++|                +..+..++.++++.++|++|.+.++-.+.
T Consensus        16 ~~~~~~~~~~i~Flil~~lL~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~   95 (175)
T PRK14472         16 PNPGLIFWTAVTFVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKE   95 (175)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667778777777888889999999976531111                11122334555666666666666665555


Q ss_pred             HHHHHH
Q 024177          155 VANRKR  160 (271)
Q Consensus       155 ~a~r~~  160 (271)
                      .+++..
T Consensus        96 ~a~~~~  101 (175)
T PRK14472         96 YAEKLR  101 (175)
T ss_pred             HHHHHH
Confidence            555443

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=94.97  E-value=0.3  Score=42.55  Aligned_cols=65  Identities=17%  Similarity=0.157  Sum_probs=38.8

Q ss_pred             hhhhhHhhHHHHHHHHHHhhhcchhhhHHHHH----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024177           94 FFATGAFIIPASVYFLLKKFILKPYYLKREKQ----------------KALENMEKTSAQVQEAKAAAQKAQQLLQNVAN  157 (271)
Q Consensus        94 ~~~~~a~v~P~~~~~~~~~~v~~P~~~r~~~~----------------~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~  157 (271)
                      ..+||.++.=+++|+++++|+++|..+--++|                +..+.+++.++.+.++|.||.+.++-.+..++
T Consensus        32 ~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~  111 (181)
T PRK13454         32 NQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQ  111 (181)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36778888877888899999999976521111                11222344555555666666555555544444


Q ss_pred             H
Q 024177          158 R  158 (271)
Q Consensus       158 r  158 (271)
                      +
T Consensus       112 ~  112 (181)
T PRK13454        112 A  112 (181)
T ss_pred             H
Confidence            3

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=94.45  E-value=0.39  Score=42.87  Aligned_cols=28  Identities=14%  Similarity=-0.013  Sum_probs=21.9

Q ss_pred             hhhhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177           93 SFFATGAFIIPASVYFLLKKFILKPYYL  120 (271)
Q Consensus        93 ~~~~~~a~v~P~~~~~~~~~~v~~P~~~  120 (271)
                      ++-+||..+.=+++|+++.+++++|...
T Consensus        53 ~~~l~w~~I~FliL~~lL~k~~~~pI~~   80 (204)
T PRK09174         53 ASQLLWLAITFGLFYLFMSRVILPRIGG   80 (204)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777778888998998888765

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=94.32  E-value=0.56  Score=39.66  Aligned_cols=30  Identities=13%  Similarity=0.112  Sum_probs=24.3

Q ss_pred             CChhhhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177           91 FSSFFATGAFIIPASVYFLLKKFILKPYYL  120 (271)
Q Consensus        91 ~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~  120 (271)
                      ++|..++|-++.=+++++++.+|+++|...
T Consensus         3 ~~~~~~~~~~inF~il~~iL~~f~~kpi~~   32 (159)
T PRK13461          3 INIPTIIATIINFIILLLILKHFFFDKIKA   32 (159)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            577777887777778888899999999765

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=94.23  E-value=0.59  Score=39.74  Aligned_cols=68  Identities=18%  Similarity=0.191  Sum_probs=40.6

Q ss_pred             CChhhhhhHhhHHHHHHHHHHhhhcchhhhHHHHH----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024177           91 FSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQ----------------KALENMEKTSAQVQEAKAAAQKAQQLLQN  154 (271)
Q Consensus        91 ~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~r~~~~----------------~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~  154 (271)
                      ++|..++|-++.=+++++++.+|+++|...--.+|                +..+...+.++.+.++|.||.+.++--+.
T Consensus         6 ~~~~~~~~~~inflil~~lL~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~   85 (164)
T PRK14473          6 INLGLLIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQE   85 (164)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666777777777788899999999976531111                11222345555556666666555554444


Q ss_pred             HHHH
Q 024177          155 VANR  158 (271)
Q Consensus       155 ~a~r  158 (271)
                      .+++
T Consensus        86 ~a~~   89 (164)
T PRK14473         86 RARA   89 (164)
T ss_pred             HHHH
Confidence            4443

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=94.19  E-value=0.59  Score=39.73  Aligned_cols=28  Identities=25%  Similarity=0.108  Sum_probs=22.6

Q ss_pred             hhhhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177           93 SFFATGAFIIPASVYFLLKKFILKPYYL  120 (271)
Q Consensus        93 ~~~~~~a~v~P~~~~~~~~~~v~~P~~~  120 (271)
                      |...||-++.=+++++++++|+++|...
T Consensus         8 ~~~~~~~~i~Flil~~ll~~~l~~pi~~   35 (164)
T PRK14471          8 FGLFFWQTILFLILLLLLAKFAWKPILG   35 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            4667777777778889999999999765

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=94.14  E-value=0.59  Score=40.34  Aligned_cols=68  Identities=19%  Similarity=0.112  Sum_probs=40.8

Q ss_pred             CChhhhhhHhhHHHHHHHHHHhhhcchhhhHHHHH----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024177           91 FSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQ----------------KALENMEKTSAQVQEAKAAAQKAQQLLQN  154 (271)
Q Consensus        91 ~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~r~~~~----------------~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~  154 (271)
                      ++|..+||-.+.=+++++++.+|+++|...--.+|                +..+..++.++++..+|.||.+.++-.+.
T Consensus        16 ~~~~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~   95 (173)
T PRK13453         16 VEWGTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKV   95 (173)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55777777777777888999999999976421111                11122334555556666666555555555


Q ss_pred             HHHH
Q 024177          155 VANR  158 (271)
Q Consensus       155 ~a~r  158 (271)
                      .+++
T Consensus        96 ~a~~   99 (173)
T PRK13453         96 QARQ   99 (173)
T ss_pred             HHHH
Confidence            5544

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=93.77  E-value=0.78  Score=39.46  Aligned_cols=30  Identities=17%  Similarity=0.127  Sum_probs=22.9

Q ss_pred             CChhhhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177           91 FSSFFATGAFIIPASVYFLLKKFILKPYYL  120 (271)
Q Consensus        91 ~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~  120 (271)
                      ++|...||.++.=+++++++.+|+++|..+
T Consensus        14 ~~~~~~~~~~i~Flil~~iL~~~~~kpi~~   43 (173)
T PRK13460         14 VNPGLVVWTLVTFLVVVLVLKKFAWDVILK   43 (173)
T ss_pred             CcHhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            355567777777777888888899999765

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=93.16  E-value=1.1  Score=38.49  Aligned_cols=27  Identities=7%  Similarity=-0.202  Sum_probs=21.2

Q ss_pred             hhhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177           94 FFATGAFIIPASVYFLLKKFILKPYYL  120 (271)
Q Consensus        94 ~~~~~a~v~P~~~~~~~~~~v~~P~~~  120 (271)
                      +..||-++.=+++++++++|.++|...
T Consensus         5 ~~~fwq~I~FlIll~ll~kfawkPI~~   31 (154)
T PRK06568          5 DESFWLAVSFVIFVYLIYRPAKKAILN   31 (154)
T ss_pred             HhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            346777777777888899999999765

>PRK06569 F0F1 ATP synthase subunit B'; Validated

Probab=93.03  E-value=1.1  Score=38.50  Aligned_cols=29  Identities=14%  Similarity=-0.032  Sum_probs=22.8

Q ss_pred             ChhhhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177           92 SSFFATGAFIIPASVYFLLKKFILKPYYL  120 (271)
Q Consensus        92 ~~~~~~~a~v~P~~~~~~~~~~v~~P~~~  120 (271)
                      .+..+||..+.=++.|++++++++.|..+
T Consensus         9 ~~sqifw~iI~FlILy~ll~kf~~ppI~~   37 (155)
T PRK06569          9 YYSQIFWLIVTFGLLYIFVYKFITPKAEE   37 (155)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            34567777777778899999999988765

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=92.69  E-value=1.2  Score=40.90  Aligned_cols=30  Identities=23%  Similarity=0.396  Sum_probs=23.2

Q ss_pred             CChhhhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177           91 FSSFFATGAFIIPASVYFLLKKFILKPYYL  120 (271)
Q Consensus        91 ~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~  120 (271)
                      ++|..+++-++-=+++++++++|+++|...
T Consensus         3 id~~t~~~qiInFlILv~lL~~fl~kPi~~   32 (250)
T PRK14474          3 IDWFTVVAQIINFLILVYLLRRFLYKPIIQ   32 (250)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667776777777888899999999765

>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []

Probab=92.47  E-value=0.079  Score=39.72  Aligned_cols=71  Identities=25%  Similarity=0.312  Sum_probs=31.8

Q ss_pred             eEEEEEEecCCCCCCccCCCCCCCccccCeeEEeeeeeeeEEecCCcEEEcCCccccCCCCccCCCCCCCceEEEEEE
Q 024177          169 LIITKAVYGARKALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQLYVEYT  246 (271)
Q Consensus       169 LVI~~A~YG~~~~~~~~~~~~~~~~~~~~~~iDVTipLq~lV~dsg~L~l~~g~sKs~L~GF~DP~~g~~K~L~V~Y~  246 (271)
                      +-|..|.||..+...-.........+-  ..-|+.--++..-++.-+=.|+..  .+   =|-|||||..|.|.|.|+
T Consensus         9 I~I~~A~YGR~~~~~C~~~~~~~~~~C--~~~~~~~~v~~~C~g~~~C~v~~~--~~---~f~dpC~~~~KyL~V~Y~   79 (80)
T PF02140_consen    9 ISIDSAFYGRTSSSICPSSSSGSNTNC--SAPDALSIVKERCNGKQSCSVPAD--NS---VFGDPCPGTSKYLEVTYT   79 (80)
T ss_dssp             EEEEEEEEEBSSSSTT--GGGCS-TTB----TTHHHHHHHHHTTBSEEEEESS--HH---HH--SSTTS--EEEEEEE
T ss_pred             EEEEEeecCCCCCCCCcCCCcCCCCcc--ccccccchhHHhCCCCCccEEEec--cC---ccCCCCCCCCeEEEEEEE
Confidence            789999999986421110000000000  011233333333332223444442  11   146999999999999996

The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=92.34  E-value=1.4  Score=40.05  Aligned_cols=30  Identities=23%  Similarity=0.365  Sum_probs=23.3

Q ss_pred             CChhhhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177           91 FSSFFATGAFIIPASVYFLLKKFILKPYYL  120 (271)
Q Consensus        91 ~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~  120 (271)
                      ++|..+++-++.=+++++++.+|+++|...
T Consensus         3 id~~t~~~qiInFlil~~lL~kfl~kPi~~   32 (246)
T TIGR03321         3 IDWFTVIAQLINFLILVWLLKRFLYRPILD   32 (246)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            566667777777777888888999999765

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=92.19  E-value=1.9  Score=35.99  Aligned_cols=26  Identities=19%  Similarity=0.323  Sum_probs=18.7

Q ss_pred             hhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177           95 FATGAFIIPASVYFLLKKFILKPYYL  120 (271)
Q Consensus        95 ~~~~a~v~P~~~~~~~~~~v~~P~~~  120 (271)
                      .+||.++.=+++++++++++++|..+
T Consensus         6 ~~~~~~i~Flil~~il~~~~~~pi~~   31 (156)
T PRK05759          6 TLIGQLIAFLILVWFIMKFVWPPIMK   31 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            45555555566777888899999765

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=91.95  E-value=1.8  Score=36.63  Aligned_cols=26  Identities=15%  Similarity=0.053  Sum_probs=19.5

Q ss_pred             hhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177           95 FATGAFIIPASVYFLLKKFILKPYYL  120 (271)
Q Consensus        95 ~~~~a~v~P~~~~~~~~~~v~~P~~~  120 (271)
                      .++|-.+.-+++++++++|+++|...
T Consensus        24 t~~~~~inFliL~~lL~k~l~~Pi~~   49 (156)
T CHL00118         24 TLPLMALQFLLLMVLLNIILYKPLLK   49 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666677888889999999754

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=91.27  E-value=2.2  Score=37.95  Aligned_cols=65  Identities=17%  Similarity=0.069  Sum_probs=35.7

Q ss_pred             hhhhHhhHHHHHHHHHHhhhcchhhhHHHHH----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177           95 FATGAFIIPASVYFLLKKFILKPYYLKREKQ----------------KALENMEKTSAQVQEAKAAAQKAQQLLQNVANR  158 (271)
Q Consensus        95 ~~~~a~v~P~~~~~~~~~~v~~P~~~r~~~~----------------~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r  158 (271)
                      .+++-++.=+++++++.+|+++|..+--.+|                +..+..++.++.+.++|+||.+.++-.+..+++
T Consensus        50 ~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~  129 (205)
T PRK06231         50 VFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQ  129 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445577778888899976521111                112223345555666666666666666666554


Q ss_pred             H
Q 024177          159 K  159 (271)
Q Consensus       159 ~  159 (271)
                      .
T Consensus       130 ~  130 (205)
T PRK06231        130 L  130 (205)
T ss_pred             H
Confidence            3

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=91.02  E-value=2.9  Score=35.92  Aligned_cols=68  Identities=16%  Similarity=0.044  Sum_probs=33.0

Q ss_pred             ChhhhhhHhhHHHHHHHHHHhhhcchhhhHHHH--H--------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024177           92 SSFFATGAFIIPASVYFLLKKFILKPYYLKREK--Q--------------KALENMEKTSAQVQEAKAAAQKAQQLLQNV  155 (271)
Q Consensus        92 ~~~~~~~a~v~P~~~~~~~~~~v~~P~~~r~~~--~--------------~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~  155 (271)
                      ++...+|-++-=+++++++.+|+.+|..+--.+  .              +..+..++.++++.++|+||.+.++-.+..
T Consensus        18 ~~~~~~~~iinflIl~~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~   97 (174)
T PRK07352         18 NLNLLETNLINLAIVIGLLYYFGRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKAR   97 (174)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            343333433333445666677777886542111  1              112223344555566666666555555555


Q ss_pred             HHHH
Q 024177          156 ANRK  159 (271)
Q Consensus       156 a~r~  159 (271)
                      +++.
T Consensus        98 a~~~  101 (174)
T PRK07352         98 AEAI  101 (174)
T ss_pred             HHHH
Confidence            5443

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=89.84  E-value=3.7  Score=34.66  Aligned_cols=27  Identities=15%  Similarity=0.134  Sum_probs=14.0

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024177          131 MEKTSAQVQEAKAAAQKAQQLLQNVAN  157 (271)
Q Consensus       131 r~~~~~~i~~~R~eA~~a~~Lm~~~a~  157 (271)
                      .++.++++..+|.||.+.++-.+..++
T Consensus        56 ~~~~e~~L~~A~~ea~~ii~~A~~~a~   82 (159)
T PRK09173         56 LAEYQRKRKEAEKEAADIVAAAEREAE   82 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555566655555554444444

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=89.73  E-value=4.7  Score=33.07  Aligned_cols=25  Identities=16%  Similarity=0.103  Sum_probs=17.7

Q ss_pred             hhhHhhHHHHHHHHHHhhhcchhhh
Q 024177           96 ATGAFIIPASVYFLLKKFILKPYYL  120 (271)
Q Consensus        96 ~~~a~v~P~~~~~~~~~~v~~P~~~  120 (271)
                      +++-.+.-+++++++.+|+++|...
T Consensus         8 ~~~~~i~flil~~ll~~~l~~pi~~   32 (140)
T PRK07353          8 LPLMAVQFVLLTFILNALFYKPVGK   32 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455567788888899999765

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=88.57  E-value=5.2  Score=34.36  Aligned_cols=66  Identities=18%  Similarity=0.045  Sum_probs=37.4

Q ss_pred             hhhhhHhhHHHHHHHHHHhhhcchhhhHHHHH----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024177           94 FFATGAFIIPASVYFLLKKFILKPYYLKREKQ----------------KALENMEKTSAQVQEAKAAAQKAQQLLQNVAN  157 (271)
Q Consensus        94 ~~~~~a~v~P~~~~~~~~~~v~~P~~~r~~~~----------------~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~  157 (271)
                      ..+||.++-=++.++++.+|+++|...--++|                +..+..++.++.+.++|++|.+.++-.+..++
T Consensus        23 ~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe  102 (167)
T PRK08475         23 YDIIERTINFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAY  102 (167)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666778888889999976531111                11222334555556666666665555555555


Q ss_pred             HH
Q 024177          158 RK  159 (271)
Q Consensus       158 r~  159 (271)
                      ..
T Consensus       103 ~~  104 (167)
T PRK08475        103 IL  104 (167)
T ss_pred             HH
Confidence            44

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=87.83  E-value=6.4  Score=34.10  Aligned_cols=22  Identities=9%  Similarity=-0.167  Sum_probs=12.5

Q ss_pred             hhHhhHHHHHHHHHHhhhcchh
Q 024177           97 TGAFIIPASVYFLLKKFILKPY  118 (271)
Q Consensus        97 ~~a~v~P~~~~~~~~~~v~~P~  118 (271)
                      ||.++.-+++++++.+|.+.|.
T Consensus        30 ~~~~inflil~~iL~~f~~~~~   51 (184)
T PRK13455         30 FVVTLAFLLFIGILVYFKVPGM   51 (184)
T ss_pred             HHHHHHHHHHHHHHHHHhccHH
Confidence            3445555566666666655553

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=87.81  E-value=4.5  Score=32.38  Aligned_cols=25  Identities=32%  Similarity=0.406  Sum_probs=17.5

Q ss_pred             hhhHhhHHHHHHHHHHhhhcchhhh
Q 024177           96 ATGAFIIPASVYFLLKKFILKPYYL  120 (271)
Q Consensus        96 ~~~a~v~P~~~~~~~~~~v~~P~~~  120 (271)
                      .||-++.=+++++++.+|+++|..+
T Consensus         2 l~~~~i~Flil~~~l~~~~~~pi~~   26 (132)
T PF00430_consen    2 LFWQLINFLILFFLLNKFLYKPIKK   26 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555556778888888888765

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=87.55  E-value=7.3  Score=33.78  Aligned_cols=30  Identities=17%  Similarity=-0.046  Sum_probs=18.1

Q ss_pred             CChhhhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177           91 FSSFFATGAFIIPASVYFLLKKFILKPYYL  120 (271)
Q Consensus        91 ~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~  120 (271)
                      +++....+-++-=+++++++++|.++|...
T Consensus        22 ~n~~~~~~~~Inflill~lL~~fl~kPI~~   51 (184)
T CHL00019         22 FNTDILETNLINLSVVLGVLIYFGKGVLSD   51 (184)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence            444333333444455677777888899765

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=85.89  E-value=6.1  Score=39.24  Aligned_cols=25  Identities=28%  Similarity=0.406  Sum_probs=16.8

Q ss_pred             hhhHhhHHHHHHHHHHhhhcchhhh
Q 024177           96 ATGAFIIPASVYFLLKKFILKPYYL  120 (271)
Q Consensus        96 ~~~a~v~P~~~~~~~~~~v~~P~~~  120 (271)
                      ++|-.+.=+++++++++|+++|..+
T Consensus         4 ~i~qlInFlIl~~lL~kfl~~Pi~~   28 (445)
T PRK13428          4 FIGQLIGFAVIVFLVWRFVVPPVRR   28 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444556777788888888665

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=85.06  E-value=7.9  Score=31.98  Aligned_cols=16  Identities=13%  Similarity=0.308  Sum_probs=11.5

Q ss_pred             HHHHHHHhhhcchhhh
Q 024177          105 SVYFLLKKFILKPYYL  120 (271)
Q Consensus       105 ~~~~~~~~~v~~P~~~  120 (271)
                      ++++++.+|+++|..+
T Consensus         7 il~~il~~~~~~pi~~   22 (147)
T TIGR01144         7 LLVWFCMKYVWPPLAK   22 (147)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4566677888888665

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=83.42  E-value=38  Score=34.28  Aligned_cols=108  Identities=19%  Similarity=0.267  Sum_probs=66.2

Q ss_pred             ceeeEEEEccccceEEEEEEEecCCCcceeEeEEEeeeeeEEEeeceeeeccc--eeEEEEEEEeeeeeEEEE-------
Q 024177            2 SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEF--STIRMLYSVGIQGIFWKF-------   72 (271)
Q Consensus         2 sw~~~~~~g~~~~~~s~~y~r~~~~~~~~r~~~~~gt~g~~~e~g~~rkvs~~--s~~g~~v~ig~~Gv~lkl-------   72 (271)
                      +|+..+..| ..+.++..+.+.-. ..++..+..+|+-++-..+...++..+.  +.+-+++.+|.-|+...+       
T Consensus       255 ~g~i~l~~g-~~Sa~ttt~~~~~~-~~s~a~~~~i~sp~~~~~~~y~~k~k~~~es~~kl~~k~gt~G~~ve~g~~RkvS  332 (546)
T KOG0718|consen  255 SGSIALNRG-IQSAMTTTWVHMKE-NPSLAVNLEIGSPHMYAGIAYTYKLKNATESQIKLSTKMGTFGLQVEYGTERKVS  332 (546)
T ss_pred             cceEEechh-hhhhheeeeeeccc-cccceeeeEecCCcceeeeeeeeecCccccceeEEEEEeeeeeEEeeccccceee
Confidence            688888889 55667777765432 2455666677665555556667777766  666666667666655422       


Q ss_pred             EEEEcCeE--EEEE--EEeec-------CCChhhhhhHhhHHHHHHHHHH
Q 024177           73 ELHRAGQK--LVVP--ILLSR-------HFSSFFATGAFIIPASVYFLLK  111 (271)
Q Consensus        73 ~~~R~gQ~--~~~P--I~Ls~-------~~~~~~~~~a~v~P~~~~~~~~  111 (271)
                      ++++.+-.  +.+|  |++.=       .+.+.+.++.-++|.+++.++-
T Consensus       333 ryStv~~~~svgvpsgi~~k~~~~R~~Q~~~~pI~l~d~~~p~avfya~v  382 (546)
T KOG0718|consen  333 RYSTVGANVSVGVPSGITLKVKLLRAGQKYSFPIHLCDELLPSAVFYALV  382 (546)
T ss_pred             eceeEEEEEEEcCCcceEEEEeeeccCcEEEEEEEeechhhhhhhhhhhh
Confidence            23333333  3345  33332       2455677888899988776653

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=82.71  E-value=15  Score=31.35  Aligned_cols=28  Identities=21%  Similarity=0.195  Sum_probs=14.6

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177          131 MEKTSAQVQEAKAAAQKAQQLLQNVANR  158 (271)
Q Consensus       131 r~~~~~~i~~~R~eA~~a~~Lm~~~a~r  158 (271)
                      +.+.++++..+|.||.+.++-.+..++.
T Consensus        64 ~~~~e~~L~~A~~ea~~Ii~~A~~~a~~   91 (167)
T PRK14475         64 LADVKAEREEAERQAAAMLAAAKADARR   91 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555566555555544444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 37/242 (15%), Positives = 68/242 (28%), Gaps = 66/242 (27%)

Query: 70  WKFELHRAGQKL--VV--------PILLSRHFSSFFATGAFIIPASVYF---LLKKFILK 116
           W    H    KL  ++        P    + F         + P S +    LL   ++ 
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-----VFPPSAHIPTILLS--LIW 396

Query: 117 PYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQL--LQNVANRKRNKQLEIGGLIITKA 174
              +K +    +  + K S   ++ K   +    +  +      K   +  +   I+   
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPK---ESTISIPSIYLELKVKLENEYALHRSIVDH- 452

Query: 175 VYGARKALTK---------------LG------ETGESSDELASQVLDVTLPLNFLVNDS 213
            Y   K                   +G      E  E         LD      FL    
Sbjct: 453 -YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD----FRFLEQ-- 505

Query: 214 GRLKL-HDGVKKSGIMGFCDSCPGEPKQL--YVEY-TYGGNRYEVFVDDYEELFIPQEAH 269
              K+ HD    +      ++     +QL  Y  Y      +YE  V+   + F+P+   
Sbjct: 506 ---KIRHDSTAWNASGSILNTL----QQLKFYKPYICDNDPKYERLVNAILD-FLPKIEE 557

Query: 270 RI 271
            +
Sbjct: 558 NL 559

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
2jx9_A	106	Latrophilin 1; lectin, beta-sandwich, disulphide,	90.55
2zx2_A	195	CSL3; lectin, rhamnose, innate immunity, immune sy	85.99
2zx2_A	195	CSL3; lectin, rhamnose, innate immunity, immune sy	80.24

>2jx9_A Latrophilin 1; lectin, beta-sandwich, disulphide, glycosylated, G-protein C receptor, membrane, receptor, transducer, transmembrane, CE adhesion; HET: NAG; NMR {Mus musculus} PDB: 2jxa_A*

Probab=90.55  E-value=0.14  Score=39.69  Aligned_cols=19  Identities=42%  Similarity=0.737  Sum_probs=16.6

Q ss_pred             CCCccCCCCCCCceEEEEEEE
Q 024177          227 IMGFCDSCPGEPKQLYVEYTY  247 (271)
Q Consensus       227 L~GF~DP~~g~~K~L~V~Y~f  247 (271)
                      ..|  |||||..|.|.|.|.=
T Consensus        82 ~Fg--DPCpgt~KyL~V~y~C  100 (106)
T 2jx9_A           82 AFP--DPCPGTYKYLEVQYDC  100 (106)
T ss_dssp             GSC--CSSTTSCCEEEEEEEE
T ss_pred             ccC--CCCCCccEEEEEEEEe
Confidence            346  9999999999999974

>2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar binding protein; HET: RAM; 1.80A {Oncorhynchus keta} PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A*

Probab=85.99  E-value=0.33  Score=41.47  Aligned_cols=32  Identities=19%  Similarity=0.245  Sum_probs=22.3

Q ss_pred             cCCCCCCCceEEEEEEECCeeEE--EEEcCCccc
Q 024177          231 CDSCPGEPKQLYVEYTYGGNRYE--VFVDDYEEL  262 (271)
Q Consensus       231 ~DP~~g~~K~L~V~Y~f~~~~h~--v~v~D~e~l  262 (271)
                      -|||||..|.|.|.|.=....+.  ..+-+++.+
T Consensus        78 gDPC~g~~KyL~V~y~C~~~~~~~~~~~CE~~~~  111 (195)
T 2zx2_A           78 GDPCVGTYKYLDTKYSCVQQQETISSIICEGSDS  111 (195)
T ss_dssp             CCSSTTSCCEEEEEEEEECSSCCEEEEEETTSEE
T ss_pred             CCCCCCceeeeeeeeeecccccccceecccccce
Confidence            39999999999999998543222  235555544

>2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar binding protein; HET: RAM; 1.80A {Oncorhynchus keta} PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A*

Probab=80.24  E-value=0.79  Score=39.06  Aligned_cols=18  Identities=50%  Similarity=0.850  Sum_probs=16.0

Q ss_pred             CCCccCCCCCCCceEEEEEE
Q 024177          227 IMGFCDSCPGEPKQLYVEYT  246 (271)
Q Consensus       227 L~GF~DP~~g~~K~L~V~Y~  246 (271)
                      ..|  |||||..|.|.|.|.
T Consensus       176 ~FG--DPC~gt~KyL~V~y~  193 (195)
T 2zx2_A          176 VFG--DPCVGTYKYLDVAYT  193 (195)
T ss_dssp             HHC--CSSTTSCCEEEEEEE
T ss_pred             cCC--CCCCCCCeEEEEEEE
Confidence            346  999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00