Citrus Sinensis ID: 024182

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMETSEKNSGWEDLIFIPPGKSHSQHIQEVAKV
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccHHHHHccccHHHHHHHcccccEEEEEcccccEEEEEccccccEEEEEEEcHHHHHHHHHHHHHHccccccccEEEEEEHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccccccccEEEccEEEEEEccEEEEEccccHHHHHHHHHHHHHHcccccccccEEEEEHHHHHHHHHcccccccccEEEEEcccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHccccEEEEEcccccEEEEEccccccEEEEEEEcHHHHHHHHHHHHHHcHHHccccEEEEEEHHHHEEEcccccEEEEcccHHHHHHHHHHHHcccccccccccEEEccEEEEEccccEEEEEEEcHHHHHHHHHHHHHHccccccccEEEEEcHHHHHHHHHccccccccccEEEEcccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mefpksqvltnpllslstFIHQNCLRLGSELSSRLDDTKRTLsrrlqrpplsvppfaflsqpKQALAATLSSDFVSKTLAGTAVYtvsnssnefvlisdpngaksiglLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGiafrflpdpAQIRNALELKaadvrtgfdgvpvfQSELLVVKkknkrycpvyfqkeDIEKELSKVsrasrgagvsqHIMVGSLEDVLKKMETseknsgwedlifippgkshsqHIQEVAKV
Flexible Loop (DISEMBL)
mefpksqvltnpllsLSTFIHQNCLRLGSELSSRLDDTKRTlsrrlqrpplsvppfAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELrsaakvvpitldqvYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQsellvvkkknkrycpvyfqkediekelSKVSrasrgagvsqhimvGSLEDVLKKMETSEKNSGWEDLIfippgkshsqhIQEVAKV
Low Complexity Region (SEG)
MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMETSEKNSGWEDLIFIPPGKSHSQHIQEVAKV
Disordered region (IsUnstruct)
*********TNPLLSLSTFIHQNCLRLG****************************AFL*****ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDI********************MV******************WEDLIFI****************
Disordered Region (DISOPRED)
***************LSTFIHQNCLRLGS***********************VPPFAF***********LSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFL****************VPITLDQVYMLKVEGIAFRFLPDPAQI**************FDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKE*****************MVGSLEDVLKKMETS***SGWEDLIFIPPGKSHSQHIQEVA**
Disordered Region (DISEMBL)
********LTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMETSEKNSGWEDLIFIPPGK************
Disordered Region (DISPRO)
********LTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAF********AATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMETSEKNSGWEDLIFIPPGKSHSQHIQEVAK*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMETSEKNSGWEDLIFIPPGKSHSQHIQEVAKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
Q9SZB2	268	Protein TIC 22, chloropla	yes	no	0.963	0.973	0.690	1e-104
Q9ZST9	252	Protein TIC 22, chloropla	N/A	no	0.918	0.988	0.700	1e-101
F4J469	313	Protein TIC 22-like, chlo	no	no	0.845	0.731	0.383	3e-36

>sp|Q9SZB2|TIC22_ARATH Protein TIC 22, chloroplastic OS=Arabidopsis thaliana GN=TIC22 PE=1 SV=1

 Score =  377 bits (967), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/271 (69%), Positives = 222/271 (81%), Gaps = 10/271 (3%)

Query: 5   KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR---TL-SRRLQRPPLSVPPFAFLS 60
           +S V  NP LS S+FIH  C R  S+LS+R++DTKR   TL +RR   P  + PPFA +S
Sbjct: 2   ESSVKPNPFLSFSSFIHHQCTRFSSDLSARIEDTKRFAETLATRRFSLP--TPPPFASVS 59

Query: 61  QPKQAL-AATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAF 119
           Q K      TLS   V+K LAGT+V+TVSN++NEFVLISDP G KSIGLLCFRQEDAEAF
Sbjct: 60  QSKSGTPTTTLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAF 119

Query: 120 LAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFD 179
           LAQ RLRR+EL++ AKVVPITLDQVY+LKVEGI+FRFLPDP QI+NALELK++  + GFD
Sbjct: 120 LAQARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNALELKSSGNKNGFD 179

Query: 180 GVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKK 239
           GVPVFQSELLVV+KKN+RYCPVYF KEDIE+ELSK +RASRG    Q IMVGSLEDVL+K
Sbjct: 180 GVPVFQSELLVVRKKNRRYCPVYFSKEDIERELSKYTRASRG---DQQIMVGSLEDVLRK 236

Query: 240 METSEKNSGWEDLIFIPPGKSHSQHIQEVAK 270
           ME SEKNSGWED+IFIPPG+S++QH+Q++ K
Sbjct: 237 MEMSEKNSGWEDVIFIPPGRSYAQHMQDLIK 267

Involved in protein precursor import into chloroplasts. Imported into the intermembrane space via the Toc translocon. May be involved in the import pathway used by proteins without a cleavable N-terminal pre-sequence.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZST9|TIC22_PEA Protein TIC 22, chloroplastic OS=Pisum sativum GN=TIC22 PE=1 SV=1

 Score =  367 bits (943), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/264 (70%), Positives = 212/264 (80%), Gaps = 15/264 (5%)

Query: 5   KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQ 64
           +SQ   NPLLS S FI+ +     + L++RL++TKR     +Q    + P FA       
Sbjct: 2   ESQGQWNPLLSFSRFINHHS----NHLATRLEETKRLAGTLIQSHTRTKPAFA------- 50

Query: 65  ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVR 124
              ATL+ + V+K+LAGT+VYTVSNS NEFVL+SD  GAKSIGLLCFRQEDAEAFLAQVR
Sbjct: 51  ---ATLTPNHVAKSLAGTSVYTVSNSDNEFVLMSDAEGAKSIGLLCFRQEDAEAFLAQVR 107

Query: 125 LRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVF 184
            R+KE R  AKVVPITLDQVYMLKVEGIAFRFLPDP QI+NALEL+AA+ R  FDGVPVF
Sbjct: 108 SRKKEFRGGAKVVPITLDQVYMLKVEGIAFRFLPDPVQIKNALELRAAN-RGSFDGVPVF 166

Query: 185 QSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMETSE 244
           QS+LLVVKKKNKRYCPVYF KED+E ELSKVSR+S+G GVSQHIMVGS EDVLKKME SE
Sbjct: 167 QSDLLVVKKKNKRYCPVYFSKEDLEYELSKVSRSSKGVGVSQHIMVGSFEDVLKKMELSE 226

Query: 245 KNSGWEDLIFIPPGKSHSQHIQEV 268
           K+SGWEDL+FIPPGK HSQH+QEV
Sbjct: 227 KSSGWEDLVFIPPGKKHSQHMQEV 250

Involved in protein precursor import into chloroplasts. Imported into the intermembrane space via the Toc translocon. May be involved in the import pathway used by proteins without a cleavable N-terminal pre-sequence.

Pisum sativum (taxid: 3888)

>sp|F4J469|TI22L_ARATH Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana GN=TIC22L PE=3 SV=1

 Score =  152 bits (383), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/248 (38%), Positives = 140/248 (56%), Gaps = 19/248 (7%)

Query: 29  SELSSRLDDTKRTLSRRLQR-PPLSVPPFAFLSQ-----------PKQALAATLSSDFVS 76
           S L+S  D  K+ L  R+ R      P +A +S            P +     LS+D + 
Sbjct: 57  SALNSFRDQAKQALDSRISRFNSGKAPVWARISDDGGGARAQVTVPIRGSGKGLSADAIE 116

Query: 77  KTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELR-SAAK 135
           + LAG  VY +SNS+ EFVL+S  +  KS+GLL  ++EDAE  L +++     +R   +K
Sbjct: 117 ERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPRMRKEGSK 176

Query: 136 VVPITLDQVYMLKVEGIAFRFLPDPAQIRNAL-ELKAADV-RTGFDGVPVFQSELLVVKK 193
           VV + L +V+ LKV G+AFR +P+  Q++NAL E K A +    F GVPVFQS+ L+++ 
Sbjct: 177 VVALALSKVFQLKVNGVAFRLIPESTQVKNALKERKTAGIDDDDFHGVPVFQSKSLILRS 236

Query: 194 KNKRYCPVYFQKEDIEKELSKVSRASRGAGVS---QHIMVGSLEDVLKKMETSEKNSGWE 250
           +N  Y PV+F+KED+EK L + S        +     I V   ED++K M  S   S W+
Sbjct: 237 ENMSYRPVFFRKEDLEKSLIRASSQQNRLNPALKPGDIQVAVFEDIVKGMRES-TTSNWD 295

Query: 251 DLIFIPPG 258
           D++FIPPG
Sbjct: 296 DIVFIPPG 303

Involved in protein precursor import into chloroplasts.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
224067266	273	predicted protein [Populus trichocarpa]	0.959	0.952	0.814	1e-121
224136756	273	predicted protein [Populus trichocarpa]	0.955	0.948	0.813	1e-120
255538318	272	protein translocase, putative [Ricinus c	0.963	0.959	0.802	1e-119
225458599	277	PREDICTED: protein TIC 22, chloroplastic	0.974	0.953	0.769	1e-117
449446989	277	PREDICTED: protein TIC 22, chloroplastic	0.992	0.971	0.718	1e-108
356519218	260	PREDICTED: uncharacterized protein LOC10	0.929	0.969	0.756	1e-104
356510391	258	PREDICTED: uncharacterized protein LOC10	0.933	0.980	0.755	1e-102
15234162	268	Tic22-like protein [Arabidopsis thaliana	0.963	0.973	0.690	1e-102
302142324	217	unnamed protein product [Vitis vinifera]	0.767	0.958	0.850	1e-101
357465499	252	Tic22 [Medicago truncatula] gi|355492082	0.918	0.988	0.704	1e-100

>gi|224067266|ref|XP_002302438.1| predicted protein [Populus trichocarpa] gi|222844164|gb|EEE81711.1| predicted protein [Populus trichocarpa]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/269 (81%), Positives = 236/269 (87%), Gaps = 9/269 (3%)

Query: 10  TNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLS------RRLQRPPLSVPPFAFLSQPK 63
           +NPLLSLSTFIH +CLRLG+E S+R+ DT R L       RRL   P   PPFA +SQPK
Sbjct: 7   SNPLLSLSTFIHHHCLRLGAEFSTRISDTTRFLGGNLPPPRRLCLAP--SPPFASVSQPK 64

Query: 64  Q-ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ 122
           Q A  A LSSD V+KTLAGTAVYTVSNS+NEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ
Sbjct: 65  QTATTANLSSDHVAKTLAGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ 124

Query: 123 VRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVP 182
           VRLRR+ELRS AKVVPITLDQVYMLKVEGIAFRFLPDP QI+NALELKA D+R+GFDGVP
Sbjct: 125 VRLRRRELRSQAKVVPITLDQVYMLKVEGIAFRFLPDPVQIKNALELKAVDIRSGFDGVP 184

Query: 183 VFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMET 242
           VFQS+LLVVKKKNKRYCP+YFQKEDIEKELSKVS+ASRG  +SQHIMVGSLEDVLKKME 
Sbjct: 185 VFQSDLLVVKKKNKRYCPIYFQKEDIEKELSKVSKASRGPSLSQHIMVGSLEDVLKKMEI 244

Query: 243 SEKNSGWEDLIFIPPGKSHSQHIQEVAKV 271
           SEK SGWEDLIFIPPGKSHSQHI E+ KV
Sbjct: 245 SEKKSGWEDLIFIPPGKSHSQHIHEITKV 273

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136756|ref|XP_002326937.1| predicted protein [Populus trichocarpa] gi|222835252|gb|EEE73687.1| predicted protein [Populus trichocarpa]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/268 (81%), Positives = 236/268 (88%), Gaps = 9/268 (3%)

Query: 10  TNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLS------VPPFAFLSQPK 63
           +NPLLSLST IHQ+CLRLG+E S+R+ DT R L+     PP S       PPFA +SQPK
Sbjct: 7   SNPLLSLSTVIHQHCLRLGAEFSARVSDTTRFLAGNF--PPPSRLRLAPSPPFASVSQPK 64

Query: 64  Q-ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ 122
           Q A  A LSS+ V+K LAGTAVYTVSNS NEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ
Sbjct: 65  QTANTANLSSEHVAKALAGTAVYTVSNSDNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ 124

Query: 123 VRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVP 182
           VRLRR+ELRS AKVVPITLDQVYMLKVEGIAFRFLPDP QI+NALELK+ADVR+GFDGVP
Sbjct: 125 VRLRRRELRSQAKVVPITLDQVYMLKVEGIAFRFLPDPVQIKNALELKSADVRSGFDGVP 184

Query: 183 VFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMET 242
           VFQS+ L+VKKK+KRYCPVYFQKEDIEKELSKVSRASRG G+SQHIMVGSLEDVLKKME 
Sbjct: 185 VFQSDQLIVKKKSKRYCPVYFQKEDIEKELSKVSRASRGPGLSQHIMVGSLEDVLKKMEI 244

Query: 243 SEKNSGWEDLIFIPPGKSHSQHIQEVAK 270
           SEKNSGWEDLIFIPPGKSHSQHIQE+ K
Sbjct: 245 SEKNSGWEDLIFIPPGKSHSQHIQEITK 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538318|ref|XP_002510224.1| protein translocase, putative [Ricinus communis] gi|223550925|gb|EEF52411.1| protein translocase, putative [Ricinus communis]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/269 (80%), Positives = 238/269 (88%), Gaps = 8/269 (2%)

Query: 9   LTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRL-----QRPPLSVPPFAFLSQ-P 62
           L+NPLLSLSTFIHQ+CLRLG+ELS+RL DT   +S  L      R     P FA +SQ P
Sbjct: 6   LSNPLLSLSTFIHQHCLRLGAELSTRLGDTTWAVSNNLLPGLNNRKHRPAPLFASVSQQP 65

Query: 63  KQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ 122
           KQA  + LSS+ V+KTLAGTAVYTVSNS+NEFVL+SDP+GAKSI LLCFRQEDAEAFLAQ
Sbjct: 66  KQA--SGLSSEHVAKTLAGTAVYTVSNSNNEFVLVSDPDGAKSISLLCFRQEDAEAFLAQ 123

Query: 123 VRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVP 182
           VRLRR+ELRS A++VPITLDQVYMLKVEGIAFRFLPDP QI+NALELKA+D + GFDGVP
Sbjct: 124 VRLRRRELRSQARIVPITLDQVYMLKVEGIAFRFLPDPVQIKNALELKASDTKRGFDGVP 183

Query: 183 VFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMET 242
           +FQSELLVVKKKNKRYCP+YFQKEDIEKELSKVSRASRG G+SQHIMVGSLEDVL+KME 
Sbjct: 184 IFQSELLVVKKKNKRYCPIYFQKEDIEKELSKVSRASRGPGLSQHIMVGSLEDVLRKMEM 243

Query: 243 SEKNSGWEDLIFIPPGKSHSQHIQEVAKV 271
           SEKNSGWEDLIFIPPGKSHSQHIQEVAKV
Sbjct: 244 SEKNSGWEDLIFIPPGKSHSQHIQEVAKV 272

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458599|ref|XP_002284687.1| PREDICTED: protein TIC 22, chloroplastic-like isoform 1 [Vitis vinifera] gi|359492043|ref|XP_003634356.1| PREDICTED: protein TIC 22, chloroplastic-like isoform 2 [Vitis vinifera]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/282 (76%), Positives = 241/282 (85%), Gaps = 18/282 (6%)

Query: 1   MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR--------TLSRRLQRPPLS 52
           ME PK    +NPLLS STFIHQ+CLRLG+EL+SRLDDT+R         L R L   PLS
Sbjct: 1   MEPPKP---SNPLLSFSTFIHQHCLRLGAELASRLDDTRRLAGNWPPPALRRSL---PLS 54

Query: 53  VPPFAFLSQ----PKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGL 108
             PFA +SQ     K+ L   LSSD V+K+LAGTAVYTVSNS+NEFVLISDPNG KSIGL
Sbjct: 55  SLPFASMSQEARGAKRDLGVALSSDHVAKSLAGTAVYTVSNSNNEFVLISDPNGIKSIGL 114

Query: 109 LCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALE 168
           LCFRQEDAEAFLAQV+ R +ELRS A+VVPI+LDQVYMLKVEGIAFRFLPDP QI+NALE
Sbjct: 115 LCFRQEDAEAFLAQVQSRTRELRSQARVVPISLDQVYMLKVEGIAFRFLPDPVQIKNALE 174

Query: 169 LKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHI 228
           LKAAD+++GFDGVPVFQS+LLVVKKKN+RYCP+YFQKEDI KELSKVSR+SRG GV+QHI
Sbjct: 175 LKAADIKSGFDGVPVFQSDLLVVKKKNRRYCPIYFQKEDIVKELSKVSRSSRGPGVTQHI 234

Query: 229 MVGSLEDVLKKMETSEKNSGWEDLIFIPPGKSHSQHIQEVAK 270
           MVGSLEDVL+KMETSEKNSGWEDLIFIPPGKSHSQHIQEV K
Sbjct: 235 MVGSLEDVLRKMETSEKNSGWEDLIFIPPGKSHSQHIQEVTK 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446989|ref|XP_004141252.1| PREDICTED: protein TIC 22, chloroplastic-like [Cucumis sativus]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/277 (71%), Positives = 228/277 (82%), Gaps = 8/277 (2%)

Query: 1   MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR---TLSRRL----QRPPLSV 53
           ME PK    +NPL+S+S+FIH +C +LG+ELS+RL+DTKR   TL+RR            
Sbjct: 1   MEIPKPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPT 60

Query: 54  PPFAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQ 113
           P FA L++   ALAATLS D V+K+L GTAVYTVSNS+NEFVLISDPNGAKSIGLLCFR+
Sbjct: 61  PAFASLARHTHALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRK 120

Query: 114 EDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAAD 173
           EDAE FLAQVR R++ELRS AKVVPITLDQVY+LKVEGIAFRFLPDP Q++NALELKA++
Sbjct: 121 EDAETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALELKASE 180

Query: 174 VRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSL 233
             + FDGVPVFQS+LL+VKKKNKRYCP+YF KEDIEKEL KV +A R  G SQHIMVGSL
Sbjct: 181 TGSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELLKVPKARR-FGTSQHIMVGSL 239

Query: 234 EDVLKKMETSEKNSGWEDLIFIPPGKSHSQHIQEVAK 270
           EDVLKKME +E NS WEDLIFIPPGKSHSQH QEV K
Sbjct: 240 EDVLKKMELNENNSAWEDLIFIPPGKSHSQHFQEVGK 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519218|ref|XP_003528270.1| PREDICTED: uncharacterized protein LOC100802286 [Glycine max]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/259 (75%), Positives = 220/259 (84%), Gaps = 7/259 (2%)

Query: 10  TNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQALAAT 69
           +NPLLS S+FIHQ+C+RLGS+L++RLDDTKR L++      L  P          A  AT
Sbjct: 7   SNPLLSFSSFIHQHCVRLGSDLATRLDDTKRALAQSHHN--LVFPK----HALAHAATAT 60

Query: 70  LSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKE 129
           L S  V+K+L GT+V+TVSNS+NEFVLISDP+GAKSIGLLCFRQEDAEAFLAQVR R +E
Sbjct: 61  LGSQHVAKSLVGTSVFTVSNSNNEFVLISDPDGAKSIGLLCFRQEDAEAFLAQVRSRSRE 120

Query: 130 LRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELL 189
           LRS A+VVPITLDQVYMLKVEGIAFRFLPDP QIRNALELK  + + GFDGVPVFQSELL
Sbjct: 121 LRSKARVVPITLDQVYMLKVEGIAFRFLPDPVQIRNALELKPVN-KGGFDGVPVFQSELL 179

Query: 190 VVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMETSEKNSGW 249
           VVKK+NKRYCPVYF KEDIE+ELSKVSRASRG GVSQHI VGSLEDVL+KME SE+NSGW
Sbjct: 180 VVKKRNKRYCPVYFSKEDIEQELSKVSRASRGPGVSQHIAVGSLEDVLRKMEMSERNSGW 239

Query: 250 EDLIFIPPGKSHSQHIQEV 268
           EDLIFIPPGKS SQHIQE+
Sbjct: 240 EDLIFIPPGKSRSQHIQEL 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510391|ref|XP_003523922.1| PREDICTED: uncharacterized protein LOC100802935 isoform 1 [Glycine max]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/266 (75%), Positives = 225/266 (84%), Gaps = 13/266 (4%)

Query: 5   KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQ 64
           +S+  +NPLLS S+FIHQ+C+RLGS+L++RLDDTKR L++              L  PK 
Sbjct: 2   ESRGHSNPLLSFSSFIHQHCVRLGSDLATRLDDTKRALAQAHHN----------LLFPKH 51

Query: 65  ALAAT--LSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ 122
           ALAAT  L S  V+K+L GT+VYTVSNS+NEFVLISD +GAKSIGLLCFRQEDAEAFLAQ
Sbjct: 52  ALAATSTLGSLHVAKSLVGTSVYTVSNSNNEFVLISDADGAKSIGLLCFRQEDAEAFLAQ 111

Query: 123 VRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVP 182
           VR R +ELRS A+VVPITLDQVYMLKVEGIAFRFLPDP QIRNALELK A+ + GFDGVP
Sbjct: 112 VRSRSRELRSKARVVPITLDQVYMLKVEGIAFRFLPDPVQIRNALELKPAN-KGGFDGVP 170

Query: 183 VFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMET 242
           VFQSELLVVKKK KRYCPVYF KEDIE+ELSKVSRASRG GVSQHI VGSLEDVL+KME 
Sbjct: 171 VFQSELLVVKKKKKRYCPVYFSKEDIEQELSKVSRASRGPGVSQHIAVGSLEDVLRKMEM 230

Query: 243 SEKNSGWEDLIFIPPGKSHSQHIQEV 268
           SE+NSGWEDLIFIPPGKS SQHIQE+
Sbjct: 231 SERNSGWEDLIFIPPGKSRSQHIQEL 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234162|ref|NP_195061.1| Tic22-like protein [Arabidopsis thaliana] gi|75213572|sp|Q9SZB2.1|TIC22_ARATH RecName: Full=Protein TIC 22, chloroplastic; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 22; Short=AtTIC22; Flags: Precursor gi|4490302|emb|CAB38793.1| Tic22-like protein [Arabidopsis thaliana] gi|7270283|emb|CAB80052.1| Tic22-like protein [Arabidopsis thaliana] gi|26452624|dbj|BAC43395.1| Tic22 like protein [Arabidopsis thaliana] gi|28973025|gb|AAO63837.1| putative Tic22 protein [Arabidopsis thaliana] gi|332660809|gb|AEE86209.1| Tic22-like protein [Arabidopsis thaliana]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/271 (69%), Positives = 222/271 (81%), Gaps = 10/271 (3%)

Query: 5   KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR---TL-SRRLQRPPLSVPPFAFLS 60
           +S V  NP LS S+FIH  C R  S+LS+R++DTKR   TL +RR   P  + PPFA +S
Sbjct: 2   ESSVKPNPFLSFSSFIHHQCTRFSSDLSARIEDTKRFAETLATRRFSLP--TPPPFASVS 59

Query: 61  QPKQAL-AATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAF 119
           Q K      TLS   V+K LAGT+V+TVSN++NEFVLISDP G KSIGLLCFRQEDAEAF
Sbjct: 60  QSKSGTPTTTLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAF 119

Query: 120 LAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFD 179
           LAQ RLRR+EL++ AKVVPITLDQVY+LKVEGI+FRFLPDP QI+NALELK++  + GFD
Sbjct: 120 LAQARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNALELKSSGNKNGFD 179

Query: 180 GVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKK 239
           GVPVFQSELLVV+KKN+RYCPVYF KEDIE+ELSK +RASRG    Q IMVGSLEDVL+K
Sbjct: 180 GVPVFQSELLVVRKKNRRYCPVYFSKEDIERELSKYTRASRG---DQQIMVGSLEDVLRK 236

Query: 240 METSEKNSGWEDLIFIPPGKSHSQHIQEVAK 270
           ME SEKNSGWED+IFIPPG+S++QH+Q++ K
Sbjct: 237 MEMSEKNSGWEDVIFIPPGRSYAQHMQDLIK 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142324|emb|CBI19527.3| unnamed protein product [Vitis vinifera]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/208 (85%), Positives = 195/208 (93%)

Query: 63  KQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ 122
           K+ L   LSSD V+K+LAGTAVYTVSNS+NEFVLISDPNG KSIGLLCFRQEDAEAFLAQ
Sbjct: 9   KRDLGVALSSDHVAKSLAGTAVYTVSNSNNEFVLISDPNGIKSIGLLCFRQEDAEAFLAQ 68

Query: 123 VRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVP 182
           V+ R +ELRS A+VVPI+LDQVYMLKVEGIAFRFLPDP QI+NALELKAAD+++GFDGVP
Sbjct: 69  VQSRTRELRSQARVVPISLDQVYMLKVEGIAFRFLPDPVQIKNALELKAADIKSGFDGVP 128

Query: 183 VFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMET 242
           VFQS+LLVVKKKN+RYCP+YFQKEDI KELSKVSR+SRG GV+QHIMVGSLEDVL+KMET
Sbjct: 129 VFQSDLLVVKKKNRRYCPIYFQKEDIVKELSKVSRSSRGPGVTQHIMVGSLEDVLRKMET 188

Query: 243 SEKNSGWEDLIFIPPGKSHSQHIQEVAK 270
           SEKNSGWEDLIFIPPGKSHSQHIQEV K
Sbjct: 189 SEKNSGWEDLIFIPPGKSHSQHIQEVTK 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465499|ref|XP_003603034.1| Tic22 [Medicago truncatula] gi|355492082|gb|AES73285.1| Tic22 [Medicago truncatula]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/264 (70%), Positives = 214/264 (81%), Gaps = 15/264 (5%)

Query: 5   KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQ 64
           +SQ   NPLLS S FIHQNC    + L++R +DT++     +Q    + P FA       
Sbjct: 2   ESQGQWNPLLSFSRFIHQNC----NHLATRFEDTRKFAGTLIQSHTRTKPAFA------- 50

Query: 65  ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVR 124
              ATL+S+ V+K+LAGT+VYTVS+S+NEFVL+SD  GAKSIGLLCFRQEDAEAFLAQVR
Sbjct: 51  ---ATLTSNHVAKSLAGTSVYTVSSSNNEFVLMSDAEGAKSIGLLCFRQEDAEAFLAQVR 107

Query: 125 LRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVF 184
            R+ E R  AKVVPITL+QVY+LKVEGIAFRFLPDP QIRNALEL+AA+ + GFDGVPVF
Sbjct: 108 SRKNEFRGNAKVVPITLEQVYLLKVEGIAFRFLPDPLQIRNALELRAAN-KEGFDGVPVF 166

Query: 185 QSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMETSE 244
           QSELLVVKKKNKRYCPVYF KEDIE+ELSKVSR S+G GVS+ IMVGS EDVLKKME SE
Sbjct: 167 QSELLVVKKKNKRYCPVYFSKEDIEQELSKVSRVSKGPGVSKQIMVGSFEDVLKKMEMSE 226

Query: 245 KNSGWEDLIFIPPGKSHSQHIQEV 268
           KNSGW+DLIFIPPGKS SQHIQE+
Sbjct: 227 KNSGWDDLIFIPPGKSRSQHIQEI 250

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2119146	268	Tic22-IV "translocon at the in	0.963	0.973	0.690	4.3e-93
TAIR|locus:2095213	313	Tic22-III "translocon at the i	0.952	0.824	0.373	3.4e-38
UNIPROTKB|Q55386	286	slr0924 "Slr0924 protein" [Syn	0.664	0.629	0.235	2.7e-08

TAIR|locus:2119146 Tic22-IV "translocon at the inner envelope membrane of chloroplasts 22-IV" [Arabidopsis thaliana (taxid:3702)]

 Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
 Identities = 187/271 (69%), Positives = 222/271 (81%)

Query:     5 KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR---TLS-RRLQRPPLSVPPFAFLS 60
             +S V  NP LS S+FIH  C R  S+LS+R++DTKR   TL+ RR   P  + PPFA +S
Sbjct:     2 ESSVKPNPFLSFSSFIHHQCTRFSSDLSARIEDTKRFAETLATRRFSLP--TPPPFASVS 59

Query:    61 QPKQAL-AATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAF 119
             Q K      TLS   V+K LAGT+V+TVSN++NEFVLISDP G KSIGLLCFRQEDAEAF
Sbjct:    60 QSKSGTPTTTLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAF 119

Query:   120 LAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFD 179
             LAQ RLRR+EL++ AKVVPITLDQVY+LKVEGI+FRFLPDP QI+NALELK++  + GFD
Sbjct:   120 LAQARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNALELKSSGNKNGFD 179

Query:   180 GVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKK 239
             GVPVFQSELLVV+KKN+RYCPVYF KEDIE+ELSK +RASRG    Q IMVGSLEDVL+K
Sbjct:   180 GVPVFQSELLVVRKKNRRYCPVYFSKEDIERELSKYTRASRG---DQQIMVGSLEDVLRK 236

Query:   240 METSEKNSGWEDLIFIPPGKSHSQHIQEVAK 270
             ME SEKNSGWED+IFIPPG+S++QH+Q++ K
Sbjct:   237 MEMSEKNSGWEDVIFIPPGRSYAQHMQDLIK 267

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2095213 Tic22-III "translocon at the inner envelope membrane of chloroplasts 22-III" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 105/281 (37%), Positives = 157/281 (55%)

Query:     6 SQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQR-PPLSVPPFAFLSQ--- 61
             SQ L NPL + +T  + N   + S L+S  D  K+ L  R+ R      P +A +S    
Sbjct:    37 SQTL-NPLFNANT--NNNKPNIFSALNSFRDQAKQALDSRISRFNSGKAPVWARISDDGG 93

Query:    62 --------PKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQ 113
                     P +     LS+D + + LAG  VY +SNS+ EFVL+S  +  KS+GLL  ++
Sbjct:    94 GARAQVTVPIRGSGKGLSADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKE 153

Query:   114 EDAEAFLAQVRLRRKELRS-AAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNAL-ELKA 171
             EDAE  L +++     +R   +KVV + L +V+ LKV G+AFR +P+  Q++NAL E K 
Sbjct:   154 EDAETLLKEMKSMDPRMRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALKERKT 213

Query:   172 ADVRTG-FDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQH--- 227
             A +    F GVPVFQS+ L+++ +N  Y PV+F+KED+EK L + S        +     
Sbjct:   214 AGIDDDDFHGVPVFQSKSLILRSENMSYRPVFFRKEDLEKSLIRASSQQNRLNPALKPGD 273

Query:   228 IMVGSLEDVLKKMETSEKNSGWEDLIFIPPG-KSHSQHIQE 267
             I V   ED++K M  S   S W+D++FIPPG +  ++  QE
Sbjct:   274 IQVAVFEDIVKGMREST-TSNWDDIVFIPPGFEVSTEQTQE 313

GO:0009507 "chloroplast" evidence=ISM

GO:0009706 "chloroplast inner membrane" evidence=ISS

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|Q55386 slr0924 "Slr0924 protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 148 (57.2 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 47/200 (23%), Positives = 103/200 (51%)

Query:    58 FLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNE-FVLISDPNGAKSIGLLCFRQEDA 116
             +L    QALA  L ++ V K L G  V+T+ ++     V + + N  K  G+   +QE A
Sbjct:    66 WLGTTLQALA--LPTEEVVKILQGVPVFTIVDAQGAPLVAVGNDN-EKVTGVFISQQE-A 121

Query:   117 EAFLAQVRLRRKELRSAAKVVPITLDQVYML------KVEGIAFRFLPDPAQIRNALELK 170
               FL +++ ++ ++ S   V P++L +V  +      + + + F ++P PAQ++ A ++ 
Sbjct:   122 NGFLQELKKQKPDVGSQVSVQPVSLGEVVKIAQANANQTDPLGFAYVPIPAQVQAAQQMP 181

Query:   171 AADVRTGFDGVPVFQSE------LLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGV 224
              ++ +    GVP+F +        L ++++N++  P + +   I++ + +  +       
Sbjct:   182 NSEYQ---GGVPLFVARGGEDQGYLTIQQENEQIIPFFLEASQIQQMVERFKQEQPAMAD 238

Query:   225 SQHIMVGSLEDVLKKMETSE 244
             S  I V ++E+V+  ++TS+
Sbjct:   239 SIVIDVIAMENVISTLQTSD 258


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      271       271   0.00098  114 3  11 22  0.49    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  166 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.26u 0.16s 25.42t   Elapsed:  00:00:01
  Total cpu time:  25.26u 0.16s 25.42t   Elapsed:  00:00:01
  Start:  Thu May  9 16:37:30 2013   End:  Thu May  9 16:37:31 2013

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SZB2	TIC22_ARATH	No assigned EC number	0.6900	0.9630	0.9738	yes	no
Q9ZST9	TIC22_PEA	No assigned EC number	0.7007	0.9188	0.9880	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_400714 hypothetical protein (273 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
TIGR00995	270	TIGR00995, 3a0901s06TIC22, chloroplast protein imp	1e-122
pfam04278	270	pfam04278, Tic22, Tic22-like family	6e-86

>gnl|CDD|233226 TIGR00995, 3a0901s06TIC22, chloroplast protein import component, Tic22 family

 Score =  349 bits (896), Expect = e-122
 Identities = 168/268 (62%), Positives = 193/268 (72%), Gaps = 4/268 (1%)

Query: 6   SQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPL--SVPPFAFLSQPK 63
           S    NP LS S FI          L SRL++TKRT    L+      ++P FA  +   
Sbjct: 3   SSFRRNPFLSFSRFIKHKIFVKIKFLLSRLEETKRTAKTLLRIGATLGTIPTFAIGTWLG 62

Query: 64  QAL-AATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ 122
             L A TL  + V+K LAGT+V+TVSN+ NEFVL SD +G KSIGLLCFRQEDAEAFLAQ
Sbjct: 63  TTLQALTLPPEEVAKILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQEDAEAFLAQ 122

Query: 123 VRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVP 182
           +R R+ E+ S AKVVPITLDQVY LKVEGI FRFLPDPAQI+NALEL AA+    FDGVP
Sbjct: 123 LRKRKPEVGSQAKVVPITLDQVYKLKVEGIGFRFLPDPAQIKNALELPAAN-SEYFDGVP 181

Query: 183 VFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMET 242
           VFQS LLVV+KKN+RYCPVYF KEDIE+ELSK  R S G   SQ IMVGS+EDVL KMET
Sbjct: 182 VFQSGLLVVQKKNERYCPVYFSKEDIEQELSKFKRESPGMADSQVIMVGSMEDVLSKMET 241

Query: 243 SEKNSGWEDLIFIPPGKSHSQHIQEVAK 270
           SEK+SGWED IFIPPG+   QH+Q +  
Sbjct: 242 SEKDSGWEDQIFIPPGQEAIQHMQSLIA 269

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein [Transport and binding proteins, Amino acids, peptides and amines]. Length = 270

>gnl|CDD|218002 pfam04278, Tic22, Tic22-like family

 Score =  257 bits (658), Expect = 6e-86
 Identities = 116/268 (43%), Positives = 153/268 (57%), Gaps = 19/268 (7%)

Query: 20  IHQNCLRLGSELSSRLDDTKR-TLSRRLQRPPLSVPPFA---FLSQPKQALAATLSSDFV 75
              + L     L +R     R  L+  L      +P  A    L       A  LS D V
Sbjct: 5   FISHFLPKQIGLIARFKSLSRLALTLGLSGFLGLLPALALGSSLGSFAPTSAFALSEDEV 64

Query: 76  SKTLAGTAVYTVSNSSNEFVLISDPN-GAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAA 134
           ++ LAG  V+T++NS+ E +L+S  N G KS+GLL F QEDAEAFL +++ +  EL S A
Sbjct: 65  AEKLAGVPVFTITNSNGEPLLVSGKNGGGKSVGLLFFSQEDAEAFLKELKKQNPELASGA 124

Query: 135 KVVPITLDQVYML------KVEGIAFRFLPDPAQIRNALEL-KAADVR-TGFDGVPVFQS 186
           KVVPI+L QVY L      KVEG+AFRF+PDP Q++NALEL K        F GVPVFQ+
Sbjct: 125 KVVPISLGQVYKLAQSNQKKVEGLAFRFVPDPKQVKNALELLKKNGQNVNDFRGVPVFQA 184

Query: 187 EL----LVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMET 242
                 L +++ NK+Y P +F KED+++ L +  R       S  I V SLEDVLKKM T
Sbjct: 185 RSGEGYLTIQQDNKQYIPFFFSKEDLQRMLDRAKRQQPDLASSVKIEVISLEDVLKKMLT 244

Query: 243 SEKNSGWEDLIFIPPGKSHSQHIQEVAK 270
           S+ +S W+ +IFIPPGKS     Q + K
Sbjct: 245 SD-DSEWDKIIFIPPGKSLEFV-QSLIK 270

The preprotein translocation at the inner envelope membrane of chloroplasts so far involves five proteins: Tic110, Tic55, Tic40, Tic22 (this family) and Tic20. The molecular function of these proteins has not yet been established. Length = 270

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
TIGR00995	270	3a0901s06TIC22 chloroplast protein import componen	100.0
PF04278	274	Tic22: Tic22-like family; InterPro: IPR007378 Chlo	100.0
PF04278	274	Tic22: Tic22-like family; InterPro: IPR007378 Chlo	99.4
TIGR00995	270	3a0901s06TIC22 chloroplast protein import componen	99.29
PF11360	86	DUF3110: Protein of unknown function (DUF3110); In	93.4
PF07179	124	SseB: SseB protein N-terminal domain; InterPro: IP	81.98

>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family

Probab=100.00  E-value=1.2e-70  Score=500.48  Aligned_cols=264  Identities=63%  Similarity=0.899  Sum_probs=233.6

Q ss_pred             CCCCCCCcchhhhhHHHHHhhhhhccccccchhhhhhhhcc--CCCCCC-CCCeeeecCc-chhhhccCChHHHHhhcCC
Q 024182            6 SQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRL--QRPPLS-VPPFAFLSQP-KQALAATLSSDFVSKTLAG   81 (271)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~a~v~~~-~~~~a~aL~~~~i~ekL~~   81 (271)
                      ++..+|||+++|+||||||.|++++|++|+.+|++ +...|  -+.++. .+..+..|.. ...+|+|||++||+++|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~mksL~r~~~~lgl~~~~~~~s~l~~~~~alAL~e~eV~ekL~~   81 (270)
T TIGR00995         3 SSFRRNPFLSFSRFIKHKIFVKIKFLLSRLEETKR-TAKTLLRIGATLGTIPTFAIGTWLGTTLQALTLPPEEVAKILAG   81 (270)
T ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhccchHhhhhhhhccccccccCCHHHHHHHhcC
Confidence            34589999999999999999999999999988877 44333  111111 1111222222 2368999999999999999


Q ss_pred             ccEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHHhhhcCCeeEEEecCHH
Q 024182           82 TAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPA  161 (271)
Q Consensus        82 VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~s~~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~lk~~~i~f~fvP~~~  161 (271)
                      ||||+|+|++|+||++++++|++++++||++++||++||+++|++||++++++||++++||+||+++.+++.|+|+|+++
T Consensus        82 VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~qedA~afL~~lk~~~p~l~~~~kV~pvsL~~vYkl~~e~l~F~fiP~~~  161 (270)
T TIGR00995        82 TSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQEDAEAFLAQLRKRKPEVGSQAKVVPITLDQVYKLKVEGIGFRFLPDPA  161 (270)
T ss_pred             CceEEEEcCCCCeEEEECCCCCceEEEEECCHHHHHHHHHHHHhhCccccCCceEEEEEHHHHHHHhhcCccEEEeCCHH
Confidence            99999999999999999999888888877788889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhccCCCCCCceEEeccceeEeeCCeEEeeeeecHHHHHHHHHHHHHhcCCCCCcceEEEEeHHHHHHHHh
Q 024182          162 QIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKME  241 (271)
Q Consensus       162 qv~~A~~L~~~~~~~~f~GVPVF~~~~Lti~~~~~~~~PvFFskeDl~~~l~~~kk~~p~~~~~~~I~V~~Le~vi~~m~  241 (271)
                      ||++|++|+ ++++++++|||||++++||++++|++|||+||+||||+++|+++++++|+++.+++|+|++||+||++|+
T Consensus       162 qV~~A~~ll-~~~~~~~~GVPlF~~~~Lti~~~n~~~iP~FF~Kedlq~~L~~~kkq~p~l~~~~~I~V~~Le~vi~~m~  240 (270)
T TIGR00995       162 QIKNALELP-AANSEYFDGVPVFQSGLLVVQKKNERYCPVYFSKEDIEQELSKFKRESPGMADSQVIMVGSMEDVLSKME  240 (270)
T ss_pred             HHHHHHHHH-hcCccCCCCccEEeecceEEEeCCeEEEeeEeeHHHHHHHHHHHhHhCcCcCCCccEEEEeHHHHHHHHh
Confidence            999999999 4467888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCceeEEEeCCcccHHHHHHHHhcC
Q 024182          242 TSEKNSGWEDLIFIPPGKSHSQHIQEVAKV  271 (271)
Q Consensus       242 ~~~~~~~~~~~vfIPp~~s~~~~i~~~~~~  271 (271)
                      +++++++|.+.+|+||+.+..+|||+++|.
T Consensus       241 ~~~~~~~~~~~I~l~Ps~e~~~~iq~~~~~  270 (270)
T TIGR00995       241 TSEKDSGWEDQIFIPPGQEAIQHMQSLIAQ  270 (270)
T ss_pred             ccCCCCcccceEEECCCHHHHHHHHHHhcC
Confidence            876788999999999998888999999873

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.

>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane

Probab=100.00  E-value=4.5e-62  Score=448.44  Aligned_cols=255  Identities=45%  Similarity=0.674  Sum_probs=157.1

Q ss_pred             cchhhhhHHHHHhhhhhccccccchhhhhhhhc-cCCCCCCCCCeeeecCcch---hhhccCChHHHHhhcCCccEEEEE
Q 024182           13 LLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRR-LQRPPLSVPPFAFLSQPKQ---ALAATLSSDFVSKTLAGTAVYTVS   88 (271)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~v~~~~~---~~a~aL~~~~i~ekL~~VPVF~Vt   88 (271)
                      ++++++|+|+| .|+++++.+++.++.+.-+.. +...+...+.||..+....   .+++||++++|++||++||||+||
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~a~AL~~~~V~~kL~~VPVF~it   81 (274)
T PF04278_consen    3 LLSFSNFISNP-LRLGAELASRMKSLIRWSATLGLQGSLGLLPSTALGSSLGSSQPSSALALPEEEVEEKLAGVPVFTIT   81 (274)
T ss_dssp             ---------------------------------------------------------------HHHHHHHHTTSEEEEEE
T ss_pred             ccccccccccc-ccccccccccccccchhhhccccccccccCCchhcccccccccccccccCCHHHHHHHhcCceEEEEE
Confidence            67899999999 999999999998887744422 2333445566666666433   359999999999999999999999


Q ss_pred             cCCCCeEEEeCCCC-CeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHHhh------hcCCeeEEEecCHH
Q 024182           89 NSSNEFVLISDPNG-AKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML------KVEGIAFRFLPDPA  161 (271)
Q Consensus        89 n~~g~pvli~~~~g-~~~v~~~F~s~~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~l------k~~~i~f~fvP~~~  161 (271)
                      |++|+||+++++++ ++++++||||++||++||+++++++|++++++||++|+||+||++      +.+++.|+|+|+++
T Consensus        82 n~~G~p~l~~~~~~~~~~v~~~F~s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~~vY~l~~~~~~k~~~~~F~~vP~~~  161 (274)
T PF04278_consen   82 NSQGEPVLVSGPDQGGKSVGLFFFSQQDAEAFLAQLKKSNPELASGAKVVPVSLGKVYQLAQENKKKPEGLQFRFVPDPK  161 (274)
T ss_dssp             -TT--B-----TTS--SEEEEEES-HHHHHHHHHHHHH-SSHHHTT-EEEEEEHHHHHHHHHHTTT-TT-EEEEEE--HH
T ss_pred             CCCCCEEEeccCCCCCceEEEEEecHHHHHHHHHHHhhhCccccCceEEEEecHHHHHHHHHHhhcCCcCceEEEcCCHH
Confidence            99999999999874 789999999999999999999999999999999999999999999      56899999999999


Q ss_pred             HHHHHHHhhhhccC--CCCCCceEEeccc----eeEeeCCeEEeeeeecHHHHHHHHHHHHHhcCCCCCcceEEEEeHHH
Q 024182          162 QIRNALELKAADVR--TGFDGVPVFQSEL----LVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLED  235 (271)
Q Consensus       162 qv~~A~~L~~~~~~--~~f~GVPVF~~~~----Lti~~~~~~~~PvFFskeDl~~~l~~~kk~~p~~~~~~~I~V~~Le~  235 (271)
                      ||++|++|++.+|+  ++|+|||||+.++    |+++++|++++|+||+||||+++|+++++++|+++.+++|+|++|++
T Consensus       162 qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~~~Lti~~~~~~~iPlFF~kedL~~~l~k~~kq~p~~~~~~~I~V~~Le~  241 (274)
T PF04278_consen  162 QVEAALELLKKQGQKVKQFQGVPVFYAEGGKGYLTIKQDNKRIIPLFFDKEDLQAALEKAKKQQPDLAKEPKIQVVSLED  241 (274)
T ss_dssp             HHHHHHHHHHTTT---S---S-EEEEEESST-B-EETTTTEEEEEEESSHHHHHHHHHHHTTT-TT-----EEEEEEHHH
T ss_pred             HHHHHHHHHHhcCCCcccCCCeEEEEEcCCCceEEEeeCCeEEEEEEecHHHHHHHHHHHHHhCCCCcCCceEEEEcHHH
Confidence            99999999988876  5799999999877    99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCceeEEEeCCcccHHHHHHHHhc
Q 024182          236 VLKKMETSEKNSGWEDLIFIPPGKSHSQHIQEVAK  270 (271)
Q Consensus       236 vi~~m~~~~~~~~~~~~vfIPp~~s~~~~i~~~~~  270 (271)
                      ||+.|++++ +++|.+++||||++++ +|||+++|
T Consensus       242 vI~~m~~~~-d~~~~~i~fiP~~es~-~~i~~~~~  274 (274)
T PF04278_consen  242 VIKTMEESD-DSDLKKIVFIPPGESL-EFIQSLKQ  274 (274)
T ss_dssp             HHHHHHH----GGGGGEEEE--HHHH-HHHHTS--
T ss_pred             HHHHHhcCC-CCCcceEEEECCHHHH-HHHHHhcC
Confidence            999999976 7899999999999999 99998865

This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.

>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane

Probab=99.40  E-value=8.8e-13  Score=121.89  Aligned_cols=116  Identities=23%  Similarity=0.350  Sum_probs=80.9

Q ss_pred             CCCCeeeecCcch-hhhccCChH--HHHhhcCCccEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcc
Q 024182           52 SVPPFAFLSQPKQ-ALAATLSSD--FVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRK  128 (271)
Q Consensus        52 ~~~~~a~v~~~~~-~~a~aL~~~--~i~ekL~~VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~s~~DA~a~L~~lk~~~P  128 (271)
                      .+..|+++|.+++ ..|+.|..+  +-.+.+.|||||.+.+++ .++.+.  ++++.++++||+++|+++.++++++++|
T Consensus       150 ~~~~F~~vP~~~qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~-~~Lti~--~~~~~~iPlFF~kedL~~~l~k~~kq~p  226 (274)
T PF04278_consen  150 EGLQFRFVPDPKQVEAALELLKKQGQKVKQFQGVPVFYAEGGK-GYLTIK--QDNKRIIPLFFDKEDLQAALEKAKKQQP  226 (274)
T ss_dssp             T-EEEEEE--HHHHHHHHHHHHTTT---S---S-EEEEEESST--B-EET--TTTEEEEEEESSHHHHHHHHHHHTTT-T
T ss_pred             cCceEEEcCCHHHHHHHHHHHHhcCCCcccCCCeEEEEEcCCC-ceEEEe--eCCeEEEEEEecHHHHHHHHHHHHHhCC
Confidence            5789999999988 777888333  444889999999999999 777664  5678899999999999999999999999


Q ss_pred             cccCCceEEEEehhhHHhh--hcCC---eeEEEecCHHHHHHHHHhh
Q 024182          129 ELRSAAKVVPITLDQVYML--KVEG---IAFRFLPDPAQIRNALELK  170 (271)
Q Consensus       129 ~~~~~~kV~~vsL~~vy~l--k~~~---i~f~fvP~~~qv~~A~~L~  170 (271)
                      +++.+.+|.+++|+.+.+.  ..++   -.+.|||+.+.++.++++.
T Consensus       227 ~~~~~~~I~V~~Le~vI~~m~~~~d~~~~~i~fiP~~es~~~i~~~~  273 (274)
T PF04278_consen  227 DLAKEPKIQVVSLEDVIKTMEESDDSDLKKIVFIPPGESLEFIQSLK  273 (274)
T ss_dssp             T-----EEEEEEHHHHHHHHHH---GGGGGEEEE--HHHHHHHHTS-
T ss_pred             CCcCCceEEEEcHHHHHHHHhcCCCCCcceEEEECCHHHHHHHHHhc
Confidence            9999999999999999976  2222   5888999999999997764

This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.

>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family

Probab=99.29  E-value=1.3e-11  Score=113.50  Aligned_cols=111  Identities=18%  Similarity=0.258  Sum_probs=93.3

Q ss_pred             CCCeeeecCcch-hhhccCChHHHHhhcCCccEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhccccc
Q 024182           53 VPPFAFLSQPKQ-ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELR  131 (271)
Q Consensus        53 ~~~~a~v~~~~~-~~a~aL~~~~i~ekL~~VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~s~~DA~a~L~~lk~~~P~~~  131 (271)
                      .+.|+++|.+++ ..|+.|... -.+...|||||.+     +++++.  ++++.+++|||+++|+++.|+++|+++|+++
T Consensus       151 ~l~F~fiP~~~qV~~A~~ll~~-~~~~~~GVPlF~~-----~~Lti~--~~n~~~iP~FF~Kedlq~~L~~~kkq~p~l~  222 (270)
T TIGR00995       151 GIGFRFLPDPAQIKNALELPAA-NSEYFDGVPVFQS-----GLLVVQ--KKNERYCPVYFSKEDIEQELSKFKRESPGMA  222 (270)
T ss_pred             CccEEEeCCHHHHHHHHHHHhc-CccCCCCccEEee-----cceEEE--eCCeEEEeeEeeHHHHHHHHHHHhHhCcCcC
Confidence            499999999988 777777622 3455679999999     777774  4568899999999999999999999999999


Q ss_pred             CCceEEEEehhhHHhh-hc---C---CeeEEEecCHHHHHHHHHhhh
Q 024182          132 SAAKVVPITLDQVYML-KV---E---GIAFRFLPDPAQIRNALELKA  171 (271)
Q Consensus       132 ~~~kV~~vsL~~vy~l-k~---~---~i~f~fvP~~~qv~~A~~L~~  171 (271)
                      .+.+|.+++|+.+.+. +.   +   .-...|+|+++.+++++++.+
T Consensus       223 ~~~~I~V~~Le~vi~~m~~~~~~~~~~~~I~l~Ps~e~~~~iq~~~~  269 (270)
T TIGR00995       223 DSQVIMVGSMEDVLSKMETSEKDSGWEDQIFIPPGQEAIQHMQSLIA  269 (270)
T ss_pred             CCccEEEEeHHHHHHHHhccCCCCcccceEEECCCHHHHHHHHHHhc
Confidence            9999999999999976 22   2   257789999999999998753

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.

>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function

Probab=93.40  E-value=0.78  Score=35.63  Aligned_cols=72  Identities=15%  Similarity=0.312  Sum_probs=54.9

Q ss_pred             EEEEE----cCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHHhh-hcCCeeEEEec
Q 024182           84 VYTVS----NSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML-KVEGIAFRFLP  158 (271)
Q Consensus        84 VF~Vt----n~~g~pvli~~~~g~~~v~~~F~s~~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~l-k~~~i~f~fvP  158 (271)
                      ||+++    +.+++.+.++..  ++.+.++|=+.+||+.|...|..+.-   ....|..+..+.+..+ ++.|..+++||
T Consensus         1 v~VL~f~~~~~~eGI~si~~~--~~~~Vl~FE~edDA~RYa~lLEAqd~---~~p~Ve~id~~~i~~fC~~~gy~~~iv~   75 (86)
T PF11360_consen    1 VYVLLFNAGTETEGIYSIQNK--DRNVVLMFEDEDDAERYAGLLEAQDF---PDPTVEEIDPEEIEEFCRSAGYEYEIVP   75 (86)
T ss_pred             CEEEEecCCCCCCcEEEEEeC--CCCEEEEEccHHHHHHHHHHHHhcCC---CCCCeEEECHHHHHHHHHHCCceEEEEC
Confidence            45666    345577777643  36688899999999999999987542   2347999999999998 67788899988


Q ss_pred             CH
Q 024182          159 DP  160 (271)
Q Consensus       159 ~~  160 (271)
                      .-
T Consensus        76 ~g   77 (86)
T PF11360_consen   76 PG   77 (86)
T ss_pred             CC
Confidence            64

>PF07179 SseB: SseB protein N-terminal domain; InterPro: IPR009839 This family consists of several SseB proteins, which appear to be found exclusively in Enterobacteria

Probab=81.98  E-value=6  Score=30.92  Aligned_cols=58  Identities=26%  Similarity=0.440  Sum_probs=43.0

Q ss_pred             eeEe-eCCeEEeeeeecHHHHHHHHHHHHHhcCCCCCcceEEEEeHHHHHHHHhhcCCCCCceeEEEeCCccc
Q 024182          189 LVVK-KKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMETSEKNSGWEDLIFIPPGKS  260 (271)
Q Consensus       189 Lti~-~~~~~~~PvFFskeDl~~~l~~~kk~~p~~~~~~~I~V~~Le~vi~~m~~~~~~~~~~~~vfIPp~~s  260 (271)
                      +++. .+|++++|+|.+.+.+.+...    .      ...+.++++.++++.+.. .  + ..-+++=|-+..
T Consensus        54 ~~~~~~dg~~~lpvFTs~e~l~~~~~----~------~~~~~~~~~~~l~~~~~~-~--~-~~giviNP~~~~  112 (124)
T PF07179_consen   54 LTLEDPDGERYLPVFTSWEELEKWYP----D------ERPIIVVPFEDLLEMLLN-N--E-GDGIVINPGTPS  112 (124)
T ss_pred             EEEEcCCCCEEEEEECCHHHHHhhhc----c------cCceecccHHHHHHHhhc-C--C-CcEEEEECCCCc
Confidence            4444 688999999999999998865    1      355789999999999972 1  1 246666666654

SseB is known to enhance serine-sensitivity in Escherichia coli [] and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
4ev1_A	252	Anabena TIC22; TIC22 fold, chaperon, protein trans	4e-48

>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP} Length = 252

 Score =  159 bits (402), Expect = 4e-48
 Identities = 44/229 (19%), Positives = 94/229 (41%), Gaps = 34/229 (14%)

Query: 70  LSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAK------SIGLLCFRQEDAEAFLAQV 123
           LS   + + L    +Y V+N     +    PN         SI      +++A+AF+ ++
Sbjct: 2   LSEQQIKEKLDSVPIYLVTNEKGLPLSRPLPNAPNGQKAGGSITGAYMSRQEAQAFINEL 61

Query: 124 RL------RRKELRSAAKVVPITLDQVYML------KVEGIAFRFLPDPAQIRNALEL-- 169
           R       + +E+  + +V  + L  +Y            + F F P   +I+ A++L  
Sbjct: 62  RNAKNKDPKMQEIVKSLQVTAVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDLLR 121

Query: 170 KAADVRTGFDGVPVFQSE--------LLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRG 221
           ++      F  VP+F            + V   N++  P++  K+D +  L +V      
Sbjct: 122 QSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPLFLSKQDAQGLLGQVKPKHPK 181

Query: 222 AGVSQHIMVGSLEDVLKKMETSEKNSGWEDLIFIPPGKSHSQHIQEVAK 270
           A     I V  ++ VL+ ++    ++    ++ +P  +S  ++I+ + K
Sbjct: 182 A----DIQVLDIDGVLQTLQDKN-DTWLNQVVLVPSPES-REYIRTLPK 224

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
4ev1_A	252	Anabena TIC22; TIC22 fold, chaperon, protein trans	100.0
4e6z_A	279	Apicoplast TIC22, putative; TIC complex, import pr	100.0
4ev1_A	252	Anabena TIC22; TIC22 fold, chaperon, protein trans	99.36
4e6z_A	279	Apicoplast TIC22, putative; TIC complex, import pr	98.96
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	80.88
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	80.48

>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}

Probab=100.00  E-value=7.7e-55  Score=393.99  Aligned_cols=195  Identities=22%  Similarity=0.402  Sum_probs=182.7

Q ss_pred             CChHHHHhhcCCccEEEEEcCCCCeEEEeCCCC------CeeEEEEEecHHHHHHHHHHHHH---hcc---cccCCceEE
Q 024182           70 LSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNG------AKSIGLLCFRQEDAEAFLAQVRL---RRK---ELRSAAKVV  137 (271)
Q Consensus        70 L~~~~i~ekL~~VPVF~Vtn~~g~pvli~~~~g------~~~v~~~F~s~~DA~a~L~~lk~---~~P---~~~~~~kV~  137 (271)
                      ||++||+++|++||||+|||++|+||+++++++      +++|++||||++||++||+++|+   +||   ++++++||+
T Consensus         2 L~e~eV~ekL~~VPVF~Itn~~G~Pll~~~~~~~~~~~~~~~V~~~F~s~~dA~~~L~~lk~~~~~np~~~~~~~~~kV~   81 (252)
T 4ev1_A            2 LSEQQIKEKLDSVPIYLVTNEKGLPLSRPLPNAPNGQKAGGSITGAYMSRQEAQAFINELRNAKNKDPKMQEIVKSLQVT   81 (252)
T ss_dssp             CCHHHHHHHHTTSEEEEEECTTCCBCEEECCCCTTSCCSCSEEEEEESCHHHHHHHHHHHHHCSSCCHHHHHHHTTCEEE
T ss_pred             CCHHHHHHHhcCCcEEEEECCCCCeEEEecCCccccccCCCeEEEEEecHHHHHHHHHHHHhccccCchhhhhccCceEE
Confidence            899999999999999999999999999998872      57899999999999999999999   999   999999999


Q ss_pred             EEehhhHHhh------hcCCeeEEEecCHHHHHHHHHhhhhccC--CCCCCceEEecc------ceeEeeC--CeEEeee
Q 024182          138 PITLDQVYML------KVEGIAFRFLPDPAQIRNALELKAADVR--TGFDGVPVFQSE------LLVVKKK--NKRYCPV  201 (271)
Q Consensus       138 ~vsL~~vy~l------k~~~i~f~fvP~~~qv~~A~~L~~~~~~--~~f~GVPVF~~~------~Lti~~~--~~~~~Pv  201 (271)
                      +|+||+||++      +.+++.|+|||+++||++|+.|++.+|+  +.|+|||||+..      +||++++  |++|+|+
T Consensus        82 ~vsL~~vyql~~~~~~k~~~l~F~fvP~~~qV~~A~~Ll~~~Gq~~~~f~gVPvF~~~~~~~~~~Lti~~~~~~~~~iPl  161 (252)
T 4ev1_A           82 AVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDLLRQSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPL  161 (252)
T ss_dssp             EEEHHHHHHHHHHTTTCTTCEEEEEECCHHHHHHHHHHHHTTTCCCSCCCSCEEEEEESSTTSCBCCEEETTTTEEEEEE
T ss_pred             EeeHHHHHHHHHhhccCCcCceEEEcCCHHHHHHHHHHHHHcCCCcccCCCccEEEEecCCCCccEEEEeCCCCCEEEee
Confidence            9999999999      4578999999999999999999998876  568899999965      7999998  9999999


Q ss_pred             eecHHHHHHHHHHHHHhcCCCCCcceEEEEeHHHHHHHHhhcCCCCCceeEEEeCCcccHHHHHHHHhc
Q 024182          202 YFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMETSEKNSGWEDLIFIPPGKSHSQHIQEVAK  270 (271)
Q Consensus       202 FFskeDl~~~l~~~kk~~p~~~~~~~I~V~~Le~vi~~m~~~~~~~~~~~~vfIPp~~s~~~~i~~~~~  270 (271)
                      ||+||||+++|+++++++|+    ++|+|++|++||++|++++ ++.|.+++||||++++ +|||++++
T Consensus       162 FF~KedL~~~l~~~kkq~P~----~~I~V~~Le~vI~~m~~~~-d~~~~~ivfiPs~es~-e~i~~~~~  224 (252)
T 4ev1_A          162 FLSKQDAQGLLGQVKPKHPK----ADIQVLDIDGVLQTLQDKN-DTWLNQVVLVPSPESR-EYIRTLPK  224 (252)
T ss_dssp             ESSHHHHHHHHHHHTTTCTT----CEEEEEEHHHHHHHHHHCC-CGGGGGEEEECCHHHH-HHHHTSCC
T ss_pred             EecHHHHHHHHHHHHHhCCC----CcEEEeeHHHHHHHHhcCc-ccccceEEEECCHHHH-HHHHhccc
Confidence            99999999999999999988    9999999999999999854 6689999999999999 99999864

>4e6z_A Apicoplast TIC22, putative; TIC complex, import protein, transport protein; 2.15A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=1.5e-48  Score=358.06  Aligned_cols=190  Identities=19%  Similarity=0.302  Sum_probs=168.4

Q ss_pred             ccCChHHHHhhcCCccEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHH-hcccccCCceEEEEehhhHHh
Q 024182           68 ATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRL-RRKELRSAAKVVPITLDQVYM  146 (271)
Q Consensus        68 ~aL~~~~i~ekL~~VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~s~~DA~a~L~~lk~-~~P~~~~~~kV~~vsL~~vy~  146 (271)
                      .++++++|+|||++||||+|||++|+|++++++  +++|++||||++||+++|+++++ ++|++++++||++++||+||+
T Consensus        63 ~~~~e~~I~EKL~~VPVF~Itn~~G~Pll~~~~--~~~V~~fF~s~~DA~a~L~el~k~~~~~~~~~~kV~pvsL~kvy~  140 (279)
T 4e6z_A           63 KRYDERPIEEKLEVIPVFLITNYNSSPYIFQEN--EKQVCYMFLCPYDAENMLNDMIKYNGMKYNGNIKIHNITMKKAYE  140 (279)
T ss_dssp             -----CCHHHHSTTSEEEEEECTTCCBCCEEET--TEEEEEEESSHHHHHHHHHHHHHHCHHHHTTSCEEEEEEHHHHHH
T ss_pred             hcccHHhHHHHhcCCCEEEEEcCCCCEEEecCC--CCeEEEEECCHHHHHHHHHHHHhccCcccccCceEEEecHHHHHH
Confidence            489999999999999999999999999999764  46899999999999999999755 558999999999999999999


Q ss_pred             h------------------hcCCeeEEEecCHHHHHHHHHhhhhccCCCCCCceEEeccceeEeeCCeEEeeeeecHHHH
Q 024182          147 L------------------KVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDI  208 (271)
Q Consensus       147 l------------------k~~~i~f~fvP~~~qv~~A~~L~~~~~~~~f~GVPVF~~~~Lti~~~~~~~~PvFFskeDl  208 (271)
                      +                  +.+++.|+|+|+++||++|+.+++.+|++ ++|||||+.++|++++++++++|+||+||||
T Consensus       141 l~~~~~~~~~~~i~~~~~~k~~~l~fr~vP~~~qV~~A~~ll~~~gq~-~~gVPVF~~~~Lti~k~~k~iiPlFF~keDL  219 (279)
T 4e6z_A          141 LMKEFLQLEKMEVNKEDSKKKQNIYWKLISSKRQLQNALYYLSFTKKS-ELMYPVFYAENLYIQKDGSNIIPLFFDLEDL  219 (279)
T ss_dssp             HHHHHHHHHHC----------CCEEEEEECCHHHHHHHHTTSCTTTST-TCCSEEEEETTCCEECSSSEEEEEESSHHHH
T ss_pred             HHhhcccccchhcccccccCCcceeeEecCCHHHHHHHHHHHHhcCCc-CCCccEEEEeeEEEeeCCeEEEeeEecHHHH
Confidence            7                  23679999999999999999999887765 8899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcceEEEEeHHHHHHHHhhcCCCCCceeEEEeCCcccHHHHHHHHh
Q 024182          209 EKELSKVSRASRGAGVSQHIMVGSLEDVLKKMETSEKNSGWEDLIFIPPGKSHSQHIQEVA  269 (271)
Q Consensus       209 ~~~l~~~kk~~p~~~~~~~I~V~~Le~vi~~m~~~~~~~~~~~~vfIPp~~s~~~~i~~~~  269 (271)
                      +++|+++++++|+ ..+++|+|++|+++|..|       +|.+++||||++++ +||++++
T Consensus       220 ~~~l~q~~~~~p~-~~~~~I~V~~L~~ll~~~-------d~~kivFIPs~eSl-efi~~l~  271 (279)
T 4e6z_A          220 KEAIEEQKNKALS-KVDYKIKVLNMVDLIFTE-------DHKKFGFVPSTQSV-KYLDKLN  271 (279)
T ss_dssp             HHHHHHHHTTCSS-CCCCCEEEEEHHHHHTCS-------CCTTEEEECCHHHH-HHHHHHH
T ss_pred             HHHHHHhhhcCCC-CCCCceEEEhHHHHHhhC-------CcCeEEEECCHHHH-HHHHHHh
Confidence            9999999999987 457999999999999654       35689999999999 9999985

>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}

Probab=99.36  E-value=7.8e-13  Score=119.48  Aligned_cols=117  Identities=18%  Similarity=0.256  Sum_probs=96.1

Q ss_pred             CCCCeeeecCcch-hhhccCChH--HHHhhcCCccEEEEEcCCC-CeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhc
Q 024182           52 SVPPFAFLSQPKQ-ALAATLSSD--FVSKTLAGTAVYTVSNSSN-EFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRR  127 (271)
Q Consensus        52 ~~~~~a~v~~~~~-~~a~aL~~~--~i~ekL~~VPVF~Vtn~~g-~pvli~~~~g~~~v~~~F~s~~DA~a~L~~lk~~~  127 (271)
                      .+..|+++|.+++ ..|+.|..+  +-++.+.|||||.+..+.+ +++++...++++.+.++||+++|++++|+++++++
T Consensus       100 ~~l~F~fvP~~~qV~~A~~Ll~~~Gq~~~~f~gVPvF~~~~~~~~~~Lti~~~~~~~~~iPlFF~KedL~~~l~~~kkq~  179 (252)
T 4ev1_A          100 NRLLFAFKPVDQEIKGAMDLLRQSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPLFLSKQDAQGLLGQVKPKH  179 (252)
T ss_dssp             TCEEEEEECCHHHHHHHHHHHHTTTCCCSCCCSCEEEEEESSTTSCBCCEEETTTTEEEEEEESSHHHHHHHHHHHTTTC
T ss_pred             cCceEEEcCCHHHHHHHHHHHHHcCCCcccCCCccEEEEecCCCCccEEEEeCCCCCEEEeeEecHHHHHHHHHHHHHhC
Confidence            4789999999987 777877665  3456788999999997554 67777533337889999999999999999999999


Q ss_pred             ccccCCceEEEEehhhHHhh-h-cCC---eeEEEecCHHHHHHHHHhhhh
Q 024182          128 KELRSAAKVVPITLDQVYML-K-VEG---IAFRFLPDPAQIRNALELKAA  172 (271)
Q Consensus       128 P~~~~~~kV~~vsL~~vy~l-k-~~~---i~f~fvP~~~qv~~A~~L~~~  172 (271)
                      |+    .+|.+++|+.+++. . .++   -.++|||+.+.+++++++...
T Consensus       180 P~----~~I~V~~Le~vI~~m~~~~d~~~~~ivfiPs~es~e~i~~~~~~  225 (252)
T 4ev1_A          180 PK----ADIQVLDIDGVLQTLQDKNDTWLNQVVLVPSPESREYIRTLPKP  225 (252)
T ss_dssp             TT----CEEEEEEHHHHHHHHHHCCCGGGGGEEEECCHHHHHHHHTSCCC
T ss_pred             CC----CcEEEeeHHHHHHHHhcCcccccceEEEECCHHHHHHHHhcccc
Confidence            97    99999999999986 2 222   478899999999999998654

>4e6z_A Apicoplast TIC22, putative; TIC complex, import protein, transport protein; 2.15A {Plasmodium falciparum 3D7}

Probab=98.96  E-value=1.5e-09  Score=99.39  Aligned_cols=110  Identities=16%  Similarity=0.165  Sum_probs=88.8

Q ss_pred             CCCCeeeecCcch-hhhccCChHHHHhhcCCccEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccc
Q 024182           52 SVPPFAFLSQPKQ-ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKEL  130 (271)
Q Consensus        52 ~~~~~a~v~~~~~-~~a~aL~~~~i~ekL~~VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~s~~DA~a~L~~lk~~~P~~  130 (271)
                      ....|.++|..++ ..|..+..+.- +.-.|||||.+..     +++.  .+++.++++||+++|+++.+++.++++|. 
T Consensus       162 ~~l~fr~vP~~~qV~~A~~ll~~~g-q~~~gVPVF~~~~-----Lti~--k~~k~iiPlFF~keDL~~~l~q~~~~~p~-  232 (279)
T 4e6z_A          162 QNIYWKLISSKRQLQNALYYLSFTK-KSELMYPVFYAEN-----LYIQ--KDGSNIIPLFFDLEDLKEAIEEQKNKALS-  232 (279)
T ss_dssp             CCEEEEEECCHHHHHHHHTTSCTTT-STTCCSEEEEETT-----CCEE--CSSSEEEEEESSHHHHHHHHHHHHTTCSS-
T ss_pred             cceeeEecCCHHHHHHHHHHHHhcC-CcCCCccEEEEee-----EEEe--eCCeEEEeeEecHHHHHHHHHHhhhcCCC-
Confidence            4678999999977 67777766643 3467999999853     5554  35677999999999999999999999987 


Q ss_pred             cCCceEEEEehhhHHhhhcCCeeEEEecCHHHHHHHHHhhh
Q 024182          131 RSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKA  171 (271)
Q Consensus       131 ~~~~kV~~vsL~~vy~lk~~~i~f~fvP~~~qv~~A~~L~~  171 (271)
                      ....+|.+++|..+..-.. .-.|.|||+.+.++.++++..
T Consensus       233 ~~~~~I~V~~L~~ll~~~d-~~kivFIPs~eSlefi~~l~~  272 (279)
T 4e6z_A          233 KVDYKIKVLNMVDLIFTED-HKKFGFVPSTQSVKYLDKLNI  272 (279)
T ss_dssp             CCCCCEEEEEHHHHHTCSC-CTTEEEECCHHHHHHHHHHHH
T ss_pred             CCCCceEEEhHHHHHhhCC-cCeEEEECCHHHHHHHHHHhc
Confidence            5568899999998886433 336889999999999999854

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=80.88  E-value=11  Score=29.00  Aligned_cols=130  Identities=14%  Similarity=0.137  Sum_probs=72.0

Q ss_pred             CCccEEEEEcCCCCeEEEeCCCCCeeEEEEEecH-----HHHHHHHHHHHHhcccccCCceEEEEehhhHHh----h-hc
Q 024182           80 AGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQ-----EDAEAFLAQVRLRRKELRSAAKVVPITLDQVYM----L-KV  149 (271)
Q Consensus        80 ~~VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~s~-----~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~----l-k~  149 (271)
                      ...|-|.++|.+|..+-...-.| +.+...|+..     ......+.++....++  .++.|..|+.+.--+    . +.
T Consensus        12 ~~~p~~~l~~~~g~~~~l~~~~g-k~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~--~~v~~v~v~~d~~~~~~~~~~~~   88 (165)
T 3or5_A           12 TPAPSFSGVTVDGKPFSSASLKG-KAYIVNFFATWCPPCRSEIPDMVQVQKTWAS--RGFTFVGIAVNEQLPNVKNYMKT   88 (165)
T ss_dssp             CBCCCCEEECTTSCEEEGGGGTT-CEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TTEEEEEEECSCCHHHHHHHHHH
T ss_pred             CCCCCceeeCCCCCEechhHcCC-CEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc--CCeEEEEEECCCCHHHHHHHHHH
Confidence            35788999999999888766555 4455455531     1222334444444332  358888888774221    1 33


Q ss_pred             CCeeEEEecCHHHHHHHHHhhhhccCCCCCCceEEeccceeEeeCCeEEe--eeeecHHHHHHHHHHHHHhc
Q 024182          150 EGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYC--PVYFQKEDIEKELSKVSRAS  219 (271)
Q Consensus       150 ~~i~f~fvP~~~qv~~A~~L~~~~~~~~f~GVPVF~~~~Lti~~~~~~~~--PvFFskeDl~~~l~~~kk~~  219 (271)
                      .++.|.++-+..++..+.....   .....|+|-++    .+.++|+.+-  .=+.+.+++.+.++++.++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~P~~~----lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~  153 (165)
T 3or5_A           89 QGIIYPVMMATPELIRAFNGYI---DGGITGIPTSF----VIDASGNVSGVIVGPRSKADFDRIVKMALGAK  153 (165)
T ss_dssp             HTCCSCEEECCHHHHHHHHTTS---TTCSCSSSEEE----EECTTSBEEEEECSCCCHHHHHHHHHHHHC--
T ss_pred             cCCCCceEecCHHHHHHHhhhh---ccCCCCCCeEE----EECCCCcEEEEEcCCCCHHHHHHHHHHHHhhh
Confidence            4566666666654433332211   11356788654    2233333221  11357899999998887644

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=80.48  E-value=13  Score=28.33  Aligned_cols=126  Identities=11%  Similarity=0.078  Sum_probs=72.2

Q ss_pred             CccEEEEEcCCCCeEEEeCCCCCeeEEEEEecH-----HHHHHHHHHHHHhcccccCCceEEEEehhhHHh-h----hcC
Q 024182           81 GTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQ-----EDAEAFLAQVRLRRKELRSAAKVVPITLDQVYM-L----KVE  150 (271)
Q Consensus        81 ~VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~s~-----~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~-l----k~~  150 (271)
                      .+|-|.++|.+|..+..+.-.| +.+.+.|...     ......|.++.+..++  .+++|..|+.+.--+ +    +..
T Consensus         8 ~~p~f~l~~~~G~~~~l~~~~g-k~vll~F~a~~C~~C~~~~~~l~~l~~~~~~--~~~~vv~v~~d~~~~~~~~~~~~~   84 (152)
T 2lrn_A            8 VAPAITGIDLKGNSVSLNDFKG-KYVLVDFWFAGCSWCRKETPYLLKTYNAFKD--KGFTIYGVSTDRREEDWKKAIEED   84 (152)
T ss_dssp             ECCCCEEECSSSCEEESGGGTT-SEEEEEEECTTCTTHHHHHHHHHHHHHHHTT--TTEEEEEEECCSCHHHHHHHHHHH
T ss_pred             cCCCceeEcCCCCEEeHHHcCC-CEEEEEEECCCChhHHHHHHHHHHHHHHhcc--CCeEEEEEEccCCHHHHHHHHHHh
Confidence            3688999999999888866555 4455455421     1222334444443332  358899998874211 1    234


Q ss_pred             CeeEEEecCHHHHHHHHHhhhhccCCCCCCceEEeccceeEeeCCeEEeeeeecHHHHHHHHHHHHHhc
Q 024182          151 GIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRAS  219 (271)
Q Consensus       151 ~i~f~fvP~~~qv~~A~~L~~~~~~~~f~GVPVF~~~~Lti~~~~~~~~PvFFskeDl~~~l~~~kk~~  219 (271)
                      ++.|.++.+.....  ..+.+.-   +..|+|-++    .+.++|+ ++-.+.+.+++++.++++.++.
T Consensus        85 ~~~~~~~~d~~~~~--~~~~~~~---~v~~~P~~~----lid~~G~-i~~~~~~~~~l~~~l~~l~~~~  143 (152)
T 2lrn_A           85 KSYWNQVLLQKDDV--KDVLESY---CIVGFPHII----LVDPEGK-IVAKELRGDDLYNTVEKFVNGA  143 (152)
T ss_dssp             TCCSEEEEECHHHH--HHHHHHT---TCCSSCEEE----EECTTSE-EEEECCCTTHHHHHHHHHHTSS
T ss_pred             CCCCeEEecccchh--HHHHHHh---CCCcCCeEE----EECCCCe-EEEeeCCHHHHHHHHHHHHhhc
Confidence            56677777653221  1122111   134788642    3344444 4445678899999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00