Citrus Sinensis ID: 024185
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 271 | 2.2.26 [Sep-21-2011] | |||||||
| Q6NV31 | 313 | WD repeat-containing prot | yes | no | 0.608 | 0.527 | 0.410 | 8e-31 | |
| Q6GL39 | 313 | WD repeat-containing prot | yes | no | 0.608 | 0.527 | 0.404 | 8e-31 | |
| Q58E77 | 313 | WD repeat-containing prot | N/A | no | 0.608 | 0.527 | 0.404 | 1e-30 | |
| Q5ZMV7 | 313 | WD repeat-containing prot | yes | no | 0.608 | 0.527 | 0.404 | 2e-30 | |
| Q8BFQ4 | 313 | WD repeat-containing prot | yes | no | 0.608 | 0.527 | 0.404 | 3e-30 | |
| Q6UXN9 | 313 | WD repeat-containing prot | yes | no | 0.608 | 0.527 | 0.404 | 3e-30 | |
| Q640J6 | 313 | WD repeat-containing prot | N/A | no | 0.608 | 0.527 | 0.392 | 6e-30 | |
| Q9UT39 | 341 | Uncharacterized WD repeat | yes | no | 0.564 | 0.448 | 0.335 | 2e-14 | |
| O60137 | 357 | Set1 complex component sw | no | no | 0.309 | 0.235 | 0.395 | 6e-09 | |
| P36104 | 329 | COMPASS component SWD2 OS | yes | no | 0.560 | 0.462 | 0.272 | 2e-08 |
| >sp|Q6NV31|WDR82_DANRE WD repeat-containing protein 82 OS=Danio rerio GN=wdr82 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 134 bits (336), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Query: 85 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIK 143
QG++ L+G+P +FD +GL+FA + + +KL+D RS+DKGPF TF + + T E +K
Sbjct: 142 QGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKLQYERTCEWTGLK 201
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDGQYVVSGSGDG 202
FSNDGK +L++T + VLDA+ G F S EA+FTPD Q+++ GS DG
Sbjct: 202 FSNDGKLILVSTNGGTLRVLDAFKGAVLHSFGGYNNSKGVILEASFTPDSQFIMIGSEDG 261
Query: 203 TLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 249
+H WN + +VA +G + G V CL++ P+ F +A S ++FW+P
Sbjct: 262 KIHVWNAESGMKVALLDGKHTGPVTCLQFNPKFMTFASACSNMAFWLP 309
|
Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus. Danio rerio (taxid: 7955) |
| >sp|Q6GL39|WDR82_XENTR WD repeat-containing protein 82 OS=Xenopus tropicalis GN=wdr82 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (336), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Query: 85 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIK 143
QG++ L+G+P +FD +GL+FA + + +KL+D RS+DKGPF TF + D T E +K
Sbjct: 142 QGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTALK 201
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDGQYVVSGSGDG 202
FSNDGK +L++T + ++DA+ G F S EATFTPD Q+++ GS DG
Sbjct: 202 FSNDGKLILMSTNGGFLRLVDAFKGAVMHTFGGYNNSKAVTLEATFTPDSQFIMIGSEDG 261
Query: 203 TLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 249
+H WN + +VA +G + G + CL++ P+ F +A S ++FW+P
Sbjct: 262 KIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFTSACSNMAFWLP 309
|
Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus. Xenopus tropicalis (taxid: 8364) |
| >sp|Q58E77|WD82B_XENLA WD repeat-containing protein 82-B OS=Xenopus laevis GN=wdr82-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Query: 85 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIK 143
QG++ L+G+P +FD +GL+FA + + +KL+D RS+DKGPF TF + D T E +K
Sbjct: 142 QGLMHLQGKPVCSFDPEGLIFAAGINSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTALK 201
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDGQYVVSGSGDG 202
FSNDGK +LL+T + ++DA+ G F S EA+FTPD Q+++ GS DG
Sbjct: 202 FSNDGKLILLSTNGGFLRLVDAFKGAVMHTFGGYNNSKAVTLEASFTPDSQFIMIGSEDG 261
Query: 203 TLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 249
+H WN + +VA +G + G + CL++ P+ F +A S ++FW+P
Sbjct: 262 KIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309
|
Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus. Xenopus laevis (taxid: 8355) |
| >sp|Q5ZMV7|WDR82_CHICK WD repeat-containing protein 82 OS=Gallus gallus GN=WDR82 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Query: 85 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIK 143
QG++ L+G+P +FD +GL+FA + + +KL+D RS+DKGPF TF + D T E +K
Sbjct: 142 QGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLK 201
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDGQYVVSGSGDG 202
FSNDGK +L++T I ++DA+ G F S EA+FTPD Q+++ GS DG
Sbjct: 202 FSNDGKLILISTNGGFIRLIDAFKGAVLHTFGGYNNSKAVTLEASFTPDSQFIMIGSEDG 261
Query: 203 TLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 249
+H WN + +VA +G + G + CL++ P+ F +A S ++FW+P
Sbjct: 262 KIHVWNGESGMKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309
|
Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus. Gallus gallus (taxid: 9031) |
| >sp|Q8BFQ4|WDR82_MOUSE WD repeat-containing protein 82 OS=Mus musculus GN=Wdr82 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Query: 85 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIK 143
QG++ L+G+P +FD +GL+FA + + +KL+D RS+DKGPF TF + D T E +K
Sbjct: 142 QGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLK 201
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDGQYVVSGSGDG 202
FSNDGK +L++T + I ++DA+ G F S EA+FTPD Q+++ GS DG
Sbjct: 202 FSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDG 261
Query: 203 TLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 249
+H WN + +VA +G + G + CL++ P+ F +A S ++FW+P
Sbjct: 262 KIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309
|
Regulatory component of the SET1 complex implicated in the tethering of this complex to transcriptional start sites of active genes. Facilitates histone H3 'Lys-4' methylation via recruitment of the SETD1A or SETD1B to the 'Ser-5' phosphorylated C-terminal domain (CTD) of RNA polymerase II large subunit (POLR2A). Component of PTW/PP1 phosphatase complex, which plays a role in the control of chromatin structure and cell cycle progression during the transition from mitosis into interphase. Possible role in telomere length maintenance and in mRNA processing. Mus musculus (taxid: 10090) |
| >sp|Q6UXN9|WDR82_HUMAN WD repeat-containing protein 82 OS=Homo sapiens GN=WDR82 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Query: 85 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIK 143
QG++ L+G+P +FD +GL+FA + + +KL+D RS+DKGPF TF + D T E +K
Sbjct: 142 QGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLK 201
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDGQYVVSGSGDG 202
FSNDGK +L++T + I ++DA+ G F S EA+FTPD Q+++ GS DG
Sbjct: 202 FSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDG 261
Query: 203 TLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 249
+H WN + +VA +G + G + CL++ P+ F +A S ++FW+P
Sbjct: 262 KIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309
|
Regulatory component of the SET1 complex implicated in the tethering of this complex to transcriptional start sites of active genes. Facilitates histone H3 'Lys-4' methylation via recruitment of the SETD1A or SETD1B to the 'Ser-5' phosphorylated C-terminal domain (CTD) of RNA polymerase II large subunit (POLR2A). Component of PTW/PP1 phosphatase complex, which plays a role in the control of chromatin structure and cell cycle progression during the transition from mitosis into interphase. Homo sapiens (taxid: 9606) |
| >sp|Q640J6|WD82A_XENLA WD repeat-containing protein 82-A OS=Xenopus laevis GN=wdr82-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (329), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 104/168 (61%), Gaps = 3/168 (1%)
Query: 85 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIK 143
QG++ L+G+P +FD +GL+FA + + +KL+D RS+DKGPF TF + D T E +K
Sbjct: 142 QGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTSLK 201
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDGQYVVSGSGDG 202
FS DGK +L++T + ++DA+ G F S EA+FTPD Q+++ GS DG
Sbjct: 202 FSQDGKLILMSTNGGFLRLVDAFKGAVMHTFGGYNNSKAVTLEASFTPDSQFIMIGSEDG 261
Query: 203 TLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 249
+H WN + +VA +G + G + CL++ P+ F +A S ++FW+P
Sbjct: 262 KIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309
|
Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus. Xenopus laevis (taxid: 8355) |
| >sp|Q9UT39|YIQ4_SCHPO Uncharacterized WD repeat-containing protein C824.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC824.04 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 84/179 (46%), Gaps = 26/179 (14%)
Query: 97 AFDQQGLVFAVAMEA-GAIKLFDSRSYDKGPFDTFLVGGDT-----------AEVCDIKF 144
A+D GLVFAVA + I L+D R+Y PF TF + E ++F
Sbjct: 156 AYDPTGLVFAVACHSLSRIFLYDVRNYGSDPFSTFTIDDSRYLSRFSFPPMMPEWKHMEF 215
Query: 145 SNDGKSMLLTTTNNNIYVLDAYGGE---KRCGFSLEPSPNT--NTEATFTPDGQYVVSGS 199
SNDGK +LL+T N Y+LDA+ G+ + F P N TF P G +V+ +
Sbjct: 216 SNDGKCILLSTRANVHYILDAFSGDVLSRLEDFQELPFSNNFHGGSTTFVPQGNFVIGSA 275
Query: 200 GDGTLHAWNI--------NTR-NEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIP 249
D TL+ WN+ TR E + +I +K+ PR + A S L FW+P
Sbjct: 276 DDRTLNVWNLRHTFHHKGKTRPPEHRIVSQSIINPGLVKYNPRYDQLLTAGSQLVFWLP 334
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|O60137|SWD2_SCHPO Set1 complex component swd2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swd2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 7/91 (7%)
Query: 85 QGILRLRGRPTVAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFD----TFLVGGDTAEV 139
QG+L + AFD GL+FA V+ I L++ +S+D PF TFL +
Sbjct: 147 QGLLNVSSPVVAAFDATGLIFASVSERKYKISLYNIKSFDARPFQDIPLTFLPPH--VRI 204
Query: 140 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170
+++FS DGK +LLTT N+ YV+DAY G +
Sbjct: 205 ANVEFSTDGKYLLLTTGNDFHYVIDAYSGSE 235
|
The Set1 complex specifically methylates 'Lys-4' of histone H3. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P36104|SWD2_YEAST COMPASS component SWD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWD2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 85/169 (50%), Gaps = 17/169 (10%)
Query: 96 VAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLVGGDT-AEVCDIKFSNDGKSMLL 153
+A+D GLVFA+ E I L++ + +GPF + T ++ ++FSN+GK +L+
Sbjct: 159 IAYDPSGLVFALGNPENFEIGLYNLKKIQEGPFLIIKINDATFSQWNKLEFSNNGKYLLV 218
Query: 154 TTTNNNIYVLDAYGGEK------RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW 207
++ + DA+ G++ F + ++ + A FTPDG++V+ DG + W
Sbjct: 219 GSSIGKHLIFDAFTGQQLFELIGTRAFPMREFLDSGS-ACFTPDGEFVLGTDYDGRIAIW 277
Query: 208 NINT--RNEVACWNGNIGVVA------CLKWAPRRAMFVAASSVLSFWI 248
N + N+V G I V+ + + P+ +MFV A + F++
Sbjct: 278 NHSDSISNKVLRPQGFIPCVSHETCPRSIAFNPKYSMFVTADETVDFYV 326
|
Involved in mediating RNA polymerase II termination. Component of the cleavage and polyadenylation factor (CPF) complex, which plays a key role in polyadenylation-dependent pre-mRNA 3'-end formation and cooperates with cleavage factors including the CFIA complex and NAB4/CFIB. Component of the APT complex, which may be involved in polyadenylation-independent transcript 3'-end formation. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 271 | ||||||
| 225452366 | 339 | PREDICTED: WD repeat-containing protein | 0.811 | 0.648 | 0.719 | 2e-92 | |
| 296087619 | 338 | unnamed protein product [Vitis vinifera] | 0.811 | 0.650 | 0.719 | 2e-92 | |
| 224055555 | 329 | predicted protein [Populus trichocarpa] | 0.760 | 0.626 | 0.752 | 4e-90 | |
| 255560888 | 338 | COMPASS component SWD2, putative [Ricinu | 0.719 | 0.576 | 0.782 | 5e-90 | |
| 224141285 | 328 | predicted protein [Populus trichocarpa] | 0.815 | 0.673 | 0.673 | 2e-88 | |
| 449446692 | 337 | PREDICTED: WD repeat-containing protein | 0.734 | 0.590 | 0.763 | 4e-87 | |
| 449524044 | 242 | PREDICTED: WD repeat-containing protein | 0.734 | 0.822 | 0.768 | 2e-86 | |
| 359807248 | 334 | uncharacterized protein LOC100776353 [Gl | 0.749 | 0.607 | 0.709 | 2e-83 | |
| 224029213 | 318 | unknown [Zea mays] | 0.749 | 0.638 | 0.686 | 2e-83 | |
| 226501628 | 318 | set1 complex component swd2 [Zea mays] g | 0.749 | 0.638 | 0.686 | 3e-83 |
| >gi|225452366|ref|XP_002275160.1| PREDICTED: WD repeat-containing protein 82-B-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 164/228 (71%), Positives = 189/228 (82%), Gaps = 8/228 (3%)
Query: 52 FLSACLQLMIALCLVLLTTALEYG-------IFVLMLASFQGILRLRGRPTVAFDQQGLV 104
+ + +++LC+ + + G I+ L + S QGILRLRGRPTVA+DQQGLV
Sbjct: 110 YFKGHKERVVSLCMSPINDSFMSGSLDHSVRIWDLRVNSCQGILRLRGRPTVAYDQQGLV 169
Query: 105 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164
FAVAME GAIKLFDSRSYDKGPFDTF VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD
Sbjct: 170 FAVAMEGGAIKLFDSRSYDKGPFDTFFVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 229
Query: 165 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV 224
AYGGEKRCGFSLEPSP+T EATFTPDGQYVVSGSGDGTLHAW+I+ R+EVACWN NIGV
Sbjct: 230 AYGGEKRCGFSLEPSPSTTIEATFTPDGQYVVSGSGDGTLHAWSISMRHEVACWNSNIGV 289
Query: 225 VACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDE-STDPQATVKSDQV 271
+CLKWAPRRAMFVAAS+VL+FWIPN S ++ D +TDP+A +S+ +
Sbjct: 290 TSCLKWAPRRAMFVAASTVLTFWIPNASKSTADPGNTDPEAGPQSEHI 337
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087619|emb|CBI34875.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 164/228 (71%), Positives = 189/228 (82%), Gaps = 8/228 (3%)
Query: 52 FLSACLQLMIALCLVLLTTALEYG-------IFVLMLASFQGILRLRGRPTVAFDQQGLV 104
+ + +++LC+ + + G I+ L + S QGILRLRGRPTVA+DQQGLV
Sbjct: 109 YFKGHKERVVSLCMSPINDSFMSGSLDHSVRIWDLRVNSCQGILRLRGRPTVAYDQQGLV 168
Query: 105 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164
FAVAME GAIKLFDSRSYDKGPFDTF VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD
Sbjct: 169 FAVAMEGGAIKLFDSRSYDKGPFDTFFVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 228
Query: 165 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV 224
AYGGEKRCGFSLEPSP+T EATFTPDGQYVVSGSGDGTLHAW+I+ R+EVACWN NIGV
Sbjct: 229 AYGGEKRCGFSLEPSPSTTIEATFTPDGQYVVSGSGDGTLHAWSISMRHEVACWNSNIGV 288
Query: 225 VACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDE-STDPQATVKSDQV 271
+CLKWAPRRAMFVAAS+VL+FWIPN S ++ D +TDP+A +S+ +
Sbjct: 289 TSCLKWAPRRAMFVAASTVLTFWIPNASKSTADPGNTDPEAGPQSEHI 336
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224055555|ref|XP_002298537.1| predicted protein [Populus trichocarpa] gi|222845795|gb|EEE83342.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 161/214 (75%), Positives = 181/214 (84%), Gaps = 8/214 (3%)
Query: 52 FLSACLQLMIALCLVLLTTALEYG-------IFVLMLASFQGILRLRGRPTVAFDQQGLV 104
+ + +++LC+ + + G I+ L + + QGILRLRGRPTVA+DQQGLV
Sbjct: 112 YFKGHKERVVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAYDQQGLV 171
Query: 105 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164
FAVAME GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT+NNIYVLD
Sbjct: 172 FAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTSNNIYVLD 231
Query: 165 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV 224
AYGGEKRCGFSLEPSPNT EATFTPDGQYVVSGSGDGTLHAWNIN RNEV+CWN +IG+
Sbjct: 232 AYGGEKRCGFSLEPSPNTKIEATFTPDGQYVVSGSGDGTLHAWNINMRNEVSCWNSHIGI 291
Query: 225 VACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDE 258
+CLKWAPRRAMFVAAS+VL+FWIP+ SS ST E
Sbjct: 292 ASCLKWAPRRAMFVAASTVLTFWIPD-SSKSTVE 324
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255560888|ref|XP_002521457.1| COMPASS component SWD2, putative [Ricinus communis] gi|223539356|gb|EEF40947.1| COMPASS component SWD2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 336 bits (862), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 158/202 (78%), Positives = 177/202 (87%), Gaps = 7/202 (3%)
Query: 60 MIALCLV-----LLTTALEYGIFV--LMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAG 112
+++LC+ ++ +L++ + + L + + QGIL LRGRPTVA+DQQGLVFAVAME G
Sbjct: 117 VVSLCMSPINDSFMSASLDHSVRIWDLRVNACQGILHLRGRPTVAYDQQGLVFAVAMEGG 176
Query: 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 172
AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT+NNIYVLDAYGGEKRC
Sbjct: 177 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTSNNIYVLDAYGGEKRC 236
Query: 173 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 232
GFSLEPSPNT EATFTPDGQYVVSGSGDGTLHAWNIN RNEVA WN +IGV +C KWAP
Sbjct: 237 GFSLEPSPNTTIEATFTPDGQYVVSGSGDGTLHAWNINMRNEVASWNSHIGVASCFKWAP 296
Query: 233 RRAMFVAASSVLSFWIPNPSSN 254
RRAMFVAASSVL+FWIPNPS +
Sbjct: 297 RRAMFVAASSVLTFWIPNPSKS 318
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141285|ref|XP_002324005.1| predicted protein [Populus trichocarpa] gi|222867007|gb|EEF04138.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 159/236 (67%), Positives = 192/236 (81%), Gaps = 15/236 (6%)
Query: 37 IIEFFATSKGIRR-GLFLSACLQL-------MIALCLV-----LLTTALEYGIFV--LML 81
+ +T + +R L+ + CL+ +++LC+ ++++L++ I + L +
Sbjct: 86 VYHLDSTGESLRYLSLYDNRCLRYFKGHKDKVVSLCMSPINDSFMSSSLDHSIRIWDLRV 145
Query: 82 ASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCD 141
+ QGIL LRGRPTVA+DQQGLVFAVAME GAIKLFDSRSYDKGPFDTFLVGGDTAEVCD
Sbjct: 146 NACQGILHLRGRPTVAYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVCD 205
Query: 142 IKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 201
IKFSNDGKSMLLTTT+NNIYVLDAYGG+KRCGFSLEPSP+T EATFTPDGQYVVSGSGD
Sbjct: 206 IKFSNDGKSMLLTTTSNNIYVLDAYGGDKRCGFSLEPSPSTTIEATFTPDGQYVVSGSGD 265
Query: 202 GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNSTD 257
GTLHAWNIN +NEV+CWN +IG+ +CLKWAPRRAMFVAAS+VL+FWIP+ S + D
Sbjct: 266 GTLHAWNINMQNEVSCWNSHIGIASCLKWAPRRAMFVAASTVLTFWIPDSSKPTVD 321
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446692|ref|XP_004141105.1| PREDICTED: WD repeat-containing protein 82-B-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 327 bits (837), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 158/207 (76%), Positives = 178/207 (85%), Gaps = 8/207 (3%)
Query: 60 MIALCLV-----LLTTALEYGIFV--LMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAG 112
+++LC+ ++ +L++ + + L + + QGILRLRGRPTVA+DQQGLVFAVAME G
Sbjct: 117 VVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAYDQQGLVFAVAMEGG 176
Query: 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 172
AIKLFDSRSYDKGPFDTFLVGGD AEV DIKFSNDGKSMLLTTTNNNIYVLDAYGGEK+C
Sbjct: 177 AIKLFDSRSYDKGPFDTFLVGGDMAEVFDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKQC 236
Query: 173 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 232
GFSLEPSPNT EATFTPDGQYVVSGSGDGTLHAWNIN R EVA WN +IGV +CLKWAP
Sbjct: 237 GFSLEPSPNTTIEATFTPDGQYVVSGSGDGTLHAWNINKRAEVASWNSHIGVASCLKWAP 296
Query: 233 RRAMFVAASSVLSFWIPNPSSNSTDES 259
RR MFVAASSVL+FWIPN ++ ST ES
Sbjct: 297 RRVMFVAASSVLTFWIPN-ATKSTGES 322
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449524044|ref|XP_004169033.1| PREDICTED: WD repeat-containing protein 82-B-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 159/207 (76%), Positives = 175/207 (84%), Gaps = 8/207 (3%)
Query: 60 MIALCLVLLTTALEYG-------IFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAG 112
+++LC+ + + G I+ L + + QGILRLRGRPTVA+DQQGLVFAVAME G
Sbjct: 22 VVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAYDQQGLVFAVAMEGG 81
Query: 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 172
AIKLFDSRSYDKGPFDTFLVGGD AEV DIKFSNDGKSMLLTTTNNNIYVLDAYGGEK+C
Sbjct: 82 AIKLFDSRSYDKGPFDTFLVGGDMAEVFDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKQC 141
Query: 173 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 232
GFSLEPSPNT EATFTPDGQYVVSGSGDGTLHAWNIN R EVA WN +IGV +CLKWAP
Sbjct: 142 GFSLEPSPNTTIEATFTPDGQYVVSGSGDGTLHAWNINKRAEVASWNSHIGVASCLKWAP 201
Query: 233 RRAMFVAASSVLSFWIPNPSSNSTDES 259
RR MFVAASSVL+FWIPN ++ ST ES
Sbjct: 202 RRVMFVAASSVLTFWIPN-ATKSTGES 227
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359807248|ref|NP_001241111.1| uncharacterized protein LOC100776353 [Glycine max] gi|255647114|gb|ACU24025.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 149/210 (70%), Positives = 169/210 (80%), Gaps = 7/210 (3%)
Query: 52 FLSACLQLMIALCLVLLTTALEYG-------IFVLMLASFQGILRLRGRPTVAFDQQGLV 104
+ Q +++LC+ + + G I+ L + + QGIL LRGRP VA+DQQGLV
Sbjct: 111 YFKGHKQRVVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILHLRGRPAVAYDQQGLV 170
Query: 105 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164
FAVAME GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD
Sbjct: 171 FAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 230
Query: 165 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV 224
AYGGEKRCGFSLEPSP T EATFTPDG+Y+V+GSG GT+ W+I T+NEVACW +IGV
Sbjct: 231 AYGGEKRCGFSLEPSPGTPIEATFTPDGKYMVAGSGSGTMQVWSIETKNEVACWTSHIGV 290
Query: 225 VACLKWAPRRAMFVAASSVLSFWIPNPSSN 254
+CLKWAPRRAMF AASSVL+FWIPN S
Sbjct: 291 PSCLKWAPRRAMFAAASSVLTFWIPNNDSK 320
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224029213|gb|ACN33682.1| unknown [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 149/217 (68%), Positives = 176/217 (81%), Gaps = 14/217 (6%)
Query: 51 LFLSACLQL-------MIALCLV-----LLTTALEYGIFV--LMLASFQGILRLRGRPTV 96
L+ + CL+ +++LC+ ++ +L++ + + L + + QGILRLRGRP+V
Sbjct: 102 LYDNRCLRYFKGHKDRVVSLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPSV 161
Query: 97 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 156
A+DQQGLVFAVAME GAIKLFDSRSYDKGPFDTFLVGGDTAEV DIKFSNDGKSMLLTTT
Sbjct: 162 AYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTT 221
Query: 157 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 216
NN+IYVLDAYGG+KRCGFSLEPSPN EA FTPDGQYV+SGSGDGTLHAWNINT E+A
Sbjct: 222 NNHIYVLDAYGGDKRCGFSLEPSPNVTNEAAFTPDGQYVISGSGDGTLHAWNINTVQEIA 281
Query: 217 CWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSS 253
CWN +IG + LKWAPRRAMF AS+ L+FWIPN S+
Sbjct: 282 CWNSHIGPITALKWAPRRAMFATASTALTFWIPNQSN 318
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|226501628|ref|NP_001152284.1| set1 complex component swd2 [Zea mays] gi|195654651|gb|ACG46793.1| set1 complex component swd2 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 314 bits (804), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 149/217 (68%), Positives = 176/217 (81%), Gaps = 14/217 (6%)
Query: 51 LFLSACLQL-------MIALCLV-----LLTTALEYGIFV--LMLASFQGILRLRGRPTV 96
L+ + CL+ +++LC+ ++ +L++ + + L + + QGILRLRGRP+V
Sbjct: 102 LYDNRCLRYFKGHKDRVVSLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPSV 161
Query: 97 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 156
A+DQQGLVFAVAME GAIKLFDSRSYDKGPFDTFLVGGDTAEV DIKFSNDGKSMLLTTT
Sbjct: 162 AYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTT 221
Query: 157 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 216
NN+IYVLDAYGG+KRCGFSLEPSPN EA FTPDGQYV+SGSGDGTLHAWNINT E+A
Sbjct: 222 NNHIYVLDAYGGDKRCGFSLEPSPNVTNEAAFTPDGQYVISGSGDGTLHAWNINTVQEIA 281
Query: 217 CWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSS 253
CWN +IG + LKWAPRRAMF AS+ L+FWIPN S+
Sbjct: 282 CWNSHIGPITALKWAPRRAMFATASTALTFWIPNQSN 318
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 271 | ||||||
| TAIR|locus:2222612 | 330 | AT5G14530 "AT5G14530" [Arabido | 0.682 | 0.560 | 0.775 | 5.7e-75 | |
| TAIR|locus:2154996 | 331 | AT5G66240 "AT5G66240" [Arabido | 0.616 | 0.504 | 0.485 | 1.8e-39 | |
| DICTYBASE|DDB_G0278945 | 319 | DDB_G0278945 "WD repeat-contai | 0.619 | 0.526 | 0.452 | 1.3e-36 | |
| FB|FBgn0032030 | 317 | Wdr82 [Drosophila melanogaster | 0.601 | 0.514 | 0.405 | 2e-31 | |
| UNIPROTKB|Q5ZMV7 | 313 | WDR82 "WD repeat-containing pr | 0.608 | 0.527 | 0.404 | 5.4e-31 | |
| UNIPROTKB|E2RGF2 | 313 | WDR82 "Uncharacterized protein | 0.608 | 0.527 | 0.404 | 6.9e-31 | |
| UNIPROTKB|Q6UXN9 | 313 | WDR82 "WD repeat-containing pr | 0.608 | 0.527 | 0.404 | 6.9e-31 | |
| UNIPROTKB|F2Z5U3 | 313 | WDR82 "Uncharacterized protein | 0.608 | 0.527 | 0.404 | 6.9e-31 | |
| MGI|MGI:1924555 | 313 | Wdr82 "WD repeat domain contai | 0.608 | 0.527 | 0.404 | 6.9e-31 | |
| ZFIN|ZDB-GENE-030131-333 | 600 | wdr82 "WD repeat domain contai | 0.583 | 0.263 | 0.409 | 3.5e-28 |
| TAIR|locus:2222612 AT5G14530 "AT5G14530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 145/187 (77%), Positives = 158/187 (84%)
Query: 79 LMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE 138
L + + QGIL LRGRP VA+DQQGLVFA+AME GA+KLFDSR YDKGPFDTFLVGGDTAE
Sbjct: 143 LRVNACQGILHLRGRPAVAYDQQGLVFAIAMEGGAVKLFDSRCYDKGPFDTFLVGGDTAE 202
Query: 139 VCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 198
V DIKFSNDGKSMLLTTTNNNIYVLDAY GEK+CGFSLEPS T EATFTPDG+YV+SG
Sbjct: 203 VNDIKFSNDGKSMLLTTTNNNIYVLDAYRGEKKCGFSLEPSQGTPIEATFTPDGKYVLSG 262
Query: 199 SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNST-- 256
SGDGTLHAWNI +EVA W NIGVV+CLKWAPRRAMFVAAS+VL+FWIPN +
Sbjct: 263 SGDGTLHAWNIENPSEVARWENNIGVVSCLKWAPRRAMFVAASTVLTFWIPNDGESPAPA 322
Query: 257 DESTDPQ 263
D TD Q
Sbjct: 323 DPPTDQQ 329
|
|
| TAIR|locus:2154996 AT5G66240 "AT5G66240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 82/169 (48%), Positives = 114/169 (67%)
Query: 85 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF 144
QG+LR++GRP A+D QGL+FA+A G I++FD+R Y+KGPF+ F VGGD +E +KF
Sbjct: 155 QGLLRVQGRPAAAYDDQGLIFAIAF-GGYIRMFDARMYEKGPFEIFSVGGDLSEANVVKF 213
Query: 145 SNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT-EATFTPDGQYVVSGSGDGT 203
SNDG+ MLLTT + I+VLD++ G FS++P +T +A F+P+G +VVSGSGDG+
Sbjct: 214 SNDGRLMLLTTMDGFIHVLDSFRGTLLSTFSVKPVAGESTLDAAFSPEGMFVVSGSGDGS 273
Query: 204 LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPS 252
HAW + + +V W G +KW P MFV SS L+F IP+ S
Sbjct: 274 THAWGVRSGKQVHSWMGLGSEPPVIKWGPGSPMFVTGSSELAFVIPDLS 322
|
|
| DICTYBASE|DDB_G0278945 DDB_G0278945 "WD repeat-containing protein 82" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 77/170 (45%), Positives = 109/170 (64%)
Query: 85 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT-AEVCDIK 143
QG+LR GRP V+FD QG++FA A+ IKL+D R+YDKGPF +F + E +K
Sbjct: 148 QGLLRRNGRPAVSFDPQGIIFATAVSVNTIKLYDLRNYDKGPFSSFSIDHPIPVEWTSMK 207
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT-EATFTPDGQYVVSGSGDG 202
F+ DGK +LL+T N I+++D++ GE + ++ + N + E++F+PD QYV+SGS DG
Sbjct: 208 FTADGKYILLSTKTNIIFLIDSFTGEVKQRYTSFKNDNGSVIESSFSPDAQYVLSGSEDG 267
Query: 203 TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPS 252
T+H W T EVA W G+ V ++W PR M A S L+FWIPN S
Sbjct: 268 TVHIWKTLTGEEVAVWGGHSSTVGRVQWNPRSMMAATACSNLAFWIPNDS 317
|
|
| FB|FBgn0032030 Wdr82 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 69/170 (40%), Positives = 111/170 (65%)
Query: 85 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCD--- 141
QG++ L GRP A+D +GL+FA + + +IKL+D RS+DKGPF TF + + + CD
Sbjct: 144 QGLMHLSGRPIAAYDPEGLIFAAGVNSESIKLYDLRSFDKGPFVTFKLNQE--KECDWTG 201
Query: 142 IKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS-PNTNTEATFTPDGQYVVSGSG 200
+KFS DGK++L++T + I ++DA+ G F+ P+ EA+F+PD Q++ SGS
Sbjct: 202 LKFSRDGKTILISTNGSVIRLVDAFHGTPLQTFTGYPNNKGIPIEASFSPDSQFIFSGST 261
Query: 201 DGTLHAWNINTRNEVACWNGNI-GVVACLKWAPRRAMFVAASSVLSFWIP 249
DG +H WN +T N+V+ NG+ G V C+++ P+ M +A + ++FW+P
Sbjct: 262 DGRVHIWNADTGNKVSVLNGDHPGPVQCVQFNPKYMMLASACTNMAFWLP 311
|
|
| UNIPROTKB|Q5ZMV7 WDR82 "WD repeat-containing protein 82" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 68/168 (40%), Positives = 105/168 (62%)
Query: 85 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIK 143
QG++ L+G+P +FD +GL+FA + + +KL+D RS+DKGPF TF + D T E +K
Sbjct: 142 QGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLK 201
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDG 202
FSNDGK +L++T I ++DA+ G F S EA+FTPD Q+++ GS DG
Sbjct: 202 FSNDGKLILISTNGGFIRLIDAFKGAVLHTFGGYNNSKAVTLEASFTPDSQFIMIGSEDG 261
Query: 203 TLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 249
+H WN + +VA +G + G + CL++ P+ F +A S ++FW+P
Sbjct: 262 KIHVWNGESGMKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309
|
|
| UNIPROTKB|E2RGF2 WDR82 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 68/168 (40%), Positives = 106/168 (63%)
Query: 85 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIK 143
QG++ L+G+P +FD +GL+FA + + +KL+D RS+DKGPF TF + D T E +K
Sbjct: 142 QGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLK 201
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDG 202
FSNDGK +L++T + I ++DA+ G F S EA+FTPD Q+++ GS DG
Sbjct: 202 FSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDG 261
Query: 203 TLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 249
+H WN + +VA +G + G + CL++ P+ F +A S ++FW+P
Sbjct: 262 KIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309
|
|
| UNIPROTKB|Q6UXN9 WDR82 "WD repeat-containing protein 82" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 68/168 (40%), Positives = 106/168 (63%)
Query: 85 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIK 143
QG++ L+G+P +FD +GL+FA + + +KL+D RS+DKGPF TF + D T E +K
Sbjct: 142 QGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLK 201
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDG 202
FSNDGK +L++T + I ++DA+ G F S EA+FTPD Q+++ GS DG
Sbjct: 202 FSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDG 261
Query: 203 TLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 249
+H WN + +VA +G + G + CL++ P+ F +A S ++FW+P
Sbjct: 262 KIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309
|
|
| UNIPROTKB|F2Z5U3 WDR82 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 68/168 (40%), Positives = 106/168 (63%)
Query: 85 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIK 143
QG++ L+G+P +FD +GL+FA + + +KL+D RS+DKGPF TF + D T E +K
Sbjct: 142 QGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLK 201
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDG 202
FSNDGK +L++T + I ++DA+ G F S EA+FTPD Q+++ GS DG
Sbjct: 202 FSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDG 261
Query: 203 TLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 249
+H WN + +VA +G + G + CL++ P+ F +A S ++FW+P
Sbjct: 262 KIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309
|
|
| MGI|MGI:1924555 Wdr82 "WD repeat domain containing 82" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 68/168 (40%), Positives = 106/168 (63%)
Query: 85 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIK 143
QG++ L+G+P +FD +GL+FA + + +KL+D RS+DKGPF TF + D T E +K
Sbjct: 142 QGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLK 201
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDG 202
FSNDGK +L++T + I ++DA+ G F S EA+FTPD Q+++ GS DG
Sbjct: 202 FSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDG 261
Query: 203 TLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 249
+H WN + +VA +G + G + CL++ P+ F +A S ++FW+P
Sbjct: 262 KIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309
|
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| ZFIN|ZDB-GENE-030131-333 wdr82 "WD repeat domain containing 82" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 321 (118.1 bits), Expect = 3.5e-28, P = 3.5e-28
Identities = 66/161 (40%), Positives = 99/161 (61%)
Query: 85 QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIK 143
QG++ L+G+P +FD +GL+FA + + +KL+D RS+DKGPF TF + + T E +K
Sbjct: 142 QGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKLQYERTCEWTGLK 201
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDG 202
FSNDGK +L++T + VLDA+ G F S EA+FTPD Q+++ GS DG
Sbjct: 202 FSNDGKLILVSTNGGTLRVLDAFKGAVLHSFGGYNNSKGVILEASFTPDSQFIMIGSEDG 261
Query: 203 TLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASS 242
+H WN + +VA +G + G V CL++ P+ F +A S
Sbjct: 262 KIHVWNAESGMKVALLDGKHTGPVTCLQFNPKFMTFASACS 302
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00020679001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (338 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00017338001 | SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (193 aa) | • | • | 0.503 | ||||||
 | GSVIVG00015929001 | SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (340 aa) | • | 0.490 | |||||||
 | GSVIVG00034167001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (405 aa) | • | 0.487 | |||||||
 | GSVIVG00028914001 | SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (420 aa) | • | 0.487 | |||||||
 | GSVIVG00017915001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (459 aa) | • | 0.487 | |||||||
 | GSVIVG00016163001 | SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (421 aa) | • | 0.487 | |||||||
 | GSVIVG00014835001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (448 aa) | • | 0.479 | |||||||
 | GSVIVG00023743001 | SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (298 aa) | • | 0.477 | |||||||
 | GSVIVG00034424001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (217 aa) | • | 0.473 | |||||||
 | GSVIVG00038020001 | SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (438 aa) | • | 0.471 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 271 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-08 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-06 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-05 | |
| COG0823 | 425 | COG0823, TolB, Periplasmic component of the Tol bi | 3e-05 | |
| TIGR02800 | 417 | TIGR02800, propeller_TolB, tol-pal system beta pro | 2e-04 | |
| PRK05137 | 435 | PRK05137, tolB, translocation protein TolB; Provis | 0.001 | |
| PRK04922 | 433 | PRK04922, tolB, translocation protein TolB; Provis | 0.002 | |
| PRK02889 | 427 | PRK02889, tolB, translocation protein TolB; Provis | 0.003 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.003 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 9e-13
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 6/148 (4%)
Query: 95 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 154
+VAF G A + + G IKL+D R+ T G T EV + FS DG+ +L +
Sbjct: 140 SVAFSPDGTFVASSSQDGTIKLWDLRT--GKCVATLT--GHTGEVNSVAFSPDGEKLLSS 195
Query: 155 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 214
+++ I + D G +C +L N F+PDG + SGS DGT+ W++ T
Sbjct: 196 SSDGTIKLWDLSTG--KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC 253
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAASS 242
V +G+ V L W+P + S+
Sbjct: 254 VQTLSGHTNSVTSLAWSPDGKRLASGSA 281
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-10
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 10/150 (6%)
Query: 95 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 154
VA G A I+L+D + T G T+ V + FS DG+ +L+
Sbjct: 56 DVAASADGTYLASGSSDKTIRLWDLET--GECVRTL--TGHTSYVSSVAFSPDGR--ILS 109
Query: 155 TT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR 212
++ + I V D G+ C +L + F+PDG +V S S DGT+ W++ T
Sbjct: 110 SSSRDKTIKVWDVETGK--CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167
Query: 213 NEVACWNGNIGVVACLKWAPRRAMFVAASS 242
VA G+ G V + ++P +++SS
Sbjct: 168 KCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.8 bits (138), Expect = 2e-09
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 8/170 (4%)
Query: 95 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 154
+VAF G + A G ++L+D + T G V + FS DG ++
Sbjct: 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK--GHEGPVSSLSFSPDGSLLVSG 346
Query: 155 TTNNN-IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 213
+++ I + D G+ + +F+PDG+ V SGS DGT+ W+++T +
Sbjct: 347 GSDDGTIRLWDLRTGKP---LKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGS 403
Query: 214 EVACWNGNIGVVACLKWAPRRAMFVAASS--VLSFWIPNPSSNSTDESTD 261
+ +G+ V L ++P + SS + W S S S D
Sbjct: 404 LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPD 453
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.6 bits (127), Expect = 3e-08
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 8/159 (5%)
Query: 95 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 154
++AF G + G IKL+D + + + D++ S DG S+LL
Sbjct: 70 SIAFSPDGELLLSGSSDGTIKLWDLDN-GEKLIKSLEGLHDSSVSKLALSSPDGNSILLA 128
Query: 155 TT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINT 211
++ + + + D + +LE + T F+PDG+ + SGS DGT+ W++ T
Sbjct: 129 SSSLDGTVKLWD-LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187
Query: 212 RNEVACWNGNIGVVACLKWAPRRAMFVAASS---VLSFW 247
++ G+ V+ L ++P + +A+ S + W
Sbjct: 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.6 bits (127), Expect = 4e-08
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 8/150 (5%)
Query: 96 VAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 154
+AF G L+ A G I+L+D + G + G + V FS DG +
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLST---GKLLRSTLSGHSDSVV-SSFSPDGSLLASG 259
Query: 155 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 214
+++ I + D +L ++ F+PDG+ + SGS DGT+ W++ T
Sbjct: 260 SSDGTIRLWDLRSS-SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318
Query: 215 VACWN--GNIGVVACLKWAPRRAMFVAASS 242
++ G+ G V+ L ++P ++ V+ S
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 136 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV 195
T V + FS DGK + + + I V D GE P + + DG Y+
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRD--VAASADGTYL 66
Query: 196 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 242
SGS D T+ W++ T V G+ V+ + ++P + ++S
Sbjct: 67 ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR 113
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.5 bits (114), Expect = 2e-06
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
Query: 95 TVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL 153
+++F G + + G I+L+D G L G V + FS DG+ +
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRLWD---LRTGKPLKTLEGHSN--VLSVSFSPDGRVVSS 387
Query: 154 TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 213
+T+ + + D G +L+ + T F+PDG+ + SGS D T+ W++ T
Sbjct: 388 GSTDGTVRLWDLSTGSLL--RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSL 445
Query: 214 EVACWNGNIGVVA 226
+ ++ + V+A
Sbjct: 446 KSVSFSPDGKVLA 458
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 95 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG---GDTAEVCDIKFSNDGKSM 151
+VAF G + G IKL+D + +G G V + FS DG +
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLST-------GKCLGTLRGHENGVNSVAFSPDGYLL 234
Query: 152 LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
+ + I V D GE C +L N+ T ++PDG+ + SGS DGT+ W+
Sbjct: 235 ASGSEDGTIRVWDLRTGE--CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|223893 COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 141 DIKFSNDGKSMLLTTTNN---NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 197
FS DG + +++ + +IY++D G L NT +++PDG +V
Sbjct: 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP---RLTNGFGINTSPSWSPDGSKIVF 298
Query: 198 GSGDG 202
S G
Sbjct: 299 TSDRG 303
|
Length = 425 |
| >gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 144 FSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 196
FS DG + ++ + N +IYV+D G + L P +TE +++PDG+ +
Sbjct: 241 FSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT---RLTNGPGIDTEPSWSPDGKSIA 293
|
Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 417 |
| >gnl|CDD|235351 PRK05137, tolB, translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 144 FSNDGKSMLLTTTNN---NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 196
FS DG+ ++++ + +IY +D G L SP +T +++PDG +V
Sbjct: 253 FSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT---RLTDSPAIDTSPSYSPDGSQIV 305
|
Length = 435 |
| >gnl|CDD|179892 PRK04922, tolB, translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 144 FSNDGKSMLLTTT---NNNIYVLD-AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 199
FS DG+ + LT + N IYV+D R L +TE T+ PDG+ + S
Sbjct: 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR----LTNHFGIDTEPTWAPDGKSIYFTS 310
Query: 200 GDG 202
G
Sbjct: 311 DRG 313
|
Length = 433 |
| >gnl|CDD|235083 PRK02889, tolB, translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 145 SNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV 195
S DG+++ + + N+ IY ++A G R L S +TE F+PDG+ +
Sbjct: 248 SPDGRTLAVALSRDGNSQIYTVNADGSGLR---RLTQSSGIDTEPFFSPDGRSI 298
|
Length = 427 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 34.3 bits (79), Expect = 0.003
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 188 FTPDGQYVVSGSGDGTLHAWN 208
F+PDG + SGS DGT+ W+
Sbjct: 19 FSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 33.8 bits (78), Expect = 0.004
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 188 FTPDGQYVVSGSGDGTLHAWN 208
F+PDG+Y+ SGS DGT+ W+
Sbjct: 20 FSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 271 | |||
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.98 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.98 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.98 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.98 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.94 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.93 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.93 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.92 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.92 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.91 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.91 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.91 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.91 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.9 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.9 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.9 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.89 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.89 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.88 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.88 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.86 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.86 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.86 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.86 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.85 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.85 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.85 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.85 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.85 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.84 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.84 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.84 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.83 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.82 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.82 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.82 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.82 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.82 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.82 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.82 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.81 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.81 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.81 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.8 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.8 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.8 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.79 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.79 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.78 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.78 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.78 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.77 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.77 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.77 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.76 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.76 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.76 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.75 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.75 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.75 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.75 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.74 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.74 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.73 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.73 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.73 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.72 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.72 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.72 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.72 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.71 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.71 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.7 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.7 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.7 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.69 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.69 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.68 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.68 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.68 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.67 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.67 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.66 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.65 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.64 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.64 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.64 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.63 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.63 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.62 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.61 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.6 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.6 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.59 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.58 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.57 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.57 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.55 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.55 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.54 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.53 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.49 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.49 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.49 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.48 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.47 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.47 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.45 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.44 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.43 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.41 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.39 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.38 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.36 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.35 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.35 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.35 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.35 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.35 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.32 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.32 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.3 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.29 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.29 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.29 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.27 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.25 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.23 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.22 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.21 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.18 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.17 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.16 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.16 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 99.16 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.16 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.15 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.15 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.12 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.11 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.09 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 99.07 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.06 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.06 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.05 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.03 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.03 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.98 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.98 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.98 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.97 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.97 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.96 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.96 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.95 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.94 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.94 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.86 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.84 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.84 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.83 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.8 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.79 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.75 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.74 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.73 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.73 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.73 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.71 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.71 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.68 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.65 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.64 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.64 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.63 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.61 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.56 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.56 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.55 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.54 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.5 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.49 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.48 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.47 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.47 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.42 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.42 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.41 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.39 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.39 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.37 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.36 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.34 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 98.31 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 98.27 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.25 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.24 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 98.24 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.23 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.21 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.17 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.16 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.16 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 98.14 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.11 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.1 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.03 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.03 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.03 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.02 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.01 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.0 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.99 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.9 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.86 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.86 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 97.86 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.85 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.8 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.77 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.75 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.74 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.73 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.73 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.72 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.68 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.67 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.63 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.62 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.61 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.61 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.59 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.51 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 97.48 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.47 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.46 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.45 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.43 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.38 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.37 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.35 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.28 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.27 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 97.24 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.22 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.21 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.18 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.18 | |
| PRK10115 | 686 | protease 2; Provisional | 97.17 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.14 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 97.1 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 97.08 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.07 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.06 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.84 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.84 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.8 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.78 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.76 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.71 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 96.69 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.68 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.67 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.65 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 96.42 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 96.36 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.18 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.14 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.13 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.08 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 96.07 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.01 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 96.01 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 95.87 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.84 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.81 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 95.77 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.68 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.65 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.64 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.6 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 95.59 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 95.58 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.53 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.51 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 95.24 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.24 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 95.18 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 95.18 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.14 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 95.13 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 94.92 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 94.86 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.84 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.81 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 94.73 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.61 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 94.54 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.53 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.48 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.42 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 94.41 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 94.36 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.12 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.11 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.01 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 93.93 | |
| KOG3522 | 925 | consensus Predicted guanine nucleotide exchange fa | 93.89 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 93.75 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 93.74 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 93.73 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 93.71 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 93.47 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 93.38 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 93.28 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 93.18 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 93.02 | |
| KOG3522 | 925 | consensus Predicted guanine nucleotide exchange fa | 92.71 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 92.48 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 92.4 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 92.35 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 92.34 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 92.23 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 92.15 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 92.14 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 92.1 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 91.95 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 91.86 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.54 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 90.95 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 90.77 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 90.52 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 90.24 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 90.14 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 90.1 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 89.83 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 89.75 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 89.68 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 89.43 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 89.42 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 89.21 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 89.05 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 88.8 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 88.62 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 88.31 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 87.82 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 87.57 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 87.14 | |
| PRK10115 | 686 | protease 2; Provisional | 87.01 | |
| PLN02153 | 341 | epithiospecifier protein | 86.89 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 86.28 | |
| PLN02153 | 341 | epithiospecifier protein | 85.98 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 85.66 |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=265.86 Aligned_cols=241 Identities=17% Similarity=0.163 Sum_probs=214.4
Q ss_pred EeeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCC-chhhhhhhhhhccCceEEEEEecCcce
Q 024185 6 FALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACL-QLMIALCLVLLTTALEYGIFVLMLASF 84 (271)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~ 84 (271)
+..+....++-+.-+|.+.+|+.... ..+..|.+|...+.++.|+|.. .. ++++++.||++++|++++..+
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~~----~~~~~l~gH~~~v~~~~fhP~~~~~----~lat~s~Dgtvklw~~~~e~~ 253 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQC----NLLQTLRGHTSRVGAAVFHPVDSDL----NLATASADGTVKLWKLSQETP 253 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCCc----ceeEEEeccccceeeEEEccCCCcc----ceeeeccCCceeeeccCCCcc
Confidence 33344455555556888888887666 5567799999999999999983 32 288999999999999999999
Q ss_pred eEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEE
Q 024185 85 QGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 162 (271)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 162 (271)
++.+.+|. +..++|+|+|++|++++.|.+-++||++++.. .....||..+|.+++|.|||.++++|+.|..-++
T Consensus 254 l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E----lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 254 LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE----LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh----hHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 99999986 44499999999999999999999999999886 5567799999999999999999999999999999
Q ss_pred EECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEec-CCcEEEEeC
Q 024185 163 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP-RRAMFVAAS 241 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 241 (271)
||+++++++..+.+|..+ |.++.|+|+|..+++|+.|++++|||++....+.++++|..-|+.+.|+| .|.+|++++
T Consensus 330 WDlRtgr~im~L~gH~k~--I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKE--ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred eecccCcEEEEecccccc--eeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence 999999999999999887 99999999999999999999999999999999999999999999999999 688999998
Q ss_pred --CeEEEEcCCCCCCCcCCCC
Q 024185 242 --SVLSFWIPNPSSNSTDEST 260 (271)
Q Consensus 242 --~~v~iw~~~~~~~~~~~~~ 260 (271)
++++||...+..+......
T Consensus 408 yD~t~kiWs~~~~~~~ksLaG 428 (459)
T KOG0272|consen 408 YDNTVKIWSTRTWSPLKSLAG 428 (459)
T ss_pred cCcceeeecCCCcccchhhcC
Confidence 8899999999888776653
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=247.97 Aligned_cols=244 Identities=18% Similarity=0.215 Sum_probs=206.2
Q ss_pred EEEEEeeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC
Q 024185 2 VLIVFALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML 81 (271)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~ 81 (271)
||.+-.-|....|+-+..+-.+.+|+..+. ......++|+.-|.|++|+|||+. +|+|+.||+|++||.++
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te----Tp~~t~KgH~~WVlcvawsPDgk~-----iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTE----TPLFTCKGHKNWVLCVAWSPDGKK-----IASGSKDGSIRLWDPKT 188 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCC----CcceeecCCccEEEEEEECCCcch-----hhccccCCeEEEecCCC
Confidence 344444455566777777888888888776 444568899999999999999999 99999999999999999
Q ss_pred ccee-EEEecCC--cceEEEcC-----CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEE
Q 024185 82 ASFQ-GILRLRG--RPTVAFDQ-----QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL 153 (271)
Q Consensus 82 ~~~~-~~~~~~~--~~~~~~~~-----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 153 (271)
|+++ ..+.+|. +.+++|.| ..++||+++.||.++|||+..+.. .+.+.+|+.+|+|+.|--+| ++++
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~----~~~lsgHT~~VTCvrwGG~g-liyS 263 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC----VRTLSGHTASVTCVRWGGEG-LIYS 263 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE----EEEeccCccceEEEEEcCCc-eEEe
Confidence 8765 5678886 56688865 568999999999999999998887 88899999999999999765 7899
Q ss_pred EecCCeEEEEECCCCeEEEEeecCCC------------------------------------------------------
Q 024185 154 TTTNNNIYVLDAYGGEKRCGFSLEPS------------------------------------------------------ 179 (271)
Q Consensus 154 ~~~d~~i~~~d~~~~~~~~~~~~~~~------------------------------------------------------ 179 (271)
|+.|++|++|+...|++.+.+++|.+
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 99999999999876655444443321
Q ss_pred -----------------------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcE
Q 024185 180 -----------------------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAM 236 (271)
Q Consensus 180 -----------------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 236 (271)
..-|..+.||||++++++++.|.+|++||.++|+.+..+++|-+.|..++|+.|.++
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence 123778999999999999999999999999999999999999999999999999999
Q ss_pred EEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 237 FVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 237 l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
|++|| .++++|++++.++..+..
T Consensus 424 lVS~SkDsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred EEEcCCCceEEEEEeeeeeecccCC
Confidence 99999 789999999988766554
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=230.39 Aligned_cols=237 Identities=15% Similarity=0.193 Sum_probs=201.5
Q ss_pred eeEEeeec-ceeeEEEEeecccee-eEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 12 QALLFARQ-NIILILLESLCGIYQ-CMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 12 ~~l~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
..+++..+ +-.++.++......+ ...++.|.+|+..|..+..+++|++ .++++.|+++++||+.+++..+.|.
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~-----alS~swD~~lrlWDl~~g~~t~~f~ 102 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNF-----ALSASWDGTLRLWDLATGESTRRFV 102 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCce-----EEeccccceEEEEEecCCcEEEEEE
Confidence 34444443 556666665443221 1357789999999999999999999 8899999999999999999999999
Q ss_pred cCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC--CcEEEEEecCCeEEEEEC
Q 024185 90 LRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 90 ~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~ 165 (271)
+|. +.+++|++|.+.+++|+.|.+|++|++..... ....-..+.+-|.|+.|+|+ ...|++++.|+++++||+
T Consensus 103 GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck---~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl 179 (315)
T KOG0279|consen 103 GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK---YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNL 179 (315)
T ss_pred ecCCceEEEEecCCCceeecCCCcceeeeeeecccEE---EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEcc
Confidence 985 67799999999999999999999999987652 12222233788999999997 678999999999999999
Q ss_pred CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeE
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVL 244 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v 244 (271)
++.+....+.+|.+. ++.+.+||||...++|+.||.+.+||++.++.++.+. |...|.+++|+|+...|+.+. ..|
T Consensus 180 ~~~~l~~~~~gh~~~--v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sI 256 (315)
T KOG0279|consen 180 RNCQLRTTFIGHSGY--VNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSI 256 (315)
T ss_pred CCcchhhcccccccc--EEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCce
Confidence 999999999888876 9999999999999999999999999999999999886 678899999999998888887 669
Q ss_pred EEEcCCCCCCCcCCC
Q 024185 245 SFWIPNPSSNSTDES 259 (271)
Q Consensus 245 ~iw~~~~~~~~~~~~ 259 (271)
+|||++++....+..
T Consensus 257 kIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 257 KIWDLESKAVVEELK 271 (315)
T ss_pred EEEeccchhhhhhcc
Confidence 999999998876654
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=253.07 Aligned_cols=221 Identities=16% Similarity=0.205 Sum_probs=204.8
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG 92 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 92 (271)
.+.-+..+|.+.+|+.... ..+..+.+|..+|..++|+|+|++ |++++.|.+-++||++++..+...++|.
T Consensus 233 ~lat~s~Dgtvklw~~~~e----~~l~~l~gH~~RVs~VafHPsG~~-----L~TasfD~tWRlWD~~tk~ElL~QEGHs 303 (459)
T KOG0272|consen 233 NLATASADGTVKLWKLSQE----TPLQDLEGHLARVSRVAFHPSGKF-----LGTASFDSTWRLWDLETKSELLLQEGHS 303 (459)
T ss_pred ceeeeccCCceeeeccCCC----cchhhhhcchhhheeeeecCCCce-----eeecccccchhhcccccchhhHhhcccc
Confidence 4555566888888887665 555668999999999999999999 9999999999999999999888888885
Q ss_pred --cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 93 --RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 93 --~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
+..++|.|||..+++|+.|..-++||++++.. +..+.+|..+|.+++|+|+|..+|+|+.|++++|||++..+.
T Consensus 304 ~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~----im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 304 KGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC----IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE 379 (459)
T ss_pred cccceeEecCCCceeeccCccchhheeecccCcE----EEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence 67799999999999999999999999999997 888999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCceeeEEECC-CCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEE
Q 024185 171 RCGFSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFW 247 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw 247 (271)
+.++..|.+- |+.++|+| .|.+|++++.|+++++|..+++.+++.+.||.+.|.++..+||+.++++++ .++++|
T Consensus 380 ly~ipAH~nl--VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 380 LYTIPAHSNL--VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred ceecccccch--hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeec
Confidence 9999999887 99999999 689999999999999999999999999999999999999999999999999 889999
Q ss_pred c
Q 024185 248 I 248 (271)
Q Consensus 248 ~ 248 (271)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 6
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=264.31 Aligned_cols=206 Identities=17% Similarity=0.267 Sum_probs=192.6
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeE
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAI 114 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i 114 (271)
..+.+-+|.++|..+.|+|+.++ |+++++|+++|+|.+++..++..+++|. ++.+.|+|.|-++|+++.|++-
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rf-----LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tA 517 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRF-----LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTA 517 (707)
T ss_pred eeEEeecCCCceeeeeecccccc-----eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCcee
Confidence 44558899999999999999999 9999999999999999999999999986 4559999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCE
Q 024185 115 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 194 (271)
++|.....+. ...+.+|.+.|.|++|+|+..++++||.|.++++||..+|..++.|.+|..+ |.+++|||+|++
T Consensus 518 rLWs~d~~~P----lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~--V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 518 RLWSTDHNKP----LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP--VTALAFSPCGRY 591 (707)
T ss_pred eeeecccCCc----hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc--eEEEEEcCCCce
Confidence 9999988664 5557799999999999999999999999999999999999999999999887 999999999999
Q ss_pred EEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 195 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
|++|+.||.|++||+.+++.+..+.+|.+.|.++.|+.||..|++++ ++|++||+..-.
T Consensus 592 LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 99999999999999999999999999999999999999999999998 779999986643
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=235.51 Aligned_cols=241 Identities=19% Similarity=0.225 Sum_probs=202.0
Q ss_pred EEEEEeeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC
Q 024185 2 VLIVFALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML 81 (271)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~ 81 (271)
||.+-=-|....+.-++.+|++..++...+. ...+.+.+|+..|.+++|.|-...--...|++++.||.++|||+..
T Consensus 160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~---~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~ 236 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ---QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL 236 (480)
T ss_pred EEEEEECCCcchhhccccCCeEEEecCCCCC---cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC
Confidence 4445455777788888899999999988773 4556799999999999997643211111289999999999999999
Q ss_pred cceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCC-----------------------------------
Q 024185 82 ASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK----------------------------------- 124 (271)
Q Consensus 82 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----------------------------------- 124 (271)
+.++..+.+|. ++|+.|--+ .++++|+.|++|++|+...+..
T Consensus 237 ~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~ 315 (480)
T KOG0271|consen 237 GTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPK 315 (480)
T ss_pred ceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCC
Confidence 99999999985 677888644 4799999999999999766332
Q ss_pred ------------------------------------Ccce----EEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 125 ------------------------------------GPFD----TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 125 ------------------------------------~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
.|.. ...+.+|..-|..+.||||++++|+++.|..|++||
T Consensus 316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD 395 (480)
T ss_pred ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence 0000 112335668899999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--C
Q 024185 165 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--S 242 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~ 242 (271)
.++|+.+.+|.+|-.. |..++|+.|.++|++|+.|.++++||+++.+....+++|...|.++.|+|||..+++|+ .
T Consensus 396 g~tGk~lasfRGHv~~--VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdk 473 (480)
T KOG0271|consen 396 GRTGKFLASFRGHVAA--VYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDK 473 (480)
T ss_pred CCCcchhhhhhhccce--eEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCce
Confidence 9999999999999877 99999999999999999999999999999999999999999999999999999999998 5
Q ss_pred eEEEEc
Q 024185 243 VLSFWI 248 (271)
Q Consensus 243 ~v~iw~ 248 (271)
.+++|.
T Consensus 474 v~~lw~ 479 (480)
T KOG0271|consen 474 VLRLWR 479 (480)
T ss_pred EEEeec
Confidence 589984
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=218.60 Aligned_cols=215 Identities=13% Similarity=0.144 Sum_probs=194.3
Q ss_pred EEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcce--EEEcCCCCEEEEEecCCeEE
Q 024185 38 IEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK 115 (271)
Q Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~~i~ 115 (271)
.+.+++|.+.|.++.|+++.+. +++++.||.+.|||.-+...++.++....++ ++|+|.|+++|.|+-|+...
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~-----ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRR-----IVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred EEEecccccceeeeEecCCcCe-----EEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 3679999999999999999999 9999999999999999888888888887555 89999999999999999999
Q ss_pred EEeCCCCCCC--cceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECC-CC
Q 024185 116 LFDSRSYDKG--PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DG 192 (271)
Q Consensus 116 i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 192 (271)
||++.+.+.. ......+.+|.+.+.|+.|-+|+ .|++++.|.+..+||+++++.+..|.+|... |.+++++| ++
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gD--V~slsl~p~~~ 199 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGD--VMSLSLSPSDG 199 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCccc--EEEEecCCCCC
Confidence 9999866321 12345588999999999999865 5899999999999999999999999998876 99999999 99
Q ss_pred CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCCC
Q 024185 193 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDEST 260 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~~ 260 (271)
+.+++|+.|+..++||++.+.+.+.|.+|.+.|++++|.|+|.-+++|| ++.++||++..+.+...+.
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~ 269 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH 269 (343)
T ss_pred CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc
Confidence 9999999999999999999999999999999999999999999999999 8899999999877665553
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=216.58 Aligned_cols=228 Identities=14% Similarity=0.170 Sum_probs=198.1
Q ss_pred ceeEEeeecceeeEEEEeecc--ceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 11 TQALLFARQNIILILLESLCG--IYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
.+.+..+.-+..-.+++.... .-.....+.+.+|.+-+.++.|-+|+. +++++.|.+..+||+++++.+..|
T Consensus 109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~------ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH------ILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc------eEecCCCceEEEEEcccceEEEEe
Confidence 344444433444444444322 112234566899999999999999877 679999999999999999999999
Q ss_pred ecCC--cceEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEEC
Q 024185 89 RLRG--RPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 89 ~~~~--~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 165 (271)
.+|. +.+++++| +++.+++|+.|+..++||++.+.. ...+.+|+..|.+++|.|+|.-+++|+.|++.++||+
T Consensus 183 ~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c----~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC----VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce----eEeecccccccceEEEccCCCeeeecCCCceeEEEee
Confidence 9996 56688999 899999999999999999999887 7788899999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--Ce
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SV 243 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~ 243 (271)
|..+.+..+........|++++||..|++|++|..|..+.+||.-.++.+..+.+|...|+++..+|||..+++|| ..
T Consensus 259 RaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 259 RADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred cCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHh
Confidence 9999999888666667899999999999999999999999999999999999999999999999999999999999 77
Q ss_pred EEEEc
Q 024185 244 LSFWI 248 (271)
Q Consensus 244 v~iw~ 248 (271)
++||.
T Consensus 339 lriW~ 343 (343)
T KOG0286|consen 339 LRIWA 343 (343)
T ss_pred eeecC
Confidence 99994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=214.12 Aligned_cols=214 Identities=17% Similarity=0.209 Sum_probs=188.8
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec-----CcceeEEEecCC--cceEEEcCCCCEEEEEe
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM-----LASFQGILRLRG--RPTVAFDQQGLVFAVAM 109 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~-----~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~ 109 (271)
....+++|++.|..++..+.+.-+ +++++.|.++.+|++. .|.+++.+.+|+ +.-+..++||++.++++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~----l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDI----LVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCce----EEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc
Confidence 345689999999999999986654 6699999999999875 466788898886 45599999999999999
Q ss_pred cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEEC
Q 024185 110 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 189 (271)
Q Consensus 110 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~ 189 (271)
.|+.+++||+.+++. ...+.+|...|.+++|+||.+.+++|+.|.+|++|+.- +.+..++....+..+|.+++|+
T Consensus 83 wD~~lrlWDl~~g~~----t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 83 WDGTLRLWDLATGES----TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFS 157 (315)
T ss_pred ccceEEEEEecCCcE----EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEc
Confidence 999999999999876 77788999999999999999999999999999999976 4455555545435789999999
Q ss_pred CC--CCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 190 PD--GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 190 ~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
|+ ..++++++.|+++++||+++.+....+.+|.+.++.+++||||.+.++|+ |.+.+||++.++.....+
T Consensus 158 P~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~ 231 (315)
T KOG0279|consen 158 PNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE 231 (315)
T ss_pred CCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc
Confidence 98 67999999999999999999999999999999999999999999999998 889999999988766554
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=207.85 Aligned_cols=236 Identities=16% Similarity=0.129 Sum_probs=198.0
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
.+.+.+..+-.+.+++...+.. ..+..|++|.+.|..+.|..+|+. +.+|++||+++|||++...+.+.++..
T Consensus 52 k~~LAaa~~qhvRlyD~~S~np--~Pv~t~e~h~kNVtaVgF~~dgrW-----MyTgseDgt~kIWdlR~~~~qR~~~~~ 124 (311)
T KOG0315|consen 52 KKDLAAAGNQHVRLYDLNSNNP--NPVATFEGHTKNVTAVGFQCDGRW-----MYTGSEDGTVKIWDLRSLSCQRNYQHN 124 (311)
T ss_pred cchhhhccCCeeEEEEccCCCC--CceeEEeccCCceEEEEEeecCeE-----EEecCCCceEEEEeccCcccchhccCC
Confidence 4455555567777787776633 345779999999999999999999 889999999999999998777777655
Q ss_pred -CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC--
Q 024185 92 -GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-- 168 (271)
Q Consensus 92 -~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-- 168 (271)
.++++..+|+...|++|..+|.|++||+.+... ....+......|.++...|||++++.+...|..++|++-+.
T Consensus 125 spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c---~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~ 201 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC---THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT 201 (311)
T ss_pred CCcceEEecCCcceEEeecCCCcEEEEEccCCcc---ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc
Confidence 478899999999999999999999999988754 11122334578999999999999999999999999998654
Q ss_pred ----eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc-eeEEEecCCcceeEEEEEecCCcEEEEeC--
Q 024185 169 ----EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAMFVAAS-- 241 (271)
Q Consensus 169 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 241 (271)
+++.+++.|... +..+.+|||+++|++++.|.+++||+..+. +.-..+++|..++...+||.||+||++++
T Consensus 202 ~s~l~P~~k~~ah~~~--il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 202 ASELEPVHKFQAHNGH--ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSD 279 (311)
T ss_pred cccceEhhheecccce--EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCC
Confidence 345566666654 999999999999999999999999999887 55667899999999999999999999998
Q ss_pred CeEEEEcCCCCCCCcCCC
Q 024185 242 SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 242 ~~v~iw~~~~~~~~~~~~ 259 (271)
+.+++|+++.++....-.
T Consensus 280 ~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 280 HTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred CceeecccccCceeeecC
Confidence 779999999988665544
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=224.10 Aligned_cols=239 Identities=14% Similarity=0.159 Sum_probs=213.0
Q ss_pred eecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC-cceeE
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML-ASFQG 86 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~ 86 (271)
.|.-..++.+..+..+..++..++ ...+.+++|.+.+..+.|+..|++ +++++.|=.+++||.++ .++++
T Consensus 117 hp~~~~v~~as~d~tikv~D~~tg----~~e~~LrGHt~sv~di~~~a~Gk~-----l~tcSsDl~~~LWd~~~~~~c~k 187 (406)
T KOG0295|consen 117 HPSEALVVSASEDATIKVFDTETG----ELERSLRGHTDSVFDISFDASGKY-----LATCSSDLSAKLWDFDTFFRCIK 187 (406)
T ss_pred ccCceEEEEecCCceEEEEEccch----hhhhhhhccccceeEEEEecCccE-----EEecCCccchhheeHHHHHHHHH
Confidence 344344444557999999999999 446779999999999999999998 89999999999999987 45666
Q ss_pred EEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 87 ILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 87 ~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
.+.+| .+.+++|-|.|.++++++.|.+|+.|+..++.. ..++.+|...|..++.+.||..+++++.|.++++|-
T Consensus 188 s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c----v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 188 SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC----VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWV 263 (406)
T ss_pred HhcCcccceeeEEEEecCCeeeecccccceeEEeccccee----EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEE
Confidence 66665 467799999999999999999999999999987 888999999999999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCCCceeeEEECCC---------------CCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEE
Q 024185 165 AYGGEKRCGFSLEPSPNTNTEATFTPD---------------GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLK 229 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 229 (271)
+.++++...+..|..+ +.+++|.|. ++++++++.|++|++||+.++.++.++.+|..+|..++
T Consensus 264 ~~t~~~k~~lR~hEh~--vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a 341 (406)
T KOG0295|consen 264 VATKQCKAELREHEHP--VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA 341 (406)
T ss_pred eccchhhhhhhccccc--eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeE
Confidence 9999888889889887 888998763 25899999999999999999999999999999999999
Q ss_pred EecCCcEEEEeC--CeEEEEcCCCCCCCcCCCCC
Q 024185 230 WAPRRAMFVAAS--SVLSFWIPNPSSNSTDESTD 261 (271)
Q Consensus 230 ~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~~~ 261 (271)
|+|.|+||+++. +++++||+++++++...+..
T Consensus 342 f~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah 375 (406)
T KOG0295|consen 342 FSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH 375 (406)
T ss_pred EcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence 999999999997 88999999999988877643
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=205.66 Aligned_cols=225 Identities=41% Similarity=0.683 Sum_probs=202.9
Q ss_pred ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEc
Q 024185 20 NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFD 99 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 99 (271)
+..+..++.... .++++|.+|...|+.+..+|.++. ++|++.|++|++||++..++...+...+.++.+|.
T Consensus 79 d~tIryLsl~dN----kylRYF~GH~~~V~sL~~sP~~d~-----FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfD 149 (311)
T KOG1446|consen 79 DDTIRYLSLHDN----KYLRYFPGHKKRVNSLSVSPKDDT-----FLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFD 149 (311)
T ss_pred CCceEEEEeecC----ceEEEcCCCCceEEEEEecCCCCe-----EEecccCCeEEeeEecCCCCceEEecCCCcceeEC
Confidence 456666666666 899999999999999999999988 99999999999999999999989988888999999
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCCCCcceEEEec-CCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCC
Q 024185 100 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG-GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP 178 (271)
Q Consensus 100 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 178 (271)
|+|-++|++...+.|++||++....+|+..+.+. +.....+.+.|||||++++.+...+.+++.|.-+|..+.++..+.
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~ 229 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP 229 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc
Confidence 9999999998888999999999988899988876 556789999999999999999999999999999999999988877
Q ss_pred CCC-ceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecC-CcceeEEEEEecCCcEEEEeCCeEEEEcCCCCC
Q 024185 179 SPN-TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIPNPSS 253 (271)
Q Consensus 179 ~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~v~iw~~~~~~ 253 (271)
... .-.+.+|+||++++++|+.||+|++|++++++.+..+.+ +.+++.++.|+|.-.++++++..+.+|=....+
T Consensus 230 ~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 230 NAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDEDA 306 (311)
T ss_pred CCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEeccccc
Confidence 653 225688999999999999999999999999999999988 688999999999999999999999999776543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=225.44 Aligned_cols=236 Identities=16% Similarity=0.235 Sum_probs=203.9
Q ss_pred eecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
.|....|+.+.+.|++.+|+...-..+ ..++.|+.+|.++.|++++.+ ++||+.+|.|++|+..-. .++.
T Consensus 105 tPeGRRLltgs~SGEFtLWNg~~fnFE----tilQaHDs~Vr~m~ws~~g~w-----miSgD~gG~iKyWqpnmn-nVk~ 174 (464)
T KOG0284|consen 105 TPEGRRLLTGSQSGEFTLWNGTSFNFE----TILQAHDSPVRTMKWSHNGTW-----MISGDKGGMIKYWQPNMN-NVKI 174 (464)
T ss_pred cCCCceeEeecccccEEEecCceeeHH----HHhhhhcccceeEEEccCCCE-----EEEcCCCceEEecccchh-hhHH
Confidence 455678889999999999887544222 236789999999999999999 999999999999998543 3444
Q ss_pred EecC---CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 88 LRLR---GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 88 ~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
++.| .+.+++|+|+...|+++++||+|+|||....+. ...+.+|.-.|.+++|+|...++++++.|..|++||
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke----e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE----ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch----hheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 4443 478899999999999999999999999988776 666789999999999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecC-CcEEEEeC--
Q 024185 165 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR-RAMFVAAS-- 241 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~-- 241 (271)
.++++++.++..|.+. |..+.|+|++++|++++.|..++++|+++.+.++.+++|...|+++.|+|- ..+|.+|+
T Consensus 251 prSg~cl~tlh~HKnt--Vl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNT--VLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD 328 (464)
T ss_pred CCCcchhhhhhhccce--EEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCC
Confidence 9999999999888876 999999999999999999999999999999999999999999999999994 55777776
Q ss_pred CeEEEEcCCCCCCCcCCC
Q 024185 242 SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 242 ~~v~iw~~~~~~~~~~~~ 259 (271)
|.|..|.+...+++....
T Consensus 329 gsvvh~~v~~~~p~~~i~ 346 (464)
T KOG0284|consen 329 GSVVHWVVGLEEPLGEIP 346 (464)
T ss_pred CceEEEeccccccccCCC
Confidence 889999998555554444
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=219.62 Aligned_cols=230 Identities=12% Similarity=0.139 Sum_probs=203.1
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG 92 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 92 (271)
-|+.+..+|.+..|+...+ ....|..|+++|..+.|+.+|.+ +++++.|+++.+||..++...+.+..|+
T Consensus 249 ~LatG~~~G~~riw~~~G~-----l~~tl~~HkgPI~slKWnk~G~y-----ilS~~vD~ttilwd~~~g~~~q~f~~~s 318 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNKDGN-----LISTLGQHKGPIFSLKWNKKGTY-----ILSGGVDGTTILWDAHTGTVKQQFEFHS 318 (524)
T ss_pred eEEEeecCcEEEEEecCch-----hhhhhhccCCceEEEEEcCCCCE-----EEeccCCccEEEEeccCceEEEeeeecc
Confidence 3555666788877765433 44568899999999999999999 9999999999999999999999999998
Q ss_pred cce--EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 93 RPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 93 ~~~--~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
.+. +.|-. ...+++++.|+.|+++.+..... ..++.+|.++|.++.|+|.|.+|++++.|++++||+......
T Consensus 319 ~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P----~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 319 APALDVDWQS-NDEFATSSTDGCIHVCKVGEDRP----VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS 393 (524)
T ss_pred CCccceEEec-CceEeecCCCceEEEEEecCCCc----ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc
Confidence 764 77754 44589999999999999987765 667778999999999999999999999999999999988888
Q ss_pred EEEeecCCCCCceeeEEECCCC---------CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 171 RCGFSLEPSPNTNTEATFTPDG---------QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
...+..|... |..+.|+|+| ..+++++.|+++++||+..+.+++.+..|..+|.+++|+|+|+++|+|+
T Consensus 394 ~~~l~~Hske--i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 394 VHDLQAHSKE--IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred hhhhhhhccc--eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC
Confidence 8889888877 8889999865 3789999999999999999999999999999999999999999999999
Q ss_pred --CeEEEEcCCCCCCCcCCC
Q 024185 242 --SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 242 --~~v~iw~~~~~~~~~~~~ 259 (271)
|.|.+|+++++++.+...
T Consensus 472 ~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred CCCeeEeccccchheeEeec
Confidence 889999999998876554
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=215.57 Aligned_cols=212 Identities=15% Similarity=0.145 Sum_probs=197.6
Q ss_pred EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCe
Q 024185 36 MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGA 113 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~ 113 (271)
...+.+.+|.+-|.++++.|...+ |++|+.|++++|||+.+|+...++.+|- +..+++|+...|+++++.|+.
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~w-----f~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEW-----FATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ 216 (460)
T ss_pred eehhhhhhccceEEEEeeCCCcee-----EEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCe
Confidence 356678899999999999999999 9999999999999999999999999885 445999999999999999999
Q ss_pred EEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 114 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 114 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
|+.||++..+. +..+.+|-..|.|++.+|.-..|++++.|.++++||+++...+..+.+|..+ |.++.+.|-..
T Consensus 217 VKCwDLe~nkv----IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~--V~~V~~~~~dp 290 (460)
T KOG0285|consen 217 VKCWDLEYNKV----IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP--VASVMCQPTDP 290 (460)
T ss_pred eEEEechhhhh----HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc--ceeEEeecCCC
Confidence 99999999887 6678899999999999999999999999999999999999999999999987 99999998888
Q ss_pred EEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCCcCC
Q 024185 194 YVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 194 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~~~~ 258 (271)
.+++|+.|++|++||++.|+...++..|...|.+++.+|....+|+++ ..++-|++..+....-.
T Consensus 291 qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nl 356 (460)
T KOG0285|consen 291 QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNL 356 (460)
T ss_pred ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcc
Confidence 899999999999999999999999999999999999999999999999 88999999988776553
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=232.70 Aligned_cols=208 Identities=17% Similarity=0.252 Sum_probs=186.3
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-------------------------------eeEEEe
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-------------------------------FQGILR 89 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------------------------------~~~~~~ 89 (271)
+......++|..|++++.. +|.|-.|..|++|.+...+ ...++-
T Consensus 374 ~~nt~~~v~ca~fSddssm-----lA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSM-----LACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEcCCcceeEeecCCcch-----hhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 3344567889999999998 8899999999999886311 123356
Q ss_pred cCCcc--eEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC
Q 024185 90 LRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 90 ~~~~~--~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 167 (271)
+|..+ .+.|+|+.++|++++.|+++++|.+.+... ...+.+|..+|.++.|+|.|-++|+++.|++.++|....
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~----~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC----LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH 524 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeeccccee----EEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence 66544 499999999999999999999999999887 777889999999999999999999999999999999999
Q ss_pred CeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEE
Q 024185 168 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLS 245 (271)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~ 245 (271)
.++++.+.+|-.. +.|+.|+|+++|+++|+.|.++++||+.+|..++.|.||.++|.+++|||+|++|++|+ +.|+
T Consensus 525 ~~PlRifaghlsD--V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 525 NKPLRIFAGHLSD--VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred CCchhhhcccccc--cceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEE
Confidence 9999999999877 88999999999999999999999999999999999999999999999999999999998 8899
Q ss_pred EEcCCCCCCCcCCC
Q 024185 246 FWIPNPSSNSTDES 259 (271)
Q Consensus 246 iw~~~~~~~~~~~~ 259 (271)
+||+.++++.....
T Consensus 603 iWDl~~~~~v~~l~ 616 (707)
T KOG0263|consen 603 IWDLANGSLVKQLK 616 (707)
T ss_pred EEEcCCCcchhhhh
Confidence 99999988776554
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=230.95 Aligned_cols=236 Identities=17% Similarity=0.221 Sum_probs=199.8
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEe-cCcceeEEEec
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVL-MLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~ 90 (271)
..+..+..++.+..+....... ...+.+.+|...|..++|+|++++ +++++.|+++++||+ +.+..++++.+
T Consensus 172 ~~l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~~~-----l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 172 RALAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDGSY-----LLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred CeEEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCCcE-----EEEecCCceEEEeeccCCCeEEEEecC
Confidence 4455555677777777644421 244556889999999999999998 899999999999999 55688999999
Q ss_pred CC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC
Q 024185 91 RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 168 (271)
Q Consensus 91 ~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 168 (271)
|. +.+++|+|+++++++|+.|++|++||+++++. ...+.+|.+.|++++|++++++|++++.|+.|++||+.++
T Consensus 245 H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~----~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 245 HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC----VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETG 320 (456)
T ss_pred CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE----EEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCC
Confidence 96 56799999999999999999999999999876 7788999999999999999999999999999999999999
Q ss_pred e--EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcce---eEEEEEecCCcEEEEeC--
Q 024185 169 E--KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV---VACLKWAPRRAMFVAAS-- 241 (271)
Q Consensus 169 ~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~-- 241 (271)
. +...+..+.....+++++|+|+++++++++.|+.+++||+..++.+..+.+|... +.+...++.+.++++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d 400 (456)
T KOG0266|consen 321 SKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSED 400 (456)
T ss_pred ceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCC
Confidence 8 4556655544325899999999999999999999999999999999999888764 44555678899999998
Q ss_pred CeEEEEcCCCCCCCcCC
Q 024185 242 SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 242 ~~v~iw~~~~~~~~~~~ 258 (271)
+.|.+|++.++......
T Consensus 401 ~~v~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 401 GSVYVWDSSSGGILQRL 417 (456)
T ss_pred ceEEEEeCCccchhhhh
Confidence 88999999986654443
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=224.15 Aligned_cols=230 Identities=15% Similarity=0.241 Sum_probs=198.1
Q ss_pred eeecceeEEeeec-ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee
Q 024185 7 ALPITQALLFARQ-NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ 85 (271)
Q Consensus 7 ~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 85 (271)
-+|...+|++... ++.+.+|+.+.. ...++.|.+|..+|..+.|+++|.. |+|++.|+.+++||+++|+++
T Consensus 222 ~fp~~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g~~-----fLS~sfD~~lKlwDtETG~~~ 293 (503)
T KOG0282|consen 222 WFPKKGHLLLSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCGTS-----FLSASFDRFLKLWDTETGQVL 293 (503)
T ss_pred hccceeeEEEecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccCCe-----eeeeecceeeeeeccccceEE
Confidence 3466677777754 889999998872 3677889999999999999999998 999999999999999999999
Q ss_pred EEEecCC-cceEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEE
Q 024185 86 GILRLRG-RPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 163 (271)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~ 163 (271)
..+.... ..|+.|+|++ +.+++|+.|+.|+.||+++++. ...+..|-+.|..+.|-++|+++++++.|+++++|
T Consensus 294 ~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv----vqeYd~hLg~i~~i~F~~~g~rFissSDdks~riW 369 (503)
T KOG0282|consen 294 SRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV----VQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIW 369 (503)
T ss_pred EEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH----HHHHHhhhhheeeeEEccCCceEeeeccCccEEEE
Confidence 9998765 5779999998 8899999999999999999986 55677889999999999999999999999999999
Q ss_pred ECCCCeEE----------------------------------------------EEeecCCCCCceeeEEECCCCCEEEE
Q 024185 164 DAYGGEKR----------------------------------------------CGFSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 164 d~~~~~~~----------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
+.+.+-.+ ..+.+|...+.-..+.|||||.+|++
T Consensus 370 e~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~S 449 (503)
T KOG0282|consen 370 ENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCS 449 (503)
T ss_pred EcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEe
Confidence 97643211 11223333455667899999999999
Q ss_pred ecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCC-cEEEEeC--CeEEEEc
Q 024185 198 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWI 248 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~~v~iw~ 248 (271)
|..||.+.+||.++-+.+..+++|..++..+.|+|.. ..+|+|+ |.|++|+
T Consensus 450 GdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 450 GDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999999999999999975 4788887 9999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=228.48 Aligned_cols=206 Identities=18% Similarity=0.258 Sum_probs=184.0
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc--eeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS--FQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
.+...+.++.|+++|+. +++++.|+.+++|+..+.+ ..+.+.+|. +..++|+|+++++++++.|+++++||
T Consensus 157 ~~~~sv~~~~fs~~g~~-----l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRA-----LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred cccCceEEEEEcCCCCe-----EEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 34788999999999999 8899999999999997777 666666664 66799999999999999999999999
Q ss_pred CCCC-CCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEE
Q 024185 119 SRSY-DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 119 ~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
+... .. ...+.+|...|++++|+|+++++++|+.|++|++||++++++...+..|... |++++|+++++++++
T Consensus 232 ~~~~~~~----~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~--is~~~f~~d~~~l~s 305 (456)
T KOG0266|consen 232 LKDDGRN----LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG--ISGLAFSPDGNLLVS 305 (456)
T ss_pred ccCCCeE----EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCc--eEEEEECCCCCEEEE
Confidence 9444 43 6778899999999999999999999999999999999999999999999987 999999999999999
Q ss_pred ecCCCcEEEEEcCCce--eEEEecCCcce--eEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 198 GSGDGTLHAWNINTRN--EVACWNGNIGV--VACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~--~~~~~~~~~~~--v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
++.|+.|++||+.++. +...+.++... ++++.|+|++.+++++. +.+++||+..++......
T Consensus 306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~ 373 (456)
T KOG0266|consen 306 ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT 373 (456)
T ss_pred cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec
Confidence 9999999999999999 56777666554 99999999999999998 689999999887766554
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-32 Score=195.03 Aligned_cols=205 Identities=14% Similarity=0.144 Sum_probs=177.1
Q ss_pred EEEEcccccceEEeeEEecC-CchhhhhhhhhhccCceEEEEEecCc---ceeEEE-ecC--CcceEEEcCCCCEEEEEe
Q 024185 37 IIEFFATSKGIRRGLFLSAC-LQLMIALCLVLLTTALEYGIFVLMLA---SFQGIL-RLR--GRPTVAFDQQGLVFAVAM 109 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~-~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~-~~~--~~~~~~~~~~~~~l~~~~ 109 (271)
..+.+++|++++..++++|. |.. |++++.|+.|++|+...+ .+...+ .+| .+..++|+|.|++|++++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~i-----lAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS 80 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVI-----LASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS 80 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceE-----EEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee
Confidence 34557899999999999998 776 889999999999999743 233333 233 467799999999999999
Q ss_pred cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC---eEEEEeecCCCCCceeeE
Q 024185 110 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG---EKRCGFSLEPSPNTNTEA 186 (271)
Q Consensus 110 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~~v~~~ 186 (271)
-|.++.||.-..++- .....+.||...|.|++|+++|++||++++|+.|.+|....+ ++...++.|.+. |..+
T Consensus 81 FD~t~~Iw~k~~~ef--ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD--VK~V 156 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEF--ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD--VKHV 156 (312)
T ss_pred ccceEEEeecCCCce--eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc--ccEE
Confidence 999999999876654 236678899999999999999999999999999999998743 567778888877 8889
Q ss_pred EECCCCCEEEEecCCCcEEEEEcC---CceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNIN---TRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
.|+|...+|++++.|++|++|+-. ...+.+++.+|...|.+++|+|.|..|++++ ++++||...
T Consensus 157 ~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 157 IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred EEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 999999999999999999999866 4578999999999999999999999999998 889999854
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=192.02 Aligned_cols=223 Identities=14% Similarity=0.183 Sum_probs=189.1
Q ss_pred EEeee-cceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc--eeEEEec
Q 024185 14 LLFAR-QNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS--FQGILRL 90 (271)
Q Consensus 14 l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~ 90 (271)
+|... -+-.+..++..+| ...+.+++.++.|+.+.+.|+++. |++++ .-.||+||++++. ++.++.+
T Consensus 12 iLvsA~YDhTIRfWqa~tG----~C~rTiqh~dsqVNrLeiTpdk~~-----LAaa~-~qhvRlyD~~S~np~Pv~t~e~ 81 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTG----ICSRTIQHPDSQVNRLEITPDKKD-----LAAAG-NQHVRLYDLNSNNPNPVATFEG 81 (311)
T ss_pred EEEeccCcceeeeeehhcC----eEEEEEecCccceeeEEEcCCcch-----hhhcc-CCeeEEEEccCCCCCceeEEec
Confidence 44443 3788889998888 666779999999999999999998 55544 5679999998765 6888988
Q ss_pred CC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC
Q 024185 91 RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 168 (271)
Q Consensus 91 ~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 168 (271)
|. +.++.|..+|+++++|++||+++|||++.... .. .-.|..+|+++..+|+...|+++..+|.|++||+.+.
T Consensus 82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~----qR-~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC----QR-NYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred cCCceEEEEEeecCeEEEecCCCceEEEEeccCccc----ch-hccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 84 66799999999999999999999999998654 22 2346799999999999999999999999999999988
Q ss_pred eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc------eeEEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 169 EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR------NEVACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
.+.+.+..... ..+.++...|||++++.+...|..++|++-+. +++..++.|.+.+..+.+|||+++|+++|
T Consensus 157 ~c~~~liPe~~-~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 157 SCTHELIPEDD-TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred ccccccCCCCC-cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 77666543333 56999999999999999999999999998653 35667889999999999999999999998
Q ss_pred -CeEEEEcCCCC
Q 024185 242 -SVLSFWIPNPS 252 (271)
Q Consensus 242 -~~v~iw~~~~~ 252 (271)
.+++||+.++.
T Consensus 236 dktv~iwn~~~~ 247 (311)
T KOG0315|consen 236 DKTVKIWNTDDF 247 (311)
T ss_pred CceEEEEecCCc
Confidence 78999999887
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=205.51 Aligned_cols=224 Identities=13% Similarity=0.133 Sum_probs=193.9
Q ss_pred eeEEeeec-ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFARQ-NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
.++++.++ +-.+.+++...- . ..++...+|+..+.+++|-|.|.+ ++|++.|.+|+.|++.++.+++++++
T Consensus 162 Gk~l~tcSsDl~~~LWd~~~~-~--~c~ks~~gh~h~vS~V~f~P~gd~-----ilS~srD~tik~We~~tg~cv~t~~~ 233 (406)
T KOG0295|consen 162 GKYLATCSSDLSAKLWDFDTF-F--RCIKSLIGHEHGVSSVFFLPLGDH-----ILSCSRDNTIKAWECDTGYCVKTFPG 233 (406)
T ss_pred ccEEEecCCccchhheeHHHH-H--HHHHHhcCcccceeeEEEEecCCe-----eeecccccceeEEecccceeEEeccC
Confidence 34444443 333445544332 1 122446789999999999999998 99999999999999999999999999
Q ss_pred CCcc--eEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC---------------CcEEEE
Q 024185 91 RGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---------------GKSMLL 153 (271)
Q Consensus 91 ~~~~--~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~ 153 (271)
|.-+ .++.+.||..+++++.|.++++|-..+++. ...+..|+-+|.|++|.|. ++++.+
T Consensus 234 h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~----k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s 309 (406)
T KOG0295|consen 234 HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQC----KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS 309 (406)
T ss_pred chHhEEEEEecCCeeEEEecCCCceEEEEEeccchh----hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe
Confidence 9754 489999999999999999999999999876 5556789999999999774 258999
Q ss_pred EecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecC
Q 024185 154 TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR 233 (271)
Q Consensus 154 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 233 (271)
++.|++|++||+.++.++.++.+|.+. |..++|+|.|+||+++.+|+++++||++++++++.+..|..-++++.|+.+
T Consensus 310 ~SrDktIk~wdv~tg~cL~tL~ghdnw--Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~ 387 (406)
T KOG0295|consen 310 GSRDKTIKIWDVSTGMCLFTLVGHDNW--VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKT 387 (406)
T ss_pred ecccceEEEEeccCCeEEEEEecccce--eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCC
Confidence 999999999999999999999999875 999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeC--CeEEEEcC
Q 024185 234 RAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 234 ~~~l~~~~--~~v~iw~~ 249 (271)
..++++|+ .++++|..
T Consensus 388 ~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 388 APYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CceEEeccccceeeeeec
Confidence 99999999 77999964
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=217.59 Aligned_cols=221 Identities=17% Similarity=0.220 Sum_probs=191.2
Q ss_pred EEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-
Q 024185 14 LLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG- 92 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~- 92 (271)
++-+..+|.+.+++..-... .....+|...|.+++|||+... |++++.||+|+|||....+....+.+|+
T Consensus 153 miSgD~gG~iKyWqpnmnnV----k~~~ahh~eaIRdlafSpnDsk-----F~t~SdDg~ikiWdf~~~kee~vL~GHgw 223 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNMNNV----KIIQAHHAEAIRDLAFSPNDSK-----FLTCSDDGTIKIWDFRMPKEERVLRGHGW 223 (464)
T ss_pred EEEcCCCceEEecccchhhh----HHhhHhhhhhhheeccCCCCce-----eEEecCCCeEEEEeccCCchhheeccCCC
Confidence 33344466666666544421 2224566699999999998888 8999999999999999888888888885
Q ss_pred -cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEE
Q 024185 93 -RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 171 (271)
Q Consensus 93 -~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~ 171 (271)
+.+++|+|....+++++.|..|++||.+++.+ ..++.+|+..|..+.|+|++++|+++|.|..++++|+++.+.+
T Consensus 224 dVksvdWHP~kgLiasgskDnlVKlWDprSg~c----l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 224 DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSC----LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred CcceeccCCccceeEEccCCceeEeecCCCcch----hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 78899999999999999999999999999998 7788899999999999999999999999999999999998889
Q ss_pred EEeecCCCCCceeeEEECCC-CCEEEEecCCCcEEEEEcCCceeEEEe-cCCcceeEEEEEecCCcEEEEeC--CeEEEE
Q 024185 172 CGFSLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFW 247 (271)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw 247 (271)
+++.+|... ++++.|+|- ..+|.+|+.||.|..|.+...+++..+ .+|...|++++|+|=|.+|++|+ .++++|
T Consensus 300 ~~~r~Hkkd--v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 300 FTYRGHKKD--VTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred HHhhcchhh--heeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeee
Confidence 999999887 999999995 557788999999999999866666655 57999999999999999999998 779999
Q ss_pred cC
Q 024185 248 IP 249 (271)
Q Consensus 248 ~~ 249 (271)
.-
T Consensus 378 ~r 379 (464)
T KOG0284|consen 378 TR 379 (464)
T ss_pred cc
Confidence 74
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=227.39 Aligned_cols=243 Identities=16% Similarity=0.187 Sum_probs=201.0
Q ss_pred Eeee--cceeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc
Q 024185 6 FALP--ITQALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA 82 (271)
Q Consensus 6 ~~~~--~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 82 (271)
.|+. .+.-++.+ ..+..+..|....+......+....+|++.+.+++++..+.-+ |++++.|+++++|++...
T Consensus 369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asf----fvsvS~D~tlK~W~l~~s 444 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASF----FVSVSQDCTLKLWDLPKS 444 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccE----EEEecCCceEEEecCCCc
Confidence 4444 33334444 3466777775533333334556678999999999997766543 789999999999999762
Q ss_pred ce---eEEE--------ecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEE
Q 024185 83 SF---QGIL--------RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM 151 (271)
Q Consensus 83 ~~---~~~~--------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 151 (271)
+. ...+ +...+++++++|+.+++|+|+.|.+.++|++++... ...+.+|+..|.|+.|+|..+.+
T Consensus 445 ~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l----~~vLsGH~RGvw~V~Fs~~dq~l 520 (775)
T KOG0319|consen 445 KETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRL----LGVLSGHTRGVWCVSFSKNDQLL 520 (775)
T ss_pred ccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceE----EEEeeCCccceEEEEecccccee
Confidence 21 1111 233689999999999999999999999999996665 77889999999999999999999
Q ss_pred EEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEe
Q 024185 152 LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA 231 (271)
Q Consensus 152 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 231 (271)
+++|.|++|+||.+.+..++.+|.+|... |..+.|-.+|+.|++++.||.|++|++++++++.++.+|...|++++.+
T Consensus 521 aT~SgD~TvKIW~is~fSClkT~eGH~~a--Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~ 598 (775)
T KOG0319|consen 521 ATCSGDKTVKIWSISTFSCLKTFEGHTSA--VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVS 598 (775)
T ss_pred EeccCCceEEEEEeccceeeeeecCccce--eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeec
Confidence 99999999999999999999999999976 9999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeC--CeEEEEcCCCCCCCcCC
Q 024185 232 PRRAMFVAAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 232 ~~~~~l~~~~--~~v~iw~~~~~~~~~~~ 258 (271)
|...++++|+ |.|.+|.=.+.....++
T Consensus 599 ~~~~~~~tgg~Dg~i~~wkD~Te~~~~ee 627 (775)
T KOG0319|consen 599 PLLDMFVTGGGDGRIIFWKDVTEEEQNEE 627 (775)
T ss_pred CccceeEecCCCeEEEEeecCcHHHHHHH
Confidence 9999999987 77999976665444443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=222.81 Aligned_cols=240 Identities=16% Similarity=0.230 Sum_probs=214.1
Q ss_pred EEEEEeeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC
Q 024185 2 VLIVFALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML 81 (271)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~ 81 (271)
+|..+.+|....++.+..+|++..++.... ..++..+.|++++..++.+||+.. +++|+.|.+|++||..-
T Consensus 415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~----~l~Eti~AHdgaIWsi~~~pD~~g-----~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 415 ILASKFVPGDRYIVLGTKNGELQVFDLASA----SLVETIRAHDGAIWSISLSPDNKG-----FVTGSADKTVKFWDFKL 485 (888)
T ss_pred EEEEEecCCCceEEEeccCCceEEEEeehh----hhhhhhhccccceeeeeecCCCCc-----eEEecCCcEEEEEeEEE
Confidence 566778899999999999999999999888 566668899999999999999999 99999999999999741
Q ss_pred -----ccee--------EEEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC
Q 024185 82 -----ASFQ--------GILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 147 (271)
Q Consensus 82 -----~~~~--------~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 147 (271)
+... ++++.. .+.|+++|||+++|+++--|.++++|-+.+.+. ...+.||.-+|.|+..|||
T Consensus 486 ~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF----flsLYGHkLPV~smDIS~D 561 (888)
T KOG0306|consen 486 VVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF----FLSLYGHKLPVLSMDISPD 561 (888)
T ss_pred EeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee----eeeecccccceeEEeccCC
Confidence 2211 222322 478899999999999999999999999998876 6778899999999999999
Q ss_pred CcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEE
Q 024185 148 GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVAC 227 (271)
Q Consensus 148 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 227 (271)
++.+++||.|.+|++|-+.=|.+-+.+-+|... |.++.|-|....+++++.|+.++-||-...+.++.+.+|...|++
T Consensus 562 SklivTgSADKnVKiWGLdFGDCHKS~fAHdDS--vm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~c 639 (888)
T KOG0306|consen 562 SKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS--VMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWC 639 (888)
T ss_pred cCeEEeccCCCceEEeccccchhhhhhhcccCc--eeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeee
Confidence 999999999999999999999999999888877 999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcEEEEeC--CeEEEEcCCCCCCCc
Q 024185 228 LKWAPRRAMFVAAS--SVLSFWIPNPSSNST 256 (271)
Q Consensus 228 ~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~ 256 (271)
++.+|+|.+++++| .+|++|......+.-
T Consensus 640 Lav~~~G~~vvs~shD~sIRlwE~tde~~~l 670 (888)
T KOG0306|consen 640 LAVSPNGSFVVSSSHDKSIRLWERTDEILIL 670 (888)
T ss_pred eEEcCCCCeEEeccCCceeEeeeccCcceee
Confidence 99999999999998 679999987654433
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=204.40 Aligned_cols=238 Identities=12% Similarity=0.155 Sum_probs=211.8
Q ss_pred EEeeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce
Q 024185 5 VFALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF 84 (271)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 84 (271)
+---|.++-+.-+..++.+.+++..++ .....+.+|...+..+++|+-..+ +.+++.|+.|+.||++..+.
T Consensus 157 vavdP~n~wf~tgs~DrtikIwDlatg----~LkltltGhi~~vr~vavS~rHpY-----lFs~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADRTIKIWDLATG----QLKLTLTGHIETVRGVAVSKRHPY-----LFSAGEDKQVKCWDLEYNKV 227 (460)
T ss_pred EeeCCCceeEEecCCCceeEEEEcccC----eEEEeecchhheeeeeeecccCce-----EEEecCCCeeEEEechhhhh
Confidence 334466677777788999999999999 444458999999999999999999 88999999999999999999
Q ss_pred eEEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEE
Q 024185 85 QGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 162 (271)
Q Consensus 85 ~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 162 (271)
++.+.+| ++.|++.+|.-+.|++|+.|.++++||+++... ...+.+|..+|..+.+.|-...+++|+.|++|++
T Consensus 228 IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~----V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrl 303 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS----VHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRL 303 (460)
T ss_pred HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce----EEEecCCCCcceeEEeecCCCceEEecCCceEEE
Confidence 9999888 688899999999999999999999999999876 8889999999999999997788999999999999
Q ss_pred EECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 163 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
||++.|+...++..|... +.+++.+|....+++++.| .|+-|++..+..++.+.+|.+-|++++...|+-++.-+.
T Consensus 304 WDl~agkt~~tlt~hkks--vral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dn 380 (460)
T KOG0285|consen 304 WDLRAGKTMITLTHHKKS--VRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDN 380 (460)
T ss_pred eeeccCceeEeeecccce--eeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCc
Confidence 999999998888888876 9999999999999999987 599999999999999999999999999988876555444
Q ss_pred CeEEEEcCCCCCCCcCC
Q 024185 242 SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 242 ~~v~iw~~~~~~~~~~~ 258 (271)
|.+.+||.+++..-...
T Consensus 381 g~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 381 GSIMFWDWKSGHNYQRG 397 (460)
T ss_pred eEEEEEecCcCcccccc
Confidence 88999999987654443
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=217.13 Aligned_cols=233 Identities=15% Similarity=0.173 Sum_probs=200.1
Q ss_pred eeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 7 ALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
..+.+..|+.+.++|...+++...- ..+..+.-....+..++++..|++++. -++.-|.+-+|++.+..-+-
T Consensus 273 fH~~t~~lvvgFssG~f~LyelP~f----~lih~LSis~~~I~t~~~N~tGDWiA~----g~~klgQLlVweWqsEsYVl 344 (893)
T KOG0291|consen 273 FHKGTNLLVVGFSSGEFGLYELPDF----NLIHSLSISDQKILTVSFNSTGDWIAF----GCSKLGQLLVWEWQSESYVL 344 (893)
T ss_pred ccCCceEEEEEecCCeeEEEecCCc----eEEEEeecccceeeEEEecccCCEEEE----cCCccceEEEEEeeccceee
Confidence 3455566777777777777665443 444556666678899999999999433 44556899999999888887
Q ss_pred EEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 87 ILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 87 ~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
..++| .+.+++++|||+++++|+.||.|++||...+-+ ..++..|+..|+.+.|+..|+.+++++-||+|+.||
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC----~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC----FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE----EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 77877 478899999999999999999999999998877 777889999999999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC-cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--
Q 024185 165 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG-TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-- 241 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 241 (271)
+...+..+++..... .+..+++.+|.|..+..|+.|. .|.+|++++|+.+..+.||.++|.+++|+|++..|+++|
T Consensus 421 lkRYrNfRTft~P~p-~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEP-IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD 499 (893)
T ss_pred ecccceeeeecCCCc-eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence 999999999886543 5678899999999999998885 699999999999999999999999999999999999999
Q ss_pred CeEEEEcCCCC
Q 024185 242 SVLSFWIPNPS 252 (271)
Q Consensus 242 ~~v~iw~~~~~ 252 (271)
.+|++||+-..
T Consensus 500 kTVRiW~if~s 510 (893)
T KOG0291|consen 500 KTVRIWDIFSS 510 (893)
T ss_pred ceEEEEEeecc
Confidence 88999998654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=216.27 Aligned_cols=237 Identities=14% Similarity=0.154 Sum_probs=213.6
Q ss_pred eecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
.|...-++.+.-+|.+.+|+..+. ..++.|+-.+-+|....|-+-.++ +++|+.|..|++|+..+++.+..
T Consensus 22 HPtePw~la~LynG~V~IWnyetq----tmVksfeV~~~PvRa~kfiaRknW-----iv~GsDD~~IrVfnynt~ekV~~ 92 (794)
T KOG0276|consen 22 HPTEPWILAALYNGDVQIWNYETQ----TMVKSFEVSEVPVRAAKFIARKNW-----IVTGSDDMQIRVFNYNTGEKVKT 92 (794)
T ss_pred CCCCceEEEeeecCeeEEEecccc----eeeeeeeecccchhhheeeeccce-----EEEecCCceEEEEecccceeeEE
Confidence 466677888888999999998777 566778888889999999998888 89999999999999999999999
Q ss_pred EecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEE
Q 024185 88 LRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 88 ~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d 164 (271)
|+.|. +.+++.+|...+++++++|-.|++||-+..= .....+.+|...|.+++|+| |.+.+++++-|++|++|.
T Consensus 93 FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w---a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWs 169 (794)
T KOG0276|consen 93 FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW---ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWS 169 (794)
T ss_pred eeccccceeeeeecCCCCeEEecCCccEEEEeeccCce---eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEE
Confidence 99997 6779999999999999999999999987542 34677889999999999999 778999999999999999
Q ss_pred CCCCeEEEEeecCCCCCceeeEEECCCC--CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 165 AYGGEKRCGFSLEPSPNTNTEATFTPDG--QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
+.+..+..++.+|... |.++++-|.| .+|++|++|.+++|||.++..++++++||...|+.+.|+|.-.++++||
T Consensus 170 lgs~~~nfTl~gHekG--VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsE 247 (794)
T KOG0276|consen 170 LGSPHPNFTLEGHEKG--VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSE 247 (794)
T ss_pred cCCCCCceeeeccccC--cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecC
Confidence 9999999999998877 9999997654 6999999999999999999999999999999999999999999999999
Q ss_pred -CeEEEEcCCCCCCCcCC
Q 024185 242 -SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 242 -~~v~iw~~~~~~~~~~~ 258 (271)
|+++||+..+.++....
T Consensus 248 DGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 248 DGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred CccEEEecCcceehhhhh
Confidence 99999999988776544
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=215.07 Aligned_cols=232 Identities=17% Similarity=0.196 Sum_probs=194.6
Q ss_pred eeEEeeecc-eeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFARQN-IILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
+-+.++++. |++..|+-... .++-..++|...+.+++++|||+. +++|+.||.|++||..++-+..+|..
T Consensus 320 DWiA~g~~klgQLlVweWqsE----sYVlKQQgH~~~i~~l~YSpDgq~-----iaTG~eDgKVKvWn~~SgfC~vTFte 390 (893)
T KOG0291|consen 320 DWIAFGCSKLGQLLVWEWQSE----SYVLKQQGHSDRITSLAYSPDGQL-----IATGAEDGKVKVWNTQSGFCFVTFTE 390 (893)
T ss_pred CEEEEcCCccceEEEEEeecc----ceeeeccccccceeeEEECCCCcE-----EEeccCCCcEEEEeccCceEEEEecc
Confidence 345556543 56777765555 444557899999999999999999 99999999999999999999999988
Q ss_pred CC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC-eEEEEECCC
Q 024185 91 RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-NIYVLDAYG 167 (271)
Q Consensus 91 ~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-~i~~~d~~~ 167 (271)
|. ++.+.|+..|+.+++++-||+|+.||+..... +..++.+ .+....|++..|.|..+.+|+.|. .|.+|++.+
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN--fRTft~P-~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT 467 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN--FRTFTSP-EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT 467 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccce--eeeecCC-CceeeeEEEEcCCCCEEEeeccceEEEEEEEeec
Confidence 84 67799999999999999999999999988775 4444432 335678999999999999998875 599999999
Q ss_pred CeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCce-eEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 168 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN-EVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
|+.+..+.+|.++ |.+++|+|++..|++++.|.+|++||+-... ...+++ +...+..++|+|||+-|+++. |.|
T Consensus 468 GqllDiLsGHEgP--Vs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqI 544 (893)
T KOG0291|consen 468 GQLLDILSGHEGP--VSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQI 544 (893)
T ss_pred CeeeehhcCCCCc--ceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceE
Confidence 9999999999987 9999999999999999999999999986543 344454 566789999999999999887 899
Q ss_pred EEEcCCCCCCCcCC
Q 024185 245 SFWIPNPSSNSTDE 258 (271)
Q Consensus 245 ~iw~~~~~~~~~~~ 258 (271)
.+||.+.+......
T Consensus 545 tf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 545 TFFDIKEAVQVGSI 558 (893)
T ss_pred EEEEhhhceeeccc
Confidence 99999887665433
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-30 Score=212.49 Aligned_cols=207 Identities=9% Similarity=0.073 Sum_probs=169.2
Q ss_pred EcccccceEEeeEEec-CCchhhhhhhhhhccCceEEEEEecCc-------ceeEEEecCC--cceEEEcCCC-CEEEEE
Q 024185 40 FFATSKGIRRGLFLSA-CLQLMIALCLVLLTTALEYGIFVLMLA-------SFQGILRLRG--RPTVAFDQQG-LVFAVA 108 (271)
Q Consensus 40 ~~~~~~~~v~~~~~s~-~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~--~~~~~~~~~~-~~l~~~ 108 (271)
.+.+|.+.|.++.|+| ++.. |++++.|++|++||+.++ .++..+.+|. +.+++|+|++ ++|+++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~-----LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSg 144 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQK-----LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASA 144 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCE-----EEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEE
Confidence 3678999999999999 6776 889999999999999765 2456777774 5679999986 699999
Q ss_pred ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEE
Q 024185 109 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 109 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~ 188 (271)
+.|+.|++||+++++. ...+.+|...|.+++|+|+|++|++++.|+.|++||+++++.+..+..|... ....+.|
T Consensus 145 s~DgtVrIWDl~tg~~----~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~-~~~~~~w 219 (493)
T PTZ00421 145 GADMVVNVWDVERGKA----VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA-KSQRCLW 219 (493)
T ss_pred eCCCEEEEEECCCCeE----EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC-cceEEEE
Confidence 9999999999998775 5667889999999999999999999999999999999999988888877653 2345789
Q ss_pred CCCCCEEEEec----CCCcEEEEEcCCce-eEEEecCC-cceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCCCc
Q 024185 189 TPDGQYVVSGS----GDGTLHAWNINTRN-EVACWNGN-IGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNST 256 (271)
Q Consensus 189 ~~~~~~l~~~~----~dg~i~iwd~~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~~~ 256 (271)
.+++..+++++ .|+.|++||+++.. ++.....+ ...+....|++++++|++++ +.|++||+.++++..
T Consensus 220 ~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 220 AKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred cCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 99888777654 47899999998754 34333323 34456677899999888765 679999999887543
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=194.52 Aligned_cols=205 Identities=13% Similarity=0.136 Sum_probs=179.6
Q ss_pred EEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec-CcceeEEEecCCcc--eEEEcCCCCEEEEEecCCeE
Q 024185 38 IEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM-LASFQGILRLRGRP--TVAFDQQGLVFAVAMEAGAI 114 (271)
Q Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~d~~i 114 (271)
+..+.+|++.|..+.|+|+|.. |++|+.|..|.+|+.. ..+....+++|... -+.|.+|++.+++++.|.++
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~-----~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v 114 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSC-----FASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTV 114 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCe-----EeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceE
Confidence 3457899999999999999998 9999999999999953 44556677788644 48999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEecCCccceEEEEEcCCC-cEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 115 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
+.||+++++. ....++|..-|..+.-+.-| .++.+++.|+++++||+|+...++++..... ++++.|.-++.
T Consensus 115 ~~wD~~tG~~----~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyq---ltAv~f~d~s~ 187 (338)
T KOG0265|consen 115 RGWDAETGKR----IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQ---LTAVGFKDTSD 187 (338)
T ss_pred EEEeccccee----eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccccee---EEEEEeccccc
Confidence 9999999998 88888999999988844434 4566788899999999999988888764443 89999999999
Q ss_pred EEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 194 YVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 194 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
.+.+|+-|+.|++||++.+...+.+.+|..+|+.+..+|+|.++.+-+ +++++||++....
T Consensus 188 qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 188 QVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred ceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC
Confidence 999999999999999999999999999999999999999999999998 8899999976543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=216.21 Aligned_cols=240 Identities=13% Similarity=0.097 Sum_probs=199.2
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc----e
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS----F 84 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~ 84 (271)
|-.+.+.++.....+.+++.... ....+.+|+..+.++....+|.+ |++|+.|.++++|.++++. +
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~-----~c~ii~GH~e~vlSL~~~~~g~l-----lat~sKD~svilWr~~~~~~~~~~ 403 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTS-----YCQIIPGHTEAVLSLDVWSSGDL-----LATGSKDKSVILWRLNNNCSKSLC 403 (775)
T ss_pred CccceEEEEeCCCceEEEecCCC-----ceEEEeCchhheeeeeecccCcE-----EEEecCCceEEEEEecCCcchhhh
Confidence 44467777776677777733322 23368999999999997777877 8999999999999885443 3
Q ss_pred eEEEecCC--cceEEEcCCC-CEEEEEecCCeEEEEeCCCCCCC-cceEE----EecCCccceEEEEEcCCCcEEEEEec
Q 024185 85 QGILRLRG--RPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKG-PFDTF----LVGGDTAEVCDIKFSNDGKSMLLTTT 156 (271)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~-~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~ 156 (271)
++...+|. +.+++++..+ .+|++++.|+++++|++...+.. +...+ ....|...|+|++.+|+.+++++||.
T Consensus 404 ~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq 483 (775)
T KOG0319|consen 404 VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ 483 (775)
T ss_pred hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc
Confidence 44455664 5668887655 68999999999999999763221 11112 34579999999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcE
Q 024185 157 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAM 236 (271)
Q Consensus 157 d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 236 (271)
|.+.++|+++..+...++.+|... +.++.|+|..+.++++|.|.+|+||.+.+..+++++.||...|..+.|-.+|+.
T Consensus 484 DktaKiW~le~~~l~~vLsGH~RG--vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~q 561 (775)
T KOG0319|consen 484 DKTAKIWDLEQLRLLGVLSGHTRG--VWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQ 561 (775)
T ss_pred ccceeeecccCceEEEEeeCCccc--eEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcE
Confidence 999999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeC--CeEEEEcCCCCCCCcCCCC
Q 024185 237 FVAAS--SVLSFWIPNPSSNSTDEST 260 (271)
Q Consensus 237 l~~~~--~~v~iw~~~~~~~~~~~~~ 260 (271)
|++++ |-+++|+++++.++...+.
T Consensus 562 liS~~adGliKlWnikt~eC~~tlD~ 587 (775)
T KOG0319|consen 562 LISAGADGLIKLWNIKTNECEMTLDA 587 (775)
T ss_pred EEeccCCCcEEEEeccchhhhhhhhh
Confidence 99997 8899999999998776653
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-29 Score=198.72 Aligned_cols=235 Identities=18% Similarity=0.251 Sum_probs=199.8
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++.+..++.+..++...+. ....+..|...+..+.++|+++. +++++.||.+++||+++++....+
T Consensus 19 ~~~~~l~~~~~~g~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~-----l~~~~~~~~i~i~~~~~~~~~~~~ 89 (289)
T cd00200 19 PDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHTGPVRDVAASADGTY-----LASGSSDKTIRLWDLETGECVRTL 89 (289)
T ss_pred CCCCEEEEeecCcEEEEEEeeCCC----cEEEEecCCcceeEEEECCCCCE-----EEEEcCCCeEEEEEcCcccceEEE
Confidence 344566666778999998877652 33446778888888999999977 788899999999999988888888
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
..+. +.++.|+++++++++++.++.+.+||+.+.+. ...+..|...+.+++|+|++.++++++.|+.+++||++
T Consensus 90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 90 TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC----LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165 (289)
T ss_pred eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE----EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence 7765 66799999988888888899999999987664 55566788999999999999988888889999999999
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
+++....+..+... +.++.|+|+++.+++++.++.+++||+++++.+..+..|...+.++.|+|++.++++++ +.+
T Consensus 166 ~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 243 (289)
T cd00200 166 TGKCVATLTGHTGE--VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTI 243 (289)
T ss_pred ccccceeEecCccc--cceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcE
Confidence 88888888766654 89999999999999999999999999999999998888988999999999999998886 889
Q ss_pred EEEcCCCCCCCcCC
Q 024185 245 SFWIPNPSSNSTDE 258 (271)
Q Consensus 245 ~iw~~~~~~~~~~~ 258 (271)
++|++.+++.....
T Consensus 244 ~i~~~~~~~~~~~~ 257 (289)
T cd00200 244 RVWDLRTGECVQTL 257 (289)
T ss_pred EEEEcCCceeEEEc
Confidence 99999876655443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-29 Score=198.17 Aligned_cols=225 Identities=22% Similarity=0.329 Sum_probs=192.3
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++.+..++.+..++...+ .....+..|...+.++.+++++.. +++++.|+.+++||+++++....+
T Consensus 61 ~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 61 ADGTYLASGSSDKTIRLWDLETG----ECVRTLTGHTSYVSSVAFSPDGRI-----LSSSSRDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred CCCCEEEEEcCCCeEEEEEcCcc----cceEEEeccCCcEEEEEEcCCCCE-----EEEecCCCeEEEEECCCcEEEEEe
Confidence 33345666677888888887765 333446678889999999999776 667777999999999988888888
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
..+. +.+++|+|+++++++++.++.+++||+++++. ...+..|...+.++.|+|+++.+++++.++.+++||++
T Consensus 132 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC----VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc----ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence 7665 67799999999888888899999999987765 44555788899999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
+++.+..+..+... +.++.|+|++.++++++.+|.+++||+.+++....+..|...|.+++|+|++++|++++ +.+
T Consensus 208 ~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 208 TGKCLGTLRGHENG--VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred CCceecchhhcCCc--eEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeE
Confidence 98888887666654 99999999999999888899999999999999999999999999999999999999987 789
Q ss_pred EEEc
Q 024185 245 SFWI 248 (271)
Q Consensus 245 ~iw~ 248 (271)
++|+
T Consensus 286 ~iw~ 289 (289)
T cd00200 286 RIWD 289 (289)
T ss_pred EecC
Confidence 9996
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.8e-30 Score=197.61 Aligned_cols=228 Identities=17% Similarity=0.231 Sum_probs=196.1
Q ss_pred Eeeecc---eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc
Q 024185 6 FALPIT---QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA 82 (271)
Q Consensus 6 ~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 82 (271)
|++.-+ ..++-+..++.+++++...+. ..+.|.-|....-.+.|-.+.. |++++.|+.|+++.+...
T Consensus 280 ~slKWnk~G~yilS~~vD~ttilwd~~~g~----~~q~f~~~s~~~lDVdW~~~~~------F~ts~td~~i~V~kv~~~ 349 (524)
T KOG0273|consen 280 FSLKWNKKGTYILSGGVDGTTILWDAHTGT----VKQQFEFHSAPALDVDWQSNDE------FATSSTDGCIHVCKVGED 349 (524)
T ss_pred EEEEEcCCCCEEEeccCCccEEEEeccCce----EEEeeeeccCCccceEEecCce------EeecCCCceEEEEEecCC
Confidence 444443 346666679999999998884 3344777887766688877766 679999999999999999
Q ss_pred ceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC---------cEE
Q 024185 83 SFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG---------KSM 151 (271)
Q Consensus 83 ~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l 151 (271)
.++.++.+|. +.++.|+|.+.+|++++.|++++||.+..... ...+.+|...|..+.|+|+| ..+
T Consensus 350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~----~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l 425 (524)
T KOG0273|consen 350 RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS----VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLML 425 (524)
T ss_pred CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc----hhhhhhhccceeeEeecCCCCccCCCcCCceE
Confidence 9999998884 67799999999999999999999999877665 66788999999999999975 368
Q ss_pred EEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEe
Q 024185 152 LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA 231 (271)
Q Consensus 152 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 231 (271)
++++.|++|++||+..+.++++|..|..+ |.+++|+|+|+++++|+.||.|++|+.++++..+...+. +.|..++|+
T Consensus 426 ~sas~dstV~lwdv~~gv~i~~f~kH~~p--VysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn 502 (524)
T KOG0273|consen 426 ASASFDSTVKLWDVESGVPIHTLMKHQEP--VYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWN 502 (524)
T ss_pred EEeecCCeEEEEEccCCceeEeeccCCCc--eEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEc
Confidence 99999999999999999999999889887 999999999999999999999999999999999999864 459999999
Q ss_pred cCCcEEEEe-C-CeEEEEcCC
Q 024185 232 PRRAMFVAA-S-SVLSFWIPN 250 (271)
Q Consensus 232 ~~~~~l~~~-~-~~v~iw~~~ 250 (271)
.+|.+|..+ + +.+.+-|++
T Consensus 503 ~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 503 AAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCCEEEEEecCCCceEEEec
Confidence 999887666 4 778887764
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-29 Score=222.21 Aligned_cols=224 Identities=12% Similarity=0.146 Sum_probs=184.8
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEec-CCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSA-CLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
...++.+..++.+.+|+...+ ..+..+.+|.+.|.+++|+| ++.. |++|+.||+|++||++++..+..+.
T Consensus 545 ~~~las~~~Dg~v~lWd~~~~----~~~~~~~~H~~~V~~l~~~p~~~~~-----L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVARS----QLVTEMKEHEKRVWSIDYSSADPTL-----LASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCC----eEEEEecCCCCCEEEEEEcCCCCCE-----EEEEcCCCEEEEEECCCCcEEEEEe
Confidence 345556667899999987766 45566889999999999997 6676 8899999999999999998888887
Q ss_pred cC-CcceEEEc-CCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC
Q 024185 90 LR-GRPTVAFD-QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 90 ~~-~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 167 (271)
.+ .+.++.|+ +++.+|++|+.||.|++||+++.+. ....+.+|...|.++.|. ++.++++++.|++|++||++.
T Consensus 616 ~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~---~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 616 TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL---PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc---cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence 65 35668884 5789999999999999999987652 134567899999999997 678899999999999999974
Q ss_pred C------eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEe-------------cCCcceeEEE
Q 024185 168 G------EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-------------NGNIGVVACL 228 (271)
Q Consensus 168 ~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~~~~~~v~~~ 228 (271)
+ +.+..+.+|... +..++|+|+++++++|+.|+.+++|+......+..+ ..|...|.++
T Consensus 692 ~~~~~~~~~l~~~~gh~~~--i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v 769 (793)
T PLN00181 692 SISGINETPLHSFMGHTNV--KNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSV 769 (793)
T ss_pred CccccCCcceEEEcCCCCC--eeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEE
Confidence 3 566778777765 788999999999999999999999998765443221 2345679999
Q ss_pred EEecCCcEEEEeC--CeEEEEcC
Q 024185 229 KWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 229 ~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
+|+|++..|++|+ |.|++|++
T Consensus 770 ~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 770 CWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEcCCCCeEEEecCCCcEEEEec
Confidence 9999999999998 89999986
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=198.05 Aligned_cols=236 Identities=15% Similarity=0.231 Sum_probs=187.3
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
...|.-+.++-..+++....... -.....+.+|...|.-+.||||.++ +++++.|..+.+||..+|.....+..
T Consensus 236 GkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdry-----LlaCg~~e~~~lwDv~tgd~~~~y~~ 309 (519)
T KOG0293|consen 236 GKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDRY-----LLACGFDEVLSLWDVDTGDLRHLYPS 309 (519)
T ss_pred CeeEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCCCe-----EEecCchHheeeccCCcchhhhhccc
Confidence 34455556677777777665433 3456678899999999999999999 88999999999999999998877754
Q ss_pred C---CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcce------EEE------------------------------
Q 024185 91 R---GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD------TFL------------------------------ 131 (271)
Q Consensus 91 ~---~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------~~~------------------------------ 131 (271)
. .+.+++|.|||..+++|+.|+.+..||+......... ...
T Consensus 310 ~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr 389 (519)
T KOG0293|consen 310 GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR 389 (519)
T ss_pred CcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh
Confidence 3 4677999999999999999999999998754320000 000
Q ss_pred -ecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECC-CCCEEEEecCCCcEEEEEc
Q 024185 132 -VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNI 209 (271)
Q Consensus 132 -~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 209 (271)
+.....+|+++..|.|++++++.-.+..+++||++..+.++.+.+|.....+..-||-- +..++++|++|+.|+||+.
T Consensus 390 ~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 390 GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEc
Confidence 00122567777788888877777778888889988888888888888776776677754 5589999999999999999
Q ss_pred CCceeEEEecCCcceeEEEEEecC-CcEEEEeC--CeEEEEcCCCC
Q 024185 210 NTRNEVACWNGNIGVVACLKWAPR-RAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~--~~v~iw~~~~~ 252 (271)
.+++++..+.||...|++++|+|. -.++|++| |+||||-+...
T Consensus 470 ~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 470 ISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred cCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999999999999995 45888888 99999987643
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-30 Score=182.06 Aligned_cols=227 Identities=19% Similarity=0.231 Sum_probs=197.2
Q ss_pred EEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-
Q 024185 14 LLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG- 92 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~- 92 (271)
.+...++..+.+|++..+ ..++.|.+|...|..++.+.|... |++|+.|..+.+||.++|+..+.+.+|.
T Consensus 32 ~ltcGsdrtvrLWNp~rg----~liktYsghG~EVlD~~~s~Dnsk-----f~s~GgDk~v~vwDV~TGkv~Rr~rgH~a 102 (307)
T KOG0316|consen 32 CLTCGSDRTVRLWNPLRG----ALIKTYSGHGHEVLDAALSSDNSK-----FASCGGDKAVQVWDVNTGKVDRRFRGHLA 102 (307)
T ss_pred EEEcCCCceEEeeccccc----ceeeeecCCCceeeeccccccccc-----cccCCCCceEEEEEcccCeeeeecccccc
Confidence 344456889999999988 778889999999999999999988 8999999999999999999999999995
Q ss_pred -cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEE----------ecCCc-------------------------
Q 024185 93 -RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL----------VGGDT------------------------- 136 (271)
Q Consensus 93 -~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~~~~------------------------- 136 (271)
++.++|+.+...+++|+.|..+++||.+....+|++.+. +..|.
T Consensus 103 qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~ 182 (307)
T KOG0316|consen 103 QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYF 182 (307)
T ss_pred eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhc
Confidence 677999999999999999999999999987766655332 22222
Q ss_pred -cceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeE
Q 024185 137 -AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 215 (271)
Q Consensus 137 -~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 215 (271)
.+|+|++|++|++..++++.|+++++.|-.+|+.+..+++|.+...-...+++.....+++|++||.+++||+...+.+
T Consensus 183 g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 183 GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceee
Confidence 6899999999999999999999999999999999999999988766677888888899999999999999999999999
Q ss_pred EEecCCcce-eEEEEEecCCcEEEEeC-CeEEEEcC
Q 024185 216 ACWNGNIGV-VACLKWAPRRAMFVAAS-SVLSFWIP 249 (271)
Q Consensus 216 ~~~~~~~~~-v~~~~~s~~~~~l~~~~-~~v~iw~~ 249 (271)
..++.+... |.+++++|.-.-|+++. +.+..|.-
T Consensus 263 sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~ 298 (307)
T KOG0316|consen 263 SKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWYQ 298 (307)
T ss_pred eeeccCCceeEEeeecccCccceeEecCCceeceee
Confidence 999888777 89999999877666665 66777753
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=187.52 Aligned_cols=228 Identities=14% Similarity=0.169 Sum_probs=197.8
Q ss_pred eeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 7 ALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
-++..+.++-+..+..+..|+...| ...+.+++|.+.++.+.-+.-|..+ +.|++.||++++||+++...++
T Consensus 98 ~~~d~s~i~S~gtDk~v~~wD~~tG----~~~rk~k~h~~~vNs~~p~rrg~~l----v~SgsdD~t~kl~D~R~k~~~~ 169 (338)
T KOG0265|consen 98 GMRDGSHILSCGTDKTVRGWDAETG----KRIRKHKGHTSFVNSLDPSRRGPQL----VCSGSDDGTLKLWDIRKKEAIK 169 (338)
T ss_pred eccCCCEEEEecCCceEEEEecccc----eeeehhccccceeeecCccccCCeE----EEecCCCceEEEEeecccchhh
Confidence 3445566777777999999999999 5566699999999999866666665 5599999999999999999988
Q ss_pred EEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEEC
Q 024185 87 ILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 165 (271)
+++.. ...++.|..++..+.+|+-|+.|++||++.... ...+.||.+.|+.+..+|+|.++.+-+.|.++++||.
T Consensus 170 t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~----~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~ 245 (338)
T KOG0265|consen 170 TFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG----LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDV 245 (338)
T ss_pred ccccceeEEEEEecccccceeeccccCceeeeccccCcc----eEEeecccCceeeEEeccCCCccccccccceEEEEEe
Confidence 88655 577899999999999999999999999998887 8889999999999999999999999999999999999
Q ss_pred CC----CeEEEEeecCCCC--CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEE
Q 024185 166 YG----GEKRCGFSLEPSP--NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA 239 (271)
Q Consensus 166 ~~----~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 239 (271)
+. .+++..+.++.+. -....++|+|+++++.+|+.|..+++||......+..+++|.+.|+++.|+|...+|.+
T Consensus 246 rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils 325 (338)
T KOG0265|consen 246 RPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILS 325 (338)
T ss_pred cccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEE
Confidence 74 3457777766554 33566899999999999999999999999999999999999999999999999999999
Q ss_pred eC--CeEEE
Q 024185 240 AS--SVLSF 246 (271)
Q Consensus 240 ~~--~~v~i 246 (271)
++ .+|.+
T Consensus 326 ~~sdk~i~l 334 (338)
T KOG0265|consen 326 CSSDKTIYL 334 (338)
T ss_pred eccCceeEe
Confidence 98 44544
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=187.44 Aligned_cols=226 Identities=13% Similarity=0.151 Sum_probs=192.9
Q ss_pred ceeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 11 TQALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 11 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
+..++.+ ..+....+|+...+. ..-.+.+|+..|.++.||.+|.+ ||+|+.+|.|++|...++.....+.
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge----~~~eltgHKDSVt~~~Fshdgtl-----LATGdmsG~v~v~~~stg~~~~~~~ 145 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGE----FAGELTGHKDSVTCCSFSHDGTL-----LATGDMSGKVLVFKVSTGGEQWKLD 145 (399)
T ss_pred CCceEEecCCCceEEEEEccCCc----ceeEecCCCCceEEEEEccCceE-----EEecCCCccEEEEEcccCceEEEee
Confidence 4455444 456777888888774 33348899999999999999999 9999999999999999999888884
Q ss_pred --cCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC
Q 024185 90 --LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 90 --~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 167 (271)
...+.-+.|+|.+..|++|+.||.+..|.+.+... ...+.+|..++++=.|.|+|+.++++..||+|++||+.+
T Consensus 146 ~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~----~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt 221 (399)
T KOG0296|consen 146 QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL----CKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT 221 (399)
T ss_pred cccCceEEEEecccccEEEeecCCCcEEEEECCCcce----eeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC
Confidence 44566699999999999999999999999988654 666789999999999999999999999999999999999
Q ss_pred CeEEEEeecCCC--------------------------------------------------------------------
Q 024185 168 GEKRCGFSLEPS-------------------------------------------------------------------- 179 (271)
Q Consensus 168 ~~~~~~~~~~~~-------------------------------------------------------------------- 179 (271)
++++.++....+
T Consensus 222 g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~ 301 (399)
T KOG0296|consen 222 GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLA 301 (399)
T ss_pred CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchh
Confidence 887776651100
Q ss_pred -------------------------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCC
Q 024185 180 -------------------------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR 234 (271)
Q Consensus 180 -------------------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 234 (271)
+..|..+.|-+ ..+|++++.+|.|+.||.++|+++.++.+|...|.+++++|+.
T Consensus 302 A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~ 380 (399)
T KOG0296|consen 302 ACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQK 380 (399)
T ss_pred hcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCC
Confidence 01466677777 6789999999999999999999999999999999999999999
Q ss_pred cEEEEeC--CeEEEEcCC
Q 024185 235 AMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 235 ~~l~~~~--~~v~iw~~~ 250 (271)
++++++| ++.+||+..
T Consensus 381 ~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 381 RLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cEEEEecCCCeEEEEecC
Confidence 9999998 789999764
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=215.04 Aligned_cols=238 Identities=16% Similarity=0.196 Sum_probs=207.5
Q ss_pred eeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 7 ALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
..|...-++.+.-+|.+..|+..-+ ..+..|..|+++|..+.|+|++.+ |+||+.|-.|++|+.++.+++.
T Consensus 17 FHP~rPwILtslHsG~IQlWDYRM~----tli~rFdeHdGpVRgv~FH~~qpl-----FVSGGDDykIkVWnYk~rrclf 87 (1202)
T KOG0292|consen 17 FHPKRPWILTSLHSGVIQLWDYRMG----TLIDRFDEHDGPVRGVDFHPTQPL-----FVSGGDDYKIKVWNYKTRRCLF 87 (1202)
T ss_pred cCCCCCEEEEeecCceeeeehhhhh----hHHhhhhccCCccceeeecCCCCe-----EEecCCccEEEEEecccceehh
Confidence 3466677888888999999998877 555569999999999999999999 9999999999999999999999
Q ss_pred EEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 87 ILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 87 ~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
++.+|- +..+.|++.-.+|+++++|.+|+||+.+++++ ...+.||...|.|.+|+|...+++++|-|.+|++||
T Consensus 88 tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~----iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWD 163 (1202)
T KOG0292|consen 88 TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC----IAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWD 163 (1202)
T ss_pred hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce----EEEEecCceEEEeeccCCccceEEEecccceEEEEe
Confidence 999995 56699999999999999999999999999987 778889999999999999999999999999999999
Q ss_pred CCCCe-----------------------------EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee-
Q 024185 165 AYGGE-----------------------------KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE- 214 (271)
Q Consensus 165 ~~~~~-----------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~- 214 (271)
+..-+ ..+.+.+|... |.-++|+|.-..+++|++|..|++|.+..-+.
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG--VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG--VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc--cceEEecCCcceEEecCCcceeeEEEeccccce
Confidence 75211 12234455544 88899999999999999999999999875443
Q ss_pred -EEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 215 -VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 215 -~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+.+..+|...|+++-|+|..+++++.| +.+++||++..+....+.
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence 456789999999999999999999998 889999999988776664
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-32 Score=202.49 Aligned_cols=231 Identities=13% Similarity=0.175 Sum_probs=191.9
Q ss_pred EEeeecc-eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc
Q 024185 5 VFALPIT-QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS 83 (271)
Q Consensus 5 ~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 83 (271)
||++-.. ++++-+..+..+..|+...- .....+.+|++.|.|+.+... . +++|+.|.+|++||.++++
T Consensus 200 VYClQYDD~kiVSGlrDnTikiWD~n~~----~c~~~L~GHtGSVLCLqyd~r--v-----iisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 200 VYCLQYDDEKIVSGLRDNTIKIWDKNSL----ECLKILTGHTGSVLCLQYDER--V-----IVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred eEEEEecchhhhcccccCceEEeccccH----HHHHhhhcCCCcEEeeeccce--E-----EEecCCCceEEEEeccCCc
Confidence 3444433 45556677888888887654 344558899999998887654 4 7899999999999999999
Q ss_pred eeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEE
Q 024185 84 FQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 163 (271)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~ 163 (271)
+++++-.|.-.++-+--++.++++++.|.++.+||+..... ......+.||...|..+.|+. +++++++.|.+|++|
T Consensus 269 ~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~-it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVW 345 (499)
T ss_pred hhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchH-HHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEE
Confidence 99999888766654444677999999999999999987652 222345779999999999874 699999999999999
Q ss_pred ECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--
Q 024185 164 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-- 241 (271)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 241 (271)
+..+++.++++.+|... |.|+.+ .|+++++|+.|.+|++||+..|.++..++||..-|.++.|. .+.+++|.
T Consensus 346 ~~st~efvRtl~gHkRG--IAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYD 419 (499)
T KOG0281|consen 346 STSTCEFVRTLNGHKRG--IACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYD 419 (499)
T ss_pred eccceeeehhhhccccc--ceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecccc
Confidence 99999999999999876 755554 68999999999999999999999999999999999999995 67899998
Q ss_pred CeEEEEcCCCCCCC
Q 024185 242 SVLSFWIPNPSSNS 255 (271)
Q Consensus 242 ~~v~iw~~~~~~~~ 255 (271)
|+|++||+..+...
T Consensus 420 GkikvWdl~aaldp 433 (499)
T KOG0281|consen 420 GKIKVWDLQAALDP 433 (499)
T ss_pred ceEEEEecccccCC
Confidence 99999999887654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=183.93 Aligned_cols=208 Identities=13% Similarity=0.144 Sum_probs=182.5
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcce--EEEcCCCCEEEEEecCCeE
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPT--VAFDQQGLVFAVAMEAGAI 114 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~~i 114 (271)
+.+.+..++++|..+.++.+|++ .++++.|.+|++|+...+.+++++.+|+... ++.+.|+..|++++.|..+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY-----~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNY-----CLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred hceeecccccceEEEEEccCCCE-----EEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceE
Confidence 45567889999999999999999 8899999999999999999999998886444 7788899999999999999
Q ss_pred EEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC--eEEEEeecCCCCCceeeEEECCCC
Q 024185 115 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRCGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~v~~~~~~~~~ 192 (271)
.+||+++++. ...+.+|.+.|..++|+.+...+++|+.|.++++||.++. ++++.+...... |.++..+ +
T Consensus 84 ~vwDV~TGkv----~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~--V~Si~v~--~ 155 (307)
T KOG0316|consen 84 QVWDVNTGKV----DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG--VSSIDVA--E 155 (307)
T ss_pred EEEEcccCee----eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc--eeEEEec--c
Confidence 9999999997 7788899999999999999999999999999999999764 566766655554 8777764 5
Q ss_pred CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 193 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
..+++|+.||+++.||++.|+.....-+ .+|++++|++|++..+.++ +++++-|-++++++....
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk 222 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK 222 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc
Confidence 6799999999999999999988776654 4799999999999888887 889999999998876554
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-29 Score=180.49 Aligned_cols=229 Identities=14% Similarity=0.181 Sum_probs=190.0
Q ss_pred eeEEeeec-ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFARQ-NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
..|+|.++ +.....|-..+| .++-.|.+|.++|.++...-+.+. +++|+.|.++++||.++|+.+.+++.
T Consensus 22 GDLlFscaKD~~~~vw~s~nG----erlGty~GHtGavW~~Did~~s~~-----liTGSAD~t~kLWDv~tGk~la~~k~ 92 (327)
T KOG0643|consen 22 GDLLFSCAKDSTPTVWYSLNG----ERLGTYDGHTGAVWCCDIDWDSKH-----LITGSADQTAKLWDVETGKQLATWKT 92 (327)
T ss_pred CcEEEEecCCCCceEEEecCC----ceeeeecCCCceEEEEEecCCcce-----eeeccccceeEEEEcCCCcEEEEeec
Confidence 45777765 667777777778 777789999999999999999998 89999999999999999999999987
Q ss_pred CC-cceEEEcCCCCEEEEEec-----CCeEEEEeCCCCCC---CcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEE
Q 024185 91 RG-RPTVAFDQQGLVFAVAME-----AGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 161 (271)
Q Consensus 91 ~~-~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 161 (271)
.. +..+.|+++|++++...+ .+.|.++|++.... .......+..+...++..-|.|-+++|++|..||.|.
T Consensus 93 ~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is 172 (327)
T KOG0643|consen 93 NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSIS 172 (327)
T ss_pred CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEE
Confidence 74 677999999998887753 46899999984331 0011445566778999999999999999999999999
Q ss_pred EEECCCCeE-EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEe----------------------
Q 024185 162 VLDAYGGEK-RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW---------------------- 218 (271)
Q Consensus 162 ~~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------------------- 218 (271)
.||+++++. +..-..|... |+.++++||..++++++.|.+-++||+.+.+.++++
T Consensus 173 ~~da~~g~~~v~s~~~h~~~--Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgG 250 (327)
T KOG0643|consen 173 IYDARTGKELVDSDEEHSSK--INDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGG 250 (327)
T ss_pred EEEcccCceeeechhhhccc--cccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecC
Confidence 999999854 4445566654 999999999999999999999999999876654432
Q ss_pred ---------------------------------cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 219 ---------------------------------NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 219 ---------------------------------~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
++|-++|++++|+|+|+..++|+ |.|++...+.
T Consensus 251 GqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 251 GQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 37889999999999999999998 8888876654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=204.77 Aligned_cols=217 Identities=15% Similarity=0.168 Sum_probs=191.1
Q ss_pred cceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc-ceeEEE
Q 024185 10 ITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA-SFQGIL 88 (271)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~ 88 (271)
..+-++.+..++.+..++..+. ..+..|+.|.+-+.+++.+|..++ +++++.|-+|++||.+.+ .+.+++
T Consensus 66 RknWiv~GsDD~~IrVfnynt~----ekV~~FeAH~DyIR~iavHPt~P~-----vLtsSDDm~iKlW~we~~wa~~qtf 136 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYNTG----EKVKTFEAHSDYIRSIAVHPTLPY-----VLTSSDDMTIKLWDWENEWACEQTF 136 (794)
T ss_pred ccceEEEecCCceEEEEecccc----eeeEEeeccccceeeeeecCCCCe-----EEecCCccEEEEeeccCceeeeeEE
Confidence 3356777888999999988887 677889999999999999999999 899999999999999865 578889
Q ss_pred ecCCc--ceEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC--CcEEEEEecCCeEEEE
Q 024185 89 RLRGR--PTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVL 163 (271)
Q Consensus 89 ~~~~~--~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~ 163 (271)
++|.. ..++|+| |.+.+++++-|++|++|.+..... .+++++|...|.|+.|-+. ..+|++|+.|.++++|
T Consensus 137 eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~----nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvW 212 (794)
T KOG0276|consen 137 EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP----NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVW 212 (794)
T ss_pred cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC----ceeeeccccCcceEEeccCCCcceEEecCCCceEEEe
Confidence 99974 5589999 567999999999999999988776 8889999999999999884 4699999999999999
Q ss_pred ECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 164 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
|..+.++++++.+|.+. |..++|+|.=..+++|++||+++||+-.+-+...++.-....+++++-.+.++.++.|.
T Consensus 213 DyQtk~CV~TLeGHt~N--vs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 213 DYQTKSCVQTLEGHTNN--VSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred ecchHHHHHHhhccccc--ceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence 99999999999999987 99999999999999999999999999888777776665567788888777777777765
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-28 Score=174.78 Aligned_cols=238 Identities=16% Similarity=0.169 Sum_probs=183.5
Q ss_pred EEEeeecceeEEeee-cceeeEEEEeecc-ceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC
Q 024185 4 IVFALPITQALLFAR-QNIILILLESLCG-IYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML 81 (271)
Q Consensus 4 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~ 81 (271)
++.-.|....++..+ .+..+..++...+ .+.+.. ..-.+|+..|..++|+|.|++ |++++.|.++.||.-..
T Consensus 19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~-vld~~hkrsVRsvAwsp~g~~-----La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKT-VLDDGHKRSVRSVAWSPHGRY-----LASASFDATVVIWKKED 92 (312)
T ss_pred EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEE-eccccchheeeeeeecCCCcE-----EEEeeccceEEEeecCC
Confidence 344444433355554 4666677766532 222221 123579999999999999998 99999999999998765
Q ss_pred c--ceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC
Q 024185 82 A--SFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN 157 (271)
Q Consensus 82 ~--~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 157 (271)
+ +++.++++|+ +.+++|+++|++||+++.|..|-||.+..+.. .-....+..|...|..+.|+|...+|++++.|
T Consensus 93 ~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYD 171 (312)
T KOG0645|consen 93 GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYD 171 (312)
T ss_pred CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-EEEEeeeccccccccEEEEcCCcceeEEeccC
Confidence 4 5788899985 67799999999999999999999999985542 22345688999999999999999999999999
Q ss_pred CeEEEEECC---CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC-------cee-------------
Q 024185 158 NNIYVLDAY---GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-------RNE------------- 214 (271)
Q Consensus 158 ~~i~~~d~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~------------- 214 (271)
.+|++|+-. ..++.+++.+|... |.+++|+|.|..|++++.|++++||-..+ ++.
T Consensus 172 nTIk~~~~~~dddW~c~~tl~g~~~T--VW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ 249 (312)
T KOG0645|consen 172 NTIKVYRDEDDDDWECVQTLDGHENT--VWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASG 249 (312)
T ss_pred CeEEEEeecCCCCeeEEEEecCccce--EEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeecccceEec
Confidence 999999865 34678888888765 99999999999999999999999997321 111
Q ss_pred -----EEEe------------------cCCcceeEEEEEecC-CcEEEEeC--CeEEEEcCC
Q 024185 215 -----VACW------------------NGNIGVVACLKWAPR-RAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 215 -----~~~~------------------~~~~~~v~~~~~s~~-~~~l~~~~--~~v~iw~~~ 250 (271)
+..+ ..|...|+++.|.|. .++|++++ |.+++|.+.
T Consensus 250 ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 250 GGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 0000 246678899999994 56777776 889999764
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=186.86 Aligned_cols=226 Identities=16% Similarity=0.286 Sum_probs=190.6
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec-CCcceE
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL-RGRPTV 96 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~ 96 (271)
+.++.-.+-+-.+|. -+-.|.+|+++|....+..+... .++++.|-+-++||.-+|..+..++. |-+..+
T Consensus 36 ~kd~~pmlr~g~tgd----wigtfeghkgavw~~~l~~na~~-----aasaaadftakvw~a~tgdelhsf~hkhivk~~ 106 (334)
T KOG0278|consen 36 SKDGKPMLRNGDTGD----WIGTFEGHKGAVWSATLNKNATR-----AASAAADFTAKVWDAVTGDELHSFEHKHIVKAV 106 (334)
T ss_pred ccCCCchhccCCCCC----cEEeeeccCcceeeeecCchhhh-----hhhhcccchhhhhhhhhhhhhhhhhhhheeeeE
Confidence 445555555555553 34559999999999999888777 78999999999999999999888865 456789
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeec
Q 024185 97 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL 176 (271)
Q Consensus 97 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 176 (271)
+|+.|.++|++|+.+..+++||++..+. +...+.+|.+.|..+-|....+.+++++.|++|++||.++++.++++..
T Consensus 107 af~~ds~~lltgg~ekllrvfdln~p~A---pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~ 183 (334)
T KOG0278|consen 107 AFSQDSNYLLTGGQEKLLRVFDLNRPKA---PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF 183 (334)
T ss_pred EecccchhhhccchHHHhhhhhccCCCC---CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec
Confidence 9999999999999999999999998775 3445679999999999999999999999999999999999988877654
Q ss_pred CCC-------------------------------------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEe-
Q 024185 177 EPS-------------------------------------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW- 218 (271)
Q Consensus 177 ~~~-------------------------------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~- 218 (271)
... +..|.+.+++|+...+++|++|..++.||..+++.+..+
T Consensus 184 ~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n 263 (334)
T KOG0278|consen 184 NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN 263 (334)
T ss_pred CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecc
Confidence 321 124666677888888889999999999999999998886
Q ss_pred cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 219 NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 219 ~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
++|.++|.|+.|+|||...++|| |+|++|.+..++..
T Consensus 264 kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 264 KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 89999999999999999999999 99999998776543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=202.81 Aligned_cols=207 Identities=10% Similarity=0.151 Sum_probs=160.0
Q ss_pred EEEEcccccceEEeeEEecC-CchhhhhhhhhhccCceEEEEEecCcc--------eeEEEecCC--cceEEEcCCCCE-
Q 024185 37 IIEFFATSKGIRRGLFLSAC-LQLMIALCLVLLTTALEYGIFVLMLAS--------FQGILRLRG--RPTVAFDQQGLV- 104 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~--~~~~~~~~~~~~- 104 (271)
.+..+.+|.+.|.+++|+|+ +.. |++|+.||+|++||+.++. ++..+.+|. +.+++|+|++..
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~l-----LASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~i 140 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEI-----LASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYI 140 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCE-----EEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeE
Confidence 45568899999999999997 566 8899999999999997642 234566664 667999999875
Q ss_pred EEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCc--
Q 024185 105 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT-- 182 (271)
Q Consensus 105 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-- 182 (271)
+++++.|+.|++||+++++. ...+. |...|.+++|+|+|++|++++.|+.|++||+++++.+..+..|.+...
T Consensus 141 LaSgS~DgtIrIWDl~tg~~----~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~ 215 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEKR----AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTK 215 (568)
T ss_pred EEEEeCCCeEEEEECCCCcE----EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeE
Confidence 57889999999999998774 34443 557899999999999999999999999999999999998888876411
Q ss_pred -eeeEEECCCCCEEEEecCCC----cEEEEEcCC-ceeEEEec--CCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 183 -NTEATFTPDGQYVVSGSGDG----TLHAWNINT-RNEVACWN--GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 183 -v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
+....|+++++++++++.|+ .|++||+++ ++++..+. .+.+.+......++|.++++|+ ++|++|++..+
T Consensus 216 ~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 216 NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 22234578999999887764 799999995 55665543 2333333333345588888885 88999999776
Q ss_pred C
Q 024185 253 S 253 (271)
Q Consensus 253 ~ 253 (271)
.
T Consensus 296 ~ 296 (568)
T PTZ00420 296 S 296 (568)
T ss_pred c
Confidence 4
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-31 Score=203.25 Aligned_cols=212 Identities=13% Similarity=0.143 Sum_probs=179.3
Q ss_pred EEEEEcccccceEEeeEEec-CCchhhhhhhhhhccCceEEEEEecC-cceeEEEecCC--cceEEEcCCCCEEEEEecC
Q 024185 36 MIIEFFATSKGIRRGLFLSA-CLQLMIALCLVLLTTALEYGIFVLML-ASFQGILRLRG--RPTVAFDQQGLVFAVAMEA 111 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~-~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d 111 (271)
..+..+.+|...|+++.|.| .+.+ |++++.|+.|+||++.. +++++++.+|. +..++|+++|..+.+++.|
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hL-----lLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHL-----LLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD 279 (503)
T ss_pred hheeeccCCccccchhhhccceeeE-----EEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence 45677899999999999999 6666 88999999999999876 88999999996 4559999999999999999
Q ss_pred CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC-cEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECC
Q 024185 112 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 190 (271)
Q Consensus 112 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 190 (271)
+.+++||+++++. ...+. ....++|+.|.||+ +.+++|+.|+.|+.||+++++.++.+..|-+. +..+.|-+
T Consensus 280 ~~lKlwDtETG~~----~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~--i~~i~F~~ 352 (503)
T KOG0282|consen 280 RFLKLWDTETGQV----LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA--ILDITFVD 352 (503)
T ss_pred eeeeeeccccceE----EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh--eeeeEEcc
Confidence 9999999999996 43332 23578999999988 88899999999999999999999888877765 99999999
Q ss_pred CCCEEEEecCCCcEEEEEcCCceeEE----------------------------------------------EecCCc--
Q 024185 191 DGQYVVSGSGDGTLHAWNINTRNEVA----------------------------------------------CWNGNI-- 222 (271)
Q Consensus 191 ~~~~l~~~~~dg~i~iwd~~~~~~~~----------------------------------------------~~~~~~-- 222 (271)
+|+++++.++|++++||+.+.+-.++ .+++|.
T Consensus 353 ~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 353 EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA 432 (503)
T ss_pred CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence 99999999999999999976543221 123443
Q ss_pred ceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 223 GVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+.-..+.|||||++|++|+ |.+.+||.++-++....+
T Consensus 433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk 471 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK 471 (503)
T ss_pred CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc
Confidence 3346789999999999998 889999999977766554
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=204.16 Aligned_cols=230 Identities=15% Similarity=0.167 Sum_probs=199.4
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEE-cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEF-FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
..+..+..+..+..++...+ ..+.. +.+|.+.+.++++...+.. +++|+.|.++++||..+|++...+.+
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~----~~i~~~l~GH~g~V~~l~~~~~~~~-----lvsgS~D~t~rvWd~~sg~C~~~l~g 289 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNG----YLILTRLVGHFGGVWGLAFPSGGDK-----LVSGSTDKTERVWDCSTGECTHSLQG 289 (537)
T ss_pred CeEEecCCCceeEEeecccc----eEEEeeccCCCCCceeEEEecCCCE-----EEEEecCCcEEeEecCCCcEEEEecC
Confidence 34445566677777877777 44444 9999999999999986666 88999999999999999999999999
Q ss_pred CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 91 RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
|.....+++-...++++|+.|.+|++|+++++.. ...+.+|.++|.++..+ +.++++|+.|++|++||..++++
T Consensus 290 h~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~----l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c 363 (537)
T KOG0274|consen 290 HTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGAC----LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC 363 (537)
T ss_pred CCceEEEEEccCceEeeccCCceEEEEeccCcce----EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee
Confidence 9877777777788899999999999999998886 66666799999999998 78999999999999999999999
Q ss_pred EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc-eeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEE
Q 024185 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFW 247 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw 247 (271)
++.+.+|... |.++.+.+. +.+++|+.|++|++||+++. +++.++.+|.+-+..+.+ .+++|++++ ++|++|
T Consensus 364 l~sl~gH~~~--V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~W 438 (537)
T KOG0274|consen 364 LKSLSGHTGR--VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLW 438 (537)
T ss_pred eeeecCCcce--EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEe
Confidence 9999998876 988888765 89999999999999999999 999999999998866655 577899888 899999
Q ss_pred cCCCCCCCcCCCCC
Q 024185 248 IPNPSSNSTDESTD 261 (271)
Q Consensus 248 ~~~~~~~~~~~~~~ 261 (271)
|.+++++....+..
T Consensus 439 D~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 439 DAEEGECLRTLEGR 452 (537)
T ss_pred ecccCceeeeeccC
Confidence 99999888776653
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-27 Score=210.91 Aligned_cols=231 Identities=13% Similarity=0.183 Sum_probs=182.4
Q ss_pred ecceeEEeeecceeeEEEEeeccceee----EEEEEcccccceEEeeEEecC-CchhhhhhhhhhccCceEEEEEecCcc
Q 024185 9 PITQALLFARQNIILILLESLCGIYQC----MIIEFFATSKGIRRGLFLSAC-LQLMIALCLVLLTTALEYGIFVLMLAS 83 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~ 83 (271)
|..+.++.+..++.+.+|+......+. .....+.+ ...+.+++|++. +.. +++++.||+|++||+.+++
T Consensus 493 ~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~-----las~~~Dg~v~lWd~~~~~ 566 (793)
T PLN00181 493 RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQ-----VASSNFEGVVQVWDVARSQ 566 (793)
T ss_pred CCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCE-----EEEEeCCCeEEEEECCCCe
Confidence 344556666778899888753211100 01111222 456788899875 455 7899999999999999999
Q ss_pred eeEEEecCC--cceEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEc-CCCcEEEEEecCCe
Q 024185 84 FQGILRLRG--RPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS-NDGKSMLLTTTNNN 159 (271)
Q Consensus 84 ~~~~~~~~~--~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d~~ 159 (271)
.+..+.+|. +.+++|+| ++.+|++|+.|+.|++||++++.. ...+..+ ..+.++.|+ +++.+|++|+.|+.
T Consensus 567 ~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~----~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~ 641 (793)
T PLN00181 567 LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS----IGTIKTK-ANICCVQFPSESGRSLAFGSADHK 641 (793)
T ss_pred EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE----EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCe
Confidence 888888875 66799997 789999999999999999988764 3444433 679999995 57999999999999
Q ss_pred EEEEECCCCe-EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC------ceeEEEecCCcceeEEEEEec
Q 024185 160 IYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT------RNEVACWNGNIGVVACLKWAP 232 (271)
Q Consensus 160 i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~~~~s~ 232 (271)
|++||+++++ ....+..|... |.++.|. ++.++++++.|+.|++||++. .+++..+.+|...+..++|+|
T Consensus 642 I~iwD~~~~~~~~~~~~~h~~~--V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~ 718 (793)
T PLN00181 642 VYYYDLRNPKLPLCTMIGHSKT--VSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV 718 (793)
T ss_pred EEEEECCCCCccceEecCCCCC--EEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC
Confidence 9999998765 45566667655 9999996 778999999999999999974 356788999999999999999
Q ss_pred CCcEEEEeC--CeEEEEcCCCCC
Q 024185 233 RRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 233 ~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
++.+|++|+ +.+++|+.....
T Consensus 719 ~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 719 SDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred CCCEEEEEeCCCEEEEEECCCCC
Confidence 999999998 889999976543
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=196.50 Aligned_cols=226 Identities=12% Similarity=0.094 Sum_probs=191.3
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEccc-ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFAT-SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
+..+.|.++..+|.+.+++.... ...+.+.+ |...|.+++|.. .. +.+|+.|+.|..+|++..+....
T Consensus 227 ~~G~~LavG~~~g~v~iwD~~~~----k~~~~~~~~h~~rvg~laW~~--~~-----lssGsr~~~I~~~dvR~~~~~~~ 295 (484)
T KOG0305|consen 227 PDGSHLAVGTSDGTVQIWDVKEQ----KKTRTLRGSHASRVGSLAWNS--SV-----LSSGSRDGKILNHDVRISQHVVS 295 (484)
T ss_pred CCCCEEEEeecCCeEEEEehhhc----cccccccCCcCceeEEEeccC--ce-----EEEecCCCcEEEEEEecchhhhh
Confidence 44578999999999999997766 44455777 999999999993 33 56999999999999998775544
Q ss_pred -EecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEe--cCCeEE
Q 024185 88 -LRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTT--TNNNIY 161 (271)
Q Consensus 88 -~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~--~d~~i~ 161 (271)
+.+|. +..++|++|++++|+|+.|+.+.|||....+. .+.+..|.+.|..++|+| ....||+|+ .|+.|+
T Consensus 296 ~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p----~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~ 371 (484)
T KOG0305|consen 296 TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP----KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIK 371 (484)
T ss_pred hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc----cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEE
Confidence 66664 55599999999999999999999999966554 677789999999999999 566788875 499999
Q ss_pred EEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec--CCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEE
Q 024185 162 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS--GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA 239 (271)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 239 (271)
+||..+++.+..+.... +|.++.|++..+-++++. .++.|.||+..+.+.+..+.+|...|..++++|||..+++
T Consensus 372 fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 372 FWNTNTGARIDSVDTGS---QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred EEEcCCCcEecccccCC---ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE
Confidence 99999999888765433 499999999987777653 3678999999999999999999999999999999999999
Q ss_pred eC--CeEEEEcCCCC
Q 024185 240 AS--SVLSFWIPNPS 252 (271)
Q Consensus 240 ~~--~~v~iw~~~~~ 252 (271)
|+ .++++|++-..
T Consensus 449 ~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 449 GAADETLRFWNLFDE 463 (484)
T ss_pred ecccCcEEeccccCC
Confidence 98 78999998764
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-28 Score=188.73 Aligned_cols=211 Identities=13% Similarity=0.195 Sum_probs=176.4
Q ss_pred EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee--EEEecC--CcceEEEcCCCCEEEEEecC
Q 024185 36 MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ--GILRLR--GRPTVAFDQQGLVFAVAMEA 111 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~--~~~~~~~~~~~~~l~~~~~d 111 (271)
.....|..|...++...+||.|-+ +++|...|+|||||....+.+ ..++.- .+.-++|++|+++|++.++.
T Consensus 50 ~~~~iYtEH~~~vtVAkySPsG~y-----iASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEG 124 (603)
T KOG0318|consen 50 ASVDIYTEHAHQVTVAKYSPSGFY-----IASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEG 124 (603)
T ss_pred cceeeeccccceeEEEEeCCCceE-----EeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecC
Confidence 445668999999999999999998 899999999999998664432 233332 34559999999999888643
Q ss_pred ----CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC-cEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeE
Q 024185 112 ----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA 186 (271)
Q Consensus 112 ----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~ 186 (271)
|.+.+||.-+ . .-.+.+|...|.+++|-|.. -+++++++|+.+.+|+-.-.+...++..|.. .|.++
T Consensus 125 rerfg~~F~~DSG~--S----vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk--FV~~V 196 (603)
T KOG0318|consen 125 RERFGHVFLWDSGN--S----VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSK--FVNCV 196 (603)
T ss_pred ccceeEEEEecCCC--c----cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccc--ceeeE
Confidence 4677888644 2 44567999999999999964 4689999999999999766666666666665 59999
Q ss_pred EECCCCCEEEEecCCCcEEEEEcCCceeEEEec---CCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN---GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
.|+|||+++++.+.||.+.+||-.+++.+..+. +|.+.|.+++|+||+..++++| .+++|||..+.++.++..
T Consensus 197 RysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~ 274 (603)
T KOG0318|consen 197 RYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWP 274 (603)
T ss_pred EECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEee
Confidence 999999999999999999999999999999997 8999999999999999999998 779999999998877654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=187.90 Aligned_cols=204 Identities=16% Similarity=0.198 Sum_probs=180.2
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCc--ceEEEcCCCCEEEEEecCCeEEEEeCCCCCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK 124 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 124 (271)
.+..+...|.... +++|+.|..+.++|...++.+.++++|.. ..+.++|+...+++++.|..|++|.......
T Consensus 221 gi~ald~~~s~~~-----ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 221 GITALDIIPSSSK-----ILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CeeEEeecCCCCc-----ceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence 4556777776455 77999999999999999999999999975 4489999999999999999999999877664
Q ss_pred CcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcE
Q 024185 125 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL 204 (271)
Q Consensus 125 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 204 (271)
......|..+|+.+..+|.|.||++++.|++..+.|.+++..+...........+++.+|+|||..+.+|..||.+
T Consensus 296 ----~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~v 371 (506)
T KOG0289|consen 296 ----PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVV 371 (506)
T ss_pred ----ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceE
Confidence 4456679999999999999999999999999999999999988877655454668999999999999999999999
Q ss_pred EEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 205 HAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 205 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+|||++++.....|++|.++|..++|+.+|.+|++++ +.|++||++..+......
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence 9999999999999999999999999999999999998 669999998877554443
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-29 Score=179.22 Aligned_cols=225 Identities=15% Similarity=0.160 Sum_probs=185.9
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
..++.+..+|.+.+++.... ...+..|+.|+..|.++.+++..+.. +++++.|++|++|+...++.++++.+|
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~---s~Pi~~~kEH~~EV~Svdwn~~~r~~----~ltsSWD~TiKLW~~~r~~Sv~Tf~gh 146 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMP---SKPIHKFKEHKREVYSVDWNTVRRRI----FLTSSWDGTIKLWDPNRPNSVQTFNGH 146 (311)
T ss_pred ceEEEEecCceEEEeccCCC---CcchhHHHhhhhheEEecccccccee----EEeeccCCceEeecCCCCcceEeecCC
Confidence 34555566899999995333 23567799999999999999977664 668899999999999999999999998
Q ss_pred C--cceEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCC
Q 024185 92 G--RPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 92 ~--~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~ 167 (271)
. +...+|+| ..+.+++++.|+.+++||++.... ...+..|...+.|+.|+. +...+++|+.|+.|+.||+++
T Consensus 147 ~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk----~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 147 NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK----FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc----eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence 7 45589999 468999999999999999987664 444778999999999998 677889999999999999987
Q ss_pred Ce-EEEEeecCCCCCceeeEEECCCC-CEEEEecCCCcEEEEEcCCce-eEEEecCCcceeEEEEEec-CCcEEEEeC--
Q 024185 168 GE-KRCGFSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRN-EVACWNGNIGVVACLKWAP-RRAMFVAAS-- 241 (271)
Q Consensus 168 ~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~-- 241 (271)
-+ ++..+.+|.-. |+.+.|||.. ..|++++.|=+++|||...+. .+.+...|..-+..+.||+ ++.++|+++
T Consensus 223 ~r~pl~eL~gh~~A--VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 223 LRTPLFELNGHGLA--VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWD 300 (311)
T ss_pred ccccceeecCCceE--EEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccc
Confidence 54 45666666654 9999999974 578899999999999998554 4556677888899999998 466899888
Q ss_pred CeEEEEcC
Q 024185 242 SVLSFWIP 249 (271)
Q Consensus 242 ~~v~iw~~ 249 (271)
+.++||+.
T Consensus 301 e~l~Vw~p 308 (311)
T KOG0277|consen 301 ELLYVWNP 308 (311)
T ss_pred cceeeecc
Confidence 78999985
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-28 Score=184.51 Aligned_cols=228 Identities=14% Similarity=0.173 Sum_probs=193.3
Q ss_pred cceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 10 ITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
..+.++.+..+..++.++...+ +.+..|.+|...+..+.++|+... +++++.|..|++|............
T Consensus 230 s~~~ilTGG~d~~av~~d~~s~----q~l~~~~Gh~kki~~v~~~~~~~~-----v~~aSad~~i~vws~~~~s~~~~~~ 300 (506)
T KOG0289|consen 230 SSSKILTGGEDKTAVLFDKPSN----QILATLKGHTKKITSVKFHKDLDT-----VITASADEIIRVWSVPLSSEPTSSR 300 (506)
T ss_pred CCCcceecCCCCceEEEecchh----hhhhhccCcceEEEEEEeccchhh-----eeecCCcceEEeeccccccCccccc
Confidence 3355666666777888877666 677889999999999999999988 8899999999999987777666666
Q ss_pred cCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC
Q 024185 90 LRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 90 ~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 167 (271)
.|. ++.+..+|.|.||++++.|++..+.|++++.. +....-+...-.+++.+|+|||-.|.+|..|+.+++||+.+
T Consensus 301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~--lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ--LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccceeeeeccCCcEEEEecCCceEEEEEccCCcE--EEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 665 55689999999999999999999999999885 22222222334589999999999999999999999999999
Q ss_pred CeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC-cceeEEEEEecCCcEEEEeCCeEEE
Q 024185 168 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAASSVLSF 246 (271)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~v~i 246 (271)
+..+..|.+|..+ |..++|+.+|-||+++++|+.|++||++..+..+++.-. ...+.++.|.+.|.+|+.++.+++|
T Consensus 379 ~~~~a~Fpght~~--vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 379 QTNVAKFPGHTGP--VKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred ccccccCCCCCCc--eeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 9999999998877 999999999999999999999999999988877776432 2369999999999999999988888
Q ss_pred EcCC
Q 024185 247 WIPN 250 (271)
Q Consensus 247 w~~~ 250 (271)
|-..
T Consensus 457 y~~~ 460 (506)
T KOG0289|consen 457 YICK 460 (506)
T ss_pred EEEe
Confidence 8776
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=172.39 Aligned_cols=234 Identities=15% Similarity=0.154 Sum_probs=192.0
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
.++.-+..+..+..++..... ...-..+.+|.+.+..++|+|...-. |++++.|.+|++||++.+++...+...
T Consensus 33 ~~lasgs~dktv~v~n~e~~r--~~~~~~~~gh~~svdql~w~~~~~d~----~atas~dk~ir~wd~r~~k~~~~i~~~ 106 (313)
T KOG1407|consen 33 TKLASGSFDKTVSVWNLERDR--FRKELVYRGHTDSVDQLCWDPKHPDL----FATASGDKTIRIWDIRSGKCTARIETK 106 (313)
T ss_pred ceeeecccCCceEEEEecchh--hhhhhcccCCCcchhhheeCCCCCcc----eEEecCCceEEEEEeccCcEEEEeecc
Confidence 455666667777666655441 11223367888888889998876554 779999999999999999999988777
Q ss_pred Ccce-EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 92 GRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 92 ~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
..+. +.|+|+|+++++++.|..|...|.++.+. . .-......+..+.|+.++.+++..+..|.|.|.....-++
T Consensus 107 ~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~----~-~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp 181 (313)
T KOG1407|consen 107 GENINITWSPDGEYIAVGNKDDRITFIDARTYKI----V-NEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKP 181 (313)
T ss_pred CcceEEEEcCCCCEEEEecCcccEEEEEecccce----e-ehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccc
Confidence 6555 99999999999999999999999998764 2 1122345688899998888888888889999999999999
Q ss_pred EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEc
Q 024185 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 248 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~ 248 (271)
+..++.|... +.|+.|+|+|+++|+|+.|..+.+||+...-+.+.+..+..+|..++||.||++||++| .-|-|=+
T Consensus 182 v~si~AH~sn--CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 182 VQSIKAHPSN--CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAE 259 (313)
T ss_pred ccccccCCcc--eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEe
Confidence 9999999866 89999999999999999999999999999999999999999999999999999999999 3366666
Q ss_pred CCCCCCCcCC
Q 024185 249 PNPSSNSTDE 258 (271)
Q Consensus 249 ~~~~~~~~~~ 258 (271)
.++|....+.
T Consensus 260 vetGd~~~eI 269 (313)
T KOG1407|consen 260 VETGDRVWEI 269 (313)
T ss_pred cccCCeEEEe
Confidence 6666554443
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-28 Score=173.93 Aligned_cols=223 Identities=16% Similarity=0.176 Sum_probs=177.5
Q ss_pred cceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec-CcceeEEEecCC--cce
Q 024185 19 QNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM-LASFQGILRLRG--RPT 95 (271)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~--~~~ 95 (271)
.+|.+.+++...+. .......|.. .+....++|++..... +++++.||++++||+. ...+++.++.|. +.+
T Consensus 36 G~G~L~ile~~~~~-gi~e~~s~d~-~D~LfdV~Wse~~e~~----~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~S 109 (311)
T KOG0277|consen 36 GNGRLFILEVTDPK-GIQECQSYDT-EDGLFDVAWSENHENQ----VIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYS 109 (311)
T ss_pred cCceEEEEecCCCC-CeEEEEeeec-ccceeEeeecCCCcce----EEEEecCceEEEeccCCCCcchhHHHhhhhheEE
Confidence 36788888875321 1122333443 3456779999987765 5689999999999964 345777887774 666
Q ss_pred EEEcCC-CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCCCeEEEE
Q 024185 96 VAFDQQ-GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCG 173 (271)
Q Consensus 96 ~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~ 173 (271)
+.|++- .+.+++++.|++|++|+...++. ..++.+|..-|...+|+| .++++++++.|+.+++||++.......
T Consensus 110 vdwn~~~r~~~ltsSWD~TiKLW~~~r~~S----v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~ 185 (311)
T KOG0277|consen 110 VDWNTVRRRIFLTSSWDGTIKLWDPNRPNS----VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS 185 (311)
T ss_pred eccccccceeEEeeccCCceEeecCCCCcc----eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE
Confidence 888874 45778889999999999987776 677889999999999999 688999999999999999987555555
Q ss_pred eecCCCCCceeeEEECC-CCCEEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEEEecCC-cEEEEeC--CeEEEEc
Q 024185 174 FSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWI 248 (271)
Q Consensus 174 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~~v~iw~ 248 (271)
+..|... +.++.|+. +.+.+++|+.|+.|+.||+++ ..++..+.+|.-.|..+.|||.. .+|++++ =+++|||
T Consensus 186 i~ah~~E--il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 186 IEAHNSE--ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWD 263 (311)
T ss_pred EEeccce--eEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecc
Confidence 8888855 99999986 566888999999999999987 45678889999999999999975 5788888 6799999
Q ss_pred CCCCC
Q 024185 249 PNPSS 253 (271)
Q Consensus 249 ~~~~~ 253 (271)
...+.
T Consensus 264 ~~~~d 268 (311)
T KOG0277|consen 264 PERQD 268 (311)
T ss_pred cccch
Confidence 98543
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=185.12 Aligned_cols=239 Identities=13% Similarity=0.163 Sum_probs=182.1
Q ss_pred eecceeEEee-ecceeeEEEEeeccceeeEEE------EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec
Q 024185 8 LPITQALLFA-RQNIILILLESLCGIYQCMII------EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM 80 (271)
Q Consensus 8 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~ 80 (271)
||-+..++.+ .+++.+.+++...-...+... -.+.+|++.-.+++|++..... +++++.|++|.+||+.
T Consensus 133 mPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~----Lls~~~d~~i~lwdi~ 208 (422)
T KOG0264|consen 133 MPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGT----LLSGSDDHTICLWDIN 208 (422)
T ss_pred CCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccccee----EeeccCCCcEEEEecc
Confidence 5556666654 557778887765432222111 1466777767779999877653 7899999999999996
Q ss_pred Ccc-------eeEEEecCC--cceEEEcCC-CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCc
Q 024185 81 LAS-------FQGILRLRG--RPTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGK 149 (271)
Q Consensus 81 ~~~-------~~~~~~~~~--~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 149 (271)
... +...+.+|+ +.-++|++- ...|++++.|+.+.|||+++++. .......+|.+++.|++|+| ++.
T Consensus 209 ~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~--~~~~~~~ah~~~vn~~~fnp~~~~ 286 (422)
T KOG0264|consen 209 AESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS--KPSHSVKAHSAEVNCVAFNPFNEF 286 (422)
T ss_pred ccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC--CCcccccccCCceeEEEeCCCCCc
Confidence 432 345567776 444999985 46888999999999999996422 22556779999999999999 667
Q ss_pred EEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECCC-CCEEEEecCCCcEEEEEcCCc--------------e
Q 024185 150 SMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAWNINTR--------------N 213 (271)
Q Consensus 150 ~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~--------------~ 213 (271)
.||+|+.|++|.+||+|+- +++.++..|... |.++.|+|. ...|++++.|+.+.+||+..- +
T Consensus 287 ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de--v~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE 364 (422)
T KOG0264|consen 287 ILATGSADKTVALWDLRNLNKPLHTFEGHEDE--VFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE 364 (422)
T ss_pred eEEeccCCCcEEEeechhcccCceeccCCCcc--eEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcc
Confidence 7889999999999999974 567888888877 999999997 457888999999999998641 2
Q ss_pred eEEEecCCcceeEEEEEecCCcEEEE-eC--CeEEEEcCCCCCC
Q 024185 214 EVACWNGNIGVVACLKWAPRRAMFVA-AS--SVLSFWIPNPSSN 254 (271)
Q Consensus 214 ~~~~~~~~~~~v~~~~~s~~~~~l~~-~~--~~v~iw~~~~~~~ 254 (271)
++..-.||.+.|..+.|+|+..++++ .+ +.+.||.+...-.
T Consensus 365 llF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i~ 408 (422)
T KOG0264|consen 365 LLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENIY 408 (422)
T ss_pred eeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccccc
Confidence 34555789999999999999886554 44 7899999975433
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=182.36 Aligned_cols=214 Identities=16% Similarity=0.192 Sum_probs=176.7
Q ss_pred EEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC------------c------ceeEEEecC--CcceEE
Q 024185 38 IEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML------------A------SFQGILRLR--GRPTVA 97 (271)
Q Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~------------~------~~~~~~~~~--~~~~~~ 97 (271)
..++..|++...+.+|+|||.+ +++|+.|..|+|.|.+. + ..++++-.| +++++.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~l-----vATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~ 179 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSL-----VATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD 179 (430)
T ss_pred eEEEeecccceeeeeeCCCCcE-----EEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee
Confidence 3456789999999999999999 99999999999999872 1 134455444 578899
Q ss_pred EcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEee-c
Q 024185 98 FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-L 176 (271)
Q Consensus 98 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~ 176 (271)
|+|....|++|+.|++|+++|...... ...+..-....+|.++.|+|.|.+|++|.....+++||+.+.++...-. .
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~sa--KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSA--KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHH--HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc
Confidence 999999999999999999999976443 1122222345689999999999999999999999999999988765433 2
Q ss_pred CCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEe-cCCc-ceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 177 EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-NGNI-GVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 177 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~-~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
.++...|+++.+++.+++.++++.||.|++||--+++++.++ .+|. ..|.+..|..+|+++++.+ ..+++|.+.++
T Consensus 258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 233366999999999999999999999999999999999887 4554 4789999999999999998 67999999998
Q ss_pred CCCcCC
Q 024185 253 SNSTDE 258 (271)
Q Consensus 253 ~~~~~~ 258 (271)
+.+.+.
T Consensus 338 R~l~~Y 343 (430)
T KOG0640|consen 338 RMLKEY 343 (430)
T ss_pred ceEEEE
Confidence 876544
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=178.90 Aligned_cols=211 Identities=15% Similarity=0.165 Sum_probs=180.3
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeE
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAI 114 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i 114 (271)
.+..|..|+..+.+++.+|+.++ +++|+.|..-.+|++.++.....+.+|. +.++.|+.+|.+||+|..+|.|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l-----~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v 130 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNL-----VATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKV 130 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCce-----EEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccE
Confidence 34568999999999999998887 8899999999999999999888998885 6779999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCE
Q 024185 115 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 194 (271)
++|+..++.. ...+...-..+.-+.|+|-+..|++|+.||.+.+|.+.++...+.+.+|..+ +++-.|.|+|+.
T Consensus 131 ~v~~~stg~~----~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~--ct~G~f~pdGKr 204 (399)
T KOG0296|consen 131 LVFKVSTGGE----QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP--CTCGEFIPDGKR 204 (399)
T ss_pred EEEEcccCce----EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC--cccccccCCCce
Confidence 9999999886 5555555677899999999999999999999999999998888889888876 889999999999
Q ss_pred EEEecCCCcEEEEEcCCceeEEEecCC-cceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCC
Q 024185 195 VVSGSGDGTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~ 258 (271)
++++..||+|++|+++++.++..+... .....++.++..+..++.|+ +.+++-+..+++.+.-.
T Consensus 205 ~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 205 ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence 999999999999999999999988532 23456777777777777776 55666666665554433
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-29 Score=189.29 Aligned_cols=201 Identities=18% Similarity=0.192 Sum_probs=173.5
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec----------CCcceEEEcCCCCEEEEEecCC
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL----------RGRPTVAFDQQGLVFAVAMEAG 112 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~d~ 112 (271)
+.+..+.|..|||||++ +++|+.||.|.+||.-+|+..+.++- ..+.|+.|+.|...+|+|+.||
T Consensus 211 g~KSh~EcA~FSPDgqy-----LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQY-----LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred ccccchhheeeCCCCce-----EeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 34567888999999999 99999999999999999886655422 2467899999999999999999
Q ss_pred eEEEEeCCCCCCCcceEEEec-CCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCC
Q 024185 113 AIKLFDSRSYDKGPFDTFLVG-GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 191 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 191 (271)
.|++|.++++.+ ...+. +|...|+|+.||.|+..+++++.|.++++.-+.+|+++..+.+|..- |+...|++|
T Consensus 286 kIKvWri~tG~C----lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy--vn~a~ft~d 359 (508)
T KOG0275|consen 286 KIKVWRIETGQC----LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY--VNEATFTDD 359 (508)
T ss_pred cEEEEEEecchH----HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccc--ccceEEcCC
Confidence 999999999987 44444 79999999999999999999999999999999999999999999875 999999999
Q ss_pred CCEEEEecCCCcEEEEEcCCceeEEEecC--CcceeEEEEEecC-CcEEEEeC--CeEEEEcCCCCCC
Q 024185 192 GQYVVSGSGDGTLHAWNINTRNEVACWNG--NIGVVACLKWAPR-RAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 192 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~-~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
|.++++++.||+|++|+.++.+++.+++. ...+|+++-.-|. ...++.|. +++.|-++...-.
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV 427 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV 427 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE
Confidence 99999999999999999999999998854 3457888887774 44666665 7898888866433
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=182.25 Aligned_cols=207 Identities=13% Similarity=0.178 Sum_probs=181.3
Q ss_pred EcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEE
Q 024185 40 FFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLF 117 (271)
Q Consensus 40 ~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~ 117 (271)
.+.+|...++++.|-|...+- +++|+.|++|.+|+=...+...+++.|. +.++.|+|||+++++++.||.+.+|
T Consensus 142 ei~GhSr~ins~~~KpsRPfR----i~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iy 217 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFR----IATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIY 217 (603)
T ss_pred eeeccceeEeeeeccCCCceE----EEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEE
Confidence 378999999999999999874 7799999999999877777777777776 6789999999999999999999999
Q ss_pred eCCCCCCCcceEEEec---CCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC-CceeeEEECCCCC
Q 024185 118 DSRSYDKGPFDTFLVG---GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-NTNTEATFTPDGQ 193 (271)
Q Consensus 118 d~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~ 193 (271)
|-.+++. ...+. +|.+.|.+++|+||++.+++++.|.++++||+.+.++++++.....- .+-..+-|- ..
T Consensus 218 DGktge~----vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd 291 (603)
T KOG0318|consen 218 DGKTGEK----VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KD 291 (603)
T ss_pred cCCCccE----EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CC
Confidence 9999986 55555 89999999999999999999999999999999999999988654431 123345564 45
Q ss_pred EEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCc
Q 024185 194 YVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNST 256 (271)
Q Consensus 194 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~ 256 (271)
.|++.+.+|.|.+++......++.+.+|...|+++..+||+.+|++|+ |.|.-|+..++..-+
T Consensus 292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc
Confidence 789999999999999999999999999999999999999999999999 999999998876543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-27 Score=192.46 Aligned_cols=199 Identities=14% Similarity=0.082 Sum_probs=155.1
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee-------------EEEecCC--cceEEEcC-CCCEEEEEecC
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ-------------GILRLRG--RPTVAFDQ-QGLVFAVAMEA 111 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~--~~~~~~~~-~~~~l~~~~~d 111 (271)
+.....++++.. +++++.+.....|+...+..+ ..+.+|. +.+++|+| ++++|++++.|
T Consensus 23 i~~~~~~~d~~~-----~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 23 VTPSTALWDCSN-----TIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred cccccccCCCCC-----cEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 334445556554 455566666666654333211 1345564 56699999 88999999999
Q ss_pred CeEEEEeCCCCCCC---cceEEEecCCccceEEEEEcCCC-cEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEE
Q 024185 112 GAIKLFDSRSYDKG---PFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 187 (271)
Q Consensus 112 ~~i~i~d~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~ 187 (271)
++|++||+.+.... ......+.+|...|.+++|+|++ ++|++++.|++|++||+++++.+..+..|... |.+++
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~--V~sla 175 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ--ITSLE 175 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCc--eEEEE
Confidence 99999999765320 01245678999999999999975 68999999999999999999988888877765 99999
Q ss_pred ECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcce-eEEEEEecCCcEEEEeC------CeEEEEcCCCCC
Q 024185 188 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV-VACLKWAPRRAMFVAAS------SVLSFWIPNPSS 253 (271)
Q Consensus 188 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~------~~v~iw~~~~~~ 253 (271)
|+|+|++|++++.|+.|++||+++++.+..+.+|.+. ...+.|.+++..+++++ +.|++||+++..
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 9999999999999999999999999999999888764 45678999887777653 579999997643
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=179.06 Aligned_cols=237 Identities=15% Similarity=0.198 Sum_probs=184.6
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee----EE
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ----GI 87 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~ 87 (271)
..++-++-+|.+..++.... ....+.+|.+++..+++.-....-.. |++++.|.++++|.++.++.. +.
T Consensus 116 ~~IltgsYDg~~riWd~~Gk-----~~~~~~Ght~~ik~v~~v~~n~~~~~--fvsas~Dqtl~Lw~~~~~~~~~~~~~~ 188 (423)
T KOG0313|consen 116 KWILTGSYDGTSRIWDLKGK-----SIKTIVGHTGPIKSVAWVIKNSSSCL--FVSASMDQTLRLWKWNVGENKVKALKV 188 (423)
T ss_pred ceEEEeecCCeeEEEecCCc-----eEEEEecCCcceeeeEEEecCCccce--EEEecCCceEEEEEecCchhhhhHHhH
Confidence 45666677888877776544 33447899999997766432222111 789999999999999877532 22
Q ss_pred EecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCC---------------------CcceEEEecCCccceEEEEE
Q 024185 88 LRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK---------------------GPFDTFLVGGDTAEVCDIKF 144 (271)
Q Consensus 88 ~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------------------~~~~~~~~~~~~~~v~~~~~ 144 (271)
-++|. +-+++..++|.++++|+.|..+.+|+...... .......+.+|..+|.++.|
T Consensus 189 ~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 189 CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 24775 55588899999999999999999999322100 11235567899999999999
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCce---eEEEecCC
Q 024185 145 SNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN---EVACWNGN 221 (271)
Q Consensus 145 s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~ 221 (271)
++ ...+++++.|.+|+.||+.+++...++..... +.++.++|..++|++|+.|..+++||.+++. ..+++.+|
T Consensus 269 ~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks---l~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH 344 (423)
T KOG0313|consen 269 SD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS---LNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH 344 (423)
T ss_pred cC-CCceEeecccceEEEEEeecccceeeeecCcc---eeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc
Confidence 98 56799999999999999999999888776554 8899999999999999999999999998753 35678999
Q ss_pred cceeEEEEEecCCc-EEEEeC--CeEEEEcCCCCC-CCcCCC
Q 024185 222 IGVVACLKWAPRRA-MFVAAS--SVLSFWIPNPSS-NSTDES 259 (271)
Q Consensus 222 ~~~v~~~~~s~~~~-~l~~~~--~~v~iw~~~~~~-~~~~~~ 259 (271)
...|.++.|+|... +|++++ +++++||+++.+ ++....
T Consensus 345 ~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 345 KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 99999999999655 677777 999999999876 444433
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-27 Score=194.70 Aligned_cols=238 Identities=11% Similarity=0.094 Sum_probs=198.1
Q ss_pred EeeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee
Q 024185 6 FALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ 85 (271)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 85 (271)
...|.+.-.+-+..+-.+..|+.... +.+-.+.+|-+-|..+.|++.-.+ ++|++.|.+|+||++.+++++
T Consensus 58 ~FH~~qplFVSGGDDykIkVWnYk~r----rclftL~GHlDYVRt~~FHheyPW-----IlSASDDQTIrIWNwqsr~~i 128 (1202)
T KOG0292|consen 58 DFHPTQPLFVSGGDDYKIKVWNYKTR----RCLFTLLGHLDYVRTVFFHHEYPW-----ILSASDDQTIRIWNWQSRKCI 128 (1202)
T ss_pred eecCCCCeEEecCCccEEEEEecccc----eehhhhccccceeEEeeccCCCce-----EEEccCCCeEEEEeccCCceE
Confidence 33444444444556677777776555 555668899999999999999999 999999999999999999999
Q ss_pred EEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCC-------------------------CcceEEEecCCccc
Q 024185 86 GILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK-------------------------GPFDTFLVGGDTAE 138 (271)
Q Consensus 86 ~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------------------------~~~~~~~~~~~~~~ 138 (271)
..+.+|. +.|..|+|....+++++-|.+|++||+..-+. ..+..+.+.||...
T Consensus 129 avltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG 208 (1202)
T KOG0292|consen 129 AVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG 208 (1202)
T ss_pred EEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc
Confidence 9999987 56688999999999999999999999854211 11234567899999
Q ss_pred eEEEEEcCCCcEEEEEecCCeEEEEECCCCeE--EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE
Q 024185 139 VCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK--RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 216 (271)
Q Consensus 139 v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 216 (271)
|..++|+|.-..+++|+.|..|++|.+...+. +.+..+|.++ |.++-|+|..+++++.++|++|++||+...+.++
T Consensus 209 VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nn--Vssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~ 286 (1202)
T KOG0292|consen 209 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNN--VSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQ 286 (1202)
T ss_pred cceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCC--cceEEecCccceeEecCCCccEEEEeccccccee
Confidence 99999999999999999999999999876543 4456677766 9999999999999999999999999999999999
Q ss_pred EecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCC
Q 024185 217 CWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSN 254 (271)
Q Consensus 217 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~ 254 (271)
+++.....-+.++-+|..+++++|- +-+.+|.++..++
T Consensus 287 tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 287 TFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP 325 (1202)
T ss_pred eeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCc
Confidence 9976677889999999999999997 6677777765443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=192.49 Aligned_cols=182 Identities=8% Similarity=0.046 Sum_probs=149.9
Q ss_pred hhccCceEEEEEecCcceeEEEecCC--cceEEEcCC-CCEEEEEecCCeEEEEeCCCCCCCc----ceEEEecCCccce
Q 024185 67 LLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYDKGP----FDTFLVGGDTAEV 139 (271)
Q Consensus 67 s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~~~~v 139 (271)
.|+.++.+++|+..+...+..+.+|. +.+++|+|+ +++|++|+.|+.|++||+.+..... .....+.+|...|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 56789999999998877888888885 566999997 7899999999999999997643100 1133567899999
Q ss_pred EEEEEcCCCcEE-EEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEe
Q 024185 140 CDIKFSNDGKSM-LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 218 (271)
Q Consensus 140 ~~~~~s~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 218 (271)
.+++|+|++..+ ++++.|++|++||+++++....+. +.. .+.+++|+|+|++|++++.|+.|++||+++++.+..+
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~--~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPK--KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCC--cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 999999988764 688999999999999998777665 333 4999999999999999999999999999999999999
Q ss_pred cCCcceeEE-----EEEecCCcEEEEeC--C----eEEEEcCCC
Q 024185 219 NGNIGVVAC-----LKWAPRRAMFVAAS--S----VLSFWIPNP 251 (271)
Q Consensus 219 ~~~~~~v~~-----~~~s~~~~~l~~~~--~----~v~iw~~~~ 251 (271)
.+|.+.+.. ..|++++.+|++++ + .|+|||++.
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 999875433 33558888888875 2 599999985
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=183.00 Aligned_cols=232 Identities=13% Similarity=0.149 Sum_probs=198.8
Q ss_pred eecceeEEeeecceeeEEEEeeccceee----EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQC----MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS 83 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 83 (271)
-|..+.|+-+.-+|-+..|+..+|.... .....|--++.+|.|+.||.|... +++|+.||.|++|.+++|.
T Consensus 222 SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM-----lAsGsqDGkIKvWri~tG~ 296 (508)
T KOG0275|consen 222 SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM-----LASGSQDGKIKVWRIETGQ 296 (508)
T ss_pred CCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHH-----hhccCcCCcEEEEEEecch
Confidence 3666777778889999999988875432 123345567889999999999998 9999999999999999999
Q ss_pred eeEEEe-cC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeE
Q 024185 84 FQGILR-LR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI 160 (271)
Q Consensus 84 ~~~~~~-~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 160 (271)
+++.|. .| ++.|+.|+.|+..+.+++.|.++++.-+..++. ...+.+|...|+...|++||..+++++.||+|
T Consensus 297 ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~----LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 297 CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC----LKEFRGHSSYVNEATFTDDGHHIISASSDGTV 372 (508)
T ss_pred HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh----HHHhcCccccccceEEcCCCCeEEEecCCccE
Confidence 999985 44 688999999999999999999999999999997 66678999999999999999999999999999
Q ss_pred EEEECCCCeEEEEeecCC---------------------------------------------CCCceeeEEECCCCCEE
Q 024185 161 YVLDAYGGEKRCGFSLEP---------------------------------------------SPNTNTEATFTPDGQYV 195 (271)
Q Consensus 161 ~~~d~~~~~~~~~~~~~~---------------------------------------------~~~~v~~~~~~~~~~~l 195 (271)
++|+..+.+++.+|+... ..+...+.+.+|.|.++
T Consensus 373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewi 452 (508)
T KOG0275|consen 373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWI 452 (508)
T ss_pred EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEE
Confidence 999998776655443211 11234566789999999
Q ss_pred EEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEc
Q 024185 196 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 248 (271)
Q Consensus 196 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~ 248 (271)
++.++|+.++.+.+.+|+.-.++.-|...+..++-+|..+++++-+ |.+++|.
T Consensus 453 YcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 453 YCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999999999999999887 8899995
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-28 Score=177.79 Aligned_cols=177 Identities=15% Similarity=0.243 Sum_probs=152.0
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee---EEE-ecCCcceEEEcCCCCEEEEEecCC
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ---GIL-RLRGRPTVAFDQQGLVFAVAMEAG 112 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~-~~~~~~~~~~~~~~~~l~~~~~d~ 112 (271)
.++.+-.|...|+++.|+|.... |++++.|++|++||+...... +.+ ..+.+.+++|+|.|.+|++|.+..
T Consensus 164 vIRTlYDH~devn~l~FHPre~I-----LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp 238 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETI-----LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHP 238 (430)
T ss_pred eEeehhhccCcccceeecchhhe-----EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCC
Confidence 56777789999999999999998 999999999999999764432 333 345688899999999999999999
Q ss_pred eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCC
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 192 (271)
.+++||+++.++- .....-.+|.+.|+++.+++.|++.++++.||.|++||--+++++.++...-+...|.+..|..+|
T Consensus 239 ~~rlYdv~T~Qcf-vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ 317 (430)
T KOG0640|consen 239 TLRLYDVNTYQCF-VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG 317 (430)
T ss_pred ceeEEeccceeEe-eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC
Confidence 9999999998751 111234578999999999999999999999999999999999999988655455679999999999
Q ss_pred CEEEEecCCCcEEEEEcCCceeEEEec
Q 024185 193 QYVVSGSGDGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~~~~~~~~~~~ 219 (271)
+|+++.+.|..+++|.+.+++++..+.
T Consensus 318 kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 318 KYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred eEEeecCCcceeeeeeecCCceEEEEe
Confidence 999999999999999999999887764
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=183.33 Aligned_cols=228 Identities=13% Similarity=0.190 Sum_probs=187.4
Q ss_pred EEeeecceeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc
Q 024185 5 VFALPITQALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS 83 (271)
Q Consensus 5 ~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 83 (271)
|.++...+.+++. .++..+..|+..++ ..+..+-+|..+|..+.|+.. + +++++.|.++.+||+....
T Consensus 240 VLCLqyd~rviisGSSDsTvrvWDv~tg----e~l~tlihHceaVLhlrf~ng--~-----mvtcSkDrsiaVWdm~sps 308 (499)
T KOG0281|consen 240 VLCLQYDERVIVSGSSDSTVRVWDVNTG----EPLNTLIHHCEAVLHLRFSNG--Y-----MVTCSKDRSIAVWDMASPT 308 (499)
T ss_pred EEeeeccceEEEecCCCceEEEEeccCC----chhhHHhhhcceeEEEEEeCC--E-----EEEecCCceeEEEeccCch
Confidence 4566666666665 56889999999888 666778899999999999864 3 5699999999999997654
Q ss_pred ---eeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC
Q 024185 84 ---FQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 158 (271)
Q Consensus 84 ---~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 158 (271)
+.+.+.+|. ++++.| +.+++++++.|.+|++|++.+.+. ...+.+|...|.|+.+. |+++++|+.|.
T Consensus 309 ~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~ef----vRtl~gHkRGIAClQYr--~rlvVSGSSDn 380 (499)
T KOG0281|consen 309 DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEF----VRTLNGHKRGIACLQYR--DRLVVSGSSDN 380 (499)
T ss_pred HHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceee----ehhhhcccccceehhcc--CeEEEecCCCc
Confidence 234456774 455666 566999999999999999999887 77889999999999875 78999999999
Q ss_pred eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee---------EEEecCCcceeEEEE
Q 024185 159 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE---------VACWNGNIGVVACLK 229 (271)
Q Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~v~~~~ 229 (271)
+|++||+..|.+++.+++|..- |.++.|+ .+.+++|+.||+|++||+..+.. +..+..|.+.|..+.
T Consensus 381 tIRlwdi~~G~cLRvLeGHEeL--vRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ 456 (499)
T KOG0281|consen 381 TIRLWDIECGACLRVLEGHEEL--VRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ 456 (499)
T ss_pred eEEEEeccccHHHHHHhchHHh--hhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEe
Confidence 9999999999999999999987 8889984 56899999999999999976543 344567889999999
Q ss_pred EecCCcEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 230 WAPRRAMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 230 ~s~~~~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
|. ...+++++ .+|.|||+..+..-..
T Consensus 457 FD--~fqIvsssHddtILiWdFl~~~~~~~ 484 (499)
T KOG0281|consen 457 FD--EFQIISSSHDDTILIWDFLNGPPSAA 484 (499)
T ss_pred ec--ceEEEeccCCCeEEEEEcCCCCcccc
Confidence 95 55677776 7899999988765543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-28 Score=188.95 Aligned_cols=209 Identities=12% Similarity=0.158 Sum_probs=165.8
Q ss_pred EcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-------eeEEEecCCcceEEEcCCCCEEEEEecCC
Q 024185 40 FFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-------FQGILRLRGRPTVAFDQQGLVFAVAMEAG 112 (271)
Q Consensus 40 ~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 112 (271)
.+.+|+..|..+++.|.|.. |++|+.|-+|++||+.... .+.--..|.+.++.|++.|..|++.+...
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR-----~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGAR-----FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred eccCCceEEEEeeecCCCce-----eeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 37899999999999999998 9999999999999996422 22223567789999999999999888889
Q ss_pred eEEEEeCCCCCCC--------cceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEECCCCe-EEEEeec---CCC
Q 024185 113 AIKLFDSRSYDKG--------PFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGE-KRCGFSL---EPS 179 (271)
Q Consensus 113 ~i~i~d~~~~~~~--------~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~---~~~ 179 (271)
..+++|....+.. .......+||...++|-+|+|+ ...+++++.||++++||+.+.+ .+..++. ...
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 9999998765431 1112335689999999999995 4568899999999999997643 2333332 222
Q ss_pred CCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee---EEEecCCcc--eeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 180 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE---VACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 180 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~--~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
...++.++|+|||+++|+|+.||+|.+|+..+... ...-.+|.. .|+++.||+||++|++-+ +++++||++..
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 25688899999999999999999999999765332 333466766 899999999999999988 88999999875
Q ss_pred C
Q 024185 253 S 253 (271)
Q Consensus 253 ~ 253 (271)
+
T Consensus 397 k 397 (641)
T KOG0772|consen 397 K 397 (641)
T ss_pred c
Confidence 4
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-27 Score=168.74 Aligned_cols=208 Identities=15% Similarity=0.127 Sum_probs=181.5
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
+++|+.+++.+.++.+|.+ |.+++.|.+..+|-..+|+.+.++.+|. ++++..+.+.+++++|+.|.++++||
T Consensus 6 l~GHERplTqiKyN~eGDL-----lFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDL-----LFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred cccCccccceEEecCCCcE-----EEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence 6789999999999999999 8999999999999999999999999995 67899999999999999999999999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-----CCeEEEEECC-------CCeEEEEeecCCCCCceeeE
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-----NNNIYVLDAY-------GGEKRCGFSLEPSPNTNTEA 186 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----d~~i~~~d~~-------~~~~~~~~~~~~~~~~v~~~ 186 (271)
+++++. ....+ ...+|..+.|+++|++++.... .+.|.++|++ ..++...+..+... ++.+
T Consensus 81 v~tGk~----la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk--it~a 153 (327)
T KOG0643|consen 81 VETGKQ----LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK--ITSA 153 (327)
T ss_pred cCCCcE----EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc--eeee
Confidence 999996 44333 3578999999999998887765 3679999998 34556666666654 8889
Q ss_pred EECCCCCEEEEecCCCcEEEEEcCCcee-EEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCCC
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDEST 260 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~~ 260 (271)
-|.|-+++|++|.+||.|.+||.++|+. +...+.|...|+.+.++||..+++++| .+-++||..+..+++...+
T Consensus 154 ~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 154 LWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred eecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee
Confidence 9999999999999999999999999855 555578999999999999999999999 7799999999887776653
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-26 Score=169.50 Aligned_cols=201 Identities=15% Similarity=0.185 Sum_probs=166.0
Q ss_pred EEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCC--EEEEEecCCe
Q 024185 38 IEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGL--VFAVAMEAGA 113 (271)
Q Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~--~l~~~~~d~~ 113 (271)
+-.|..|.+.+++++.+ +.+ ++||+.|.+|+|||+.+......+-.|. ++++.|.++-. .|++|+.||.
T Consensus 36 lF~~~aH~~sitavAVs--~~~-----~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPY-----VASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred cccccccccceeEEEec--cee-----EeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCc
Confidence 34467889999988876 567 8899999999999999988888887664 67799988764 8999999999
Q ss_pred EEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECC---
Q 024185 114 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP--- 190 (271)
Q Consensus 114 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~--- 190 (271)
|.+|+....+. ...+++|.+.|+.++.+|.+++.++.+.|+.+++||+-+|+.-..++.... ...+.|+|
T Consensus 109 i~iw~~~~W~~----~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~---at~v~w~~~Gd 181 (362)
T KOG0294|consen 109 IIIWRVGSWEL----LKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK---ATLVSWSPQGD 181 (362)
T ss_pred EEEEEcCCeEE----eeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc---ceeeEEcCCCC
Confidence 99999988765 777889999999999999999999999999999999977765443332221 11133333
Q ss_pred ------------------------------------CCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEE--ec
Q 024185 191 ------------------------------------DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW--AP 232 (271)
Q Consensus 191 ------------------------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--s~ 232 (271)
++..+++|++|+.|.+||..+..+...+.+|...|.++.+ .|
T Consensus 182 ~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~ 261 (362)
T KOG0294|consen 182 HFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNP 261 (362)
T ss_pred EEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecC
Confidence 3456778899999999999999999999999999999985 55
Q ss_pred CCcEEEEeC--CeEEEEcCCCC
Q 024185 233 RRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 233 ~~~~l~~~~--~~v~iw~~~~~ 252 (271)
++.+|+++| |.|++||++..
T Consensus 262 ~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 262 EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CceEEEEeccCceEEEEEcccc
Confidence 688999997 99999999876
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=184.61 Aligned_cols=208 Identities=13% Similarity=0.167 Sum_probs=172.9
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcc--eEEEcCCC-CEEEEEecCCeEE
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRP--TVAFDQQG-LVFAVAMEAGAIK 115 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~-~~l~~~~~d~~i~ 115 (271)
+.+...+..+.++.|-.||+. ++.|+..|.|++||..+...++.+..|..+ ...|+|++ ..+++|++|+.++
T Consensus 62 k~~srFk~~v~s~~fR~DG~L-----laaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRL-----LAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK 136 (487)
T ss_pred hhHHhhccceeEEEeecCCeE-----EEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence 335566778999999999999 899999999999998776677788887654 48999966 5677788889999
Q ss_pred EEeCCCCCCCcceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECCCCC
Q 024185 116 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
+||+.+... ...+.+|++.|.|.+|+|. +..+++|+.||.|++||++.. ..+..+. |..+ |.++.+-|.|.
T Consensus 137 ~~d~s~a~v----~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~p--Ve~vl~lpsgs 209 (487)
T KOG0310|consen 137 YWDLSTAYV----QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCP--VESVLALPSGS 209 (487)
T ss_pred EEEcCCcEE----EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCc--eeeEEEcCCCC
Confidence 999998773 6678899999999999994 568899999999999999987 5555554 5555 99999999999
Q ss_pred EEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 194 YVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 194 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
.+++++.+ .+++||+.+ ++.+..+..|...|+|+.+..++..|++++ +.+++||+.+.+......
T Consensus 210 ~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~ 277 (487)
T KOG0310|consen 210 LIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK 277 (487)
T ss_pred EEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee
Confidence 99988854 799999985 455566666999999999999999999999 999999987766654443
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=190.33 Aligned_cols=236 Identities=13% Similarity=0.120 Sum_probs=200.4
Q ss_pred ecceeEEeeecceeeEEEEeecccee--eEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc--ce
Q 024185 9 PITQALLFARQNIILILLESLCGIYQ--CMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA--SF 84 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~ 84 (271)
|.++.|+-+..+|.+..++....... ......++.|..-++.++...+++. |+|++.|-+|++|+...+ -+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~t-----lIS~SsDtTVK~W~~~~~~~~c 109 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKT-----LISASSDTTVKVWNAHKDNTFC 109 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCc-----eEEecCCceEEEeecccCcchh
Confidence 44455666677888888876543322 1245668999999999999999987 899999999999999877 57
Q ss_pred eEEEecCC--cceEEE-cCCCCEEEEEecCCeEEEEeCCCCCC------CcceEEEec-CCccceEEEEEcCCCcEEEEE
Q 024185 85 QGILRLRG--RPTVAF-DQQGLVFAVAMEAGAIKLFDSRSYDK------GPFDTFLVG-GDTAEVCDIKFSNDGKSMLLT 154 (271)
Q Consensus 85 ~~~~~~~~--~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~ 154 (271)
..++..|. +.|+++ .++...+|+|+-|+.|.+||++++.. .......+. ++..+|++++.++.|..+++|
T Consensus 110 ~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 110 MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence 77788886 567888 77888999999999999999997622 111223344 788999999999999999999
Q ss_pred ecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCC
Q 024185 155 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR 234 (271)
Q Consensus 155 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 234 (271)
+..+.+++||.++++.+..+.+|... |..+..++||+.+++++.||+|++||+...+++.++..|...|+++..+|+-
T Consensus 190 gtek~lr~wDprt~~kimkLrGHTdN--Vr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf 267 (735)
T KOG0308|consen 190 GTEKDLRLWDPRTCKKIMKLRGHTDN--VRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSF 267 (735)
T ss_pred CcccceEEeccccccceeeeeccccc--eEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCc
Confidence 99999999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeC--CeEEEEcCCC
Q 024185 235 AMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 235 ~~l~~~~--~~v~iw~~~~ 251 (271)
..+.+|+ +.|..=|+.+
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred ceEEecCCCCcEEecccCC
Confidence 9999998 7788878777
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=181.86 Aligned_cols=204 Identities=17% Similarity=0.200 Sum_probs=160.9
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-eeEEEecC-------CcceEEEcCCCCEEEEEecCC
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-FQGILRLR-------GRPTVAFDQQGLVFAVAMEAG 112 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~-------~~~~~~~~~~~~~l~~~~~d~ 112 (271)
-++|...+++.+|+|..+.. |++++.||++++||+++.+ .++.+... .+..++|++|+++||+|..||
T Consensus 264 TKGHia~lt~g~whP~~k~~----FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG 339 (641)
T KOG0772|consen 264 TKGHIAELTCGCWHPDNKEE----FLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG 339 (641)
T ss_pred cCCceeeeeccccccCcccc----eEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC
Confidence 46888899999999998765 7799999999999997654 33444321 245599999999999999999
Q ss_pred eEEEEeCCCCCCCcceEEEecCCcc--ceEEEEEcCCCcEEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEEC
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDTA--EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFT 189 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~ 189 (271)
.|.+|+.......+. ...-++|.. .|+|++||+||++|++-+.|+++++||++.. +++....+-.....-+.++||
T Consensus 340 SIQ~W~~~~~~v~p~-~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 340 SIQIWDKGSRTVRPV-MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred ceeeeecCCcccccc-eEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC
Confidence 999999865543222 223357777 8999999999999999999999999999875 445554444444445679999
Q ss_pred CCCCEEEEecC------CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcC
Q 024185 190 PDGQYVVSGSG------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 190 ~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
|+.+++++|.. .|.+.+||..+...++.+.-....|..+.|+|.=+.+..++ |++++|--
T Consensus 419 Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 419 PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred CCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence 99999999854 46899999999999999987788899999999766555554 77777643
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=189.49 Aligned_cols=225 Identities=15% Similarity=0.210 Sum_probs=188.6
Q ss_pred eeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
+.+++. ..+.++..|+...+ .....+.+|.+.+.++...+.- +++|+.|.+|++|++++++.+.++.+
T Consensus 261 ~~~lvsgS~D~t~rvWd~~sg----~C~~~l~gh~stv~~~~~~~~~-------~~sgs~D~tVkVW~v~n~~~l~l~~~ 329 (537)
T KOG0274|consen 261 GDKLVSGSTDKTERVWDCSTG----ECTHSLQGHTSSVRCLTIDPFL-------LVSGSRDNTVKVWDVTNGACLNLLRG 329 (537)
T ss_pred CCEEEEEecCCcEEeEecCCC----cEEEEecCCCceEEEEEccCce-------EeeccCCceEEEEeccCcceEEEecc
Confidence 444554 55899999998888 5556788999999988877653 44889999999999999999999998
Q ss_pred CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC-e
Q 024185 91 RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-E 169 (271)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~ 169 (271)
|..++-+..-++.++++|+.|++|++||+.+++. ...+.+|...|.++.+.+. ..+++|+.|++|++||+++. +
T Consensus 330 h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~c----l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~ 404 (537)
T KOG0274|consen 330 HTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKC----LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRK 404 (537)
T ss_pred ccccEEEEEecCCEEEEEecCceEEEEEhhhcee----eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhh
Confidence 8755544444599999999999999999998887 7788899999999988876 78999999999999999999 8
Q ss_pred EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecC-CcceeEEEEEecCCcEEEEeC-CeEEEE
Q 024185 170 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAAS-SVLSFW 247 (271)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~v~iw 247 (271)
++.++..|..- + -.+...+++|++++.|++|++||..++++++.+.+ |.+.|..+++. +...++++. +.+++|
T Consensus 405 c~~tl~~h~~~--v--~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 405 CIHTLQGHTSL--V--SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLW 479 (537)
T ss_pred hhhhhcCCccc--c--cccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEE
Confidence 99999888865 4 33445678999999999999999999999999988 67888888876 344444444 999999
Q ss_pred cCCCCCCCcC
Q 024185 248 IPNPSSNSTD 257 (271)
Q Consensus 248 ~~~~~~~~~~ 257 (271)
|++++++...
T Consensus 480 dl~~~~~~~~ 489 (537)
T KOG0274|consen 480 DLRSGTLIRT 489 (537)
T ss_pred ecccCchhhh
Confidence 9999887663
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-27 Score=192.02 Aligned_cols=205 Identities=11% Similarity=0.109 Sum_probs=162.3
Q ss_pred EEcc-cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC--------------------------------c---
Q 024185 39 EFFA-TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML--------------------------------A--- 82 (271)
Q Consensus 39 ~~~~-~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~--------------------------------~--- 82 (271)
+.+. .|++.|.++.||+||++ ||+||.||.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKy-----LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKY-----LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eccccccCCcEEEEEeCCCCce-----eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 3455 89999999999999999 99999999999997644 0
Q ss_pred -------------------------ceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCC
Q 024185 83 -------------------------SFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD 135 (271)
Q Consensus 83 -------------------------~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 135 (271)
++++.+.+|. +..++|+. .++|++++.|.+|++|++...++ +..+ .|
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~C--L~~F---~H 408 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKEC--LKVF---SH 408 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcce--eeEE---ec
Confidence 0111223342 33367764 45799999999999999998775 3333 49
Q ss_pred ccceEEEEEcC-CCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee
Q 024185 136 TAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 214 (271)
Q Consensus 136 ~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 214 (271)
.+.|+|++|+| |.++|++|+-|+.++||++...+.+.-...+.- |++++|.|||++.+.|+.+|..++|+....+.
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~l---ITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDL---ITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL 485 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhh---heeEEeccCCceEEEEEeccEEEEEEccCCeE
Confidence 99999999999 889999999999999999998887776665543 99999999999999999999999999988776
Q ss_pred EEEec---------CCcceeEEEEEecCCc--EEEEeC-CeEEEEcCCCCCCCcCC
Q 024185 215 VACWN---------GNIGVVACLKWAPRRA--MFVAAS-SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 215 ~~~~~---------~~~~~v~~~~~s~~~~--~l~~~~-~~v~iw~~~~~~~~~~~ 258 (271)
...+. .|. .|+++.|.|... +|++.. ..|+|+|.+...+....
T Consensus 486 ~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~Kf 540 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKF 540 (712)
T ss_pred EEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhh
Confidence 65431 133 799999998543 666665 88999999766554443
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=177.71 Aligned_cols=220 Identities=20% Similarity=0.236 Sum_probs=179.3
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe-c
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR-L 90 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~ 90 (271)
..++....++....|+.-.. .....+.+|++.+.++.|...... +++|+.|.+|++||+.+..+.+++- +
T Consensus 232 ~~~iAas~d~~~r~Wnvd~~----r~~~TLsGHtdkVt~ak~~~~~~~-----vVsgs~DRtiK~WDl~k~~C~kt~l~~ 302 (459)
T KOG0288|consen 232 KHVIAASNDKNLRLWNVDSL----RLRHTLSGHTDKVTAAKFKLSHSR-----VVSGSADRTIKLWDLQKAYCSKTVLPG 302 (459)
T ss_pred ceEEeecCCCceeeeeccch----hhhhhhcccccceeeehhhccccc-----eeeccccchhhhhhhhhhheecccccc
Confidence 34444455666777766555 455668899999999999888776 7799999999999999988776653 3
Q ss_pred CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 91 RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
.....+..+ ...+++|..|+.|++||.+.... ....+.+ +.|+++..++++..+++++.|.++.+.|+++.+.
T Consensus 303 S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~----~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI 375 (459)
T KOG0288|consen 303 SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADK----TRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI 375 (459)
T ss_pred ccccceEec--ceeeeecccccceEEEeccCCce----eeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccE
Confidence 334444444 56688999999999999998876 5555554 5899999999999999999999999999999998
Q ss_pred EEEeecCCCC--CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcc--eeEEEEEecCCcEEEEeC--CeE
Q 024185 171 RCGFSLEPSP--NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG--VVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 171 ~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~--~~v 244 (271)
...+...... ...+.+.|||++.|+++|+.||.|+||++.++++...+..... .|++++|+|.|..|++++ +.+
T Consensus 376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v 455 (459)
T KOG0288|consen 376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV 455 (459)
T ss_pred EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence 8877654332 3477899999999999999999999999999999888865444 599999999999999998 668
Q ss_pred EEE
Q 024185 245 SFW 247 (271)
Q Consensus 245 ~iw 247 (271)
.+|
T Consensus 456 ~lW 458 (459)
T KOG0288|consen 456 TLW 458 (459)
T ss_pred Eec
Confidence 888
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=161.11 Aligned_cols=217 Identities=13% Similarity=0.127 Sum_probs=181.0
Q ss_pred eecceeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 8 LPITQALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 8 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
-|.+..+++. ..+..+..++...+ ..........+.+. +.|+|+|.+ ++.++.|..|...|.++.+...
T Consensus 73 ~~~~~d~~atas~dk~ir~wd~r~~----k~~~~i~~~~eni~-i~wsp~g~~-----~~~~~kdD~it~id~r~~~~~~ 142 (313)
T KOG1407|consen 73 DPKHPDLFATASGDKTIRIWDIRSG----KCTARIETKGENIN-ITWSPDGEY-----IAVGNKDDRITFIDARTYKIVN 142 (313)
T ss_pred CCCCCcceEEecCCceEEEEEeccC----cEEEEeeccCcceE-EEEcCCCCE-----EEEecCcccEEEEEecccceee
Confidence 3444445554 55778888888777 22233444445555 889999999 8889999999999999888776
Q ss_pred EEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEEC
Q 024185 87 ILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 165 (271)
..+.. .+.-++|+.++.+++.....|.|.|.....-+. ...+++|.....|+.|+|+|++||+|+.|..+.+||+
T Consensus 143 ~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp----v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~ 218 (313)
T KOG1407|consen 143 EEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKP----VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDV 218 (313)
T ss_pred hhcccceeeeeeecCCCCEEEEecCCceEEEEecccccc----ccccccCCcceEEEEECCCCceEeeccccceeeccCh
Confidence 66554 345588888888887777789999999886554 6778899999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
..--+++.+....-+ |..+.|+.||++||++++|..|-|=++++|..+..++ +.++-..++|+|...+||-++
T Consensus 219 ~ELiC~R~isRldwp--VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 219 DELICERCISRLDWP--VRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYAC 291 (313)
T ss_pred hHhhhheeeccccCc--eEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEe
Confidence 998888988887776 9999999999999999999999999999999999997 678889999999999998774
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-26 Score=182.35 Aligned_cols=228 Identities=18% Similarity=0.258 Sum_probs=188.0
Q ss_pred EeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec-CC-
Q 024185 15 LFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL-RG- 92 (271)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~- 92 (271)
+....+-.+++++...+ ........+...+.++.|+++|.+ |+.|..+|.|.|||..+.+.+..+.. |.
T Consensus 191 laValg~~vylW~~~s~----~v~~l~~~~~~~vtSv~ws~~G~~-----LavG~~~g~v~iwD~~~~k~~~~~~~~h~~ 261 (484)
T KOG0305|consen 191 LAVALGQSVYLWSASSG----SVTELCSFGEELVTSVKWSPDGSH-----LAVGTSDGTVQIWDVKEQKKTRTLRGSHAS 261 (484)
T ss_pred EEEEecceEEEEecCCC----ceEEeEecCCCceEEEEECCCCCE-----EEEeecCCeEEEEehhhccccccccCCcCc
Confidence 33333557777777777 223333444889999999999999 99999999999999999988888887 65
Q ss_pred -cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEE
Q 024185 93 -RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 171 (271)
Q Consensus 93 -~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~ 171 (271)
+.+++|. +..+.+|+.++.|..+|++..+. ... .+.+|...|+.++|++|++++|+|+.|+.+.|||....+++
T Consensus 262 rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~--~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 262 RVGSLAWN--SSVLSSGSRDGKILNHDVRISQH--VVS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred eeEEEecc--CceEEEecCCCcEEEEEEecchh--hhh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 4457776 77899999999999999998775 112 37889999999999999999999999999999999888888
Q ss_pred EEeecCCCCCceeeEEECCC-CCEEEEecC--CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC----CeE
Q 024185 172 CGFSLEPSPNTNTEATFTPD-GQYVVSGSG--DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS----SVL 244 (271)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~~v 244 (271)
..+..|... |..++|+|- ...||+|+. |+.|++||..+++.+..+.. .+.|.++.|++..+-|+++. +.|
T Consensus 337 ~~~~~H~aA--VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i 413 (484)
T KOG0305|consen 337 FTFTEHTAA--VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQI 413 (484)
T ss_pred EEEecccee--eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcE
Confidence 888888866 999999996 557887754 89999999999999998874 45699999999987666664 679
Q ss_pred EEEcCCCCCCCcCCC
Q 024185 245 SFWIPNPSSNSTDES 259 (271)
Q Consensus 245 ~iw~~~~~~~~~~~~ 259 (271)
.||+..+.+......
T Consensus 414 ~lw~~ps~~~~~~l~ 428 (484)
T KOG0305|consen 414 TLWKYPSMKLVAELL 428 (484)
T ss_pred EEEeccccceeeeec
Confidence 999998876665554
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=169.91 Aligned_cols=223 Identities=14% Similarity=0.142 Sum_probs=177.4
Q ss_pred EEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC------------
Q 024185 14 LLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML------------ 81 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~------------ 81 (271)
++.+..+..+.++....+......+..-++|+..|.++...+++.. +++|+.|..+++|+.++
T Consensus 162 fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr-----~~SgS~D~~lkiWs~~~~~~~~~E~~s~~ 236 (423)
T KOG0313|consen 162 FVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTR-----FCSGSWDTMLKIWSVETDEEDELESSSNR 236 (423)
T ss_pred EEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCe-----EEeecccceeeecccCCCccccccccchh
Confidence 4444556666666665553333333334599999999999999998 89999999999999321
Q ss_pred -------------cceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC
Q 024185 82 -------------ASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN 146 (271)
Q Consensus 82 -------------~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 146 (271)
+.++.++.+|. +..+.|++ ...+++++.|.+|+.||+++++. ...+. ....+.|+.++|
T Consensus 237 rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~----~~~~~-~~ksl~~i~~~~ 310 (423)
T KOG0313|consen 237 RRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL----KSTLT-TNKSLNCISYSP 310 (423)
T ss_pred hhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc----eeeee-cCcceeEeeccc
Confidence 12445667775 45588887 66799999999999999999886 33333 346899999999
Q ss_pred CCcEEEEEecCCeEEEEECCCCe---EEEEeecCCCCCceeeEEECCCCC-EEEEecCCCcEEEEEcCCce-eEEEecCC
Q 024185 147 DGKSMLLTTTNNNIYVLDAYGGE---KRCGFSLEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTRN-EVACWNGN 221 (271)
Q Consensus 147 ~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~ 221 (271)
..++|++|+.|..+++||.+++. ..+++.+|.+ .|.++.|+|... .|++|+.|+++++||+++.+ +++.+.+|
T Consensus 311 ~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n--wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 311 LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN--WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred ccceeeecCCCCceeecCCCCCCCceeEEeeecchh--hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence 99999999999999999998753 3455777775 599999999765 56789999999999999887 99999999
Q ss_pred cceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 222 IGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 222 ~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
...|.++.|. ++.++++|+ ++++++...
T Consensus 389 ~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 389 NDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 9999999998 566899998 789998653
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=183.02 Aligned_cols=237 Identities=15% Similarity=0.159 Sum_probs=197.1
Q ss_pred eeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 7 ALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
++.....+++..+++.+..|+..+. ..++.+.- +.+.+..|-|.+++ +++|...|.+.+||+.+...+.
T Consensus 380 ~vS~d~~~~~Sga~~SikiWn~~t~----kciRTi~~--~y~l~~~Fvpgd~~-----Iv~G~k~Gel~vfdlaS~~l~E 448 (888)
T KOG0306|consen 380 CVSSDSILLASGAGESIKIWNRDTL----KCIRTITC--GYILASKFVPGDRY-----IVLGTKNGELQVFDLASASLVE 448 (888)
T ss_pred EeecCceeeeecCCCcEEEEEccCc----ceeEEecc--ccEEEEEecCCCce-----EEEeccCCceEEEEeehhhhhh
Confidence 4444456666677888888887665 33344433 37788899999998 8899999999999999999888
Q ss_pred EEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCC-----CCC----CcceEEEecCCccceEEEEEcCCCcEEEEEe
Q 024185 87 ILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRS-----YDK----GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155 (271)
Q Consensus 87 ~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 155 (271)
+++.|. ++.++.+||++.+++|+.|.+|++||..- +.. ...+...++ -+..|.|+++||||++|+++-
T Consensus 449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEe
Confidence 888775 67799999999999999999999999642 111 000111111 246799999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCc
Q 024185 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA 235 (271)
Q Consensus 156 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 235 (271)
-|.++++|-+.+-+..-.+.+|.-| |.|+..+||++.+++|+.|..|++|-+.-|.+-+.+-+|...|.++.|-|+..
T Consensus 528 LdnTVkVyflDtlKFflsLYGHkLP--V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~ 605 (888)
T KOG0306|consen 528 LDNTVKVYFLDTLKFFLSLYGHKLP--VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH 605 (888)
T ss_pred ccCeEEEEEecceeeeeeecccccc--eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccce
Confidence 9999999999999988888899887 99999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeC--CeEEEEcCCCCCCCcC
Q 024185 236 MFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 236 ~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
++.+++ +.++-||-+..+....
T Consensus 606 ~FFt~gKD~kvKqWDg~kFe~iq~ 629 (888)
T KOG0306|consen 606 LFFTCGKDGKVKQWDGEKFEEIQK 629 (888)
T ss_pred eEEEecCcceEEeechhhhhhhee
Confidence 999998 8899999887765443
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-27 Score=192.15 Aligned_cols=192 Identities=18% Similarity=0.211 Sum_probs=177.4
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCc--ceEEEcCCCCEEEEEecCCeEEE
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKL 116 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~~i~i 116 (271)
..|.+|+..|.++.|++.... ++.|+.+|+|++||++.++.++++.+|.. ..+.|+|-+.+.+.|+.|+.+++
T Consensus 64 ~S~~~hespIeSl~f~~~E~L-----laagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~i 138 (825)
T KOG0267|consen 64 TSLTGHESPIESLTFDTSERL-----LAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKI 138 (825)
T ss_pred heeeccCCcceeeecCcchhh-----hcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccccccee
Confidence 348899999999999999998 88999999999999999999999999864 44899999999999999999999
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEE
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 196 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 196 (271)
||.+...+ ...+.+|...+.++.|+|+|++++.++.|..+++||+..|+....|+.|... +..+.|+|..-+++
T Consensus 139 wD~Rk~Gc----~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~--v~sle~hp~e~Lla 212 (825)
T KOG0267|consen 139 WDIRKKGC----SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGK--VQSLEFHPLEVLLA 212 (825)
T ss_pred hhhhccCc----eeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccc--ccccccCchhhhhc
Confidence 99997666 7778889999999999999999999999999999999999999999988876 77899999999999
Q ss_pred EecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 197 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 197 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
+|+.|+++++||+++.+.+.........|.+.+|+|+++.+++|.
T Consensus 213 ~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 213 PGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred cCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence 999999999999999999888877788999999999999999886
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=173.87 Aligned_cols=222 Identities=16% Similarity=0.124 Sum_probs=180.1
Q ss_pred eeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
.+|+.+ -..|.+..++.... ..++.+..|+.++....|+|.+..+ +++|+.|+.+++||+.+...+..+.+
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r----~iLR~~~ah~apv~~~~f~~~d~t~----l~s~sDd~v~k~~d~s~a~v~~~l~~ 151 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSR----VILRQLYAHQAPVHVTKFSPQDNTM----LVSGSDDKVVKYWDLSTAYVQAELSG 151 (487)
T ss_pred CeEEEccCCcCcEEEeccccH----HHHHHHhhccCceeEEEecccCCeE----EEecCCCceEEEEEcCCcEEEEEecC
Confidence 455544 45688888884332 4556689999999999999998876 66999999999999999887667888
Q ss_pred CC--cceEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC
Q 024185 91 RG--RPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 91 ~~--~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 167 (271)
|. +.|.+|+|-. ..+++|+.||.|++||++.... ....+ .|..+|..+.+-|.|..+++++.+ .+++||+-+
T Consensus 152 htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~---~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~ 226 (487)
T KOG0310|consen 152 HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS---RVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTT 226 (487)
T ss_pred CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc---eeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecC
Confidence 86 6679999865 4889999999999999987642 13333 588999999999999999988754 799999986
Q ss_pred Ce-EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 168 GE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 168 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
|. .+..+..|... |+|+++..++..|++++-|+.+++||+.+-+.++.+. ..++|.+++.+|++..++.|- |.+
T Consensus 227 G~qll~~~~~H~Kt--VTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 227 GGQLLTSMFNHNKT--VTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred Cceehhhhhcccce--EEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEeccccee
Confidence 54 44444446655 9999999999999999999999999999999999886 578899999999999988885 555
Q ss_pred EEEcC
Q 024185 245 SFWIP 249 (271)
Q Consensus 245 ~iw~~ 249 (271)
.+=+.
T Consensus 304 ~~rr~ 308 (487)
T KOG0310|consen 304 SIRRR 308 (487)
T ss_pred eeehh
Confidence 54433
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=174.26 Aligned_cols=208 Identities=13% Similarity=0.172 Sum_probs=176.3
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCC
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRS 121 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 121 (271)
-.+.+.++..+|+|.+ ++.|+..|.+++|.+.+|..+..+..| .++|+.|+.||.+|++|+.||.|.+|++..
T Consensus 80 ~Pg~v~al~s~n~G~~-----l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYF-----LLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cccceeeeecCCCceE-----EEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence 3567999999999998 777779999999999999999999877 688999999999999999999999998632
Q ss_pred -----CCCCcceEEEecCCccceEEEEEcCC--CcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCE
Q 024185 122 -----YDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 122 -----~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 194 (271)
....+.....+..|.-+|+++...+. ..++++++.|.++++||+..+..+.++..... +.+++.+|-++.
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s---i~av~lDpae~~ 231 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS---IKAVALDPAERV 231 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc---ceeEEEcccccE
Confidence 11122345567789999999998875 45799999999999999999999888775543 899999999999
Q ss_pred EEEecCCCcEEEEEcCC----------------ceeEEEecCCcc--eeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 195 VVSGSGDGTLHAWNINT----------------RNEVACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
++.|+.+|.|.+.++.. +..+..+.+|.+ .|+|++.+-||.+|++|+ |.+.|||+.+.++
T Consensus 232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 99999999999887643 223456678887 999999999999999998 9999999999877
Q ss_pred CcCCC
Q 024185 255 STDES 259 (271)
Q Consensus 255 ~~~~~ 259 (271)
++...
T Consensus 312 iRtl~ 316 (476)
T KOG0646|consen 312 IRTLQ 316 (476)
T ss_pred HHHHh
Confidence 66554
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-25 Score=161.92 Aligned_cols=210 Identities=12% Similarity=0.154 Sum_probs=175.8
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEec--CCeE
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAME--AGAI 114 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~--d~~i 114 (271)
+.|+.-.+.+.++.|+++|.. +++++.|.++++||..+++.++++..+ ++..++|....+.+..++. |.+|
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~-----litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLL-----LITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccCCCceeEEEecCCCCE-----EEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 346667789999999999999 888899999999999999999999877 6677888777766666655 7899
Q ss_pred EEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCE
Q 024185 115 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 194 (271)
+..++.+.+. ...+.||...|.+++.+|-+..+++++.|++|++||++..++...+.....+ + ++|+|.|-+
T Consensus 83 ryLsl~dNky----lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i--~AfDp~GLi 154 (311)
T KOG1446|consen 83 RYLSLHDNKY----LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--I--AAFDPEGLI 154 (311)
T ss_pred EEEEeecCce----EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--c--eeECCCCcE
Confidence 9999999887 7778999999999999998899999999999999999988887777655544 5 899999999
Q ss_pred EEEecCCCcEEEEEcCCc--eeEEEec---CCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCCCC
Q 024185 195 VVSGSGDGTLHAWNINTR--NEVACWN---GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDESTD 261 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~~--~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~~~ 261 (271)
+|++...+.|++||++.- .+..++. +.....+.+.|||||++++.+. +.+++.|.-+|..+...+..
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~ 228 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGY 228 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeec
Confidence 999998889999999863 3344442 3356789999999999877665 77999999888877666543
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=185.57 Aligned_cols=210 Identities=15% Similarity=0.125 Sum_probs=172.9
Q ss_pred eeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcC-CCCEEEEEec
Q 024185 33 YQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQ-QGLVFAVAME 110 (271)
Q Consensus 33 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~~~ 110 (271)
..+..+..|.+|.+.|-.+.||.++- |++++.|.+|++|++...++++.|.... ++|++|+| |.++|++|+-
T Consensus 357 f~ekP~~ef~GHt~DILDlSWSKn~f------LLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSL 430 (712)
T KOG0283|consen 357 FSEKPFCEFKGHTADILDLSWSKNNF------LLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSL 430 (712)
T ss_pred ccccchhhhhccchhheecccccCCe------eEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccc
Confidence 33445667899999999999998876 6799999999999999999999998775 89999999 6789999999
Q ss_pred CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCC------CCcee
Q 024185 111 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS------PNTNT 184 (271)
Q Consensus 111 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~------~~~v~ 184 (271)
||.++||++...+. .... .-..-|++++|.|||+..++|+.+|.+++|+....+....+..+.. ...|+
T Consensus 431 D~KvRiWsI~d~~V----v~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rIT 505 (712)
T KOG0283|consen 431 DGKVRLWSISDKKV----VDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRIT 505 (712)
T ss_pred ccceEEeecCcCee----Eeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceee
Confidence 99999999998774 3222 2347899999999999999999999999999988776655433221 13599
Q ss_pred eEEECCCCC-EEEEecCCCcEEEEEcCCceeEEEecCCcc--eeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 185 EATFTPDGQ-YVVSGSGDGTLHAWNINTRNEVACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 185 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
.+.|.|... .+++.+.|..|+|+|.++.+++..++++.. .=....|+.||++|++++ ..|++|++....
T Consensus 506 G~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 506 GLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred eeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 999987543 577788899999999999899888876543 234678999999999999 669999985544
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=172.22 Aligned_cols=230 Identities=13% Similarity=0.108 Sum_probs=186.4
Q ss_pred cceeEEeeecceeeEEEEeeccceeeEEE-------------EEc-ccccceEEeeEEecCCchhhhhhhhhhccCceEE
Q 024185 10 ITQALLFARQNIILILLESLCGIYQCMII-------------EFF-ATSKGIRRGLFLSACLQLMIALCLVLLTTALEYG 75 (271)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~ 75 (271)
.....+-+..++.+..++...+....-.+ +.- +.|.+.+.+++.|+|+++ |++|+.|..|.
T Consensus 153 d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgky-----latgg~d~~v~ 227 (479)
T KOG0299|consen 153 DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKY-----LATGGRDRHVQ 227 (479)
T ss_pred cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcE-----EEecCCCceEE
Confidence 33444444668899999988876431111 111 367788999999999999 99999999999
Q ss_pred EEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEE
Q 024185 76 IFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL 153 (271)
Q Consensus 76 iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 153 (271)
||+.++.+.++.+.+|. +.+++|-.....+++++.|+.+++|+++.... ..++-+|++.|..+....-++.+-+
T Consensus 228 Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~----vetlyGHqd~v~~IdaL~reR~vtV 303 (479)
T KOG0299|consen 228 IWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY----VETLYGHQDGVLGIDALSRERCVTV 303 (479)
T ss_pred EecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH----HHHHhCCccceeeechhcccceEEe
Confidence 99999999999999986 55588988888899999999999999998775 6667799999999999888888888
Q ss_pred EecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec-CC-----------
Q 024185 154 TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GN----------- 221 (271)
Q Consensus 154 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~----------- 221 (271)
|+.|.++++|++..... ..+.++... +-|++|-.+ ..+++|+.+|.|.+|++...+++.+.. +|
T Consensus 304 GgrDrT~rlwKi~eesq-lifrg~~~s--idcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~ 379 (479)
T KOG0299|consen 304 GGRDRTVRLWKIPEESQ-LIFRGGEGS--IDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNG 379 (479)
T ss_pred ccccceeEEEeccccce-eeeeCCCCC--eeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCcccccc
Confidence 88999999999954433 345555544 888888644 568999999999999999988887652 12
Q ss_pred cceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 222 IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 222 ~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
+.+|++++..|...++++|+ |.|++|-++.+
T Consensus 380 ~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 380 NFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 24899999999999999998 88999999887
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-27 Score=193.11 Aligned_cols=208 Identities=16% Similarity=0.252 Sum_probs=186.1
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
+..|...+.++..-..++. +++|+.|..+.+|.+.....+..+.+|. +.++.|+++..+|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~-----~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRS-----LVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeecccee-----eccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence 5567778888877666666 8899999999999998777777788885 56799999999999999999999999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEe
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 198 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 198 (271)
++..+. ...+.+|...+.++.|+|-+.+.+.|+.|..+++||.+...+.+.+.+|... +..+.|+|+|++++.|
T Consensus 99 leeAk~----vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v--v~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 99 LEEAKI----VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV--VDVLRLSPDGRWVASG 172 (825)
T ss_pred hhhhhh----hhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcce--eEEEeecCCCceeecc
Confidence 998876 5678899999999999999999999999999999999988888999886654 8889999999999999
Q ss_pred cCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 199 SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 199 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
++|..++|||...|+.+..|..|.+.+..+.|+|..-++++|+ +++++||+++.+.+....
T Consensus 173 ~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK 235 (825)
T ss_pred CCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC
Confidence 9999999999999999999999999999999999999999998 889999999877665554
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=189.14 Aligned_cols=206 Identities=13% Similarity=0.117 Sum_probs=170.4
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhc--cCceEEEEEecC------------cceeEEEecC--CcceEEEcCCCCE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLT--TALEYGIFVLML------------ASFQGILRLR--GRPTVAFDQQGLV 104 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~--~dg~i~iwd~~~------------~~~~~~~~~~--~~~~~~~~~~~~~ 104 (271)
..+++..+..+..+|++.. +++|+ .||.+++|+.+. .+.+.+...| .+.|+.|+|||++
T Consensus 9 v~H~~~~IfSIdv~pdg~~-----~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVK-----FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred cccCCeeEEEEEecCCcee-----EecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCe
Confidence 4566777899999999999 99999 999999998752 1223334444 4788999999999
Q ss_pred EEEEecCCeEEEEeCCCC----------CC----CcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 105 FAVAMEAGAIKLFDSRSY----------DK----GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 105 l~~~~~d~~i~i~d~~~~----------~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
||+|++|+.|.+|+.... .. .......+.+|...|..++|+|++.+|++++.|++|.+||.++.+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~ 163 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL 163 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee
Confidence 999999999999998730 00 1123556789999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc------ceeEEEEEecCCcEEEEeC---
Q 024185 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI------GVVACLKWAPRRAMFVAAS--- 241 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~--- 241 (271)
+.++.+|... |..+.|+|-|+|+++-+.|++|++|.+.+....+.+.++- .....+.|||||.+|++..
T Consensus 164 ~~vl~~H~s~--VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 164 LKVLRGHQSL--VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred eeeeeccccc--ccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 9999999987 9999999999999999999999999988877777665442 3578999999999999984
Q ss_pred ---CeEEEEcCCCCC
Q 024185 242 ---SVLSFWIPNPSS 253 (271)
Q Consensus 242 ---~~v~iw~~~~~~ 253 (271)
.++.|.+-.+.+
T Consensus 242 ~~~~~~~IieR~tWk 256 (942)
T KOG0973|consen 242 GGKSTIAIIERGTWK 256 (942)
T ss_pred CCcceeEEEecCCce
Confidence 347777665554
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-23 Score=149.73 Aligned_cols=206 Identities=13% Similarity=0.167 Sum_probs=166.2
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce-----eEEEecCC--cceEEEcCC----CCEE
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF-----QGILRLRG--RPTVAFDQQ----GLVF 105 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~--~~~~~~~~~----~~~l 105 (271)
+.+.-++|++.+.|.+|||+|+. +++|+.|.+|++.-.+...+ -..+..|. +..++|-.+ +..|
T Consensus 81 ~~kr~khhkgsiyc~~ws~~gel-----iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il 155 (350)
T KOG0641|consen 81 LCKRNKHHKGSIYCTAWSPCGEL-----IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAIL 155 (350)
T ss_pred EeeeccccCccEEEEEecCccCe-----EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEE
Confidence 45556789999999999999999 99999999999975543221 12345554 444787443 3566
Q ss_pred EEEe-cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC----
Q 024185 106 AVAM-EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---- 180 (271)
Q Consensus 106 ~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---- 180 (271)
++++ .|..|++-|...++. ...+.+|.+-|.++ ++-++-.+++|+.|.+|++||++-..++.++......
T Consensus 156 ~s~gagdc~iy~tdc~~g~~----~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gle 230 (350)
T KOG0641|consen 156 ASAGAGDCKIYITDCGRGQG----FHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLE 230 (350)
T ss_pred EecCCCcceEEEeecCCCCc----ceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcc
Confidence 6654 456777778877775 55577999999887 4556788999999999999999988888876533221
Q ss_pred -CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 181 -NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 181 -~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
..|.+++..|.|++|++|..|.+..+||++.++.++.+..|...|.++.|+|.-.++++++ ..|++=|+...
T Consensus 231 ssavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred cceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 5688999999999999999999999999999999999999999999999999999999999 77999998764
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-25 Score=185.94 Aligned_cols=211 Identities=12% Similarity=0.111 Sum_probs=177.5
Q ss_pred EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC------------------cceeEEEecCC--cce
Q 024185 36 MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML------------------ASFQGILRLRG--RPT 95 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~------------------~~~~~~~~~~~--~~~ 95 (271)
..+.....|.+.++|+.|+|||++ ||+|+.|+.|.+|+... .+.+..+.+|. +..
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~-----lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~D 134 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSY-----LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLD 134 (942)
T ss_pred hhheeeccccCceeEEEECCCCCe-----EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccce
Confidence 344557789999999999999999 99999999999998862 12566777785 455
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEee
Q 024185 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS 175 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 175 (271)
++|+|++.+|++++.|++|.+|+..+.+. ...+.+|.+.|..+.|.|-|++||+-+.|++|++|++.+....+.+.
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~----~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It 210 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTFEL----LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT 210 (942)
T ss_pred eccCCCccEEEEecccceEEEEcccccee----eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeec
Confidence 99999999999999999999999999876 77788999999999999999999999999999999988777777665
Q ss_pred cCCC----CCceeeEEECCCCCEEEEecC----CCcEEEEEcCCceeEEEecCCcceeEEEEEecC-----Cc-------
Q 024185 176 LEPS----PNTNTEATFTPDGQYVVSGSG----DGTLHAWNINTRNEVACWNGNIGVVACLKWAPR-----RA------- 235 (271)
Q Consensus 176 ~~~~----~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------- 235 (271)
.+.. ......+.|||||++|++... -..+.|.+-.+.+.-..+-||.+++.++.|+|. ..
T Consensus 211 ~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 211 KPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred cchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCC
Confidence 5433 245788999999999998744 247889998888888999999999999999982 11
Q ss_pred -----EEEEeC--CeEEEEcCCCCCCC
Q 024185 236 -----MFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 236 -----~l~~~~--~~v~iw~~~~~~~~ 255 (271)
.+|+|| ++|.||.....+++
T Consensus 291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred CcceEEEEEecCCccEEEEecCCCCch
Confidence 456666 88999998776654
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=172.76 Aligned_cols=204 Identities=13% Similarity=0.172 Sum_probs=163.7
Q ss_pred ccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc----------eeEEEecCC--cceEEEcCCC-CEEEEE
Q 024185 42 ATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS----------FQGILRLRG--RPTVAFDQQG-LVFAVA 108 (271)
Q Consensus 42 ~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~--~~~~~~~~~~-~~l~~~ 108 (271)
-.|.+.|+.+.+-|+...+ +++.+..+.+.|||..+.. +-..+.+|. ...++|++.. -.|+++
T Consensus 121 i~h~gEVnRaRymPQnp~i----VAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNI----VATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred ccCCccchhhhhCCCCCcE----EEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence 3577888888888988876 5588999999999986432 122566664 4569999865 479999
Q ss_pred ecCCeEEEEeCCCCCCC---cceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECC--CCeEEEEeecCCCCCc
Q 024185 109 MEAGAIKLFDSRSYDKG---PFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAY--GGEKRCGFSLEPSPNT 182 (271)
Q Consensus 109 ~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~ 182 (271)
+.|+.|.+||+...... ......+.+|...|..++|+| +..+|++++.|+.+.|||+| +.++.+....|...
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~-- 274 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE-- 274 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc--
Confidence 99999999999765431 234556789999999999999 56678899999999999999 45555666667665
Q ss_pred eeeEEECCC-CCEEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEEEecCCc-EEEEeC--CeEEEEcCCC
Q 024185 183 NTEATFTPD-GQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 183 v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~~v~iw~~~~ 251 (271)
+.|++|+|- +..||+|+.|++|.+||+++ .++++.+.+|...|.++.|||+.. .||+++ +.+.+||+..
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 999999996 55778899999999999997 456889999999999999999765 666665 7899999966
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-26 Score=186.30 Aligned_cols=220 Identities=14% Similarity=0.195 Sum_probs=174.2
Q ss_pred eEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 13 ALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 13 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
.++++ ..+|.+..|+.-....+ ..+..|..|+..++++.|++....+ |++|+.||+|++||++..+...++.+.
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~rn-k~l~~f~EH~Rs~~~ldfh~tep~i----liSGSQDg~vK~~DlR~~~S~~t~~~n 175 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSIRN-KLLTVFNEHERSANKLDFHSTEPNI----LISGSQDGTVKCWDLRSKKSKSTFRSN 175 (839)
T ss_pred hhheeecCCCcEEEEecCccccc-hhhhHhhhhccceeeeeeccCCccE----EEecCCCceEEEEeeeccccccccccc
Confidence 34444 45788888887664223 3445689999999999999998876 779999999999999998888888765
Q ss_pred --CcceEEEcCC-CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC
Q 024185 92 --GRPTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 168 (271)
Q Consensus 92 --~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 168 (271)
.+..++|+|. +.+|+++.++|.+++||++.... ....+.+|.++|.|+.|+|++.+||+|+.|+.|+|||..+.
T Consensus 176 SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r---~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 176 SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR---CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred chhhhceeeccCCCceEEEecCCceEEEeeccCchh---HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence 3566999994 67899999999999999998763 35567799999999999999999999999999999999876
Q ss_pred eEEEEeecCCCCCceeeEEECCCCCE-EEEecC--CCcEEEEEcCCcee-EEEecCCcceeEEEEEec-CCcEEEEeC
Q 024185 169 EKRCGFSLEPSPNTNTEATFTPDGQY-VVSGSG--DGTLHAWNINTRNE-VACWNGNIGVVACLKWAP-RRAMFVAAS 241 (271)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~--dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 241 (271)
+.......+.. .++.++.|-|...+ |++++. |..|+|||++..-. ..++..|...++.++|.. |...+.+++
T Consensus 253 ~~~~~~tInTi-apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~s 329 (839)
T KOG0269|consen 253 RAKPKHTINTI-APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCS 329 (839)
T ss_pred CccceeEEeec-ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeec
Confidence 54443333332 35889999998664 555544 77899999987554 457788999999999965 445677776
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=183.73 Aligned_cols=193 Identities=15% Similarity=0.259 Sum_probs=154.2
Q ss_pred eeEEecCCchhhhhhhhhhccCceEEEEEecC---cceeEEEecCC--cceEEEcCCC-CEEEEEecCCeEEEEeCCCCC
Q 024185 50 GLFLSACLQLMIALCLVLLTTALEYGIFVLML---ASFQGILRLRG--RPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYD 123 (271)
Q Consensus 50 ~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~--~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~ 123 (271)
.+.|..-...+ +++++..|.|.+||+.. .+.+..|..|+ +.++.|++-. .+|++|++||.|++||++..+
T Consensus 92 DVkW~~~~~Nl----IAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 92 DVKWGQLYSNL----IATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred hcccccchhhh----heeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 35565333332 88999999999999976 45555676675 6669998855 688999999999999999877
Q ss_pred CCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECCCCCEEEEecCC
Q 024185 124 KGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 201 (271)
Q Consensus 124 ~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 201 (271)
. ...+.+....|++++|+| .+..++++...|.+++||+|.. ++...+..|.++ |.++.|+|++.+||+|+.|
T Consensus 168 S----~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp--V~c~nwhPnr~~lATGGRD 241 (839)
T KOG0269|consen 168 S----KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP--VLCLNWHPNREWLATGGRD 241 (839)
T ss_pred c----cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc--eEEEeecCCCceeeecCCC
Confidence 5 445556778899999999 6788999999999999999865 445667788876 9999999999999999999
Q ss_pred CcEEEEEcCCcee--EEEecCCcceeEEEEEecCCc-EEEEeC----CeEEEEcCCCCC
Q 024185 202 GTLHAWNINTRNE--VACWNGNIGVVACLKWAPRRA-MFVAAS----SVLSFWIPNPSS 253 (271)
Q Consensus 202 g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~-~l~~~~----~~v~iw~~~~~~ 253 (271)
+.|+|||+.+++. +.++. ...+|.++.|-|+.. +|++++ -.|+|||++..-
T Consensus 242 K~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred ccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence 9999999986543 33443 356899999999765 677776 449999997643
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=160.10 Aligned_cols=210 Identities=13% Similarity=0.086 Sum_probs=162.6
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC-cceeEE-EecC--CcceEEEcCCCCEEEEEecCCeEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML-ASFQGI-LRLR--GRPTVAFDQQGLVFAVAMEAGAIKL 116 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i 116 (271)
-...++.|.+++|||....+ ++.++.||+||+|+++. |..+-. ...+ .+.+++|+.||..+++|+.|+.+++
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~----~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNL----LAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred CCCcccchheeEeccccCce----EEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEE
Confidence 45677899999999966653 55899999999999986 333221 2233 3556999999999999999999999
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCc--EEEEEecCCeEEEEECCCCeEEEEeecCCC---------------
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK--SMLLTTTNNNIYVLDAYGGEKRCGFSLEPS--------------- 179 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--------------- 179 (271)
||+.+++ ...+..|.++|.++.|-+... .|++||.|++|+.||.|...++.++.....
T Consensus 99 wDL~S~Q-----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVat 173 (347)
T KOG0647|consen 99 WDLASGQ-----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVAT 173 (347)
T ss_pred EEccCCC-----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEe
Confidence 9999987 566778999999999988655 899999999999999998766555442211
Q ss_pred ------------------------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCc--eeEEEecCCc---------ce
Q 024185 180 ------------------------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR--NEVACWNGNI---------GV 224 (271)
Q Consensus 180 ------------------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~---------~~ 224 (271)
.-.+++++..+|....+.|+-+|.+.|..+..+ +.-..++.|. ..
T Consensus 174 a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 174 AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 124677777778777789999999999888776 3344555554 36
Q ss_pred eEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 225 VACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 225 v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
|++++|+|....|++++ |++.+||-+....+...+
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~ 290 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE 290 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhhhhhhccC
Confidence 88999999877788776 999999987766555543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-25 Score=167.10 Aligned_cols=207 Identities=14% Similarity=0.177 Sum_probs=158.8
Q ss_pred ccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC----------------cceeEEEecCC--cceEEEcCCC-
Q 024185 42 ATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML----------------ASFQGILRLRG--RPTVAFDQQG- 102 (271)
Q Consensus 42 ~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~--~~~~~~~~~~- 102 (271)
-+|.+.++.+..++-++-.+ .++-+..|.|+|||+.. .+++.++.+|. .+.++|||-.
T Consensus 148 i~h~g~~NRvr~~~~~~~~~---~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVL---CASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred cccccccceeeecccCCcce---eeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 45666777777777653211 46778999999999842 24566777774 5669999943
Q ss_pred CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEECCCCeEEEE--eecCCC
Q 024185 103 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCG--FSLEPS 179 (271)
Q Consensus 103 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~ 179 (271)
..|++|..-+.|++|...++.. .+....+.+|...|-.++|||. ...|++++.||+|+|||+|.+..... .+.|..
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W-~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~s 303 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSW-KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNS 303 (440)
T ss_pred cccccCccccceEeeeeccCce-eecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCC
Confidence 3588888888999999988764 2223346679999999999995 55788999999999999998843222 245554
Q ss_pred CCceeeEEECCCCCEEEEecCCCcEEEEEcCC---ceeEEEecCCcceeEEEEEecCCc-EEEEeC--CeEEEEcCCCCC
Q 024185 180 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINT---RNEVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 180 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~~v~iw~~~~~~ 253 (271)
.|+-+.|+.+-.+|++|+.||+++|||+++ ++++..++-|..+|+++.|+|... .|++++ ..|.+||+...+
T Consensus 304 --DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 304 --DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred --ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 488899999988999999999999999985 677889999999999999999654 344433 779999997655
Q ss_pred C
Q 024185 254 N 254 (271)
Q Consensus 254 ~ 254 (271)
-
T Consensus 382 D 382 (440)
T KOG0302|consen 382 D 382 (440)
T ss_pred C
Confidence 4
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-26 Score=173.46 Aligned_cols=234 Identities=15% Similarity=0.116 Sum_probs=191.2
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
+..+.+.-+..+..+..|+...+. ......+.+..+.+..+.+.+++.. +++.+.|+.+++|+....+...++
T Consensus 185 ~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~tLaGs~g~it~~d~d~~~~~-----~iAas~d~~~r~Wnvd~~r~~~TL 257 (459)
T KOG0288|consen 185 RNSDTLATGGSDRIIKLWNVLGEK--SELISTLAGSLGNITSIDFDSDNKH-----VIAASNDKNLRLWNVDSLRLRHTL 257 (459)
T ss_pred cCcchhhhcchhhhhhhhhcccch--hhhhhhhhccCCCcceeeecCCCce-----EEeecCCCceeeeeccchhhhhhh
Confidence 333455556667777777776663 3355668888899999999999998 888999999999999999999999
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
.+|. +.++.|......+++|+.|.+|+.||+....+ ...+ -....+.++..+ ...+++|..|++|++||.+
T Consensus 258 sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C----~kt~-l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~R 330 (459)
T KOG0288|consen 258 SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC----SKTV-LPGSQCNDIVCS--ISDVISGHFDKKVRFWDIR 330 (459)
T ss_pred cccccceeeehhhccccceeeccccchhhhhhhhhhhe----eccc-cccccccceEec--ceeeeecccccceEEEecc
Confidence 9985 56678877777799999999999999998654 2221 112455666665 4568899999999999999
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC----cceeEEEEEecCCcEEEEeC-
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN----IGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~- 241 (271)
+..+......+.. |+++..+++|..+.+++.|.++.+.|+++.+..+.+.+. ....+.+.|||++.|+++||
T Consensus 331 s~~~~~sv~~gg~---vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 331 SADKTRSVPLGGR---VTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred CCceeeEeecCcc---eeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC
Confidence 9999888877663 999999999999999999999999999999988877542 23478899999999999998
Q ss_pred -CeEEEEcCCCCCCCcCCC
Q 024185 242 -SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 242 -~~v~iw~~~~~~~~~~~~ 259 (271)
|.|+||+..++++.....
T Consensus 408 dgsv~iW~v~tgKlE~~l~ 426 (459)
T KOG0288|consen 408 DGSVYIWSVFTGKLEKVLS 426 (459)
T ss_pred CCcEEEEEccCceEEEEec
Confidence 899999999999877655
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-25 Score=168.41 Aligned_cols=211 Identities=11% Similarity=0.100 Sum_probs=172.0
Q ss_pred EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc---eeEEEecCC--cceEEEcCCCCEEEEEec
Q 024185 36 MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS---FQGILRLRG--RPTVAFDQQGLVFAVAME 110 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~--~~~~~~~~~~~~l~~~~~ 110 (271)
...+.+..|.+.|.-+.||++|++ ||+++.|.+..+|++.... ..+++.+|. +..+.||||.++|++++.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGky-----LAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~ 289 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKY-----LASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF 289 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCee-----EeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc
Confidence 345668899999999999999999 9999999999999886544 366777775 455999999999999999
Q ss_pred CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECC
Q 024185 111 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 190 (271)
Q Consensus 111 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 190 (271)
+..+.+||+.++.. ...+. .++...+.+++|.|||..+++|+.|+++..||+. |......++-.. ..|.+++.++
T Consensus 290 ~e~~~lwDv~tgd~--~~~y~-~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~-~~v~dlait~ 364 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDL--RHLYP-SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRD-PKVHDLAITY 364 (519)
T ss_pred hHheeeccCCcchh--hhhcc-cCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhccccccc-ceeEEEEEcC
Confidence 99999999999986 22222 2356789999999999999999999999999986 444444443332 2488999999
Q ss_pred CCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 191 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 191 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
||+++++.+.|..|++++..+...+..... ..+|++++.|.|++++++.= ..+++||++..++...
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e~~~dr~lise-~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k 432 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNREARVDRGLISE-EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK 432 (519)
T ss_pred CCcEEEEEecccceeeechhhhhhhccccc-cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence 999999999999999999987766655543 45799999999999877663 8899999997665443
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=160.02 Aligned_cols=208 Identities=12% Similarity=0.167 Sum_probs=161.6
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce------eEEEecCCcceEEEcCCCCEEEEE-e
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF------QGILRLRGRPTVAFDQQGLVFAVA-M 109 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~-~ 109 (271)
.+..+++|.+.|++++|+.+|+. |++++.|+.|++|+++.... .+.++....+.+.|+||.+-++.. .
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~-----lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKK-----LATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCce-----eEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc
Confidence 44567899999999999999999 99999999999999976321 122333345669999998755554 4
Q ss_pred cCCeEEEEeCCCCCC--CcceEEE------ecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCC
Q 024185 110 EAGAIKLFDSRSYDK--GPFDTFL------VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN 181 (271)
Q Consensus 110 ~d~~i~i~d~~~~~~--~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 181 (271)
....+++|.+...+- .+..... ...|.-.+..+-...+++++++++.|..|.+|+++ |+.+..+......
T Consensus 153 ~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~- 230 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS- 230 (420)
T ss_pred cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc-
Confidence 556899998753321 1111111 12355677778888899999999999999999998 8888888766554
Q ss_pred ceeeEEECCCCCEEEEecCCCcEEEEEcC---Cc-----eeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 182 TNTEATFTPDGQYVVSGSGDGTLHAWNIN---TR-----NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 182 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
....+.||+|+++++++..-.+++|.+- .| ..+..+++|.+.|..++|+|+.+.+++.| |+.++||++-
T Consensus 231 -n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 231 -NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred -ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 5668999999999999998899999863 22 23557899999999999999999999999 9999999865
Q ss_pred C
Q 024185 252 S 252 (271)
Q Consensus 252 ~ 252 (271)
.
T Consensus 310 r 310 (420)
T KOG2096|consen 310 R 310 (420)
T ss_pred e
Confidence 3
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-25 Score=162.87 Aligned_cols=212 Identities=15% Similarity=0.190 Sum_probs=181.4
Q ss_pred eeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecC
Q 024185 34 QCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEA 111 (271)
Q Consensus 34 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d 111 (271)
....++.|.+|+..|..++....... +.+++.|.+.+||.+++++++.++.+|. +++++|++.+.++++++.|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi-----~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD 211 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPI-----CGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGD 211 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcc-----eeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCC
Confidence 45667779999999999988877776 6799999999999999999999999984 7789999999999999999
Q ss_pred CeEEEEeC------CCC----------------C--------------CCcceEEEecCCccceEEEEEcCCCcEEEEEe
Q 024185 112 GAIKLFDS------RSY----------------D--------------KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155 (271)
Q Consensus 112 ~~i~i~d~------~~~----------------~--------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 155 (271)
++-+||.. ... + ........+.+|.+.|.+..|-..|+.+++++
T Consensus 212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS 291 (481)
T KOG0300|consen 212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS 291 (481)
T ss_pred cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee
Confidence 99999972 110 0 01123455778999999999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc-eeEEEecCCcceeEEEEEecCC
Q 024185 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRR 234 (271)
Q Consensus 156 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~ 234 (271)
.|.+..+||+++++.+..+.+|... .+.++-+|..+++++.+.|.+.++||++.. ..+..|++|...|++..|.-|.
T Consensus 292 WDRTAnlwDVEtge~v~~LtGHd~E--LtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd 369 (481)
T KOG0300|consen 292 WDRTANLWDVETGEVVNILTGHDSE--LTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD 369 (481)
T ss_pred ccccceeeeeccCceeccccCcchh--ccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC
Confidence 9999999999999999999999987 888899999999999999999999999853 3466789999999999999776
Q ss_pred cEEEEeC--CeEEEEcCCCCC
Q 024185 235 AMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 235 ~~l~~~~--~~v~iw~~~~~~ 253 (271)
+ +++++ .+|++||+++.+
T Consensus 370 ~-vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 370 R-VVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred c-eeecCCCceEEEeeecccc
Confidence 5 66666 789999998754
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=170.28 Aligned_cols=232 Identities=14% Similarity=0.105 Sum_probs=185.0
Q ss_pred eeEEeeecceeeEEEEeeccc-eeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee--EEE
Q 024185 12 QALLFARQNIILILLESLCGI-YQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ--GIL 88 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~ 88 (271)
..-+++...|-+.+|+..... ..+...-......+-+..+.+.|||+. |++|++-.++.|||+....+. ..+
T Consensus 431 trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrt-----LivGGeastlsiWDLAapTprikael 505 (705)
T KOG0639|consen 431 TRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRT-----LIVGGEASTLSIWDLAAPTPRIKAEL 505 (705)
T ss_pred cceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCce-----EEeccccceeeeeeccCCCcchhhhc
Confidence 455666667788888765432 122211112234567888999999998 889999999999999765432 233
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
.... ..+++.+||.+..+++..||.|.|||+.+... ...+++|.+.+.||..++||..|.+|+-|++|+.||++
T Consensus 506 tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~----VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlr 581 (705)
T KOG0639|consen 506 TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL----VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR 581 (705)
T ss_pred CCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee----eecccCCCCCceeEEecCCCceeecCCCccceeehhhh
Confidence 3333 34499999999999999999999999998776 88899999999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
+++.+.... ....|.++..+|++.+++.|-+++.+.+.... +...+.+.-|.+.|.++.|++-|+++++.+ +-+
T Consensus 582 egrqlqqhd---F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlL 657 (705)
T KOG0639|consen 582 EGRQLQQHD---FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL 657 (705)
T ss_pred hhhhhhhhh---hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhh
Confidence 998766543 33459999999999999999999999988864 444556667999999999999999999998 559
Q ss_pred EEEcCCCCCCCc
Q 024185 245 SFWIPNPSSNST 256 (271)
Q Consensus 245 ~iw~~~~~~~~~ 256 (271)
..|.+.-+.-+-
T Consensus 658 nawrtPyGasiF 669 (705)
T KOG0639|consen 658 NAWRTPYGASIF 669 (705)
T ss_pred hhccCcccccee
Confidence 999988776443
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=173.94 Aligned_cols=229 Identities=11% Similarity=0.118 Sum_probs=184.3
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++.+.+++.+.+++......+|.. +..+...+.+++...+ . |++++.+++|..|.+..++.-..+
T Consensus 23 ~~gefi~tcgsdg~ir~~~~~sd~e~P~t---i~~~g~~v~~ia~~s~--~-----f~~~s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 23 PDGEFICTCGSDGDIRKWKTNSDEEEPET---IDISGELVSSIACYSN--H-----FLTGSEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred CCCCEEEEecCCCceEEeecCCcccCCch---hhccCceeEEEeeccc--c-----eEEeeccceEEEeeCCCCCcccee
Confidence 44455666677899999888776444443 2225556665555443 4 889999999999999888755444
Q ss_pred ec--CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RL--RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
.. -...+++++.+|+++|.|+.|-.|++.++.+... ...+.+|.++|.++.|+|.+++||+.+.||.|++||+.
T Consensus 93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~----~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ----EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred eeeeccceEEEEecCCcEEEeecCceeEEEEeccccch----heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 32 2467799999999999999999999999988776 77889999999999999999999999999999999999
Q ss_pred CCeEEEEeecCCC------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecC--CcceeEEEEEecCCcEEE
Q 024185 167 GGEKRCGFSLEPS------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG--NIGVVACLKWAPRRAMFV 238 (271)
Q Consensus 167 ~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~ 238 (271)
++.+..++..-.. ...+..++|+|+|..++..+.|+.|++|+..+++....+.. +...+..+.|+|+|+|||
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence 9877665543211 23467799999988888888899999999999998887743 344589999999999999
Q ss_pred EeC--CeEEEEcCCC
Q 024185 239 AAS--SVLSFWIPNP 251 (271)
Q Consensus 239 ~~~--~~v~iw~~~~ 251 (271)
+++ |.|.|||.++
T Consensus 249 As~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 249 ASTLDGQILVWNVDT 263 (933)
T ss_pred eeccCCcEEEEeccc
Confidence 998 8899999996
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-24 Score=172.09 Aligned_cols=243 Identities=13% Similarity=0.154 Sum_probs=182.0
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEec------CCchhhhhhhhhhccCceEEEEEecCc
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSA------CLQLMIALCLVLLTTALEYGIFVLMLA 82 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~~~~~~l~s~~~dg~i~iwd~~~~ 82 (271)
|.+++|.....+..++.|+...-.. ......+-.|...|..+..-| ....+.-.||++++.|++|++||++.+
T Consensus 334 et~~klscVYndhSlYvWDvrD~~k-vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~c 412 (1080)
T KOG1408|consen 334 ETTDKLSCVYNDHSLYVWDVRDVNK-VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFC 412 (1080)
T ss_pred CCCceEEEEEcCceEEEEecccccc-ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccc
Confidence 4567888888899999999766432 233344556777777665544 222333346899999999999999752
Q ss_pred ceeEE----------------------E----------------e-cCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q 024185 83 SFQGI----------------------L----------------R-LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYD 123 (271)
Q Consensus 83 ~~~~~----------------------~----------------~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 123 (271)
..-.. + . ..++.+++.+|+|++||+|..-|++++|++.+.+
T Consensus 413 tnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~ 492 (1080)
T KOG1408|consen 413 TNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE 492 (1080)
T ss_pred cccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh
Confidence 11000 0 0 0135679999999999999999999999987643
Q ss_pred C--------------------------------Ccce----------EEEecCCccce----------------------
Q 024185 124 K--------------------------------GPFD----------TFLVGGDTAEV---------------------- 139 (271)
Q Consensus 124 ~--------------------------------~~~~----------~~~~~~~~~~v---------------------- 139 (271)
. ..++ ..++.+|...|
T Consensus 493 ~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADks 572 (1080)
T KOG1408|consen 493 YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS 572 (1080)
T ss_pred hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence 2 0000 11122333333
Q ss_pred ---------------------------EEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC-CceeeEEECCC
Q 024185 140 ---------------------------CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-NTNTEATFTPD 191 (271)
Q Consensus 140 ---------------------------~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~ 191 (271)
.+++..|..+++++++.|..|+|||+.+++..+.|++.... +....+...|.
T Consensus 573 imFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS 652 (1080)
T KOG1408|consen 573 IMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS 652 (1080)
T ss_pred hheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCC
Confidence 44444555568899999999999999999999999876544 66778999999
Q ss_pred CCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 192 GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 192 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
|.|+++.+.|.++.++|.-+|+++.++.+|...|+.+.|.+|.++|++.+ |.|.||.+...
T Consensus 653 giY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 653 GIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred ccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 99999999999999999999999999999999999999999999999887 78999998653
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-25 Score=177.40 Aligned_cols=191 Identities=13% Similarity=0.171 Sum_probs=161.0
Q ss_pred hhhhccCceEEEEEecCcc------eeEEEecCCcce--EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc
Q 024185 65 LVLLTTALEYGIFVLMLAS------FQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT 136 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 136 (271)
|.+|+.||.|++|+..... ....++.|..++ +....+++.|++++.|-+|++|+...... .....+..|.
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~--~c~stir~H~ 117 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT--FCMSTIRTHK 117 (735)
T ss_pred EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc--hhHhhhhccc
Confidence 7899999999999886432 255667776444 77888899999999999999999987642 2355677899
Q ss_pred cceEEEEE-cCCCcEEEEEecCCeEEEEECCCCe--EEEEee---------cCCCCCceeeEEECCCCCEEEEecCCCcE
Q 024185 137 AEVCDIKF-SNDGKSMLLTTTNNNIYVLDAYGGE--KRCGFS---------LEPSPNTNTEATFTPDGQYVVSGSGDGTL 204 (271)
Q Consensus 137 ~~v~~~~~-s~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 204 (271)
+.|.|+++ .++..++++|+-|+.|.+||+.++. .+.++. ++. ..+.+++.++.|..+++|+..+.+
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k--~siYSLA~N~t~t~ivsGgtek~l 195 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK--DSIYSLAMNQTGTIIVSGGTEKDL 195 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc--cceeeeecCCcceEEEecCcccce
Confidence 99999999 7788899999999999999999772 333322 222 458899999999999999999999
Q ss_pred EEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 205 HAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 205 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
++||.++++.+..+.+|...|..+..++||+.++++| |+|++||+...+++....
T Consensus 196 r~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 196 RLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred EEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence 9999999999999999999999999999999999998 999999999988876654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-22 Score=157.76 Aligned_cols=227 Identities=11% Similarity=0.082 Sum_probs=164.1
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-CcceE
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-GRPTV 96 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~ 96 (271)
..++.+..++...+ .....+..+.. ...+.++|+++.+ +++++.++.+++||+++++.+..+..+ ....+
T Consensus 50 ~~~~~v~~~d~~~~----~~~~~~~~~~~-~~~~~~~~~g~~l----~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 120 (300)
T TIGR03866 50 SDSDTIQVIDLATG----EVIGTLPSGPD-PELFALHPNGKIL----YIANEDDNLVTVIDIETRKVLAEIPVGVEPEGM 120 (300)
T ss_pred CCCCeEEEEECCCC----cEEEeccCCCC-ccEEEECCCCCEE----EEEcCCCCeEEEEECCCCeEEeEeeCCCCcceE
Confidence 34667777776555 22233433333 4568899999863 345677899999999988877777643 45669
Q ss_pred EEcCCCCEEEEEecCC-eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe-cCCeEEEEECCCCeEEEEe
Q 024185 97 AFDQQGLVFAVAMEAG-AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGF 174 (271)
Q Consensus 97 ~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~ 174 (271)
+|+|+++++++++.++ .+..||.++.+. ..... ......+++|+|+++++++++ .++.+++||+++++.+..+
T Consensus 121 ~~~~dg~~l~~~~~~~~~~~~~d~~~~~~----~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~ 195 (300)
T TIGR03866 121 AVSPDGKIVVNTSETTNMAHFIDTKTYEI----VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKI 195 (300)
T ss_pred EECCCCCEEEEEecCCCeEEEEeCCCCeE----EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeee
Confidence 9999999999988765 567789877653 22221 223457899999999886554 5899999999999877765
Q ss_pred ecCC-----CCCceeeEEECCCCCEEEEe-cCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC---CeEE
Q 024185 175 SLEP-----SPNTNTEATFTPDGQYVVSG-SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLS 245 (271)
Q Consensus 175 ~~~~-----~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~ 245 (271)
..+. .......++|+|++++++.+ +.++.+.+||+++++.+..+. +...+.+++|+|+|++|++++ ++|+
T Consensus 196 ~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 196 TFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVS 274 (300)
T ss_pred eecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEE
Confidence 4321 11123468899999986554 456789999999888876654 345689999999999988763 8899
Q ss_pred EEcCCCCCCCcCCC
Q 024185 246 FWIPNPSSNSTDES 259 (271)
Q Consensus 246 iw~~~~~~~~~~~~ 259 (271)
+||+++++.....+
T Consensus 275 v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 275 VIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCcEEEEEE
Confidence 99999988765544
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=149.91 Aligned_cols=230 Identities=13% Similarity=0.149 Sum_probs=175.6
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEec--CCchhhhhhhhhhccCceEEEEEecCcceeEEE--
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSA--CLQLMIALCLVLLTTALEYGIFVLMLASFQGIL-- 88 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-- 88 (271)
+|..+.+++.+.++....+.. ...+..+.+|.+++..++|.. .|.+ ||+++.||.|.||.-++++-.+..
T Consensus 25 rlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~i-----LAScsYDgkVIiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFGTI-----LASCSYDGKVIIWKEENGRWTKAYEH 98 (299)
T ss_pred eeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccCcE-----eeEeecCceEEEEecCCCchhhhhhh
Confidence 455557788888888766532 245667999999999998854 6677 899999999999999888543332
Q ss_pred ecC--CcceEEEcCC--CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC---C-----------cE
Q 024185 89 RLR--GRPTVAFDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---G-----------KS 150 (271)
Q Consensus 89 ~~~--~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~-----------~~ 150 (271)
..| .+++++|.|. |-.|++++.||.|.+.+.+... ..........|.-.|++++|.|. | +.
T Consensus 99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g-~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC-CccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 334 4777999886 4688999999999999987652 11234445689999999999996 5 57
Q ss_pred EEEEecCCeEEEEECCCCe--EEEEeecCCCCCceeeEEECCCC----CEEEEecCCCcEEEEEcCCc-e--eEEEecCC
Q 024185 151 MLLTTTNNNIYVLDAYGGE--KRCGFSLEPSPNTNTEATFTPDG----QYVVSGSGDGTLHAWNINTR-N--EVACWNGN 221 (271)
Q Consensus 151 l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~-~--~~~~~~~~ 221 (271)
|++|+.|..|++|+..+++ ..+++..|.. .|+.++|.|.- .+++++++||++.||-.+.. + ....+...
T Consensus 178 lvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d--wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f 255 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSDSWKLERTLEGHKD--WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF 255 (299)
T ss_pred eeccCCccceeeeecCCcchhhhhhhhhcch--hhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC
Confidence 9999999999999988763 3344666665 59999999973 47999999999999987621 1 12223345
Q ss_pred cceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 222 IGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 222 ~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
...+..++||+.|++|+.++ +.+.+|.-+.
T Consensus 256 ~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 256 PDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 66799999999999999887 7799997544
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-23 Score=167.97 Aligned_cols=219 Identities=14% Similarity=0.101 Sum_probs=179.9
Q ss_pred EEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-
Q 024185 14 LLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG- 92 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~- 92 (271)
++++..+..+..+..... .....+.+|+..|.++....++. ++||+.|.++++|-. +++...+++|.
T Consensus 74 l~~g~~D~~i~v~~~~~~----~P~~~LkgH~snVC~ls~~~~~~------~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQA----EPLYTLKGHKSNVCSLSIGEDGT------LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eEeecccceEEEEecCCC----CchhhhhccccceeeeecCCcCc------eEecccccceEEecc--hhhhcccCCcch
Confidence 666766777776665544 45566899999999888777776 569999999999976 45555688885
Q ss_pred -cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEE
Q 024185 93 -RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 171 (271)
Q Consensus 93 -~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~ 171 (271)
+++++.-|++ .+++|+.|.+|++|.-. +. ...+.+|.+-|+.+++-+++. +++++.||.|++|++ +|+.+
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~--~~----l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l 212 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGG--TL----LKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVL 212 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCC--ch----hhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCcee
Confidence 5667777777 79999999999999973 33 556779999999999998765 889999999999998 78888
Q ss_pred EEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCC
Q 024185 172 CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPN 250 (271)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~ 250 (271)
..+.+|..- +.+++..+++..++++++|++++||+.. ++.+.+.-....|+++.+-++|.+++.|| |.|+||...
T Consensus 213 ~~~~ghtn~--vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 213 LEMHGHTNF--VYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred eeeeccceE--EEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 888888765 8899988888899999999999999976 77787775556899999999999888888 999999987
Q ss_pred CCCCCcC
Q 024185 251 PSSNSTD 257 (271)
Q Consensus 251 ~~~~~~~ 257 (271)
..+...+
T Consensus 289 k~R~As~ 295 (745)
T KOG0301|consen 289 KDRKASD 295 (745)
T ss_pred ccccCCH
Confidence 6655443
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=149.77 Aligned_cols=217 Identities=12% Similarity=0.136 Sum_probs=171.4
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
..++.+..++.+..++...+.. ..+..|...+.++..++-... +++|+.|++|++||.+.......+...
T Consensus 66 ~~~~~G~~dg~vr~~Dln~~~~-----~~igth~~~i~ci~~~~~~~~-----vIsgsWD~~ik~wD~R~~~~~~~~d~~ 135 (323)
T KOG1036|consen 66 STIVTGGLDGQVRRYDLNTGNE-----DQIGTHDEGIRCIEYSYEVGC-----VISGSWDKTIKFWDPRNKVVVGTFDQG 135 (323)
T ss_pred ceEEEeccCceEEEEEecCCcc-----eeeccCCCceEEEEeeccCCe-----EEEcccCccEEEEeccccccccccccC
Confidence 4666777788888888776632 226788999999999987666 889999999999999875555555443
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC---
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--- 168 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--- 168 (271)
+ .+.+.+-.++.|++|+.+..+.+||+++... ++ ...-..-+-.++|+++.|++.-++.++-||+|.+=.+...
T Consensus 136 k-kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~-~~-q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~ 212 (323)
T KOG1036|consen 136 K-KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDE-PF-QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA 212 (323)
T ss_pred c-eEEEEeccCCEEEEeecCceEEEEEcccccc-hh-hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH
Confidence 3 3445555788999999999999999998764 22 1122233467899999998888999999999887665544
Q ss_pred -eEEEEeecCCCC-------CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEe
Q 024185 169 -EKRCGFSLEPSP-------NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA 240 (271)
Q Consensus 169 -~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 240 (271)
+....|+.|... .+|.+++|+|-...+++|+.||.|.+||+.+.+.+..+......|.+++|+.||..||.+
T Consensus 213 ~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 213 QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred hhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence 334456666442 358899999999999999999999999999999999998877889999999999999998
Q ss_pred C
Q 024185 241 S 241 (271)
Q Consensus 241 ~ 241 (271)
+
T Consensus 293 ~ 293 (323)
T KOG1036|consen 293 S 293 (323)
T ss_pred e
Confidence 6
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-22 Score=162.03 Aligned_cols=230 Identities=12% Similarity=0.087 Sum_probs=187.1
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR- 91 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 91 (271)
.|.++..+|.+..|+...+......+ ..+.+..+.+++|++.++ |.|.+.+|.|.-||+.++++...+...
T Consensus 39 ~lAvsRt~g~IEiwN~~~~w~~~~vi--~g~~drsIE~L~W~e~~R------LFS~g~sg~i~EwDl~~lk~~~~~d~~g 110 (691)
T KOG2048|consen 39 QLAVSRTDGNIEIWNLSNNWFLEPVI--HGPEDRSIESLAWAEGGR------LFSSGLSGSITEWDLHTLKQKYNIDSNG 110 (691)
T ss_pred ceeeeccCCcEEEEccCCCceeeEEE--ecCCCCceeeEEEccCCe------EEeecCCceEEEEecccCceeEEecCCC
Confidence 37788889999999988864443322 235667899999997777 569999999999999999988887654
Q ss_pred -CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 92 -GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 92 -~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
.++.++.+|.+..+++|++||.++.++...++. .....+...++.+.+++|+|++..++.|+.||.|++||..++..
T Consensus 111 g~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I--~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t 188 (691)
T KOG2048|consen 111 GAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI--TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT 188 (691)
T ss_pred cceeEEEeCCccceEEeecCCceEEEEecCCceE--EEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence 467799999999999999999888888877765 33444556678999999999999999999999999999999887
Q ss_pred EEEee-----cCC-CCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--C
Q 024185 171 RCGFS-----LEP-SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--S 242 (271)
Q Consensus 171 ~~~~~-----~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~ 242 (271)
++... ... .+.-|.++.|-.++ .+++|...|+|.+||...+..++.+..|.+.|.+++..+++.++++++ +
T Consensus 189 ~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 189 LHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred EEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCC
Confidence 76221 122 23446667776555 589999999999999999999999999999999999999999999888 7
Q ss_pred eEEEEcCCCCC
Q 024185 243 VLSFWIPNPSS 253 (271)
Q Consensus 243 ~v~iw~~~~~~ 253 (271)
.+.-|...+.+
T Consensus 268 ~ii~~~~~~~~ 278 (691)
T KOG2048|consen 268 KIIQYSLTTNK 278 (691)
T ss_pred ceEEEEecCCc
Confidence 77766665553
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=153.92 Aligned_cols=201 Identities=15% Similarity=0.217 Sum_probs=163.0
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc---ceeEEEecCCcce--EEEcC--CCCEEEEEecCCe
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA---SFQGILRLRGRPT--VAFDQ--QGLVFAVAMEAGA 113 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~--~~~~~--~~~~l~~~~~d~~ 113 (271)
-..|++.|..+...--|+. |++++.|++|+|+..++. +.+.++.+|..++ ++|.. -|.+||+++.||.
T Consensus 7 dt~H~D~IHda~lDyygkr-----lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKR-----LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred hhhhhhhhhHhhhhhhcce-----eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence 4567777777777777777 999999999999999765 4577888997666 88855 6899999999999
Q ss_pred EEEEeCCCCCCCcceEEEecCCccceEEEEEcCC--CcEEEEEecCCeEEEEECCCC-eE--EEEeecCCCCCceeeEEE
Q 024185 114 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGG-EK--RCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 114 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~-~~--~~~~~~~~~~~~v~~~~~ 188 (271)
|.||.-++++. .+......|...|++++|.|. |-.|+.++.||.|.+.+.++. .- .+....|... +++++|
T Consensus 82 VIiWke~~g~w--~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G--vnsVsw 157 (299)
T KOG1332|consen 82 VIIWKEENGRW--TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG--VNSVSW 157 (299)
T ss_pred EEEEecCCCch--hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc--cceeee
Confidence 99999988764 445566789999999999995 667889999999999998754 22 2234445544 899999
Q ss_pred CCC---C-----------CEEEEecCCCcEEEEEcCCce--eEEEecCCcceeEEEEEecCC----cEEEEeC--CeEEE
Q 024185 189 TPD---G-----------QYVVSGSGDGTLHAWNINTRN--EVACWNGNIGVVACLKWAPRR----AMFVAAS--SVLSF 246 (271)
Q Consensus 189 ~~~---~-----------~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~----~~l~~~~--~~v~i 246 (271)
.|- | +.|++|+.|+.|+||+..+++ .-.++.+|...|+.++|.|.- .+|+++| |++.|
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 986 4 579999999999999998753 344589999999999999963 4799998 99999
Q ss_pred EcCC
Q 024185 247 WIPN 250 (271)
Q Consensus 247 w~~~ 250 (271)
|..+
T Consensus 238 wt~~ 241 (299)
T KOG1332|consen 238 WTKD 241 (299)
T ss_pred EEec
Confidence 9876
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-22 Score=163.67 Aligned_cols=241 Identities=16% Similarity=0.162 Sum_probs=189.4
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|.-+-+.+|+.+|+++.++...+ ..+..|+...+.|+.++|..||..+ +++|+..|.+.+||++..+.+..+
T Consensus 212 PaLDVVaiG~~~G~ViifNlK~d----kil~sFk~d~g~VtslSFrtDG~p~----las~~~~G~m~~wDLe~kkl~~v~ 283 (910)
T KOG1539|consen 212 PALDVVAIGLENGTVIIFNLKFD----KILMSFKQDWGRVTSLSFRTDGNPL----LASGRSNGDMAFWDLEKKKLINVT 283 (910)
T ss_pred CcceEEEEeccCceEEEEEcccC----cEEEEEEccccceeEEEeccCCCee----EEeccCCceEEEEEcCCCeeeeee
Confidence 44477889999999999999887 6667788878999999999999885 668899999999999988877666
Q ss_pred e-cC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc-----------------------------
Q 024185 89 R-LR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT----------------------------- 136 (271)
Q Consensus 89 ~-~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~----------------------------- 136 (271)
. .| ++....|-|....+++++.|..+++|-..++.-.|.....-.||.
T Consensus 284 ~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs 363 (910)
T KOG1539|consen 284 RNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFS 363 (910)
T ss_pred eccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhh
Confidence 4 44 345577888888888888888777664332211111111111111
Q ss_pred --------------------------------------------------------------------------------
Q 024185 137 -------------------------------------------------------------------------------- 136 (271)
Q Consensus 137 -------------------------------------------------------------------------------- 136 (271)
T Consensus 364 ~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~ 443 (910)
T KOG1539|consen 364 VISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKR 443 (910)
T ss_pred hhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcc
Confidence
Q ss_pred -----cceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEe---ecCCCCCceeeEEECCCCCEEEEecCCCcEEEEE
Q 024185 137 -----AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF---SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 137 -----~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 208 (271)
..+++++.++-|++.+.|+..|.|.+|++.+|-....+ ..|..+ |+.++.+.-++.+++++.+|.+++||
T Consensus 444 ~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~--V~gla~D~~n~~~vsa~~~Gilkfw~ 521 (910)
T KOG1539|consen 444 FKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE--VTGLAVDGTNRLLVSAGADGILKFWD 521 (910)
T ss_pred ccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc--eeEEEecCCCceEEEccCcceEEEEe
Confidence 45788889999999999999999999999999887777 355554 99999998899999999999999999
Q ss_pred cCCceeEE-----------------------------------------EecCCcceeEEEEEecCCcEEEEeC--CeEE
Q 024185 209 INTRNEVA-----------------------------------------CWNGNIGVVACLKWAPRRAMFVAAS--SVLS 245 (271)
Q Consensus 209 ~~~~~~~~-----------------------------------------~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~ 245 (271)
..+...+. .+.+|...|++++|||||++|++++ ++|+
T Consensus 522 f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr 601 (910)
T KOG1539|consen 522 FKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIR 601 (910)
T ss_pred cCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEE
Confidence 87655322 2348999999999999999999998 8899
Q ss_pred EEcCCCCCCCcCCC
Q 024185 246 FWIPNPSSNSTDES 259 (271)
Q Consensus 246 iw~~~~~~~~~~~~ 259 (271)
+||+.++.++....
T Consensus 602 ~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 602 TWDLPTGTLIDGLL 615 (910)
T ss_pred EEeccCcceeeeEe
Confidence 99999998876553
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-23 Score=151.51 Aligned_cols=203 Identities=15% Similarity=0.215 Sum_probs=160.4
Q ss_pred cccccceEEeeEEecCC-chhhhhhhhhhccCceEEEEEecCcc----------eeEEE-----ecC--CcceEEEcC-C
Q 024185 41 FATSKGIRRGLFLSACL-QLMIALCLVLLTTALEYGIFVLMLAS----------FQGIL-----RLR--GRPTVAFDQ-Q 101 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~----------~~~~~-----~~~--~~~~~~~~~-~ 101 (271)
-..|.+.|+.+.+.+.. ++ +++|+.||.|.+||+++.. .+..+ .+| .+..+.|-| |
T Consensus 39 ~r~HgGsvNsL~id~tegry-----mlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRY-----MLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID 113 (397)
T ss_pred eccCCCccceeeeccccceE-----EeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec
Confidence 45788999999998864 55 7899999999999997542 11111 122 244567777 5
Q ss_pred CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC---CcEEEEEecCCeEEEEECCCCeEEEEeecCC
Q 024185 102 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP 178 (271)
Q Consensus 102 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 178 (271)
...+.+++-|.++++||.++.+. ...+. .++.|.+-+|||- ..++|+|..+-.|++.|+.+|...+++.+|.
T Consensus 114 tGmFtssSFDhtlKVWDtnTlQ~--a~~F~---me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 114 TGMFTSSSFDHTLKVWDTNTLQE--AVDFK---MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred CceeecccccceEEEeeccccee--eEEee---cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 66788889999999999998775 22333 3478999999993 4577888899999999999999999999999
Q ss_pred CCCceeeEEECCCCCEE-EEecCCCcEEEEEcCCc-eeEEE--------------ecCCcceeEEEEEecCCcEEEEeC-
Q 024185 179 SPNTNTEATFTPDGQYV-VSGSGDGTLHAWNINTR-NEVAC--------------WNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 179 ~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~-~~~~~--------------~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
.. |.++.|+|...++ ++|+.||.|++||++.. .+... -..|.+.+++++|+.++.++++++
T Consensus 189 ~~--vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 189 DG--VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred Cc--eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 87 9999999998865 68888999999999753 22222 245778999999999999999998
Q ss_pred -CeEEEEcCCCCCCC
Q 024185 242 -SVLSFWIPNPSSNS 255 (271)
Q Consensus 242 -~~v~iw~~~~~~~~ 255 (271)
..+++|+..+|+..
T Consensus 267 d~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 267 DDRIRVWNMESGRNT 281 (397)
T ss_pred ccceEEeecccCccc
Confidence 77999999888653
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=149.27 Aligned_cols=200 Identities=9% Similarity=0.092 Sum_probs=156.2
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCC
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSR 120 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 120 (271)
.|.-.+..+-...++.+ +++++.|..|.+|+++ |+.++.+.... ....+.||+|+++++++---.|++|.+-
T Consensus 185 kh~v~~i~iGiA~~~k~-----imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~ 258 (420)
T KOG2096|consen 185 KHQVDIINIGIAGNAKY-----IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPI 258 (420)
T ss_pred hcccceEEEeecCCceE-----EEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEE
Confidence 34445555666777777 8899999999999997 88888887653 3448999999999999888889999873
Q ss_pred CCCC----CcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC-------CeEEEEe--ecCCCCCceeeEE
Q 024185 121 SYDK----GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-------GEKRCGF--SLEPSPNTNTEAT 187 (271)
Q Consensus 121 ~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-------~~~~~~~--~~~~~~~~v~~~~ 187 (271)
-.+. +....+.+++|...|..++|||+...+++.+.||++++||..- .+.++.. ..+...+....+.
T Consensus 259 f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~ 338 (420)
T KOG2096|consen 259 FTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLE 338 (420)
T ss_pred eccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEE
Confidence 2221 2234678999999999999999999999999999999999742 1222222 1122222344799
Q ss_pred ECCCCCEEEEecCCCcEEEEEcCCceeEEEe-cCCcceeEEEEEecCCcEEEEeC-CeEEEEcC
Q 024185 188 FTPDGQYVVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS-SVLSFWIP 249 (271)
Q Consensus 188 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~ 249 (271)
++|+|+.|+.+.. ..++++..++++....+ ..|...|.+++|+++|+++++++ ..+++..-
T Consensus 339 lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~n 401 (420)
T KOG2096|consen 339 LSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIRN 401 (420)
T ss_pred eCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeecC
Confidence 9999998876653 47999999998887766 56899999999999999999998 77888763
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-24 Score=156.72 Aligned_cols=209 Identities=14% Similarity=0.083 Sum_probs=179.5
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
-.+|..+|-.++|||-...-+. |++++.|+.-.+-+-++|..+.+|.+|. ++...++.+..+-++++.|-+-++||
T Consensus 10 c~ghtrpvvdl~~s~itp~g~f--lisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYF--LISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred EcCCCcceeEEeccCCCCCceE--EEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 4689999999999875554444 8999999999999999999999999996 45577777777888999999999999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe-EEEEeecCCCCCceeeEEECCCCCEEEE
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
.-++.. ...+ .|..-|..++|+.|.++|++|+.+.-+++||+...+ +...+.+|... |..+.|....+.+++
T Consensus 88 a~tgde----lhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~--Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 88 AVTGDE----LHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG--IRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhh----hhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc--ceeEEEeccCceEEe
Confidence 998875 3333 377889999999999999999999999999997654 34556667665 999999999999999
Q ss_pred ecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCCcCCC
Q 024185 198 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~~~~~ 259 (271)
.++|++|++||.++++.++++. ...+|+++..+++|++|.++. +.|++||..+..+++..+
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k 222 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK 222 (334)
T ss_pred eccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeecc
Confidence 9999999999999999999997 466799999999999999997 889999999988776655
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-24 Score=159.95 Aligned_cols=224 Identities=15% Similarity=0.223 Sum_probs=171.8
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC-----------
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML----------- 81 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~----------- 81 (271)
.++-+..+|.+.+|+.... .....|+.|.+.|..+++.. .. +++++.|.+|+.|-++.
T Consensus 81 ~~aSGs~DG~VkiWnlsqR----~~~~~f~AH~G~V~Gi~v~~--~~-----~~tvgdDKtvK~wk~~~~p~~tilg~s~ 149 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQR----ECIRTFKAHEGLVRGICVTQ--TS-----FFTVGDDKTVKQWKIDGPPLHTILGKSV 149 (433)
T ss_pred hhhccccCceEEEEehhhh----hhhheeecccCceeeEEecc--cc-----eEEecCCcceeeeeccCCcceeeecccc
Confidence 3445567999999998776 44566999999999999987 22 56888888888886321
Q ss_pred ---------------------------cceeEEEec--CCcceEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcceEEE
Q 024185 82 ---------------------------ASFQGILRL--RGRPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFL 131 (271)
Q Consensus 82 ---------------------------~~~~~~~~~--~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 131 (271)
..+++.+.- ..+.++.|+|-. ..|++++.|+.|.+||+++... +....
T Consensus 150 ~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P--l~KVi 227 (433)
T KOG0268|consen 150 YLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP--LKKVI 227 (433)
T ss_pred ccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc--cceee
Confidence 112222221 235668888866 5677788999999999998775 44444
Q ss_pred ecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC
Q 024185 132 VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210 (271)
Q Consensus 132 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 210 (271)
+. ..-..++|+|++-.+.++++|..++.||++.- +++..+..|... |.+++|||.|+-+++|+.|.+|+||..+
T Consensus 228 ~~---mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA--V~dVdfsptG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 228 LT---MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA--VMDVDFSPTGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred ee---ccccceecCccccceeeccccccceehhhhhhcccchhhccccee--EEEeccCCCcchhccccccceEEEeecC
Confidence 33 45677899998888999999999999999864 455666777665 9999999999999999999999999998
Q ss_pred CceeEEEec-CCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 211 TRNEVACWN-GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 211 ~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
.+.....+. .....|.++.||.|.+++++|| ++|++|...-.+.
T Consensus 303 ~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 303 HGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred CCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 776655441 1235699999999999999999 8899998765443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-23 Score=159.54 Aligned_cols=209 Identities=15% Similarity=0.132 Sum_probs=171.8
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec---------Ccc
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM---------LAS 83 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~---------~~~ 83 (271)
.++.+...+.++.|...+| ..+..+..|-..++++.|+.|+.. |++|+.||.|.+|.+. +-+
T Consensus 95 ~l~ag~i~g~lYlWelssG----~LL~v~~aHYQ~ITcL~fs~dgs~-----iiTgskDg~V~vW~l~~lv~a~~~~~~~ 165 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSG----ILLNVLSAHYQSITCLKFSDDGSH-----IITGSKDGAVLVWLLTDLVSADNDHSVK 165 (476)
T ss_pred EEEeecccCcEEEEEeccc----cHHHHHHhhccceeEEEEeCCCcE-----EEecCCCccEEEEEEEeecccccCCCcc
Confidence 3444447899999999999 666668999999999999999999 9999999999999773 235
Q ss_pred eeEEEecCCcce--EEEcC--CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCe
Q 024185 84 FQGILRLRGRPT--VAFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN 159 (271)
Q Consensus 84 ~~~~~~~~~~~~--~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 159 (271)
+...+..|..+. +...+ ...++++++.|.++++||+..+.. +.... .+..+.+++..|.++.++.|+.+|.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L--Llti~---fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL--LLTIT---FPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee--eEEEe---cCCcceeEEEcccccEEEecCCcce
Confidence 677788886444 44443 346899999999999999999876 33333 3478999999999999999999999
Q ss_pred EEEEECCCC----------------eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcc
Q 024185 160 IYVLDAYGG----------------EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG 223 (271)
Q Consensus 160 i~~~d~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 223 (271)
|.+.++... .....+.+|.+...|+|++++-||..|++|+.||.++|||+.+.++++++....+
T Consensus 241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kg 320 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKG 320 (476)
T ss_pred EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcc
Confidence 999887432 2345567777755799999999999999999999999999999999998876788
Q ss_pred eeEEEEEecCCc
Q 024185 224 VVACLKWAPRRA 235 (271)
Q Consensus 224 ~v~~~~~s~~~~ 235 (271)
+|+.+.+.|-.+
T Consensus 321 pVtnL~i~~~~~ 332 (476)
T KOG0646|consen 321 PVTNLQINPLER 332 (476)
T ss_pred ccceeEeecccc
Confidence 999999977544
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=157.79 Aligned_cols=208 Identities=11% Similarity=0.128 Sum_probs=163.0
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcce--EEEcCCCCEEEEEecCCeE
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPT--VAFDQQGLVFAVAMEAGAI 114 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~~i 114 (271)
.+..+.+|.+.|.+++-+|..-.. +++|+.||.|++||+.+..+..+++.|...+ +++.. ..++++++|.+|
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~----~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLST----VASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred chhhccccccccchhhcCcchhhh----hhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcce
Confidence 334468899999999999987332 7899999999999999999999999997444 77665 567888888888
Q ss_pred EEEeCCCCCC------------------------------------CcceEEEecCCccceEEEEEcCCCc-EEEEEecC
Q 024185 115 KLFDSRSYDK------------------------------------GPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTN 157 (271)
Q Consensus 115 ~i~d~~~~~~------------------------------------~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d 157 (271)
+.|.++.... .|+..+.. ..+.+.++.|+|-.. .|++++.|
T Consensus 132 K~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smsw--G~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 132 KQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSW--GADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred eeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeec--CCCceeEEecCCCcchheeeeccC
Confidence 8887443110 01111111 125678889999544 56667789
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc-eeEEEecCCcceeEEEEEecCCcE
Q 024185 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAM 236 (271)
Q Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~ 236 (271)
+.|.+||++++++++.+..... -..++|+|.+--+++|++|..++.+|++.. +++....+|.+.|.+++|||.|+-
T Consensus 210 rsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred CceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch
Confidence 9999999999999888665544 344999998888889999999999999874 456777899999999999999999
Q ss_pred EEEeC--CeEEEEcCCCCCCC
Q 024185 237 FVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 237 l~~~~--~~v~iw~~~~~~~~ 255 (271)
+++|| .+|+||..+.+.-.
T Consensus 287 fvsgsyDksIRIf~~~~~~SR 307 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSR 307 (433)
T ss_pred hccccccceEEEeecCCCcch
Confidence 99999 88999998876543
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-23 Score=159.48 Aligned_cols=209 Identities=12% Similarity=0.153 Sum_probs=174.4
Q ss_pred EEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE-EEe-----------------cC--CcceEE
Q 024185 38 IEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG-ILR-----------------LR--GRPTVA 97 (271)
Q Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~-----------------~~--~~~~~~ 97 (271)
.+.+..|.-.+.+++++|++++ .++++.+++|.-|++.+++... .++ .| .+.+++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~-----~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~a 209 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKR-----VFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLA 209 (479)
T ss_pred ceeeccccCcceEEEeeccccc-----eeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEE
Confidence 4557788899999999999998 8899999999999998876431 111 22 245699
Q ss_pred EcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecC
Q 024185 98 FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 177 (271)
Q Consensus 98 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 177 (271)
.++||++|++|+.|..|.||+.++.+. ...+.+|.+.|.+++|-.....+++++.|.++++|++.....+.++.+|
T Consensus 210 vS~Dgkylatgg~d~~v~Iw~~~t~eh----v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH 285 (479)
T KOG0299|consen 210 VSSDGKYLATGGRDRHVQIWDCDTLEH----VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH 285 (479)
T ss_pred EcCCCcEEEecCCCceEEEecCcccch----hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence 999999999999999999999999886 6668899999999999998889999999999999999988888888888
Q ss_pred CCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 178 PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 178 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
+.. |..+.-..-++.+-+|+.|+++++|++. -+....+.+|.+.+.|++|-.+ ..+++|| |.|.+|++.+.+++
T Consensus 286 qd~--v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 286 QDG--VLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred ccc--eeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCce
Confidence 876 8778777777777778899999999994 3344456788889999999865 4677777 99999999998877
Q ss_pred cCCC
Q 024185 256 TDES 259 (271)
Q Consensus 256 ~~~~ 259 (271)
-...
T Consensus 362 f~~~ 365 (479)
T KOG0299|consen 362 FTSR 365 (479)
T ss_pred eEee
Confidence 6554
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-21 Score=152.03 Aligned_cols=223 Identities=15% Similarity=0.124 Sum_probs=162.4
Q ss_pred eecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-Ccce
Q 024185 17 ARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-GRPT 95 (271)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~ 95 (271)
+..++.+..++...+ .....+..+.. +..+.++|+++.+ +++++.++.+++||..+++....+..+ ....
T Consensus 7 ~~~d~~v~~~d~~t~----~~~~~~~~~~~-~~~l~~~~dg~~l----~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 77 (300)
T TIGR03866 7 NEKDNTISVIDTATL----EVTRTFPVGQR-PRGITLSKDGKLL----YVCASDSDTIQVIDLATGEVIGTLPSGPDPEL 77 (300)
T ss_pred ecCCCEEEEEECCCC----ceEEEEECCCC-CCceEECCCCCEE----EEEECCCCeEEEEECCCCcEEEeccCCCCccE
Confidence 355788888887655 23344554443 5669999999863 346778999999999998887776554 3556
Q ss_pred EEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC-eEEEEECCCCeEEEE
Q 024185 96 VAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-NIYVLDAYGGEKRCG 173 (271)
Q Consensus 96 ~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~~~~ 173 (271)
++|+|+++.++++ +.++.+++||+.+.+. ...+. +...+.+++|+|+|+++++++.++ .+..||.++++....
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~----~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~ 152 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKV----LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN 152 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeE----EeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence 8999999977665 5689999999987653 33332 223468899999999999888764 577889988877665
Q ss_pred eecCCCCCceeeEEECCCCCEEEEe-cCCCcEEEEEcCCceeEEEecCCc-----c--eeEEEEEecCCcEEEEe--C-C
Q 024185 174 FSLEPSPNTNTEATFTPDGQYVVSG-SGDGTLHAWNINTRNEVACWNGNI-----G--VVACLKWAPRRAMFVAA--S-S 242 (271)
Q Consensus 174 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~-----~--~v~~~~~s~~~~~l~~~--~-~ 242 (271)
...... ...++|+|++++++.+ ..++.|++||+++++.+..+..+. . ....++|+|++++++.+ + +
T Consensus 153 ~~~~~~---~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 153 VLVDQR---PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred EEcCCC---ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 433222 5668999999988655 458999999999998877654221 1 23468899999975544 2 6
Q ss_pred eEEEEcCCCCCCCc
Q 024185 243 VLSFWIPNPSSNST 256 (271)
Q Consensus 243 ~v~iw~~~~~~~~~ 256 (271)
.+.+||.++++...
T Consensus 230 ~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 230 RVAVVDAKTYEVLD 243 (300)
T ss_pred eEEEEECCCCcEEE
Confidence 79999998877654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=150.28 Aligned_cols=224 Identities=12% Similarity=0.111 Sum_probs=181.9
Q ss_pred cceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEe----cCc------------
Q 024185 19 QNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVL----MLA------------ 82 (271)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~----~~~------------ 82 (271)
.+....+|....+ ..+..|.+|.+.|+++.|++.+.+ +++++.|++..||.. +..
T Consensus 168 ADhTA~iWs~Esg----~CL~~Y~GH~GSVNsikfh~s~~L-----~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 168 ADHTARIWSLESG----ACLATYTGHTGSVNSIKFHNSGLL-----LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred cccceeEEeeccc----cceeeecccccceeeEEeccccce-----EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 4566667776666 556669999999999999999998 889999999999962 100
Q ss_pred ------------------------ceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc
Q 024185 83 ------------------------SFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT 136 (271)
Q Consensus 83 ------------------------~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 136 (271)
-++..+.+|. +.+..|-..|+.+++++.|.+-.+||+++++. ...+.+|.
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~----v~~LtGHd 314 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEV----VNILTGHD 314 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCce----eccccCcc
Confidence 0222334443 33466777889999999999999999999987 67788999
Q ss_pred cceEEEEEcCCCcEEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCce-e
Q 024185 137 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN-E 214 (271)
Q Consensus 137 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~ 214 (271)
...+.++-+|..+++++++.|.+.++||.+.. ..+..|.+|... |++..|..|.+ +++|++|.+|++||+++.+ +
T Consensus 315 ~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt--VTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsp 391 (481)
T KOG0300|consen 315 SELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT--VTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSP 391 (481)
T ss_pred hhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc--eeEEEEecCCc-eeecCCCceEEEeeeccccCc
Confidence 99999999999999999999999999999843 346678888877 99999988764 8999999999999999754 4
Q ss_pred EEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 215 VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 215 ~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+.++. -.++++.++.+..+..++.-- ..|++||++..++.....
T Consensus 392 lATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 392 LATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR 437 (481)
T ss_pred ceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCc
Confidence 56665 456789999998888888775 679999999988776654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=154.75 Aligned_cols=238 Identities=16% Similarity=0.166 Sum_probs=189.7
Q ss_pred eeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 7 ALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
..|.-+.++.+.-++.+.++..- |..++ .++.+.-...++.+..|.|+|... +++++.....+.||+++.+..+
T Consensus 221 FHp~~plllvaG~d~~lrifqvD-Gk~N~-~lqS~~l~~fPi~~a~f~p~G~~~----i~~s~rrky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 221 FHPTAPLLLVAGLDGTLRIFQVD-GKVNP-KLQSIHLEKFPIQKAEFAPNGHSV----IFTSGRRKYLYSYDLETAKVTK 294 (514)
T ss_pred ecCCCceEEEecCCCcEEEEEec-CccCh-hheeeeeccCccceeeecCCCceE----EEecccceEEEEeecccccccc
Confidence 34555667777777777776654 33333 455566778899999999999832 6689999999999999887544
Q ss_pred EEe--cC---CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEE
Q 024185 87 ILR--LR---GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 161 (271)
Q Consensus 87 ~~~--~~---~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 161 (271)
.-+ ++ .......+|++++|+..+..|.|.+....+++. +..+.+ .+.|..+.|+.|++.|++.+.+|.|+
T Consensus 295 ~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el--i~s~Ki---eG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 295 LKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL--ITSFKI---EGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh--hheeee---ccEEeeEEEecCCcEEEEEcCCceEE
Confidence 332 22 234488899999999999999999999999886 444443 47899999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC------ceeEEEecCCcceeEEEEEecCCc
Q 024185 162 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT------RNEVACWNGNIGVVACLKWAPRRA 235 (271)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~~~~s~~~~ 235 (271)
+||++...+++++..... ..-++++.++++.|+|+|+..|.|.|||..+ .+++..+..-...|+++.|+||..
T Consensus 370 v~nl~~~~~~~rf~D~G~-v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDGS-VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred EEecCCcceEEEEeecCc-cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 999999999999876554 3456788899999999999999999999653 566777776778899999999999
Q ss_pred EEEEeC----CeEEEEcCCCCCCCc
Q 024185 236 MFVAAS----SVLSFWIPNPSSNST 256 (271)
Q Consensus 236 ~l~~~~----~~v~iw~~~~~~~~~ 256 (271)
+||.+| +.+++-.+.+...-+
T Consensus 449 iLAiaS~~~knalrLVHvPS~TVFs 473 (514)
T KOG2055|consen 449 ILAIASRVKKNALRLVHVPSCTVFS 473 (514)
T ss_pred hhhhhhhccccceEEEeccceeeec
Confidence 999998 558888887765544
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=144.88 Aligned_cols=237 Identities=12% Similarity=0.100 Sum_probs=181.7
Q ss_pred EEEeeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc
Q 024185 4 IVFALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS 83 (271)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 83 (271)
+-|+ |..+.|+++.-+|.+..++...... +..-.|..++.+++|.++.. +++|+.||.|+.+|+.++.
T Consensus 19 v~f~-~~~~~LLvssWDgslrlYdv~~~~l-----~~~~~~~~plL~c~F~d~~~------~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 19 VKFS-PSSSDLLVSSWDGSLRLYDVPANSL-----KLKFKHGAPLLDCAFADEST------IVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred EEEc-CcCCcEEEEeccCcEEEEeccchhh-----hhheecCCceeeeeccCCce------EEEeccCceEEEEEecCCc
Confidence 3455 7778899988899999888765511 11224678899999998665 5699999999999999887
Q ss_pred eeEEEec-CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEE
Q 024185 84 FQGILRL-RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 162 (271)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 162 (271)
..+.-.. ..+.|+..++....+++|+.|++|++||.++... ...+. ....|.++..+ |+.|++|+.+..+.+
T Consensus 87 ~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~----~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~i 159 (323)
T KOG1036|consen 87 EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV----VGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLI 159 (323)
T ss_pred ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc----ccccc-cCceEEEEecc--CCEEEEeecCceEEE
Confidence 6544332 3578899998888999999999999999997443 33332 23478777655 678999999999999
Q ss_pred EECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc----eeEEEecCCc---------ceeEEEE
Q 024185 163 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR----NEVACWNGNI---------GVVACLK 229 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~---------~~v~~~~ 229 (271)
||+++...........-...++++++-|++.-.++++-||.|.+=.+... +....|+.|. .+|++++
T Consensus 160 yDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 160 YDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred EEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 99998765443333333355899999999888999999999988777655 4445566663 4799999
Q ss_pred EecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 230 WAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 230 ~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
|+|-...|+||+ |-|.+||+.+.+.+.+..
T Consensus 240 Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~ 271 (323)
T KOG1036|consen 240 FHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA 271 (323)
T ss_pred eccccceEEecCCCceEEEccCcchhhhhhcc
Confidence 999988999998 889999999988776655
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=144.66 Aligned_cols=219 Identities=13% Similarity=0.108 Sum_probs=170.8
Q ss_pred eeEEee-ecceeeEEEEeec-cceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 12 QALLFA-RQNIILILLESLC-GIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 12 ~~l~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
..++.+ .-++.+..|+... +...+ +....|.+++.+++|+.+|.. +++|+.|+.+++||+.+++ ...+.
T Consensus 40 ~~~~~A~SWD~tVR~wevq~~g~~~~---ka~~~~~~PvL~v~Wsddgsk-----Vf~g~~Dk~~k~wDL~S~Q-~~~v~ 110 (347)
T KOG0647|consen 40 DNLLAAGSWDGTVRIWEVQNSGQLVP---KAQQSHDGPVLDVCWSDDGSK-----VFSGGCDKQAKLWDLASGQ-VSQVA 110 (347)
T ss_pred CceEEecccCCceEEEEEecCCcccc---hhhhccCCCeEEEEEccCCce-----EEeeccCCceEEEEccCCC-eeeee
Confidence 334433 3488888888766 33222 346678999999999999988 8899999999999999996 45666
Q ss_pred cCC--cceEEEcCCCC--EEEEEecCCeEEEEeCCCCCCCcceEEEecC-------------------------------
Q 024185 90 LRG--RPTVAFDQQGL--VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG------------------------------- 134 (271)
Q Consensus 90 ~~~--~~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------------------------------- 134 (271)
.|. +.++.|-+... .|++|+.|.+|+.||++.... +....+..
T Consensus 111 ~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p--v~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~t 188 (347)
T KOG0647|consen 111 AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP--VATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPT 188 (347)
T ss_pred ecccceeEEEEecCCCcceeEecccccceeecccCCCCe--eeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcc
Confidence 664 55588876554 899999999999999986443 11111111
Q ss_pred ----C----ccceEEEEEcCCCcEEEEEecCCeEEEEECCCC--eEEEEeecCCCC-------CceeeEEECCCCCEEEE
Q 024185 135 ----D----TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRCGFSLEPSP-------NTNTEATFTPDGQYVVS 197 (271)
Q Consensus 135 ----~----~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~ 197 (271)
+ .-.++|++..+|....+.|+-+|.+.+..+..+ +.-..|+.|... -.|.+++|+|.-..|++
T Consensus 189 e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT 268 (347)
T KOG0647|consen 189 EFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT 268 (347)
T ss_pred hhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence 0 134788998888888899999999999988776 334456666642 24778999999999999
Q ss_pred ecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 198 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
++.||++.+||-.....+++.+.|..+|++.+|+.+|.+++-+-
T Consensus 269 aGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 269 AGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 99999999999988888999899999999999999999998774
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=161.23 Aligned_cols=213 Identities=15% Similarity=0.178 Sum_probs=175.6
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEe-eEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceE
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRG-LFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTV 96 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 96 (271)
..++.+..|+...+.+-+ ...+.++.+-+.. +++.+..+.. +++|+.|+.+.+|...+..+..++.+|..+++
T Consensus 32 sRd~t~~vw~~~~~~~l~--~~~~~~~~g~i~~~i~y~e~~~~~----l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC 105 (745)
T KOG0301|consen 32 SRDGTVKVWAKKGKQYLE--THAFEGPKGFIANSICYAESDKGR----LVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVC 105 (745)
T ss_pred CCCCceeeeeccCccccc--ceecccCcceeeccceeccccCcc----eEeecccceEEEEecCCCCchhhhhcccccee
Confidence 347787777775553222 2456777777766 6666533321 67999999999999999999999999987776
Q ss_pred EEcC--CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEe
Q 024185 97 AFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF 174 (271)
Q Consensus 97 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 174 (271)
+.+- ++. +++|+.|.++++|....- ...+.+|+..|.+++.-|++ .+++|+.|.+|++|.- ++.+++|
T Consensus 106 ~ls~~~~~~-~iSgSWD~TakvW~~~~l------~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf 175 (745)
T KOG0301|consen 106 SLSIGEDGT-LISGSWDSTAKVWRIGEL------VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTF 175 (745)
T ss_pred eeecCCcCc-eEecccccceEEecchhh------hcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhh
Confidence 6653 444 899999999999997653 34488999999999999988 7899999999999974 7888999
Q ss_pred ecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 175 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 175 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
.+|..- |+.+++-+++. +++++.||.|+.|++ +++.+.++.+|..-|.+++..+++..+++++ ++++||+..
T Consensus 176 ~gHtD~--VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 176 SGHTDC--VRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ccchhh--eeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 998876 99999988764 788999999999999 8999999999999999999888888888888 899999976
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-22 Score=150.15 Aligned_cols=229 Identities=14% Similarity=0.168 Sum_probs=166.7
Q ss_pred eEEee-ecceeeEEEEeeccc------------eeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEe
Q 024185 13 ALLFA-RQNIILILLESLCGI------------YQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVL 79 (271)
Q Consensus 13 ~l~~~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~ 79 (271)
.+... ..+|.+.+++..... .....+-.+.+|.+.-..+.|||-..- .+++|..-+.|++|..
T Consensus 166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g----~LlsGDc~~~I~lw~~ 241 (440)
T KOG0302|consen 166 VLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG----RLLSGDCVKGIHLWEP 241 (440)
T ss_pred ceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc----ccccCccccceEeeee
Confidence 33333 346777777643211 112245567888888999999994332 1678889999999999
Q ss_pred cCccee---EEEecCC--cceEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEE
Q 024185 80 MLASFQ---GILRLRG--RPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL 153 (271)
Q Consensus 80 ~~~~~~---~~~~~~~--~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 153 (271)
.++.-. ..+.+|. +.-++|||.. ..|++|+.||+|+|||++.+..++ ....++|.+.|..+.|+.+-.+|++
T Consensus 242 ~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~--~~~~kAh~sDVNVISWnr~~~lLas 319 (440)
T KOG0302|consen 242 STGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA--AVSTKAHNSDVNVISWNRREPLLAS 319 (440)
T ss_pred ccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc--eeEeeccCCceeeEEccCCcceeee
Confidence 887532 2344564 4449999976 588999999999999999885533 4445889999999999998889999
Q ss_pred EecCCeEEEEECCC---CeEEEEeecCCCCCceeeEEECCC-CCEEEEecCCCcEEEEEcCCcee---------------
Q 024185 154 TTTNNNIYVLDAYG---GEKRCGFSLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNE--------------- 214 (271)
Q Consensus 154 ~~~d~~i~~~d~~~---~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~--------------- 214 (271)
|+.||+++|||+|+ ++++..|+.|..+ |+++.|+|. ...+++++.|..|.+||+..-.-
T Consensus 320 G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p--ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dl 397 (440)
T KOG0302|consen 320 GGDDGTLSIWDLRQFKSGQPVATFKYHKAP--ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDL 397 (440)
T ss_pred cCCCceEEEEEhhhccCCCcceeEEeccCC--eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcC
Confidence 99999999999986 5678899999987 999999986 45677888899999999853111
Q ss_pred -EEEecCC--cceeEEEEEecCCc-EEEEeC-CeEEEEcC
Q 024185 215 -VACWNGN--IGVVACLKWAPRRA-MFVAAS-SVLSFWIP 249 (271)
Q Consensus 215 -~~~~~~~--~~~v~~~~~s~~~~-~l~~~~-~~v~iw~~ 249 (271)
.+.+--| ...+..+.|+++-. ++++.+ .-+.||..
T Consensus 398 PpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfkt 437 (440)
T KOG0302|consen 398 PPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFKT 437 (440)
T ss_pred CceeEEEecchhHhhhheeccCCCCeEEEecccceeEEEe
Confidence 1112223 23578899999643 566555 55666643
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.1e-21 Score=153.55 Aligned_cols=218 Identities=14% Similarity=0.185 Sum_probs=176.4
Q ss_pred cceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee-EEEecCC---cceEEEcCCCCEEE
Q 024185 31 GIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ-GILRLRG---RPTVAFDQQGLVFA 106 (271)
Q Consensus 31 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~---~~~~~~~~~~~~l~ 106 (271)
+..+.-+++++.-....|.+++++.+.+. ||.+-.||.|-+|+++.+-.. ..+.++. +..++|++ +.+|+
T Consensus 11 ~~m~vhrcrf~d~~Ps~I~slA~s~kS~~-----lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLF 84 (691)
T KOG2048|consen 11 GKMQVHRCRFVDYKPSEIVSLAYSHKSNQ-----LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLF 84 (691)
T ss_pred ceeEEEEEEEEeeeccceEEEEEeccCCc-----eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEE
Confidence 33444577788888899999999999988 888999999999999876543 4455553 55699994 55578
Q ss_pred EEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeE
Q 024185 107 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA 186 (271)
Q Consensus 107 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~ 186 (271)
+.+.+|.|.-||+.+.+. ...+....+.|.+++.+|.+..++.|+.||.+..++...++...........+.+.++
T Consensus 85 S~g~sg~i~EwDl~~lk~----~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsl 160 (691)
T KOG2048|consen 85 SSGLSGSITEWDLHTLKQ----KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSL 160 (691)
T ss_pred eecCCceEEEEecccCce----eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEE
Confidence 888899999999999886 7777777899999999999999999999998888888888776665444444669999
Q ss_pred EECCCCCEEEEecCCCcEEEEEcCCceeEEEe--------cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCc
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACW--------NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNST 256 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~ 256 (271)
+|+|++..++.|+.||.|++||..++..++.. +....-|+++.|-.++ .|++|+ |+|.+||...+.+..
T Consensus 161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiq 239 (691)
T KOG2048|consen 161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQ 239 (691)
T ss_pred EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhh
Confidence 99999999999999999999999998887722 1123457888888665 577775 999999999998765
Q ss_pred CCC
Q 024185 257 DES 259 (271)
Q Consensus 257 ~~~ 259 (271)
...
T Consensus 240 S~~ 242 (691)
T KOG2048|consen 240 SHS 242 (691)
T ss_pred hhh
Confidence 543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=150.07 Aligned_cols=204 Identities=13% Similarity=0.118 Sum_probs=159.4
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCC
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG 125 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 125 (271)
..++.|++.|.+ +|+|+.||.+.|||+.+...-+.+.+| .+.+++||+||++|++++.|..|.+||+..+..
T Consensus 26 a~~~~Fs~~G~~-----lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~- 99 (405)
T KOG1273|consen 26 AECCQFSRWGDY-----LAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP- 99 (405)
T ss_pred cceEEeccCcce-----eeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc-
Confidence 778999999999 999999999999999998877778776 577799999999999999999999999988764
Q ss_pred cceEEEecC-------Cc-------------------------------------cceEEEEEcCCCcEEEEEecCCeEE
Q 024185 126 PFDTFLVGG-------DT-------------------------------------AEVCDIKFSNDGKSMLLTTTNNNIY 161 (271)
Q Consensus 126 ~~~~~~~~~-------~~-------------------------------------~~v~~~~~s~~~~~l~~~~~d~~i~ 161 (271)
.+...+.. |. ....+..|.+.|+++++|...|.+.
T Consensus 100 -l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll 178 (405)
T KOG1273|consen 100 -LKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL 178 (405)
T ss_pred -eeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence 33333221 00 0011223666788999999999999
Q ss_pred EEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc-------ee--EEEecC--CcceeEEEEE
Q 024185 162 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR-------NE--VACWNG--NIGVVACLKW 230 (271)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~--~~~~~~--~~~~v~~~~~ 230 (271)
++|..+.+++..++.... ..|..+.++..|++++.-+.|+.|+.|+++.- ++ .+.++. ....=.+++|
T Consensus 179 v~~a~t~e~vas~rits~-~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccf 257 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSV-QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCF 257 (405)
T ss_pred EEecchheeeeeeeechh-eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheee
Confidence 999999999988876551 34889999999999999999999999998631 11 111110 1222357889
Q ss_pred ecCCcEEEEeC---CeEEEEcCCCCCCCcCCC
Q 024185 231 APRRAMFVAAS---SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 231 s~~~~~l~~~~---~~v~iw~~~~~~~~~~~~ 259 (271)
|.+|.|++.++ ..++||.-..|.+.+...
T Consensus 258 s~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh 289 (405)
T KOG1273|consen 258 SGDGEYVCAGSARAHALYIWEKSIGSLVKILH 289 (405)
T ss_pred cCCccEEEeccccceeEEEEecCCcceeeeec
Confidence 99999999988 569999999988776554
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=146.17 Aligned_cols=226 Identities=15% Similarity=0.241 Sum_probs=171.3
Q ss_pred eeecceeEEeeecceeeEEEEeeccceeeEEEEEccccc--ceEEeeEEecCCchhhhhhhhhhccCceEEEEEe-cCcc
Q 024185 7 ALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSK--GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVL-MLAS 83 (271)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~ 83 (271)
..|.+...+....+..|.+++.++|.....+ +.+.+.. .+..++.|+|||..+++ +..+.|++||+ +.|+
T Consensus 119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~DGeqlfa------GykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSPDGEQLFA------GYKRCIRVFDTSRPGR 191 (406)
T ss_pred CCCccceeeeccccCceeeeeccccccccch-hhhhhHHhhhhheeEEecCCCCeEee------cccceEEEeeccCCCC
Confidence 3455555666667888999999999665542 1122222 24567999999998533 88899999999 5554
Q ss_pred eeE---EEec-----CC-cceEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEE
Q 024185 84 FQG---ILRL-----RG-RPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL 153 (271)
Q Consensus 84 ~~~---~~~~-----~~-~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 153 (271)
.-. ++.. .+ +.+++|+|-. +.++.++....+-||.-..... ...+.+|.+.|+.+.|.++|+.|++
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p----l~llggh~gGvThL~~~edGn~lfs 267 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP----LQLLGGHGGGVTHLQWCEDGNKLFS 267 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc----eeeecccCCCeeeEEeccCcCeecc
Confidence 211 1111 12 4669999955 5899999988998888777665 6667799999999999999999999
Q ss_pred Eec-CCeEEEEECCCC-eEEEEeecCCC-CCceeeEEECCCCCEEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEE
Q 024185 154 TTT-NNNIYVLDAYGG-EKRCGFSLEPS-PNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLK 229 (271)
Q Consensus 154 ~~~-d~~i~~~d~~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~ 229 (271)
|+. |..|..||+|.. .++..+..|.. .++=.-+...|++++|++|+.||.|++||++. +..+..+..+...++.++
T Consensus 268 GaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvs 347 (406)
T KOG2919|consen 268 GARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVS 347 (406)
T ss_pred cccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccccee
Confidence 987 788999999864 44555655544 22222356689999999999999999999998 777888888999999999
Q ss_pred EecCCcEEEEeCCe
Q 024185 230 WAPRRAMFVAASSV 243 (271)
Q Consensus 230 ~s~~~~~l~~~~~~ 243 (271)
++|--.++++++|.
T Consensus 348 lnP~mpilatssGq 361 (406)
T KOG2919|consen 348 LNPIMPILATSSGQ 361 (406)
T ss_pred cCcccceeeeccCc
Confidence 99998899999866
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=161.55 Aligned_cols=209 Identities=17% Similarity=0.270 Sum_probs=167.2
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG 92 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 92 (271)
.++.+..+..+..+..-.+..+.. +...+-++.+++++.+|++ +|.|+.|-.|++-+..+......+.+|.
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~i----L~Rftlp~r~~~v~g~g~~-----iaagsdD~~vK~~~~~D~s~~~~lrgh~ 138 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTI----LARFTLPIRDLAVSGSGKM-----IAAGSDDTAVKLLNLDDSSQEKVLRGHD 138 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccce----eeeeeccceEEEEecCCcE-----EEeecCceeEEEEeccccchheeecccC
Confidence 455556677777776666644433 3334567889999999999 8899999999999999999899999986
Q ss_pred --cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecC-------C-ccceEEEEEcCCCcEEEEEecCCeEEE
Q 024185 93 --RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG-------D-TAEVCDIKFSNDGKSMLLTTTNNNIYV 162 (271)
Q Consensus 93 --~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------~-~~~v~~~~~s~~~~~l~~~~~d~~i~~ 162 (271)
+.++.|+|++++||+.+.||.|++||++++.. ...+.+ . ...+..++|+|+|..++....|+.|++
T Consensus 139 apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~----~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv 214 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL----SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKV 214 (933)
T ss_pred CceeeeeEcCCCCEEEEEecCceEEEEEcccchh----hhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEE
Confidence 45599999999999999999999999998765 222111 1 345678999999888888899999999
Q ss_pred EECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEE
Q 024185 163 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFV 238 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 238 (271)
|+..+.+....+........+..++|+|+|+|||+++.+|.|.|||..+-+. ......|.+++|.|+.+-+-
T Consensus 215 y~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it 286 (933)
T KOG1274|consen 215 YSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAIT 286 (933)
T ss_pred EccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeE
Confidence 9999998888877666555588999999999999999999999999987222 22346799999999877543
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=161.92 Aligned_cols=195 Identities=15% Similarity=0.218 Sum_probs=167.6
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE---ecCC--cceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL---RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
....+.+++.+++|++ .+.|...|.|-+||+++|-....+ +.|. +..++...-++.+++++.+|.++.||
T Consensus 447 ~~~~~~av~vs~CGNF-----~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~ 521 (910)
T KOG1539|consen 447 DDINATAVCVSFCGNF-----VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWD 521 (910)
T ss_pred cCcceEEEEEeccCce-----EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEe
Confidence 4467889999999998 778899999999999999888888 3554 45577777778899999999999999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEe
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 198 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 198 (271)
..+... .....+ ...+.++.++.....++++..|-.|+++|..+.+.++.|.+|.+. +++++|||||++++++
T Consensus 522 f~~k~l--~~~l~l---~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr--itd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 522 FKKKVL--KKSLRL---GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNR--ITDMTFSPDGRWLISA 594 (910)
T ss_pred cCCcce--eeeecc---CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccc--eeeeEeCCCCcEEEEe
Confidence 987664 333333 356888889988889999999999999999999999999999987 9999999999999999
Q ss_pred cCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCC
Q 024185 199 SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNP 251 (271)
Q Consensus 199 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~ 251 (271)
+.|++|++||+.++.++..+. -..+..++.|+|+|.+||++. ..|++|.-.+
T Consensus 595 smD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred ecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 999999999999999998875 356789999999999999997 5599996543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-21 Score=141.69 Aligned_cols=195 Identities=11% Similarity=0.095 Sum_probs=152.4
Q ss_pred eeEEeeecceeeEEEEeeccce--e--------eE-EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec
Q 024185 12 QALLFARQNIILILLESLCGIY--Q--------CM-IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM 80 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~--~--------~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~ 80 (271)
+.++-+.++|.+..++...... + +. ....-.+|+-.|..+.|-|-..-+ |.+++.|.++++||..
T Consensus 57 rymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm----FtssSFDhtlKVWDtn 132 (397)
T KOG4283|consen 57 RYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM----FTSSSFDHTLKVWDTN 132 (397)
T ss_pred eEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce----eecccccceEEEeecc
Confidence 4566677899999988765431 1 10 112234677788888888876665 5699999999999999
Q ss_pred CcceeEEEecCC-cceEEEcCC---CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcE-EEEEe
Q 024185 81 LASFQGILRLRG-RPTVAFDQQ---GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS-MLLTT 155 (271)
Q Consensus 81 ~~~~~~~~~~~~-~~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~ 155 (271)
+-+....|..++ ++.-+++|- .-++|+|..+-.|++.|+..+.. ...+.+|.+.|.++.|+|...+ |++|+
T Consensus 133 TlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~----sH~LsGHr~~vlaV~Wsp~~e~vLatgs 208 (397)
T KOG4283|consen 133 TLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF----SHTLSGHRDGVLAVEWSPSSEWVLATGS 208 (397)
T ss_pred cceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc----eeeeccccCceEEEEeccCceeEEEecC
Confidence 999888887765 666777774 34788888899999999999997 8889999999999999997766 57889
Q ss_pred cCCeEEEEECCCC-eEEEEeecCC------------CCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee
Q 024185 156 TNNNIYVLDAYGG-EKRCGFSLEP------------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 214 (271)
Q Consensus 156 ~d~~i~~~d~~~~-~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 214 (271)
.||.+++||++.. .+...+..|. ..+.+..++|+.|+.++++++.|..+++|+..+|+.
T Consensus 209 aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 209 ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 9999999999754 3444443332 124588999999999999999999999999887653
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=158.11 Aligned_cols=226 Identities=13% Similarity=0.143 Sum_probs=179.3
Q ss_pred eecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
+|....|+++..-..+.+|+......... ..+....-+-..++.+||.+. .+++..||.|.|||+.+...++.
T Consensus 474 ~pdgrtLivGGeastlsiWDLAapTprik--aeltssapaCyALa~spDakv-----cFsccsdGnI~vwDLhnq~~Vrq 546 (705)
T KOG0639|consen 474 LPDGRTLIVGGEASTLSIWDLAAPTPRIK--AELTSSAPACYALAISPDAKV-----CFSCCSDGNIAVWDLHNQTLVRQ 546 (705)
T ss_pred cCCCceEEeccccceeeeeeccCCCcchh--hhcCCcchhhhhhhcCCccce-----eeeeccCCcEEEEEcccceeeec
Confidence 45556777887777777777765521111 112222234456889999998 67889999999999999999999
Q ss_pred EecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEEC
Q 024185 88 LRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 88 ~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 165 (271)
|++| +..|+.+++||..|.+|+-|.+|+-||++++.. .+... ....|.++.++|++.+++.|-.++.+.+...
T Consensus 547 fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq--lqqhd---F~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 547 FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ--LQQHD---FSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh--hhhhh---hhhhheecccCCCccceeeecccCcEEEEec
Confidence 9998 478899999999999999999999999998875 22222 3478999999999999999999999999886
Q ss_pred CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeCC--e
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS--V 243 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~ 243 (271)
...+ .+.+..|. .-|.++.|.+.|+++++.+.|+.+..|.+.-|..+...+. .+.|.++..|-|.+++++||| .
T Consensus 622 skp~-kyqlhlhe--ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkk 697 (705)
T KOG0639|consen 622 SKPE-KYQLHLHE--SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKK 697 (705)
T ss_pred CCcc-ceeecccc--cEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcc
Confidence 5433 33444444 4599999999999999999999999999999999888864 567999999999999999994 3
Q ss_pred EEEEcC
Q 024185 244 LSFWIP 249 (271)
Q Consensus 244 v~iw~~ 249 (271)
-.+|.+
T Consensus 698 ATVYeV 703 (705)
T KOG0639|consen 698 ATVYEV 703 (705)
T ss_pred eEEEEE
Confidence 666653
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=144.67 Aligned_cols=231 Identities=16% Similarity=0.242 Sum_probs=179.2
Q ss_pred cceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 10 ITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
-...|.+|+.||.++.++..+. ..-+.+.+|..+|.+++||++|+. |++++.|..+.+||+..|.+++.+.
T Consensus 34 ~G~~lAvGc~nG~vvI~D~~T~----~iar~lsaH~~pi~sl~WS~dgr~-----LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 34 WGDYLAVGCANGRVVIYDFDTF----RIARMLSAHVRPITSLCWSRDGRK-----LLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred CcceeeeeccCCcEEEEEcccc----chhhhhhccccceeEEEecCCCCE-----eeeecCCceeEEEeccCCCceeEEE
Confidence 3467889999999999998876 445668999999999999999999 9999999999999998876655432
Q ss_pred cCC------------------------------------------------cceEEEcCCCCEEEEEecCCeEEEEeCCC
Q 024185 90 LRG------------------------------------------------RPTVAFDQQGLVFAVAMEAGAIKLFDSRS 121 (271)
Q Consensus 90 ~~~------------------------------------------------~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 121 (271)
... ..+..|.+.|+++++|...|.+.+||.++
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 110 00122556688999999999999999998
Q ss_pred CCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC-------CeE--EEEeecCCCCCceeeEEECCCC
Q 024185 122 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-------GEK--RCGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-------~~~--~~~~~~~~~~~~v~~~~~~~~~ 192 (271)
.+. ...++... ...|..+.++..|+.|++-+.|..|+.|+++. +++ .+++..--+..+-.+++|+.+|
T Consensus 185 ~e~--vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 185 LEC--VASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred hee--eeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 876 33333322 36789999999999999999999999999862 111 1222221122234568999999
Q ss_pred CEEEEecC-CCcEEEEEcCCceeEEEecCCc-ceeEEEEEecCCcEEEEeC-CeEEEEcCCCC
Q 024185 193 QYVVSGSG-DGTLHAWNINTRNEVACWNGNI-GVVACLKWAPRRAMFVAAS-SVLSFWIPNPS 252 (271)
Q Consensus 193 ~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~ 252 (271)
.|++.++. ...++||.-..|..++.+.|.. .....+.|+|-...+++-. |.+++|....-
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQV 324 (405)
T ss_pred cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEeecc
Confidence 99988775 4679999999999999998877 4567899999988888876 99999987543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-23 Score=173.89 Aligned_cols=232 Identities=13% Similarity=0.102 Sum_probs=181.9
Q ss_pred EEeeecceeeEEEEeecc--ceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE---
Q 024185 14 LLFARQNIILILLESLCG--IYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL--- 88 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--- 88 (271)
+.-+..||.+.+|+...- ......+..+..|++.|..+.|++....+ +|+|+.||.|.|||+.+-+.-..+
T Consensus 83 IaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nl----LASGa~~geI~iWDlnn~~tP~~~~~~ 158 (1049)
T KOG0307|consen 83 IAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNL----LASGADDGEILIWDLNKPETPFTPGSQ 158 (1049)
T ss_pred eeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCce----eeccCCCCcEEEeccCCcCCCCCCCCC
Confidence 344578999999998763 22334566688999999999999988843 889999999999999875543333
Q ss_pred -ecCCcceEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC-cEEEEEecC---CeEEE
Q 024185 89 -RLRGRPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTN---NNIYV 162 (271)
Q Consensus 89 -~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d---~~i~~ 162 (271)
....+.+++|+..- ..|++++.+|.+.|||++..+. +..+...+....+..++|+|+. ..+++++.| -.|.+
T Consensus 159 ~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p--ii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviql 236 (1049)
T KOG0307|consen 159 APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP--IIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQL 236 (1049)
T ss_pred CCcccceEeccchhhhHHhhccCCCCCceeccccCCCc--ccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEe
Confidence 22357789998754 5788889999999999998764 3333333333458899999975 456677664 46999
Q ss_pred EECCCC-eEEEEeecCCCCCceeeEEECCCC-CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCc-EEEE
Q 024185 163 LDAYGG-EKRCGFSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVA 239 (271)
Q Consensus 163 ~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~ 239 (271)
||+|.- .+++.+..|... |.++.|++.+ +++++++.|+.|.+|+..+++.+..+.....++..+.|.|... .+++
T Consensus 237 WDlR~assP~k~~~~H~~G--ilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~ 314 (1049)
T KOG0307|consen 237 WDLRFASSPLKILEGHQRG--ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAA 314 (1049)
T ss_pred ecccccCCchhhhcccccc--eeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhh
Confidence 999864 456677778766 9999999976 8899999999999999999999999998889999999999776 5666
Q ss_pred eC--CeEEEEcCCCCC
Q 024185 240 AS--SVLSFWIPNPSS 253 (271)
Q Consensus 240 ~~--~~v~iw~~~~~~ 253 (271)
++ |.|.||.+.+..
T Consensus 315 asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 315 ASFDGKISIYSLQGTD 330 (1049)
T ss_pred heeccceeeeeeecCC
Confidence 66 999999998765
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.8e-20 Score=130.09 Aligned_cols=205 Identities=16% Similarity=0.185 Sum_probs=162.3
Q ss_pred cccccceEEeeEEecCCchhhhhhhhh-hccCceEEEEEecCcceeEEEecCCcceEE-EcCCCCEEEEEecCCeEEEEe
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVL-LTTALEYGIFVLMLASFQGILRLRGRPTVA-FDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~d~~i~i~d 118 (271)
|.-|.+.+..++|-.+...--.. +++ |..|..|++-|..+|+..+.+.+|....++ ++-++-.+++|++|.+|++||
T Consensus 132 ~nmhdgtirdl~fld~~~s~~~i-l~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwd 210 (350)
T KOG0641|consen 132 FNMHDGTIRDLAFLDDPESGGAI-LASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWD 210 (350)
T ss_pred eeecCCceeeeEEecCCCcCceE-EEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEe
Confidence 66788999999996443211110 344 456888999999999999999999876644 355788999999999999999
Q ss_pred CCCCCCCcceEEEecCC-----ccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 119 SRSYDKGPFDTFLVGGD-----TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
++-... +....-..| ...|.+++..|.|++|++|-.|....+||++.+++++.+..|... |.++.|+|...
T Consensus 211 lrv~~~--v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsad--ir~vrfsp~a~ 286 (350)
T KOG0641|consen 211 LRVNSC--VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSAD--IRCVRFSPGAH 286 (350)
T ss_pred eeccce--eeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccc--eeEEEeCCCce
Confidence 987654 212111112 256999999999999999999999999999999999999877766 99999999999
Q ss_pred EEEEecCCCcEEEEEcCC----ceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 194 YVVSGSGDGTLHAWNINT----RNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 194 ~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
|+++++.|..|++-|+.. .-++.....|...+..+.|+|..--+++.+ .++.+|-++
T Consensus 287 yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 287 YLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999999999999999863 122334567888889999999887777776 789999764
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-21 Score=148.09 Aligned_cols=198 Identities=16% Similarity=0.169 Sum_probs=163.7
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC--cceeEEEecC--CcceEEEcCCCC-EEEEEecCCeEEEEe
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML--ASFQGILRLR--GRPTVAFDQQGL-VFAVAMEAGAIKLFD 118 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~--~~~~~~~~~~~~-~l~~~~~d~~i~i~d 118 (271)
..+.++++.|+|..+. +++++.||+++||.++. ...++.+... .+.+.+|.|+|. .+++++.....+.||
T Consensus 212 s~~~I~sv~FHp~~pl-----llvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPL-----LLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred CcCCceEEEecCCCce-----EEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence 4568999999999998 88999999999998853 3344554433 466699999998 899999999999999
Q ss_pred CCCCCCCcceEEEecCCc-cceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEE
Q 024185 119 SRSYDKGPFDTFLVGGDT-AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
+++.+. .+...+.++. ..+..+..+|++++|+..+..|.|.+....+++.+..++.... +..++|+.||+.|++
T Consensus 287 le~ak~--~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~---v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 287 LETAKV--TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV---VSDFTFSSDSKELLA 361 (514)
T ss_pred cccccc--ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE---EeeEEEecCCcEEEE
Confidence 998875 2233333443 4577889999999999999999999999999999988876544 899999999999999
Q ss_pred ecCCCcEEEEEcCCceeEEEecCCcc-eeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 198 GSGDGTLHAWNINTRNEVACWNGNIG-VVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
++.+|.|.+||++...+++.+....+ .=++++.|+++.+||+|| |-|.|||.++
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred EcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 99999999999999999998864322 225677789999999999 8899999765
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-19 Score=142.05 Aligned_cols=236 Identities=14% Similarity=0.178 Sum_probs=182.2
Q ss_pred EEEEEeeecceeEEeeecceeeEEEEeeccceeeEEEEEccc-ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec
Q 024185 2 VLIVFALPITQALLFARQNIILILLESLCGIYQCMIIEFFAT-SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM 80 (271)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~ 80 (271)
|+.+--+|....+++....+.+..++...+..... ...|+. .+..|.|+.|.++|+ +++|..+|.|.||+..
T Consensus 203 v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~-~~~fek~ekk~Vl~v~F~engd------viTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKR-QGIFEKREKKFVLCVTFLENGD------VITGDSGGNILIWSKG 275 (626)
T ss_pred EEEEEeccCCCcEEEEeCCceEEEEEccCCceEEE-eeccccccceEEEEEEEcCCCC------EEeecCCceEEEEeCC
Confidence 45556678889999999899999997766644433 333443 446889999999999 5699999999999998
Q ss_pred CcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCC---------Ccce---------------------
Q 024185 81 LASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK---------GPFD--------------------- 128 (271)
Q Consensus 81 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~--------------------- 128 (271)
+.+..+....|. +.+++.-.+|.+|- |+.|..|..||-.-.+. ++..
T Consensus 276 ~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~G 354 (626)
T KOG2106|consen 276 TNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQG 354 (626)
T ss_pred CceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEe
Confidence 887776666664 66788888888555 99999999999322111 0000
Q ss_pred ------EEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC
Q 024185 129 ------TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 202 (271)
Q Consensus 129 ------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 202 (271)
.....+|......++.+|+.+++++++.|+.+++|+ ..++..+..... + +.++.|+|.| .++.|+..|
T Consensus 355 t~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d-~--~~~~~fhpsg-~va~Gt~~G 428 (626)
T KOG2106|consen 355 TLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED-P--AECADFHPSG-VVAVGTATG 428 (626)
T ss_pred eecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecC-c--eeEeeccCcc-eEEEeeccc
Confidence 112234667778899999999999999999999999 455555444332 2 7889999999 899999999
Q ss_pred cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 203 TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 203 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
...+.|..+...+..-.. ..+++.++|+|+|.+||.|+ +.|++|.+...
T Consensus 429 ~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 429 RWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred eEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 999999998666665554 88999999999999999999 77999988654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-21 Score=145.01 Aligned_cols=204 Identities=11% Similarity=0.123 Sum_probs=164.5
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc-------ceeEEEecCC--cceEEEcCCC-CEEEEE
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA-------SFQGILRLRG--RPTVAFDQQG-LVFAVA 108 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~--~~~~~~~~~~-~~l~~~ 108 (271)
-.+.+|++.+..+.|+|..+.. +|||+.|.+|.+|++..+ +++..+.+|. +..++|+|.- +.|+++
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~v----IASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCV----IASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred CCccCccccccccccCccCCce----eecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc
Confidence 3478999999999999988875 679999999999998654 3566778886 4459999965 688899
Q ss_pred ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEE
Q 024185 109 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 109 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~ 188 (271)
+.|..|.+|++.+++. ...+. |.+.|.++.|+.||.+|++++.|..|++||.++++.+..-..|.+. .-..+.|
T Consensus 151 g~Dn~v~iWnv~tgea----li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~-k~~Raif 224 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEA----LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA-KPARAIF 224 (472)
T ss_pred cCCceEEEEeccCCce----eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC-CcceeEE
Confidence 9999999999999986 66665 9999999999999999999999999999999999999887777664 3445678
Q ss_pred CCCCCEEEEec---CCCcEEEEEcCCcee---EEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCCCC
Q 024185 189 TPDGQYVVSGS---GDGTLHAWNINTRNE---VACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSS 253 (271)
Q Consensus 189 ~~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~ 253 (271)
-.+|..+-+|. .+..+-+||..+.+. .+++... ..|.-.-|.||..++..++ +.|+.|.+....
T Consensus 225 l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 225 LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eccCceeeeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 78888555553 367899999765433 4455543 3466666788988888776 669999998766
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-21 Score=148.52 Aligned_cols=204 Identities=13% Similarity=0.175 Sum_probs=156.3
Q ss_pred ccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC--CcceEEEcCCC-CEEEEEecCCeEEEEe
Q 024185 42 ATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR--GRPTVAFDQQG-LVFAVAMEAGAIKLFD 118 (271)
Q Consensus 42 ~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~-~~l~~~~~d~~i~i~d 118 (271)
.+|+.++-.++|+..-+.+ ||||+.|.+|++||+.++++..++..| .+.+++|+|.. .+|++|+.|++|.+.|
T Consensus 240 ~gHTdavl~Ls~n~~~~nV----LaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNV----LASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKD 315 (463)
T ss_pred ccchHHHHHHHhcccccee----EEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeee
Confidence 3677778888888777665 789999999999999999999999766 46779999964 7899999999999999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCC-cEEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECCCC-CEE
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDG-QYV 195 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l 195 (271)
.+..... -..+.+ .+.|-.++|.|.. ..++++..||+++-+|+|+. +++.+++.|..+ |.++++++.- .++
T Consensus 316 ~R~~~~s-~~~wk~---~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~--ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 316 CRDPSNS-GKEWKF---DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE--ISGLSVNIQTPGLL 389 (463)
T ss_pred ccCcccc-CceEEe---ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCC--cceEEecCCCCcce
Confidence 9853321 113333 3679999999954 45677788999999999975 889999999987 9999998764 467
Q ss_pred EEecCCCcEEEEEcCCcee--EEEecCCcceeEEEEEecCCcE-EEEeC--CeEEEEcCCCCCCC
Q 024185 196 VSGSGDGTLHAWNINTRNE--VACWNGNIGVVACLKWAPRRAM-FVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 196 ~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~-l~~~~--~~v~iw~~~~~~~~ 255 (271)
++++.|+.+++|++..-.. +..-.-.-+...|.++.|+-.. ++.|+ +.+++||+.+....
T Consensus 390 ~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 390 STASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 8899999999999864333 2221111234567778887654 45555 55999999876543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=140.45 Aligned_cols=188 Identities=15% Similarity=0.188 Sum_probs=146.6
Q ss_pred hhhhccCceEEEEEecCc------------ceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEe
Q 024185 65 LVLLTTALEYGIFVLMLA------------SFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV 132 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 132 (271)
++.|+....|.-+++... .++..++.|....-++.-++.++++|+.|.+|+|||++.... ...+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~q----lg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ----LGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhh----hcce
Confidence 445555555555544311 123344566544444444799999999999999999998765 5556
Q ss_pred cCCccceEEEEEcCCCc--EEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC
Q 024185 133 GGDTAEVCDIKFSNDGK--SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210 (271)
Q Consensus 133 ~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 210 (271)
-.|.+.|+++.|.++-. .|++|+.||.|.+|+....+.+..++.|.+. |+.++.+|.+++.++.+.|+.++.||+-
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~--Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ--VTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc--cceeEecCCCceEEEEcCCceeeeehhh
Confidence 67999999999999765 8999999999999999999999999999987 9999999999999999999999999999
Q ss_pred CceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCCcCCC
Q 024185 211 TRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~~~~~ 259 (271)
+|+.-..+.-. ..-+.+.|+|.|.+++.++ +.|-+|.+++..+..+.+
T Consensus 158 ~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~ 206 (362)
T KOG0294|consen 158 RGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIE 206 (362)
T ss_pred cCccceeeccC-CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhh
Confidence 88876555321 1224589999999777776 889999988876655544
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=133.46 Aligned_cols=203 Identities=11% Similarity=0.192 Sum_probs=153.2
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc----ceeEEEecCCc--ceEEEcC--CCCEEEEEecCC
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA----SFQGILRLRGR--PTVAFDQ--QGLVFAVAMEAG 112 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~--~~~~~~~--~~~~l~~~~~d~ 112 (271)
-.+|.+-+.++.|.+-|+. +|+|+.|++++|||.++. .+....+.|+. ..+.|.+ =|+.+|+++.|+
T Consensus 9 ~s~h~DlihdVs~D~~GRR-----mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRR-----MATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred ccCCcceeeeeeecccCce-----eeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 3568889999999999999 899999999999997543 34455566654 4477754 378999999999
Q ss_pred eEEEEeCCCC-----CCCcceEEEecCCccceEEEEEcCC--CcEEEEEecCCeEEEEECCCCeE---------------
Q 024185 113 AIKLFDSRSY-----DKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEK--------------- 170 (271)
Q Consensus 113 ~i~i~d~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~--------------- 170 (271)
++.||.-... .........+......|++++|.|. |-.+++++.||.++||+..+.-.
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 9999975321 1123445566777889999999994 67789999999999998642100
Q ss_pred ----------------------------------------------------EEEeecCCCCCceeeEEECCC----CCE
Q 024185 171 ----------------------------------------------------RCGFSLEPSPNTNTEATFTPD----GQY 194 (271)
Q Consensus 171 ----------------------------------------------------~~~~~~~~~~~~v~~~~~~~~----~~~ 194 (271)
+.++..+ ...|+.++|.|+ -..
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~--~dpI~di~wAPn~Gr~y~~ 241 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH--TDPIRDISWAPNIGRSYHL 241 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC--CCcceeeeeccccCCceee
Confidence 0001111 235899999997 247
Q ss_pred EEEecCCCcEEEEEcCCc--------------------eeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 195 VVSGSGDGTLHAWNINTR--------------------NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~~--------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
+|+++.|| |+||.++.. +.+..+.+|++.|..+.|.-.|..|++.+ |.||+|...-
T Consensus 242 lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 242 LAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 89999999 999998731 12445688999999999999999999887 9999998644
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=144.69 Aligned_cols=243 Identities=11% Similarity=0.082 Sum_probs=177.4
Q ss_pred eeecce-eE-EeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce
Q 024185 7 ALPITQ-AL-LFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF 84 (271)
Q Consensus 7 ~~~~~~-~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 84 (271)
-+|... ++ +.|...|++-.|+......+...+-.|..|.+.|.++.|+|...-. +++.+.||+|++-|++++..
T Consensus 194 fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~----i~ssSyDGtiR~~D~~~~i~ 269 (498)
T KOG4328|consen 194 FHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQ----IYSSSYDGTIRLQDFEGNIS 269 (498)
T ss_pred ecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhh----eeeeccCceeeeeeecchhh
Confidence 345544 44 4455678999998854444445567789999999999999988764 56999999999999987754
Q ss_pred eEEEec--CC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCe
Q 024185 85 QGILRL--RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNN 159 (271)
Q Consensus 85 ~~~~~~--~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~ 159 (271)
...+.. .. ...+.|+.+...++.+..=|...+||.+++... ...+.-|...|+.++++| ...+|++++.|++
T Consensus 270 e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~---~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T 346 (498)
T KOG4328|consen 270 EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE---YENLRLHKKKITSVALNPVCPWFLATASLDQT 346 (498)
T ss_pred HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc---chhhhhhhcccceeecCCCCchheeecccCcc
Confidence 333333 32 233788888888888877789999999987641 223445778999999999 4567899999999
Q ss_pred EEEEECCCCeEEEE--eecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC----CceeEEEecCCc----c--eeEE
Q 024185 160 IYVLDAYGGEKRCG--FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN----TRNEVACWNGNI----G--VVAC 227 (271)
Q Consensus 160 i~~~d~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~----~--~v~~ 227 (271)
++|||++.-..... +..-.+...|.+..|||++-.|++.+.|..|+|||.. .-.+..++. |. . ....
T Consensus 347 ~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fK 425 (498)
T KOG4328|consen 347 AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFK 425 (498)
T ss_pred eeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchh
Confidence 99999986432221 2222222349999999998889999999999999983 233333332 22 1 2346
Q ss_pred EEEecCCcEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 228 LKWAPRRAMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 228 ~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
..|.|+..++++|. ..|-|+|.+.++...+
T Consensus 426 A~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 426 AAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred heeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence 68999999999997 7799999999885444
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=150.98 Aligned_cols=124 Identities=15% Similarity=0.292 Sum_probs=106.5
Q ss_pred cceEEEEEcC-CCcEEEEEecCCeEEEEECCCC-------eEEEEeecCCCCCceeeEEECCC-CCEEEEecCCCcEEEE
Q 024185 137 AEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGG-------EKRCGFSLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAW 207 (271)
Q Consensus 137 ~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw 207 (271)
..|+++.|.| |...|++++.||.|++|.+..+ ++...+..|... |+++.|+|- ...|++++.|-+|++|
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK--I~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK--ITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce--EEEEEecchhhhHhhhhhccceeeee
Confidence 4588899999 8889999999999999998653 334556777766 999999996 4578899999999999
Q ss_pred EcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCCCCC
Q 024185 208 NINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDESTDP 262 (271)
Q Consensus 208 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~~~~ 262 (271)
|+++++....+.+|.+.|.+++|||+|+.+++.+ |++++|+.++++..-.+...|
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gp 762 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGP 762 (1012)
T ss_pred ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCC
Confidence 9999999999999999999999999999999998 899999999887665554444
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-18 Score=137.67 Aligned_cols=219 Identities=11% Similarity=0.104 Sum_probs=163.6
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc--c-----
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA--S----- 83 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~----- 83 (271)
+..++-+-++|.+.+|..-.. ...+....|++.|.++..-.+|. |+||+.|+.|..||-.-. +
T Consensus 257 ngdviTgDS~G~i~Iw~~~~~----~~~k~~~aH~ggv~~L~~lr~Gt------llSGgKDRki~~Wd~~y~k~r~~elP 326 (626)
T KOG2106|consen 257 NGDVITGDSGGNILIWSKGTN----RISKQVHAHDGGVFSLCMLRDGT------LLSGGKDRKIILWDDNYRKLRETELP 326 (626)
T ss_pred CCCEEeecCCceEEEEeCCCc----eEEeEeeecCCceEEEEEecCcc------EeecCccceEEeccccccccccccCc
Confidence 355667778899988887443 22222338999999999999999 457999999999983210 0
Q ss_pred ----eeE-----------------------------EEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcce
Q 024185 84 ----FQG-----------------------------ILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD 128 (271)
Q Consensus 84 ----~~~-----------------------------~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 128 (271)
.++ ...+| +.+.++.+|+.+.+++++.|+.+++|+ ..+.
T Consensus 327 e~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~---- 400 (626)
T KOG2106|consen 327 EQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL---- 400 (626)
T ss_pred hhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce----
Confidence 000 01222 234588899999999999999999999 3332
Q ss_pred EEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEE
Q 024185 129 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 129 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 208 (271)
.+.. --..++.|+.|+|.| .+|.|...|...+.|.++...+..-.. . .+++.+.|+|+|.+||.|+.|+.|++|-
T Consensus 401 ~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~--~~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 401 EWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-N--EQLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred eEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-C--CceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 2221 124789999999999 899999999999999988655544333 3 4499999999999999999999999999
Q ss_pred cCCcee-EEEe-cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 209 INTRNE-VACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 209 ~~~~~~-~~~~-~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
+..+.. .... ..+.++|+.+.||+|++++.+-+ -.|..|...
T Consensus 476 Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 476 VSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred ECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 876443 3333 33458999999999999999998 348899443
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-20 Score=142.96 Aligned_cols=183 Identities=14% Similarity=0.174 Sum_probs=141.3
Q ss_pred hhhhccCceEEEEEecCcc---eeEEE------------------ecCC--cceEEEcCCC-CEEEEEecCCeEEEEeCC
Q 024185 65 LVLLTTALEYGIFVLMLAS---FQGIL------------------RLRG--RPTVAFDQQG-LVFAVAMEAGAIKLFDSR 120 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~---~~~~~------------------~~~~--~~~~~~~~~~-~~l~~~~~d~~i~i~d~~ 120 (271)
+|.|+.|..|.|||+.-.. +..++ .+|. +-.++|+.+- +.||+|+.|.+|++||+.
T Consensus 195 vAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~ 274 (463)
T KOG0270|consen 195 VAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVD 274 (463)
T ss_pred EEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcC
Confidence 7899999999999985211 11111 1232 2236666543 589999999999999999
Q ss_pred CCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCCCeE-EEEeecCCCCCceeeEEECCCCC-EEEE
Q 024185 121 SYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEK-RCGFSLEPSPNTNTEATFTPDGQ-YVVS 197 (271)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 197 (271)
+++. ...+..|.+.|.+++|+| ....|++|+.|+++.+.|.|.... -..++.. +.|..++|.|... .+++
T Consensus 275 ~g~p----~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~---g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 275 TGKP----KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD---GEVEKVAWDPHSENSFFV 347 (463)
T ss_pred CCCc----ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec---cceEEEEecCCCceeEEE
Confidence 9997 666778999999999999 577899999999999999985222 1223222 2388899998754 5667
Q ss_pred ecCCCcEEEEEcCCc-eeEEEecCCcceeEEEEEecCCc-EEEEeC--CeEEEEcCCCCCC
Q 024185 198 GSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~~v~iw~~~~~~~ 254 (271)
+..||+++-+|+|+. +++.++.+|.++|.++++++.-. ++++++ +.+++|++.....
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 788999999999975 89999999999999999998654 667776 8899999977554
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=134.31 Aligned_cols=189 Identities=15% Similarity=0.261 Sum_probs=147.7
Q ss_pred cCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-------CcceEEEcCCCCEEEEEecCCeEEEEeCC-CCCCCc
Q 024185 55 ACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-------GRPTVAFDQQGLVFAVAMEAGAIKLFDSR-SYDKGP 126 (271)
Q Consensus 55 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~ 126 (271)
|+..+ +++.+.+.-|++||.-+|+....++.- ...+++|+|||..|++|. +..|+++|+. .+...+
T Consensus 121 P~t~l-----~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 121 PSTNL-----FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCP 194 (406)
T ss_pred Cccce-----eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCc
Confidence 55555 788899999999999999988888653 234599999999998876 6799999994 333211
Q ss_pred ceEEE---ecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-C
Q 024185 127 FDTFL---VGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-D 201 (271)
Q Consensus 127 ~~~~~---~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d 201 (271)
..... -.+..+-+.|++|+| +.+.++.++...++-||.-..++++..+.+|.+. |+.++|+++|+.|++|.. |
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG--vThL~~~edGn~lfsGaRk~ 272 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG--VTHLQWCEDGNKLFSGARKD 272 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC--eeeEEeccCcCeecccccCC
Confidence 11111 112356789999999 5668999999989999988888888888877766 999999999999999987 6
Q ss_pred CcEEEEEcCC-ceeEEEecCCcc-eeEEE--EEecCCcEEEEeC--CeEEEEcCCC
Q 024185 202 GTLHAWNINT-RNEVACWNGNIG-VVACL--KWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 202 g~i~iwd~~~-~~~~~~~~~~~~-~v~~~--~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
..|..||++. +.++..+..|.+ .=..+ ...|++++|++|+ |.|++||+++
T Consensus 273 dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 273 DKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred CeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 7899999985 556677766654 22333 4578899999997 9999999987
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=139.47 Aligned_cols=226 Identities=12% Similarity=0.109 Sum_probs=165.5
Q ss_pred EEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe---c
Q 024185 14 LLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR---L 90 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~ 90 (271)
++.+..-|.+..++...+ .....+.+|.+.|+.+.+.|....+ +++++.|..|++||+++..++..+- +
T Consensus 108 la~~G~~GvIrVid~~~~----~~~~~~~ghG~sINeik~~p~~~ql----vls~SkD~svRlwnI~~~~Cv~VfGG~eg 179 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSG----QCSKNYRGHGGSINEIKFHPDRPQL----VLSASKDHSVRLWNIQTDVCVAVFGGVEG 179 (385)
T ss_pred EEeecceeEEEEEecchh----hhccceeccCccchhhhcCCCCCcE----EEEecCCceEEEEeccCCeEEEEeccccc
Confidence 344445677778887777 4556689999999999999998664 6799999999999999999999884 4
Q ss_pred CC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCC----------------C-------cceEE-EecCCccceEEEEE
Q 024185 91 RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK----------------G-------PFDTF-LVGGDTAEVCDIKF 144 (271)
Q Consensus 91 ~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----------------~-------~~~~~-~~~~~~~~v~~~~~ 144 (271)
|. +.++.|+++|.+|++++.|.++++|++...+. . ++..+ +..-|...|.|+.|
T Consensus 180 HrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw 259 (385)
T KOG1034|consen 180 HRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW 259 (385)
T ss_pred ccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH
Confidence 53 56699999999999999999999999984221 0 01111 12346667777777
Q ss_pred cCCCcEEEEEecCCeEEEEECC-CCe-------------EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC
Q 024185 145 SNDGKSMLLTTTNNNIYVLDAY-GGE-------------KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210 (271)
Q Consensus 145 s~~~~~l~~~~~d~~i~~~d~~-~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 210 (271)
- |+++++-+.++.|..|... -++ .+..+.......+....+|+|-++.|+.|...|.+.+||++
T Consensus 260 ~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~ 337 (385)
T KOG1034|consen 260 F--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLD 337 (385)
T ss_pred H--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECC
Confidence 6 4788888889999999761 111 12233333333334446677889999999999999999999
Q ss_pred CceeEE--Eec--CCcceeEEEEEecCCcEEEEeC--CeEEEEcC
Q 024185 211 TRNEVA--CWN--GNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 211 ~~~~~~--~~~--~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
..++.. ++. .....|...+|+.||.+|+..+ +.|--||.
T Consensus 338 ~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 338 NNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 876632 222 2245799999999999877766 66776764
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-20 Score=143.94 Aligned_cols=194 Identities=11% Similarity=0.103 Sum_probs=153.9
Q ss_pred EeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCc
Q 024185 49 RGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP 126 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 126 (271)
.|++......+ +++|+..+.|+|||++...+.+.+++|. +.++.++....+||+++..|.|.+..+.++..
T Consensus 83 ~Cv~~~s~S~y-----~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-- 155 (673)
T KOG4378|consen 83 FCVACASQSLY-----EISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-- 155 (673)
T ss_pred HHHhhhhccee-----eeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc--
Confidence 34444444455 7899999999999999777777788875 66789999999999999999999999988775
Q ss_pred ceEEEecC-CccceEEEEEcCCCcE-EEEEecCCeEEEEECCCCeEEEEe-ecCCCCCceeeEEECCCC-CEEEEecCCC
Q 024185 127 FDTFLVGG-DTAEVCDIKFSNDGKS-MLLTTTNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDG-QYVVSGSGDG 202 (271)
Q Consensus 127 ~~~~~~~~-~~~~v~~~~~s~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~dg 202 (271)
...+.- ....|+-+.|+|..+. |.+++.+|.|.+||+....+...+ ..|..+ ...++|+|.. .++++.+.|.
T Consensus 156 --tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP--~~gicfspsne~l~vsVG~Dk 231 (673)
T KOG4378|consen 156 --TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP--CRGICFSPSNEALLVSVGYDK 231 (673)
T ss_pred --ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC--cCcceecCCccceEEEecccc
Confidence 333322 2356778999997665 457788999999999876666553 445554 7789999965 5778899999
Q ss_pred cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 203 TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 203 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
.|.+||.+..+....+. ...+.+.++|+++|.+|+.|+ |.|..||++..+.
T Consensus 232 ki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 232 KINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred eEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 99999999877777664 456789999999999999997 9999999987653
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-20 Score=147.41 Aligned_cols=214 Identities=12% Similarity=0.165 Sum_probs=171.6
Q ss_pred EcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC--------cceeEEEecCCcc--eEEEcCCCCEEEEEe
Q 024185 40 FFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML--------ASFQGILRLRGRP--TVAFDQQGLVFAVAM 109 (271)
Q Consensus 40 ~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~~--~~~~~~~~~~l~~~~ 109 (271)
.+..|...+..+.+.|.... |++++.||++++|+++. -+++.+|.+|..+ |+++.+++..+++|+
T Consensus 289 tl~s~~d~ir~l~~~~sep~-----lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPV-----LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred eeecchhhhhhhhcCCCCCe-----EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 46678888888999998888 89999999999999932 2467788898755 588899999999999
Q ss_pred cCCeEEEEeCCCCC------CCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecC------
Q 024185 110 EAGAIKLFDSRSYD------KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE------ 177 (271)
Q Consensus 110 ~d~~i~i~d~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------ 177 (271)
.||+|+.|++.... -.....-.+.||.+.+..+++|+....|++++.||++++|+.....+ .++...
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P 442 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP 442 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence 99999999665211 01122345779999999999999999999999999999998654332 111100
Q ss_pred ---------------------------------------C--CC---CceeeEEECCCCCEEEEecCCCcEEEEEcCCce
Q 024185 178 ---------------------------------------P--SP---NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 213 (271)
Q Consensus 178 ---------------------------------------~--~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 213 (271)
. .+ ..+..+.++|...+.+++..|+.|+++|..+++
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 0 00 235557788888899999999999999999999
Q ss_pred eEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 214 EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 214 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+++....|...++++++.|+|.+|++++ +.+++|.+....+..+..
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred cchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence 9999999999999999999999999998 889999997766655443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-21 Score=163.94 Aligned_cols=211 Identities=12% Similarity=0.176 Sum_probs=163.2
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC---cc---eeEEEecCC--cceEEEcCCCC-EEEEEecCCeEE
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML---AS---FQGILRLRG--RPTVAFDQQGL-VFAVAMEAGAIK 115 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~---~~~~~~~~~--~~~~~~~~~~~-~l~~~~~d~~i~ 115 (271)
..+.+.++|.+.+..--.. ++.|.+||.|.+||... +. .+.+...|. +..+.|++... .||+|+.||.|.
T Consensus 64 ~~rF~kL~W~~~g~~~~Gl-IaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGL-IAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred cccceeeeecccCCCccce-eeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 4567789998877652221 67889999999999865 22 344455554 45599999765 999999999999
Q ss_pred EEeCCCCCCCcceEEEe--cCCccceEEEEEcCC-CcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCC
Q 024185 116 LFDSRSYDKGPFDTFLV--GGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 192 (271)
|||+.+.+. .+.. ....+.|.+++|+.. ...|++++.+|++.+||++..+.+-.+..+.....+..+.|+|+.
T Consensus 143 iWDlnn~~t----P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 143 IWDLNKPET----PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred EeccCCcCC----CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCC
Confidence 999998664 2222 224578999999984 556788889999999999999888777766665668889999985
Q ss_pred -CEEEEecCC---CcEEEEEcCC-ceeEEEecCCcceeEEEEEecCC-cEEEEeC--CeEEEEcCCCCCCCcCCCC
Q 024185 193 -QYVVSGSGD---GTLHAWNINT-RNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSSNSTDEST 260 (271)
Q Consensus 193 -~~l~~~~~d---g~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~~v~iw~~~~~~~~~~~~~ 260 (271)
..++++++| -.|.+||++. ..+++.+++|...|.+++|++.+ ++|++++ +.+.+|+.++++.+.+..+
T Consensus 219 aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 356666554 3699999986 44567788999999999999966 7788877 8899999999988877654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=146.72 Aligned_cols=240 Identities=14% Similarity=0.164 Sum_probs=169.1
Q ss_pred ecceeEE-eeecceeeEEEEeecccee--eEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee
Q 024185 9 PITQALL-FARQNIILILLESLCGIYQ--CMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ 85 (271)
Q Consensus 9 ~~~~~l~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 85 (271)
|..+++| ++.++|.+.+++....... +..+..+..|.++|..+.|.|.... |++++.|.++++||+++.+..
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~-----lVsasGDsT~r~Wdvk~s~l~ 135 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESL-----LVSASGDSTIRPWDVKTSRLV 135 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCcee-----EEEccCCceeeeeeeccceee
Confidence 3344444 4567899999887665433 2234667889999999999995555 889999999999999998877
Q ss_pred EE--EecCC--cceEEEcCCC-CEEEEEecCCeEEEEeCCCCCC---------------C---cce-----EEEecCCcc
Q 024185 86 GI--LRLRG--RPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDK---------------G---PFD-----TFLVGGDTA 137 (271)
Q Consensus 86 ~~--~~~~~--~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~---------------~---~~~-----~~~~~~~~~ 137 (271)
.. +.+|. +..++|.|.. ..|++|+.||.|.|||++.... . +.. ...-.++..
T Consensus 136 G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ 215 (720)
T KOG0321|consen 136 GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASN 215 (720)
T ss_pred cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccC
Confidence 66 67775 5569999965 5889999999999999875331 0 000 111122334
Q ss_pred ceEE---EEEcCCCcEEEEEec-CCeEEEEECCCCeEEEE------eecCCC---CCceeeEEECCCCCEEEEecCCCcE
Q 024185 138 EVCD---IKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCG------FSLEPS---PNTNTEATFTPDGQYVVSGSGDGTL 204 (271)
Q Consensus 138 ~v~~---~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~------~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i 204 (271)
.|.+ +.+..|...||+++. |+.|++||++....... ...+.. ...+.++..+..|.+|++.+.|+.|
T Consensus 216 ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sI 295 (720)
T KOG0321|consen 216 TIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSI 295 (720)
T ss_pred ceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcE
Confidence 4555 566778888999887 99999999987543222 111111 2347778888889999988889999
Q ss_pred EEEEcCCce--eEEEecCCcce--eEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 205 HAWNINTRN--EVACWNGNIGV--VACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 205 ~iwd~~~~~--~~~~~~~~~~~--v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
+.|++.+-. ++..+.++... -..-..+||+.++++|+ ....+|.+.+-.
T Consensus 296 y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 296 YFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred EEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 999998633 34444443221 11224689999999998 779999987754
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.4e-20 Score=137.11 Aligned_cols=227 Identities=11% Similarity=0.162 Sum_probs=160.9
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecC-CchhhhhhhhhhccCceEEEEEecCcceeEEE--
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSAC-LQLMIALCLVLLTTALEYGIFVLMLASFQGIL-- 88 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-- 88 (271)
..++++++++.+..++..++ ..++.|.++...++.+.|..+ +... +.+++.||+|++||++.......+
T Consensus 41 ~~vav~lSngsv~lyd~~tg----~~l~~fk~~~~~~N~vrf~~~ds~h~----v~s~ssDG~Vr~wD~Rs~~e~a~~~~ 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG----QLLEEFKGPPATTNGVRFISCDSPHG----VISCSSDGTVRLWDIRSQAESARISW 112 (376)
T ss_pred eeEEEEecCCeEEEEeccch----hhhheecCCCCcccceEEecCCCCCe----eEEeccCCeEEEEEeecchhhhheec
Confidence 45888899999999999887 566679999999999998774 3332 669999999999999987655444
Q ss_pred ecCC-c--ceEEEcCCCCEEEEEe----cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeE
Q 024185 89 RLRG-R--PTVAFDQQGLVFAVAM----EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNI 160 (271)
Q Consensus 89 ~~~~-~--~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i 160 (271)
..+. . .+++.+..++.+++|. .+-.|.+||++..+. + ...-...|.+.|++++|+| +.+.|++||.||-+
T Consensus 113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-~-l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ-L-LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc-h-hhhhhhhccCcceeEEecCCCCCeEEeecccceE
Confidence 3333 2 2355555777888874 356899999998764 1 1223467999999999999 67889999999999
Q ss_pred EEEECCCCeE----EEEeecCCCCCceeeEEECCCC-CEEEEecCCCcEEEEEcCCceeE--------------------
Q 024185 161 YVLDAYGGEK----RCGFSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRNEV-------------------- 215 (271)
Q Consensus 161 ~~~d~~~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~-------------------- 215 (271)
.+||+..... +.+++ +. ..|.++.|..++ +.+.+-+..++..+|++..+.+.
T Consensus 191 nlfD~~~d~EeDaL~~viN-~~--sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~d 267 (376)
T KOG1188|consen 191 NLFDTKKDNEEDALLHVIN-HG--SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCD 267 (376)
T ss_pred EeeecCCCcchhhHHHhhc-cc--ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhh
Confidence 9999865421 22222 22 237777777665 34666666677777776543321
Q ss_pred -----------------------------------------EEecC-CcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 216 -----------------------------------------ACWNG-NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 216 -----------------------------------------~~~~~-~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
..+.+ |..-|+++.|...+.++.+|+ |.+.+|..+.
T Consensus 268 Y~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 268 YVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred heeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 11222 445566777777788999998 8899998533
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=142.17 Aligned_cols=202 Identities=13% Similarity=0.197 Sum_probs=164.0
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC---Ccc
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR---GRP 94 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~ 94 (271)
..++.+.+|+.... ...+.+++|+..|.++.++-...+ +|+++..|.|.+..+.++.....|... .+.
T Consensus 98 G~~~~Vkiwdl~~k----l~hr~lkdh~stvt~v~YN~~Dey-----iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR 168 (673)
T KOG4378|consen 98 GQSGCVKIWDLRAK----LIHRFLKDHQSTVTYVDYNNTDEY-----IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR 168 (673)
T ss_pred CcCceeeehhhHHH----HHhhhccCCcceeEEEEecCCcce-----eEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence 34566666665544 455678999999999999999998 899999999999999998877777544 345
Q ss_pred eEEEcCCCCE-EEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEECCCCeEEE
Q 024185 95 TVAFDQQGLV-FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRC 172 (271)
Q Consensus 95 ~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~ 172 (271)
.+.++|..+. |.+++++|.|.+||+..... + ......|..+...++|+|. ..+|++.+.|..|.+||.+..+...
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp--~-~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--I-FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCc--c-cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence 5899998874 56779999999999987664 2 2234679999999999994 5567788999999999999777666
Q ss_pred EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEEEecCC
Q 024185 173 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRR 234 (271)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~ 234 (271)
.+.. ..+ ...++|+++|.+|+.|+..|.|..||++. ..++..+..|...|++++|-|..
T Consensus 246 ~l~y-~~P--lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 246 RLTY-SHP--LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eeee-cCC--cceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 6553 333 78899999999999999999999999986 55678888999999999998765
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-19 Score=143.71 Aligned_cols=237 Identities=14% Similarity=0.148 Sum_probs=166.8
Q ss_pred eeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-------
Q 024185 12 QALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS------- 83 (271)
Q Consensus 12 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------- 83 (271)
+.+++. ..+..+..|+...+.... .+.+-+|.+.+.+++|.|....+ |++|+.||.+.|||++-..
T Consensus 112 e~~lVsasGDsT~r~Wdvk~s~l~G--~~~~~GH~~SvkS~cf~~~n~~v----F~tGgRDg~illWD~R~n~~d~~e~~ 185 (720)
T KOG0321|consen 112 ESLLVSASGDSTIRPWDVKTSRLVG--GRLNLGHTGSVKSECFMPTNPAV----FCTGGRDGEILLWDCRCNGVDALEEF 185 (720)
T ss_pred ceeEEEccCCceeeeeeeccceeec--ceeecccccccchhhhccCCCcc----eeeccCCCcEEEEEEeccchhhHHHH
Confidence 334444 556778888887763322 23588999999999999999876 6699999999999985321
Q ss_pred -------------eeEEE-------ecCC--cce---EEEcCCCCEEEEEec-CCeEEEEeCCCCCC----CcceEEEec
Q 024185 84 -------------FQGIL-------RLRG--RPT---VAFDQQGLVFAVAME-AGAIKLFDSRSYDK----GPFDTFLVG 133 (271)
Q Consensus 84 -------------~~~~~-------~~~~--~~~---~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~----~~~~~~~~~ 133 (271)
+.+.+ ..+. +.. +-+..|+..||+++. |+.|++||++.... ++.....+.
T Consensus 186 ~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~ 265 (720)
T KOG0321|consen 186 DNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYP 265 (720)
T ss_pred hhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCcc
Confidence 00000 1111 112 455678899999877 99999999987543 222233333
Q ss_pred CC---ccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe--EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEE
Q 024185 134 GD---TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE--KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 134 ~~---~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 208 (271)
-| .-.+.++.....|.+|++.+.|+.|++||+.+.. ++..+.++.....-..-..+||+.++++|+.|...++|.
T Consensus 266 t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 266 THSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred CcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeee
Confidence 33 3457777777788999988889999999997643 333444443333333456789999999999999999999
Q ss_pred cCCcee-EEEecCCcceeEEEEEecCC-cEEEEeC--CeEEEEcCCCCCC
Q 024185 209 INTRNE-VACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 209 ~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~~v~iw~~~~~~~ 254 (271)
+.+.+. ...+.+|...|++++|.|.. .-+++++ ..+++|++..+-.
T Consensus 346 vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 346 VSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred ecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence 987654 45668999999999998842 2355556 6799999966543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=138.09 Aligned_cols=195 Identities=10% Similarity=0.037 Sum_probs=145.2
Q ss_pred EeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCc
Q 024185 49 RGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP 126 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 126 (271)
.+++++++|.. +++++.||++|+|++.+...+.....| ++..+.|+|||++|++-+.| ..++|+.+++..
T Consensus 148 k~vaf~~~gs~-----latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-- 219 (398)
T KOG0771|consen 148 KVVAFNGDGSK-----LATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-- 219 (398)
T ss_pred eEEEEcCCCCE-----eeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch--
Confidence 67899999998 899999999999998777766665544 46779999999999999988 899999998843
Q ss_pred ceEEEecCCccceEEEEEcCCC---cEEE--EEecCCeEEEEECCCCeE---EEEeecCCCCCceeeEEECCCCCEEEEe
Q 024185 127 FDTFLVGGDTAEVCDIKFSNDG---KSML--LTTTNNNIYVLDAYGGEK---RCGFSLEPSPNTNTEATFTPDGQYVVSG 198 (271)
Q Consensus 127 ~~~~~~~~~~~~v~~~~~s~~~---~~l~--~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 198 (271)
+..............+.|+.|+ .+++ ....-+.|..||+...+. ++..+.-.....+.+++.++||++++.|
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 2222222334456778888877 3333 334456677776643221 1111111111249999999999999999
Q ss_pred cCCCcEEEEEcCCceeEEEe-cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 199 SGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 199 ~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
+.||.|-|++..+.+.++-. +.|...|+.+.|+||.+++++.+ ....+..+.-
T Consensus 300 T~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999988887755 67999999999999999998876 5566666544
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=139.45 Aligned_cols=206 Identities=12% Similarity=0.138 Sum_probs=159.0
Q ss_pred EEEEcccccceEEeeEEecCCc-hhhhhhhhhhccCceEEEEEecCc----ceeEEEecCC--cceEEEcCCC-CEEEEE
Q 024185 37 IIEFFATSKGIRRGLFLSACLQ-LMIALCLVLLTTALEYGIFVLMLA----SFQGILRLRG--RPTVAFDQQG-LVFAVA 108 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~-~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~--~~~~~~~~~~-~~l~~~ 108 (271)
....++.+.+++.+++|+|... .+ +++|+.-|+|-+||+.+. ..+..+..|+ +.++.|+|.. ..+++.
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~l----va~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKL----VAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ecceeEecccceEEEEecccCcceE----EEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 3445667889999999999887 43 669999999999999532 2344555664 5669999965 689999
Q ss_pred ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE-EEEeecCCCCCceeeEE
Q 024185 109 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-RCGFSLEPSPNTNTEAT 187 (271)
Q Consensus 109 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~ 187 (271)
+.||+|+.-|+++..... ...+......+..+.|+.+...++++..=|...+||++++.. ...+..|... |.+++
T Consensus 254 SyDGtiR~~D~~~~i~e~--v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK--I~sv~ 329 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEE--VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK--ITSVA 329 (498)
T ss_pred ccCceeeeeeecchhhHH--HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc--cceee
Confidence 999999999998765421 333333456788899999888888888877999999998765 4445566654 99999
Q ss_pred ECCCC-CEEEEecCCCcEEEEEcCCcee----EEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 188 FTPDG-QYVVSGSGDGTLHAWNINTRNE----VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 188 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
++|-. .++++++.|++.+|||++.-.. +.....|...|.+..|||.+-.|++.+ +.|+|||..
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 99975 4788999999999999986322 223346899999999999876688777 889999983
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-19 Score=143.46 Aligned_cols=210 Identities=15% Similarity=0.140 Sum_probs=155.9
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
+-+|...+.+++.+|+++.++..|=.+--....|++|+..+-..++.+.+|. ++.++||||+++|++.+.|.++.+|.
T Consensus 521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence 4578899999999999999333222222234579999999888888899997 45599999999999999999999999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC--eEEEEeecCCCCCceeeEEECCC-----
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRCGFSLEPSPNTNTEATFTPD----- 191 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~v~~~~~~~~----- 191 (271)
........+.....+.|..-|.+..|+|++++++++|+|.+|++|..... +.+..+........|+.+++.|-
T Consensus 601 ~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~ 680 (764)
T KOG1063|consen 601 VQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEK 680 (764)
T ss_pred eecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccc
Confidence 86654322333337789999999999999999999999999999998776 44443322233345888888763
Q ss_pred CCEEEEecCCCcEEEEEcCC-------cee-----EEEecCCcceeEEEEEecC----------CcEEEEeC--CeEEEE
Q 024185 192 GQYVVSGSGDGTLHAWNINT-------RNE-----VACWNGNIGVVACLKWAPR----------RAMFVAAS--SVLSFW 247 (271)
Q Consensus 192 ~~~l~~~~~dg~i~iwd~~~-------~~~-----~~~~~~~~~~v~~~~~s~~----------~~~l~~~~--~~v~iw 247 (271)
+..++.|-+.|.|.+|.... +.. .....+|...|+.+.|.|- ...|++|+ .+++++
T Consensus 681 ~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~ 760 (764)
T KOG1063|consen 681 GDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIF 760 (764)
T ss_pred cceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEe
Confidence 23678888899999998651 111 1112356778999999975 12457776 679998
Q ss_pred cCC
Q 024185 248 IPN 250 (271)
Q Consensus 248 ~~~ 250 (271)
+..
T Consensus 761 nv~ 763 (764)
T KOG1063|consen 761 NVD 763 (764)
T ss_pred ecc
Confidence 764
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.6e-18 Score=127.40 Aligned_cols=183 Identities=13% Similarity=0.237 Sum_probs=145.2
Q ss_pred hhhhccCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEec-CCccceEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG-GDTAEVCDI 142 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~ 142 (271)
+++...-+.+++.+.+.+..+..+... ++-++.+ +-++|+++-.+ .|+|||+++.+. +...... .+...+.++
T Consensus 61 iV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~Vrm--Nr~RLvV~Lee-~IyIydI~~Mkl--LhTI~t~~~n~~gl~Al 135 (391)
T KOG2110|consen 61 IVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRM--NRKRLVVCLEE-SIYIYDIKDMKL--LHTIETTPPNPKGLCAL 135 (391)
T ss_pred EEecCCCceEEEEEcccCceEEEEecCCceEEEEE--ccceEEEEEcc-cEEEEeccccee--ehhhhccCCCccceEee
Confidence 445544567889999888877766544 4555555 45567777654 499999999876 3333322 456668888
Q ss_pred EEcCCCcEEEEEec--CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCc-EEEEEcCCceeEEEec
Q 024185 143 KFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT-LHAWNINTRNEVACWN 219 (271)
Q Consensus 143 ~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~ 219 (271)
+.++++.+++.-+. .|.|.+||+.+-+.+..+..|.++ +.+++|+|+|.+||++++.|+ |+++.+.+|+.+++|+
T Consensus 136 S~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~--lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR 213 (391)
T KOG2110|consen 136 SPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP--LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR 213 (391)
T ss_pred ccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc--eeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence 88888889987643 789999999999999999999887 999999999999999999886 8999999999999986
Q ss_pred CC--cceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 220 GN--IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 220 ~~--~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
.. ...|.+++|+|++.+|++.| ++|++|.++....
T Consensus 214 RG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~ 252 (391)
T KOG2110|consen 214 RGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSN 252 (391)
T ss_pred CCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccccc
Confidence 43 24688999999999999887 8899999987663
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-17 Score=136.07 Aligned_cols=229 Identities=11% Similarity=0.120 Sum_probs=174.3
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-----
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS----- 83 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----- 83 (271)
|..+.++++. +..+..++...| ..++.+++|++.|.+++++.+|+. |+||+.|..|.+|+.+-..
T Consensus 22 PDGsqL~lAA-g~rlliyD~ndG----~llqtLKgHKDtVycVAys~dGkr-----FASG~aDK~VI~W~~klEG~LkYS 91 (1081)
T KOG1538|consen 22 PDGTQLILAA-GSRLLVYDTSDG----TLLQPLKGHKDTVYCVAYAKDGKR-----FASGSADKSVIIWTSKLEGILKYS 91 (1081)
T ss_pred CCCceEEEec-CCEEEEEeCCCc----ccccccccccceEEEEEEccCCce-----eccCCCceeEEEecccccceeeec
Confidence 4445555555 667888888888 777889999999999999999999 9999999999999764211
Q ss_pred ---eeEEE---------------------------ecC----CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceE
Q 024185 84 ---FQGIL---------------------------RLR----GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT 129 (271)
Q Consensus 84 ---~~~~~---------------------------~~~----~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 129 (271)
.++-. ..+ .+.+++|..||++++.|..||+|.+-+-...+. ...
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek--~~I 169 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK--VKI 169 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc--eEE
Confidence 11111 000 134589999999999999999999987654443 334
Q ss_pred EEecCCccceEEEEEcCCC-----cEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcE
Q 024185 130 FLVGGDTAEVCDIKFSNDG-----KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL 204 (271)
Q Consensus 130 ~~~~~~~~~v~~~~~s~~~-----~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 204 (271)
....+...+|.+++|+|.. ..+++.....++.+|.+. |+.+..-..-.- ...|+.+.|+|.+++.|+.|+.+
T Consensus 170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~F--dP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNF--DPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCC--CchhheeccCCcEEEEccCCCce
Confidence 4456678899999999953 467777778888888875 443332111111 25678999999999999999999
Q ss_pred EEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 205 HAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 205 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
++|- +.|-.+.++.....+|+.++..|++.+++.|+ |++-.|++...+
T Consensus 247 ~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 247 SLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred EEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhH
Confidence 9996 56777788877788999999999999999998 999999876544
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-19 Score=129.26 Aligned_cols=226 Identities=15% Similarity=0.143 Sum_probs=158.8
Q ss_pred ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccC---ceEEEEEecCcc---------eeEE
Q 024185 20 NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTA---LEYGIFVLMLAS---------FQGI 87 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~---------~~~~ 87 (271)
+.++.++....+. .....+.|.++.+.|..++-+|..+.+.+.+..-.+.. -.+.||.+.... ++..
T Consensus 39 dNqVhll~~d~e~-s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 39 DNQVHLLRLDSEG-SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred cceeEEEEecCcc-chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 3455554443321 11233458889999999999998887655333322222 346789885432 2333
Q ss_pred Eec---CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEE---ecCCccceEEEEEcC--CCcEEEEEecCCe
Q 024185 88 LRL---RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL---VGGDTAEVCDIKFSN--DGKSMLLTTTNNN 159 (271)
Q Consensus 88 ~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~s~--~~~~l~~~~~d~~ 159 (271)
+.. ..+.|+.|.|++..+++-. |..|.+|++...... ..... -.++....++-+|+| ||+.+++.+ |++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~-vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~t 194 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI-VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DST 194 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch-heeecccccccccceecccccCCCCccceEEEeC-CCc
Confidence 331 2468899999999988876 788999999876641 11111 112456778889999 788777655 789
Q ss_pred EEEEECCCCeEEEEee-cCCCCCceeeEEECCCCC-EEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEEEecCC-c
Q 024185 160 IYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRR-A 235 (271)
Q Consensus 160 i~~~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~-~ 235 (271)
+..||+|+.++...+. .|... +..+.|+|+.+ +|+++++||.|+|||.+. ..+++++.+|..+|+++.|+|.. .
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~--vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq 272 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQR--VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ 272 (370)
T ss_pred EEEEEccchhhhcchhhhhcce--eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce
Confidence 9999999887666554 34443 88999999965 677899999999999985 55788999999999999999964 4
Q ss_pred EEEEeC--CeEEEEcCCC
Q 024185 236 MFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 236 ~l~~~~--~~v~iw~~~~ 251 (271)
++++++ ..|.+|....
T Consensus 273 LiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 273 LILSGGSDSAVNLSCASS 290 (370)
T ss_pred EEEecCCCceeEEEeccc
Confidence 666666 6688998754
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-19 Score=141.06 Aligned_cols=202 Identities=12% Similarity=0.083 Sum_probs=156.3
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE--e
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL--R 89 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~ 89 (271)
+.+++..++|.+..++..... .+....|.+++.+-.|+|+|.. |+++++||.|++|.- +|-...++ .
T Consensus 76 d~~~i~s~DGkf~il~k~~rV-----E~sv~AH~~A~~~gRW~~dGtg-----Llt~GEDG~iKiWSr-sGMLRStl~Q~ 144 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARV-----ERSISAHAAAISSGRWSPDGAG-----LLTAGEDGVIKIWSR-SGMLRSTVVQN 144 (737)
T ss_pred ceEEEEcCCceEEEecccchh-----hhhhhhhhhhhhhcccCCCCce-----eeeecCCceEEEEec-cchHHHHHhhc
Confidence 457778888988888765442 2347889999999999999998 899999999999976 45443333 2
Q ss_pred cCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe
Q 024185 90 LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE 169 (271)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 169 (271)
...+.|++|.|+.+.++.+. .+.+.|=.+.-... ....++|.+-|.++.|++..+.+++|++|-..++||. .|+
T Consensus 145 ~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k----~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~ 218 (737)
T KOG1524|consen 145 EESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSK----IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGA 218 (737)
T ss_pred CceeEEEEECCCCCceEEec-CCeEEEeecccccc----eeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCc
Confidence 34588999999988776664 35676666665544 6667899999999999999999999999999999994 577
Q ss_pred EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEE
Q 024185 170 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLS 245 (271)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~ 245 (271)
.+.+-..|..+ |++++|+|+ +.++.++.+ +++ --....+.|..++|||||..+++|. |.+.
T Consensus 219 ~Lf~S~~~ey~--ITSva~npd-~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 219 NLFTSAAEEYA--ITSVAFNPE-KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred ccccCChhccc--eeeeeeccc-cceeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEE
Confidence 77766667766 999999999 666666643 333 1123457899999999999999887 5533
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-19 Score=135.14 Aligned_cols=191 Identities=14% Similarity=0.160 Sum_probs=148.0
Q ss_pred ccceEEeeEEecCCc-hhhhhhhhhhccCceEEEEEecCcce---------eEEEecC--CcceEEEcCCCCEEEEEecC
Q 024185 44 SKGIRRGLFLSACLQ-LMIALCLVLLTTALEYGIFVLMLASF---------QGILRLR--GRPTVAFDQQGLVFAVAMEA 111 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~--~~~~~~~~~~~~~l~~~~~d 111 (271)
...++..+.|.++.. . +++|+.|..|++|-++.+.. ...+..| .++++.|+|+|..||+|+++
T Consensus 12 ~~~pv~s~dfq~n~~~~-----laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~ 86 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNK-----LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG 86 (434)
T ss_pred CCCceEEEEeccCcccc-----eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence 345677788887766 4 88999999999998764332 2233444 47889999999999999999
Q ss_pred CeEEEEeCC--------C----CCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCC
Q 024185 112 GAIKLFDSR--------S----YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS 179 (271)
Q Consensus 112 ~~i~i~d~~--------~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 179 (271)
|.+.+|... + .+........+.+|...+..++|+|++.++++++.|..+++||+..|+....+..|.+
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence 999999866 2 0112344556778999999999999999999999999999999999999999988887
Q ss_pred CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec--------C-----------Cc----ceeEEEEEecCCcE
Q 024185 180 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--------G-----------NI----GVVACLKWAPRRAM 236 (271)
Q Consensus 180 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~-----------~~----~~v~~~~~s~~~~~ 236 (271)
. +..++|.|-++++++-+.|...+.+.+...+.++... . |. .--..++|+|||.+
T Consensus 167 y--vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 167 Y--VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL 244 (434)
T ss_pred c--cceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence 6 8889999999999999988877777665433322111 0 11 12356889999999
Q ss_pred EEEeC
Q 024185 237 FVAAS 241 (271)
Q Consensus 237 l~~~~ 241 (271)
|++.+
T Consensus 245 lvtPa 249 (434)
T KOG1009|consen 245 LVTPA 249 (434)
T ss_pred EEccc
Confidence 99875
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=139.66 Aligned_cols=207 Identities=11% Similarity=0.156 Sum_probs=160.3
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCC--EEEEEecCCe
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGL--VFAVAMEAGA 113 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~--~l~~~~~d~~ 113 (271)
..-.|.+|++.|.++...|.|.+ |++|+.||++++|.+.+|.+++++...+ +.+++|+|.++ .||++..+ .
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~w-----lasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~-~ 465 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEW-----LASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE-C 465 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcce-----eeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC-c
Confidence 34568999999999999999999 9999999999999999999999998764 78899999875 45554433 3
Q ss_pred EEEEeCCCCCC---------------------------------CcceEEEecCCccceEEEEEcCCCcEEEEEec---C
Q 024185 114 IKLFDSRSYDK---------------------------------GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---N 157 (271)
Q Consensus 114 i~i~d~~~~~~---------------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d 157 (271)
+.+.+..-+.. ........-.|...|..+.|+..|.+|++... .
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 54544322100 00001122347788999999999999998765 4
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEE
Q 024185 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMF 237 (271)
Q Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 237 (271)
..|.|+++...+...-|.... +.+.++.|+|...+|+.++.. .|+|||+..++.++.+.....+|..++.+|.|.-|
T Consensus 546 ~~VliHQLSK~~sQ~PF~ksk--G~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSK--GLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred ceEEEEecccccccCchhhcC--CceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 578999987665544443333 348999999999999988864 79999999988888887777889999999999999
Q ss_pred EEeC--CeEEEEcCCCC
Q 024185 238 VAAS--SVLSFWIPNPS 252 (271)
Q Consensus 238 ~~~~--~~v~iw~~~~~ 252 (271)
+.++ +.+..||+.-.
T Consensus 623 i~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLS 639 (733)
T ss_pred EEecCCCeeEEEEcccC
Confidence 9888 77888898664
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=141.94 Aligned_cols=225 Identities=14% Similarity=0.168 Sum_probs=170.1
Q ss_pred ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-eeE-----EEecCCc
Q 024185 20 NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-FQG-----ILRLRGR 93 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~-----~~~~~~~ 93 (271)
.|..+.+..... ..........+|.+.|..+.|+|.|.+ +++.+.|-+-|+|-.-..+ .-. +++++..
T Consensus 337 ~Gg~hlWkt~d~-~~w~~~~~iSGH~~~V~dv~W~psGef-----lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl 410 (764)
T KOG1063|consen 337 TGGFHLWKTKDK-TFWTQEPVISGHVDGVKDVDWDPSGEF-----LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDL 410 (764)
T ss_pred cCcEEEEeccCc-cceeeccccccccccceeeeecCCCCE-----EEEeccccceeeecccccccceeeecccccccccc
Confidence 455566652221 112233457899999999999999999 8999999999998654111 111 2355667
Q ss_pred ceEEEcCCCCEEEEEecCCeEEEEeCCC----------C-----C--C-------------Ccc----------------
Q 024185 94 PTVAFDQQGLVFAVAMEAGAIKLFDSRS----------Y-----D--K-------------GPF---------------- 127 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~----------~-----~--~-------------~~~---------------- 127 (271)
.|+++-+....+++|.+...+++|+... + . . ++.
T Consensus 411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 8899887666788888888888887532 0 0 0 000
Q ss_pred --------------------------eEEEecCCccceEEEEEcCCCcEEEEEecC-----CeEEEEECCCCeEEEEeec
Q 024185 128 --------------------------DTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSL 176 (271)
Q Consensus 128 --------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~ 176 (271)
....+.||...|.+++.+|+++++|+++.. ..|++|+..+....+.+..
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~ 570 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG 570 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc
Confidence 011233577889999999999999998763 4699999998888888888
Q ss_pred CCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee----EEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 177 EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE----VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 177 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
|.-. |+.++|||||++|++.+.|+++.+|....... ....+.|..-|.+..|+|++.+++++| .+|++|...
T Consensus 571 HsLT--VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 571 HSLT--VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred cceE--EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 8876 99999999999999999999999998754332 223678999999999999999999999 779999998
Q ss_pred CC
Q 024185 251 PS 252 (271)
Q Consensus 251 ~~ 252 (271)
..
T Consensus 649 ~~ 650 (764)
T KOG1063|consen 649 DL 650 (764)
T ss_pred Cc
Confidence 87
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-17 Score=118.24 Aligned_cols=222 Identities=12% Similarity=0.017 Sum_probs=155.8
Q ss_pred eeEEeeecceeeEEEEeeccc----ee--eEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce-
Q 024185 12 QALLFARQNIILILLESLCGI----YQ--CMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF- 84 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~- 84 (271)
+.++.+...|.+..+....-. .. ...+-.++.|++++..++|..+ + |+++ .||.|+=|..+....
T Consensus 23 ~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~-----Lls~-gdG~V~gw~W~E~~es 94 (325)
T KOG0649|consen 23 QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--F-----LLSG-GDGLVYGWEWNEEEES 94 (325)
T ss_pred eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--h-----eeec-cCceEEEeeehhhhhh
Confidence 344444556666665543211 11 1233446899999999999943 2 3344 459999987643211
Q ss_pred --------------eEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcE
Q 024185 85 --------------QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS 150 (271)
Q Consensus 85 --------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 150 (271)
....+.++++++.+.|..+-++.++.|+.++-||+++++. ...+.+|++.+.++.--.....
T Consensus 95 ~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i----~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 95 LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI----QREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE----EEEEcCCcceeeeeeecccCcc
Confidence 0112334678899999887777777899999999999997 7889999999999998555556
Q ss_pred EEEEecCCeEEEEECCCCeEEEEeecCCCC--------CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc
Q 024185 151 MLLTTTNNNIYVLDAYGGEKRCGFSLEPSP--------NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI 222 (271)
Q Consensus 151 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 222 (271)
+++|++||++++||+++++.+..+....++ .+| .+..-+..++++|+. ..+.+|++++.++...++ -.
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgG-p~lslwhLrsse~t~vfp-ip 246 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IP 246 (325)
T ss_pred eeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCC-CceeEEeccCCCceEEEe-cc
Confidence 999999999999999999998887655443 244 344455668887764 479999999998888775 34
Q ss_pred ceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 223 GVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
+++..+.|..| .+++++ +.+.-|.+..
T Consensus 247 a~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 247 ARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred cceeEeeeecc--eEEEeccccceeeeeecc
Confidence 56778888644 444444 5577776654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-16 Score=129.85 Aligned_cols=232 Identities=21% Similarity=0.302 Sum_probs=173.1
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEccccc-ceEEeeEE-ecCCchhhhhhhhh-hccCceEEEEEecC-cceeEE
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSK-GIRRGLFL-SACLQLMIALCLVL-LTTALEYGIFVLML-ASFQGI 87 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-s~~~~~~~~~~l~s-~~~dg~i~iwd~~~-~~~~~~ 87 (271)
..+.....++.+..++...+. .....+.... ..+..+.. ++++... ++. +..|+.+.+||... ......
T Consensus 78 ~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~ 150 (466)
T COG2319 78 ELLLSGSSDGTIKLWDLDNGE---KLIKSLEGLHDSSVSKLALSSPDGNSI----LLASSSLDGTVKLWDLSTPGKLIRT 150 (466)
T ss_pred cEEEEecCCCcEEEEEcCCCc---eeEEEEeccCCCceeeEEEECCCcceE----EeccCCCCccEEEEEecCCCeEEEE
Confidence 344444457777777766663 1223344422 35555555 6777621 334 45599999999987 677777
Q ss_pred EecCC--cceEEEcCCCCEEEEEec-CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc-EEEEEecCCeEEEE
Q 024185 88 LRLRG--RPTVAFDQQGLVFAVAME-AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVL 163 (271)
Q Consensus 88 ~~~~~--~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~ 163 (271)
+..|. +..++|+|+++.+++++. ++.+++|+...... ...+.+|...+.+++|+|++. .+++++.|+.+++|
T Consensus 151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~w 226 (466)
T COG2319 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP----LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226 (466)
T ss_pred EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce----EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEE
Confidence 77764 566999999998888875 99999999998554 556667999999999999998 44555889999999
Q ss_pred ECCCCeEEE-EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee-EEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 164 DAYGGEKRC-GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 164 d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
|...+.... .+..+.... + ..|+|++.++++++.|+.+++|+.+.... +..+.+|...+.++.|+|++..+++++
T Consensus 227 d~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 227 DLSTGKLLRSTLSGHSDSV-V--SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303 (466)
T ss_pred ECCCCcEEeeecCCCCcce-e--EeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee
Confidence 988777777 566666542 2 38999999999999999999999987665 444467888999999999888888866
Q ss_pred --CeEEEEcCCCCCCCcC
Q 024185 242 --SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 242 --~~v~iw~~~~~~~~~~ 257 (271)
+.+++|+..+......
T Consensus 304 ~d~~~~~~~~~~~~~~~~ 321 (466)
T COG2319 304 SDGTVRLWDLETGKLLSS 321 (466)
T ss_pred CCCcEEEEEcCCCceEEE
Confidence 5599998877654433
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=129.76 Aligned_cols=190 Identities=12% Similarity=0.137 Sum_probs=145.1
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCc--ceEEEcC--CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc-cce
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGR--PTVAFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT-AEV 139 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~v 139 (271)
+|++-..|.|++||..+++.+..++++.. +.+.|.. ....+.+++.||+|++||++.... ...+...++. .+.
T Consensus 43 vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e--~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE--SARISWTQQSGTPF 120 (376)
T ss_pred EEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh--hhheeccCCCCCcc
Confidence 66788899999999999999999988863 4477766 456789999999999999998775 3344455555 567
Q ss_pred EEEEEcCCCcEEEEEec----CCeEEEEECCCCeE-EEEe-ecCCCCCceeeEEECCC-CCEEEEecCCCcEEEEEcCCc
Q 024185 140 CDIKFSNDGKSMLLTTT----NNNIYVLDAYGGEK-RCGF-SLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAWNINTR 212 (271)
Q Consensus 140 ~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~~-~~~~-~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~ 212 (271)
.|++.+-.++.+++|.. +..+.+||.|..+. ++.+ ..|... |++++|+|. -+.|++|+.||.+.++|++..
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD--VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD--VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCc--ceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 88888777888888764 77899999998776 4443 345444 999999996 568999999999999999754
Q ss_pred ee---EEEecCCcceeEEEEEecCC-cEEEEeC--CeEEEEcCCCCCCCcCC
Q 024185 213 NE---VACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 213 ~~---~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~~v~iw~~~~~~~~~~~ 258 (271)
.. +...-.|...|.++.|..++ +.+.+-+ ++..+|+++.+......
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 22 22223477789999999887 2344444 99999999988754433
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=122.65 Aligned_cols=150 Identities=17% Similarity=0.432 Sum_probs=110.2
Q ss_pred EEEcCCCCEEEEEec----------CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEE--ecCCeEEEE
Q 024185 96 VAFDQQGLVFAVAME----------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT--TTNNNIYVL 163 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~d~~i~~~ 163 (271)
+.|+|+|++|+.-.. -+...+|.++.... +.....+. ..++|.+++|+|+|+.|++. ..++.+.+|
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 889999987775432 13455666644332 23344443 23579999999999987655 357799999
Q ss_pred ECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC---CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEe
Q 024185 164 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG---DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA 240 (271)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 240 (271)
|++ ++.+..+. ... ...+.|+|+|+++++++. .|.+.+||+++.+.+.... |. .++.++|+|||++++++
T Consensus 89 d~~-~~~i~~~~--~~~--~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQP--RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATA 161 (194)
T ss_pred cCc-ccEeEeec--CCC--ceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEE
Confidence 996 66666654 222 677999999999998875 4679999999999888875 33 36899999999999988
Q ss_pred C--------CeEEEEcCCCCCC
Q 024185 241 S--------SVLSFWIPNPSSN 254 (271)
Q Consensus 241 ~--------~~v~iw~~~~~~~ 254 (271)
. +.++||+.....+
T Consensus 162 ~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred EeccceeccccEEEEEecCeEe
Confidence 4 4589999975433
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-17 Score=127.63 Aligned_cols=144 Identities=8% Similarity=-0.021 Sum_probs=113.2
Q ss_pred EeeecceeeEEEEeeccc-----eeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec--------C
Q 024185 15 LFARQNIILILLESLCGI-----YQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM--------L 81 (271)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~--------~ 81 (271)
.-+..+..+..|....+. ....++..+..|..+++++.|+|+|.. ++||+.+|.+.+|-.. +
T Consensus 30 aT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gel-----LASg~D~g~v~lWk~~~~~~~~~d~ 104 (434)
T KOG1009|consen 30 ATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGEL-----LASGGDGGEVFLWKQGDVRIFDADT 104 (434)
T ss_pred ecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCe-----eeecCCCceEEEEEecCcCCccccc
Confidence 333445555555544332 234577788999999999999999999 9999999999999765 2
Q ss_pred -----c---ceeEEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEE
Q 024185 82 -----A---SFQGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM 151 (271)
Q Consensus 82 -----~---~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 151 (271)
. ...+.+.+| .+.-++|+|+++++++++.|..+++||+..++. ...+..|...+..++|.|-++++
T Consensus 105 e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l----~~~~~dh~~yvqgvawDpl~qyv 180 (434)
T KOG1009|consen 105 EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL----LAILDDHEHYVQGVAWDPLNQYV 180 (434)
T ss_pred hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee----Eeeccccccccceeecchhhhhh
Confidence 1 123344555 456699999999999999999999999999987 67788999999999999999999
Q ss_pred EEEecCCeEEEEECCC
Q 024185 152 LLTTTNNNIYVLDAYG 167 (271)
Q Consensus 152 ~~~~~d~~i~~~d~~~ 167 (271)
++-+.|...+.+++..
T Consensus 181 ~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 181 ASKSSDRHPEGFSAKL 196 (434)
T ss_pred hhhccCcccceeeeee
Confidence 9988887666666543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-17 Score=137.29 Aligned_cols=190 Identities=14% Similarity=0.101 Sum_probs=129.8
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhcc---CceEEEEEecCcceeEE--EecCCcceEEEcCCCCEEEEEe-cCCeE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTT---ALEYGIFVLMLASFQGI--LRLRGRPTVAFDQQGLVFAVAM-EAGAI 114 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~-~d~~i 114 (271)
+..+...+....|||+|+. ++..+. +..|++||+++++.... +.++ ...++|+|||+.|+.++ .+|..
T Consensus 199 lt~~~~~v~~p~wSPDG~~-----la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~-~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGSK-----LAYVSFENKKSQLVVHDLRSGARKVVASFRGH-NGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred eccCCCccccceEcCCCCE-----EEEEEecCCCcEEEEEeCCCCceEEEecCCCc-cCceeECCCCCEEEEEEecCCcE
Confidence 5566778889999999998 444333 35799999988764332 2332 33589999999888764 57765
Q ss_pred EE--EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe-cCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECC
Q 024185 115 KL--FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTP 190 (271)
Q Consensus 115 ~i--~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~ 190 (271)
.+ ||+.+++ ...+..+...+....|+|||+.|+.++ .++...+|++... .....+ .+.. ....|+|
T Consensus 273 ~Iy~~d~~~~~-----~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~----~~~~~Sp 342 (429)
T PRK01742 273 NIYVMGANGGT-----PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG----YSAQISA 342 (429)
T ss_pred EEEEEECCCCC-----eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC----CCccCCC
Confidence 54 5665554 334455667788999999999887665 4677788876432 222222 2221 3478999
Q ss_pred CCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcC
Q 024185 191 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 191 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
||++++..+.++ +.+||+.+++.......+ ....+.|+|||++|+.++ +...+|++
T Consensus 343 DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 343 DGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 999998887764 666999888765433322 235788999999999886 55666654
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.6e-18 Score=123.33 Aligned_cols=226 Identities=13% Similarity=0.137 Sum_probs=160.8
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcc-cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee-----
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFA-TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ----- 85 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----- 85 (271)
+.|+-+.+.|.+..|........ ..++ .+...+..+..-|++. +.+-+.|+.+.+|++.-+..+
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~r~~----~~~r~~g~~~it~lq~~p~d~------l~tqgRd~~L~lw~ia~s~~i~i~Si 95 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTERDL----PLIRLFGRLFITNLQSIPNDS------LDTQGRDPLLILWTIAYSAFISIHSI 95 (323)
T ss_pred hhhhcccccceEEEEEeecCccc----hhhhhhccceeeceeecCCcc------hhhcCCCceEEEEEccCcceEEEeee
Confidence 45555667788888877665222 2356 5667788888888755 668899999999988542110
Q ss_pred --------------------EEE--ec------C--------------------CcceEEEc--C-CCC--EEEEEecCC
Q 024185 86 --------------------GIL--RL------R--------------------GRPTVAFD--Q-QGL--VFAVAMEAG 112 (271)
Q Consensus 86 --------------------~~~--~~------~--------------------~~~~~~~~--~-~~~--~l~~~~~d~ 112 (271)
+.+ +. | ....+++. . +++ ++++|.++|
T Consensus 96 ~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsg 175 (323)
T KOG0322|consen 96 VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESG 175 (323)
T ss_pred eccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCC
Confidence 000 00 0 01113332 1 222 466788899
Q ss_pred eEEEEeCCCCCC------CcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC--eEEE--EeecCCCCCc
Q 024185 113 AIKLFDSRSYDK------GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC--GFSLEPSPNT 182 (271)
Q Consensus 113 ~i~i~d~~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~--~~~~~~~~~~ 182 (271)
.+.+||+.++.. ..........|..+|.++.|.+.-..=++|+.+..+..|++... .+.. ...... ..
T Consensus 176 hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn--pG 253 (323)
T KOG0322|consen 176 HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN--PG 253 (323)
T ss_pred eEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecC--CC
Confidence 999999988632 00013335568899999999986555677888888999988543 2211 122222 23
Q ss_pred eeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcC
Q 024185 183 NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 183 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
+..+.+-||++.+|+++.|+.|++|..++.+++..++-|.+.|++++|+|+..++|++| +.|.+|++
T Consensus 254 v~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 77799999999999999999999999999999999999999999999999999999999 77999986
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.1e-18 Score=121.01 Aligned_cols=200 Identities=15% Similarity=0.134 Sum_probs=147.0
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecC---------c-ceeEEEecCCcce--EEEcCCCCEEEEEecCCeEE
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLML---------A-SFQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK 115 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~-~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~~i~ 115 (271)
|-.-+++|.+++ |+.|..+|.|.+..+++ + ..+...+.|..+. ++|. ..+|++++ ||.|+
T Consensus 13 vf~qa~sp~~~~-----l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~ 84 (325)
T KOG0649|consen 13 VFAQAISPSKQY-----LFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVY 84 (325)
T ss_pred HHHHhhCCcceE-----EEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEE
Confidence 444678999998 88999999999998753 1 2333446676444 7776 45677776 69999
Q ss_pred EEeCCCCCC----CcceEEEecCC-----ccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeE
Q 024185 116 LFDSRSYDK----GPFDTFLVGGD-----TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA 186 (271)
Q Consensus 116 i~d~~~~~~----~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~ 186 (271)
-|.-+.... ++.-....+-| -..|+++-..|..+.+++++.|+.++-||+++|+..+.+++|... +.++
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY--vH~v 162 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY--VHSV 162 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce--eeee
Confidence 998654321 11111111112 246889999998888888889999999999999999999999876 8888
Q ss_pred EECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC----------cceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCC
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN----------IGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNS 255 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~ 255 (271)
.--.....+++|++||++++||.++++++..+... ..+|-+++- +..+|++|+ -.+.+|+++..+..
T Consensus 163 v~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t 240 (325)
T KOG0649|consen 163 VGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSEST 240 (325)
T ss_pred eecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCce
Confidence 77444556899999999999999999998876422 234555544 567999998 66999999998776
Q ss_pred cCCC
Q 024185 256 TDES 259 (271)
Q Consensus 256 ~~~~ 259 (271)
..+.
T Consensus 241 ~vfp 244 (325)
T KOG0649|consen 241 CVFP 244 (325)
T ss_pred EEEe
Confidence 6554
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-17 Score=123.54 Aligned_cols=206 Identities=13% Similarity=0.137 Sum_probs=147.6
Q ss_pred ccceEEeeEEecCCch-hhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCC-CEEEEEecCCeEEEEeC
Q 024185 44 SKGIRRGLFLSACLQL-MIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQG-LVFAVAMEAGAIKLFDS 119 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~-~~l~~~~~d~~i~i~d~ 119 (271)
++.....++|+-+... -.. +|.++.-|.|++.|+.+++....+.+|+ ++.+.+.|+. +++++++.|..|++|++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~--la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPF--LAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred CCcceEEEEEEecCCCCCee--EEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 4556666777654331 111 7788899999999999999999998886 5669999976 78999999999999999
Q ss_pred CCCCCCcceEE-EecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeec------CC--------------
Q 024185 120 RSYDKGPFDTF-LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL------EP-------------- 178 (271)
Q Consensus 120 ~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~------~~-------------- 178 (271)
++..+ +..+ -+.+|.+.|.++.|+++|.++++++.|-++++|++...+....++. ..
T Consensus 166 ~~~~C--v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 166 QTDVC--VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred cCCeE--EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 99886 2222 2568999999999999999999999999999999974322111110 00
Q ss_pred ------CCCceeeEEECCCCCEEEEecCCCcEEEEEc-CCcee-------------EEEecCCcceeEEEE--EecCCcE
Q 024185 179 ------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNI-NTRNE-------------VACWNGNIGVVACLK--WAPRRAM 236 (271)
Q Consensus 179 ------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~-------------~~~~~~~~~~v~~~~--~s~~~~~ 236 (271)
+...|-|+.|- |+++++-+.++.|..|.. +-.+. +.+++-....|+-+. |.|-+++
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM 321 (385)
T ss_pred ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence 00112223332 578899899999999987 21111 223333444555555 4556789
Q ss_pred EEEeC--CeEEEEcCCCCCCC
Q 024185 237 FVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 237 l~~~~--~~v~iw~~~~~~~~ 255 (271)
||.|. |++.+||++..+..
T Consensus 322 la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred HhhccCCCcEEEEECCCCCCc
Confidence 99987 99999999887664
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-18 Score=130.31 Aligned_cols=163 Identities=13% Similarity=0.170 Sum_probs=132.6
Q ss_pred EecCCcce--EEEcC-CCCEEEEEecCCeEEEEeCCCCCCCc---ceEEEecCCccceEEEEEcCC-CcEEEEEecCCeE
Q 024185 88 LRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGP---FDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNI 160 (271)
Q Consensus 88 ~~~~~~~~--~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i 160 (271)
+.+|..++ ++|+| +...||+|+.|.+|.+|++..+.+.. .....+.+|...|--++|+|. .+.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 45666555 88998 45689999999999999987654310 124567899999999999994 5678899999999
Q ss_pred EEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcc-eeEEEEEecCCcEEEE
Q 024185 161 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG-VVACLKWAPRRAMFVA 239 (271)
Q Consensus 161 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~ 239 (271)
.+||+.+++.+-++. |... |.+++|+.||.++++++.|..|+|||.++++.+..-.+|.+ .-..+-|-.+|.++.+
T Consensus 157 ~iWnv~tgeali~l~-hpd~--i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-HPDM--VYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred EEEeccCCceeeecC-CCCe--EEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 999999999888877 5554 99999999999999999999999999999999998878865 3456678889985555
Q ss_pred eC-----CeEEEEcCCCCC
Q 024185 240 AS-----SVLSFWIPNPSS 253 (271)
Q Consensus 240 ~~-----~~v~iw~~~~~~ 253 (271)
|- ..+-+||.....
T Consensus 234 Gfsr~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLE 252 (472)
T ss_pred ccccccccceeccCccccc
Confidence 52 459999987643
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-16 Score=130.62 Aligned_cols=202 Identities=17% Similarity=0.169 Sum_probs=136.1
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEE-ecCC--eEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVA-MEAG--AIKL 116 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~d~--~i~i 116 (271)
+..+...+....|||+|+.+++ ....+.+..+++||+.+++........+ ...++|+|||+.|+.. +.+| .|++
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~--~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAY--VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEE--EEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 3345567888999999998443 1112335679999998886544333222 3458999999988865 3344 5999
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC-C--eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-N--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
||+.+++. ..+..+...+....|+|||+.|+..+.+ + .|+.+|+.+++.. .+..... ......|+|||+
T Consensus 272 ~d~~tg~~-----~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~--~~~~~~~SpDG~ 343 (429)
T PRK03629 272 MDLASGQI-----RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGS--QNQDADVSSDGK 343 (429)
T ss_pred EECCCCCE-----EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCC--CccCEEECCCCC
Confidence 99987763 2333444567889999999999877754 3 4666677766543 3333322 245689999999
Q ss_pred EEEEecCC---CcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-----CeEEEEcCCCCCC
Q 024185 194 YVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSN 254 (271)
Q Consensus 194 ~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~v~iw~~~~~~~ 254 (271)
+++..+.+ ..|.+||+.+++... +... .......|+|||++|+.++ ..+.+++++.+..
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~ 410 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 410 (429)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe
Confidence 99876543 358899998876543 3322 2245788999999888876 2378888865443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-17 Score=121.29 Aligned_cols=196 Identities=12% Similarity=0.130 Sum_probs=144.3
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce-eEEEecC-------CcceEEEcC--CCCEEEEEecCC
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF-QGILRLR-------GRPTVAFDQ--QGLVFAVAMEAG 112 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~-------~~~~~~~~~--~~~~l~~~~~d~ 112 (271)
.+-+.++|+.|.|++.. +++-. |..|.+|+++.+.. ++.+... ....-+|+| +++.+++.+ |+
T Consensus 121 eavg~i~cvew~Pns~k-----lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~ 193 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDK-----LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DS 193 (370)
T ss_pred HHhCceeeEEEcCCCCe-----eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CC
Confidence 34568999999999988 33333 88999999987665 4444221 234467888 777777766 89
Q ss_pred eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc-EEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECC
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTP 190 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~ 190 (271)
++..||+++... . ...-.+|...|..+.|+|+.+ .|++++.||.|++||.|.. .++..+..|.+ ++.++.|+|
T Consensus 194 tl~~~D~RT~~~--~-~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH--WvW~VRfn~ 268 (370)
T KOG1007|consen 194 TLQFWDLRTMKK--N-NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH--WVWAVRFNP 268 (370)
T ss_pred cEEEEEccchhh--h-cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce--EEEEEEecC
Confidence 999999998764 1 112346888899999999865 4678899999999999864 45666776665 499999999
Q ss_pred C-CCEEEEecCCCcEEEEEcCCc-----------------------------eeEEEecCCcceeEEEEEecCCcEE-EE
Q 024185 191 D-GQYVVSGSGDGTLHAWNINTR-----------------------------NEVACWNGNIGVVACLKWAPRRAMF-VA 239 (271)
Q Consensus 191 ~-~~~l~~~~~dg~i~iwd~~~~-----------------------------~~~~~~~~~~~~v~~~~~s~~~~~l-~~ 239 (271)
. .+++++|+.|..|.+|...+- ..+.++..|...|.+++||.-..++ |+
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 6 567789999999999965321 1133567789999999999866654 45
Q ss_pred eC--CeEEEEcCC
Q 024185 240 AS--SVLSFWIPN 250 (271)
Q Consensus 240 ~~--~~v~iw~~~ 250 (271)
-| |.+.|=.+.
T Consensus 349 LSYDGRviIs~V~ 361 (370)
T KOG1007|consen 349 LSYDGRVIISSVP 361 (370)
T ss_pred eccCceEEeecCC
Confidence 56 777765543
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-18 Score=135.22 Aligned_cols=198 Identities=16% Similarity=0.191 Sum_probs=140.1
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG 92 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 92 (271)
.++++...|.+..++..........-+.-...+..+.++.|-|.++.+ |+.+-.+|.++++|.+- ..+..
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~----Fl~a~~sGnlyly~~~~------~~~~t 256 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSL----FLVAHASGNLYLYDKEI------VCGAT 256 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCce----EEEEEecCceEEeeccc------cccCC
Confidence 467777777777777655311111111112234678899998887764 55778889999988721 11112
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 172 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~ 172 (271)
.++....+++..++.....+. ... .|+..+.+ ..+.|..++|+|||++||+.+.||.++|||..+.+.+.
T Consensus 257 ~p~~~~~k~~~~f~i~t~ksk-------~~r-NPv~~w~~--~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg 326 (636)
T KOG2394|consen 257 APSYQALKDGDQFAILTSKSK-------KTR-NPVARWHI--GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG 326 (636)
T ss_pred CCcccccCCCCeeEEeeeecc-------ccC-CccceeEe--ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH
Confidence 333444456665655432211 110 22333333 24689999999999999999999999999998887776
Q ss_pred EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEec
Q 024185 173 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 232 (271)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 232 (271)
.++..-.. ..|++|||||+|+++|++|.-|.||.+..++.+..-++|+++|+.++|.|
T Consensus 327 ~mkSYFGG--LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 327 VMKSYFGG--LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHhhccc--eEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 66554444 99999999999999999999999999999999999999999999999984
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-16 Score=128.64 Aligned_cols=202 Identities=14% Similarity=0.143 Sum_probs=137.2
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEE-ecCC--eEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVA-MEAG--AIKL 116 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~d~--~i~i 116 (271)
+..+...+....|+|+|+.+++ .-....+..|++||+.+++........+ ....+|+|||+.|+.. +.++ .|++
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay--~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 274 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITY--MSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYT 274 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEE--EEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEE
Confidence 5566778889999999998433 1111235789999998887644332222 3458999999987644 4454 4788
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-C--CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N--NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
||+.+++. ..+..+........|+|||+.++..+. + ..|+++|+.+++..+ +..... .+....|+|||+
T Consensus 275 ~d~~~~~~-----~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~--~~~~~~~SpdG~ 346 (435)
T PRK05137 275 MDLRSGTT-----TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGG--RYSTPVWSPRGD 346 (435)
T ss_pred EECCCCce-----EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCC--cccCeEECCCCC
Confidence 89887663 334455566778999999999988764 3 368888987665433 332222 255689999999
Q ss_pred EEEEecCC---CcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC---C-----eEEEEcCCCCCC
Q 024185 194 YVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---S-----VLSFWIPNPSSN 254 (271)
Q Consensus 194 ~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~-----~v~iw~~~~~~~ 254 (271)
+++..+.+ ..|.+||+..+.. ..+. ....+..+.|+|||+.|+..+ + .+.++|+.++..
T Consensus 347 ~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 347 LIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 99876543 3688889765543 3332 223467899999999877653 1 477778876544
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-15 Score=121.65 Aligned_cols=227 Identities=10% Similarity=0.107 Sum_probs=145.9
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec-Ccce--eEEEecC-Cc
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM-LASF--QGILRLR-GR 93 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~--~~~~~~~-~~ 93 (271)
..++.+..++.... .....++.+.. .+....+.++|++++++ +++..++.|.+|+++ +++. ....... ..
T Consensus 9 ~~~~~I~~~~~~~~-g~l~~~~~~~~-~~~~~~l~~spd~~~ly----v~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p 82 (330)
T PRK11028 9 PESQQIHVWNLNHE-GALTLLQVVDV-PGQVQPMVISPDKRHLY----VGVRPEFRVLSYRIADDGALTFAAESPLPGSP 82 (330)
T ss_pred CCCCCEEEEEECCC-CceeeeeEEec-CCCCccEEECCCCCEEE----EEECCCCcEEEEEECCCCceEEeeeecCCCCc
Confidence 44677777777422 12223343433 34566789999999842 244568999999996 3332 2222222 23
Q ss_pred ceEEEcCCCCEEEEEec-CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe-cCCeEEEEECCCCeEE
Q 024185 94 PTVAFDQQGLVFAVAME-AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKR 171 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~ 171 (271)
..++++|+++++++++. ++.|.+|++++..........+. +.....+++++|+++++++++ .++.|.+||+.+...+
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 34999999998888764 78999999974321000111122 224567789999999887665 4699999999763322
Q ss_pred E-----EeecCCCCCceeeEEECCCCCEEEEecC-CCcEEEEEcCC--c--eeEEEecCC------cceeEEEEEecCCc
Q 024185 172 C-----GFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINT--R--NEVACWNGN------IGVVACLKWAPRRA 235 (271)
Q Consensus 172 ~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~--~~~~~~~~~------~~~v~~~~~s~~~~ 235 (271)
. ....... .....+.|+|+|++++++.. ++.|.+||+.. + +.++.+... ......+.++|+++
T Consensus 162 ~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 162 VAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred cccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 1 1111111 23567999999999988877 89999999973 2 334443221 11234688999999
Q ss_pred EEEEeC---CeEEEEcCCCC
Q 024185 236 MFVAAS---SVLSFWIPNPS 252 (271)
Q Consensus 236 ~l~~~~---~~v~iw~~~~~ 252 (271)
+++++. +.|.+|+++..
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 241 HLYACDRTASLISVFSVSED 260 (330)
T ss_pred EEEEecCCCCeEEEEEEeCC
Confidence 998885 67999998543
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.9e-17 Score=119.30 Aligned_cols=208 Identities=13% Similarity=0.113 Sum_probs=148.7
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc----eeEEEecC-------CcceEEEcC-CCCEEEEEec
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS----FQGILRLR-------GRPTVAFDQ-QGLVFAVAME 110 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~-------~~~~~~~~~-~~~~l~~~~~ 110 (271)
.|.-+++.+.|.|+......- + .++.+..+|+|.+...+ +...+..+ ..+++.|+. +-+++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pd-l-LATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPD-L-LATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcc-h-hhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 566778889999987532221 2 23344579999886422 11112111 234466765 5689999999
Q ss_pred CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC-cEEEEEecCCeEEEEECCCCeEEEEeecCCC-CCceeeEEE
Q 024185 111 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS-PNTNTEATF 188 (271)
Q Consensus 111 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~v~~~~~ 188 (271)
|.+..|||++++.. ......+-+|..+|..++|..++ +.+++.+.||.+++||+|..+--..+..... ......++|
T Consensus 172 DTTCTiWdie~~~~-~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 172 DTTCTIWDIETGVS-GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred cCeEEEEEEeeccc-cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999998732 12245577899999999999965 4678899999999999997654333322222 345778888
Q ss_pred CCC-CCEEEEecCC-CcEEEEEcCC-ceeEEEecCCcceeEEEEEecCC-cEEEEeC--CeEEEEcCCCCC
Q 024185 189 TPD-GQYVVSGSGD-GTLHAWNINT-RNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 189 ~~~-~~~l~~~~~d-g~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~~v~iw~~~~~~ 253 (271)
++. -+++|+-..| ..|.|.|++. ..++.++++|.+.|++++|.|.. ..|++++ ..+.+||+..-.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 875 4577766554 5799999986 55688899999999999999965 5788887 669999997643
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-16 Score=119.29 Aligned_cols=137 Identities=18% Similarity=0.291 Sum_probs=115.2
Q ss_pred CceEEEEEecCcceeEEEecC---CcceEEEcC--CCCEEEEE--ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEE
Q 024185 71 ALEYGIFVLMLASFQGILRLR---GRPTVAFDQ--QGLVFAVA--MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK 143 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~--~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 143 (271)
.+.|+|||+++.+.+.++..- ....+++++ .+.+++.- ...|.|.+||..+-+. ...+.+|.+.+.+++
T Consensus 105 ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~----v~~I~aH~~~lAala 180 (391)
T KOG2110|consen 105 EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP----VNTINAHKGPLAALA 180 (391)
T ss_pred cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee----eeEEEecCCceeEEE
Confidence 344999999999998888543 222355555 45588865 3468999999988765 666779999999999
Q ss_pred EcCCCcEEEEEecCCe-EEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC
Q 024185 144 FSNDGKSMLLTTTNNN-IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 144 ~s~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
|+++|.+||+++..|+ ||++.+.+|+.+..|........|.+++|+|++++|++.+..++|+++.+..
T Consensus 181 fs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 181 FSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 9999999999999887 7999999999999998777677899999999999999999999999998754
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-15 Score=123.33 Aligned_cols=218 Identities=21% Similarity=0.309 Sum_probs=169.0
Q ss_pred ceeeEEEEeec-cceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhcc-CceEEEEEecCcceeEEEecCC--cce
Q 024185 20 NIILILLESLC-GIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTT-ALEYGIFVLMLASFQGILRLRG--RPT 95 (271)
Q Consensus 20 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~--~~~ 95 (271)
++.+..++... . .....+..|...+..+.++|++.. +++++. |+.+++|+..++..+..+..|. +.+
T Consensus 133 d~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 133 DGTVKLWDLSTPG----KLIRTLEGHSESVTSLAFSPDGKL-----LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203 (466)
T ss_pred CccEEEEEecCCC----eEEEEEecCcccEEEEEECCCCCE-----EEecCCCCCceEEEEcCCCceEEeeccCCCceEE
Confidence 55666666654 2 445568889999999999999986 566665 9999999999888888888764 566
Q ss_pred EEEcCCCC-EEEEEecCCeEEEEeCCCCCCCcceEE-EecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE-EE
Q 024185 96 VAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTF-LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-RC 172 (271)
Q Consensus 96 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~ 172 (271)
++|+|++. .+++++.|+.+++||...+.. .. .+.+|.... ...|+|++..+++++.|+.+++|+.+.... ..
T Consensus 204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 278 (466)
T COG2319 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKL----LRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR 278 (466)
T ss_pred EEEcCCcceEEEEecCCCcEEEEECCCCcE----EeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEE
Confidence 99999998 555558999999998885543 33 467777775 448999998889999999999999987665 44
Q ss_pred EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec--CCcceeEEEEEecCCcEEEEe-C--CeEEEE
Q 024185 173 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAPRRAMFVAA-S--SVLSFW 247 (271)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~-~--~~v~iw 247 (271)
.+..|. ..+.++.|+|++..+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ . +.+.+|
T Consensus 279 ~~~~~~--~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 356 (466)
T COG2319 279 TLSGHS--SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356 (466)
T ss_pred EEecCC--ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEee
Confidence 443443 348899999998888888889889999998888777665 787789999994332455555 3 678889
Q ss_pred cCCCCC
Q 024185 248 IPNPSS 253 (271)
Q Consensus 248 ~~~~~~ 253 (271)
+.....
T Consensus 357 ~~~~~~ 362 (466)
T COG2319 357 DLRTGK 362 (466)
T ss_pred ecCCCc
Confidence 998876
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-15 Score=120.47 Aligned_cols=198 Identities=12% Similarity=0.064 Sum_probs=132.9
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc-c---eeEEEecC-CcceEEEcCCCCEEEEEe-cCCeEEEEeCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA-S---FQGILRLR-GRPTVAFDQQGLVFAVAM-EAGAIKLFDSR 120 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~---~~~~~~~~-~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~ 120 (271)
....+.++|+++.+++ +...++.+.+|++++. . .+..+.+. ....++++|+++++++++ .++.|.+||+.
T Consensus 81 ~p~~i~~~~~g~~l~v----~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 81 SPTHISTDHQGRFLFS----ASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred CceEEEECCCCCEEEE----EEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 4567999999998432 4445899999999743 2 23333332 244588999999887654 56899999997
Q ss_pred CCCC-Ccc--eEEEecCCccceEEEEEcCCCcEEEEEec-CCeEEEEECCC--Ce--EEEEeecCC----CCCceeeEEE
Q 024185 121 SYDK-GPF--DTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYG--GE--KRCGFSLEP----SPNTNTEATF 188 (271)
Q Consensus 121 ~~~~-~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~--~~--~~~~~~~~~----~~~~v~~~~~ 188 (271)
+... .+. ....... ......++|+|+|+++++++. +++|.+||+.. ++ .+..+.... .+.....+.+
T Consensus 157 ~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~ 235 (330)
T PRK11028 157 DDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI 235 (330)
T ss_pred CCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence 6332 100 0111111 244678999999999988876 89999999973 32 333332211 1122345889
Q ss_pred CCCCCEEEEecC-CCcEEEEEcCCcee----EEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCC
Q 024185 189 TPDGQYVVSGSG-DGTLHAWNINTRNE----VACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPN 250 (271)
Q Consensus 189 ~~~~~~l~~~~~-dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~ 250 (271)
+|++++++++.. ++.|.+|++.+... +..... ......+.++|||++|++++ ++|.+|+++
T Consensus 236 ~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 236 TPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999999998865 68999999865332 222222 12456889999999998876 779999874
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-16 Score=129.32 Aligned_cols=201 Identities=18% Similarity=0.199 Sum_probs=135.8
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEE-ecCC--eEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVA-MEAG--AIKL 116 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~d~--~i~i 116 (271)
+..+...+....|+|+|+.+++ ......+..|++||+.+++........+ ....+|+|||+.++.. +.+| .|++
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~--~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~ 276 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAY--VSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYV 276 (433)
T ss_pred eecCCCccccccCCCCCCEEEE--EecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEE
Confidence 4445667888999999998433 1111234579999998887544332232 2358999999987644 4454 6999
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CC--eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
||+.+++. ..+..+......++|+|||++|+..+. +| .|+++|+.+++..+ +..... ....++|+|||+
T Consensus 277 ~d~~~g~~-----~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~--~~~~~~~SpDG~ 348 (433)
T PRK04922 277 MDLGSRQL-----TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGN--YNARASVSPDGK 348 (433)
T ss_pred EECCCCCe-----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCC--CccCEEECCCCC
Confidence 99988763 334445555677899999999887764 44 47777877766433 322222 244689999999
Q ss_pred EEEEecCCC---cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-----CeEEEEcCCCCC
Q 024185 194 YVVSGSGDG---TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSS 253 (271)
Q Consensus 194 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~v~iw~~~~~~ 253 (271)
+++..+.++ .|.+||+.+++.. .+. +........|+|||++++..+ +.+.+++++.+.
T Consensus 349 ~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 349 KIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred EEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 998765432 6999999887765 333 222456789999999877664 358888886543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-16 Score=129.61 Aligned_cols=238 Identities=12% Similarity=0.102 Sum_probs=166.7
Q ss_pred eccee-EEeeecceeeEEEEeeccceee--EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce-
Q 024185 9 PITQA-LLFARQNIILILLESLCGIYQC--MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF- 84 (271)
Q Consensus 9 ~~~~~-l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~- 84 (271)
|.... ++.|+.+|++..|+...+...+ .....-..|...+..+.|-.+... .- |++++.||.|..|+++.-..
T Consensus 252 p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~-~~--f~s~ssDG~i~~W~~~~l~~P 328 (555)
T KOG1587|consen 252 PFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHN-TE--FFSLSSDGSICSWDTDMLSLP 328 (555)
T ss_pred cCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCC-Cc--eEEEecCCcEeeeeccccccc
Confidence 44444 4455789999999998876532 222334567778888888654332 11 77899999999998864321
Q ss_pred eEE-----E--------ecCCcceEEEcCC-CCEEEEEecCCeEEEEeCCCCCCCc----ceEEEecCCccceEEEEEcC
Q 024185 85 QGI-----L--------RLRGRPTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYDKGP----FDTFLVGGDTAEVCDIKFSN 146 (271)
Q Consensus 85 ~~~-----~--------~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~~~~v~~~~~s~ 146 (271)
... . ....+++++|.+. -..+++|+..|.|+--.....+..+ .....+..|.++|+++.++|
T Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nP 408 (555)
T KOG1587|consen 329 VEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNP 408 (555)
T ss_pred hhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCC
Confidence 110 0 1224566899874 4689999999999875544433322 11224556889999999999
Q ss_pred CCcEEEEEecCCeEEEEECC-CCeEEEEeecCCCCCceeeEEECCCCC-EEEEecCCCcEEEEEcCC--ceeEEEecCCc
Q 024185 147 DGKSMLLTTTNNNIYVLDAY-GGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINT--RNEVACWNGNI 222 (271)
Q Consensus 147 ~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~ 222 (271)
=+..++..+.|.++++|... ...++..+..+... +++++|||... .++++..||.+.+||+.. ..++.+...+.
T Consensus 409 F~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~--v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~ 486 (555)
T KOG1587|consen 409 FYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY--VTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCS 486 (555)
T ss_pred CccceeeeeccceeEeccccCCCCcchhhhhccce--eeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccc
Confidence 76666555559999999977 55555555555544 99999999865 566777799999999974 34455554456
Q ss_pred ceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 223 GVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
...+.+.|+++|+.|++|+ |++++|++..
T Consensus 487 ~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 487 PALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 6678889999999999998 9999999964
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-16 Score=134.40 Aligned_cols=232 Identities=14% Similarity=0.190 Sum_probs=165.1
Q ss_pred EEeeecceeeEEEEeeccc-eeeEEEEEcccccc-------eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee
Q 024185 14 LLFARQNIILILLESLCGI-YQCMIIEFFATSKG-------IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ 85 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 85 (271)
++.+.+||.+.+|+.+... .++..+.-+.+-.+ .-..+.|.....+ |+++|.-..|+|||.+.....
T Consensus 1126 lLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~-----Ll~tGd~r~IRIWDa~~E~~~ 1200 (1387)
T KOG1517|consen 1126 LLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH-----LLVTGDVRSIRIWDAHKEQVV 1200 (1387)
T ss_pred eeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCe-----EEecCCeeEEEEEecccceeE
Confidence 4555679999999888765 34454554443222 1123556555555 556666899999999998888
Q ss_pred EEEecCCcce-EEEcC---CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccc--eEEEEEcCCCcE-EEEEecCC
Q 024185 86 GILRLRGRPT-VAFDQ---QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE--VCDIKFSNDGKS-MLLTTTNN 158 (271)
Q Consensus 86 ~~~~~~~~~~-~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~-l~~~~~d~ 158 (271)
+.+......+ -++++ .|+.+++|..||.|++||.+..... -.......|... |..+.+.+.|-- |++|+.||
T Consensus 1201 ~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1201 ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred eecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCCCcceeeeccCC
Confidence 8887665433 34443 4689999999999999999865431 123345567766 999999996654 99999999
Q ss_pred eEEEEECCCCeEEE--EeecCCCCC-ceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecC-------CcceeEEE
Q 024185 159 NIYVLDAYGGEKRC--GFSLEPSPN-TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG-------NIGVVACL 228 (271)
Q Consensus 159 ~i~~~d~~~~~~~~--~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~ 228 (271)
.|++||++...... .+..+...+ ..+++..+++...+|+|+. +.|+||++. |+.+..++. ..+.+.|+
T Consensus 1280 ~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL 1357 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCL 1357 (1387)
T ss_pred eEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCccee
Confidence 99999999742222 223333222 4888999999999999998 899999985 444443322 23567999
Q ss_pred EEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 229 KWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 229 ~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
+|+|..-++|+|+ ..|.||..+...
T Consensus 1358 ~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1358 AFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eecchhHhhhhccCCceEEEeecCCcC
Confidence 9999998999887 779999877654
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-18 Score=134.39 Aligned_cols=198 Identities=13% Similarity=0.109 Sum_probs=170.2
Q ss_pred EeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcc
Q 024185 49 RGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF 127 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 127 (271)
..+.++.+|+. ++.|+..|.+-.+|+.+++....+... .+..+.|-.+.+++|++- ...+++||-..-+
T Consensus 133 Y~~~ytrnGrh-----lllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtE---- 202 (545)
T KOG1272|consen 133 YHLDYTRNGRH-----LLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTE---- 202 (545)
T ss_pred eeeeecCCccE-----EEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcE----
Confidence 34788999998 889999999999999999988888765 466799988888888775 6789999987655
Q ss_pred eEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEE
Q 024185 128 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW 207 (271)
Q Consensus 128 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 207 (271)
...++.| ..|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+. +..++-+|-...+-.|..+|+|.+|
T Consensus 203 -lHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~--~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 203 -LHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGR--TDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred -Eeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCc--cchhhcCCccceEEEcCCCceEEec
Confidence 4445444 67999999999999999999999999999999999888766655 6668889988889999999999999
Q ss_pred EcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCCC
Q 024185 208 NINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDEST 260 (271)
Q Consensus 208 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~~ 260 (271)
...+.+++..+..|.++|.++++.++|+|+++++ ..++|||++.........+
T Consensus 279 SP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 279 SPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred CCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 9999999999999999999999999999999998 7799999998776555443
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-16 Score=118.63 Aligned_cols=195 Identities=16% Similarity=0.201 Sum_probs=141.5
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe---cCCcceEEEcCCC-CEEEEEecCCeEEEEeCCC
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR---LRGRPTVAFDQQG-LVFAVAMEAGAIKLFDSRS 121 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~ 121 (271)
-.+..++|++. +.. ++++..|-.|++||-.. .....++ ...+.+++|-|.+ +.|++|.. +-|.+|....
T Consensus 99 ~dlr~~aWhqH---~~~--fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~ 171 (445)
T KOG2139|consen 99 IDLRGVAWHQH---IIA--FAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSR 171 (445)
T ss_pred cceeeEeechh---hhh--hhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCc
Confidence 35666888883 333 89999999999999876 3333333 3468899999976 56777765 4588997642
Q ss_pred CC----------CCcceEEEecCCccceEEEEEcCCCcEEEEEec-CCeEEEEECCCCeEEEEeecCCCCCceeeEEECC
Q 024185 122 YD----------KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 190 (271)
Q Consensus 122 ~~----------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 190 (271)
.. ..+.+.....+| .+|++++|++||..+++++. |..|.+||..++..+....... +.+.-+.|||
T Consensus 172 tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl--gg~slLkwSP 248 (445)
T KOG2139|consen 172 TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL--GGFSLLKWSP 248 (445)
T ss_pred ccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCC--CceeeEEEcC
Confidence 11 112334555666 78999999999999998876 7789999999987765442222 3477899999
Q ss_pred CCCEEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCC
Q 024185 191 DGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP 251 (271)
Q Consensus 191 ~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~ 251 (271)
|+.+++++.-|+..++|.... .....-. -..+.|....|+|+|++|+.+. +.-++|.+..
T Consensus 249 dgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f 310 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACSGSPRLYSLTF 310 (445)
T ss_pred CCCEEEEecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEcCCceEEEEee
Confidence 999999999999999996543 3333322 2345899999999999766554 8877887654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-16 Score=117.50 Aligned_cols=206 Identities=13% Similarity=0.064 Sum_probs=159.6
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc---eeEEEecCC--cceEEEcCCCCEEEEEecCCeEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS---FQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIK 115 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~ 115 (271)
|......++|.+|++++.. +|.+.....+.||.....+ ...++..|. ++.++|+|..+.|++++.|..-+
T Consensus 6 ~~~~~~pitchAwn~drt~-----iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQ-----IAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY 80 (361)
T ss_pred eeeccCceeeeeecCCCce-----EEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence 4445678999999999998 7788888899999887654 556676664 56799999999999999999999
Q ss_pred EEeC-CCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEE--EEeecCCCCCceeeEEECCCC
Q 024185 116 LFDS-RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR--CGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 116 i~d~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~ 192 (271)
+|.. ..++. .....+..+....+++.|+|.++.|++|+.-..|.+|-++....= .+.........|.+++|+|++
T Consensus 81 Vw~~~~~~~W--kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 81 VWTQPSGGTW--KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred ccccCCCCee--ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence 9998 55554 335556678899999999999999999999999999877543321 111111222459999999999
Q ss_pred CEEEEecCCCcEEEEEc-----CC-------------ceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 193 QYVVSGSGDGTLHAWNI-----NT-------------RNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~-----~~-------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
-++++|+.|+..+++.. ++ |+.+.++....+.+..+.|+|+|..|+-.+ +.+.+=|....
T Consensus 159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 99999999999998863 11 233344445568899999999999999887 77888887665
Q ss_pred C
Q 024185 253 S 253 (271)
Q Consensus 253 ~ 253 (271)
.
T Consensus 239 ~ 239 (361)
T KOG1523|consen 239 S 239 (361)
T ss_pred c
Confidence 4
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-16 Score=127.76 Aligned_cols=225 Identities=13% Similarity=0.068 Sum_probs=166.4
Q ss_pred ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE------EecCC-
Q 024185 20 NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI------LRLRG- 92 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~~~~~- 92 (271)
++.+-.+.....-.+...+..+..|...|..+.|+|-.+.+ |++++.|..|+||.+..+..... +.+..
T Consensus 54 G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~L----LAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~ 129 (1012)
T KOG1445|consen 54 GGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADEL----LATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNV 129 (1012)
T ss_pred CceEEEEeccccCccccccceeecccceeeccCccccchhh----hhcccCCCeeEEEecCCCcccccCCcceeecCCce
Confidence 34555555544444455677789999999999999988775 77999999999999975532221 12222
Q ss_pred -cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC-CeE
Q 024185 93 -RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-GEK 170 (271)
Q Consensus 93 -~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-~~~ 170 (271)
+.++.|+|...-|++.+..|++++||+.+.+. ...+.+|...|.+..|+.||+++++++.|..|+|||-+. ++.
T Consensus 130 ~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~----~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~p 205 (1012)
T KOG1445|consen 130 IVECLRFHPTADGILASGAHGSVYITDISTQKT----AVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEP 205 (1012)
T ss_pred EEEEeecccCcCceEEeccCceEEEEEcccCce----eecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCc
Confidence 45699999777677777789999999999887 788899999999999999999999999999999999875 567
Q ss_pred EEEeecCCCCCceeeEEECCCCCEEEEecCC----CcEEEEEcCC-ceeEEEecC-CcceeEEEEEecCCcEEEEeC-Ce
Q 024185 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGD----GTLHAWNINT-RNEVACWNG-NIGVVACLKWAPRRAMFVAAS-SV 243 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~ 243 (271)
++...+|.+. .-..+.|.-+-..|++.+.+ ..+++||.+. +..++++.- ....|.-.-|.||.++|+-++ |+
T Consensus 206 iQ~te~H~~~-rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~ 284 (1012)
T KOG1445|consen 206 IQTTEGHGGM-RDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGT 284 (1012)
T ss_pred cccccccccc-hhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCc
Confidence 7777777663 33457787665567766554 5799999886 334444421 223455667899999888777 44
Q ss_pred --EEEEcCCCCC
Q 024185 244 --LSFWIPNPSS 253 (271)
Q Consensus 244 --v~iw~~~~~~ 253 (271)
+..+.+....
T Consensus 285 ~~l~~lE~~d~q 296 (1012)
T KOG1445|consen 285 NKLFMLEMQDRQ 296 (1012)
T ss_pred ceEEEEEecCCC
Confidence 6666665443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-15 Score=123.84 Aligned_cols=199 Identities=17% Similarity=0.157 Sum_probs=128.7
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEE-EecCCeEEEE-
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAV-AMEAGAIKLF- 117 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~-~~~d~~i~i~- 117 (271)
+..+...+....|+|+|+.+++. ........|.+||+.+++........+ ....+|+|||+.|+. .+.+|...+|
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~--s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYV--SFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEE--EccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 33456678889999999984331 111223569999999887654432332 345899999998875 5667765555
Q ss_pred -eCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CCeEEEE--ECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 118 -DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVL--DAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 118 -d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
|...+. ...+..+........|+|||+.++..+. ++...+| ++.+++... +..... ......|+|||+
T Consensus 269 ~d~~~~~-----~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~--~~~~~~~SpDG~ 340 (427)
T PRK02889 269 VNADGSG-----LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGS--YNTSPRISPDGK 340 (427)
T ss_pred EECCCCC-----cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCC--CcCceEECCCCC
Confidence 454443 2334445555677899999999887664 4555555 445554322 222222 244588999999
Q ss_pred EEEEecCCC---cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC---C--eEEEEcCCC
Q 024185 194 YVVSGSGDG---TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---S--VLSFWIPNP 251 (271)
Q Consensus 194 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~--~v~iw~~~~ 251 (271)
+++..+.++ .|.+||+.+++...... . .....+.|+|||+.|+.++ | .+.+.+...
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG 404 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence 998776554 69999998877544332 2 2346789999999888775 2 366666643
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-16 Score=129.05 Aligned_cols=193 Identities=15% Similarity=0.112 Sum_probs=153.4
Q ss_pred eeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-ee
Q 024185 7 ALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-FQ 85 (271)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~ 85 (271)
--|..++|.-+-..|.+..++...- .+..+.+.|+..|.|+.+|.--...-. |++++.|+.|+++|....- ++
T Consensus 467 vSp~gqhLAsGDr~GnlrVy~Lq~l----~~~~~~eAHesEilcLeyS~p~~~~kL--LASasrdRlIHV~Dv~rny~l~ 540 (1080)
T KOG1408|consen 467 VSPDGQHLASGDRGGNLRVYDLQEL----EYTCFMEAHESEILCLEYSFPVLTNKL--LASASRDRLIHVYDVKRNYDLV 540 (1080)
T ss_pred ECCCcceecccCccCceEEEEehhh----hhhhheecccceeEEEeecCchhhhHh--hhhccCCceEEEEecccccchh
Confidence 3466677877777788888876655 445558899999999999854322112 8899999999999985321 11
Q ss_pred EEEecC---------------------------------------------------CcceEEEcCCCCEEEEEecCCeE
Q 024185 86 GILRLR---------------------------------------------------GRPTVAFDQQGLVFAVAMEAGAI 114 (271)
Q Consensus 86 ~~~~~~---------------------------------------------------~~~~~~~~~~~~~l~~~~~d~~i 114 (271)
+++.+| ..+.++..|..+++++++.|..|
T Consensus 541 qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrni 620 (1080)
T KOG1408|consen 541 QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNI 620 (1080)
T ss_pred hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccce
Confidence 111111 12337888889999999999999
Q ss_pred EEEeCCCCCCCcceEEEec---CCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCC
Q 024185 115 KLFDSRSYDKGPFDTFLVG---GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 191 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 191 (271)
+|||+++++. ...++ +|.+..-.+...|.|.|+++...|.++.++|..+++++.+..+|... |+.+.|.+|
T Consensus 621 rif~i~sgKq----~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~--VTG~kF~nD 694 (1080)
T KOG1408|consen 621 RIFDIESGKQ----VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA--VTGVKFLND 694 (1080)
T ss_pred EEEeccccce----eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh--eeeeeeccc
Confidence 9999999986 44444 45677888899999999999999999999999999999999999887 999999999
Q ss_pred CCEEEEecCCCcEEEEEcCC
Q 024185 192 GQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 192 ~~~l~~~~~dg~i~iwd~~~ 211 (271)
.+.|++.+.||.|.||.+..
T Consensus 695 CkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 695 CKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chhheeecCCceEEEEECch
Confidence 99999999999999999853
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=127.26 Aligned_cols=227 Identities=11% Similarity=0.129 Sum_probs=161.3
Q ss_pred cceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEe-eEE----ecCCchhhhhhhhhhccCceEEEEEecCcce
Q 024185 10 ITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRG-LFL----SACLQLMIALCLVLLTTALEYGIFVLMLASF 84 (271)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~----s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 84 (271)
.++.+++.+++..+.++.......... ......-+.. +.. +..|..--. |+.++.||.+.+.+- .++.
T Consensus 24 ~~eei~~~~dDh~~~~~~~~~~~s~~~----~~~p~df~pt~~h~~~rs~~~g~~~d~--~~i~s~DGkf~il~k-~~rV 96 (737)
T KOG1524|consen 24 SNEEIYFVSDDHQIFKWSDVSRDSVEV----AKLPDDFVPTDMHLGGRSSGGGKGSDT--LLICSNDGRFVILNK-SARV 96 (737)
T ss_pred ccceEEEeccCceEEEeecccchhhhh----hhCCcccCCccccccccccCCCCCcce--EEEEcCCceEEEecc-cchh
Confidence 356778888887777776655422111 1111111110 111 111111112 677888999888765 5666
Q ss_pred eEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEE
Q 024185 85 QGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 162 (271)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 162 (271)
.+.+..|. +.+-.|+|||.-|+++++||.|++|.....- ...+.....+|.|++|.|+.+.++.+. .+.+.+
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML-----RStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~I 170 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML-----RSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISI 170 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH-----HHHHhhcCceeEEEEECCCCCceEEec-CCeEEE
Confidence 66677774 4558899999999999999999999965432 233444567899999999988777655 346777
Q ss_pred EECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 163 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
=-+.....+-..+.|.+- |.++.|+|.++.+++|++|-..++||- .|..+..-..|..+|++++|.|+ +.++.+|
T Consensus 171 KpL~~n~k~i~WkAHDGi--iL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 171 KPLAANSKIIRWRAHDGL--VLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred eecccccceeEEeccCcE--EEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeeee
Confidence 777666666677788865 999999999999999999999999996 57888888889999999999999 7777777
Q ss_pred CeEEEEcCCCCC
Q 024185 242 SVLSFWIPNPSS 253 (271)
Q Consensus 242 ~~v~iw~~~~~~ 253 (271)
+++++=.++.|.
T Consensus 247 nt~R~~~p~~GS 258 (737)
T KOG1524|consen 247 NTARFSSPRVGS 258 (737)
T ss_pred eeeeecCCCccc
Confidence 777755544443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-16 Score=116.03 Aligned_cols=221 Identities=13% Similarity=0.104 Sum_probs=161.9
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEe-cCcceeEEE--
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVL-MLASFQGIL-- 88 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~-- 88 (271)
+.+.++..+.++.++...... .......+..|...++++.|+|..+. +++++.|..-++|.. +.++-..++
T Consensus 23 t~iAv~~~~~evhiy~~~~~~-~w~~~htls~Hd~~vtgvdWap~snr-----Ivtcs~drnayVw~~~~~~~WkptlvL 96 (361)
T KOG1523|consen 23 TQIAVSPNNHEVHIYSMLGAD-LWEPAHTLSEHDKIVTGVDWAPKSNR-----IVTCSHDRNAYVWTQPSGGTWKPTLVL 96 (361)
T ss_pred ceEEeccCCceEEEEEecCCC-CceeceehhhhCcceeEEeecCCCCc-----eeEccCCCCccccccCCCCeeccceeE
Confidence 456777778888888876653 13455778999999999999999988 899999999999998 444433222
Q ss_pred -ecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 -RLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 -~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
+.. ...++.|+|.++.||+|+....|.+|-.+...--......-+.+...|.+++|+|++-+|++|+.|+..++|..-
T Consensus 97 lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay 176 (361)
T KOG1523|consen 97 LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY 176 (361)
T ss_pred EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEe
Confidence 222 367799999999999999999999998876553222222334567889999999999999999999999999752
Q ss_pred -----C-------------CeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCce-eEEEecCCcceeEE
Q 024185 167 -----G-------------GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN-EVACWNGNIGVVAC 227 (271)
Q Consensus 167 -----~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~ 227 (271)
+ |+....+. ...+++..+.|+|+|+.|+..+.|..+.+-|..... .+.......-+..+
T Consensus 177 IK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls 254 (361)
T KOG1523|consen 177 IKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLS 254 (361)
T ss_pred eeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCcee
Confidence 1 11111121 334679999999999999999999999999976654 33333323356677
Q ss_pred EEEecCCcEEEEe
Q 024185 228 LKWAPRRAMFVAA 240 (271)
Q Consensus 228 ~~~s~~~~~l~~~ 240 (271)
+.|-.+...++.|
T Consensus 255 ~~~ise~~vv~ag 267 (361)
T KOG1523|consen 255 VSWISENSVVAAG 267 (361)
T ss_pred eEeecCCceeecC
Confidence 7776555444443
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-16 Score=125.74 Aligned_cols=207 Identities=14% Similarity=0.134 Sum_probs=156.9
Q ss_pred ecceeEEeeecceeeEEEEeec----cceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc--
Q 024185 9 PITQALLFARQNIILILLESLC----GIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA-- 82 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~-- 82 (271)
|....++.+..++.+.+|.... ...+...+-.|.+|.++|-|+++++.+.. +.+|+.||+|+.|++...
T Consensus 304 ~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~-----~ysgg~Dg~I~~w~~p~n~d 378 (577)
T KOG0642|consen 304 PSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH-----CYSGGIDGTIRCWNLPPNQD 378 (577)
T ss_pred CCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceE-----EEeeccCceeeeeccCCCCC
Confidence 3445566666677777666521 12233456679999999999999999998 889999999999966421
Q ss_pred --------ceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcce---------EEEecC---------
Q 024185 83 --------SFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD---------TFLVGG--------- 134 (271)
Q Consensus 83 --------~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~~--------- 134 (271)
.....+.+|. ++.+++|+....|++++.||+++.|+........+. ...+..
T Consensus 379 p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s 458 (577)
T KOG0642|consen 379 PDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLAS 458 (577)
T ss_pred cccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhh
Confidence 1233456664 566999999999999999999999997654320000 000000
Q ss_pred -----------------------------CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceee
Q 024185 135 -----------------------------DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE 185 (271)
Q Consensus 135 -----------------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 185 (271)
....+.-+.++|.+...+++..|+.|+++|..+++.++....|... +++
T Consensus 459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~s--vts 536 (577)
T KOG0642|consen 459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDS--VTS 536 (577)
T ss_pred cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccce--ecc
Confidence 0033566788888889999999999999999999999988888776 999
Q ss_pred EEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc
Q 024185 186 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI 222 (271)
Q Consensus 186 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 222 (271)
+++.|+|-+|++++.|+.+++|.+....++.....|.
T Consensus 537 lai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 537 LAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 9999999999999999999999998888877766664
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-17 Score=138.39 Aligned_cols=198 Identities=13% Similarity=0.100 Sum_probs=154.4
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCc--ceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
+.+|-++|.|..|...|.+ +++|+.|..++||..+++.++....+|+. +-++.+.+.-++++++.|..|++|.
T Consensus 186 LlgH~naVyca~fDrtg~~-----Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRY-----IITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHhhhhheeeeeeccccce-----EeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 5688899999999999999 89999999999999999999999999964 4588888888999999999999999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC--------------------------------
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY-------------------------------- 166 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~-------------------------------- 166 (271)
+..+.. ...+.+|++.|++++|+|-. +.+.||++++||.+
T Consensus 261 l~~~~p----vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 261 LPDGAP----VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL 332 (1113)
T ss_pred cCCCch----HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence 999886 66678999999999999943 66778888888876
Q ss_pred ---------------------------------------------------CCeEEEEeecCCCCCceeeEEECCCCC-E
Q 024185 167 ---------------------------------------------------GGEKRCGFSLEPSPNTNTEATFTPDGQ-Y 194 (271)
Q Consensus 167 ---------------------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 194 (271)
+|...+.+.+|.. .+..+.++|-.. .
T Consensus 333 Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvLd~Hpfn~ri 410 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVLDVHPFNPRI 410 (1113)
T ss_pred cccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc--ceeeeeecCCCcHh
Confidence 0000111111111 133355555433 3
Q ss_pred EEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 195 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
..+++.||...|||+-.|.+++......+.+..-+||+||..++... |.+.|.....++
T Consensus 411 ~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 411 AMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred hhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 34788999999999999988876643345677889999999888876 888888765544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=124.62 Aligned_cols=197 Identities=12% Similarity=0.142 Sum_probs=144.1
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK 124 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 124 (271)
.+..++|.|||..++. ..+..+.+||...|..++++++|. +++++|+.||+++++|+.|..|.+|...-...
T Consensus 14 ci~d~afkPDGsqL~l------AAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLIL------AAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEE------ecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 7888999999997422 345679999999999999999995 77899999999999999999999998653221
Q ss_pred ------CcceEEEecC---------------------------CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEE
Q 024185 125 ------GPFDTFLVGG---------------------------DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 171 (271)
Q Consensus 125 ------~~~~~~~~~~---------------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~ 171 (271)
..++...+.. ....+.+++|..||++++.|-.||+|.+-+ .+++..
T Consensus 88 LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek 166 (1081)
T KOG1538|consen 88 LKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEK 166 (1081)
T ss_pred eeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcc
Confidence 0011111110 114578889999999999999999999987 445544
Q ss_pred EEeecCC-CCCceeeEEECCCC-----CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--Ce
Q 024185 172 CGFSLEP-SPNTNTEATFTPDG-----QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SV 243 (271)
Q Consensus 172 ~~~~~~~-~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~ 243 (271)
-.+.... ...+|.+++|+|.. ..++......++.+|.+ +|+.+..-+.-.....|+++-|+|.+++.|+ +.
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccCCCc
Confidence 4444322 22569999999974 36677777777888776 4555553333444567899999999988887 66
Q ss_pred EEEEcCCC
Q 024185 244 LSFWIPNP 251 (271)
Q Consensus 244 v~iw~~~~ 251 (271)
+++|.-+.
T Consensus 246 L~~fTR~G 253 (1081)
T KOG1538|consen 246 LSLFTRDG 253 (1081)
T ss_pred eEEEeecC
Confidence 88886544
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-15 Score=126.81 Aligned_cols=172 Identities=18% Similarity=0.188 Sum_probs=117.7
Q ss_pred CceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecC---CeEEEEeCCCCCCCcceEEEecCCccceEEEEEc
Q 024185 71 ALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS 145 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 145 (271)
+..|.+||.+... .+.+..+. +...+|+|||+.|+.++.+ ..|++||+.+++. .....+.+ ....++|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~--~~l~~~~g---~~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR--KVVASFRG---HNGAPAFS 256 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce--EEEecCCC---ccCceeEC
Confidence 5789999986555 34444433 5669999999999887643 3799999987763 11222333 34468999
Q ss_pred CCCcEEEEEe-cCCeEE--EEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec-CCCcEEEEEcCCc-eeEEEecC
Q 024185 146 NDGKSMLLTT-TNNNIY--VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTR-NEVACWNG 220 (271)
Q Consensus 146 ~~~~~l~~~~-~d~~i~--~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~ 220 (271)
|||+.|+.++ .+|... +||+.+++. ..+..+.. .+..+.|+|||+.++.++ .+|...+|++... .....+ .
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~--~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~ 332 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAG--NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G 332 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCC--CcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c
Confidence 9999988765 577654 557666654 34443433 367799999999877655 5778888876532 222333 3
Q ss_pred CcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCC
Q 024185 221 NIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSN 254 (271)
Q Consensus 221 ~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~ 254 (271)
+.. ....|+|||++|+..+ ..+.+||+.+++.
T Consensus 333 ~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~ 365 (429)
T PRK01742 333 GRG--YSAQISADGKTLVMINGDNVVKQDLTSGST 365 (429)
T ss_pred CCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCe
Confidence 433 4678999999998877 6677799988754
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-15 Score=115.88 Aligned_cols=185 Identities=13% Similarity=0.203 Sum_probs=145.5
Q ss_pred hhhhccCceEEEEEecCcc----eeEEEec-CCcceEEEcCCCC-EEEEEecC--CeEEEEeCCCCCCCcceEEEecCC-
Q 024185 65 LVLLTTALEYGIFVLMLAS----FQGILRL-RGRPTVAFDQQGL-VFAVAMEA--GAIKLFDSRSYDKGPFDTFLVGGD- 135 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~----~~~~~~~-~~~~~~~~~~~~~-~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~- 135 (271)
|++|-.+|.+.+|..+.+. .+..+.. .+...+.-++... .+++|+.. ..+.+||+++.+. .+.-+.-
T Consensus 118 Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q----iw~aKNvp 193 (412)
T KOG3881|consen 118 LITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ----IWSAKNVP 193 (412)
T ss_pred EEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeeccccee----eeeccCCC
Confidence 6688899999999988433 2333333 3444466666554 55668888 7899999988754 3332221
Q ss_pred --------ccceEEEEEcCC--CcEEEEEecCCeEEEEECCCCe-EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcE
Q 024185 136 --------TAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL 204 (271)
Q Consensus 136 --------~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 204 (271)
+-.++++.|-+. ...|++++.-+.+++||.+.++ ++..+.....+ ++++...|+++++++|..-|.+
T Consensus 194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~--is~~~l~p~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP--ISSTGLTPSGNFIYTGNTKGQL 271 (412)
T ss_pred CccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc--ceeeeecCCCcEEEEecccchh
Confidence 134678889887 8889999999999999998754 56666666555 9999999999999999999999
Q ss_pred EEEEcCCceeEEE-ecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 205 HAWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 205 ~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
..+|++.++.+.. +.+..+.|+++..+|.++++++++ ..+||+|+++.+++
T Consensus 272 ~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 272 AKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred heecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 9999999998876 888899999999999999999999 77999999996543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-15 Score=112.23 Aligned_cols=159 Identities=16% Similarity=0.226 Sum_probs=119.7
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC--CCcEEEEEecCCeEEEEECCC---
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLTTTNNNIYVLDAYG--- 167 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~--- 167 (271)
+.++.|.+-|+++|+++.|++++|||.+......-.......|.+.|..+.|.+ -|+.+|+++.|+++.||.-..
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~ 95 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE 95 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc
Confidence 577999999999999999999999997655543344556778999999999977 489999999999999997521
Q ss_pred ------CeEEEEeecCCCCCceeeEEECCC--CCEEEEecCCCcEEEEEcCCce--------------------------
Q 024185 168 ------GEKRCGFSLEPSPNTNTEATFTPD--GQYVVSGSGDGTLHAWNINTRN-------------------------- 213 (271)
Q Consensus 168 ------~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~-------------------------- 213 (271)
.....++.... ..|+.++|.|. |-.|++++.||.++||+..+.-
T Consensus 96 ~~~~~~Wv~~ttl~Dsr--ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~ 173 (361)
T KOG2445|consen 96 EAHGRRWVRRTTLVDSR--SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCF 173 (361)
T ss_pred ccccceeEEEEEeecCC--cceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcce
Confidence 11222333333 45999999886 6688899999999999752200
Q ss_pred -----------------------------------------eEEEecCCcceeEEEEEecC----CcEEEEeCCe-EEEE
Q 024185 214 -----------------------------------------EVACWNGNIGVVACLKWAPR----RAMFVAASSV-LSFW 247 (271)
Q Consensus 214 -----------------------------------------~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~~-v~iw 247 (271)
.+.++.+|..+|+.++|.|+ ..+||+++++ |+||
T Consensus 174 CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~ 253 (361)
T KOG2445|consen 174 CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIF 253 (361)
T ss_pred EEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEE
Confidence 01123467889999999996 3478888844 9999
Q ss_pred cCCCCC
Q 024185 248 IPNPSS 253 (271)
Q Consensus 248 ~~~~~~ 253 (271)
.+...+
T Consensus 254 ~v~~~~ 259 (361)
T KOG2445|consen 254 KVKVAR 259 (361)
T ss_pred EEeecc
Confidence 998643
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-15 Score=120.23 Aligned_cols=181 Identities=10% Similarity=0.129 Sum_probs=149.2
Q ss_pred hhhhccCceEEEEEecCcceeEEEecC---C--cceEEE------cC--------------CCCEEEEEecCCeEEEEeC
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLR---G--RPTVAF------DQ--------------QGLVFAVAMEAGAIKLFDS 119 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~---~--~~~~~~------~~--------------~~~~l~~~~~d~~i~i~d~ 119 (271)
+|....||.+++||..+++..+.+... . ..+..| +| |...++-|...|.|.+|+.
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~ 87 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSV 87 (541)
T ss_pred EeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEe
Confidence 778899999999999998877776432 1 112233 22 3346778888999999999
Q ss_pred CCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec
Q 024185 120 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 199 (271)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 199 (271)
..++. ...+.-.+|.+.|.++.++.+-..|.+++.|+.+..|+..+++..+.+...... +.+++.+|||+.+++++
T Consensus 88 ~~g~i--t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~--~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 88 AGGEI--TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL--VSSLCISPDGKILLTAS 163 (541)
T ss_pred cCCeE--EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc--cceEEEcCCCCEEEecc
Confidence 99886 334445689999999999999999999999999999999999988888877665 88899999999999887
Q ss_pred CCCcEEEEEcCCceeEEEecCCcceeEEEEEecC-----CcEEEEeC---CeEEEEcCCC
Q 024185 200 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR-----RAMFVAAS---SVLSFWIPNP 251 (271)
Q Consensus 200 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~---~~v~iw~~~~ 251 (271)
+.|++||+.+++.+..|.+|.++|++++|.-+ |.+++++. ..+.+|-.+.
T Consensus 164 --~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 --RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 47999999999999999999999999999887 77777765 4477787655
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=126.92 Aligned_cols=212 Identities=15% Similarity=0.111 Sum_probs=154.2
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe-cC--CcceEEEcC--CCCEEEEEecCCe
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR-LR--GRPTVAFDQ--QGLVFAVAMEAGA 113 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~--~~~~~~~~~--~~~~l~~~~~d~~ 113 (271)
..+.+|++.|+++.|+.+|.+ |+||+.|-.+.|||.-..+.+..+. +| .+.++.|-| +.+.+++|..|..
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~l-----L~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGEL-----LASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhhccccceecceeecCCCCE-----EeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 348899999999999999999 9999999999999998878777774 45 356688988 4568899999999
Q ss_pred EEEEeCCCCCC------CcceEEEecCCccceEEEEEcCCC-cEEEEEecCCeEEEEECCCCeEE-------EEe-ecCC
Q 024185 114 IKLFDSRSYDK------GPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKR-------CGF-SLEP 178 (271)
Q Consensus 114 i~i~d~~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~-------~~~-~~~~ 178 (271)
|+++|+...+. ..........|...|..++-.|++ +.+.++++||+++-+|++..... ..+ ..+.
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 99999975221 011234456788999999999988 78999999999999999863211 100 1111
Q ss_pred CCCceeeEEECCCC-CEEEEecCCCcEEEEEcCC--------ce----------eEEEe-cCCc-----------ceeEE
Q 024185 179 SPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINT--------RN----------EVACW-NGNI-----------GVVAC 227 (271)
Q Consensus 179 ~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~--------~~----------~~~~~-~~~~-----------~~v~~ 227 (271)
.-....++..+|.. .+|+.|+.|-..++||.+. +. ++.-+ ++|- ..++-
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 11236778899864 5788999999999999431 11 11111 2221 12567
Q ss_pred EEEecCCc-EEEEeC-CeEEEEcCCCCCCC
Q 024185 228 LKWAPRRA-MFVAAS-SVLSFWIPNPSSNS 255 (271)
Q Consensus 228 ~~~s~~~~-~l~~~~-~~v~iw~~~~~~~~ 255 (271)
+.|+|+|. +|++-+ ..|+++|+..++..
T Consensus 279 vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred EEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 88999986 555555 66999999877644
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-16 Score=122.89 Aligned_cols=160 Identities=15% Similarity=0.140 Sum_probs=121.7
Q ss_pred ceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEE
Q 024185 94 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG 173 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 173 (271)
.+++|+++|..+++++.||++++|+...... ......|...|.++.|+|||++|++.+.| ..++|+.+++..+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t----~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT----ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh----hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 4699999999999999999999999766654 55566789999999999999999999999 899999999977766
Q ss_pred eecCCCCCceeeEEECCCC---CE--EEEecCCCcEEEEEcCCcee------EEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 174 FSLEPSPNTNTEATFTPDG---QY--VVSGSGDGTLHAWNINTRNE------VACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 174 ~~~~~~~~~v~~~~~~~~~---~~--l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
.......-....+.|+.|+ .+ ++.....+.|..||+...+. .+.+..+ ..|++++.++||++++.|+
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc-CcceeEEEcCCCcEEEEecc
Confidence 6533333346668888776 32 33334456777777653222 1222223 3599999999999999998
Q ss_pred -CeEEEEcCCCCCCCcCCC
Q 024185 242 -SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 242 -~~v~iw~~~~~~~~~~~~ 259 (271)
|.|-|++..+-+......
T Consensus 302 dGsVai~~~~~lq~~~~vk 320 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK 320 (398)
T ss_pred CCcEEEEEeceeeeeEeeh
Confidence 999999998866554443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-15 Score=131.23 Aligned_cols=217 Identities=15% Similarity=0.168 Sum_probs=158.2
Q ss_pred EEEEEcccccceEEeeEEecCC-chhhhhhhhhhccCceEEEEEecCc-------ceeEEEe--cCCcceEEEcCCCCEE
Q 024185 36 MIIEFFATSKGIRRGLFLSACL-QLMIALCLVLLTTALEYGIFVLMLA-------SFQGILR--LRGRPTVAFDQQGLVF 105 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~-~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~--~~~~~~~~~~~~~~~l 105 (271)
..+..+..|...+..++.++.. .+ |++|+.||+|++||.+.- +...++. +..+.++.+.+.+..+
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~-----FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSL-----FVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred eEeehhhhccccccceeecCCCCce-----EEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 5677788888888888887766 77 899999999999998632 1222333 3346778899999999
Q ss_pred EEEecCCeEEEEeCCCCCC---CcceEEE--ecCCccceEEEEEcC-CCc-EEEEEecCCeEEEEECCCCeEEEEeecCC
Q 024185 106 AVAMEAGAIKLFDSRSYDK---GPFDTFL--VGGDTAEVCDIKFSN-DGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEP 178 (271)
Q Consensus 106 ~~~~~d~~i~i~d~~~~~~---~~~~~~~--~~~~~~~v~~~~~s~-~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 178 (271)
|+++.||.|++.++..... ...+... .+.....+..-+|.. ++. .++.+...+.|..||.+......+++...
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 9999999999999876221 0111111 122222233344444 233 67888889999999999887777776666
Q ss_pred CCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec-CCcceeEEEEEecCC---cEEEEeC----CeEEEEcCC
Q 024185 179 SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGVVACLKWAPRR---AMFVAAS----SVLSFWIPN 250 (271)
Q Consensus 179 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~---~~l~~~~----~~v~iw~~~ 250 (271)
..+.|++++.+|.+++++.|+..|.+.+||++-+.++..+. ++..++..+..+|-. ...++++ +.|.+|++.
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 66779999999999999999999999999999988888763 344678888777632 4555543 669999999
Q ss_pred CCCCCcC
Q 024185 251 PSSNSTD 257 (271)
Q Consensus 251 ~~~~~~~ 257 (271)
++.....
T Consensus 1274 ~g~~~~v 1280 (1431)
T KOG1240|consen 1274 TGLRQTV 1280 (1431)
T ss_pred cCcceEE
Confidence 9865443
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-15 Score=109.41 Aligned_cols=155 Identities=22% Similarity=0.327 Sum_probs=107.7
Q ss_pred eeEEecCCchhhhhhhhhh-------ccCceEEEEEec-CcceeEEEec--C-CcceEEEcCCCCEEEEE--ecCCeEEE
Q 024185 50 GLFLSACLQLMIALCLVLL-------TTALEYGIFVLM-LASFQGILRL--R-GRPTVAFDQQGLVFAVA--MEAGAIKL 116 (271)
Q Consensus 50 ~~~~s~~~~~~~~~~l~s~-------~~dg~i~iwd~~-~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~--~~d~~i~i 116 (271)
.+.|+|+|+++++ .+.. +.-+...+|.++ .+.....+.. . .+..++|+|+|+.|++. ..++.|.+
T Consensus 10 ~~~W~~~G~~l~~--~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 10 KLHWQPSGDYLLV--KVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEecccCCEEEE--EEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 3667777776544 2221 112345566553 2233444432 2 36779999999987665 35679999
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec---CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
||++. +. ...+. ...+..+.|+|+|+++++++. .|.+.+||.++.+.+...... .+..++|+|||+
T Consensus 88 yd~~~-~~----i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~----~~t~~~WsPdGr 156 (194)
T PF08662_consen 88 YDVKG-KK----IFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS----DATDVEWSPDGR 156 (194)
T ss_pred EcCcc-cE----eEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC----cEEEEEEcCCCC
Confidence 99973 22 44443 467889999999999999874 477999999988887766432 277899999999
Q ss_pred EEEEecC------CCcEEEEEcCCceeEEEe
Q 024185 194 YVVSGSG------DGTLHAWNINTRNEVACW 218 (271)
Q Consensus 194 ~l~~~~~------dg~i~iwd~~~~~~~~~~ 218 (271)
+++++.. |+.++||+. +|+.+...
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred EEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 9998764 678999998 46666554
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.3e-15 Score=113.46 Aligned_cols=211 Identities=13% Similarity=0.076 Sum_probs=156.4
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccC--ceEEEEEecCcceeEEEe
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTA--LEYGIFVLMLASFQGILR 89 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~ 89 (271)
..|+.+.++|.+..++...+.........+..+ ..+..+.-++..+.+ +++|+.. ..+.+||+++.+ +.+.
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~I----va~GGke~~n~lkiwdle~~~--qiw~ 188 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYI----VATGGKENINELKIWDLEQSK--QIWS 188 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCce----EecCchhcccceeeeecccce--eeee
Confidence 456777788888888877553222222223333 234446666666664 5579988 899999998884 4444
Q ss_pred cCC---------c----ceEEEcCC--CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEE
Q 024185 90 LRG---------R----PTVAFDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 154 (271)
Q Consensus 90 ~~~---------~----~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 154 (271)
... + ..+.|-+. ...|++++.-+.+++||.+.++ .|+..+.+ ...+++++...|+++++++|
T Consensus 189 aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-RPV~~fd~--~E~~is~~~l~p~gn~Iy~g 265 (412)
T KOG3881|consen 189 AKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-RPVAQFDF--LENPISSTGLTPSGNFIYTG 265 (412)
T ss_pred ccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-cceeEecc--ccCcceeeeecCCCcEEEEe
Confidence 332 2 22677776 7889999999999999999655 45555554 46789999999999999999
Q ss_pred ecCCeEEEEECCCCeEEEE-eecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecC
Q 024185 155 TTNNNIYVLDAYGGEKRCG-FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR 233 (271)
Q Consensus 155 ~~d~~i~~~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 233 (271)
..-|.+..||++.++.... +.+-.+. ++++..+|.++++++++-|..++|+|+++.+++...- -....+++-+.++
T Consensus 266 n~~g~l~~FD~r~~kl~g~~~kg~tGs--irsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 266 NTKGQLAKFDLRGGKLLGCGLKGITGS--IRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred cccchhheecccCceeeccccCCccCC--cceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 9999999999999988776 5555544 9999999999999999999999999999977766543 2345677777665
Q ss_pred Cc
Q 024185 234 RA 235 (271)
Q Consensus 234 ~~ 235 (271)
-+
T Consensus 343 ~n 344 (412)
T KOG3881|consen 343 VN 344 (412)
T ss_pred cc
Confidence 43
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.3e-15 Score=121.14 Aligned_cols=173 Identities=16% Similarity=0.143 Sum_probs=119.9
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCc--eEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecC-C--eEEEEeCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTAL--EYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEA-G--AIKLFDSR 120 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d-~--~i~i~d~~ 120 (271)
......|+|+|+.++. +.+.+| .|++||+++++..+....+ ......|+|||+.|+..+.+ + .|+.+|+.
T Consensus 244 ~~~~~~~SPDG~~La~----~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~ 319 (429)
T PRK03629 244 HNGAPAFSPDGSKLAF----ALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN 319 (429)
T ss_pred CcCCeEECCCCCEEEE----EEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC
Confidence 3446889999998433 333344 5888999888765554443 34558999999988877654 3 45555776
Q ss_pred CCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC---CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEE
Q 024185 121 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
+++. ..+..+........|+|||++++..+.+ ..|.+||+.+++.. .+.... ......|+|||++++.
T Consensus 320 ~g~~-----~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~---~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 320 GGAP-----QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTF---LDETPSIAPNGTMVIY 390 (429)
T ss_pred CCCe-----EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCC---CCCCceECCCCCEEEE
Confidence 6542 2222233446678999999999877653 45889999887643 333221 1345889999999998
Q ss_pred ecCCCc---EEEEEcCCceeEEEecCCcceeEEEEEecC
Q 024185 198 GSGDGT---LHAWNINTRNEVACWNGNIGVVACLKWAPR 233 (271)
Q Consensus 198 ~~~dg~---i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 233 (271)
++.++. +.++++ +++....+.+|.+.+...+|+|-
T Consensus 391 ~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 391 SSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 887754 677777 56667778788888999999973
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-14 Score=118.12 Aligned_cols=200 Identities=21% Similarity=0.273 Sum_probs=133.5
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEE-ecCC--eEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVA-MEAG--AIKL 116 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~d~--~i~i 116 (271)
+..+...+....|+|+|+.+++ .........|++||+.+++......... ...++|+||++.|+.. +.++ .|++
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~--~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAY--VSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV 262 (417)
T ss_pred eecCCCceecccCCCCCCEEEE--EEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence 3345556778899999998544 1122233689999998886544333322 3458999999977654 3333 6889
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC---CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
||+.+++. ..+..+........|+|||+.|+..+.. ..|+++|+.+++.. .+..+.. ....+.|+|+|+
T Consensus 263 ~d~~~~~~-----~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~--~~~~~~~spdg~ 334 (417)
T TIGR02800 263 MDLDGKQL-----TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGG--YNASPSWSPDGD 334 (417)
T ss_pred EECCCCCE-----EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC--CccCeEECCCCC
Confidence 99887653 3333444455677999999988876643 36888898877643 3332322 256689999999
Q ss_pred EEEEecCCC---cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-----CeEEEEcCCCC
Q 024185 194 YVVSGSGDG---TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPS 252 (271)
Q Consensus 194 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~v~iw~~~~~ 252 (271)
+++.++.++ .|.+||+.++.. ..+... .......|+|||++|+..+ ..+.+.+....
T Consensus 335 ~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 335 LIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred EEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 999887765 789999887554 333322 2345678999999888775 23666665543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-14 Score=106.26 Aligned_cols=179 Identities=10% Similarity=0.163 Sum_probs=134.2
Q ss_pred CceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCC-CCCcceEEEecCCccceEEEEEcCCC
Q 024185 71 ALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSY-DKGPFDTFLVGGDTAEVCDIKFSNDG 148 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~ 148 (271)
-..+.|||=...+++..+... ++..+.+.++ +|++.- .+.|++|...+. +. ...+.....+....+++-+.+.
T Consensus 74 pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~--l~~~et~~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL--LHVIETRSNPKGLCSLCPTSNK 148 (346)
T ss_pred CceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh--eeeeecccCCCceEeecCCCCc
Confidence 357999997777777777654 4666777654 466665 578999998743 32 3333333333445555544455
Q ss_pred cEEEEEe-cCCeEEEEECCCCeE--EEEeecCCCCCceeeEEECCCCCEEEEecCCCc-EEEEEcCCceeEEEecC--Cc
Q 024185 149 KSMLLTT-TNNNIYVLDAYGGEK--RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT-LHAWNINTRNEVACWNG--NI 222 (271)
Q Consensus 149 ~~l~~~~-~d~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~--~~ 222 (271)
..|+.-+ .-|.|++-|+...+. ...+..|... |.+++++-+|..+|+++..|+ |+|||..+|+.+++++. ..
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~--Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~ 226 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSD--IACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR 226 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCc--eeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch
Confidence 5666544 479999999987665 4667888876 999999999999999999886 89999999999999853 24
Q ss_pred ceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCc
Q 024185 223 GVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNST 256 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~ 256 (271)
..|.+++|||++.+|+++| |+++||.++......
T Consensus 227 A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~ 262 (346)
T KOG2111|consen 227 ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTE 262 (346)
T ss_pred heEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCc
Confidence 5799999999999999999 999999997755433
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8e-15 Score=122.79 Aligned_cols=237 Identities=10% Similarity=0.123 Sum_probs=165.1
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
.++.+|...+..+..+...++ ..++.+..|...+..+.+.|....... +.+++.||.|++||...+..++++..
T Consensus 27 D~k~l~~~~~~~V~VyS~~Tg----~~i~~l~~~~a~l~s~~~~~~~~~~~~--~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 27 DAKFLFLCTGNFVKVYSTATG----ECITSLEDHTAPLTSVIVLPSSENANY--LIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred CCcEEEEeeCCEEEEEecchH----hhhhhcccccCccceeeecCCCccceE--EEEEecCccEEEecCCCcEEEEEEec
Confidence 356777777888888888888 445578999999999999887764323 66899999999999988877666532
Q ss_pred CC-c-----------------------------------------------------------ceEEEcCCCCEEEEEec
Q 024185 91 RG-R-----------------------------------------------------------PTVAFDQQGLVFAVAME 110 (271)
Q Consensus 91 ~~-~-----------------------------------------------------------~~~~~~~~~~~l~~~~~ 110 (271)
+. + .++..++.|.+.+..-
T Consensus 101 ~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~- 179 (792)
T KOG1963|consen 101 NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH- 179 (792)
T ss_pred CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE-
Confidence 21 0 0122222222222222
Q ss_pred CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC--Ce--EEEEeecCCCCCceeeE
Q 024185 111 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG--GE--KRCGFSLEPSPNTNTEA 186 (271)
Q Consensus 111 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~--~~--~~~~~~~~~~~~~v~~~ 186 (271)
+..+.+|+.............-..|...+++.++||++++++++..||+|.+|.--. +. ..+.+.-|... |.++
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~--V~~L 257 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE--VNSL 257 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccc--ccee
Confidence 334556665543310011111224666789999999999999999999999996432 21 23345455544 9999
Q ss_pred EECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
.|+++|.+|++|+..+.+.+|.+.+++ .+-++.-.++|..+.+|||+.+.+... +.|.+-...+......
T Consensus 258 ~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 258 SFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred EEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence 999999999999999999999999988 455666778999999999998765553 7788877755544433
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.5e-14 Score=116.91 Aligned_cols=201 Identities=17% Similarity=0.160 Sum_probs=132.2
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEE-ecCC--eEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVA-MEAG--AIKL 116 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~d~--~i~i 116 (271)
+..+...+....|+|+|+.+++ .........|.+||+++++........+ ....+|+|||++|+.. ..+| .|++
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~--~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAY--VSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred EecCCCceeeeeECCCCCEEEE--EEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 3345566788999999998433 1111123468899998887654333332 3358999999988754 4444 6888
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-C--CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N--NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
||+.+++. ..+..+........|+|||+.++..+. + ..|+++|+.+++..+. ..... ......|+|||+
T Consensus 272 ~d~~~~~~-----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~--~~~~~~~Spdg~ 343 (430)
T PRK00178 272 MDLASRQL-----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGN--YNARPRLSADGK 343 (430)
T ss_pred EECCCCCe-----EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCC--CccceEECCCCC
Confidence 89988763 234445555677899999998877664 3 3688888887765332 22221 134578999999
Q ss_pred EEEEecCC-C--cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-----CeEEEEcCCCCC
Q 024185 194 YVVSGSGD-G--TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSS 253 (271)
Q Consensus 194 ~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~v~iw~~~~~~ 253 (271)
+++..+.+ + .|.++|+.+++... +.. ........|+|||++++.++ ..+.+++.+.+.
T Consensus 344 ~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~ 409 (430)
T PRK00178 344 TLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV 409 (430)
T ss_pred EEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 99877653 3 58889998876533 321 22234568999999887765 347777776543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-14 Score=116.47 Aligned_cols=206 Identities=15% Similarity=0.126 Sum_probs=127.5
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhcc--CceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEEec-CC--e--EE
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTT--ALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVAME-AG--A--IK 115 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-d~--~--i~ 115 (271)
.......-.|||||+.+.. +..... ...|.+.++.+++..+.....+ ....+|+|||+.|+..+. +| . +.
T Consensus 183 ~~~~~~sP~wSPDG~~~~~--~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPY--LYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred CCCCcccceEccCCCceEE--EEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEE
Confidence 4445566899999975221 112223 3467777888877554444333 234899999998887653 22 3 34
Q ss_pred EEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CCe--EEEEECCC-CeEEEEeecCCCCCceeeEEECCC
Q 024185 116 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNN--IYVLDAYG-GEKRCGFSLEPSPNTNTEATFTPD 191 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~--i~~~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~ 191 (271)
.|++..+..... ......+.+.....+|+|||+.|+..+. +|. |+++++.. +.....+..... .+....|+||
T Consensus 261 ~~~~~~g~~g~~-~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~--~~~~p~wSPD 337 (428)
T PRK01029 261 SFSLETGAIGKP-RRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR--NSSCPAWSPD 337 (428)
T ss_pred EeecccCCCCcc-eEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC--CccceeECCC
Confidence 467665321111 1112222234467899999998887663 564 44445532 222333433332 2567899999
Q ss_pred CCEEEEecCC---CcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-----CeEEEEcCCCCCCC
Q 024185 192 GQYVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNS 255 (271)
Q Consensus 192 ~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~v~iw~~~~~~~~ 255 (271)
|++|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+... ..+.++|+.+++..
T Consensus 338 G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 338 GKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 9998876543 369999998887654333 334567899999999877542 45899999877653
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.7e-14 Score=112.42 Aligned_cols=231 Identities=15% Similarity=0.174 Sum_probs=147.8
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceE
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTV 96 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~ 96 (271)
..++.+..++..+. ..+..+......-..+.++|||++ +..++.||.|.++|+.+++.+++++... ...+
T Consensus 13 ~~~~~v~viD~~t~----~~~~~i~~~~~~h~~~~~s~Dgr~-----~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 13 RGSGSVAVIDGATN----KVVARIPTGGAPHAGLKFSPDGRY-----LYVANRDGTVSVIDLATGKVVATIKVGGNPRGI 83 (369)
T ss_dssp GGGTEEEEEETTT-----SEEEEEE-STTEEEEEE-TT-SSE-----EEEEETTSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred cCCCEEEEEECCCC----eEEEEEcCCCCceeEEEecCCCCE-----EEEEcCCCeEEEEECCcccEEEEEecCCCcceE
Confidence 45788888887665 333445544444444779999998 5556789999999999999999997665 4559
Q ss_pred EEcCCCCEEEEEe-cCCeEEEEeCCCCCCCcceEEEe----------------cCCc-----------------------
Q 024185 97 AFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLV----------------GGDT----------------------- 136 (271)
Q Consensus 97 ~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~----------------~~~~----------------------- 136 (271)
++++||++++++. ..+.+.++|.++.+. +..... ..|.
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~--v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEP--VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--E--EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccc--eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 9999999998874 678999999887543 111100 0000
Q ss_pred ----------cceEEEEEcCCCcEEEEE-ecCCeEEEEECCCCeEEEEeecCCC--------------------------
Q 024185 137 ----------AEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPS-------------------------- 179 (271)
Q Consensus 137 ----------~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~-------------------------- 179 (271)
.......|+|++++++.+ ..+..+-++|..+++.+..+.....
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred ccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 223556789999987765 4466888888887765443321000
Q ss_pred --------------------------CCceeeEEECCCCCEEEEe----cCCCcEEEEEcCCceeEEEecCCc-ceeEEE
Q 024185 180 --------------------------PNTNTEATFTPDGQYVVSG----SGDGTLHAWNINTRNEVACWNGNI-GVVACL 228 (271)
Q Consensus 180 --------------------------~~~v~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~ 228 (271)
.+.-..+..+|+++++.+. ...++|.++|.++.+.+..+.... ..+..+
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ 321 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHM 321 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEE
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEecc
Confidence 0011235668999999887 345799999999998888875322 258899
Q ss_pred EEecCCcEEEEeC---C-eEEEEcCCCCCCCcCCC
Q 024185 229 KWAPRRAMFVAAS---S-VLSFWIPNPSSNSTDES 259 (271)
Q Consensus 229 ~~s~~~~~l~~~~---~-~v~iw~~~~~~~~~~~~ 259 (271)
.|++||+.+..+. + .|.+||..+.+......
T Consensus 322 ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 322 EFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 9999999776664 4 79999999988766544
|
... |
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.5e-16 Score=123.44 Aligned_cols=197 Identities=14% Similarity=0.145 Sum_probs=155.0
Q ss_pred ccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec-C-CcceEEEcCCCCEEEEEecCCeEEEEeC
Q 024185 42 ATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL-R-GRPTVAFDQQGLVFAVAMEAGAIKLFDS 119 (271)
Q Consensus 42 ~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 119 (271)
-.|...+..+.|+..|.+++. +...+....|.|.++.....+.-|+. + .+.++.|+|...+|++++. ..|++||+
T Consensus 518 I~~~k~i~~vtWHrkGDYlat--V~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL 594 (733)
T KOG0650|consen 518 IKHPKSIRQVTWHRKGDYLAT--VMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDL 594 (733)
T ss_pred EecCCccceeeeecCCceEEE--eccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEeh
Confidence 346677888999999999655 34445567889999987776655533 2 3566999999999998884 68999999
Q ss_pred CCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECCCCCEEEEe
Q 024185 120 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDGQYVVSG 198 (271)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 198 (271)
...+. ...+......|..++.+|.|..|+.++.|+.+..+|+.-. ++.+++..|... +++++|++.=.++++|
T Consensus 595 ~kqel----vKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a--vr~Va~H~ryPLfas~ 668 (733)
T KOG0650|consen 595 SKQEL----VKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA--VRSVAFHKRYPLFASG 668 (733)
T ss_pred hHHHH----HHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh--hhhhhhccccceeeee
Confidence 87554 3333344567999999999999999999999999999754 556667777765 8999999999999999
Q ss_pred cCCCcEEEEEcC------Cc---eeEEEecCCcce----eEEEEEecCCcEEEEeC--CeEEEE
Q 024185 199 SGDGTLHAWNIN------TR---NEVACWNGNIGV----VACLKWAPRRAMFVAAS--SVLSFW 247 (271)
Q Consensus 199 ~~dg~i~iwd~~------~~---~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~--~~v~iw 247 (271)
+.||++.|+.-. .+ -+++.+.+|... |....|+|...+|++++ |+|++|
T Consensus 669 sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 669 SDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 999999998532 12 235667888654 88899999999999988 789998
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7e-14 Score=117.27 Aligned_cols=239 Identities=11% Similarity=0.113 Sum_probs=156.9
Q ss_pred Eeeecc-eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce
Q 024185 6 FALPIT-QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF 84 (271)
Q Consensus 6 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 84 (271)
+++-.+ ..+..+..+|.+..|.......+....+.++-|...|.+++|+++|.+ |.||+..|.+.+|.+++++
T Consensus 211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~-----LlSGG~E~VLv~Wq~~T~~- 284 (792)
T KOG1963|consen 211 VALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAY-----LLSGGREGVLVLWQLETGK- 284 (792)
T ss_pred EEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCce-----EeecccceEEEEEeecCCC-
Confidence 444344 445555678999988887743444556778899999999999999999 9999999999999999998
Q ss_pred eEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCC-------cceEEEecCCccceEEEEEcCCCcEEEEEe
Q 024185 85 QGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG-------PFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155 (271)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 155 (271)
.+-++.-+ +..+.++||+.+.+....|..|.+..+.+.+.+ +.....-....+-.+.++++|.-+.++..+
T Consensus 285 kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~ 364 (792)
T KOG1963|consen 285 KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG 364 (792)
T ss_pred cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecC
Confidence 44444333 455999999999999999999999887543320 000000001123344555666444455555
Q ss_pred cCCeEEEEECCCCeEEEEee------------------------------------------------------------
Q 024185 156 TNNNIYVLDAYGGEKRCGFS------------------------------------------------------------ 175 (271)
Q Consensus 156 ~d~~i~~~d~~~~~~~~~~~------------------------------------------------------------ 175 (271)
..|.|.+||+-+.+.+..+.
T Consensus 365 ~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~ 444 (792)
T KOG1963|consen 365 HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTF 444 (792)
T ss_pred CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCccee
Confidence 55666666654332222211
Q ss_pred --------cCCCCCceeeEEECCCC-CEEEEecCCCcEEEEEcCCce----------eEEEecCCcceeEEEEEecCCcE
Q 024185 176 --------LEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRN----------EVACWNGNIGVVACLKWAPRRAM 236 (271)
Q Consensus 176 --------~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~s~~~~~ 236 (271)
.|.. ..+..+..+|.. ...++++.||.+++|-+...+ +...-.-|..++++++|+.||..
T Consensus 445 ~L~T~I~~PH~~-~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsl 523 (792)
T KOG1963|consen 445 ILNTKINNPHGN-AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSL 523 (792)
T ss_pred EEEEEEecCCCc-eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcE
Confidence 1111 111112223332 378889999999999883321 22222237788999999999998
Q ss_pred EEEeC-CeEEEEcCCC
Q 024185 237 FVAAS-SVLSFWIPNP 251 (271)
Q Consensus 237 l~~~~-~~v~iw~~~~ 251 (271)
|+.+- +.|.+||..+
T Consensus 524 la~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 524 LAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEecCCEEEEecCCC
Confidence 88876 8899999988
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-15 Score=114.56 Aligned_cols=209 Identities=11% Similarity=0.082 Sum_probs=153.3
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC------cceeEEEecC---CcceEEEcCCCCEEEEEe
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML------ASFQGILRLR---GRPTVAFDQQGLVFAVAM 109 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~---~~~~~~~~~~~~~l~~~~ 109 (271)
+.+.+|.+.|+.+.||.++++ |++|+.|..+++|+++. .++++....| .+.|++|...++++++|.
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~-----L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRF-----LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred hhhhhhccccceeeeccCCeE-----EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence 345689999999999999999 99999999999999863 3455444322 467799999999999999
Q ss_pred cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe-EEEEeecCCCCCceeeEEE
Q 024185 110 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 110 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~ 188 (271)
.+++|...|+++.+. +..+.-....+.|..+..+|-.+.|++.+.++.|.+||.+..+ ....+.....+.....+.|
T Consensus 125 ~~~~VI~HDiEt~qs--i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQS--IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred CcceeEeeeccccee--eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 999999999998874 2222223334589999999999999999999999999998765 2222222233344677899
Q ss_pred CCCCC-EEEEecCCCcEEEEEcCCcee-EEEe------cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 189 TPDGQ-YVVSGSGDGTLHAWNINTRNE-VACW------NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 189 ~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~------~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
+|... +|++.+..+-+.+||.+.... +... +.....-.+..|+|+|+.|.+-- ..-.+||+.+.++
T Consensus 203 ~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 203 HPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred cCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence 99754 667778888899999876432 2221 11111225678999999888775 3356777776544
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-14 Score=121.83 Aligned_cols=237 Identities=13% Similarity=0.136 Sum_probs=157.7
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccc---cceEEeeEEecCCc-hhhhhhhhhhccCceEEEEEe-cCc-
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATS---KGIRRGLFLSACLQ-LMIALCLVLLTTALEYGIFVL-MLA- 82 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~-~~~~~~l~s~~~dg~i~iwd~-~~~- 82 (271)
|....++.+..+-.+..++...+ ..+..|..+ ...|+.+.+-.... -+ +++++.||.|+||+- .++
T Consensus 1074 pf~p~i~~ad~r~~i~vwd~e~~----~~l~~F~n~~~~~t~Vs~l~liNe~D~aL----lLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1074 PFEPQIAAADDRERIRVWDWEKG----RLLNGFDNGAFPDTRVSDLELINEQDDAL----LLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCCceeEEcCCcceEEEEecccC----ceeccccCCCCCCCccceeeeecccchhh----eeeeccCceEEEeccccccc
Confidence 44444444444556666665555 333334333 34566666654332 22 779999999999953 232
Q ss_pred ---ceeEEE---ecC-----C-cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCc
Q 024185 83 ---SFQGIL---RLR-----G-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGK 149 (271)
Q Consensus 83 ---~~~~~~---~~~-----~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 149 (271)
+.+.-. .+. + ...+.|.....+|+++++-..|+|||...... .....+ +....++++.-+. .|+
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~--~~diP~-~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV--VADIPY-GSSTLVTALSADLVHGN 1222 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee--Eeeccc-CCCccceeecccccCCc
Confidence 222222 111 1 23388988888888888788999999987664 222222 2345566665443 478
Q ss_pred EEEEEecCCeEEEEECCCCe---EEEEeecCCCCCceeeEEECCCCCE-EEEecCCCcEEEEEcCCcee--EEEecCCc-
Q 024185 150 SMLLTTTNNNIYVLDAYGGE---KRCGFSLEPSPNTNTEATFTPDGQY-VVSGSGDGTLHAWNINTRNE--VACWNGNI- 222 (271)
Q Consensus 150 ~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~--~~~~~~~~- 222 (271)
.+++|..||.+++||.+... .+...+.|.....|..+.+.+.|-. +++|+.+|.|++||++.... ...+..|.
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence 99999999999999987643 3455666665555888999887654 99999999999999987422 12222332
Q ss_pred --ceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCCc
Q 024185 223 --GVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNST 256 (271)
Q Consensus 223 --~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~~ 256 (271)
+..+++..+++...+|+|+ +.|+||++....+..
T Consensus 1303 yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~ 1339 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNI 1339 (1387)
T ss_pred cCccceeeeeccCCCeeeecCcceEEEEecChhhhcc
Confidence 3589999999999999999 889999998765543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=119.83 Aligned_cols=218 Identities=11% Similarity=0.111 Sum_probs=169.6
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
.+++++...|.+-.++..++...+. +. -...|..+.|-.+.++ ++......+++||- .|..+..+..+
T Consensus 142 rhlllgGrKGHlAa~Dw~t~~L~~E----i~-v~Etv~Dv~~LHneq~------~AVAQK~y~yvYD~-~GtElHClk~~ 209 (545)
T KOG1272|consen 142 RHLLLGGRKGHLAAFDWVTKKLHFE----IN-VMETVRDVTFLHNEQF------FAVAQKKYVYVYDN-NGTELHCLKRH 209 (545)
T ss_pred cEEEecCCccceeeeecccceeeee----ee-hhhhhhhhhhhcchHH------HHhhhhceEEEecC-CCcEEeehhhc
Confidence 4677777777777777776643322 21 2334555666666665 34467788999997 45556666555
Q ss_pred -CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 92 -GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 92 -~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
.+..+.|-|..=+|++++..|.++.-|+.+++. ...+....+.+..++-+|-...+-+|..+|+|.+|.....++
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl----Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL----VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhh----hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 466799999998999999999999999999987 444444567888899999888888999999999999998998
Q ss_pred EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeCCeEEEEc
Q 024185 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWI 248 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~v~iw~ 248 (271)
+..+..|.++ |.++++.++|+|+++.+.|..++|||++.-..+.++.. ..+...+++|..|.+.++-+..+.||.
T Consensus 286 LvKiLcH~g~--V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 286 LVKILCHRGP--VSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred HHHHHhcCCC--cceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecCCeeeeeh
Confidence 8888888877 99999999999999999999999999998887777654 445688999977654444446799995
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.9e-14 Score=115.53 Aligned_cols=196 Identities=16% Similarity=0.172 Sum_probs=127.5
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhcc--CceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEE-ecCC--eEEE
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTT--ALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVA-MEAG--AIKL 116 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~d~--~i~i 116 (271)
.....+....|+|+|+.++. +... ...|++||+.+++........+ ....+|+|||+.|+.. +.+| .|++
T Consensus 215 ~~~~~~~~p~wSPDG~~La~----~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAY----VSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred cCCCcccCceECCCCCEEEE----EEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 34556778999999998433 2222 2368888998877543332222 2358999999988764 5555 4888
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-C--CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N--NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
+|+.+++. ..+..+.......+|+|||+.++..+. + ..|+++|+.+++... +...... ....+|+|||+
T Consensus 291 ~dl~tg~~-----~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~--~~~~~~SpDG~ 362 (448)
T PRK04792 291 VDIATKAL-----TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQ--NLGGSITPDGR 362 (448)
T ss_pred EECCCCCe-----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCC--CcCeeECCCCC
Confidence 88887663 334445556678899999998877664 3 357777887776543 2222221 34478999999
Q ss_pred EEEEecC-CC--cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC---C--eEEEEcCCCC
Q 024185 194 YVVSGSG-DG--TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---S--VLSFWIPNPS 252 (271)
Q Consensus 194 ~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~--~v~iw~~~~~ 252 (271)
+++..+. ++ .|.++|+.+++... +... .......|+|||+.|+..+ + .+.+++.+..
T Consensus 363 ~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 363 SMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred EEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 9887655 33 46667887776533 3222 1223568999999887754 2 3777887544
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=111.33 Aligned_cols=141 Identities=11% Similarity=0.081 Sum_probs=110.3
Q ss_pred hhhhccCceEEEEEecCcceeEEE----------ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCC--CCCcceEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGIL----------RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSY--DKGPFDTF 130 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~----------~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~ 130 (271)
++.|-++|.+.+||+.++..+-.+ ..|. +..+.+.+.-..=++|+.+..+..|.++.. .+......
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 678899999999999987544333 2232 344666655555567777778888887643 32112233
Q ss_pred EecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEc
Q 024185 131 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 209 (271)
Q Consensus 131 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 209 (271)
.++ ...+..+..-||++.+|+++.|++|++|+.++.+++..++.|... |.+++|+|+.+.+|+++.|++|.+|++
T Consensus 248 ~lk--npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsag--vn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 248 TLK--NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAG--VNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred Eec--CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcc--eeEEEeCCCCchhhhccCCceEEeeec
Confidence 333 356889999999999999999999999999999999999988865 999999999999999999999999986
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-14 Score=105.42 Aligned_cols=195 Identities=12% Similarity=0.159 Sum_probs=140.4
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce---eEEEecC--CcceEEEcCCC-CEEEEEecCCeEEEE
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF---QGILRLR--GRPTVAFDQQG-LVFAVAMEAGAIKLF 117 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~--~~~~~~~~~~~-~~l~~~~~d~~i~i~ 117 (271)
+..+.++..|+.-...+ +.+++-|.+..|||++++.. ...+-.| ++.-++|...+ +.||+.+.||.++++
T Consensus 149 ~~aPlTSFDWne~dp~~----igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 149 FCAPLTSFDWNEVDPNL----IGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMF 224 (364)
T ss_pred cCCcccccccccCCcce----eEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEE
Confidence 34466667777655554 55889999999999998732 3344444 56669999866 578899999999999
Q ss_pred eCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEec-CCeEEEEECCCC-eEEEEeecCCCCCceeeEEECCC-CC
Q 024185 118 DSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTT-NNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPD-GQ 193 (271)
Q Consensus 118 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~ 193 (271)
|++..+.. .....-.....+...++|++ |-+++|+-.. ...|.+.|+|.. .++.++..|... |..++|.|. +.
T Consensus 225 DLR~leHS-TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~--VNgIaWaPhS~~ 301 (364)
T KOG0290|consen 225 DLRSLEHS-TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQAS--VNGIAWAPHSSS 301 (364)
T ss_pred Eecccccc-eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCccc--ccceEecCCCCc
Confidence 99986641 11122122246788899998 5567776554 457999999864 567778888876 999999997 56
Q ss_pred EEEEecCCCcEEEEEcCCcee------EEEecCCcceeEEEEEec-CCcEEEEeC-CeEEE
Q 024185 194 YVVSGSGDGTLHAWNINTRNE------VACWNGNIGVVACLKWAP-RRAMFVAAS-SVLSF 246 (271)
Q Consensus 194 ~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~s~-~~~~l~~~~-~~v~i 246 (271)
.+.++++|..+.+||+.+.-. +..+. -.+.|+.+.|++ .+.+++.+. +++.+
T Consensus 302 hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 302 HICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGKKLEI 361 (364)
T ss_pred eeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecCeeeE
Confidence 889999999999999975221 22223 356799999997 567888887 44443
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-13 Score=103.08 Aligned_cols=176 Identities=12% Similarity=0.193 Sum_probs=130.2
Q ss_pred eeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec-CcceeEEEecCC--cceEE
Q 024185 21 IILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM-LASFQGILRLRG--RPTVA 97 (271)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~--~~~~~ 97 (271)
..+..||.... ..+..+ .....|..+.+.++.- ..-..+.|++|... +.+.+..+.... ...++
T Consensus 75 NkviIWDD~k~----~~i~el-~f~~~I~~V~l~r~ri--------Vvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~ 141 (346)
T KOG2111|consen 75 NKVIIWDDLKE----RCIIEL-SFNSEIKAVKLRRDRI--------VVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCS 141 (346)
T ss_pred ceEEEEecccC----cEEEEE-EeccceeeEEEcCCeE--------EEEecCeEEEEEcCCChhheeeeecccCCCceEe
Confidence 45666764433 111112 1245677777877633 22457789999987 455666664432 12355
Q ss_pred EcCC--CCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCe-EEEEECCCCeEEEE
Q 024185 98 FDQQ--GLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN-IYVLDAYGGEKRCG 173 (271)
Q Consensus 98 ~~~~--~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-i~~~d~~~~~~~~~ 173 (271)
..|. ..+||.- -.-|.|++-|+...+.. ....+.+|...|.|++.+.+|..+|++|..|+ |+|||..+|+.+..
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 5553 3455543 45589999999876642 24567799999999999999999999999988 89999999999999
Q ss_pred eecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC
Q 024185 174 FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 174 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
+........+.+++|||++.+|+++++.|+++|+.++.
T Consensus 220 ~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 220 LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 98777778899999999999999999999999998865
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=115.00 Aligned_cols=208 Identities=12% Similarity=0.147 Sum_probs=154.0
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee----------------------------EEEecCC---
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ----------------------------GILRLRG--- 92 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------------------------~~~~~~~--- 92 (271)
+...-+.+..+|||+++ +++|...-.|++||+.+-... +.+..|.
T Consensus 50 ~p~ast~ik~s~DGqY~----lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYL----LATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred CccccceeEecCCCcEE----EEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 34456668999999996 679999999999998643110 0111110
Q ss_pred ------cce----EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEE
Q 024185 93 ------RPT----VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 162 (271)
Q Consensus 93 ------~~~----~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 162 (271)
++. ++++.-.--|+.++....|+-++++.+.. ...+....+.+.++..++-..+|++|+.+|.+..
T Consensus 126 ~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf----L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF----LNPFETDSGELNVVSINEEHGLLACGTEDGVVEF 201 (703)
T ss_pred eeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccc----ccccccccccceeeeecCccceEEecccCceEEE
Confidence 111 34433232355555567899999998875 3334444588999999999999999999999999
Q ss_pred EECCCCeEEEEeecCCC---------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec-CCcceeEEEEEec
Q 024185 163 LDAYGGEKRCGFSLEPS---------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGVVACLKWAP 232 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~ 232 (271)
||.++...+.++..... ...|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. +...+|..+.|.+
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccc
Confidence 99998776666543322 1458999999999999999999999999999988876543 3345789999977
Q ss_pred C--CcEEEEeC-CeEEEEcCCCCCCCcCCC
Q 024185 233 R--RAMFVAAS-SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 233 ~--~~~l~~~~-~~v~iw~~~~~~~~~~~~ 259 (271)
. ++.+++.. ..++|||-.+++.....+
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeecc
Confidence 5 66888888 779999999998766554
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.3e-15 Score=117.40 Aligned_cols=187 Identities=18% Similarity=0.302 Sum_probs=128.6
Q ss_pred CceEEEEEecCccee------EEEecCCcceEEE-----cCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccce
Q 024185 71 ALEYGIFVLMLASFQ------GILRLRGRPTVAF-----DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV 139 (271)
Q Consensus 71 dg~i~iwd~~~~~~~------~~~~~~~~~~~~~-----~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v 139 (271)
...+++|+.+.+... ..+.+.+..|-+| .|.+--+.+|-.-|.+.+.|....+...+......-.+..|
T Consensus 143 g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsv 222 (636)
T KOG2394|consen 143 GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSV 222 (636)
T ss_pred CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccce
Confidence 345777877643211 1233334444444 34566688888889999999876432100011111123689
Q ss_pred EEEEEcCC-CcEEEEEecCCeEEEEECCC--------------CeEEE--EeecC----------CCCCceeeEEECCCC
Q 024185 140 CDIKFSND-GKSMLLTTTNNNIYVLDAYG--------------GEKRC--GFSLE----------PSPNTNTEATFTPDG 192 (271)
Q Consensus 140 ~~~~~s~~-~~~l~~~~~d~~i~~~d~~~--------------~~~~~--~~~~~----------~~~~~v~~~~~~~~~ 192 (271)
+|++|-|. ...++++-.+|.+++||... +.... +-+.+ .....+..++|+|||
T Consensus 223 T~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG 302 (636)
T KOG2394|consen 223 TCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG 302 (636)
T ss_pred EEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCC
Confidence 99999994 44566677899999997531 11111 10111 111358889999999
Q ss_pred CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 193 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
++||+.+.||.++|+|..+.+.+..++..-+...|++|||||+++++|+ .-|.||.+..+++...
T Consensus 303 ~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 303 KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 9999999999999999999998888877778899999999999999999 4499999998877654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-13 Score=113.95 Aligned_cols=173 Identities=20% Similarity=0.259 Sum_probs=120.2
Q ss_pred CceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEec---CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEc
Q 024185 71 ALEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAME---AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS 145 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 145 (271)
...|.++|.+.... +.+..+ .+...+|+|||+.|+..+. +..|++||+.+++. ..+..+.+.+...+|+
T Consensus 181 ~~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-----~~l~~~~g~~~~~~~S 254 (435)
T PRK05137 181 IKRLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-----ELVGNFPGMTFAPRFS 254 (435)
T ss_pred ceEEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-----EEeecCCCcccCcEEC
Confidence 34788888855444 344333 3556999999999888753 46899999988763 2344456677889999
Q ss_pred CCCcEEEE-EecCC--eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CC--cEEEEEcCCceeEEEec
Q 024185 146 NDGKSMLL-TTTNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWN 219 (271)
Q Consensus 146 ~~~~~l~~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~ 219 (271)
|||+.|+. .+.++ .|++||+.+++.. .+..+.. ......|+|||++++..+. +| .|+++|+..++. ..+.
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~--~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt 330 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPA--IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRIS 330 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCC--ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEee
Confidence 99998764 44454 4888898877653 3443332 2566899999999887664 33 688889876554 3343
Q ss_pred CCcceeEEEEEecCCcEEEEeC---C--eEEEEcCCCCC
Q 024185 220 GNIGVVACLKWAPRRAMFVAAS---S--VLSFWIPNPSS 253 (271)
Q Consensus 220 ~~~~~v~~~~~s~~~~~l~~~~---~--~v~iw~~~~~~ 253 (271)
.+.+.+....|+|||+.|+..+ + .+.+||+.++.
T Consensus 331 ~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 331 FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 3445567789999999988764 2 48888876543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-13 Score=114.99 Aligned_cols=205 Identities=17% Similarity=0.205 Sum_probs=129.7
Q ss_pred ecceeEEeeec---ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCc--eEEEEEecCcc
Q 024185 9 PITQALLFARQ---NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTAL--EYGIFVLMLAS 83 (271)
Q Consensus 9 ~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~ 83 (271)
|..+.+++... +..+..++...+.. .. +....+......|+|+|+.+++ +.+.+| .|++||+.+++
T Consensus 213 pDg~~la~~s~~~~~~~l~~~dl~~g~~--~~---l~~~~g~~~~~~~SpDG~~l~~----~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 213 PDGKKLAYVSFERGRSAIYVQDLATGQR--EL---VASFRGINGAPSFSPDGRRLAL----TLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred CCCCEEEEEecCCCCcEEEEEECCCCCE--EE---eccCCCCccCceECCCCCEEEE----EEeCCCCceEEEEECCCCC
Confidence 34455665532 23455566544421 11 2233344556899999997433 334444 69999998887
Q ss_pred eeEEEecCC-cceEEEcCCCCEEEEEec-CC--eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC-
Q 024185 84 FQGILRLRG-RPTVAFDQQGLVFAVAME-AG--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN- 158 (271)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~- 158 (271)
..+...... ....+|+|||++|+.++. +| .|+++|+.+++. ..... +......++|+|||++++..+.++
T Consensus 284 ~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt~--~g~~~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 284 LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLTF--QGNYNARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEeec--CCCCccCEEECCCCCEEEEEECCCC
Confidence 544333222 244899999998887764 34 477777766553 22222 223455789999999998876433
Q ss_pred --eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC---CcEEEEEcCCceeEEEecCCcceeEEEEEec
Q 024185 159 --NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAP 232 (271)
Q Consensus 159 --~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 232 (271)
.|.+||+.+++.. .+... . ....+.|+|||++++..+.+ +.|.++++. +.....+..+.+.+..++|+|
T Consensus 359 ~~~I~v~d~~~g~~~-~Lt~~-~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 359 QYRIAVMDLSTGSVR-TLTPG-S--LDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ceeEEEEECCCCCeE-ECCCC-C--CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 6999999887754 33322 1 24457999999988876653 458888884 455666665666778888887
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.5e-14 Score=115.43 Aligned_cols=223 Identities=16% Similarity=0.157 Sum_probs=153.5
Q ss_pred eeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce--eEEE----ecCCcc
Q 024185 21 IILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF--QGIL----RLRGRP 94 (271)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~----~~~~~~ 94 (271)
+.+.+|+.... ..+.. .-.....+.++.|+|....+ ++.|..+|.|.+||++.+.. ...+ ..|..+
T Consensus 222 ~~~~vW~~~~p-~~Pe~---~~~~~s~v~~~~f~p~~p~l----l~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~ 293 (555)
T KOG1587|consen 222 GVLLVWSLKNP-NTPEL---VLESPSEVTCLKFCPFDPNL----LAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEP 293 (555)
T ss_pred ceEEEEecCCC-CCceE---EEecCCceeEEEeccCCcce----EEeeccCceEEEEEccCCCCCCCcccccccccCCcC
Confidence 35666666555 22221 22345678999999988775 66999999999999987764 2222 334444
Q ss_pred e--EEEcCCC--CEEEEEecCCeEEEEeCCCCCCCcceEEEec---------CCccceEEEEEcC-CCcEEEEEecCCeE
Q 024185 95 T--VAFDQQG--LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG---------GDTAEVCDIKFSN-DGKSMLLTTTNNNI 160 (271)
Q Consensus 95 ~--~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------~~~~~v~~~~~s~-~~~~l~~~~~d~~i 160 (271)
+ +.|..+. .-+++++.||.|..|+++.... |.....+. .....+++++|.+ +...++.|+.+|.|
T Consensus 294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~-P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v 372 (555)
T KOG1587|consen 294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSL-PVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV 372 (555)
T ss_pred eEEEEEeccCCCCceEEEecCCcEeeeecccccc-chhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEE
Confidence 4 6675544 4499999999999998875432 11111110 1224688999998 56778999999998
Q ss_pred EEEECCCCeE--------EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC-CceeEEEecCCcceeEEEEEe
Q 024185 161 YVLDAYGGEK--------RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN-TRNEVACWNGNIGVVACLKWA 231 (271)
Q Consensus 161 ~~~d~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s 231 (271)
.--+....+. ...+..|.+ .+..+.++|-+..++..+.|-+++||... ...++..+..+...+++++||
T Consensus 373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g--~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWS 450 (555)
T KOG1587|consen 373 YKGCRKGYTPAPEVSYKGHSTFITHIG--PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWS 450 (555)
T ss_pred EEEeccCCcccccccccccccccccCc--ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEc
Confidence 8744332211 223334444 49999999987766655559999999988 677788887788889999999
Q ss_pred cCCc-EEEEeC--CeEEEEcCCCCCC
Q 024185 232 PRRA-MFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 232 ~~~~-~l~~~~--~~v~iw~~~~~~~ 254 (271)
|... .++++. |.+.+||+.....
T Consensus 451 ptrpavF~~~d~~G~l~iWDLl~~~~ 476 (555)
T KOG1587|consen 451 PTRPAVFATVDGDGNLDIWDLLQDDE 476 (555)
T ss_pred CcCceEEEEEcCCCceehhhhhcccc
Confidence 9765 555665 9999999966543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-13 Score=114.14 Aligned_cols=175 Identities=14% Similarity=0.109 Sum_probs=111.8
Q ss_pred ceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecC---CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC
Q 024185 72 LEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 147 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 147 (271)
..+.++|.+........... .+...+|+|||+.|+..+.+ ..|++||+.+++. ..+....+.....+|+||
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-----~~l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-----RVVANFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-----EEeecCCCCccceEECCC
Confidence 45667776433323222222 34568999999999887643 3699999988763 223333455678999999
Q ss_pred CcEEEE-EecCCeEEEE--ECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CCcEEEEEc--CCceeEEEecCC
Q 024185 148 GKSMLL-TTTNNNIYVL--DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNI--NTRNEVACWNGN 221 (271)
Q Consensus 148 ~~~l~~-~~~d~~i~~~--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~~~~~~~~~ 221 (271)
|+.|+. .+.++...+| |+..++ ...+..+.. ......|+|||++++..+. +|...+|.+ .+++... +..+
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~--~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~ 326 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSG--IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFT 326 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC-cEECCCCCC--CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecC
Confidence 998875 5667765555 555444 344443332 2556899999998886654 456666654 4444322 2222
Q ss_pred cceeEEEEEecCCcEEEEeC--C---eEEEEcCCCCCCC
Q 024185 222 IGVVACLKWAPRRAMFVAAS--S---VLSFWIPNPSSNS 255 (271)
Q Consensus 222 ~~~v~~~~~s~~~~~l~~~~--~---~v~iw~~~~~~~~ 255 (271)
.......+|+|||++++..+ + .|.+||+.+++..
T Consensus 327 g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 327 GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 23345688999999988765 2 5999999877643
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=8e-13 Score=106.57 Aligned_cols=186 Identities=12% Similarity=0.072 Sum_probs=130.3
Q ss_pred hhhccCceEEEEEecCcceeEEEecCC-cce-EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEE
Q 024185 66 VLLTTALEYGIFVLMLASFQGILRLRG-RPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK 143 (271)
Q Consensus 66 ~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 143 (271)
++-..++.|.+.|.++.+.+..+.... ... +.++|||+++++++.||.|.++|+.+.+. ...+.. ......++
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~----v~~i~~-G~~~~~i~ 84 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV----VATIKV-GGNPRGIA 84 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE----EEEEE--SSEEEEEE
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE----EEEEec-CCCcceEE
Confidence 456778999999999999999998654 333 78999999999999999999999999885 333333 24568899
Q ss_pred EcCCCcEEEEEe-cCCeEEEEECCCCeEEEEeecCCC-----CCceeeEEECCCCCEE-EEecCCCcEEEEEcCCceeEE
Q 024185 144 FSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLEPS-----PNTNTEATFTPDGQYV-VSGSGDGTLHAWNINTRNEVA 216 (271)
Q Consensus 144 ~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~ 216 (271)
+|+||+++++++ .++.+.++|.++.+.++.+..... ...+..+..+|....+ ++--+.+.|.+.|....+.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999998776 589999999999999888754322 1246667778888844 455556889998987655433
Q ss_pred --EecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCCCcC
Q 024185 217 --CWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 217 --~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~~~~ 257 (271)
.+. -........|+|++++++.+. +.+-++|.+++++...
T Consensus 165 ~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 165 VTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp EEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred eeeec-ccccccccccCcccceeeecccccceeEEEeeccceEEEE
Confidence 333 233457889999999887764 7799999988876544
|
... |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-14 Score=107.48 Aligned_cols=231 Identities=13% Similarity=0.050 Sum_probs=145.0
Q ss_pred eeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE-ecCCcc
Q 024185 16 FARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL-RLRGRP 94 (271)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~ 94 (271)
....++.+..++.....+-+. +......+..+.|||+|+.+ +.+...|-.|.+|.+.+.+....- ..+++.
T Consensus 66 ~~yk~~~vqvwsl~Qpew~ck----Ideg~agls~~~WSPdgrhi----L~tseF~lriTVWSL~t~~~~~~~~pK~~~k 137 (447)
T KOG4497|consen 66 VAYKDPKVQVWSLVQPEWYCK----IDEGQAGLSSISWSPDGRHI----LLTSEFDLRITVWSLNTQKGYLLPHPKTNVK 137 (447)
T ss_pred eeeccceEEEEEeecceeEEE----eccCCCcceeeeECCCcceE----eeeecceeEEEEEEeccceeEEecccccCce
Confidence 334566888887776655444 55566778889999999775 568889999999999887654322 344566
Q ss_pred eEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEe
Q 024185 95 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF 174 (271)
Q Consensus 95 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 174 (271)
.++|+|||++.+..+.-.....+++..-+. ......++-.+-..+.+.|+|||+.|++ ||.--.-.+..+
T Consensus 138 g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~-W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aY 207 (447)
T KOG4497|consen 138 GYAFHPDGQFCAILSRRDCKDYVQISSCKA-WILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAY 207 (447)
T ss_pred eEEECCCCceeeeeecccHHHHHHHHhhHH-HHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeee
Confidence 799999999988887542211111111000 0001112223445678899999987765 432111111112
Q ss_pred ecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE--------------------------------------
Q 024185 175 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA-------------------------------------- 216 (271)
Q Consensus 175 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------------------------------- 216 (271)
... -.+..+.|+|.+++++.|+.|+.+++.+--+.+...
T Consensus 208 e~~---lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~ 284 (447)
T KOG4497|consen 208 ERG---LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDL 284 (447)
T ss_pred eec---cceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcc
Confidence 211 227779999999999999999988876532222110
Q ss_pred ----------------------Ee------cCCcceeEEEEEecCCcEEEEeC----CeEEEEcCCCCCCCcCCC-CCCc
Q 024185 217 ----------------------CW------NGNIGVVACLKWAPRRAMFVAAS----SVLSFWIPNPSSNSTDES-TDPQ 263 (271)
Q Consensus 217 ----------------------~~------~~~~~~v~~~~~s~~~~~l~~~~----~~v~iw~~~~~~~~~~~~-~~~~ 263 (271)
.+ ....-.+.-++|++|..++++-. +.+-+||++..++..... ..|+
T Consensus 285 ~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pi 364 (447)
T KOG4497|consen 285 EAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPI 364 (447)
T ss_pred ccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccce
Confidence 00 11123466799999999999986 679999999887655432 3455
Q ss_pred cccc
Q 024185 264 ATVK 267 (271)
Q Consensus 264 ~~~~ 267 (271)
+...
T Consensus 365 raf~ 368 (447)
T KOG4497|consen 365 RAFE 368 (447)
T ss_pred eEEE
Confidence 5443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-11 Score=98.38 Aligned_cols=205 Identities=17% Similarity=0.196 Sum_probs=133.1
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC-cceeEE---Ee--c----------CCcceEEEcCCCCEEEEEe
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML-ASFQGI---LR--L----------RGRPTVAFDQQGLVFAVAM 109 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~---~~--~----------~~~~~~~~~~~~~~l~~~~ 109 (271)
..-..++++|++++++ ++.-.+|.+.++++.. +..... +. + ....++.++|+++++++..
T Consensus 87 ~~p~~i~~~~~g~~l~----vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLY----VANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp SCEEEEEECTTSSEEE----EEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred CCcEEEEEecCCCEEE----EEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 3444588999999852 3555799999999976 332222 21 1 1123589999999888874
Q ss_pred c-CCeEEEEeCCCCCC--CcceEEEecCCccceEEEEEcCCCcEEEEEec-CCeEEEEECC--CCeE--EEEeecC----
Q 024185 110 E-AGAIKLFDSRSYDK--GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAY--GGEK--RCGFSLE---- 177 (271)
Q Consensus 110 ~-d~~i~i~d~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~--~~~~--~~~~~~~---- 177 (271)
. ...|.+|++..... .+.....+ ......+.+.|+|+++++++..+ ++.|.++++. +++. +..+...
T Consensus 163 lG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 163 LGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp TTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred cCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 3 45899999977652 11122222 23456889999999999877765 7889999987 4432 2222211
Q ss_pred CCCCceeeEEECCCCCEEEEecC-CCcEEEEEcC--Cce--eEEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcC
Q 024185 178 PSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNIN--TRN--EVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIP 249 (271)
Q Consensus 178 ~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~ 249 (271)
........+.++|||++|+++.. .++|.+|++. +++ .+..+.......+.++++|+|++|+++. +.|.+|++
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 11124677999999999988765 5789999993 233 3344443344478999999999999886 77999876
Q ss_pred --CCCCCC
Q 024185 250 --NPSSNS 255 (271)
Q Consensus 250 --~~~~~~ 255 (271)
+++.+.
T Consensus 322 d~~tG~l~ 329 (345)
T PF10282_consen 322 DPDTGKLT 329 (345)
T ss_dssp ETTTTEEE
T ss_pred eCCCCcEE
Confidence 455543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.6e-13 Score=103.32 Aligned_cols=234 Identities=13% Similarity=0.118 Sum_probs=162.7
Q ss_pred ceeEEeeecceeeEEEEeeccc--eeeEEEEEc-ccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 11 TQALLFARQNIILILLESLCGI--YQCMIIEFF-ATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
.+-|+-+..+....+|+..... .-+..+... .+|...|.+++|.....+ +.+|+.+++|.+-|+++.+.+..
T Consensus 68 ~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~-----~~SG~~~~~VI~HDiEt~qsi~V 142 (609)
T KOG4227|consen 68 DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRF-----LYSGERWGTVIKHDIETKQSIYV 142 (609)
T ss_pred CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCee-----EecCCCcceeEeeecccceeeee
Confidence 3445555556666666543221 112223333 345688999999998888 88999999999999999998877
Q ss_pred EecC----CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEE
Q 024185 88 LRLR----GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYV 162 (271)
Q Consensus 88 ~~~~----~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~ 162 (271)
+... .++.+..+|-.+.|++.+.++.|.+||.+..+. +...+.+.........+.|+|. ..+|++.+..+-+-+
T Consensus 143 ~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~-~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~ 221 (609)
T KOG4227|consen 143 ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN-PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNV 221 (609)
T ss_pred ecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC-CCceeeecCCCccceeeeecCCCceeEEeccccCCCCc
Confidence 7543 356689999999999999999999999987652 3445555666677888999995 556777788888899
Q ss_pred EECCCCeE--------------------------------------EEEeecCC----------CC------CceeeEEE
Q 024185 163 LDAYGGEK--------------------------------------RCGFSLEP----------SP------NTNTEATF 188 (271)
Q Consensus 163 ~d~~~~~~--------------------------------------~~~~~~~~----------~~------~~v~~~~~ 188 (271)
||.+..+. ...+..+. ++ ..+.+++|
T Consensus 222 ~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F 301 (609)
T KOG4227|consen 222 FDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTF 301 (609)
T ss_pred eeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeee
Confidence 99763210 00000010 00 12334455
Q ss_pred CCCCCEEEEecCCCcEEEEEcCC----------c-------------eeEEEecCCcceeEEEEEecCCcEEEEeC--Ce
Q 024185 189 TPDGQYVVSGSGDGTLHAWNINT----------R-------------NEVACWNGNIGVVACLKWAPRRAMFVAAS--SV 243 (271)
Q Consensus 189 ~~~~~~l~~~~~dg~i~iwd~~~----------~-------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~ 243 (271)
.-|- -+++|+.+-.|++|.+.. | +.+..+++|.+-++.+.|+|...+|++.+ +.
T Consensus 302 ~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~ 380 (609)
T KOG4227|consen 302 IDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENS 380 (609)
T ss_pred ecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhh
Confidence 4333 378888888899998753 1 12345689999999999999998888887 77
Q ss_pred EEEEcCCC
Q 024185 244 LSFWIPNP 251 (271)
Q Consensus 244 v~iw~~~~ 251 (271)
+++|....
T Consensus 381 ~KlWS~~r 388 (609)
T KOG4227|consen 381 FKLWSDHR 388 (609)
T ss_pred eecccccc
Confidence 99998654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-14 Score=112.99 Aligned_cols=231 Identities=22% Similarity=0.301 Sum_probs=170.8
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC------
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR------ 91 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------ 91 (271)
..++++..-........ .....+..|.+.+..++.-|+..+. |.+++.|+.+.-+|++.+.+...+...
T Consensus 206 s~dgqvr~s~i~~t~~~-e~t~rl~~h~g~vhklav~p~sp~~----f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYV-ENTKRLAPHEGPVHKLAVEPDSPKP----FLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred cccCceeeeeeccccce-ecceecccccCccceeeecCCCCCc----ccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 44565555444332211 2234467889999999999998875 679999999999999887655444221
Q ss_pred --CcceEEEcCCCC-EEEEEecCCeEEEEeCCCCCCCc----ceEE----EecCCccceEEEEEcCCCcEEEEEecCCeE
Q 024185 92 --GRPTVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGP----FDTF----LVGGDTAEVCDIKFSNDGKSMLLTTTNNNI 160 (271)
Q Consensus 92 --~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~----~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 160 (271)
....++..|... .+++++.|..+++||.+.-.... +..+ ......-.|++++|+.++.-|+++..|-.|
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI 360 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence 123478888664 89999999999999987543210 1111 111233569999999888888888888899
Q ss_pred EEEECCC--C----------eEEE-EeecCCCCCceeeEEE-CCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeE
Q 024185 161 YVLDAYG--G----------EKRC-GFSLEPSPNTNTEATF-TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVA 226 (271)
Q Consensus 161 ~~~d~~~--~----------~~~~-~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 226 (271)
+++.-.- | ..+. .+++|.+...|..+-| -|..+|+++|+.-|.|.||+-.+++.+..+.+...-|+
T Consensus 361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVN 440 (559)
T KOG1334|consen 361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVN 440 (559)
T ss_pred EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEe
Confidence 9995321 2 2223 3788888777877765 68899999999999999999999999999988777999
Q ss_pred EEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 227 CLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 227 ~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
|+.-+|.-..||+++ .+|+||...+.+
T Consensus 441 CLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 441 CLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ccCCCCCCchhhccCCccceeeecCCccc
Confidence 999999999999998 789999985543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-11 Score=97.20 Aligned_cols=224 Identities=9% Similarity=0.023 Sum_probs=151.2
Q ss_pred eeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhc---------cCceEEEEEecCcceeEEEecC
Q 024185 21 IILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLT---------TALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
+.+..++.... ..+..+........ + +||+++.+++ +.+ .+..|.+||..+.+.+..+...
T Consensus 27 ~~v~ViD~~~~----~v~g~i~~G~~P~~-~-~spDg~~lyv----a~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p 96 (352)
T TIGR02658 27 TQVYTIDGEAG----RVLGMTDGGFLPNP-V-VASDGSFFAH----ASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP 96 (352)
T ss_pred ceEEEEECCCC----EEEEEEEccCCCce-e-ECCCCCEEEE----EeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence 57778887666 33333443333332 4 9999998544 445 7899999999999999888743
Q ss_pred C---------cceEEEcCCCCEEEEEe-c-CCeEEEEeCCCCCCCcceEEEecCCc------------------------
Q 024185 92 G---------RPTVAFDQQGLVFAVAM-E-AGAIKLFDSRSYDKGPFDTFLVGGDT------------------------ 136 (271)
Q Consensus 92 ~---------~~~~~~~~~~~~l~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~------------------------ 136 (271)
. ...++++|||+++++.. . +..|.+.|+.+++. .......+..
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv--v~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~ 174 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF--VRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGY 174 (352)
T ss_pred CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE--EEEEeCCCCcEEEEecCCccEEEeecCceEEEEe
Confidence 2 22589999999999875 3 68999999988664 1111110000
Q ss_pred -----cceEEE--------------EEcC-CCcEEEEEecCCeEEEEECCCC-----eEEEEeecC-----CCCCceeeE
Q 024185 137 -----AEVCDI--------------KFSN-DGKSMLLTTTNNNIYVLDAYGG-----EKRCGFSLE-----PSPNTNTEA 186 (271)
Q Consensus 137 -----~~v~~~--------------~~s~-~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~-----~~~~~v~~~ 186 (271)
...... .|++ +|++++.... |+|.+.|+... +....+... -.+....-+
T Consensus 175 d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 175 GTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred cCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 001111 2344 7777777666 99999996443 222222211 122334459
Q ss_pred EECCCCCEEEEec----------CCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCc-EEEEeC---CeEEEEcCCCC
Q 024185 187 TFTPDGQYVVSGS----------GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS---SVLSFWIPNPS 252 (271)
Q Consensus 187 ~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~---~~v~iw~~~~~ 252 (271)
+++|+++.++... ..+.|.++|..+++.+..+.. ...+..++++||++ +|++.+ ++|.+.|..++
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 9999999888743 125799999999999998864 34689999999999 777665 77999999999
Q ss_pred CCCcCC
Q 024185 253 SNSTDE 258 (271)
Q Consensus 253 ~~~~~~ 258 (271)
+.....
T Consensus 333 k~i~~i 338 (352)
T TIGR02658 333 KELSSV 338 (352)
T ss_pred eEEeee
Confidence 877765
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-12 Score=108.54 Aligned_cols=175 Identities=19% Similarity=0.199 Sum_probs=118.9
Q ss_pred CceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEEecC---CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC
Q 024185 71 ALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN 146 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 146 (271)
...|.++|.........+.... ....+|+|||++|+.+..+ ..|++||+.+++. ..+..+.+.+.+++|+|
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-----~~~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-----EKVASFPGMNGAPAFSP 243 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-----EEeecCCCCccceEECC
Confidence 3457777875444433333332 4558999999999887643 4799999988763 22333455677789999
Q ss_pred CCcEEEEE-ecC--CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CC--cEEEEEcCCceeEEEecC
Q 024185 147 DGKSMLLT-TTN--NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNG 220 (271)
Q Consensus 147 ~~~~l~~~-~~d--~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~ 220 (271)
||+.|+.. +.+ ..|++||+.+++... +..+.. ......|+|||++++..+. ++ .|+++|+.+++.. .+..
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~--~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~ 319 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPG--IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF 319 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCC--CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec
Confidence 99987754 333 359999998776433 333322 2446799999998876654 33 5888888776643 3443
Q ss_pred CcceeEEEEEecCCcEEEEeC--C---eEEEEcCCCCCC
Q 024185 221 NIGVVACLKWAPRRAMFVAAS--S---VLSFWIPNPSSN 254 (271)
Q Consensus 221 ~~~~v~~~~~s~~~~~l~~~~--~---~v~iw~~~~~~~ 254 (271)
+......+.|+|+|++++.++ + .|.+||+.++..
T Consensus 320 ~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 320 RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 455667889999999888775 2 689999887543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-13 Score=102.44 Aligned_cols=196 Identities=15% Similarity=0.166 Sum_probs=129.6
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc----c--------eeEEEe--cC-CcceEEEcCCCCEEEEE
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA----S--------FQGILR--LR-GRPTVAFDQQGLVFAVA 108 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~--------~~~~~~--~~-~~~~~~~~~~~~~l~~~ 108 (271)
....+.+++|-|.+... |+.|+.. -|.+|..+.. . ..+.++ +| .+..+.|.+||..++++
T Consensus 139 sQrnvtclawRPlsase----lavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tA 213 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASE----LAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTA 213 (445)
T ss_pred hhcceeEEEeccCCcce----eeeeecc-eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeec
Confidence 45679999999987652 4455554 4889976421 1 112222 33 25669999999999988
Q ss_pred ec-CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC-CeEEEEeecCCCCCceeeE
Q 024185 109 ME-AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEA 186 (271)
Q Consensus 109 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~v~~~ 186 (271)
+. +..|.|||..++...|+.. ...+.++-+.|||||.+|+++..|+..++|+... ....+-..+. +.|...
T Consensus 214 S~gsssi~iWdpdtg~~~pL~~----~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs---grvqta 286 (445)
T KOG2139|consen 214 SFGSSSIMIWDPDTGQKIPLIP----KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS---GRVQTA 286 (445)
T ss_pred ccCcceEEEEcCCCCCcccccc----cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC---Cceeee
Confidence 64 5689999999988744442 2346789999999999999999999999996433 3333322222 248899
Q ss_pred EECCCCCEEEEecCCCcEEEEEcCC-ce-----------e---EEEe-----cC----CcceeEEEEEecCCcEEEEeC-
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNINT-RN-----------E---VACW-----NG----NIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~~-~~-----------~---~~~~-----~~----~~~~v~~~~~s~~~~~l~~~~- 241 (271)
+|+|+|++|+..+.. .-.+|.+.. ++ . +..+ .. -.+.+.+++|.|.|.+|++.-
T Consensus 287 cWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 287 CWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred eecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 999999987755432 233443321 00 0 1111 11 145788999999999999873
Q ss_pred ---------CeEEEEcCCCC
Q 024185 242 ---------SVLSFWIPNPS 252 (271)
Q Consensus 242 ---------~~v~iw~~~~~ 252 (271)
..|.+||....
T Consensus 366 g~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 366 GQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred CCchhhhhhhhhhhhccccc
Confidence 22666776553
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=116.14 Aligned_cols=186 Identities=15% Similarity=0.153 Sum_probs=148.4
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCc----c--eEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccc
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGR----P--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE 138 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~--~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 138 (271)
++.+..+..+.+||...+.....+...+. . .+.++++.-++++|+.-+.|.+|+...... ...+.+|.+.
T Consensus 102 i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~----p~~l~GHeG~ 177 (967)
T KOG0974|consen 102 IALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK----PIRLKGHEGS 177 (967)
T ss_pred EEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC----cceecccCCc
Confidence 55677788888898887776666655532 1 145577778999999999999999985443 2367899999
Q ss_pred eEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEE-EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEE
Q 024185 139 VCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC-GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC 217 (271)
Q Consensus 139 v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 217 (271)
+.++.|+.||.++++.|+|.++++|++.+.+... ..-+|.. .+..++|.|+ .+++++.|-+.++|+. +++.+..
T Consensus 178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa--Rvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~ 252 (967)
T KOG0974|consen 178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA--RVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEV 252 (967)
T ss_pred eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc--eeEEEEeccc--eeEEeccceEEEEEec-ccceehh
Confidence 9999999999999999999999999999988766 3334544 4899999998 8999999999999975 4666667
Q ss_pred ecCCcc-eeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 218 WNGNIG-VVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 218 ~~~~~~-~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+.+|.. .|..++..++....++++ +.+++|++.........+
T Consensus 253 y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~~~ 297 (967)
T KOG0974|consen 253 YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGHVE 297 (967)
T ss_pred hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccccccee
Confidence 777754 689999999888888887 889999998765554433
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.6e-12 Score=103.54 Aligned_cols=194 Identities=13% Similarity=0.087 Sum_probs=127.8
Q ss_pred eEEeeEEecCCchhhhhhhhhhc-cCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEEe-c--CCeEEEEeCCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLT-TALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVAM-E--AGAIKLFDSRS 121 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~-~--d~~i~i~d~~~ 121 (271)
......|+|+|+.+++ +.+-. .+..|+++|+.+++........+ .....|+|||+.++... . +..|+++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~--y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFY--YTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEE--EEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 5667999999985322 11222 35679999998888766555444 33478999998777553 2 35788889877
Q ss_pred CCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC---CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEe
Q 024185 122 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 198 (271)
Q Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 198 (271)
++. ..+..+........|+|||+.|+..+.. ..|.+.|+.+++..+... ... ....|+|||++++..
T Consensus 267 g~~-----~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~----~~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 267 KTL-----TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK----NNSSVSTYKNYIVYS 336 (419)
T ss_pred CcE-----EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC----cCceECCCCCEEEEE
Confidence 663 2233333334456899999988877642 268888988777644322 111 125899999998866
Q ss_pred cCC---------CcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-----CeEEEEcCCCCCC
Q 024185 199 SGD---------GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSN 254 (271)
Q Consensus 199 ~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~v~iw~~~~~~~ 254 (271)
+.. ..|.+.|+.+++.. .+... .......|+|||+.++..+ ..+.+.+++....
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~ 404 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKS 404 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCee
Confidence 543 36888898877653 34332 2334689999999877654 3377888876543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-12 Score=103.12 Aligned_cols=111 Identities=19% Similarity=0.453 Sum_probs=87.4
Q ss_pred cceEEEEEcCCCcEEEEE--ecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC---CcEEEEEcCC
Q 024185 137 AEVCDIKFSNDGKSMLLT--TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD---GTLHAWNINT 211 (271)
Q Consensus 137 ~~v~~~~~s~~~~~l~~~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~ 211 (271)
++|.++.|+|+++.+++. -.-..+.+||++ +.++..+. .++ =.++-|+|.|++++.++-+ |.+-+||+.+
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egp--RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGP--RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCC--ccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 789999999999877654 457789999976 55555553 332 4458999999999877654 8999999999
Q ss_pred ceeEEEecCCcceeEEEEEecCCcEEEEeC--------CeEEEEcCCCCCC
Q 024185 212 RNEVACWNGNIGVVACLKWAPRRAMFVAAS--------SVLSFWIPNPSSN 254 (271)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--------~~v~iw~~~~~~~ 254 (271)
.+++..+..... +-++|+|||++++++. +.++||+.....+
T Consensus 346 ~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 346 RKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred hhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 998888876554 5689999999999885 5699999876543
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-14 Score=107.88 Aligned_cols=188 Identities=14% Similarity=0.145 Sum_probs=129.0
Q ss_pred eeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec-CCcceEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcc
Q 024185 50 GLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL-RGRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPF 127 (271)
Q Consensus 50 ~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~ 127 (271)
-+.|||+|++ +|+.+.- .+.|-|.++-+..+.+.. ..+..+.|..|..+++.+ ..++.|.+|++...+.
T Consensus 13 ~c~fSp~g~y-----iAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew--- 83 (447)
T KOG4497|consen 13 FCSFSPCGNY-----IASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW--- 83 (447)
T ss_pred ceeECCCCCe-----eeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeeccee---
Confidence 4789999999 6666655 777888887765555433 245568999988766655 6788999999998876
Q ss_pred eEEEecCCccceEEEEEcCCCcEEEEE-ecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC-----
Q 024185 128 DTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD----- 201 (271)
Q Consensus 128 ~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 201 (271)
...+.....++.++.|||||+.++.. ..+-+|.+|.+.+.+.... .-.... +..++|+|||++.+..+.-
T Consensus 84 -~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~--~kg~~f~~dg~f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 84 -YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTN--VKGYAFHPDGQFCAILSRRDCKDY 159 (447)
T ss_pred -EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccC--ceeEEECCCCceeeeeecccHHHH
Confidence 56666777899999999999766654 5589999999988775443 222222 5779999999998765431
Q ss_pred -------------------------------CcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEc
Q 024185 202 -------------------------------GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 248 (271)
Q Consensus 202 -------------------------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~ 248 (271)
..+.+||---.-.+..+. ..-.+..++|+|-+++|+.|+ +.+|+-+
T Consensus 160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhc
Confidence 223444422111112221 123577788888888888887 5566655
Q ss_pred CCC
Q 024185 249 PNP 251 (271)
Q Consensus 249 ~~~ 251 (271)
--+
T Consensus 239 h~t 241 (447)
T KOG4497|consen 239 HFT 241 (447)
T ss_pred eee
Confidence 433
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.2e-12 Score=105.65 Aligned_cols=173 Identities=14% Similarity=0.049 Sum_probs=114.4
Q ss_pred eEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEEecC---CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC
Q 024185 73 EYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 148 (271)
.|.++|.+.+.......... +...+|+|||+.|+..+.+ ..|++||+.+++. ..+....+......|+|||
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-----~~l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-----EQITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-----EEccCCCCCcCCeEECCCC
Confidence 46667776554433333332 3558999999998876543 3699999988763 2222333445678999999
Q ss_pred cEEEEE-ecCC--eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CC--cEEEEEcCCceeEEEecCCc
Q 024185 149 KSMLLT-TTNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGNI 222 (271)
Q Consensus 149 ~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~ 222 (271)
+.|+.. +.++ .|++||+.+++... +..+.. ......|+|||+.++..+. +| .|+++|+.+++...... ..
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~--~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~ 330 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPA--IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VG 330 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEE-cccCCC--CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CC
Confidence 988754 4444 68889998876543 333332 2556899999998876654 33 57778887776533221 12
Q ss_pred ceeEEEEEecCCcEEEEeC---C--eEEEEcCCCCCC
Q 024185 223 GVVACLKWAPRRAMFVAAS---S--VLSFWIPNPSSN 254 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~~~---~--~v~iw~~~~~~~ 254 (271)
.......|+|||+.++..+ + .|.+||+.+++.
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 2234678999999888765 2 488899987654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.7e-12 Score=103.48 Aligned_cols=173 Identities=17% Similarity=0.091 Sum_probs=110.9
Q ss_pred eEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecC---CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC
Q 024185 73 EYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 148 (271)
.+.++|.+.......+... .+....|+|||++|+..+.+ ..|++||+.+++. ..+....+.....+|+|||
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-----~~lt~~~g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-----EKVTSFPGINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-----EEecCCCCCcCCeeECCCC
Confidence 5666676554433333333 34558999999998877543 3688999987763 1122222334578999999
Q ss_pred cEEEEE-ecCC--eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CC--cEEEEEcCCceeEEEecCCc
Q 024185 149 KSMLLT-TTNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGNI 222 (271)
Q Consensus 149 ~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~ 222 (271)
+.|+.. +.++ .|+++|+.+++... +..+.. .....+|+|||++++..+. ++ .|+++|+.+++... +....
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~--~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g 349 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTR-ITRHRA--IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEG 349 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEE-CccCCC--CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCC
Confidence 988754 5555 48888988776533 333322 2566899999998876654 33 57777887776543 22122
Q ss_pred ceeEEEEEecCCcEEEEeC---C--eEEEEcCCCCCC
Q 024185 223 GVVACLKWAPRRAMFVAAS---S--VLSFWIPNPSSN 254 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~~~---~--~v~iw~~~~~~~ 254 (271)
......+|+|||++|+..+ + .|.++|+.+++.
T Consensus 350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 2234678999999887764 3 466678877654
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=110.20 Aligned_cols=161 Identities=18% Similarity=0.309 Sum_probs=120.5
Q ss_pred eEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC--CCcEEEEEecCCeE
Q 024185 85 QGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLTTTNNNI 160 (271)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i 160 (271)
.+.+.+|. +++++|+.+|.+|++|++|-.+.|||.-..++ +... -.+|...|.+++|-| +.+.+++|..|..|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--lhsI-~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--LHSI-STGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce--eeee-ecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 44567775 67899999999999999999999999986654 3333 358999999999999 56778899999999
Q ss_pred EEEECCCC----------eEEEEeecCCCCCceeeEEECCCC-CEEEEecCCCcEEEEEcCCceeEE-------E---ec
Q 024185 161 YVLDAYGG----------EKRCGFSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRNEVA-------C---WN 219 (271)
Q Consensus 161 ~~~d~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~-------~---~~ 219 (271)
+++|+... +..+.+..|... |..++-.|++ +.+-++++||+|+-+|++....-. . +.
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~r--VKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDR--VKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhh--hhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 99999742 223344555554 7788999998 678899999999999998632211 1 11
Q ss_pred CCcceeEEEEEecCCc-EEEEeCC--eEEEEcCC
Q 024185 220 GNIGVVACLKWAPRRA-MFVAASS--VLSFWIPN 250 (271)
Q Consensus 220 ~~~~~v~~~~~s~~~~-~l~~~~~--~v~iw~~~ 250 (271)
..--...++..+|... +|+.|+. -.++||.+
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 1123457889999655 6666663 38999953
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.7e-12 Score=102.72 Aligned_cols=177 Identities=15% Similarity=0.105 Sum_probs=109.6
Q ss_pred ceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEE---EEecC--CeEEEEeCCCCCCCcceEEEecCCccceEEEEEc
Q 024185 72 LEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFA---VAMEA--GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS 145 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~---~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 145 (271)
..|.+.|.+.+.......... .....|+|||+.++ +...+ ..|++.++.+++. ..+....+.....+||
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-----~~lt~~~g~~~~p~wS 239 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-----KKILALQGNQLMPTFS 239 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-----eEeecCCCCccceEEC
Confidence 456677776555443333322 34489999997532 33333 3688889887764 2222233455678999
Q ss_pred CCCcEEEEEec-----CCeEEEEECCCC---eEEEEeecCCCCCceeeEEECCCCCEEEEec-CCCcEEEE--EcCC-ce
Q 024185 146 NDGKSMLLTTT-----NNNIYVLDAYGG---EKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAW--NINT-RN 213 (271)
Q Consensus 146 ~~~~~l~~~~~-----d~~i~~~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw--d~~~-~~ 213 (271)
|||+.|+..+. +..+..|++..+ +..+....... .....+|+|||+.|+..+ .+|...+| ++.. +.
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~--~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFG--TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCC--CcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 99999887653 223444777653 32222222211 245689999999888665 35654555 4432 33
Q ss_pred eEEEecCCcceeEEEEEecCCcEEEEeC-----CeEEEEcCCCCCCC
Q 024185 214 EVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNS 255 (271)
Q Consensus 214 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~v~iw~~~~~~~~ 255 (271)
....+..+...+....|||||+.|+..+ ..|.+||+.+++..
T Consensus 318 ~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 318 SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 3444544455677899999999888764 35999999887654
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-10 Score=90.58 Aligned_cols=202 Identities=15% Similarity=0.194 Sum_probs=130.4
Q ss_pred ceEEeeEEecCCchhhhhhhhhhc-cCceEEEEEecCc--c--eeEEEe-cCCcce-EEEcCCCCEEEEEe-cCCeEEEE
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLT-TALEYGIFVLMLA--S--FQGILR-LRGRPT-VAFDQQGLVFAVAM-EAGAIKLF 117 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~-~dg~i~iwd~~~~--~--~~~~~~-~~~~~~-~~~~~~~~~l~~~~-~d~~i~i~ 117 (271)
.....++++|+++.+++ .-..+ .++.|..|.+... + .+.... ....+| ++++|++++|+++. .+|.+.++
T Consensus 37 ~~Ps~l~~~~~~~~LY~--~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYV--VNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSECCEEE-TTSSEEEE--EETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCceEEEEeCCCEEEE--EEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 34455889999998544 11111 5789999998764 3 233333 223344 99999999999986 47899999
Q ss_pred eCCCCC-CCcc-eEEEec--------CCccceEEEEEcCCCcEEEEEec-CCeEEEEECCCCe--E--EEEeecCCCCCc
Q 024185 118 DSRSYD-KGPF-DTFLVG--------GDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGE--K--RCGFSLEPSPNT 182 (271)
Q Consensus 118 d~~~~~-~~~~-~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~--~--~~~~~~~~~~~~ 182 (271)
++.... .... ...... .......++.++|+++++++... ...|.+|++.... . ...+..... ..
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G-~G 193 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG-SG 193 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT-SS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC-CC
Confidence 998743 2111 011110 12245789999999999888754 4589999997654 3 223333322 34
Q ss_pred eeeEEECCCCCEEEEecC-CCcEEEEEcC--Cce--eEEEecCC------cceeEEEEEecCCcEEEEeC---CeEEEEc
Q 024185 183 NTEATFTPDGQYVVSGSG-DGTLHAWNIN--TRN--EVACWNGN------IGVVACLKWAPRRAMFVAAS---SVLSFWI 248 (271)
Q Consensus 183 v~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~--~~~~~~~~------~~~v~~~~~s~~~~~l~~~~---~~v~iw~ 248 (271)
.+.+.|+|++++++...+ ++.|.++++. +++ .++.+... ......+.++|||++|.++. +.|.+|+
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 788999999999877765 7889999988 443 23333211 12467899999999988875 6799999
Q ss_pred CC
Q 024185 249 PN 250 (271)
Q Consensus 249 ~~ 250 (271)
++
T Consensus 274 ~d 275 (345)
T PF10282_consen 274 LD 275 (345)
T ss_dssp EC
T ss_pred Ee
Confidence 84
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=104.67 Aligned_cols=185 Identities=15% Similarity=0.171 Sum_probs=146.4
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR- 91 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 91 (271)
.|+++.++..++.++...| ..+..|....+.++++..++...+ ++.|+.+|.|..||.+....+.++...
T Consensus 147 Dly~~gsg~evYRlNLEqG----rfL~P~~~~~~~lN~v~in~~hgL-----la~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 147 DLYLVGSGSEVYRLNLEQG----RFLNPFETDSGELNVVSINEEHGL-----LACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred cEEEeecCcceEEEEcccc----ccccccccccccceeeeecCccce-----EEecccCceEEEecchhhhhheeeeccc
Confidence 4667777889999998888 777778888899999999999888 888999999999999988776666321
Q ss_pred ------------CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC--CcEEEEEecC
Q 024185 92 ------------GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTN 157 (271)
Q Consensus 92 ------------~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d 157 (271)
.+++++|+.+|-.+++|+.+|.+.|||++..+. +... -.+..-+|..+.|.+. ++.+++ ...
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~k-dh~~e~pi~~l~~~~~~~q~~v~S-~Dk 293 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVK-DHGYELPIKKLDWQDTDQQNKVVS-MDK 293 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeec-ccCCccceeeecccccCCCceEEe-cch
Confidence 256799999999999999999999999998774 2221 2233467889999875 344444 345
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCce
Q 024185 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 213 (271)
Q Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 213 (271)
..++|||-.+|+....+..... +..+|+-|++-+++++.+++.+..|-+....
T Consensus 294 ~~~kiWd~~~Gk~~asiEpt~~---lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 294 RILKIWDECTGKPMASIEPTSD---LNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred HHhhhcccccCCceeeccccCC---cCceeeecCCceEEEecCCCcceeEEccccC
Confidence 6799999999998777654333 7889999999999999999988888776533
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-12 Score=103.18 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=132.9
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCC-ccceEEEEEc------C--------------CCcEEEEEecCC
Q 024185 100 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFS------N--------------DGKSMLLTTTNN 158 (271)
Q Consensus 100 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~s------~--------------~~~~l~~~~~d~ 158 (271)
|...++|....||.+++||...++. .+.+....| .+...+..|. | |-..++-|...|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~--~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQL--QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred chhheEeecCCCCeEEEEEccCcee--eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 4567899999999999999998775 222222222 2334444442 1 223577788899
Q ss_pred eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEE
Q 024185 159 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFV 238 (271)
Q Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 238 (271)
.|.+|+...++....+....+.+.|.++.++.+-..+.+++.|+.+..|+..+.+.+..+......+.+++.+|||..++
T Consensus 81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 99999999999999988777777799999999888999999999999999999999999988888899999999999999
Q ss_pred EeCCeEEEEcCCCCCCCcCCCC--CCcccc
Q 024185 239 AASSVLSFWIPNPSSNSTDEST--DPQATV 266 (271)
Q Consensus 239 ~~~~~v~iw~~~~~~~~~~~~~--~~~~~~ 266 (271)
++++.|++||+++++....+.. .|.+.+
T Consensus 161 ~as~~ik~~~~~~kevv~~ftgh~s~v~t~ 190 (541)
T KOG4547|consen 161 TASRQIKVLDIETKEVVITFTGHGSPVRTL 190 (541)
T ss_pred eccceEEEEEccCceEEEEecCCCcceEEE
Confidence 9999999999999998877763 344443
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-13 Score=120.98 Aligned_cols=192 Identities=15% Similarity=0.163 Sum_probs=151.9
Q ss_pred ccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC---cceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 42 ATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG---RPTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 42 ~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
.++-..+.++.-+|...+ .++|+.||.+++|....++.+..++..+ +..+.|+.+|+.+.++..||.+.+|.
T Consensus 2205 k~~v~~v~r~~sHp~~~~-----Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPY-----YLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred ecccCceeeecCCCCCce-----EEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecc
Confidence 344456666777787777 7899999999999999998888876543 44589999999999999999999999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe---cCCeEEEEECCCC---eEEEEeecCCCCCceeeEEECCCC
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT---TNNNIYVLDAYGG---EKRCGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~~~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~~ 192 (271)
.. .+ .....+.|.....++.|-. ..+++++ .++.+.+||.--. ..++ ..|.+. ++++++.|..
T Consensus 2280 ~~-pk----~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~g--aT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2280 AS-PK----PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGG--ATVLAYAPKH 2348 (2439)
T ss_pred cC-Cc----ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCC--ceEEEEcCcc
Confidence 87 22 2556678888889998886 5566664 3788999996422 2233 566665 8889999999
Q ss_pred CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 193 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+.+++|+.+|.|++||++..+.++.++. +. ...++++++ |.++||++....++....
T Consensus 2349 qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred eEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999999999999998888877764 44 567888887 999999998876665543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-10 Score=88.27 Aligned_cols=205 Identities=14% Similarity=0.175 Sum_probs=139.1
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC--cceeEE----EecCCcceEEEcCCCCEEEEEec-CCeEE
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML--ASFQGI----LRLRGRPTVAFDQQGLVFAVAME-AGAIK 115 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~-d~~i~ 115 (271)
...+..+-++++|+++.+++ +.--+.+|.|.-|.++. |+.... +.++....+++++++++++++.. .|.|.
T Consensus 37 ~~~~nptyl~~~~~~~~LY~--v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYV--VNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred cccCCCceEEECCCCCEEEE--EEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 34455666999999988555 34445578888888764 443211 12233344999999999998854 47999
Q ss_pred EEeCCCC-CCCcceEEEecCCccc----------eEEEEEcCCCcEEEEEec-CCeEEEEECCCCeEEEEeecC-CCCCc
Q 024185 116 LFDSRSY-DKGPFDTFLVGGDTAE----------VCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLE-PSPNT 182 (271)
Q Consensus 116 i~d~~~~-~~~~~~~~~~~~~~~~----------v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~-~~~~~ 182 (271)
++.++.. .. ........|.+. +....+.|++++|++..- -.+|.+|++..|+....-... .....
T Consensus 115 v~p~~~dG~l--~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~G 192 (346)
T COG2706 115 VYPLQADGSL--QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAG 192 (346)
T ss_pred EEEcccCCcc--ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCC
Confidence 9999663 33 222223345544 889999999999988754 347999999987654332111 11134
Q ss_pred eeeEEECCCCCEEEEecC-CCcEEEEEcCCc-eeEEEecC---------CcceeEEEEEecCCcEEEEeC---CeEEEEc
Q 024185 183 NTEATFTPDGQYVVSGSG-DGTLHAWNINTR-NEVACWNG---------NIGVVACLKWAPRRAMFVAAS---SVLSFWI 248 (271)
Q Consensus 183 v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~---~~v~iw~ 248 (271)
.+.+.|+|++++....++ +++|.+|..... ..+..++. ...+...+..+|||++|.++. ..|-+|.
T Consensus 193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 677999999999988877 889999998763 22222211 123567889999999999987 5577776
Q ss_pred CCC
Q 024185 249 PNP 251 (271)
Q Consensus 249 ~~~ 251 (271)
+..
T Consensus 273 V~~ 275 (346)
T COG2706 273 VDP 275 (346)
T ss_pred EcC
Confidence 643
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.8e-12 Score=95.01 Aligned_cols=202 Identities=14% Similarity=0.145 Sum_probs=139.0
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-----eeEEEecCC--------------cceEEEcCCCC-
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-----FQGILRLRG--------------RPTVAFDQQGL- 103 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~--------------~~~~~~~~~~~- 103 (271)
....+.++.|...|.+ |++|..+|.|.++.-+... ....++.|. +..+.|.++++
T Consensus 24 eadiis~vef~~~Ge~-----LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 24 EADIISAVEFDHYGER-----LATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred hhcceeeEEeecccce-----EeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 3457888999999999 9999999999999654322 223334442 44588888764
Q ss_pred -EEEEEecCCeEEEEeCCCCCCCc----------------ceEE----------------EecCCccceEEEEEcCCCcE
Q 024185 104 -VFAVAMEAGAIKLFDSRSYDKGP----------------FDTF----------------LVGGDTAEVCDIKFSNDGKS 150 (271)
Q Consensus 104 -~l~~~~~d~~i~i~d~~~~~~~~----------------~~~~----------------~~~~~~~~v~~~~~s~~~~~ 150 (271)
.+...+.|.+|++|.+.....+. ++.. --.+|.--|.++.++.|+..
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 66777789999999986543211 0000 01246677899999999998
Q ss_pred EEEEecCCeEEEEECCCCeEEE-EeecCCCC-----CceeeEEECCC-CCEEEEecCCCcEEEEEcCCcee------EEE
Q 024185 151 MLLTTTNNNIYVLDAYGGEKRC-GFSLEPSP-----NTNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNE------VAC 217 (271)
Q Consensus 151 l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~------~~~ 217 (271)
++++. |-.|-+|+++--..-. ........ .-|++..|+|. .+.++..+..|+|++.|++.... +..
T Consensus 179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 87754 7789999986432211 11111111 24777889996 56777888899999999985322 111
Q ss_pred e----------cCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCC
Q 024185 218 W----------NGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP 251 (271)
Q Consensus 218 ~----------~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~ 251 (271)
. ..--..|..+.|+++|+++++-+ -+|++||++.
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nm 302 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNM 302 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccc
Confidence 1 11124688999999999999999 9999999854
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.3e-12 Score=109.05 Aligned_cols=182 Identities=13% Similarity=0.162 Sum_probs=127.2
Q ss_pred EEecCcceeEEEecCCcc--eEEEcC-CCCEEEEEecCCeEEEEeCCCCCCC---cceEEEecCCccceEEEEEcCCCcE
Q 024185 77 FVLMLASFQGILRLRGRP--TVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKG---PFDTFLVGGDTAEVCDIKFSNDGKS 150 (271)
Q Consensus 77 wd~~~~~~~~~~~~~~~~--~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~ 150 (271)
|+. .|..+..+..|... -++.++ ++.++++|+.||+|++|+.+.-... .....++......+.++.+.+.+..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 444 46667777776533 355555 5599999999999999998753321 1112233334578999999999999
Q ss_pred EEEEecCCeEEEEECCCC-------eEEEEeecCCCCCceeeEEECC-CCC-EEEEecCCCcEEEEEcCCceeEEEec--
Q 024185 151 MLLTTTNNNIYVLDAYGG-------EKRCGFSLEPSPNTNTEATFTP-DGQ-YVVSGSGDGTLHAWNINTRNEVACWN-- 219 (271)
Q Consensus 151 l~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~~~v~~~~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-- 219 (271)
+|.++.||.|++.++... .+.+..+.+..+..+..-+|.. .+. .++.+...+.|..||++......+++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998652 1222222233322233333332 233 67888888999999998876655443
Q ss_pred CCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 220 GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 220 ~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
...+.|++++.+|.+.+++.|. |.+.+||++-+.+...-+
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc
Confidence 2346799999999999999997 999999999887766554
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.3e-12 Score=95.84 Aligned_cols=217 Identities=13% Similarity=0.105 Sum_probs=159.0
Q ss_pred eeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEe-cCcceeEEE---ecCCcceEEEcCCCCEEEEE
Q 024185 33 YQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVL-MLASFQGIL---RLRGRPTVAFDQQGLVFAVA 108 (271)
Q Consensus 33 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~ 108 (271)
.++..++.++++.+.++....-|.... +++.+.|.++++|-- +.++.-..+ ......++++.++...|++|
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~g-----v~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg 86 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEG-----VISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVG 86 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCC-----eEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEE
Confidence 345666778999999998888888887 889999999999943 444432222 23345679999999999999
Q ss_pred ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC----------------------
Q 024185 109 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY---------------------- 166 (271)
Q Consensus 109 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~---------------------- 166 (271)
-.+|++.-+.+...-.+.........|...+..+-|+-..+++++.+.|..+.---.+
T Consensus 87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~ 166 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL 166 (404)
T ss_pred EecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE
Confidence 9999999887764332222344455788888888888877777777766433211111
Q ss_pred -------------------CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee-EEEecCCcceeE
Q 024185 167 -------------------GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE-VACWNGNIGVVA 226 (271)
Q Consensus 167 -------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~ 226 (271)
.-..+.++.+|... +.+++|.|....+++|..|..+.+||+.-++- ...+.+|...|.
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~--~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE--VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ 244 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCcccc--eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence 11233444455544 89999999999999999999999999975443 456788999999
Q ss_pred EEEEecCCcEEEEeC--CeEEEEcCCCCCCCc
Q 024185 227 CLKWAPRRAMFVAAS--SVLSFWIPNPSSNST 256 (271)
Q Consensus 227 ~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~ 256 (271)
.+...+.-+.+.+++ |.|.+|+++..+.+.
T Consensus 245 ~l~~~~~t~~l~S~~edg~i~~w~mn~~r~et 276 (404)
T KOG1409|consen 245 ALSYAQHTRQLISCGEDGGIVVWNMNVKRVET 276 (404)
T ss_pred hhhhhhhheeeeeccCCCeEEEEeccceeecC
Confidence 998888888888887 889999998766543
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.7e-11 Score=86.88 Aligned_cols=187 Identities=10% Similarity=0.038 Sum_probs=127.5
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcceEEEc----CCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFD----QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 140 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 140 (271)
|+.|+..|...+|...+.+....+-....+.+.+. -....+..++.|.++++.+++.+.. .+.+....-.+.
T Consensus 87 la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~----~~~~h~~~~~~n 162 (344)
T KOG4532|consen 87 LADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN----KFAVHNQNLTQN 162 (344)
T ss_pred EEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc----cceeecccccee
Confidence 78899999999999986654333322211211111 1223467788899999999877654 222211112378
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEECCCC-eE-EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE--
Q 024185 141 DIKFSNDGKSMLLTTTNNNIYVLDAYGG-EK-RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA-- 216 (271)
Q Consensus 141 ~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-- 216 (271)
+++++||++++++.+....|..|.+... +. +........ ..-.+..|+.....+|++..||++.|||++......
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~-D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS-DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC-CCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 8999999999999999999999988643 22 232222222 224558899999999999999999999998754332
Q ss_pred ---EecCCcceeEEEEEecCCc--EE-EEeC-CeEEEEcCCCCCCCc
Q 024185 217 ---CWNGNIGVVACLKWAPRRA--MF-VAAS-SVLSFWIPNPSSNST 256 (271)
Q Consensus 217 ---~~~~~~~~v~~~~~s~~~~--~l-~~~~-~~v~iw~~~~~~~~~ 256 (271)
+-+.|.+.+..+.|+|.|. +| ++-. +.+.+-|+++.+...
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 2356889999999998664 33 4434 789999998876443
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-12 Score=105.07 Aligned_cols=214 Identities=12% Similarity=0.146 Sum_probs=145.0
Q ss_pred EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC-------cceeEEEecCC--cceEEEcCCCCEEE
Q 024185 36 MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML-------ASFQGILRLRG--RPTVAFDQQGLVFA 106 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~--~~~~~~~~~~~~l~ 106 (271)
.++..|.+|...+..++.-.+.+. +++++.|+++++|.++. ..+..+++.|. +..+.|-.+.++++
T Consensus 726 irL~nf~GH~~~iRai~AidNENS-----FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ 800 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENS-----FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA 800 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccc-----eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee
Confidence 466778899998888877777776 88999999999998863 23566677775 45588888888777
Q ss_pred EEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC--CCcEEEEE-ecCCeEEEEECCCCeEEEEeecCC--CC-
Q 024185 107 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEP--SP- 180 (271)
Q Consensus 107 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~--~~- 180 (271)
++ ||.|++||.--+.. +....-....+.+..+..-| +...++++ +...+++++|.+.++-...++... .+
T Consensus 801 Sc--D~giHlWDPFigr~--Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 801 SC--DGGIHLWDPFIGRL--LAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred ec--cCcceeecccccch--hHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 65 78999999866553 21111112223344444444 34444444 678999999999887665554432 22
Q ss_pred CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEE-EcCCCCCCCcC
Q 024185 181 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSF-WIPNPSSNSTD 257 (271)
Q Consensus 181 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~i-w~~~~~~~~~~ 257 (271)
..+.+++..|.|++++.+-.+|.|.+.|.++|+.+..++.-......++ .|....|+... .++.+ |..-.+....+
T Consensus 877 a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred hheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeec
Confidence 4578899999999999999999999999999999887764443333333 33344444433 45656 76655554444
Q ss_pred CC
Q 024185 258 ES 259 (271)
Q Consensus 258 ~~ 259 (271)
..
T Consensus 956 ~k 957 (1034)
T KOG4190|consen 956 DK 957 (1034)
T ss_pred cC
Confidence 43
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-10 Score=87.35 Aligned_cols=238 Identities=13% Similarity=0.140 Sum_probs=157.3
Q ss_pred ceeEEeeecceeeEEEEeeccce-eeEEEEEcccccc------------eEEeeEEecCCchhhhhhhhhhccCceEEEE
Q 024185 11 TQALLFARQNIILILLESLCGIY-QCMIIEFFATSKG------------IRRGLFLSACLQLMIALCLVLLTTALEYGIF 77 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iw 77 (271)
.+.|..|..+|.+..+....... .......++.|+. .++.+.|.+++.... ++..+.|.+|++|
T Consensus 37 Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~---FLlstNdktiKlW 113 (433)
T KOG1354|consen 37 GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE---FLLSTNDKTIKLW 113 (433)
T ss_pred cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccE---EEEecCCcceeee
Confidence 35677777788888877554321 2223344544443 466788888776421 5577889999999
Q ss_pred EecCcceeE---------------EE---------------------ecCC--cceEEEcCCCCEEEEEecCCeEEEEeC
Q 024185 78 VLMLASFQG---------------IL---------------------RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDS 119 (271)
Q Consensus 78 d~~~~~~~~---------------~~---------------------~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~ 119 (271)
-+....... .+ ..|. +++++++.|+..++++. |=.|.+|++
T Consensus 114 Ki~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnl 192 (433)
T KOG1354|consen 114 KIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNL 192 (433)
T ss_pred eeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ceeeeeccc
Confidence 774321100 00 1121 45588888888887775 778999998
Q ss_pred CCCCCCcceEEEecCCc-----cceEEEEEcCC-CcEEEEEecCCeEEEEECCCCeEE----EEeecCCCC---------
Q 024185 120 RSYDKGPFDTFLVGGDT-----AEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKR----CGFSLEPSP--------- 180 (271)
Q Consensus 120 ~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~----~~~~~~~~~--------- 180 (271)
+-... .+....++.+. .-|++..|+|. -+.++..+..|+|++.|++..... ..+.....+
T Consensus 193 ei~d~-sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffsei 271 (433)
T KOG1354|consen 193 EIIDQ-SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEI 271 (433)
T ss_pred cccCC-ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHH
Confidence 75432 23444444443 35888899994 567788888999999999853221 112111111
Q ss_pred -CceeeEEECCCCCEEEEecCCCcEEEEEc-CCceeEEEecCCc------------ce---eEEEEEecCCcEEEEeC--
Q 024185 181 -NTNTEATFTPDGQYVVSGSGDGTLHAWNI-NTRNEVACWNGNI------------GV---VACLKWAPRRAMFVAAS-- 241 (271)
Q Consensus 181 -~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~------------~~---v~~~~~s~~~~~l~~~~-- 241 (271)
..|..+.|+++|+|+++-..- +|++||+ ...+++.+++-|. .. -..++|+.++.++++|+
T Consensus 272 IsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~ 350 (433)
T KOG1354|consen 272 ISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYN 350 (433)
T ss_pred hhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccccc
Confidence 357889999999999987654 8999999 4567777766553 11 24688999999999999
Q ss_pred CeEEEEcCCCCCC
Q 024185 242 SVLSFWIPNPSSN 254 (271)
Q Consensus 242 ~~v~iw~~~~~~~ 254 (271)
+.+++|+...+..
T Consensus 351 n~frvf~~~~gsk 363 (433)
T KOG1354|consen 351 NVFRVFNLARGSK 363 (433)
T ss_pred ceEEEecCCCCcc
Confidence 6799999766543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-10 Score=90.06 Aligned_cols=186 Identities=15% Similarity=0.168 Sum_probs=138.0
Q ss_pred ecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec---C---C-----cce--EE-EcC-CCCEEEEEecCCeEEEEe
Q 024185 54 SACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL---R---G-----RPT--VA-FDQ-QGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 54 s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~---~-----~~~--~~-~~~-~~~~l~~~~~d~~i~i~d 118 (271)
+.||+.++. +..|.|.+||.++....+.--+ . . .+. +. |++ +|.+++..+ -|...+.+
T Consensus 275 nsDGkrIvF------q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~ 347 (668)
T COG4946 275 NSDGKRIVF------QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMR 347 (668)
T ss_pred CCCCcEEEE------ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEEC
Confidence 456665433 5667899999987654322111 1 0 011 21 333 678888888 46777877
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC-eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEE
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
...+- ...+ +|.+.|.-..+.-+++-++.|..|| .+-++|.++++..+. ...-+ .|.++..+|+|++++.
T Consensus 348 ~~~~~-----~iqv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg--~I~av~vs~dGK~~vv 418 (668)
T COG4946 348 PWDGY-----SIQV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLG--NIEAVKVSPDGKKVVV 418 (668)
T ss_pred CCCCe-----eEEc-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCcc--ceEEEEEcCCCcEEEE
Confidence 76554 2332 5778899889998888999999998 899999998875543 33333 3999999999999999
Q ss_pred ecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC------CeEEEEcCCCCCCC
Q 024185 198 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS------SVLSFWIPNPSSNS 255 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~~v~iw~~~~~~~~ 255 (271)
+.....+.+.|+.+++....=+...+-|+...|||+++++|-+- ..|+++|+.+++..
T Consensus 419 aNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 419 ANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred EcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 99999999999999987665555667899999999999999883 56999999997754
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=98.31 Aligned_cols=207 Identities=9% Similarity=0.055 Sum_probs=152.5
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe-cCCcce--EEEcCC--CCEEEEEecCCe
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR-LRGRPT--VAFDQQ--GLVFAVAMEAGA 113 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~--~~~~~~--~~~l~~~~~d~~ 113 (271)
..+..|.+.++.+.|...|.. +++|+.|..|.+||+..++....+. +|..+. ..|-|. .+.+++++.||.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~-----l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDV-----LASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hcccCCCCccceeeecccCce-----eeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 347899999999999999998 9999999999999999988877764 454333 456663 467899999999
Q ss_pred EEEEeCCCCCCCcceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEECCCCeEEEEeecCC--CC--CceeeEEE
Q 024185 114 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP--SP--NTNTEATF 188 (271)
Q Consensus 114 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~--~~v~~~~~ 188 (271)
+++=.+..... ......+..|.++|.-++.-|+ .+.|.+++.|+.+.-+|++.+.+...+.... .+ .....++.
T Consensus 211 vr~s~i~~t~~-~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 211 VRVSEILETGY-VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred eeeeeeccccc-eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 99887654332 1235567789999999999995 4568899999999999999876544443221 11 34667888
Q ss_pred CCCCC-EEEEecCCCcEEEEEcCCcee------EEEec------CCcceeEEEEEecCC-cEEEEeC-CeEEEEcCCC
Q 024185 189 TPDGQ-YVVSGSGDGTLHAWNINTRNE------VACWN------GNIGVVACLKWAPRR-AMFVAAS-SVLSFWIPNP 251 (271)
Q Consensus 189 ~~~~~-~l~~~~~dg~i~iwd~~~~~~------~~~~~------~~~~~v~~~~~s~~~-~~l~~~~-~~v~iw~~~~ 251 (271)
+|-.. .+++++.|..+++||.+.-.. +..+. .....|++++|+.++ .+|++-+ ..|+++.-..
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 88655 788999999999999875221 22221 223468999999654 5666666 6788885433
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.1e-09 Score=95.91 Aligned_cols=199 Identities=18% Similarity=0.150 Sum_probs=130.3
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec-------------------CCcceEEEcCC-CCEEEE
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL-------------------RGRPTVAFDQQ-GLVFAV 107 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------------~~~~~~~~~~~-~~~l~~ 107 (271)
-..+++.+++..+ +++-...+.|+.+|..++. +.++.+ .....++++|+ +..+++
T Consensus 626 P~GIavd~~gn~L----YVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVa 700 (1057)
T PLN02919 626 PQGLAYNAKKNLL----YVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIA 700 (1057)
T ss_pred CcEEEEeCCCCEE----EEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEE
Confidence 3568888887653 2344556789999987654 333321 11234899995 455555
Q ss_pred EecCCeEEEEeCCCCCCCcceEEE-------ecC------CccceEEEEEcCCCcEEEEE-ecCCeEEEEECCCCeEEEE
Q 024185 108 AMEAGAIKLFDSRSYDKGPFDTFL-------VGG------DTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCG 173 (271)
Q Consensus 108 ~~~d~~i~i~d~~~~~~~~~~~~~-------~~~------~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~ 173 (271)
.+.++.|++||..++.. ..+. ..+ .......++++|+++.|+++ +.++.|++||+.++.....
T Consensus 701 d~~~~~I~v~d~~~g~v---~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~ 777 (1057)
T PLN02919 701 MAGQHQIWEYNISDGVT---RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL 777 (1057)
T ss_pred ECCCCeEEEEECCCCeE---EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE
Confidence 56788999999876542 1111 001 11235679999999865544 5578999999987653211
Q ss_pred eec-------------CCC------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec-------------CC
Q 024185 174 FSL-------------EPS------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-------------GN 221 (271)
Q Consensus 174 ~~~-------------~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~ 221 (271)
..+ ... -.....++++++|+.+++-+.++.|++||..++....... +.
T Consensus 778 ~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~ 857 (1057)
T PLN02919 778 AGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ 857 (1057)
T ss_pred EecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccc
Confidence 100 000 0124578999999988888889999999998776553321 11
Q ss_pred cceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 222 IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 222 ~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
-.....++++++|+++++.+ +.|++||+++++.
T Consensus 858 l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 858 LSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 12467899999999777665 7799999988765
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.5e-13 Score=112.89 Aligned_cols=115 Identities=13% Similarity=0.285 Sum_probs=106.2
Q ss_pred EecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC
Q 024185 131 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210 (271)
Q Consensus 131 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 210 (271)
.+.+|...|.|..|...|.++++|+.|..++||...++.++....+|... ++.++.+.+..++++++.|..|++|.+.
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~d--itdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGD--ITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccc--cchhccchhhhhhhhcccCceEEEEecC
Confidence 35679999999999999999999999999999999999999999999877 9999999999999999999999999999
Q ss_pred CceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCC
Q 024185 211 TRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPN 250 (271)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~ 250 (271)
.+.++..+.+|.+.|++++|+|-. .++. |++++||.+
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR 300 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc---cCCCCCceEecccc
Confidence 999999999999999999999965 3333 999999998
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-10 Score=89.47 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=123.1
Q ss_pred CceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCC-eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc
Q 024185 71 ALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAG-AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK 149 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 149 (271)
.|...+.+...+..++.-+..++....+..+++-++.|..|| .+-+||.++++ .......-+.|.+++.+|+|+
T Consensus 340 RGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-----~kr~e~~lg~I~av~vs~dGK 414 (668)
T COG4946 340 RGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-----VKRIEKDLGNIEAVKVSPDGK 414 (668)
T ss_pred cCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-----EEEeeCCccceEEEEEcCCCc
Confidence 455666666555554444444566667777777899999998 89999999887 344555678899999999999
Q ss_pred EEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC----cEEEEEcCCceeEEEecCCccee
Q 024185 150 SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG----TLHAWNINTRNEVACWNGNIGVV 225 (271)
Q Consensus 150 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v 225 (271)
+++++.....+.+.|+.+++....-+... +-|+.+.|+|+++++|.+--+| .|+++|+..++....-. ..+.-
T Consensus 415 ~~vvaNdr~el~vididngnv~~idkS~~--~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~D 491 (668)
T COG4946 415 KVVVANDRFELWVIDIDNGNVRLIDKSEY--GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYD 491 (668)
T ss_pred EEEEEcCceEEEEEEecCCCeeEeccccc--ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccccc
Confidence 99999999999999999998644333223 4599999999999999887665 69999998877755443 33334
Q ss_pred EEEEEecCCcEEEEeC
Q 024185 226 ACLKWAPRRAMFVAAS 241 (271)
Q Consensus 226 ~~~~~s~~~~~l~~~~ 241 (271)
.+.+|.||+++|.--+
T Consensus 492 fsPaFD~d~ryLYfLs 507 (668)
T COG4946 492 FSPAFDPDGRYLYFLS 507 (668)
T ss_pred cCcccCCCCcEEEEEe
Confidence 6788999999776543
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7e-12 Score=95.33 Aligned_cols=165 Identities=8% Similarity=0.029 Sum_probs=125.4
Q ss_pred hhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC
Q 024185 67 LLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN 146 (271)
Q Consensus 67 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 146 (271)
+.+.+-.+-+-|.++|....-.....+.++.|...++.+..|..+|.|..+|++.+..+.......--|...|+++..-.
T Consensus 229 s~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq 308 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQ 308 (425)
T ss_pred cccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhc
Confidence 55667778888888876443333345777889888999999999999999999876321111222224889999998777
Q ss_pred -CCcEEEEEecCCeEEEEECCCCeE---EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc
Q 024185 147 -DGKSMLLTTTNNNIYVLDAYGGEK---RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI 222 (271)
Q Consensus 147 -~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 222 (271)
++++|.+.+.+|+|++||++--++ ++++.+|.+...-.-+...+....++++++|-..+||.++.+..+.+++-..
T Consensus 309 ~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 309 FSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred cccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 788999999999999999987766 8889988776444456677888899999999999999999999998875332
Q ss_pred ----ceeEEEEEe
Q 024185 223 ----GVVACLKWA 231 (271)
Q Consensus 223 ----~~v~~~~~s 231 (271)
..+.+++|.
T Consensus 389 s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 389 SASEVDIPSVAFD 401 (425)
T ss_pred ccccccccceehh
Confidence 234555554
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.4e-11 Score=103.28 Aligned_cols=140 Identities=14% Similarity=0.088 Sum_probs=115.5
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcce--EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI 142 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 142 (271)
+++|+.-+.|.+|+....+.-..+.+|...+ +.++.||+++++.++|.++++|++++.+... ...-+|...+..+
T Consensus 148 i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWAC 224 (967)
T ss_pred EEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccccceeEEE
Confidence 7799999999999986333333577886544 8889999999999999999999999987522 2345799999999
Q ss_pred EEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC
Q 024185 143 KFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 143 ~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
.|.|+ .+++++.|-+.++|+. +++.+..+..|.. ..+..++..++....++++.|+.+++||+..
T Consensus 225 ~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 225 CFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred Eeccc--eeEEeccceEEEEEec-ccceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99998 8999999999999974 4555667777765 3588899999999999999999999999753
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-09 Score=81.03 Aligned_cols=187 Identities=5% Similarity=-0.097 Sum_probs=131.2
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI 142 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 142 (271)
+..++.|.++++.+++-+.......... ...+++++|++++++.+....|..|.+......... .......+.-.+.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYN 209 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eEecccCCCceee
Confidence 4467888888888887655444444333 566999999999999999999999998765532222 2344455667788
Q ss_pred EEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecC---CCCCceeeEEECCCCC--EEEEecCCCcEEEEEcCCceeEEE
Q 024185 143 KFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE---PSPNTNTEATFTPDGQ--YVVSGSGDGTLHAWNINTRNEVAC 217 (271)
Q Consensus 143 ~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~ 217 (271)
.|+.....+|++..||++.+||++........... .+.+.+..+.|+|-|. +|+..-.-+.+++.|+++++..+.
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 99999999999999999999999876544433221 1236689999998654 455555567899999999877665
Q ss_pred ecC-------Cc-ceeEEEEEecCCcEEEEeC-CeEEEEcCCCC
Q 024185 218 WNG-------NI-GVVACLKWAPRRAMFVAAS-SVLSFWIPNPS 252 (271)
Q Consensus 218 ~~~-------~~-~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~ 252 (271)
+.. |. ..|..-.|+.++.-+.+.+ -.+.-|++.+.
T Consensus 290 I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~sr 333 (344)
T KOG4532|consen 290 IVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSR 333 (344)
T ss_pred EecCccccccccccccccccccCCCcccccccchhhheeecccc
Confidence 422 22 2367777777776666555 44556666554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-08 Score=77.17 Aligned_cols=202 Identities=14% Similarity=0.157 Sum_probs=137.7
Q ss_pred EeeEEecCCchhhhhhhhhhccCceEEEEEecC-cce---eEEEecC-C----------cceEEEcCCCCEEEEEec-CC
Q 024185 49 RGLFLSACLQLMIALCLVLLTTALEYGIFVLML-ASF---QGILRLR-G----------RPTVAFDQQGLVFAVAME-AG 112 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~---~~~~~~~-~----------~~~~~~~~~~~~l~~~~~-d~ 112 (271)
..++++++++++++ +.-..|.|.++-++. |.. ++.+... . .-...+.|++++|++..- -.
T Consensus 92 ~yvsvd~~g~~vf~----AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 92 CYVSVDEDGRFVFV----ANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred eEEEECCCCCEEEE----EEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence 56889999998422 445578999998865 332 2222111 1 334889999999988842 34
Q ss_pred eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CCeEEEEECCCC--e--EEEEeec----CCCCCce
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGG--E--KRCGFSL----EPSPNTN 183 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~--~--~~~~~~~----~~~~~~v 183 (271)
.|.+|++..+++.+.....++ ....-+.|.|+|++++....++ +++|.+|..... + .++.+.. ..+..+.
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred eEEEEEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence 799999998877555555443 3467899999999999887776 899999998763 2 2222211 1222456
Q ss_pred eeEEECCCCCEEEEecC-CCcEEEEEcCC--cee--EEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcC--CCCC
Q 024185 184 TEATFTPDGQYVVSGSG-DGTLHAWNINT--RNE--VACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIP--NPSS 253 (271)
Q Consensus 184 ~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~--~~~~ 253 (271)
..+..+|||++|.++.. ...|.++.+.. ++. +.....+....+...++|+|++|+++. ..+.+|.. ++++
T Consensus 247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGR 326 (346)
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCce
Confidence 77999999999998866 34788887764 332 222334444568899999999999997 55888866 4454
Q ss_pred CC
Q 024185 254 NS 255 (271)
Q Consensus 254 ~~ 255 (271)
+.
T Consensus 327 L~ 328 (346)
T COG2706 327 LT 328 (346)
T ss_pred EE
Confidence 43
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.5e-10 Score=83.83 Aligned_cols=194 Identities=11% Similarity=0.067 Sum_probs=131.2
Q ss_pred EeeEEecCCchhhhhhhhhhccCceEEEEEecCcce--eEEEecCCc--ceEEEcCC-CCEEEEEecCCeEEEEeCCCCC
Q 024185 49 RGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF--QGILRLRGR--PTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYD 123 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~--~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~ 123 (271)
.++.|++.+.. ++++..+|.+.+-+...... ++..+.|.. +..+|+.. .+.+++|++|+.+..||++-.+
T Consensus 125 lslD~~~~~~~-----i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 125 LSLDISTSGTK-----IFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred eEEEeeccCce-----EEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 45778888887 66778888888555444333 336677754 44777653 4788999999999999999544
Q ss_pred CCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCC-CeEEEEeecCCCCCceeeEEECCCCC--EEEEec
Q 024185 124 KGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTPDGQ--YVVSGS 199 (271)
Q Consensus 124 ~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~ 199 (271)
. +....-+-|...|.++.-+| .+.++++|+.|-.|++||.|+ ++++..-... +.|..+.++|.-. .++++-
T Consensus 200 ~--~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~---GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 200 T--FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG---GGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred c--eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc---cceEEEEecchhhhHHHHHHH
Confidence 2 22222456889999999888 578999999999999999985 5555443322 4599999999643 344444
Q ss_pred CCCcEEEEEcCCce-----eEEEecCCcceeEEEEEecCCcEEEEeC---CeEE-EEcCCCCC
Q 024185 200 GDGTLHAWNINTRN-----EVACWNGNIGVVACLKWAPRRAMFVAAS---SVLS-FWIPNPSS 253 (271)
Q Consensus 200 ~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~-iw~~~~~~ 253 (271)
.+| .+|.+...+. .....+.|.+-+..-.|......|++|+ +.++ +|-.-++.
T Consensus 275 h~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 275 HNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred hcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 443 6666665432 2334466777677777755556799988 4444 77655543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-10 Score=85.71 Aligned_cols=193 Identities=11% Similarity=0.159 Sum_probs=136.4
Q ss_pred eecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
.+-...|+++..+|.+..+.....-.+-...+.+..|...+..+.|+-.... +++.+.|..+.---.+.+..+..
T Consensus 77 ~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~-----V~s~~~dk~~~~hc~e~~~~lg~ 151 (404)
T KOG1409|consen 77 VSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEW-----VLSTGKDKQFAWHCTESGNRLGG 151 (404)
T ss_pred eccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCcee-----EEEeccccceEEEeeccCCcccc
Confidence 3444667788888888777655443333455667888999999988887777 77888888776555556655443
Q ss_pred EecCC-cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 88 LRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
+.... ...+.+.-. +...|...|.|....+..... .....+.+|.+.+.+++|.|....|++|..|..+.+||+.
T Consensus 152 Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~--~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 152 YNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGC--QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred eEeeccCCCCceeeE--EEEecccccceEEEEEeecCC--ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 32221 111222111 556676778887777765554 2366678999999999999999999999999999999986
Q ss_pred CCeEE-EEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC
Q 024185 167 GGEKR-CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 167 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
-.+-. ..+.+|.+. +..++.-+--+.+.+++.||.|.+|+++.
T Consensus 228 g~~g~~~el~gh~~k--V~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 228 GRKGTAYELQGHNDK--VQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred CCcceeeeeccchhh--hhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 54332 334555554 77777777788899999999999999853
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=90.38 Aligned_cols=157 Identities=17% Similarity=0.216 Sum_probs=109.8
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCC--CCcceEEEecCCccceEEEEEcCCCcEEEEEe---cCCeEEEEECCCCeE
Q 024185 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYD--KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT---TNNNIYVLDAYGGEK 170 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~~~d~~~~~~ 170 (271)
...+++++++|.+..+....+++..... .++.....+. ..-+.+.|..+......+. ....+.+|....+.+
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~---~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP---KRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc---cCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 6678889999999888887777765543 2223333332 2334444544444444443 345566666555443
Q ss_pred EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEe-cCCcceeEEEEEecCCcEEEEeC--CeEEEE
Q 024185 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFW 247 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw 247 (271)
. .+-+|-.. ++.++|+||+++++++..|..|++-.......+..+ -||..-|..++.-++.. |+++| +++++|
T Consensus 145 ~-~~lGhvSm--l~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 145 E-PILGHVSM--LLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLW 220 (390)
T ss_pred c-hhhhhhhh--hheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEE
Confidence 3 34456554 889999999999999999999999887766666665 57999999999887655 66665 789999
Q ss_pred cCCCCCCCcCCC
Q 024185 248 IPNPSSNSTDES 259 (271)
Q Consensus 248 ~~~~~~~~~~~~ 259 (271)
|+.+++.+...+
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999999987665
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-09 Score=87.48 Aligned_cols=171 Identities=14% Similarity=0.077 Sum_probs=107.4
Q ss_pred eEEEEEecCcceeEEEecCCcceEEEcCCCCE-EEEEec---CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC
Q 024185 73 EYGIFVLMLASFQGILRLRGRPTVAFDQQGLV-FAVAME---AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 148 (271)
.|.+-|.+.................|+|||+. ++..+. +..|+++|+.+++. ..+....+......|+|||
T Consensus 170 ~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-----~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-----EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred eEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-----EEEecCCCcEEeeEECCCC
Confidence 44444443333222233322334899999985 665433 35799999988774 2222344556678899999
Q ss_pred cEEEEEec---CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CC--cEEEEEcCCceeEEEecCCc
Q 024185 149 KSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGNI 222 (271)
Q Consensus 149 ~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~ 222 (271)
+.++.... +..|.++|+.+++..+ +...... .....|+|||+.++..+. .+ .|.+.|+.+++..+.... .
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~--d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g 320 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGI--DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-G 320 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEE-cccCCCc--cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-C
Confidence 88775432 4578888988776433 4333221 334789999998876654 23 688888887776443321 1
Q ss_pred ceeEEEEEecCCcEEEEeC--C---------eEEEEcCCCCCC
Q 024185 223 GVVACLKWAPRRAMFVAAS--S---------VLSFWIPNPSSN 254 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~~~--~---------~v~iw~~~~~~~ 254 (271)
. ....|+|||+.++..+ . .|.+.|++++..
T Consensus 321 ~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 321 K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred C--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 1 1348999999887664 2 477788877754
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.6e-10 Score=82.99 Aligned_cols=185 Identities=12% Similarity=0.004 Sum_probs=128.2
Q ss_pred hhhhccCceEEEEEecCcceeEEEecC---C-----cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLR---G-----RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT 136 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~---~-----~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 136 (271)
++-+..+|.|.++..........+++- . ..++.|++.+..++++..+|.+.+-+...... ......+.|.
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l--e~vq~wk~He 165 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVL--EKVQTWKVHE 165 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeee--eecccccccc
Confidence 566778888888876544433333322 1 23478899999999999999998665544433 2233567898
Q ss_pred cceEEEEEcC-CCcEEEEEecCCeEEEEECCC-CeEEEE-eecCCCCCceeeEEECC-CCCEEEEecCCCcEEEEEcCC-
Q 024185 137 AEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYG-GEKRCG-FSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINT- 211 (271)
Q Consensus 137 ~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~-~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~- 211 (271)
.+..-.+|+. +.+.+++|+.|+.+..||+|. ++.+.. .+.|.. .|.++.-+| .+.++++|+.|..|++||.++
T Consensus 166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~--GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS--GVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec--ceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 8888888887 457889999999999999993 333332 333443 387777665 577999999999999999994
Q ss_pred ceeEEEecCCcceeEEEEEecCC--cEEEEeC-CeEEEEcCCCCCC
Q 024185 212 RNEVACWNGNIGVVACLKWAPRR--AMFVAAS-SVLSFWIPNPSSN 254 (271)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~-~~v~iw~~~~~~~ 254 (271)
++++..-. -.+.|+.+.++|.- ++|+++= +-.+|-+.+.+..
T Consensus 244 ~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 244 GKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVL 288 (339)
T ss_pred cCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEeccccc
Confidence 66666554 34779999999953 3344432 5566666655443
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.1e-10 Score=91.52 Aligned_cols=168 Identities=17% Similarity=0.204 Sum_probs=120.0
Q ss_pred eEEecCCchhhhhhhhhhccCc---------eEEEEEecCcceeEEEe-cCCcceEEEcCCCCEEEEE--ecCCeEEEEe
Q 024185 51 LFLSACLQLMIALCLVLLTTAL---------EYGIFVLMLASFQGILR-LRGRPTVAFDQQGLVFAVA--MEAGAIKLFD 118 (271)
Q Consensus 51 ~~~s~~~~~~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~--~~d~~i~i~d 118 (271)
+.|++-|.-+.+ |++..-|. ++++.+++.....-.+. ...+.++.|+|+++-++++ -.=..+.++|
T Consensus 223 m~WN~~gt~LLv--LastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn 300 (566)
T KOG2315|consen 223 MKWNKLGTALLV--LASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN 300 (566)
T ss_pred EEeccCCceEEE--EEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence 556666665444 45554444 67777777444444444 3357789999999877765 4556899999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec---CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEE
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV 195 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 195 (271)
++..- .+.+ .+++=.++-|+|.|++++.++. -|.+.+||+.+.+++..+..... +-+.|+|||+++
T Consensus 301 lr~~~-----v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t----t~~eW~PdGe~f 369 (566)
T KOG2315|consen 301 LRGKP-----VFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT----TVFEWSPDGEYF 369 (566)
T ss_pred CCCCE-----eEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc----eEEEEcCCCcEE
Confidence 87543 4444 3577888999999999988876 58999999999888888776553 338999999999
Q ss_pred EEecC------CCcEEEEEcCCceeEEEecCCcceeEEEEEecC
Q 024185 196 VSGSG------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPR 233 (271)
Q Consensus 196 ~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 233 (271)
++++. |+.++||+. +|..++...- ......+.|-|-
T Consensus 370 lTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f-~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 370 LTATTAPRLRVDNGIKIWHY-TGSLLHEKMF-KSELLQVEWRPF 411 (566)
T ss_pred EEEeccccEEecCCeEEEEe-cCceeehhhh-hHhHhheeeeec
Confidence 98764 678999998 5666654321 124677788763
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.4e-09 Score=79.56 Aligned_cols=202 Identities=10% Similarity=0.063 Sum_probs=137.8
Q ss_pred EeeEEecCCchhhhhhhhhhccC-ceEEEEEecCcceeEEEecCCcce----EEEcCCCCEEEEEe-----cCCeEEEEe
Q 024185 49 RGLFLSACLQLMIALCLVLLTTA-LEYGIFVLMLASFQGILRLRGRPT----VAFDQQGLVFAVAM-----EAGAIKLFD 118 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~-----~d~~i~i~d 118 (271)
..++.+|..... ++.+-.- ....+||..+++..+.+....... -.|++||++|++.- ..|.|-+||
T Consensus 8 H~~a~~p~~~~a----vafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 8 HGVAAHPTRPEA----VAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred cceeeCCCCCeE----EEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 345666644432 2223332 346789999999888886554322 78999999999873 347899999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec------------------CCeEEEEECCCCeEEEEeec--CC
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT------------------NNNIYVLDAYGGEKRCGFSL--EP 178 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------------d~~i~~~d~~~~~~~~~~~~--~~ 178 (271)
....- ...-.+..|.-.-..+.+.|||+.|+++.. +.++...|..+|+.+.+... ..
T Consensus 84 ~~~~~---~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 84 AARGY---RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL 160 (305)
T ss_pred CcCCc---EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence 98321 235556666667788999999988877642 34677778888988877544 23
Q ss_pred CCCceeeEEECCCCCEEEEecCCC-------cEEEEEcCCceeEEEec-------CCcceeEEEEEecCCcEEEEeC---
Q 024185 179 SPNTNTEATFTPDGQYVVSGSGDG-------TLHAWNINTRNEVACWN-------GNIGVVACLKWAPRRAMFVAAS--- 241 (271)
Q Consensus 179 ~~~~v~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~--- 241 (271)
+...+..++++++|..++..-..| .+-+++. ++.+..+. .-.+.+-++++++++.+++++|
T Consensus 161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 334599999999998666554333 2344433 33333332 2235688999999999988887
Q ss_pred CeEEEEcCCCCCCCcCCC
Q 024185 242 SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 242 ~~v~iw~~~~~~~~~~~~ 259 (271)
+.+.+||..+++++....
T Consensus 239 g~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVP 256 (305)
T ss_pred CEEEEEECCCCCEeeccc
Confidence 789999999998876554
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.4e-11 Score=107.90 Aligned_cols=189 Identities=11% Similarity=0.132 Sum_probs=140.8
Q ss_pred EEeeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce
Q 024185 5 VFALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF 84 (271)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 84 (271)
.-+.|.....+-+..+|.+..+.--.+ +....-.-.+ ...+..+.|+-+|.. +..+..||.+.+|... .++
T Consensus 2214 ~~sHp~~~~Yltgs~dgsv~~~~w~~~--~~v~~~rt~g-~s~vtr~~f~~qGnk-----~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2214 MTSHPSDPYYLTGSQDGSVRMFEWGHG--QQVVCFRTAG-NSRVTRSRFNHQGNK-----FGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred ecCCCCCceEEecCCCceEEEEeccCC--CeEEEeeccC-cchhhhhhhcccCCc-----eeeeccCCceeecccC-Ccc
Confidence 345666677788888888888876555 2222121223 377888999999988 7788999999999996 555
Q ss_pred eEEEecCCcce--EEEcCCCCEEEEE---ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCe
Q 024185 85 QGILRLRGRPT--VAFDQQGLVFAVA---MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN 159 (271)
Q Consensus 85 ~~~~~~~~~~~--~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 159 (271)
....+.|.... +.|-. ..++++ +.++.+.+||..-... ....-..|.+.++++++-|..+.|++|+.+|.
T Consensus 2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~---~s~v~~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM---NSLVHTCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc---cceeeeecCCCceEEEEcCcceEEEecCCcCc
Confidence 55666676444 44433 556665 4568999999765433 12223789999999999999999999999999
Q ss_pred EEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec
Q 024185 160 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 160 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 219 (271)
|++||++..+.+++++. ++ ...++++|+..|.++||++.....++.++
T Consensus 2360 v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999998877766653 34 55689999999999999999887777764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-08 Score=75.20 Aligned_cols=192 Identities=13% Similarity=0.058 Sum_probs=128.1
Q ss_pred eEEecCCchhhhhhhhhhccCceEEEEEec-CcceeEEEecCCcce--EEEcCCCCEEEEEec-----------------
Q 024185 51 LFLSACLQLMIALCLVLLTTALEYGIFVLM-LASFQGILRLRGRPT--VAFDQQGLVFAVAME----------------- 110 (271)
Q Consensus 51 ~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~----------------- 110 (271)
-.||++|+++++..--.....|.|-+||.. +-+.+..+..+++-- +.+.|||+.|+++..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 789999998544322224557899999998 667788888887533 889999988887731
Q ss_pred -CCeEEEEeCCCCCCCcceEEEe--cCCccceEEEEEcCCCcEEEEEecCC-------eEEEEECCCCeEEEEeecCC--
Q 024185 111 -AGAIKLFDSRSYDKGPFDTFLV--GGDTAEVCDIKFSNDGKSMLLTTTNN-------NIYVLDAYGGEKRCGFSLEP-- 178 (271)
Q Consensus 111 -d~~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~-------~i~~~d~~~~~~~~~~~~~~-- 178 (271)
+.++...|..+++. +....+ .-|...+..+++.++|..++..-..| -+-+++ .++.+..+....
T Consensus 136 M~psL~~ld~~sG~l--l~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~ 211 (305)
T PF07433_consen 136 MQPSLVYLDARSGAL--LEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQ 211 (305)
T ss_pred cCCceEEEecCCCce--eeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHH
Confidence 23456667777775 444445 44778899999999987555443222 233333 233233333221
Q ss_pred ---CCCceeeEEECCCCCEEEEec-CCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcC
Q 024185 179 ---SPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIP 249 (271)
Q Consensus 179 ---~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~ 249 (271)
-..++-++++++++.++++.+ ..+.+.+||..+++.+....-. .+..++-.+++ ++++.+ |.+.....
T Consensus 212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~G~~~~~~~ 284 (305)
T PF07433_consen 212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQGQLIRLSP 284 (305)
T ss_pred HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCCCccEEEccC
Confidence 125688999999998876555 4689999999999998877543 35677777676 666655 65444433
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-09 Score=88.72 Aligned_cols=200 Identities=12% Similarity=0.167 Sum_probs=124.1
Q ss_pred eEEeeEEecCCchhhhhhhhhhc------cCceEEEEEecCcceeEEEecC--C---cceEEEcCCCCEEEEEecCCeEE
Q 024185 47 IRRGLFLSACLQLMIALCLVLLT------TALEYGIFVLMLASFQGILRLR--G---RPTVAFDQQGLVFAVAMEAGAIK 115 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~--~---~~~~~~~~~~~~l~~~~~d~~i~ 115 (271)
.+.-+.|||+.++++...----+ ....+.|||+.+|...+.+... . -+.+.||.|++++|--.. ..|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 35568899999994442100001 2257999999999988888763 2 244899999999887664 4577
Q ss_pred EEeCCCCCCCcceEEEec--C-----------------------------------------------------------
Q 024185 116 LFDSRSYDKGPFDTFLVG--G----------------------------------------------------------- 134 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~~--~----------------------------------------------------------- 134 (271)
||+.....+ +....++ +
T Consensus 330 IyEtpsf~l--ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 330 IYETPSFML--LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEecCceee--ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 776543211 0000000 0
Q ss_pred -------C-----------------------------ccceEEEEEcCCCcEEEEEec---CCeEEEEECCC-Ce---EE
Q 024185 135 -------D-----------------------------TAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYG-GE---KR 171 (271)
Q Consensus 135 -------~-----------------------------~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~-~~---~~ 171 (271)
| ...|...+|-|.|+.+++-+. ..++.+|...+ .. .+
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 0 034556677777766655433 34566666552 11 11
Q ss_pred EEeecCCCCCceeeEEECCCCCEEEEe---cCCCcEEEEEcCCceeEEE-ecCCcceeEEEEEecCCcEEEEeC------
Q 024185 172 CGFSLEPSPNTNTEATFTPDGQYVVSG---SGDGTLHAWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAAS------ 241 (271)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~------ 241 (271)
..+. . ...+.+.|+|.|++++.+ |..|.+.++|+........ ...|. ..+.+.|.|.|+|+++++
T Consensus 488 k~~d--k--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk 562 (698)
T KOG2314|consen 488 KELD--K--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHK 562 (698)
T ss_pred hhhc--c--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehhhhc
Confidence 2221 1 236779999999999866 4568899999875333222 23343 358899999999999986
Q ss_pred --CeEEEEcCCCCCC
Q 024185 242 --SVLSFWIPNPSSN 254 (271)
Q Consensus 242 --~~v~iw~~~~~~~ 254 (271)
..-++|++....+
T Consensus 563 ~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 563 VDNGYRIFTFQGRLL 577 (698)
T ss_pred cccceEEEEeecHHH
Confidence 2378998876543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.9e-10 Score=83.38 Aligned_cols=203 Identities=11% Similarity=0.109 Sum_probs=134.0
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-----eeEEEecCC--------------cceEEEcCCC--C
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-----FQGILRLRG--------------RPTVAFDQQG--L 103 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~--------------~~~~~~~~~~--~ 103 (271)
...++++.|.-.|.+ +++|...|.|.+|.-+... ....+++|. +..+.|..++ .
T Consensus 26 ad~ItaVefd~tg~Y-----latGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~ 100 (460)
T COG5170 26 ADKITAVEFDETGLY-----LATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN 100 (460)
T ss_pred cceeeEEEeccccce-----EeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence 456788899999998 8899999999999765432 122244442 4457776554 3
Q ss_pred EEEEEecCCeEEEEeCCCCCCC-----------------cc------e---------------EE-EecCCccceEEEEE
Q 024185 104 VFAVAMEAGAIKLFDSRSYDKG-----------------PF------D---------------TF-LVGGDTAEVCDIKF 144 (271)
Q Consensus 104 ~l~~~~~d~~i~i~d~~~~~~~-----------------~~------~---------------~~-~~~~~~~~v~~~~~ 144 (271)
.++..+.|.+|++|.+.....+ ++ . .. .-..|..-+.++.+
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~ 180 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF 180 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence 5677777999999987654110 00 0 00 01346667889999
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCeEEEE---eecCCCC---CceeeEEECCC-CCEEEEecCCCcEEEEEcCCcee---
Q 024185 145 SNDGKSMLLTTTNNNIYVLDAYGGEKRCG---FSLEPSP---NTNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNE--- 214 (271)
Q Consensus 145 s~~~~~l~~~~~d~~i~~~d~~~~~~~~~---~~~~~~~---~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~--- 214 (271)
+.|...++++ .|-+|.+|++.-...... ++.+.-. ..|++..|+|. .+.+...+..|.|++-|++....
T Consensus 181 NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 181 NSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred cCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 9988877665 477899999864322111 2212111 23677889986 34566677789999999984322
Q ss_pred ---EEE----------ecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCC
Q 024185 215 ---VAC----------WNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSS 253 (271)
Q Consensus 215 ---~~~----------~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~ 253 (271)
+.. +.+-...|..+.|+++|+++++-+ -++++||.+..+
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k 312 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK 312 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc
Confidence 111 111234688999999999999999 999999987643
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.4e-08 Score=74.94 Aligned_cols=182 Identities=14% Similarity=0.076 Sum_probs=115.9
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEe-cCC--c-cceE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV-GGD--T-AEVC 140 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~--~-~~v~ 140 (271)
++.++.++.++.||..+|+.+..+............++..++++..++.++.+|..+++. .... ... . ....
T Consensus 39 v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~----~W~~~~~~~~~~~~~~ 114 (238)
T PF13360_consen 39 VYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKV----LWSIYLTSSPPAGVRS 114 (238)
T ss_dssp EEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCE----EEEEEE-SSCTCSTB-
T ss_pred EEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcce----eeeecccccccccccc
Confidence 445579999999999999988888764321111133455567777788999999999886 3331 211 0 1122
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCC--c------eeeEEECCCCCEEEEecCCCcEEEEEcCCc
Q 024185 141 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN--T------NTEATFTPDGQYVVSGSGDGTLHAWNINTR 212 (271)
Q Consensus 141 ~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 212 (271)
......++..++++..++.+..+|+++|+.+.......... . ...-....++ .++.++.++.+.-+|+.++
T Consensus 115 ~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg 193 (238)
T PF13360_consen 115 SSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG 193 (238)
T ss_dssp -SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT
T ss_pred ccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC
Confidence 22333347788888889999999999999988877644221 1 1122222344 6777777775444499999
Q ss_pred eeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 213 NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
+.+.... . ..+..+ ..+++..++.++ +.+..||+++++.
T Consensus 194 ~~~w~~~-~-~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 194 EKLWSKP-I-SGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EEEEEEC-S-S-ECEC-EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred CEEEEec-C-CCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 9775443 2 223331 345566666555 9999999999864
|
... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.3e-07 Score=70.57 Aligned_cols=209 Identities=15% Similarity=0.163 Sum_probs=129.6
Q ss_pred ecceeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEe-cCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 9 PITQALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLS-ACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 9 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
+..+.|++. ..++.+..++...+.... +.... ...+.+. +++.+ +.+.. +.+.++|..+++...
T Consensus 9 ~~~g~l~~~D~~~~~i~~~~~~~~~~~~-----~~~~~--~~G~~~~~~~g~l------~v~~~-~~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 9 PRDGRLYWVDIPGGRIYRVDPDTGEVEV-----IDLPG--PNGMAFDRPDGRL------YVADS-GGIAVVDPDTGKVTV 74 (246)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTTEEEE-----EESSS--EEEEEEECTTSEE------EEEET-TCEEEEETTTTEEEE
T ss_pred CCCCEEEEEEcCCCEEEEEECCCCeEEE-----EecCC--CceEEEEccCCEE------EEEEc-CceEEEecCCCcEEE
Confidence 335566665 457888888877662211 22222 5556776 67665 23344 445566988886544
Q ss_pred EEec--C--C---cceEEEcCCCCEEEEEecC--------CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEE
Q 024185 87 ILRL--R--G---RPTVAFDQQGLVFAVAMEA--------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM 151 (271)
Q Consensus 87 ~~~~--~--~---~~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 151 (271)
.... . . .+.+++.|+|++.++.... |.+..++.. ++. ..+...-.....++|+|+++.|
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-----~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-----TVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-----EEEEEEESSEEEEEEETTSSEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-----EEEecCcccccceEECCcchhe
Confidence 4432 1 1 3449999999966665433 567777777 442 1122223557899999999977
Q ss_pred EE-EecCCeEEEEECCCC-e-E--EEEe-ecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCccee
Q 024185 152 LL-TTTNNNIYVLDAYGG-E-K--RCGF-SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVV 225 (271)
Q Consensus 152 ~~-~~~d~~i~~~d~~~~-~-~--~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 225 (271)
+. -+..+.|..+++... . . .+.+ .........-.++++.+|++.++....+.|.++|.. |+.+..+......+
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~ 227 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRP 227 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSE
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCE
Confidence 64 456888999998532 2 1 1222 222221236679999999988887788999999987 88888776554578
Q ss_pred EEEEEe-cCCcEEE
Q 024185 226 ACLKWA-PRRAMFV 238 (271)
Q Consensus 226 ~~~~~s-~~~~~l~ 238 (271)
++++|. |+.+.|.
T Consensus 228 t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 228 TNCAFGGPDGKTLY 241 (246)
T ss_dssp EEEEEESTTSSEEE
T ss_pred EEEEEECCCCCEEE
Confidence 999995 5655443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.8e-08 Score=88.27 Aligned_cols=199 Identities=10% Similarity=0.085 Sum_probs=132.0
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEE----EecCcceeEE-EecCCcceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIF----VLMLASFQGI-LRLRGRPTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iw----d~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
..+.+.++.+-++... ++.+..+|.|.+. +..+...... .-..++.+++||||+..|+..+.++++.+-+
T Consensus 74 ~~~~ivs~~yl~d~~~-----l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES-----LCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCcEEEEEeccCCCc-----EEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 3456777888888776 6677888889888 5544432211 2334688999999999999999888887754
Q ss_pred CCC-------------CCCCcce------E-------------------------EEecCCccceEEEEEcCCCcEEEEE
Q 024185 119 SRS-------------YDKGPFD------T-------------------------FLVGGDTAEVCDIKFSNDGKSMLLT 154 (271)
Q Consensus 119 ~~~-------------~~~~~~~------~-------------------------~~~~~~~~~v~~~~~s~~~~~l~~~ 154 (271)
..- ++.+++. . ..+. ....-..++|-.||+++|+.
T Consensus 149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEE
Confidence 210 0000000 0 0011 22345678999999999988
Q ss_pred ec---C---CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC---CCcEEEEEcCCceeEEEe----cCC
Q 024185 155 TT---N---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG---DGTLHAWNINTRNEVACW----NGN 221 (271)
Q Consensus 155 ~~---d---~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~----~~~ 221 (271)
+. . ..+++|+ ++|+...+-+.-.+ --.+++|.|.|+++|+... ...|.+|. ++|-....| ...
T Consensus 228 s~~~~~~~~R~iRVy~-ReG~L~stSE~v~g--Le~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~ 303 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYS-REGELQSTSEPVDG--LEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPE 303 (928)
T ss_pred EEEcCCCceeEEEEEC-CCceEEeccccCCC--ccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCC
Confidence 74 2 5799999 55775444332222 2345899999999998765 34566666 344443333 234
Q ss_pred cceeEEEEEecCCcEEEEeC-CeEEEEcCCCC
Q 024185 222 IGVVACLKWAPRRAMFVAAS-SVLSFWIPNPS 252 (271)
Q Consensus 222 ~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~ 252 (271)
...|..++|++|+..||..- ..|.+|...+.
T Consensus 304 ~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NY 335 (928)
T PF04762_consen 304 EEKVIELAWNSDSEILAVWLEDRVQLWTRSNY 335 (928)
T ss_pred CceeeEEEECCCCCEEEEEecCCceEEEeeCC
Confidence 56899999999999999876 67999987664
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=93.33 Aligned_cols=176 Identities=11% Similarity=0.111 Sum_probs=133.4
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF 144 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (271)
++-|+-...+..+|+++.+..+........+.-+..+++++.+|...|+|.+-|.++.+. ...+.+|.+.+.++..
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~----iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFET----IHTFDAHSGSISDFDV 225 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCce----eeeeeccccceeeeec
Confidence 445555666777888888777776655433545556789999999999999999999887 7788899999987654
Q ss_pred cCCCcEEEEEec---------CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCC-CCEEEEecCCCcEEEEEc---CC
Q 024185 145 SNDGKSMLLTTT---------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAWNI---NT 211 (271)
Q Consensus 145 s~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~---~~ 211 (271)
.|+.|++++. |..|++||+|..+.+.-+..+..+.. +.|+|. ...++.++..|...+.|. .+
T Consensus 226 --~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~f---lrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 226 --QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQF---LRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred --cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchh---hhhcccccceEEEEecccceeeccccccCC
Confidence 5788988874 66799999998887776666655422 778886 457888888999999994 33
Q ss_pred c-eeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcC
Q 024185 212 R-NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 212 ~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
. .-++.+......+..+.+|+++..++.+. |.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2 12333344455599999999999999997 89999973
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.8e-08 Score=73.19 Aligned_cols=208 Identities=13% Similarity=0.112 Sum_probs=125.7
Q ss_pred eeecceeEEeeecceeeEEEEeeccceee-EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee
Q 024185 7 ALPITQALLFARQNIILILLESLCGIYQC-MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ 85 (271)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 85 (271)
++..+.+++....+-.+..-...+..... ...+.-+.....-..++||||+.. ||.+...|+|++||+.... +
T Consensus 4 ~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tl-----La~a~S~G~i~vfdl~g~~-l 77 (282)
T PF15492_consen 4 ALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTL-----LAYAESTGTIRVFDLMGSE-L 77 (282)
T ss_pred eecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcE-----EEEEcCCCeEEEEecccce-e
Confidence 34455666666666555444333321111 122223333344556999999999 8889999999999996533 3
Q ss_pred EEEecC---------CcceEEEcCC---C---CEEEEEecCCeEEEEeCCCC---CCCcceEEEecCC-ccceEEEEEcC
Q 024185 86 GILRLR---------GRPTVAFDQQ---G---LVFAVAMEAGAIKLFDSRSY---DKGPFDTFLVGGD-TAEVCDIKFSN 146 (271)
Q Consensus 86 ~~~~~~---------~~~~~~~~~~---~---~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~-~~~v~~~~~s~ 146 (271)
..+... .+..+.|-+. . ..|++-...|.++-|-+..+ +......+.+..| ...|.++.|+|
T Consensus 78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 333221 1222444332 1 24566667888877765322 2112334455444 67899999999
Q ss_pred CCcEEEEEecC----C-------eEEEEECCCCeEE---------------------E--E---eec-CCCCCceeeEEE
Q 024185 147 DGKSMLLTTTN----N-------NIYVLDAYGGEKR---------------------C--G---FSL-EPSPNTNTEATF 188 (271)
Q Consensus 147 ~~~~l~~~~~d----~-------~i~~~d~~~~~~~---------------------~--~---~~~-~~~~~~v~~~~~ 188 (271)
..++|++|+.. + -+.-|.+-++.+- + . +.. ......|..+..
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 99998887641 1 2555654222110 0 0 000 112245888999
Q ss_pred CCCCCEEEEecCCCcEEEEEcCCceeEEEecC
Q 024185 189 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNG 220 (271)
Q Consensus 189 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 220 (271)
||||+.|++...+|.|.+|++.+-+....+.-
T Consensus 238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 99999999999999999999998877776643
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-08 Score=89.81 Aligned_cols=217 Identities=15% Similarity=0.142 Sum_probs=138.1
Q ss_pred EeeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec-----
Q 024185 6 FALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM----- 80 (271)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~----- 80 (271)
--++..+.++++.++|.+..+..... .+...++....-+..+.+++||||+.. ++..+.++++.+.+-.
T Consensus 82 ~yl~d~~~l~~~~~~Gdi~~~~~~~~-~~~~~~E~VG~vd~GI~a~~WSPD~El-----la~vT~~~~l~~mt~~fd~i~ 155 (928)
T PF04762_consen 82 QYLADSESLCIALASGDIILVREDPD-PDEDEIEIVGSVDSGILAASWSPDEEL-----LALVTGEGNLLLMTRDFDPIS 155 (928)
T ss_pred EeccCCCcEEEEECCceEEEEEccCC-CCCceeEEEEEEcCcEEEEEECCCcCE-----EEEEeCCCEEEEEeccceEEE
Confidence 34456678889999999998832111 111233334556778999999999998 6666777877775321
Q ss_pred ----------C--------cceeEEEec------------C--------------CcceEEEcCCCCEEEEEec---C--
Q 024185 81 ----------L--------ASFQGILRL------------R--------------GRPTVAFDQQGLVFAVAME---A-- 111 (271)
Q Consensus 81 ----------~--------~~~~~~~~~------------~--------------~~~~~~~~~~~~~l~~~~~---d-- 111 (271)
. |+...+|++ . ....++|-.||.++|+.+- .
T Consensus 156 E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~ 235 (928)
T PF04762_consen 156 EVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGS 235 (928)
T ss_pred EeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCc
Confidence 0 011011111 0 1233889999999998864 2
Q ss_pred -CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec---CCeEEEEECCCCeEEEEeecC--CCCCceee
Q 024185 112 -GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLE--PSPNTNTE 185 (271)
Q Consensus 112 -~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~--~~~~~v~~ 185 (271)
..+++|+.+ +.. ...-..-.+--.+++|-|.|+++|+.-. ...|.+|. ++|-.-..|... .....+..
T Consensus 236 ~R~iRVy~Re-G~L----~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 236 RRVIRVYSRE-GEL----QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred eeEEEEECCC-ceE----EeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeE
Confidence 478999976 443 2222222333457899999999988765 45677787 566555555543 23345899
Q ss_pred EEECCCCCEEEEecCCCcEEEEEcCCcee--EEEecC-CcceeEEEEEecCCc
Q 024185 186 ATFTPDGQYVVSGSGDGTLHAWNINTRNE--VACWNG-NIGVVACLKWAPRRA 235 (271)
Q Consensus 186 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~-~~~~v~~~~~s~~~~ 235 (271)
+.|++|+..|+....|. |.+|-..+-.- .+.+.- ....+..+.|+|...
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p 361 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP 361 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence 99999999999877664 99999877442 223321 123345599999543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.9e-10 Score=85.80 Aligned_cols=158 Identities=17% Similarity=0.197 Sum_probs=109.3
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc----eeEEEecCC-cceEEEcCCCCEEEEEecCC---eEEEEeC
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS----FQGILRLRG-RPTVAFDQQGLVFAVAMEAG---AIKLFDS 119 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~---~i~i~d~ 119 (271)
......++.+++ ++.+..+....+++..... ......... ...+.+..+......+...| .+.+|..
T Consensus 65 ~~~~~~s~~~~l-----lAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRL-----VAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceE-----EEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 334556777777 6667777776677765433 233333332 33466666666555554444 4445554
Q ss_pred CCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEee-cCCCCCceeeEEECCCCCEEEEe
Q 024185 120 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSG 198 (271)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~ 198 (271)
..+. ...+-||-..++.++|+||+++++++..|..|++-.....-.+..+. +|.. .|..++.-++. .|+++
T Consensus 140 ~~~~-----~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e--FVS~isl~~~~-~LlS~ 211 (390)
T KOG3914|consen 140 DSGR-----CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE--FVSTISLTDNY-LLLSG 211 (390)
T ss_pred cccC-----cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh--heeeeeeccCc-eeeec
Confidence 4433 33455899999999999999999999999999998877655555543 3554 48888887654 58999
Q ss_pred cCCCcEEEEEcCCceeEEEe
Q 024185 199 SGDGTLHAWNINTRNEVACW 218 (271)
Q Consensus 199 ~~dg~i~iwd~~~~~~~~~~ 218 (271)
+.|+++++||+.+|+.+.++
T Consensus 212 sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 212 SGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred CCCCcEEEEecccCCccccc
Confidence 99999999999999987654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.2e-08 Score=76.38 Aligned_cols=185 Identities=10% Similarity=0.058 Sum_probs=124.4
Q ss_pred ceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEec----------CCeEEEEeCCCCCCCcceEEEecCC-----c
Q 024185 72 LEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAME----------AGAIKLFDSRSYDKGPFDTFLVGGD-----T 136 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~-----~ 136 (271)
++|.+.|.++++.+.++.....+...++||++.|+++.. +..|.+||..+.+. .....+... .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--IADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE--EeEEccCCCchhhcc
Confidence 889999999999999998665444349999998888754 78999999999876 222332211 1
Q ss_pred cceEEEEEcCCCcEEEEEec--CCeEEEEECCCCeEEEEeecCCCC-----------------------------Cceee
Q 024185 137 AEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSP-----------------------------NTNTE 185 (271)
Q Consensus 137 ~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~-----------------------------~~v~~ 185 (271)
.....++++|||+++++... +..+.+.|+.+++.+..+...... .....
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence 22347899999999998763 689999999988766554321110 00011
Q ss_pred E--------------EECC-CCCEEEEecCCCcEEEEEcCC-----ceeEEEecC-------CcceeEEEEEecCCcEEE
Q 024185 186 A--------------TFTP-DGQYVVSGSGDGTLHAWNINT-----RNEVACWNG-------NIGVVACLKWAPRRAMFV 238 (271)
Q Consensus 186 ~--------------~~~~-~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~-------~~~~v~~~~~s~~~~~l~ 238 (271)
. .|.+ +|+++....+ |.|.+.|+.. .+....+.. ..+...-++++|+++.+.
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 1 1223 7777776666 9999999643 222222211 223345599999988777
Q ss_pred EeC------------CeEEEEcCCCCCCCcCCC
Q 024185 239 AAS------------SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 239 ~~~------------~~v~iw~~~~~~~~~~~~ 259 (271)
... +.|.++|..+++......
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~ 296 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE 296 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEe
Confidence 631 569999999988776544
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.3e-08 Score=71.93 Aligned_cols=203 Identities=15% Similarity=0.175 Sum_probs=123.7
Q ss_pred eEEecCCchhhhhhhhhhccCceEEEEEecCcc--eeEEEecC----Ccce-EEEcCCCCEEEEEecCCeEEEEeCCCCC
Q 024185 51 LFLSACLQLMIALCLVLLTTALEYGIFVLMLAS--FQGILRLR----GRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYD 123 (271)
Q Consensus 51 ~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~----~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 123 (271)
++.+++|+.+ ..-.|..|.|-..++.- .+..-+.+ .-+. ++||||+..||.+...|+|+++|+....
T Consensus 3 ~~~~~~Gk~l------Ai~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 3 LALSSDGKLL------AILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred eeecCCCcEE------EEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence 4566777753 33556666665443321 22222221 2233 9999999999999999999999998654
Q ss_pred CCcceE-EEe-cCCccceEEEEEcCCC------cEEEEEecCCeEEEEECCC-----CeEEEEeecCCC-CCceeeEEEC
Q 024185 124 KGPFDT-FLV-GGDTAEVCDIKFSNDG------KSMLLTTTNNNIYVLDAYG-----GEKRCGFSLEPS-PNTNTEATFT 189 (271)
Q Consensus 124 ~~~~~~-~~~-~~~~~~v~~~~~s~~~------~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~~~-~~~v~~~~~~ 189 (271)
.-.+.. ... ..-...|..+.|.+.. ..|++-..+|.++-|-+.. .+..+.+..... +..|.++.++
T Consensus 77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH 156 (282)
T ss_pred eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence 300000 000 1112456667665531 2466666778877776532 234444443222 3459999999
Q ss_pred CCCCEEEEecCC----C-------cEEEEEcCCceeEEE--------------------e---------cCCcceeEEEE
Q 024185 190 PDGQYVVSGSGD----G-------TLHAWNINTRNEVAC--------------------W---------NGNIGVVACLK 229 (271)
Q Consensus 190 ~~~~~l~~~~~d----g-------~i~iwd~~~~~~~~~--------------------~---------~~~~~~v~~~~ 229 (271)
|..++|+.|+.. + -+.-|.+-++.+-.. + ......|..|.
T Consensus 157 p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmS 236 (282)
T PF15492_consen 157 PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMS 236 (282)
T ss_pred CCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEE
Confidence 998888877542 1 255665433221110 0 11245689999
Q ss_pred EecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 230 WAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 230 ~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
.||||..|++.. |.|.+|++.+-+++..-.
T Consensus 237 lSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 237 LSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred ECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 999999999997 999999999987766544
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-07 Score=72.07 Aligned_cols=196 Identities=16% Similarity=0.193 Sum_probs=123.5
Q ss_pred eeEEec-CCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEc-CCCCEEEEEecCCeEEEEeCCCCCCCcc
Q 024185 50 GLFLSA-CLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFD-QQGLVFAVAMEAGAIKLFDSRSYDKGPF 127 (271)
Q Consensus 50 ~~~~s~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 127 (271)
+..|.+ ++.+ +++--..+.|..|+..+++. ..+.......+++. +++ .++.+... .+.++|..+++...+
T Consensus 4 gp~~d~~~g~l-----~~~D~~~~~i~~~~~~~~~~-~~~~~~~~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRL-----YWVDIPGGRIYRVDPDTGEV-EVIDLPGPNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEE-----EEEETTTTEEEEEETTTTEE-EEEESSSEEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEE
T ss_pred ceEEECCCCEE-----EEEEcCCCEEEEEECCCCeE-EEEecCCCceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEE
Confidence 356776 5555 45666788999999977664 33444445567887 564 45555544 455669888764222
Q ss_pred eEEEecC-CccceEEEEEcCCCcEEEEEecC--------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEE-E
Q 024185 128 DTFLVGG-DTAEVCDIKFSNDGKSMLLTTTN--------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-S 197 (271)
Q Consensus 128 ~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~ 197 (271)
....... .......+++.|+|++.++.... |.+..++.. ++.......-. ....++|+|+++.|+ +
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~---~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG---FPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES---SEEEEEEETTSSEEEEE
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc---cccceEECCcchheeec
Confidence 2221122 34678899999999966665532 568888876 55444333322 267799999999776 5
Q ss_pred ecCCCcEEEEEcCCce-------eEEEecCCcceeEEEEEecCCcEEEEe--CCeEEEEcCCCCCCCcCC
Q 024185 198 GSGDGTLHAWNINTRN-------EVACWNGNIGVVACLKWAPRRAMFVAA--SSVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~v~iw~~~~~~~~~~~ 258 (271)
-+..+.|..+++.... ....+....+..-.+++..+|++.++. ++.|.+++.+ +++....
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEE
Confidence 5667889999986322 122233333347889999999977764 3889999988 6655443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.9e-09 Score=83.34 Aligned_cols=231 Identities=13% Similarity=0.114 Sum_probs=160.3
Q ss_pred ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhcc-CceEEEEEecCcceeEEEecCCcce-EE
Q 024185 20 NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTT-ALEYGIFVLMLASFQGILRLRGRPT-VA 97 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~-~~ 97 (271)
+|.+..|.... ..-...+..+..|.+.+.+++.+-++.. +.|.+. |..++++|+++-.....++....+- +.
T Consensus 29 DGh~KFWkKs~-isGvEfVKhFraHL~~I~sl~~S~dg~L-----~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~ 102 (558)
T KOG0882|consen 29 DGHKKFWKKSR-ISGVEFVKHFRAHLGVILSLAVSYDGWL-----FRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE 102 (558)
T ss_pred chhhhhcCCCC-ccceeehhhhHHHHHHHHhhhcccccee-----EeeccCcccceeEEEeeccchhhhcccccCCCceE
Confidence 44444444322 1123456677888888999999999987 778676 9999999999877665554443222 33
Q ss_pred E-cCCC---CEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC-----
Q 024185 98 F-DQQG---LVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG----- 167 (271)
Q Consensus 98 ~-~~~~---~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~----- 167 (271)
| ...| ..++++ ..++.+.++|-....+.. ....+-|..+|.++.++|.+..+.+....|.|.-|....
T Consensus 103 wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~--~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP 180 (558)
T KOG0882|consen 103 WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD--GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP 180 (558)
T ss_pred EecCCCCeeeeEEeecccCCCcEEECCcCCcCcc--ceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCc
Confidence 3 2233 244444 567899999987655422 333456889999999999999999998899999999762
Q ss_pred -CeEEEEee-------cCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec--------------------
Q 024185 168 -GEKRCGFS-------LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-------------------- 219 (271)
Q Consensus 168 -~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------- 219 (271)
.+....++ .........++.|+|+|..+.+-+.|..|++++.++++.++.+.
T Consensus 181 r~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Ve 260 (558)
T KOG0882|consen 181 RTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVE 260 (558)
T ss_pred cccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceee
Confidence 11111111 11112346789999999999999999999999999988765432
Q ss_pred ------------CCcc-eeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCCcCC
Q 024185 220 ------------GNIG-VVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 220 ------------~~~~-~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~~~~ 258 (271)
.|.. .-+.+.|...|++|+-++ =-|++.++.++++.+..
T Consensus 261 lgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 261 LGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence 1211 234677888899999998 66899999988766543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.8e-08 Score=77.26 Aligned_cols=203 Identities=14% Similarity=0.077 Sum_probs=138.1
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecC---------
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEA--------- 111 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------- 111 (271)
+....-.+....+||.|.+ |++.. ...|.+|+-.....+..+....+.-+.|+|++++|.+-+..
T Consensus 28 ~~~~~~p~~~~~~SP~G~~-----l~~~~-~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~ 101 (561)
T COG5354 28 FESENWPVAYVSESPLGTY-----LFSEH-AAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEI 101 (561)
T ss_pred ccccCcchhheeecCcchh-----eehhh-ccceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhcc
Confidence 4445667788999999998 44444 44588999888887778888888889999999999986543
Q ss_pred ------CeEEEEeCCCCCC--------Cc-----ceEEEec--------C-----Cc---------------cceEEEEE
Q 024185 112 ------GAIKLFDSRSYDK--------GP-----FDTFLVG--------G-----DT---------------AEVCDIKF 144 (271)
Q Consensus 112 ------~~i~i~d~~~~~~--------~~-----~~~~~~~--------~-----~~---------------~~v~~~~~ 144 (271)
..+.+||..++.. .+ +..+... + |. ..+....|
T Consensus 102 sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 102 SPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred CCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEe
Confidence 2499999987653 00 1111100 0 11 45777888
Q ss_pred cCCC--cEEEE-----EecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec-----------CCCcEEE
Q 024185 145 SNDG--KSMLL-----TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-----------GDGTLHA 206 (271)
Q Consensus 145 s~~~--~~l~~-----~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~dg~i~i 206 (271)
+|.+ ..|+. .+..+.+++|.+..++.+.+....... -..+.|.+.|++++.-- ....+++
T Consensus 182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~--~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS--GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred cCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec--ccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence 8853 33443 345788999998877666553332222 33488999999876321 1246888
Q ss_pred EEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC----CeEEEEcCCCC
Q 024185 207 WNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS----SVLSFWIPNPS 252 (271)
Q Consensus 207 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~~v~iw~~~~~ 252 (271)
+++....+.... .-.++|...+|.|.++.+++.+ ..+.++|++..
T Consensus 260 ~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 260 LRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred Eeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc
Confidence 888744444433 5678999999999998887776 45888888776
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-07 Score=85.48 Aligned_cols=196 Identities=16% Similarity=0.138 Sum_probs=124.4
Q ss_pred eeEEecC-CchhhhhhhhhhccCceEEEEEecCcceeEEEec--C--------------CcceEEEcCCCCEEEEEe-cC
Q 024185 50 GLFLSAC-LQLMIALCLVLLTTALEYGIFVLMLASFQGILRL--R--------------GRPTVAFDQQGLVFAVAM-EA 111 (271)
Q Consensus 50 ~~~~s~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~--------------~~~~~~~~~~~~~l~~~~-~d 111 (271)
.+++++. +.. +++-...+.|+++|.. +..+..+.. . ....++++++++.|+++. .+
T Consensus 572 gvavd~~~g~l-----yVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 572 KLAIDLLNNRL-----FISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred eEEEECCCCeE-----EEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 4677765 444 5577788899999985 444433322 0 124489999888777764 45
Q ss_pred CeEEEEeCCCCCCCcceEEEecCC---------------ccceEEEEEcC-CCcEEEEEecCCeEEEEECCCCeEEEEee
Q 024185 112 GAIKLFDSRSYDKGPFDTFLVGGD---------------TAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFS 175 (271)
Q Consensus 112 ~~i~i~d~~~~~~~~~~~~~~~~~---------------~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 175 (271)
+.|+.+|..++.. ..+.-.+. -.....++++| ++..+++.+.++.|++||..++... .+.
T Consensus 646 ~~Ir~id~~~~~V---~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~ 721 (1057)
T PLN02919 646 HALREIDFVNETV---RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS 721 (1057)
T ss_pred ceEEEEecCCCEE---EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe
Confidence 6899999876542 11110000 11245789999 5566666677899999998877543 222
Q ss_pred cCC-------------CCCceeeEEECCCCCEEE-EecCCCcEEEEEcCCceeEEEec-------------CC-------
Q 024185 176 LEP-------------SPNTNTEATFTPDGQYVV-SGSGDGTLHAWNINTRNEVACWN-------------GN------- 221 (271)
Q Consensus 176 ~~~-------------~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~-------------~~------- 221 (271)
+.. .-.....++++|+++.|+ +-+.++.|++||+.++....... .+
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 110 002345699999998554 55567899999998765321110 00
Q ss_pred -cceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 222 -IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 222 -~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
-....+++++++|+++++-+ +.|++||..++...
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 11236889999998777665 78999999876543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.8e-08 Score=79.22 Aligned_cols=180 Identities=11% Similarity=0.025 Sum_probs=114.3
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcc-------eEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEec--CC
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRP-------TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG--GD 135 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~ 135 (271)
++.++.+|.++.||.++|+.+..++..... ..... +..++.+..++.+..+|.++++. ..... ..
T Consensus 148 v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~----~W~~~~~~~ 221 (377)
T TIGR03300 148 VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQP----LWEQRVALP 221 (377)
T ss_pred EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCE----eeeeccccC
Confidence 345677899999999999987776543211 11221 24677888889999999988875 22211 00
Q ss_pred cc--c---eEEEEEcC--CCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEE
Q 024185 136 TA--E---VCDIKFSN--DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 136 ~~--~---v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 208 (271)
.+ . ...+.-+| .+..+++++.+|.++.||..+++.+....... ...+. .++..++.++.+|.+..+|
T Consensus 222 ~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~~~p~--~~~~~vyv~~~~G~l~~~d 295 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS----YQGPA--VDDNRLYVTDADGVVVALD 295 (377)
T ss_pred CCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC----ccCce--EeCCEEEEECCCCeEEEEE
Confidence 00 0 00111111 24578888889999999999998877654221 11122 2456788888999999999
Q ss_pred cCCceeEEEecCCc-ceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCC
Q 024185 209 INTRNEVACWNGNI-GVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 209 ~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~ 258 (271)
..+++.+....... ....+... .+..+++++ |.+.++|..+++.+...
T Consensus 296 ~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 296 RRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred CCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 99998876653221 11222222 345566655 88999999988876443
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-07 Score=77.27 Aligned_cols=219 Identities=11% Similarity=0.037 Sum_probs=131.1
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
+.++++..++.+..++..+|.. +-.+............ ++.. ++.++.++.++.+|.++|+.+......
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~----~W~~~~~~~~~~~p~v--~~~~-----v~v~~~~g~l~ald~~tG~~~W~~~~~ 134 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKR----LWRVDLDERLSGGVGA--DGGL-----VFVGTEKGEVIALDAEDGKELWRAKLS 134 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcE----eeeecCCCCcccceEE--cCCE-----EEEEcCCCEEEEEECCCCcEeeeeccC
Confidence 4556666678888888777732 1112222221112222 2343 456778999999999999987766543
Q ss_pred Cc-ce-EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccce-----EEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 92 GR-PT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV-----CDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 92 ~~-~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
.. .. ... .+..++.+..++.++.+|.++++. ........... .+.... + ..++.+..++.+..+|
T Consensus 135 ~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~----~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald 206 (377)
T TIGR03300 135 SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGER----LWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALD 206 (377)
T ss_pred ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCce----eeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEE
Confidence 31 11 112 345677788899999999998886 33332221111 111111 2 4677888889999999
Q ss_pred CCCCeEEEEeecCCCC--Cc------e-eeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCc
Q 024185 165 AYGGEKRCGFSLEPSP--NT------N-TEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA 235 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~--~~------v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 235 (271)
.++|+.+......... .. + ....+ .+..++.++.+|.++.+|..+++.+...... . ...+.. ++.
T Consensus 207 ~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~-~~~p~~--~~~ 280 (377)
T TIGR03300 207 LQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-S-YQGPAV--DDN 280 (377)
T ss_pred ccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC-C-ccCceE--eCC
Confidence 9999876654321110 00 0 11112 2457788888999999999999887766521 1 122222 344
Q ss_pred EEEEeC--CeEEEEcCCCCCCC
Q 024185 236 MFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 236 ~l~~~~--~~v~iw~~~~~~~~ 255 (271)
.++.++ |.+..+|..+++.+
T Consensus 281 ~vyv~~~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 281 RLYVTDADGVVVALDRRSGSEL 302 (377)
T ss_pred EEEEECCCCeEEEEECCCCcEE
Confidence 444443 88999999888754
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.9e-08 Score=76.69 Aligned_cols=198 Identities=14% Similarity=0.143 Sum_probs=132.2
Q ss_pred ceEEeeEEecCCchh--hhhhhhhhccCceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEe-----------c
Q 024185 46 GIRRGLFLSACLQLM--IALCLVLLTTALEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAM-----------E 110 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-----------~ 110 (271)
..+....++|.++.- ++..-=..+..+.+++|.+..+..+.+-..- ....+.|.+.|++|+.-. .
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 345556777764331 1100113466788999988766655443332 223489999998776421 1
Q ss_pred CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe--cCCeEEEEECCCCeEEEEeecCCCCCceeeEEE
Q 024185 111 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 111 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~ 188 (271)
..++++++++.... ... ..-.++|..+.|.|.++.+++.+ .+..+.++|++.. ....+. ... =..+.|
T Consensus 254 esnLyl~~~~e~~i----~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~--rNT~~f 323 (561)
T COG5354 254 ESNLYLLRITERSI----PVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQK--RNTIFF 323 (561)
T ss_pred cceEEEEeeccccc----cee-ccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC--Ccc--cccccc
Confidence 35788999885543 111 14468999999999988877654 6888999999866 333332 222 233889
Q ss_pred CCCCCEEEEecCC---CcEEEEEcCCceeEE-EecCCcceeEEEEEecCCcEEEEeC--------CeEEEEcCCCCCCC
Q 024185 189 TPDGQYVVSGSGD---GTLHAWNINTRNEVA-CWNGNIGVVACLKWAPRRAMFVAAS--------SVLSFWIPNPSSNS 255 (271)
Q Consensus 189 ~~~~~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~--------~~v~iw~~~~~~~~ 255 (271)
+|.+++++.++-| |.+-+||........ .+.+.+. +-+.|+||+.++.+.- +.++|||+...+.-
T Consensus 324 sp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 324 SPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred cCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc--eEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 9999999987765 789999988765554 6655443 5678999999887763 45999999775543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-09 Score=88.72 Aligned_cols=157 Identities=11% Similarity=0.135 Sum_probs=120.8
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCC----Cc-------ceEEEecCCccceEEEEEcCCCcEEEEEecCCeEE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK----GP-------FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 161 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 161 (271)
..|++|+.+..++++|+.||.+++..+.+... .+ .-...+.||.+.|.-+.|+.+.+.|-+...+|-|.
T Consensus 17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi 96 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII 96 (1189)
T ss_pred EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence 46799999999999999999999998765332 11 11234789999999999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE--EecCCcceeEEEEEecCCcEEEE
Q 024185 162 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA--CWNGNIGVVACLKWAPRRAMFVA 239 (271)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~ 239 (271)
+|-+-.+.-...+........|.+++|+.||..+...-.||.|.+=.+..+ .+. .+++ .-...+.|++|.+.++.
T Consensus 97 VWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN-RIwgKeLkg--~~l~hv~ws~D~~~~Lf 173 (1189)
T KOG2041|consen 97 VWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN-RIWGKELKG--QLLAHVLWSEDLEQALF 173 (1189)
T ss_pred EEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc-eecchhcch--heccceeecccHHHHHh
Confidence 999988766555544555566999999999999999999999888776533 332 2222 22457889999886655
Q ss_pred eC--CeEEEEcCCCC
Q 024185 240 AS--SVLSFWIPNPS 252 (271)
Q Consensus 240 ~~--~~v~iw~~~~~ 252 (271)
+- |...+||.+..
T Consensus 174 ~~ange~hlydnqgn 188 (1189)
T KOG2041|consen 174 KKANGETHLYDNQGN 188 (1189)
T ss_pred hhcCCcEEEeccccc
Confidence 53 88999987653
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-10 Score=98.36 Aligned_cols=201 Identities=16% Similarity=0.173 Sum_probs=146.7
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcce--EEEcCCCCEEEEEecCC--
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPT--VAFDQQGLVFAVAMEAG-- 112 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~-- 112 (271)
.++.|+.++...+|++|+.+.++ ++.|+..|.|++++..+|.......+|+... +.-+.||..+.+.+.-.
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~h-----L~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNH-----LAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred cchhhhccccceeeEEeecCCce-----EEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence 34567888899999999999998 8899999999999999999998898886443 77777888776654333
Q ss_pred eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC--CceeeEEECC
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP--NTNTEATFTP 190 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~v~~~~~~~ 190 (271)
-..+|++..-- .+ ...+ ..-.++.|+.....-+.|.......+||+.++.++.++-..... ..-....|+|
T Consensus 1168 lsaLW~~~s~~-~~--~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1168 LSALWDASSTG-GP--RHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred hHHHhcccccc-Cc--cccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 46789987522 12 2222 34578899987666666766678999999999877763222111 1124588999
Q ss_pred CCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeCCeEEEEcCCCCCCCcCC
Q 024185 191 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 191 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~v~iw~~~~~~~~~~~ 258 (271)
+.++++- || .+||++..+.++.|......+ .=.|+|.|.-++.-+ .|||+++.+++...
T Consensus 1241 ~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS---EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1241 CDTLILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS---EIWDMRTFKLLHSV 1299 (1516)
T ss_pred CcceEee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec---hhhhhHHHHHHhcC
Confidence 9988774 33 489999888888776444222 335999999888877 68999998776543
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-08 Score=81.25 Aligned_cols=191 Identities=18% Similarity=0.235 Sum_probs=124.1
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCc-ceEEEcCCCCEEEEE-ecCC--eEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGR-PTVAFDQQGLVFAVA-MEAG--AIKL 116 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~d~--~i~i 116 (271)
+......+..-.|+|+++.+++..+..+.. ..+.++|+++++....+...+. ...+|+|||++|+.+ ..|| .|++
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~-~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGC-PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCC-ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 444455666678899998755521111111 5689999999887766665443 348999999987766 4455 5666
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CC--eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
+|+.+... ..+....+.-..-.|+|||++++..+. .| .|.++|...+.. ..+...... -....|+|||+
T Consensus 267 ~dl~~~~~-----~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~--~~~p~~SpdG~ 338 (425)
T COG0823 267 MDLDGKNL-----PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG--NSNPVWSPDGD 338 (425)
T ss_pred EcCCCCcc-----eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC--CcCccCCCCCC
Confidence 77776653 223333344447789999999987765 33 477777766554 444433333 22588999999
Q ss_pred EEEEecC-CCc--EEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 194 YVVSGSG-DGT--LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 194 ~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
+++..+. +|. |.+.|+.++...+.+. .........|.|+|+.+...+
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 9987764 344 7777777666544443 334455678889988777665
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.9e-09 Score=75.62 Aligned_cols=162 Identities=11% Similarity=0.009 Sum_probs=101.5
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee-EEEecC--CcceEEEcCCCCEEEEEe-----c
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ-GILRLR--GRPTVAFDQQGLVFAVAM-----E 110 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~--~~~~~~~~~~~~~l~~~~-----~ 110 (271)
..+..+.+.-.+-+.+-.+.. ++.+..||.+.+++.+....+ ..+... +....+....++.+.++. .
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~-----V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~ 157 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNR-----VCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNA 157 (319)
T ss_pred eeeeccCCCCCcccccccCCc-----eEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEee
Confidence 334444444443344444444 778999999999988762211 111111 111233334455444432 2
Q ss_pred CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEECCCCeEEE-EeecCCCCCceeeEEE
Q 024185 111 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRC-GFSLEPSPNTNTEATF 188 (271)
Q Consensus 111 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~v~~~~~ 188 (271)
-+..++|+++..+........ ...|.+++-+|. .+.++.|+.||.+.+||.++..... .+..|..+ +..+.|
T Consensus 158 ~d~~~a~~~~p~~t~~~~~~~----~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~--i~eV~F 231 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIPSKKA----LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE--IWEVHF 231 (319)
T ss_pred ccceeeecccccccccccccc----cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhh--hhheec
Confidence 346777777655431122222 234999999995 4566778889999999999875433 35667665 888999
Q ss_pred CCC-CCEEEEecCCCcEEEEEcCC
Q 024185 189 TPD-GQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 189 ~~~-~~~l~~~~~dg~i~iwd~~~ 211 (271)
+|. +..|+++++||.+.-||..+
T Consensus 232 Hpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 232 HPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cCCCchheeEecCCCcEEEEcCCC
Confidence 985 67899999999999999763
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.8e-08 Score=83.14 Aligned_cols=171 Identities=10% Similarity=0.069 Sum_probs=122.1
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF 144 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (271)
|+-|+.+|.+++.+... .. .+.-.|... ..+|.++++|+.||.|.|-.+-+.+. .....+ ..++.++++
T Consensus 52 ~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~--~~~~df---~rpiksial 120 (846)
T KOG2066|consen 52 FALGTHRGAVYLTTCQG-NP-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDE--ITQYDF---KRPIKSIAL 120 (846)
T ss_pred eeeccccceEEEEecCC-cc-ccccccccc----ccCCceEEEecCCCcEEEeeccCCcc--ceeEec---CCcceeEEe
Confidence 67888899999988743 32 222222211 66899999999999999999888775 223332 368999999
Q ss_pred cCC-----CcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec
Q 024185 145 SND-----GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 145 s~~-----~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 219 (271)
+|+ .+.+++|+..| +.++.-+--........+...+.|.++.|. |+++|.++.+| |++||+.+++.+..++
T Consensus 121 ~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~ 196 (846)
T KOG2066|consen 121 HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIP 196 (846)
T ss_pred ccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccC
Confidence 998 56789999888 888764322222223345555679999995 77999999887 9999999988887765
Q ss_pred CCcce------eEEEEEecCCcEEEEeCCeEEEEcCC
Q 024185 220 GNIGV------VACLKWAPRRAMFVAASSVLSFWIPN 250 (271)
Q Consensus 220 ~~~~~------v~~~~~s~~~~~l~~~~~~v~iw~~~ 250 (271)
..... -..+.|.++.++++--+.+|+|..++
T Consensus 197 ~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 197 PPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred CCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 43322 24678887776666556789999887
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.2e-08 Score=79.64 Aligned_cols=195 Identities=12% Similarity=0.020 Sum_probs=136.0
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEec-----------CCeEEE
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAME-----------AGAIKL 116 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------d~~i~i 116 (271)
-+-+.|||.|.+ |++-...| |.+|--++-..++.+...++..+.|||+.+||++-+. ...+.|
T Consensus 213 etyv~wSP~GTY-----L~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTY-----LVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceE-----EEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 345889999999 55555555 7899777777778888888888999999999998642 257999
Q ss_pred EeCCCCCCCcceEEEe-cCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEE
Q 024185 117 FDSRSYDKGPFDTFLV-GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV 195 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 195 (271)
||+.++.. ...+.. ......-.-+.||.|++++|--.. ..|.+|+..+..++..-...- ..|....|+|.++.|
T Consensus 287 WDI~tG~l--krsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki--~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 287 WDIATGLL--KRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKI--SGIRDFSWSPTSNLL 361 (698)
T ss_pred EEccccch--hcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCC--ccccCcccCCCcceE
Confidence 99999886 222222 112222345789999999987666 479999977644433222222 238889999999988
Q ss_pred EEecC-----CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEe----------C--CeEEEEcCCCCC
Q 024185 196 VSGSG-----DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA----------S--SVLSFWIPNPSS 253 (271)
Q Consensus 196 ~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----------~--~~v~iw~~~~~~ 253 (271)
|.=.. -..+.+..+.+++.+++..-+.-.-..+-|-.+|.+|+.- + .++.|+.++...
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd 436 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD 436 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC
Confidence 85432 2367788888888887766555444567788888888753 1 346677766543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-08 Score=82.77 Aligned_cols=218 Identities=12% Similarity=0.091 Sum_probs=146.7
Q ss_pred eEEeeecceeeEEEEeecccee-----------eEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC
Q 024185 13 ALLFARQNIILILLESLCGIYQ-----------CMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML 81 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~ 81 (271)
.+..+..+|.+..+...+...+ ...-+.+++|++.|..+.|+.+.+. +-+...+|.|.+|-+-+
T Consensus 28 yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-----LTtSDt~GlIiVWmlyk 102 (1189)
T KOG2041|consen 28 YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-----LTTSDTSGLIIVWMLYK 102 (1189)
T ss_pred eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc-----ccccCCCceEEEEeeec
Confidence 3455666776666554332111 1133457899999999999999888 77889999999999877
Q ss_pred cceeEEE-e---cCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC
Q 024185 82 ASFQGIL-R---LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN 157 (271)
Q Consensus 82 ~~~~~~~-~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 157 (271)
|...... . ...+.+++|+.||..++....||.|.+=.++..+. --..+++ .....+.|++|.+.++.+-.+
T Consensus 103 gsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI---wgKeLkg--~~l~hv~ws~D~~~~Lf~~an 177 (1189)
T KOG2041|consen 103 GSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI---WGKELKG--QLLAHVLWSEDLEQALFKKAN 177 (1189)
T ss_pred ccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee---cchhcch--heccceeecccHHHHHhhhcC
Confidence 7533222 1 11245699999999999999999998887776542 1112222 234578899999999999899
Q ss_pred CeEEEEECCCC-------eEEEEeec--CCCCCceeeEEEC--------CCCCEEEEecCCCcEEEEEcCCceeEEEecC
Q 024185 158 NNIYVLDAYGG-------EKRCGFSL--EPSPNTNTEATFT--------PDGQYVVSGSGDGTLHAWNINTRNEVACWNG 220 (271)
Q Consensus 158 ~~i~~~d~~~~-------~~~~~~~~--~~~~~~v~~~~~~--------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 220 (271)
|.+.+||.... .+.-...+ ...+..+..+.|. ||...++.+-.+|.+.|..-.+......+..
T Consensus 178 ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt 257 (1189)
T KOG2041|consen 178 GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT 257 (1189)
T ss_pred CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec
Confidence 99999996432 11111111 0011124445553 5788999999999988875444333333432
Q ss_pred CcceeEEEEEecCCcEEEEeC
Q 024185 221 NIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 221 ~~~~v~~~~~s~~~~~l~~~~ 241 (271)
...+....|+|+|..|+.++
T Consensus 258 -gm~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 258 -GMKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred -ccEeecceecCCCcEEEEcc
Confidence 35688999999999999886
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.8e-09 Score=87.22 Aligned_cols=229 Identities=12% Similarity=0.105 Sum_probs=147.2
Q ss_pred EEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-eeEEEec-C
Q 024185 14 LLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-FQGILRL-R 91 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~-~ 91 (271)
-++..++-..+.++......+ ...-.+.+|..++..+-|.|...-+ +++++.|..+..||+++.. ++..+.. +
T Consensus 84 wiVsts~qkaiiwnlA~ss~~-aIef~lhghsraitd~n~~~q~pdV----latcsvdt~vh~wd~rSp~~p~ys~~~w~ 158 (1081)
T KOG0309|consen 84 WIVSTSNQKAIIWNLAKSSSN-AIEFVLHGHSRAITDINFNPQHPDV----LATCSVDTYVHAWDMRSPHRPFYSTSSWR 158 (1081)
T ss_pred eEEecCcchhhhhhhhcCCcc-ceEEEEecCccceeccccCCCCCcc----eeeccccccceeeeccCCCcceeeeeccc
Confidence 344444444444444333222 2233467889999999999988765 7799999999999998765 3443332 2
Q ss_pred -CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCCCe
Q 024185 92 -GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGE 169 (271)
Q Consensus 92 -~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~ 169 (271)
..+.++|+-....+.+.+....|.+||.+.+.. ....+++|...+..++|+. -...+.+.+.|++|+.||.....
T Consensus 159 s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~---pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 159 SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST---PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred ccCceeeecccCcchhhhccCCceEEEeccCCCc---ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 345599987555555556677899999998763 3556778989999999876 23457889999999999986543
Q ss_pred EEEEeecCCCCCceeeEEECCCCCEEEEe--cCCCcEEEE---------EcCC-ceeEEEecCCcceeEEEEEecCCc--
Q 024185 170 KRCGFSLEPSPNTNTEATFTPDGQYVVSG--SGDGTLHAW---------NINT-RNEVACWNGNIGVVACLKWAPRRA-- 235 (271)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw---------d~~~-~~~~~~~~~~~~~v~~~~~s~~~~-- 235 (271)
.......... ..+...++-|-|+-...- -.+..+.++ +..+ .++++++.||...|....|-..+.
T Consensus 236 ~e~~~~vtt~-~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~ 314 (1081)
T KOG0309|consen 236 TESKRTVTTN-FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECD 314 (1081)
T ss_pred cccceecccc-CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccccc
Confidence 2221111111 225556666655422211 112233333 3332 467889999998887766654222
Q ss_pred --------EEEEeC--CeEEEEcCCC
Q 024185 236 --------MFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 236 --------~l~~~~--~~v~iw~~~~ 251 (271)
.|++-| .++++|-+..
T Consensus 315 ~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 315 GDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCCCccceeEEEeecCCceEeeeccH
Confidence 688887 6799998765
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.8e-09 Score=79.75 Aligned_cols=166 Identities=11% Similarity=0.120 Sum_probs=116.8
Q ss_pred eEEEecCCcceEEEcCCCC-EEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEE
Q 024185 85 QGILRLRGRPTVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 163 (271)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~ 163 (271)
...++....+.++|+-+-. +-++.+.+..+-+-|++++-. ..+. ..+.|.++.|...++++..|..+|.|..+
T Consensus 206 ~~SlQi~~a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~-----qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~i 279 (425)
T KOG2695|consen 206 LCSLQIPKAWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-----QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVI 279 (425)
T ss_pred eeeecCCcchhhhhhhccceeeecccccceeEEEEeecccc-----cccc-cchhHHHHHhcccCCeeEecccCCcEEEE
Confidence 3445555555567775432 224445577888999988763 2222 45779999999989999999999999999
Q ss_pred ECCCC-----eEEEEeecCCCCCceeeEEECC-CCCEEEEecCCCcEEEEEcCCcee---EEEecCCcceeEEEE--Eec
Q 024185 164 DAYGG-----EKRCGFSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNE---VACWNGNIGVVACLK--WAP 232 (271)
Q Consensus 164 d~~~~-----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~--~s~ 232 (271)
|++.+ .+.+.+. |... ++++..-. ++++|.+.+.+|.|++||++--++ +.++.+|-..-.-+- ..+
T Consensus 280 DLR~rnqG~~~~a~rly-h~Ss--vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ 356 (425)
T KOG2695|consen 280 DLRCRNQGNGWCAQRLY-HDSS--VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE 356 (425)
T ss_pred EeeecccCCCcceEEEE-cCcc--hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc
Confidence 99865 2333333 4443 77776654 778999999999999999987666 888888854333332 344
Q ss_pred CCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 233 RRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 233 ~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
....+++++ .-.+||.++.+.++.+..
T Consensus 357 eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 357 EEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred ccceEEEccCeeEEEEEecccCceeeccC
Confidence 555677666 559999999988876654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-07 Score=71.06 Aligned_cols=177 Identities=14% Similarity=0.099 Sum_probs=112.7
Q ss_pred CceEEEEEecCcceeEEEecCC-cce-E-EEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC
Q 024185 71 ALEYGIFVLMLASFQGILRLRG-RPT-V-AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 147 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~~-~~~-~-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 147 (271)
+|.|..||..+|+.+....... ... + ...+++..+++++.++.++.||..+++. ...... ...+.... ..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~----~W~~~~-~~~~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKV----LWRFDL-PGPISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEE----EEEEEC-SSCGGSGE-EEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCE----EEEeec-ccccccee-eec
Confidence 6889999999999988886532 222 2 2344677788888999999999999886 333322 11111111 223
Q ss_pred CcEEEEEecCCeEEEEECCCCeEEEEe-ecCCCC-CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcce-
Q 024185 148 GKSMLLTTTNNNIYVLDAYGGEKRCGF-SLEPSP-NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV- 224 (271)
Q Consensus 148 ~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~- 224 (271)
+..+++++.++.+..+|..+|+.+... ...... ..........+++.++.+..++.|..+|+++|+.+.........
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 455777778889999999999998884 333111 11122333334778888888999999999999998877554322
Q ss_pred ---------eEEEEEecCCcEEEEeC-Ce-EEEEcCCCCCC
Q 024185 225 ---------VACLKWAPRRAMFVAAS-SV-LSFWIPNPSSN 254 (271)
Q Consensus 225 ---------v~~~~~s~~~~~l~~~~-~~-v~iw~~~~~~~ 254 (271)
+..-....++..+++.. +. +.+ |.++++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~ 195 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEK 195 (238)
T ss_dssp S--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEE
T ss_pred CcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCE
Confidence 11222223455555544 54 555 8888873
|
... |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.7e-09 Score=84.34 Aligned_cols=170 Identities=14% Similarity=0.145 Sum_probs=120.1
Q ss_pred eEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCC---CcceEEEecCCccceEEEEEcCCCcEEEEEecCCe
Q 024185 85 QGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN 159 (271)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 159 (271)
++.+.+|. +..++--.+.+-+++++.|.+|++|.++...- .....+++..|+.+|.++.|-.+-+++++ .||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 34455663 33433334566789999999999999864221 11246788899999999999998877664 5889
Q ss_pred EEEEECCCCeEEEEeecCCCCCceeeEEECC--CCCEEEEe-cCCCcEEEEEcCCceeEEEe-----cCCcceeEEEEEe
Q 024185 160 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTP--DGQYVVSG-SGDGTLHAWNINTRNEVACW-----NGNIGVVACLKWA 231 (271)
Q Consensus 160 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s 231 (271)
|.+||.--++.+.........+.+..+.--| +...+..| +...+++++|.+.++-..++ .+.++.+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999987777766443322222222233333 34455555 55789999999988776655 3455678999999
Q ss_pred cCCcEEEEe-C-CeEEEEcCCCCCCCc
Q 024185 232 PRRAMFVAA-S-SVLSFWIPNPSSNST 256 (271)
Q Consensus 232 ~~~~~l~~~-~-~~v~iw~~~~~~~~~ 256 (271)
|.|+.++.+ + |.+.+.|.++++.+.
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVIN 912 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceec
Confidence 999999887 3 999999999998765
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.5e-08 Score=81.60 Aligned_cols=200 Identities=13% Similarity=0.178 Sum_probs=136.2
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC-cceeEEEec---CCcceEEEcCCC--CEEEEEecCCeEEEEe
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML-ASFQGILRL---RGRPTVAFDQQG--LVFAVAMEAGAIKLFD 118 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~---~~~~~~~~~~~~--~~l~~~~~d~~i~i~d 118 (271)
.+.+..+.++|.|+- ++.++.-| +.+.|+.. +.+..-+.. -.+....|+|.. .+-++......-.+|+
T Consensus 24 ~~~~~a~si~p~grd-----i~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRD-----IVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN 97 (1081)
T ss_pred cCcccceeeccccch-----hhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhh
Confidence 345667889999998 67777777 44556653 333333322 234447887754 3444444455666898
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEECCCCeE-EEEeecCCCCCceeeEEECCCCCEEE
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEK-RCGFSLEPSPNTNTEATFTPDGQYVV 196 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~ 196 (271)
+..... ....+.+.+|...++.+.|+|. ...+++++.|..+..||+++... +..+..-.. ....+.|+.....+.
T Consensus 98 lA~ss~-~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s--~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 98 LAKSSS-NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS--AASQVKWNYKDPNVL 174 (1081)
T ss_pred hhcCCc-cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc--cCceeeecccCcchh
Confidence 864332 1236678899999999999995 45678899999999999987643 333332222 245589987655566
Q ss_pred EecCCCcEEEEEcCCc-eeEEEecCCcceeEEEEEecCC-cEEEEeC--CeEEEEcCCCCC
Q 024185 197 SGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 197 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~~v~iw~~~~~~ 253 (271)
+.+..+.|.+||.+.| .++..+++|-..|+.++|..-- ..+.+++ ++|+.||.+...
T Consensus 175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 6666778999999865 5678889999999999987632 2344444 999999987654
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-08 Score=74.84 Aligned_cols=150 Identities=14% Similarity=0.152 Sum_probs=95.2
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-----CCeEEEEECCCCeEE
Q 024185 97 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-----NNNIYVLDAYGGEKR 171 (271)
Q Consensus 97 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----d~~i~~~d~~~~~~~ 171 (271)
+.+--++.++++..||.+.+++.+.... ...+.......-.+.++...++.+.++.. -+..+.|+++..+.+
T Consensus 96 ~~s~~~t~V~~~~~dg~~~v~s~~~~~~---~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~ 172 (319)
T KOG4714|consen 96 ACTMTDNRVCIGYADGSLAVFSTDKDLA---LMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTL 172 (319)
T ss_pred cccccCCceEecCCCceEEEEechHHHh---hhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccc
Confidence 3344466799999999999999876221 11111111122223334444555544321 234566666543332
Q ss_pred EEeecCCCCCceeeEEECCCCC-EEEEecCCCcEEEEEcCCceeEE-EecCCcceeEEEEEec-CCcEEEEeC--CeEEE
Q 024185 172 CGFSLEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTRNEVA-CWNGNIGVVACLKWAP-RRAMFVAAS--SVLSF 246 (271)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~--~~v~i 246 (271)
..-.... ..+.+++-+|..+ .+++|+.||.+.+||.++...+. .+..|+.+++.+-|+| ++..|++++ |.+--
T Consensus 173 ~~~~~~~--~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 173 IPSKKAL--DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred ccccccc--ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 2211111 2388888898754 56678889999999999875443 4578999999999999 566788887 88999
Q ss_pred EcCCC
Q 024185 247 WIPNP 251 (271)
Q Consensus 247 w~~~~ 251 (271)
||..+
T Consensus 251 wdas~ 255 (319)
T KOG4714|consen 251 WDAST 255 (319)
T ss_pred EcCCC
Confidence 99875
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-08 Score=53.28 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=33.9
Q ss_pred EEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 129 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 129 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
...+.+|.+.|.+++|+|++++|++++.|+.|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 556789999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-08 Score=53.72 Aligned_cols=39 Identities=33% Similarity=0.684 Sum_probs=35.6
Q ss_pred CeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEE
Q 024185 168 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 208 (271)
++++.++..|... |.+++|+|+++++++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~--i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSS--INSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSS--EEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCc--EEEEEEecccccceeeCCCCEEEEEC
Confidence 3677888888877 99999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.8e-07 Score=75.65 Aligned_cols=178 Identities=13% Similarity=0.038 Sum_probs=113.8
Q ss_pred EecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcc-eEEEcCCCCEEEEEec---------------------
Q 024185 53 LSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRP-TVAFDQQGLVFAVAME--------------------- 110 (271)
Q Consensus 53 ~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~--------------------- 110 (271)
++|+|+.+. ...-..+.+.+.|.++.+...++...+.+ .++++|+|+++++.+.
T Consensus 200 lpnDGk~l~----~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 200 LPNDGKDLD----DPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cCCCCCEee----cccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 456776532 24455677888888887777766655433 3788888887777641
Q ss_pred -------------------CCeEEEEeCCC----CCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CCeEEEEECC
Q 024185 111 -------------------AGAIKLFDSRS----YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAY 166 (271)
Q Consensus 111 -------------------d~~i~i~d~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~ 166 (271)
++.|.+.|..+ +.. . ...+ .-......+.++|||+++++++. +.++.+.|+.
T Consensus 276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~--v-~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSA--L-TRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred EchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcc--e-EEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 23466666665 111 1 1111 12355778999999999988776 8999999998
Q ss_pred CCeE------------EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC----------ceeEEEecCCcce
Q 024185 167 GGEK------------RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT----------RNEVACWNGNIGV 224 (271)
Q Consensus 167 ~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~ 224 (271)
+.+. ......... ....+|+++|+...+-..|..|..|++.. ...+..+.-|-.+
T Consensus 352 k~k~~~~~~~~~~~~vvaevevGlG---PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~p 428 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPELGLG---PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQP 428 (635)
T ss_pred hhhhhhhccCCccceEEEeeccCCC---cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcc
Confidence 7542 333333222 34578999998777888899999999876 3345545433322
Q ss_pred -----eEEEEEecCCcEEEEeC
Q 024185 225 -----VACLKWAPRRAMFVAAS 241 (271)
Q Consensus 225 -----v~~~~~s~~~~~l~~~~ 241 (271)
..+=.-.|||++|++..
T Consensus 429 gh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 429 GHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred ceeeecCCCcCCCCCCEEEEcc
Confidence 11222367788887764
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-06 Score=70.41 Aligned_cols=112 Identities=16% Similarity=0.204 Sum_probs=79.6
Q ss_pred eEEEcCC-CCEEEEE----ecCCe----EEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEEC
Q 024185 95 TVAFDQQ-GLVFAVA----MEAGA----IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 95 ~~~~~~~-~~~l~~~----~~d~~----i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 165 (271)
.+.|+.. ...+.+. +.+|. -.+|+....+........+ ..+..+.+.+++|+.+.++.|+.||.|.+||.
T Consensus 210 ~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 210 DVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 3667653 3344443 33443 3567776665433333333 35678999999999999999999999999998
Q ss_pred CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
..+..... +. . ...+.++|+|+|..+++|+..|.+.+||+.-
T Consensus 289 ~~~~t~~~-ka-~--~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 289 TRGVTLLA-KA-E--FIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CCCeeeee-ee-c--ccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 76643322 22 1 2366799999999999999999999999864
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-06 Score=71.33 Aligned_cols=72 Identities=14% Similarity=0.101 Sum_probs=59.9
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE 169 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 169 (271)
.+.+++++|+...++.|..||.|.+||...+.. ... ...-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t----~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVT----LLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCee----eee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 467799999999999999999999999876543 211 234567889999999999999999999999986443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.1e-06 Score=70.88 Aligned_cols=225 Identities=10% Similarity=-0.030 Sum_probs=131.5
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
+.++++..++.+..++..+|...-. +............. ++. ++.+..++.+.-+|.++|+.+..+...
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~----~~~~~~~~ssP~v~-~~~------v~v~~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQ----TKVAGEALSRPVVS-DGL------VLVHTSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCccc----ccCCCceecCCEEE-CCE------EEEECCCCEEEEEEccCCCEeeeecCC
Confidence 4566666778888888877732211 22221111111122 333 345677899999999999988777543
Q ss_pred Cc-------ceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCcc-----ceEEEEEcC--CCcEEEEEecC
Q 024185 92 GR-------PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA-----EVCDIKFSN--DGKSMLLTTTN 157 (271)
Q Consensus 92 ~~-------~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~--~~~~l~~~~~d 157 (271)
.. ..... .+..++.++.+|.+..+|..+++... ........+ ....+.-+| .+..++.++.+
T Consensus 190 ~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W--~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~ 265 (394)
T PRK11138 190 VPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIW--QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN 265 (394)
T ss_pred CCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhh--eeccccCCCccchhcccccCCCcEEECCEEEEEEcC
Confidence 11 11111 13357777789999999999887511 111111000 011112233 24567777889
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc-ceeEEEEEecCCcE
Q 024185 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI-GVVACLKWAPRRAM 236 (271)
Q Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~ 236 (271)
|.+..+|..+|+.+.+..... ...+. .++..++.++.+|.+..+|..+++.+.....-. ....+.... ++.+
T Consensus 266 g~l~ald~~tG~~~W~~~~~~----~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g~l 338 (394)
T PRK11138 266 GNLVALDLRSGQIVWKREYGS----VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NGYL 338 (394)
T ss_pred CeEEEEECCCCCEEEeecCCC----ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-CCEE
Confidence 999999999998776543221 11122 245678888889999999999998766543211 112222222 4444
Q ss_pred EEEeC-CeEEEEcCCCCCCCcCC
Q 024185 237 FVAAS-SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 237 l~~~~-~~v~iw~~~~~~~~~~~ 258 (271)
++... |.+...|..+++.+...
T Consensus 339 ~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 339 VVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred EEEeCCCEEEEEECCCCCEEEEE
Confidence 43333 88999999998876543
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-06 Score=72.26 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=98.3
Q ss_pred cceEEEcCCCCEEEEE---ecC-CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CCe--EEEEEC
Q 024185 93 RPTVAFDQQGLVFAVA---MEA-GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNN--IYVLDA 165 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~---~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~--i~~~d~ 165 (271)
...-+|+|+++.++.. ... ..++++|+++++. ..... ..+.-...+|+|||++|+.... ||. |+++|+
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~--~~i~~---~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR--PVILN---FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCcc--ceeec---cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 3447899999876655 222 3699999998875 22222 2344556789999999887654 554 777788
Q ss_pred CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CC--cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
..++..+ +...... -....|+|||++++..+. .| .|.+++...+.. ..+....+.-....|+|||++++..+
T Consensus 270 ~~~~~~~-Lt~~~gi--~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 270 DGKNLPR-LTNGFGI--NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred CCCccee-cccCCcc--ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEec
Confidence 7776433 4333322 346899999999987765 44 466667665554 33322222223788999999988876
Q ss_pred --Ce--EEEEcCCCCC
Q 024185 242 --SV--LSFWIPNPSS 253 (271)
Q Consensus 242 --~~--v~iw~~~~~~ 253 (271)
|. |.+.|+.++.
T Consensus 346 ~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 346 SGGQWDIDKNDLASGG 361 (425)
T ss_pred cCCceeeEEeccCCCC
Confidence 43 6666665544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-06 Score=72.88 Aligned_cols=198 Identities=13% Similarity=0.083 Sum_probs=127.7
Q ss_pred EEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcc---eEEEcCCCCEEEEEecCC-----eEEEEeCCCCC
Q 024185 52 FLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRP---TVAFDQQGLVFAVAMEAG-----AIKLFDSRSYD 123 (271)
Q Consensus 52 ~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~ 123 (271)
++++.+.. ++.|+.+|.|.+.+- .-+.++.++.+... .+-...+.++|++.+.|+ .+++|+++..+
T Consensus 30 c~~s~~~~-----vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 30 CCSSSTGS-----VVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred EEcCCCce-----EEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 45666666 778999999877654 22333555554322 233333445777766554 58999987542
Q ss_pred C-C-cceE--EEecC-----CccceEEEEEcCCCcEEEEEecCCeEEEEECC--CCeEEEEeecCCCCCceeeEEECCCC
Q 024185 124 K-G-PFDT--FLVGG-----DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY--GGEKRCGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 124 ~-~-~~~~--~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~~ 192 (271)
. . |... ..+.. ...++.+++.+.+-+.++.|-.+|.|..+.-. ..+-.+....+.+..+|+.+.+..++
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 2 1 2211 12222 35678999999999999999999999998531 11112222334455679999999888
Q ss_pred CEEEEecCCCcEEEEEcCCcee-EEEecCCcceeEEEEEecCCc-EEEEeCCeEEEEcCCCCCCC
Q 024185 193 QYVVSGSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAPRRA-MFVAASSVLSFWIPNPSSNS 255 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~v~iw~~~~~~~~ 255 (271)
+.++....-..|.+|.+....+ ...+..|+.+..|-++++... ++++++.-+.+|+.+...+.
T Consensus 184 ~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 184 KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPC 248 (933)
T ss_pred ceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCccee
Confidence 8733333345799999974442 455788888999999998766 44444588999998765443
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.4e-06 Score=70.96 Aligned_cols=224 Identities=10% Similarity=0.077 Sum_probs=151.9
Q ss_pred ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchh-------hhhhhhhhccCceEEEEEecCcceeEEEecCC
Q 024185 20 NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLM-------IALCLVLLTTALEYGIFVLMLASFQGILRLRG 92 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 92 (271)
...+..++...- +.++.++.|...|..+.|.|-.... ....++++...|.|.+||...+..+..++.+.
T Consensus 34 hslV~VVDs~s~----q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~ 109 (1062)
T KOG1912|consen 34 HSLVSVVDSRSL----QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSN 109 (1062)
T ss_pred CceEEEEehhhh----hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCC
Confidence 555666665554 6677789999999999998743211 11127788889999999999988887777665
Q ss_pred cc--eEEEcC---CC-CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEEC
Q 024185 93 RP--TVAFDQ---QG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 93 ~~--~~~~~~---~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~ 165 (271)
.+ .++|-+ +. ..|++-.....+.+|+..++++ .+..........|+.+.| |.+.+...+..|.+.+-+.
T Consensus 110 ~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k----~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 110 DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK----FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred cchhheeeeeccCcchheeEEecCCcEEEEEEccCCce----eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 33 366654 44 3555556678999999999987 555544556778899999 7777777777777777664
Q ss_pred CC-------CeEEEEeecCCC-----------------C------CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeE
Q 024185 166 YG-------GEKRCGFSLEPS-----------------P------NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 215 (271)
Q Consensus 166 ~~-------~~~~~~~~~~~~-----------------~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 215 (271)
-. ++..+.-..|.. + .....++|+|.-+-++.......+.++|++-..++
T Consensus 186 l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l 265 (1062)
T KOG1912|consen 186 LGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCL 265 (1062)
T ss_pred cCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhcee
Confidence 21 222222222111 0 01223567887666666666778999999988888
Q ss_pred EEecCCcceeEEEEEecCCc--EEEEeC--CeEEEEcCCC
Q 024185 216 ACWNGNIGVVACLKWAPRRA--MFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 216 ~~~~~~~~~v~~~~~s~~~~--~l~~~~--~~v~iw~~~~ 251 (271)
....-..+.+.-+.|-|+++ .|.+.- |.+.+|-.+.
T Consensus 266 ~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 266 AVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 87766666667788888764 566664 8899997544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.7e-06 Score=73.05 Aligned_cols=189 Identities=12% Similarity=0.152 Sum_probs=119.8
Q ss_pred eecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEe----cC--
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVL----ML-- 81 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~----~~-- 81 (271)
+..+..++++.+.|.++..+..... ++....-.+.|.+++||||++. ++-.+.++++.+-.. -.
T Consensus 77 l~d~~~i~v~~~~G~iilvd~et~~-----~eivg~vd~GI~aaswS~Dee~-----l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 77 LADTNSICVITALGDIILVDPETLE-----LEIVGNVDNGISAASWSPDEEL-----LALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred ecccceEEEEecCCcEEEEcccccc-----eeeeeeccCceEEEeecCCCcE-----EEEEeCCcEEEEEeccccchhcc
Confidence 3445678888888998888655442 2224455678899999999998 556666666665432 00
Q ss_pred -----------------cceeEEEecC-----------------------CcceEEEcCCCCEEEEEe----cC-CeEEE
Q 024185 82 -----------------ASFQGILRLR-----------------------GRPTVAFDQQGLVFAVAM----EA-GAIKL 116 (271)
Q Consensus 82 -----------------~~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~~~----~d-~~i~i 116 (271)
|+....|++. ..+.+.|--||+++|+.. .+ ..|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 1111122211 123489999999999842 23 78999
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe---cCCeEEEEECCCCeEEEEee--cCCCCCceeeEEECCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT---TNNNIYVLDAYGGEKRCGFS--LEPSPNTNTEATFTPD 191 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~--~~~~~~~v~~~~~~~~ 191 (271)
||.+ +.+ ...-....+.-.+++|-|.|.++++-. .|+.|.+|. ++|-.-..|. ...+...+..++|+.+
T Consensus 227 ~drE-g~L----ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 227 YDRE-GAL----NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eccc-chh----hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCC
Confidence 9988 443 111112234456899999999988764 366799998 4453333222 1222223888999999
Q ss_pred CCEEEE---ecCCCcEEEEEcCCc
Q 024185 192 GQYVVS---GSGDGTLHAWNINTR 212 (271)
Q Consensus 192 ~~~l~~---~~~dg~i~iwd~~~~ 212 (271)
+..|+. ......|++|-+.+-
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCceeeeecccccceEEEEEecCe
Confidence 999987 344445999988763
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.8e-07 Score=69.18 Aligned_cols=213 Identities=12% Similarity=0.091 Sum_probs=123.9
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-CcceEEEcCCC-CEEEEEecCCeEEE
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-GRPTVAFDQQG-LVFAVAMEAGAIKL 116 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~-~~l~~~~~d~~i~i 116 (271)
+.+..+...|..++|||....+ +..++.+.+|+|.|+++...+..+..+ .+++++|.-|+ ++|+.|..+|.|.+
T Consensus 187 q~lp~~g~~IrdlafSp~~~GL----l~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGL----LGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hcccccchhhhhhccCccccce----eeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEE
Confidence 3567788889999999998854 458899999999999999888888766 46789998876 57788888999999
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEc------CCCcEEEEEecCCeEEEEECC--CCeEEEEeecCCCCCceeeEEE
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFS------NDGKSMLLTTTNNNIYVLDAY--GGEKRCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s------~~~~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~v~~~~~ 188 (271)
||++..+. ++..+.-.-...+|..++.- +.|.+++..+.+ +..|+.. .+.....+... .++.+.++++
T Consensus 263 yD~R~~~~-~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~pG~cismqy 338 (463)
T KOG1645|consen 263 YDMRQPEG-PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PPGICISMQY 338 (463)
T ss_pred EEccCCCc-hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-CCcceeeeee
Confidence 99987663 22222211122445544432 234444444433 4455542 12222222211 1234666677
Q ss_pred CCCCCEEEEecCCC-------cEE-EEEcCCceeEEEe-cCC-cce------eEEEEEecCCcEEEEeC---CeEEEEcC
Q 024185 189 TPDGQYVVSGSGDG-------TLH-AWNINTRNEVACW-NGN-IGV------VACLKWAPRRAMFVAAS---SVLSFWIP 249 (271)
Q Consensus 189 ~~~~~~l~~~~~dg-------~i~-iwd~~~~~~~~~~-~~~-~~~------v~~~~~s~~~~~l~~~~---~~v~iw~~ 249 (271)
++..+.++.....+ .+- --|-.+|.++... +++ .+. -..+.=.++.++++..+ +.+.+||+
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~ 418 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP 418 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence 76555555433220 011 1122233333221 112 110 01122244556666554 77999999
Q ss_pred CCCCCCcCCC
Q 024185 250 NPSSNSTDES 259 (271)
Q Consensus 250 ~~~~~~~~~~ 259 (271)
.+++......
T Consensus 419 ~s~evvQ~l~ 428 (463)
T KOG1645|consen 419 HSFEVVQTLA 428 (463)
T ss_pred chhheeeecc
Confidence 9988766554
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-05 Score=61.07 Aligned_cols=203 Identities=8% Similarity=0.088 Sum_probs=115.9
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC---cceEEEcCCCCEEEEEecCCeEE
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG---RPTVAFDQQGLVFAVAMEAGAIK 115 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~ 115 (271)
+.+.+-...++.+.+.|+.+.+ ++.....+.|...+. +|+.++.++..+ ...+++..++.++++.-.++.+.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tL----faV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTL----FAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLY 89 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEE----EEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred eECCCccCCccccEEcCCCCeE----EEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEE
Confidence 3466667779999999986654 557788888888886 578888776543 45589988887777666689999
Q ss_pred EEeCCCCCCCc----ceEEEec---CCccceEEEEEcCCCcEEEEEecCCeEEEEECCC---CeEEEEe-----e-cCCC
Q 024185 116 LFDSRSYDKGP----FDTFLVG---GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG---GEKRCGF-----S-LEPS 179 (271)
Q Consensus 116 i~d~~~~~~~~----~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~---~~~~~~~-----~-~~~~ 179 (271)
++++....... .....+. .+...+-.++|+|.++.|+++-......+|.++. ...+... . ....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 99884432110 1112222 2445689999999888888777766666666543 2111111 1 0111
Q ss_pred CCceeeEEECCC-CCEEEEecCCCcEEEEEcCCceeEEEecCCc---------ceeEEEEEecCCcEEEEeC-CeEEEE
Q 024185 180 PNTNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNEVACWNGNI---------GVVACLKWAPRRAMFVAAS-SVLSFW 247 (271)
Q Consensus 180 ~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~-~~v~iw 247 (271)
...+.+++++|. +++++....+..|..+| .+|+.+..+.-.. .....++|.++|++.+++- +..++|
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 134677899987 45666777788999999 5777766552211 2357899999998877776 655544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.1e-07 Score=76.45 Aligned_cols=138 Identities=12% Similarity=0.092 Sum_probs=106.9
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecC---------CeEEEEeCCCCCCCcceEEEecCC
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEA---------GAIKLFDSRSYDKGPFDTFLVGGD 135 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~ 135 (271)
+.+|...|+|.+-|.++.+.++++..|.....+|+-.|+.|++++.. .-|++||++..+. ...+.-+
T Consensus 190 lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra----l~PI~~~ 265 (1118)
T KOG1275|consen 190 LFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA----LSPIQFP 265 (1118)
T ss_pred EEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhc----cCCcccc
Confidence 67899999999999999999999999999899999999999998754 4578999988664 2222222
Q ss_pred ccceEEEEEcCC-CcEEEEEecCCeEEEEEC---CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEE
Q 024185 136 TAEVCDIKFSND-GKSMLLTTTNNNIYVLDA---YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 136 ~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 208 (271)
.+ -.-+.|.|. ...+++++..|...+-|. .+.. ...+..+.....+..++++++++.++.|..+|.|.+|-
T Consensus 266 ~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 266 YG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP-AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cC-chhhhhcccccceEEEEecccceeeccccccCCCc-cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 22 255678884 456888899999999983 3321 23333344444589999999999999999999999997
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.6e-07 Score=73.32 Aligned_cols=207 Identities=13% Similarity=0.155 Sum_probs=137.2
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC--c-ceeEEEecCC--cceEEEcCCCCEEEEEec-CCeEEEE
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML--A-SFQGILRLRG--RPTVAFDQQGLVFAVAME-AGAIKLF 117 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~--~-~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-d~~i~i~ 117 (271)
|...+..+..+. .++ +.+++.||.++.|-... + +.+..+..|- +..++.+-++..+.+.+. |..++++
T Consensus 8 hrd~i~hv~~tk-a~f-----iiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKF-----IIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ccceeeeEeeeh-hhe-----EEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 445555544443 334 66999999999997643 1 2233344443 344788889999999777 9999999
Q ss_pred eCCCCCCCcceEEEecCCccceEEEEEcCCC-c-EEEEE-ecCCeEEEEECCCCeE--EEEeecCCCCCceeeEEECCCC
Q 024185 118 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-K-SMLLT-TTNNNIYVLDAYGGEK--RCGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 118 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~-~l~~~-~~d~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~ 192 (271)
|+++... .....+..-++.+ +...+|.. . .++++ -.++.+.++|-....+ ...-..|..+ |..+.+.|-+
T Consensus 82 DvEn~Dm--inmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sP--V~~i~y~qa~ 156 (558)
T KOG0882|consen 82 DVENFDM--INMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSP--VKKIRYNQAG 156 (558)
T ss_pred Eeeccch--hhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCc--eEEEEeeccc
Confidence 9988665 2223332222323 23334421 1 33333 3478999999765432 2333445554 8899999999
Q ss_pred CEEEEecCCCcEEEEEcCC------ceeE---------EEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 193 QYVVSGSGDGTLHAWNINT------RNEV---------ACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~~~------~~~~---------~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
..+++....|.|.-|.... .+.. ..+........++.|+|+|..+.+-+ ..|++++..++++.
T Consensus 157 Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 157 DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 9999999999999998762 1111 12223445678999999999998887 77999999999988
Q ss_pred cCCCCC
Q 024185 256 TDESTD 261 (271)
Q Consensus 256 ~~~~~~ 261 (271)
.+.+..
T Consensus 237 qeiDE~ 242 (558)
T KOG0882|consen 237 QEIDEV 242 (558)
T ss_pred hhhhcc
Confidence 776543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.6e-05 Score=64.38 Aligned_cols=215 Identities=17% Similarity=0.084 Sum_probs=124.4
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceE-----EeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIR-----RGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
+.++++..++.+..++..+|...-. +....... ...... ++. ++.++.+|.+...|.++|+.+.
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~----~~~~~~~~~~~~~~sP~v~-~~~------v~~~~~~g~v~a~d~~~G~~~W 229 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWT----VNLDVPSLTLRGESAPATA-FGG------AIVGGDNGRVSAVLMEQGQLIW 229 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeee----ecCCCCcccccCCCCCEEE-CCE------EEEEcCCCEEEEEEccCChhhh
Confidence 4556666678888888877732211 21111000 011111 222 3356778889999999988765
Q ss_pred EEecCCc---c------eEEEcC--CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe
Q 024185 87 ILRLRGR---P------TVAFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155 (271)
Q Consensus 87 ~~~~~~~---~------~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 155 (271)
..+.... . .+.-+| .+..++.++.+|.+..+|..+++. .....- .....+. .++..++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~----~W~~~~--~~~~~~~--~~~~~vy~~~ 301 (394)
T PRK11138 230 QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI----VWKREY--GSVNDFA--VDGGRIYLVD 301 (394)
T ss_pred eeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE----EEeecC--CCccCcE--EECCEEEEEc
Confidence 5432110 0 011122 345677777899999999999875 333211 1111222 2456788888
Q ss_pred cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEE-EEEecCC
Q 024185 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVAC-LKWAPRR 234 (271)
Q Consensus 156 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~ 234 (271)
.+|.+..+|..+++.+......... ...+... .+.+++.++.+|.+...|..+|+.+...+-....+.+ ..+ .++
T Consensus 302 ~~g~l~ald~~tG~~~W~~~~~~~~-~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~ 377 (394)
T PRK11138 302 QNDRVYALDTRGGVELWSQSDLLHR-LLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADD 377 (394)
T ss_pred CCCeEEEEECCCCcEEEcccccCCC-cccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECC
Confidence 9999999999999876654321111 1122222 2457888899999999999999998877543332322 222 255
Q ss_pred cEEEEeC-CeEEEEcC
Q 024185 235 AMFVAAS-SVLSFWIP 249 (271)
Q Consensus 235 ~~l~~~~-~~v~iw~~ 249 (271)
++++... |.+..++.
T Consensus 378 ~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 378 KLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEeCCceEEEEeC
Confidence 5444443 77877654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-06 Score=73.17 Aligned_cols=147 Identities=15% Similarity=0.239 Sum_probs=108.0
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 172 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~ 172 (271)
+.|++++ +++|+.|+.+|.|++++....-. ..+ .|... .-+|.++++++.||++.+-.+-+.+...
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~~---~~~---~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNPK---TNF---DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCccc---ccc---ccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 3445553 67899999999999999875421 111 23322 6689999999999999999999888877
Q ss_pred EeecCCCCCceeeEEECCC-----CCEEEEecCCCcEEEEEcCC-c-eeEEEecCCcceeEEEEEecCCcEEEEeC-CeE
Q 024185 173 GFSLEPSPNTNTEATFTPD-----GQYVVSGSGDGTLHAWNINT-R-NEVACWNGNIGVVACLKWAPRRAMFVAAS-SVL 244 (271)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~-~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v 244 (271)
++..+.. +.+++++|+ .+.+++|+.-| +.++.-+= | +.-..+....++|.++.|. |+++|-++ -.+
T Consensus 108 ~~df~rp---iksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv 181 (846)
T KOG2066|consen 108 QYDFKRP---IKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGV 181 (846)
T ss_pred eEecCCc---ceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCc
Confidence 7665543 888999998 56889999988 77765321 1 1112345557899999996 88999998 559
Q ss_pred EEEcCCCCCCCcCCC
Q 024185 245 SFWIPNPSSNSTDES 259 (271)
Q Consensus 245 ~iw~~~~~~~~~~~~ 259 (271)
++||+.+++.+...+
T Consensus 182 ~vyd~~~~~~l~~i~ 196 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIP 196 (846)
T ss_pred EEEeccccceeeccC
Confidence 999999887665544
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.1e-05 Score=62.76 Aligned_cols=198 Identities=15% Similarity=0.151 Sum_probs=138.6
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEec---CCeEEEEeCCCCC
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAME---AGAIKLFDSRSYD 123 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~ 123 (271)
-..++.++.+... ++....+..|.+.|..+.......... ....++++|+++.++++.. ++.+.+.|..+.+
T Consensus 76 p~~i~v~~~~~~v----yv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 76 PAGVAVNPAGNKV----YVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccceeeCCCCCeE----EEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 3456778887754 346666889999998877777666544 4455999999998888755 6889999988877
Q ss_pred CCcceEEEecCCccceEEEEEcCCCcEEEEEe-cCCeEEEEECCCCeEEE-----EeecCCCCCceeeEEECCCCCEEEE
Q 024185 124 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRC-----GFSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 124 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
. ... ...-..+ ..++++|+|+.++... .++.+.+.|.......+ ....... ...+.++|+|+++..
T Consensus 152 ~--~~~--~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~---P~~i~v~~~g~~~yV 223 (381)
T COG3391 152 V--TAT--IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG---PAGIAVDPDGNRVYV 223 (381)
T ss_pred E--EEE--EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCC---CceEEECCCCCEEEE
Confidence 5 222 2222233 8899999999777665 68899999977665543 1222222 344899999997776
Q ss_pred ecCC---CcEEEEEcCCceeEEE-ecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCCCcC
Q 024185 198 GSGD---GTLHAWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 198 ~~~d---g~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~~~~ 257 (271)
.... +.+...|..++..... ..........+..+|+|..+.... +.+.+-|..+......
T Consensus 224 ~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 224 ANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred EeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 5543 5899999988877765 221111456788999999887774 6788888877665543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.7e-05 Score=66.20 Aligned_cols=202 Identities=11% Similarity=0.123 Sum_probs=123.0
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccce-EEeeEEecCCchhhhhhhhhhccCc-----eEEEEEecCc
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGI-RRGLFLSACLQLMIALCLVLLTTAL-----EYGIFVLMLA 82 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~ 82 (271)
+.+..++++..+|.+..++..-. ..+.|+.+... +..+....+..+ |++.+.|+ .+++|+++.-
T Consensus 33 s~~~~vvigt~~G~V~~Ln~s~~-----~~~~fqa~~~siv~~L~~~~~~~~-----L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNSSFQ-----LIRGFQAYEQSIVQFLYILNKQNF-----LFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred CCCceEEEeeccccEEEecccce-----eeehheecchhhhhHhhcccCceE-----EEEEeecCCCCceEEEEeccccc
Confidence 45567778888888887765332 22335555544 444444444345 44545443 5899998643
Q ss_pred ------cee---EEEe--cC----CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC
Q 024185 83 ------SFQ---GILR--LR----GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 147 (271)
Q Consensus 83 ------~~~---~~~~--~~----~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 147 (271)
+++ +.+. .+ ..++++.+.+-+.+++|-.+|.|..+.-.--+-...+..-......+|+.+.+..+
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 223 1222 11 24558999999999999999999998542111000112222234578999999999
Q ss_pred CcEEEEEecCCeEEEEECCCCeEEE-EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec-CCcc
Q 024185 148 GKSMLLTTTNNNIYVLDAYGGEKRC-GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIG 223 (271)
Q Consensus 148 ~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~ 223 (271)
++.++....-..|.+|.+....+.. .+..++ ....|..+++....+++++. ..+.+||....++-..+. +|..
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G--~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNG--ISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCC--ccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeE
Confidence 9874444445579999987444222 233333 44788888876664555554 369999988767666776 6654
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.9e-06 Score=72.62 Aligned_cols=138 Identities=11% Similarity=0.069 Sum_probs=96.1
Q ss_pred hhccCceEEEEEecCcceeEEEecCC-cceEEEcCCC-------CEEEEEecCCeEEEEeCCCCCCCcce-EEEecCCcc
Q 024185 67 LLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQG-------LVFAVAMEAGAIKLFDSRSYDKGPFD-TFLVGGDTA 137 (271)
Q Consensus 67 s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~-------~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~ 137 (271)
.......++-.|++.|+.+.....+. ++...+.|+. ..-+.|-.+..+..||++-...+... .........
T Consensus 499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 44456788889999999999998875 4467777753 34566777889999999864421111 011112345
Q ss_pred ceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEE-EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEc
Q 024185 138 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC-GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 209 (271)
Q Consensus 138 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 209 (271)
..+|++-+.+| +||+|+.+|.||+|| +.|+.-. .+.+-.. +|..++.+.||+|+++.+.. .+.+++.
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~--pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALPGLGD--PIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhcCCCCCC--CeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 67888888777 499999999999999 4444322 2444444 49999999999999877754 5666664
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.9e-06 Score=72.31 Aligned_cols=198 Identities=10% Similarity=0.095 Sum_probs=124.9
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE-EEecCCcceEEEcCCCCEEEEEecCCeEEEEeCC----
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG-ILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSR---- 120 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~---- 120 (271)
+.+.++.|..+... ++.+..+|.|.+-|.++..... ..-..++.+++|+||++.++..+..+++.+-+-.
T Consensus 69 ~~i~s~~fl~d~~~-----i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNS-----ICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred cceEEEEEecccce-----EEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence 46777777777766 5677888889888887765432 2234468889999999999999887777654321
Q ss_pred CCCC---------Ccc------eEEEecCC---------------------ccceEEEEEcCCCcEEEEEe-----cCCe
Q 024185 121 SYDK---------GPF------DTFLVGGD---------------------TAEVCDIKFSNDGKSMLLTT-----TNNN 159 (271)
Q Consensus 121 ~~~~---------~~~------~~~~~~~~---------------------~~~v~~~~~s~~~~~l~~~~-----~d~~ 159 (271)
..+. ++. ....+.|. .+.=+.+.|--||+++++.. ....
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 0000 000 00011110 01123588999999998843 2378
Q ss_pred EEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC---CCcEEEEEcCCcee----EEEecCCcceeEEEEEec
Q 024185 160 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG---DGTLHAWNINTRNE----VACWNGNIGVVACLKWAP 232 (271)
Q Consensus 160 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~ 232 (271)
+++||.+ |..-..-.... +.-.+++|-|.|..+++-.. |+.|.++.- +|-. ...++.....+..++|+.
T Consensus 224 irV~drE-g~Lns~se~~~--~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVE--GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred EEEeccc-chhhcccCccc--ccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecC
Confidence 9999965 44322211111 12345999999999987543 557888874 3332 222333444589999999
Q ss_pred CCcEEEEe---C-Ce-EEEEcCCCC
Q 024185 233 RRAMFVAA---S-SV-LSFWIPNPS 252 (271)
Q Consensus 233 ~~~~l~~~---~-~~-v~iw~~~~~ 252 (271)
++..|+.- . +. |++|-+.+.
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCCceeeeecccccceEEEEEecCe
Confidence 99999873 2 44 999987663
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.8e-06 Score=62.34 Aligned_cols=153 Identities=12% Similarity=0.237 Sum_probs=104.5
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc-----cceEEEEEcCC-CcEEEEEecCCeEEEEECC
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT-----AEVCDIKFSND-GKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~ 166 (271)
+++++++.|...++++. |-.|.+|+++-... .+....++.|. .-|++..|+|. ...+...+..|.|++-|++
T Consensus 175 iNSiS~NsD~et~lSaD-dLrINLWnl~i~D~-sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 175 INSISFNSDKETLLSAD-DLRINLWNLEIIDG-SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eeeeeecCchheeeecc-ceeeeeccccccCC-ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 56689998888877765 67899999875442 24444555554 34788899995 4567777889999999998
Q ss_pred CCeE------EEEeecCC--------CCCceeeEEECCCCCEEEEecCCCcEEEEEcCC-ceeEEEecCCc---------
Q 024185 167 GGEK------RCGFSLEP--------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNI--------- 222 (271)
Q Consensus 167 ~~~~------~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~--------- 222 (271)
.... +....... ....|..+.|+++|+++++-..- ++++||++. ..++++++-|.
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~ 331 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDV 331 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhh
Confidence 4321 11111110 01357889999999999887654 899999985 45677664442
Q ss_pred ---cee---EEEEEecCCcEEEEeC--CeEEEEc
Q 024185 223 ---GVV---ACLKWAPRRAMFVAAS--SVLSFWI 248 (271)
Q Consensus 223 ---~~v---~~~~~s~~~~~l~~~~--~~v~iw~ 248 (271)
..| ..+.||.|...+++|+ +..-+|-
T Consensus 332 YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 332 YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred hhccceeeeEEEEecCCcccccccccccceeeec
Confidence 122 4578898888888887 5555554
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.7e-06 Score=72.45 Aligned_cols=117 Identities=9% Similarity=0.099 Sum_probs=89.4
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe--cCCcce-EEEcCCCCEEEEEecCCeEEEEeCCC
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR--LRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRS 121 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~ 121 (271)
...+.--+++..+++ ++-|+..|.+++|+-..++....-. .+++.+ ..++++..++|+|+..|.|.++.++.
T Consensus 33 ~~~v~lTc~dst~~~-----l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 33 PARVKLTCVDATEEY-----LAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred cceEEEEEeecCCce-----EEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence 345555667777787 8889999999999987776543333 334444 78899999999999999999999887
Q ss_pred CCCCcceEEE---ecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC
Q 024185 122 YDKGPFDTFL---VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 122 ~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 167 (271)
... +..... -+.|...|++++|++|+..+++|...|+|.+-.+.+
T Consensus 108 ~~p-~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 108 ELP-RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cCC-CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 443 222222 223678899999999999999999999999888776
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.4e-08 Score=82.22 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=116.9
Q ss_pred EEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC--eEE
Q 024185 86 GILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN--NIY 161 (271)
Q Consensus 86 ~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~ 161 (271)
+.++.+ .-+|++|+.+.++|+.|+..|.|++|++.++.. .....+|..+++.+.=+.||..+++.+.-. -..
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~----e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM----EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc----cccccccccccccccccCCcceeeeeccccCchHH
Confidence 344444 356799999999999999999999999999987 667889999999999999999888765532 467
Q ss_pred EEECCC-CeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEe-c---CCcceeEEEEEecCCcE
Q 024185 162 VLDAYG-GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-N---GNIGVVACLKWAPRRAM 236 (271)
Q Consensus 162 ~~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~ 236 (271)
+|++.+ +...++|.. -.++.|+....+-+.|+......+||+.++.++.++ . +....=++..|+|+..+
T Consensus 1171 LW~~~s~~~~~Hsf~e------d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE------DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HhccccccCccccccc------cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 899854 455555543 334788877666666776678999999999887774 2 12223367889999887
Q ss_pred EEEeCCeEEEEcCCCCCCC
Q 024185 237 FVAASSVLSFWIPNPSSNS 255 (271)
Q Consensus 237 l~~~~~~v~iw~~~~~~~~ 255 (271)
++--+ .+||.+...-+
T Consensus 1245 IlndG---vLWDvR~~~aI 1260 (1516)
T KOG1832|consen 1245 ILNDG---VLWDVRIPEAI 1260 (1516)
T ss_pred EeeCc---eeeeeccHHHH
Confidence 77443 78888765433
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.3e-06 Score=70.08 Aligned_cols=150 Identities=16% Similarity=0.238 Sum_probs=110.8
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC------------cEEEEEecCCe
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG------------KSMLLTTTNNN 159 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~~~~~d~~ 159 (271)
+..++.|+|.| +||.|+ ...|.+.|..+.+. ...+.-|...|+.+.|.|.. -.||++...|.
T Consensus 17 N~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~----iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQL----IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred cccccccCccc-eEEEec-CceEEEEehhhhhh----hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 45568999877 466666 46788999988776 55667788999999998832 14566677899
Q ss_pred EEEEECCCCeEEEEeecCCCCCceeeEEECC---CC-CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEec-CC
Q 024185 160 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTP---DG-QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP-RR 234 (271)
Q Consensus 160 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~ 234 (271)
|.+||...+..+..+..+..+ +..++|-| ++ ..|+.-.....+.+|+..+|+.............++.+.| |.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~--~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~ 168 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDS--VQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS 168 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcc--hhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc
Confidence 999999988877777766665 77788854 34 4666667778999999999999988876666677888888 44
Q ss_pred cEE-EEeC-CeEEEEcC
Q 024185 235 AMF-VAAS-SVLSFWIP 249 (271)
Q Consensus 235 ~~l-~~~~-~~v~iw~~ 249 (271)
+.+ +.++ |-+.+-+.
T Consensus 169 rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 169 RHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred ceEEEEccCceEEEEec
Confidence 444 4444 55555443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.6e-05 Score=58.07 Aligned_cols=185 Identities=13% Similarity=0.123 Sum_probs=107.4
Q ss_pred ceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEE--EecCCccc-eEEEEEcCCC
Q 024185 72 LEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF--LVGGDTAE-VCDIKFSNDG 148 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~-v~~~~~s~~~ 148 (271)
..|.+-|+..++.+..+...+...+--+++ +.+.+-+.||.+.-..+...... .... .+.....+ +..-++...+
T Consensus 118 ~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~-~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTPGCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKE-AQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGTSEEEEEEEET-TEEEEEETTSCEEEEEETSTSSE-EEEEEEESSTTTS-B-S--EEETTT
T ss_pred CeEEEEECCCCceeeeecCCCEEEEEecCC-CceEEEecCCceEEEEECCCCCE-eEeeccccCCCCcccccccceECCC
Confidence 345555556666666666665333222222 34667777999888888743321 1111 11111222 2344556666
Q ss_pred cEEEEEecCCeEEEEECCCCeEE--EEeecCC--------CCCceeeEEECCCCCEEEEecC---CC-------cEEEEE
Q 024185 149 KSMLLTTTNNNIYVLDAYGGEKR--CGFSLEP--------SPNTNTEATFTPDGQYVVSGSG---DG-------TLHAWN 208 (271)
Q Consensus 149 ~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~---dg-------~i~iwd 208 (271)
..++..+.+|.|+-.|+...... ..+.... .++.-.-+++++..+.|+.--. ++ .|.++|
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 66777888999999998765432 2222110 1122333788877666654321 11 588999
Q ss_pred cCCceeEEEecCCcceeEEEEEecCCc-EEEEeC---CeEEEEcCCCCCCCcCCC
Q 024185 209 INTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS---SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~---~~v~iw~~~~~~~~~~~~ 259 (271)
+.+++.+.+++. ..++.+++.+.+.+ +|++.+ +.+.+||..+++.....+
T Consensus 276 ~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 276 LKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 999999999873 34678999999766 665432 789999999998876554
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.5e-08 Score=79.26 Aligned_cols=197 Identities=14% Similarity=0.164 Sum_probs=124.9
Q ss_pred ceEEeeEEecCCc-hhhhhhhhhhccCceEEEEEecCccee--EEEecCCc--ceEEEcC-CCCEEEEEe----cCCeEE
Q 024185 46 GIRRGLFLSACLQ-LMIALCLVLLTTALEYGIFVLMLASFQ--GILRLRGR--PTVAFDQ-QGLVFAVAM----EAGAIK 115 (271)
Q Consensus 46 ~~v~~~~~s~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~--~~~~~~~-~~~~l~~~~----~d~~i~ 115 (271)
..+.|++..-+.+ .+ ++.|..+|.|.+-..+...-- ...+++.. ++++|++ |.+.||+|- .|..+.
T Consensus 57 qy~kcva~~y~~d~cI----lavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCI----LAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCceeehhhcCCchhh----hhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 3456666554443 22 678899999999877654322 12233333 4489987 567788873 356899
Q ss_pred EEeCCCCCCCcceEEEecC-CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe-EEEEeecCCCCCceeeEEECC-CC
Q 024185 116 LFDSRSYDKGPFDTFLVGG-DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTP-DG 192 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~ 192 (271)
|||+.+.-..|.....+.+ ......+++|-.+.+++++|.....++++|++... ....+. .. .+..+..+| .+
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn--Tk--~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN--TK--YVQGITVDPFSP 208 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh--hh--hcccceecCCCC
Confidence 9999876333333333333 33456688899899999999989899999998332 112222 11 255577788 67
Q ss_pred CEEEEecCCCcEEEEE-cCCce-eEEEecCCc----ceeEEEEEecCCc-EEEEeC---CeEEEEcCCC
Q 024185 193 QYVVSGSGDGTLHAWN-INTRN-EVACWNGNI----GVVACLKWAPRRA-MFVAAS---SVLSFWIPNP 251 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd-~~~~~-~~~~~~~~~----~~v~~~~~s~~~~-~l~~~~---~~v~iw~~~~ 251 (271)
+|+++-. ||.|.+|| .++-+ ++..+.... ..+..++|.|... ++++.. ++|+++|+..
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 7776655 89999999 43322 222222111 2488999999654 455554 7899999854
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00042 Score=58.89 Aligned_cols=230 Identities=14% Similarity=0.137 Sum_probs=131.2
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccc------eEEeeEEecCCchhhhhh---hhhhccCceEEEEEecCc
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKG------IRRGLFLSACLQLMIALC---LVLLTTALEYGIFVLMLA 82 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~s~~~~~~~~~~---l~s~~~dg~i~iwd~~~~ 82 (271)
+.++++..++.+..++..++...-. +..... ......+.. +..++... +..++.+|.+..+|.++|
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~----~~~~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWK----FGNNDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeee----ecCCCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCC
Confidence 5667777788889998887732211 222111 011111211 22110000 001135788999999999
Q ss_pred ceeEEEecCC----------------------c-ceEEEcCCCCEEEEEecCC------------------eEEEEeCCC
Q 024185 83 SFQGILRLRG----------------------R-PTVAFDQQGLVFAVAMEAG------------------AIKLFDSRS 121 (271)
Q Consensus 83 ~~~~~~~~~~----------------------~-~~~~~~~~~~~l~~~~~d~------------------~i~i~d~~~ 121 (271)
+.+..++... + ...++.+.+..++.++.++ .+..+|.++
T Consensus 186 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 186 KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 9887765421 0 1244555567788887665 799999999
Q ss_pred CCCCcceEEEec--CCcc----ceEEEEEc----CCCc---EEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEE
Q 024185 122 YDKGPFDTFLVG--GDTA----EVCDIKFS----NDGK---SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 122 ~~~~~~~~~~~~--~~~~----~v~~~~~s----~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~ 188 (271)
++. ..... .|.. ......+. -++. .++.++.+|.+...|.++|+.+......... +..
T Consensus 266 G~~----~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~-----~~~ 336 (488)
T cd00216 266 GKV----KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQP-----MAY 336 (488)
T ss_pred CCE----EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccc-----ccc
Confidence 986 44322 1210 00001111 1333 5778888999999999999988776532111 333
Q ss_pred CCCCCEEEEe------------------cCCCcEEEEEcCCceeEEEecCCc--------cee--EEEEEecCCcEEEEe
Q 024185 189 TPDGQYVVSG------------------SGDGTLHAWNINTRNEVACWNGNI--------GVV--ACLKWAPRRAMFVAA 240 (271)
Q Consensus 189 ~~~~~~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~--------~~v--~~~~~s~~~~~l~~~ 240 (271)
+| ..++.+ ..+|.+.-.|+.+|+.+-+..... .+. ..+. -.+..++.+
T Consensus 337 ~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g 412 (488)
T cd00216 337 DP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAG 412 (488)
T ss_pred CC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEE
Confidence 44 223322 236789999999999887765321 111 1122 234566666
Q ss_pred C--CeEEEEcCCCCCCCcCCC
Q 024185 241 S--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 241 ~--~~v~iw~~~~~~~~~~~~ 259 (271)
+ |.++.+|.++++.+-..+
T Consensus 413 ~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 413 AADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CCCCeEEEEECCCCceeeEEE
Confidence 5 889999999998765443
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.7e-05 Score=65.65 Aligned_cols=140 Identities=11% Similarity=0.141 Sum_probs=83.1
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 172 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~ 172 (271)
...+.++|+|+++++++ +|.-.+|.....+ ... .+....+.|.+.++ +|+-....+|.++.--+.+...
T Consensus 35 p~~ls~npngr~v~V~g-~geY~iyt~~~~r-----~k~----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCG-DGEYEIYTALAWR-----NKA----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SEEEE-TTSSEEEEEE-TTEEEEEETTTTE-----EEE----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-
T ss_pred CeeEEECCCCCEEEEEc-CCEEEEEEccCCc-----ccc----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccce
Confidence 35599999999998855 7888888843322 211 25567789999655 6666668889997422222222
Q ss_pred EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCC
Q 024185 173 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP 251 (271)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~ 251 (271)
.+..... +..+-. |..|+..+.+ .|.+||..+++.+.++... +|..+.|+++|.+++..+ ..+.+++.+.
T Consensus 104 ~i~~~~~---~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 104 SIKLPFS---VEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNL 174 (443)
T ss_dssp ----SS----EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred EEcCCcc---cceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence 3332211 333322 7777776654 8999999999999999743 389999999999999888 7788877654
Q ss_pred C
Q 024185 252 S 252 (271)
Q Consensus 252 ~ 252 (271)
.
T Consensus 175 ~ 175 (443)
T PF04053_consen 175 E 175 (443)
T ss_dssp H
T ss_pred h
Confidence 4
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.4e-06 Score=71.66 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=109.2
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 172 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~ 172 (271)
+..-+++..+++++.|+.-|.+++|+...++. ......+..+.+..+..|++..++|+|+..|.|.++-+....+..
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~---~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM---RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhh---hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 33366777899999999999999999888774 222333345667777889999999999999999999886643221
Q ss_pred E---eecC-CCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc----eeEEEecCCcceeEEEEEecCCcEEEEeCCeE
Q 024185 173 G---FSLE-PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR----NEVACWNGNIGVVACLKWAPRRAMFVAASSVL 244 (271)
Q Consensus 173 ~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~v 244 (271)
. -..+ .+...|++++|++|+..+++|...|.|..-.+.+. -..+.+..-.+.|-.+... ++.+|++..-.-
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~r~ 191 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLTRC 191 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhhhh
Confidence 1 1111 12456999999999999999999999998888762 1122333345677777765 455555554444
Q ss_pred EEEcCCCCC
Q 024185 245 SFWIPNPSS 253 (271)
Q Consensus 245 ~iw~~~~~~ 253 (271)
.+++++.++
T Consensus 192 ~Lc~tE~et 200 (726)
T KOG3621|consen 192 ILCQTEAET 200 (726)
T ss_pred heeecchhH
Confidence 556655544
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.3e-05 Score=64.74 Aligned_cols=182 Identities=13% Similarity=0.120 Sum_probs=99.9
Q ss_pred ceEEeeEEecCCchhhhhhhhh---hccCc--eEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecC---------
Q 024185 46 GIRRGLFLSACLQLMIALCLVL---LTTAL--EYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEA--------- 111 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s---~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------- 111 (271)
..+...+++|+|+.+++ ... ...|. .+.+++. .+.....+.+.......|+|||+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~--v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAA--VVTLGRGAPDPASSLWVGPL-GGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEE--EEeecCCCCCcceEEEEEeC-CCcceeeecCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 45677899999998544 221 11233 4444454 3333333455556669999999877776532
Q ss_pred ---CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEE---EECCCCeE-E---EEeecCCCCC
Q 024185 112 ---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV---LDAYGGEK-R---CGFSLEPSPN 181 (271)
Q Consensus 112 ---~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~---~d~~~~~~-~---~~~~~~~~~~ 181 (271)
+.+.+.++..++. .. ...+.|..+.|||||+.++... +++|.+ -....|+. + +.+.. ....
T Consensus 427 ~~~gql~~~~vd~ge~----~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~-~l~~ 497 (591)
T PRK13616 427 PATGQLARTPVDASAV----AS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGP-GLGD 497 (591)
T ss_pred CCCceEEEEeccCchh----hh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeec-ccCC
Confidence 2333334433332 10 2245799999999999998766 577777 44344531 1 11111 1112
Q ss_pred ceeeEEECCCCCEEEEecCCCcEEEEEcCC-ceeEEEecC--CcceeEEEEEecCCcEEEEeC
Q 024185 182 TNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNG--NIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 182 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~ 241 (271)
.+.++.|.+++.++ .+..++.-.+|.+.- |.....+.. ....+..++=+++ .++++.+
T Consensus 498 ~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~iyv~~~ 558 (591)
T PRK13616 498 TAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TVYVTDA 558 (591)
T ss_pred ccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eEEEEcC
Confidence 25779999999855 555444444554431 222222232 2455677776663 3444433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.9e-05 Score=63.55 Aligned_cols=178 Identities=12% Similarity=0.129 Sum_probs=94.9
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEe-CCC
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFD-SRS 121 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d-~~~ 121 (271)
...-....+.++|+|+.+ +. +.||...++.....+... .+ ......|.++++ +|+-..++.|.++. .+.
T Consensus 30 ~~~~~p~~ls~npngr~v-----~V-~g~geY~iyt~~~~r~k~--~G-~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFV-----LV-CGDGEYEIYTALAWRNKA--FG-SGLSFVWSSRNR-YAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp E-SS--SEEEE-TTSSEE-----EE-EETTEEEEEETTTTEEEE--EE-E-SEEEE-TSSE-EEEE-TTS-EEEEETTEE
T ss_pred CCCcCCeeEEECCCCCEE-----EE-EcCCEEEEEEccCCcccc--cC-ceeEEEEecCcc-EEEEECCCeEEEEEcCcc
Confidence 334445679999999973 33 778888888743333221 22 234478888555 67776688999963 332
Q ss_pred CCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC
Q 024185 122 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 201 (271)
Q Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 201 (271)
.. .....+. ..+..+-. |..|+..+.+ .|.+||..+++.++++.... |..+.|+++|++++..+.+
T Consensus 100 ~~---~k~i~~~---~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~----vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 100 EV---VKSIKLP---FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA----VKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp -T---T-----S---S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-----EEEEE-TTSSEEEEE-S-
T ss_pred cc---ceEEcCC---cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC----CcEEEEECCCCEEEEEeCC
Confidence 22 1122222 12333322 8877777655 89999999999999887442 7889999999999988866
Q ss_pred CcEEEEEcCCc-----------eeEEEecCCcceeEEEEEecCCcEEEEeCCeEEE
Q 024185 202 GTLHAWNINTR-----------NEVACWNGNIGVVACLKWAPRRAMFVAASSVLSF 246 (271)
Q Consensus 202 g~i~iwd~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~v~i 246 (271)
.+.+++.... .....+..-...|.+..|..| -++.+..+.++.
T Consensus 166 -~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~~lkY 219 (443)
T PF04053_consen 166 -SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSNHLKY 219 (443)
T ss_dssp -SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TTEEEE
T ss_pred -eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCCeEEE
Confidence 6777765433 023333222456788888766 444444444444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00055 Score=54.05 Aligned_cols=205 Identities=16% Similarity=0.148 Sum_probs=116.8
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec-------
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL------- 90 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------- 90 (271)
..++.++.++...+. .+.+...............+.. .++ +..+.+++.+++..+..+..
T Consensus 44 I~~~~i~r~~~~~g~-----~~~~~~p~~~~~~~~~d~~g~L-------v~~-~~g~~~~~~~~~~~~t~~~~~~~~~~~ 110 (307)
T COG3386 44 ILGGRIHRLDPETGK-----KRVFPSPGGFSSGALIDAGGRL-------IAC-EHGVRLLDPDTGGKITLLAEPEDGLPL 110 (307)
T ss_pred CCCCeEEEecCCcCc-----eEEEECCCCcccceeecCCCeE-------EEE-ccccEEEeccCCceeEEeccccCCCCc
Confidence 345666666665441 1223333333333444444443 222 23356677766655333311
Q ss_pred CCcceEEEcCCCCEEEEEec-----------CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CC
Q 024185 91 RGRPTVAFDQQGLVFAVAME-----------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NN 158 (271)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~ 158 (271)
...+-....|+|.+.+.... -|.++.+|. .+.. ...+..+-..-+.++||||++.|+.+.. .+
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~----~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGV----VRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCE----EEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 12344788899886555433 134555554 2332 3333444455678999999988887755 57
Q ss_pred eEEEEECCC--Ce---EEEEeecCCCCCceeeEEECCCCCEEEEecCCC-cEEEEEcCCceeEEEecCCcceeEEEEEec
Q 024185 159 NIYVLDAYG--GE---KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG-TLHAWNINTRNEVACWNGNIGVVACLKWAP 232 (271)
Q Consensus 159 ~i~~~d~~~--~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 232 (271)
.|+-|++.. +. ....+.....++..-.++...+|++.+++..+| .|.+|+.. ++.+..+.-+...+++++|--
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 888887752 11 111111111223344578888998876555554 89999987 999988877767788888854
Q ss_pred -CCcEEEEeC
Q 024185 233 -RRAMFVAAS 241 (271)
Q Consensus 233 -~~~~l~~~~ 241 (271)
+.+.|...+
T Consensus 265 ~~~~~L~iTs 274 (307)
T COG3386 265 PDLNTLYITS 274 (307)
T ss_pred CCcCEEEEEe
Confidence 445444443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00011 Score=62.41 Aligned_cols=184 Identities=13% Similarity=0.026 Sum_probs=114.2
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCC---------------c-----------------ceEEEc---CCCCEEEEEe
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRG---------------R-----------------PTVAFD---QQGLVFAVAM 109 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------~-----------------~~~~~~---~~~~~l~~~~ 109 (271)
|.||+..|.++++-+.+++.+..+..-. + +.+++. -||++|+.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 7899999999999998887666542110 0 011221 1567777664
Q ss_pred c-CCeEEEEeCCCCCCCcceEEEecC-------------CccceE-----EEEEcCCCcEEEEEec-CCeEEEEECCCCe
Q 024185 110 E-AGAIKLFDSRSYDKGPFDTFLVGG-------------DTAEVC-----DIKFSNDGKSMLLTTT-NNNIYVLDAYGGE 169 (271)
Q Consensus 110 ~-d~~i~i~d~~~~~~~~~~~~~~~~-------------~~~~v~-----~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~ 169 (271)
. +..|...++...+.. ++..+.. ++..|. .+=++|||+.+...+. .+.+.+.|..+.+
T Consensus 149 k~n~Rvari~l~~~~~~--~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etme 226 (635)
T PRK02888 149 KANTRVARIRLDVMKCD--KITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETME 226 (635)
T ss_pred CCCcceEEEECccEeec--eeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccce
Confidence 3 456666666554431 1111111 112222 1234567765543332 5678888888887
Q ss_pred EEEEeecCCCCCceeeEEECCCCCEEEEecC----------------------------------------CCcEEEEEc
Q 024185 170 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSG----------------------------------------DGTLHAWNI 209 (271)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------------------------------------dg~i~iwd~ 209 (271)
...++..... ...++++|+|+++++.+. ++.|.+.|.
T Consensus 227 V~~qV~Vdgn---pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~ 303 (635)
T PRK02888 227 VAWQVMVDGN---LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDG 303 (635)
T ss_pred EEEEEEeCCC---cccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEEC
Confidence 7777665544 344788899988877751 234777777
Q ss_pred CC-----ceeEEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCC
Q 024185 210 NT-----RNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSN 254 (271)
Q Consensus 210 ~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~ 254 (271)
++ .+.+..+... .....+.++|||+++++++ .++.|.|+++.+.
T Consensus 304 ~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 304 RKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred CccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 76 3445555433 3457899999999999887 7899999988664
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-06 Score=74.89 Aligned_cols=107 Identities=10% Similarity=0.185 Sum_probs=87.4
Q ss_pred EEEEEcCCCcEEEEEec----CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeE
Q 024185 140 CDIKFSNDGKSMLLTTT----NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 215 (271)
Q Consensus 140 ~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 215 (271)
+-..|+|...++++++. .|.|.||- .+|++.+..... ..+++++|+|..-.|+.|-.-|.+.+|...+.+.-
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P---~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP---VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc---eehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 44579999999988764 68899984 677755444322 23677999999888888988999999998777666
Q ss_pred EEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 216 ACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 216 ~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
.....|..+|..+.|||+|..++++. |.+.+|...
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 66678999999999999999999998 999999886
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00011 Score=55.74 Aligned_cols=204 Identities=12% Similarity=0.106 Sum_probs=128.6
Q ss_pred EeeEEecCCchhhhhhhhhhccC-ceEEEEEecCcceeEEEecCCcce----EEEcCCCCEEEEEecC-----CeEEEEe
Q 024185 49 RGLFLSACLQLMIALCLVLLTTA-LEYGIFVLMLASFQGILRLRGRPT----VAFDQQGLVFAVAMEA-----GAIKLFD 118 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~d-----~~i~i~d 118 (271)
..+.++|....-++ -+-.- -...++|..+.+...++...+... =.|||||.+|++.-.| |.|-+||
T Consensus 71 Hgi~~~p~~~rava----fARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 71 HGIAFHPALPRAVA----FARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred CCeecCCCCcceEE----EEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 34667776655322 22222 345688998888777765443221 5789999999887433 6899999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec------------------CCeEEEEECCCCeEEEEeecC--C
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT------------------NNNIYVLDAYGGEKRCGFSLE--P 178 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------------d~~i~~~d~~~~~~~~~~~~~--~ 178 (271)
.+.+- ...-.+..|.-.-..+.|.+||+.++.+.. ..++.+.|..+|+.+.+.... .
T Consensus 147 ~r~~f---qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l 223 (366)
T COG3490 147 AREGF---QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL 223 (366)
T ss_pred ccccc---ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence 98533 234456677777889999999999887643 134666666677665543322 3
Q ss_pred CCCceeeEEECCCCCEEEEecCCCc-----EEEEEcCCceeEEEecC-------CcceeEEEEEecCCcEEEEeC---Ce
Q 024185 179 SPNTNTEATFTPDGQYVVSGSGDGT-----LHAWNINTRNEVACWNG-------NIGVVACLKWAPRRAMFVAAS---SV 243 (271)
Q Consensus 179 ~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~---~~ 243 (271)
....+..++..+||..++-+-..|. -.+=-...++.+.-+.. ....|-+++.+.+..+++..| +.
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~ 303 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR 303 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence 3345888899999886665433331 11111233444443322 123466788877666776666 66
Q ss_pred EEEEcCCCCCCCcCCC
Q 024185 244 LSFWIPNPSSNSTDES 259 (271)
Q Consensus 244 v~iw~~~~~~~~~~~~ 259 (271)
..+||..++....+..
T Consensus 304 ~vi~da~tG~vv~~a~ 319 (366)
T COG3490 304 AVIWDAATGAVVSEAA 319 (366)
T ss_pred EEEEEcCCCcEEeccc
Confidence 9999999998876654
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.7e-06 Score=68.26 Aligned_cols=93 Identities=12% Similarity=0.205 Sum_probs=77.4
Q ss_pred cceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCcee-eEEECCCCCEEEEecCCCcEEEEEcCCceeE
Q 024185 137 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT-EATFTPDGQYVVSGSGDGTLHAWNINTRNEV 215 (271)
Q Consensus 137 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 215 (271)
..+.-+.|+|.-..+|.+..+|.+-+..+. .+.+.++..+..+ ++ +++|.|||+.++.|-.||+|++.|+.++..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~--v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGEN--VTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCc--cceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 567889999999999999999999999887 7777888766665 44 9999999999999999999999999999888
Q ss_pred EEec-CCcceeEEEEEec
Q 024185 216 ACWN-GNIGVVACLKWAP 232 (271)
Q Consensus 216 ~~~~-~~~~~v~~~~~s~ 232 (271)
.... .....|.++-|+|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 7731 2345677777763
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00078 Score=56.15 Aligned_cols=197 Identities=12% Similarity=0.063 Sum_probs=110.3
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE-ecCCcceEEEcCCCCEEEEEecC-----------CeEE
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL-RLRGRPTVAFDQQGLVFAVAMEA-----------GAIK 115 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d-----------~~i~ 115 (271)
+....+||++++++...=..|+....++++|+++++.+... .......+.|.++++.|+....+ ..|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 34578899999865521123444467999999999765432 33323339999998877666432 2478
Q ss_pred EEeCCCCCCCcceEEEecCCccc--eEEEEEcCCCcEEEEEec---C-CeEEEEECCCC----eEEEEeecCCCCCceee
Q 024185 116 LFDSRSYDKGPFDTFLVGGDTAE--VCDIKFSNDGKSMLLTTT---N-NNIYVLDAYGG----EKRCGFSLEPSPNTNTE 185 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~---d-~~i~~~d~~~~----~~~~~~~~~~~~~~v~~ 185 (271)
.|++.+....- ...+...... ...+..++|+++++..+. + ..+.+.|+..+ .....+...... ....
T Consensus 206 ~~~~gt~~~~d--~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~-~~~~ 282 (414)
T PF02897_consen 206 RHKLGTPQSED--ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG-VEYY 282 (414)
T ss_dssp EEETTS-GGG---EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS--EEE
T ss_pred EEECCCChHhC--eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc-eEEE
Confidence 88887765411 2333332222 568889999999876543 3 45888888764 223333322222 1222
Q ss_pred EEECCCCCEEEEecC---CCcEEEEEcCCcee---EEEecCCcc--eeEEEEEecCCcEEEEeC-----CeEEEEcCC
Q 024185 186 ATFTPDGQYVVSGSG---DGTLHAWNINTRNE---VACWNGNIG--VVACLKWAPRRAMFVAAS-----SVLSFWIPN 250 (271)
Q Consensus 186 ~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~---~~~~~~~~~--~v~~~~~s~~~~~l~~~~-----~~v~iw~~~ 250 (271)
+.. ..+.+++.... ++.|.-.++.+... ...+..+.. .+..+.. .+.+|+... ..|+++++.
T Consensus 283 v~~-~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 283 VDH-HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEE-ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred EEc-cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 322 24445444433 46777778876552 324444544 4445444 455555442 459999998
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0001 Score=59.94 Aligned_cols=149 Identities=17% Similarity=0.246 Sum_probs=91.7
Q ss_pred cCCCCEEEEEe---------cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe
Q 024185 99 DQQGLVFAVAM---------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE 169 (271)
Q Consensus 99 ~~~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 169 (271)
|||+++++... ..+.+.+||+++++. ..+......+....|||+|+.++... ++.|.++++.+++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~-----~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~ 74 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI-----TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ 74 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE-----EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce-----EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCC
Confidence 68888777742 246799999998763 33333356789999999999998876 5789999988775
Q ss_pred EEEEeecCCCC----------------CceeeEEECCCCCEEEEecCC-C------------------------------
Q 024185 170 KRCGFSLEPSP----------------NTNTEATFTPDGQYVVSGSGD-G------------------------------ 202 (271)
Q Consensus 170 ~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~~~d-g------------------------------ 202 (271)
..+ +...... ..-..+-|||||++|+....| .
T Consensus 75 ~~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~ 153 (353)
T PF00930_consen 75 ETQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD 153 (353)
T ss_dssp EEE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS
T ss_pred eEE-eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC
Confidence 443 2221110 113458899999998854221 1
Q ss_pred -----cEEEEEcCCceeEE-E-e---cCCcceeEEEEEecCCcEEEEe--C-----CeEEEEcCCCCCC
Q 024185 203 -----TLHAWNINTRNEVA-C-W---NGNIGVVACLKWAPRRAMFVAA--S-----SVLSFWIPNPSSN 254 (271)
Q Consensus 203 -----~i~iwd~~~~~~~~-~-~---~~~~~~v~~~~~s~~~~~l~~~--~-----~~v~iw~~~~~~~ 254 (271)
.+.++|+.+++... . . .....-+..+.|+++++.|+.. + -.+.+.|..+++.
T Consensus 154 ~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~ 222 (353)
T PF00930_consen 154 PNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET 222 (353)
T ss_dssp ---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred cCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce
Confidence 24445555554321 1 1 1234567899999999844333 2 2377778877654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.6e-06 Score=67.94 Aligned_cols=92 Identities=12% Similarity=0.217 Sum_probs=73.4
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceE-EEEEcCCCcEEEEEecCCeEEEEECCCCeEE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC-DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 171 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~ 171 (271)
+..+.|+|.-..+|.+..+|.+.+...+ .+. ..++.-|...++ +++|.|||+.|++|-.||+|++.|..++..+
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~qR----lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLN-WQR----LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEec-cce----eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 4458999999999999999999999988 443 666665566666 9999999999999999999999999999877
Q ss_pred EEeecCCCCCceeeEEECC
Q 024185 172 CGFSLEPSPNTNTEATFTP 190 (271)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~~ 190 (271)
..+..... ..+.++.|+|
T Consensus 98 ~~~~~s~e-~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVE-TDISKGIWDR 115 (665)
T ss_pred eccccccc-cchheeeccc
Confidence 76422211 2377777764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.4e-06 Score=71.77 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=84.8
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCc
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP 126 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 126 (271)
-+-..|+|..+++++. -+|-...|.|.|| .++|++.....-+ .+.+++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus 18 sti~SWHPsePlfAVA-~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-- 93 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVA-SFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-- 93 (1416)
T ss_pred ccccccCCCCceeEEE-EecCCCCceEEEE-ecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee--
Confidence 3446788888873331 2234456788887 3466654433222 245599999999999998899999999988764
Q ss_pred ceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 127 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 127 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
......|+.++.-+.|||+|..++++..-|.+.+|...
T Consensus 94 --htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 --HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred --eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 44456799999999999999999999999999999875
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00012 Score=59.57 Aligned_cols=181 Identities=15% Similarity=0.166 Sum_probs=104.2
Q ss_pred ccCceEEEEEecCcceeEEEec-CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCC------------
Q 024185 69 TTALEYGIFVLMLASFQGILRL-RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD------------ 135 (271)
Q Consensus 69 ~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~------------ 135 (271)
+..+.+.++|+++++....... .......|+|+|+.++... ++.|++++..+++. ...+..+.
T Consensus 20 s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~---~~lT~dg~~~i~nG~~dwvy 95 (353)
T PF00930_consen 20 SFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE---TQLTTDGEPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE---EESES--TTTEEESB--HHH
T ss_pred ccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCe---EEeccccceeEEcCccceec
Confidence 3456789999999876555544 3456699999999999887 67899999876642 12222220
Q ss_pred ----ccceEEEEEcCCCcEEEEEecC-C-----------------------------------eEEEEECCCCeEEEE-e
Q 024185 136 ----TAEVCDIKFSNDGKSMLLTTTN-N-----------------------------------NIYVLDAYGGEKRCG-F 174 (271)
Q Consensus 136 ----~~~v~~~~~s~~~~~l~~~~~d-~-----------------------------------~i~~~d~~~~~~~~~-~ 174 (271)
-+.-..+-||||+++|+....| . .+.++|+.+++.... .
T Consensus 96 eEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~ 175 (353)
T PF00930_consen 96 EEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDP 175 (353)
T ss_dssp HHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE--
T ss_pred cccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeee
Confidence 1123567899999998876543 1 244455554443211 1
Q ss_pred e--cCCCCCceeeEEECCCCCEEEEe--cCC---CcEEEEEcCCceeEEEec-CCccee---EEEEEe-cCCcEEEEeC-
Q 024185 175 S--LEPSPNTNTEATFTPDGQYVVSG--SGD---GTLHAWNINTRNEVACWN-GNIGVV---ACLKWA-PRRAMFVAAS- 241 (271)
Q Consensus 175 ~--~~~~~~~v~~~~~~~~~~~l~~~--~~d---g~i~iwd~~~~~~~~~~~-~~~~~v---~~~~~s-~~~~~l~~~~- 241 (271)
. .......+..+.|.++++.++.. +.+ ..+.++|..+++...... ...++| ....|. +++..++..+
T Consensus 176 ~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~ 255 (353)
T PF00930_consen 176 PNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE 255 (353)
T ss_dssp -HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE
T ss_pred ccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE
Confidence 1 01222457788999999844433 322 247778887765533321 122222 355555 6666544443
Q ss_pred ----CeEEEEcCCCCC
Q 024185 242 ----SVLSFWIPNPSS 253 (271)
Q Consensus 242 ----~~v~iw~~~~~~ 253 (271)
..|.+++..++.
T Consensus 256 ~~G~~hly~~~~~~~~ 271 (353)
T PF00930_consen 256 RDGYRHLYLYDLDGGK 271 (353)
T ss_dssp TTSSEEEEEEETTSSE
T ss_pred cCCCcEEEEEcccccc
Confidence 447777777765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0011 Score=49.77 Aligned_cols=142 Identities=16% Similarity=0.166 Sum_probs=96.2
Q ss_pred EEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEe
Q 024185 96 VAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF 174 (271)
Q Consensus 96 ~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 174 (271)
+...+|. .+++.|+..+.+...|..+++. .+... -...+.+-+.- -|++++.|...|.+++.+..+|.....+
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~----~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f 89 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNL----IWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNF 89 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcE----Eeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeee
Confidence 3334444 5777888889999999998885 22210 11223322222 4667999999999999999999887777
Q ss_pred ecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEec-CCcEEEEe-CCeEE
Q 024185 175 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP-RRAMFVAA-SSVLS 245 (271)
Q Consensus 175 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~-~~~v~ 245 (271)
.....- -......+++..+..|+.|+..+..|.++..++...+...+.-.+.+..| ++.+.++. +|.+.
T Consensus 90 ~~~~~v--k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 90 VILETV--KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred eehhhh--ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence 654432 12356688999999999999999999999999988765544444555566 44433332 35443
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.6e-05 Score=64.86 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=94.6
Q ss_pred CCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCcc-ceEEEEEcCC-------CcEEEEEecCCeEEEEECCCCe--E
Q 024185 102 GLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTA-EVCDIKFSND-------GKSMLLTTTNNNIYVLDAYGGE--K 170 (271)
Q Consensus 102 ~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~-------~~~l~~~~~d~~i~~~d~~~~~--~ 170 (271)
.+.|+.- .....|+-.|++.++. +..+.+ |.. +|..+ .|+ ...-+.|-.+..+..||.|-.. .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKV--V~eW~~--~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKV--VEEWKV--HDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL 566 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcE--EEEeec--CCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCce
Confidence 3444433 4457899999999986 444443 332 34444 343 2345677778899999998632 2
Q ss_pred EEE-eecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEc
Q 024185 171 RCG-FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWI 248 (271)
Q Consensus 171 ~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~ 248 (271)
+.. ...........|++-+.+| ++|.|+.+|.|++||--..+....+++-+.+|.++..+.||+++++.+ ..+.+++
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred eeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 221 1111122347778877777 689999999999999433222334567788999999999999888777 6688888
Q ss_pred CC
Q 024185 249 PN 250 (271)
Q Consensus 249 ~~ 250 (271)
..
T Consensus 646 t~ 647 (794)
T PF08553_consen 646 TL 647 (794)
T ss_pred Ee
Confidence 63
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00057 Score=58.13 Aligned_cols=192 Identities=11% Similarity=0.093 Sum_probs=113.0
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccc------e-EE-eeEEecCCchhhhhhhhhhccCceEEEEEecCcc
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKG------I-RR-GLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS 83 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-v~-~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 83 (271)
..+.++..++.+..++..++...-. +..... . +. .+... ++.. ++.++.++.++-+|.++|+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~----~~~~~~~~~~~~~~~~~g~~~~-~~~~-----V~v~~~~g~v~AlD~~TG~ 131 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWR----YDPKLPADRGCCDVVNRGVAYW-DPRK-----VFFGTFDGRLVALDAETGK 131 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhce----eCCCCCccccccccccCCcEEc-cCCe-----EEEecCCCeEEEEECCCCC
Confidence 4556666678888888877732211 221111 0 00 01111 2123 4466789999999999999
Q ss_pred eeEEEecCCc-------c-eEEEcCCCCEEEEEe---------cCCeEEEEeCCCCCCCcceEEEecCCcc---------
Q 024185 84 FQGILRLRGR-------P-TVAFDQQGLVFAVAM---------EAGAIKLFDSRSYDKGPFDTFLVGGDTA--------- 137 (271)
Q Consensus 84 ~~~~~~~~~~-------~-~~~~~~~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~~~~--------- 137 (271)
.+..+..... . ...+. +..++.++ .++.+..+|..+++. .........
T Consensus 132 ~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~----~W~~~~~~~~~~~~~~~~ 205 (488)
T cd00216 132 QVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKL----LWRFYTTEPDPNAFPTWG 205 (488)
T ss_pred EeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCce----eeEeeccCCCcCCCCCCC
Confidence 8887755421 1 12222 24455553 367899999999886 333221100
Q ss_pred -----------ce-EEEEEcCCCcEEEEEecCC------------------eEEEEECCCCeEEEEeecCCCCC----ce
Q 024185 138 -----------EV-CDIKFSNDGKSMLLTTTNN------------------NIYVLDAYGGEKRCGFSLEPSPN----TN 183 (271)
Q Consensus 138 -----------~v-~~~~~s~~~~~l~~~~~d~------------------~i~~~d~~~~~~~~~~~~~~~~~----~v 183 (271)
.+ ...++.+.+..++.++.++ .+.-+|..+|+.+..+....... ..
T Consensus 206 ~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~ 285 (488)
T cd00216 206 PDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGP 285 (488)
T ss_pred CCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccC
Confidence 01 1244555566777777655 79999999999988765322210 00
Q ss_pred eeEEEC----CCCC---EEEEecCCCcEEEEEcCCceeEEEec
Q 024185 184 TEATFT----PDGQ---YVVSGSGDGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 184 ~~~~~~----~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 219 (271)
....+. -++. .++.++.+|.+...|.++|+.+...+
T Consensus 286 s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 286 NQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred CCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 001111 2333 57788889999999999999987654
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0018 Score=49.38 Aligned_cols=191 Identities=15% Similarity=0.180 Sum_probs=119.5
Q ss_pred EEEEEcccccce-EEeeEEecCCchhhhhhhhhhccCc--eEEEEEecCcceeEEEecCCc---ceEEEcCCCCEEEEEe
Q 024185 36 MIIEFFATSKGI-RRGLFLSACLQLMIALCLVLLTTAL--EYGIFVLMLASFQGILRLRGR---PTVAFDQQGLVFAVAM 109 (271)
Q Consensus 36 ~~~~~~~~~~~~-v~~~~~s~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~ 109 (271)
..++.+.+.... ...+.+..++.. +-|.+.-| .|+.+|+++++..+....... ..++.. +++...-.-
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~L-----yESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTW 107 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTL-----YESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTW 107 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEE-----EEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEES
T ss_pred EEEEECCCCCcccCccEEecCCCEE-----EEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEe
Confidence 445556655544 445777677776 44555544 788899999998777765542 225554 334444556
Q ss_pred cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC---CceeeE
Q 024185 110 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---NTNTEA 186 (271)
Q Consensus 110 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~ 186 (271)
.++...+||..+.+. ...+.+.+ .-..++ .|++.|+.+.....++.+|..+.+..+++...... ..++.+
T Consensus 108 k~~~~f~yd~~tl~~--~~~~~y~~---EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL 180 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKK--IGTFPYPG---EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL 180 (264)
T ss_dssp SSSEEEEEETTTTEE--EEEEE-SS---S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred cCCeEEEEccccceE--EEEEecCC---cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence 789999999988664 44555443 334444 56777888777889999999888777776544332 345667
Q ss_pred EECCCCCEEEEecCCCcEEEEEcCCceeEEEecC------------C---cceeEEEEEecCCc-EEEEe
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG------------N---IGVVACLKWAPRRA-MFVAA 240 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------~---~~~v~~~~~s~~~~-~l~~~ 240 (271)
.|- +|...|-.-....|...|..+|+....+.- + ..-.+.+++.|... +++||
T Consensus 181 E~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 181 EYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 774 677777777778899999999998876521 1 23578999998765 45555
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.4e-05 Score=62.98 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=88.4
Q ss_pred EEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc-EEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCC
Q 024185 114 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 114 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 192 (271)
++..+..+.+. ..-+.+|...|.+++|||..+ ++..++.+..|++.|+++...+..+..+.. +.+++|+-|.
T Consensus 175 v~~l~~~~fks----sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~---~wSC~wDlde 247 (463)
T KOG1645|consen 175 VQKLESHDFKS----SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQ---IWSCCWDLDE 247 (463)
T ss_pred eEEeccCCcch----hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCC---ceeeeeccCC
Confidence 45555444433 223556778899999999776 678889999999999999988888877633 8899998875
Q ss_pred -CEEEEecCCCcEEEEEcCCceeE-EEecC--CcceeEEEE------EecCCcEEEEeCCeEEEEcCCC
Q 024185 193 -QYVVSGSGDGTLHAWNINTRNEV-ACWNG--NIGVVACLK------WAPRRAMFVAASSVLSFWIPNP 251 (271)
Q Consensus 193 -~~l~~~~~dg~i~iwd~~~~~~~-~~~~~--~~~~v~~~~------~s~~~~~l~~~~~~v~iw~~~~ 251 (271)
++++.|-.+|.|.|||++..+-. ..+.+ ...+|..++ ..+-|.+|+.++-.+..|++..
T Consensus 248 ~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~ 316 (463)
T KOG1645|consen 248 RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVF 316 (463)
T ss_pred cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhc
Confidence 46667777999999999865432 22221 122333333 2333555555556667776643
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0027 Score=50.17 Aligned_cols=175 Identities=11% Similarity=0.061 Sum_probs=109.5
Q ss_pred ceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEe----------cCCeEEEEeCCCCCCCcceEEEecCC-cc---
Q 024185 72 LEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAM----------EAGAIKLFDSRSYDKGPFDTFLVGGD-TA--- 137 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~-~~--- 137 (271)
++++++|.++++.+..+...-..-+..+|+++.+++++ ....|.+||..+.+. .....+... ..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~--~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP--TGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE--EEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc--cceEecCCcchheec
Confidence 58999999999998888776555578899999888753 234799999998653 334444431 21
Q ss_pred -ceEEEEEcCCCcEEEEEec--CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC-Cce
Q 024185 138 -EVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN-TRN 213 (271)
Q Consensus 138 -~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~ 213 (271)
....+++++||++++.... -..|.+-|+..++.+..+.... +..+-=+++ +.+.+-|.||++.-..+. .|+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGN-RGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEET-TEEEEEETTSCEEEEEETSTSS
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCC-CceEEEecCCceEEEEECCCCC
Confidence 2234688999999888754 5679999999999988776543 222211222 346777889998888887 455
Q ss_pred eEEEe----cCCcce-eEEEEEecCCc-EEEEe-CCeEEEEcCCCCC
Q 024185 214 EVACW----NGNIGV-VACLKWAPRRA-MFVAA-SSVLSFWIPNPSS 253 (271)
Q Consensus 214 ~~~~~----~~~~~~-v~~~~~s~~~~-~l~~~-~~~v~iw~~~~~~ 253 (271)
...+. .....+ ...-+++..+. ++... .|.|+--|+....
T Consensus 170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 170 EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence 54321 111122 23444554443 33332 2777777776554
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0019 Score=48.61 Aligned_cols=135 Identities=11% Similarity=0.021 Sum_probs=89.1
Q ss_pred hhhhccCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK 143 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 143 (271)
++.|+..+.+.--|..+|+....-... .+.+-+.- -|++++.|..+|.+++.+.+++++ ...+... ..--....
T Consensus 26 v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~--~w~f~~~--~~vk~~a~ 100 (354)
T KOG4649|consen 26 VVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ--IWNFVIL--ETVKVRAQ 100 (354)
T ss_pred EEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh--eeeeeeh--hhhccceE
Confidence 557888888888888888876543222 22221111 477899999999999999999975 2233221 11112335
Q ss_pred EcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEE
Q 024185 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA 206 (271)
Q Consensus 144 ~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 206 (271)
..+++..+..++.|++.+..|.++..++.+.+..... ..+.+..|-...|+.+...|.+.-
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceEEE
Confidence 6778999999999999999999999988886655443 445666773333444444444433
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0011 Score=54.46 Aligned_cols=201 Identities=12% Similarity=0.108 Sum_probs=108.8
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC----------CcceEEEc-----CCC---
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR----------GRPTVAFD-----QQG--- 102 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~~~~~-----~~~--- 102 (271)
++...+.|+++..|.-|= ++.|..+|.+.|.|++....+..-... .+.++.|+ .|+
T Consensus 82 ~~~~~g~vtal~~S~iGF------vaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIGF------VAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp E---S-SEEEEEE-BTSE------EEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred eeccCCcEeEEecCCCcE------EEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence 344567888888875443 678889999999999877665543211 13345553 344
Q ss_pred CEEEEEecCCeEEEEeCC--CCCCCcceE-EEecCCccceEEEE-EcCC-C-------------------cEEEEEecCC
Q 024185 103 LVFAVAMEAGAIKLFDSR--SYDKGPFDT-FLVGGDTAEVCDIK-FSND-G-------------------KSMLLTTTNN 158 (271)
Q Consensus 103 ~~l~~~~~d~~i~i~d~~--~~~~~~~~~-~~~~~~~~~v~~~~-~s~~-~-------------------~~l~~~~~d~ 158 (271)
-.+++|...|.+.+|.+. .+..-.... .....+.+++..+. ++.+ | +.++....+.
T Consensus 156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~ 235 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES 235 (395)
T ss_dssp EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence 478889999999999874 111100001 11123556666554 3222 1 1234444467
Q ss_pred eEEEEECCCCeEEEEeecCCCCCceeeEEEC-----CCCCEEEEecCCCcEEEEEcCCceeEEEecCC----cceeEEEE
Q 024185 159 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-----PDGQYVVSGSGDGTLHAWNINTRNEVACWNGN----IGVVACLK 229 (271)
Q Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~ 229 (271)
.++++...+.+..++.. .....+..+++- ..+..|++-..+|.++++.+...+.+..+.-+ ...+....
T Consensus 236 ~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 236 DIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp EEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred ceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 89999998887766544 222123334442 35667888889999999999998888876543 23456778
Q ss_pred EecCCcEEEEeC-CeEEEEcC
Q 024185 230 WAPRRAMFVAAS-SVLSFWIP 249 (271)
Q Consensus 230 ~s~~~~~l~~~~-~~v~iw~~ 249 (271)
++++|..++-.+ ..+.++.+
T Consensus 314 is~~Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SSSEEEEEEE
T ss_pred ECCCCCEEEEeCcccEEEEEE
Confidence 899999888777 55444433
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.4e-06 Score=72.34 Aligned_cols=153 Identities=16% Similarity=0.216 Sum_probs=106.0
Q ss_pred CcceEEEcCCC--CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEec----CCeEEEEE
Q 024185 92 GRPTVAFDQQG--LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTT----NNNIYVLD 164 (271)
Q Consensus 92 ~~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~----d~~i~~~d 164 (271)
...|+++.-+. ..+++|..+|.|.+-..+...-. ......++..++++++|++ |.+.||+|-. |..+.+||
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc--cceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 45666665443 47888999999999888765421 1233567788999999999 6677777743 67899999
Q ss_pred CCCC--eEE--EEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCce-eEEEecCCcceeEEEEEec-CCcEEE
Q 024185 165 AYGG--EKR--CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN-EVACWNGNIGVVACLKWAP-RRAMFV 238 (271)
Q Consensus 165 ~~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~ 238 (271)
+.++ .+. ..+... ......+++|..+.+.+.+|.....++++|++... ....+ ....+..+...| .+.+++
T Consensus 136 i~s~ltvPke~~~fs~~-~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSS-TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccccCCCccccccccc-cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCcee
Confidence 9776 221 222221 11224468999999999999999999999997322 22222 223466778888 778898
Q ss_pred EeC-CeEEEEcC
Q 024185 239 AAS-SVLSFWIP 249 (271)
Q Consensus 239 ~~~-~~v~iw~~ 249 (271)
+-. |.+-+||.
T Consensus 213 s~~dg~iAiwD~ 224 (783)
T KOG1008|consen 213 SNSDGDIAIWDT 224 (783)
T ss_pred ccccCceeeccc
Confidence 887 99999994
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0045 Score=49.75 Aligned_cols=174 Identities=13% Similarity=0.107 Sum_probs=104.0
Q ss_pred ceEEEEEecCcceeEEEecCC---cce---EEEcCC----CCEEEEEec---------C-CeEEEEeCCCC-CC-CcceE
Q 024185 72 LEYGIFVLMLASFQGILRLRG---RPT---VAFDQQ----GLVFAVAME---------A-GAIKLFDSRSY-DK-GPFDT 129 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~~---~~~---~~~~~~----~~~l~~~~~---------d-~~i~i~d~~~~-~~-~~~~~ 129 (271)
..|++.|..+.+.+..+.... +.+ +.+..+ ..+|++|+. . |.|.++++... .. ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 357888888887776664432 333 444433 467887743 2 88999999884 10 00111
Q ss_pred EEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe-EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEE
Q 024185 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 130 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 208 (271)
..-....++|++++-- ++. |+++. .+.|.+|++...+ ....-. ...+..+.++.. .+++++.|.....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~-~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAF-YDSPFYITSLSV--FKNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEE-E-BSSSEEEEEE--ETTEEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhhe-ecceEEEEEEec--cccEEEEEEcccCEEEEE
Confidence 1122345788888766 444 44443 5789999998877 444322 222224655544 466999998888888875
Q ss_pred cCC-ceeEEEe--cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 209 INT-RNEVACW--NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 209 ~~~-~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
.+. +..+..+ ......++++.|-++++.++.++ |.+.++..+.
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 543 3323333 23355688999987777777776 8999998864
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0056 Score=50.40 Aligned_cols=180 Identities=13% Similarity=0.121 Sum_probs=122.2
Q ss_pred eEEeeEEecCCchhhhhhhhhhc--cCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEEe-cCCeEEEEeCCCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLT--TALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVAM-EAGAIKLFDSRSY 122 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~ 122 (271)
.-..++++|+++.+++ +-. .++++.+.|..+++......... ...++++|+|+.++... .++.+.+.|.+..
T Consensus 117 ~P~~~~~~~~~~~vYV----~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~ 192 (381)
T COG3391 117 GPVGLAVDPDGKYVYV----ANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGN 192 (381)
T ss_pred CCceEEECCCCCEEEE----EecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCc
Confidence 4455889999987543 333 47899999999988887765443 34599999999777764 6789999997766
Q ss_pred CCCcceE-EEecCCccceEEEEEcCCCcEEEEEecC---CeEEEEECCCCeEEEE-eecCCCCCceeeEEECCCCCEEEE
Q 024185 123 DKGPFDT-FLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCG-FSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 123 ~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
.... .. .....-...-..+.++|+|+++.+.... +.+...|..++..... ...... ....+..+|+|+++..
T Consensus 193 ~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~--~~~~v~~~p~g~~~yv 269 (381)
T COG3391 193 SVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG--APRGVAVDPAGKAAYV 269 (381)
T ss_pred ceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC--CCCceeECCCCCEEEE
Confidence 5310 00 0001122345678999999987776553 5899999998877665 222221 2455899999999888
Q ss_pred ecC-CCcEEEEEcCCceeEEEecCCcc---eeEEEEEecC
Q 024185 198 GSG-DGTLHAWNINTRNEVACWNGNIG---VVACLKWAPR 233 (271)
Q Consensus 198 ~~~-dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~ 233 (271)
... .+.+.+.|..+............ .+..+++.+.
T Consensus 270 ~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 270 ANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 744 48899999988877776543322 3445555543
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00066 Score=58.63 Aligned_cols=146 Identities=11% Similarity=0.077 Sum_probs=84.1
Q ss_pred cceEEEcCCCCEEEEEe------cCC--eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC-------
Q 024185 93 RPTVAFDQQGLVFAVAM------EAG--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN------- 157 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~------~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------- 157 (271)
+...+++|+|+.++... .|+ .+.+++... .. ... ..+ .......|+|||+.+++....
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~---~~l-t~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA---VQV-LEG--HSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc---eee-ecC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence 44589999999887765 233 555556422 21 122 222 237889999999988877543
Q ss_pred -----CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEE---EEcCCcee-E---EEe-cCCcce
Q 024185 158 -----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA---WNINTRNE-V---ACW-NGNIGV 224 (271)
Q Consensus 158 -----~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~~-~---~~~-~~~~~~ 224 (271)
+.+.+.+++.++... ... ..|..+.|||||+.++... +|.|++ -....|+. + ..+ .+-...
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~--g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVP--GPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDT 498 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccC--CCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCc
Confidence 222222333322211 111 3489999999999988766 467776 34334431 1 112 222334
Q ss_pred eEEEEEecCCcEEEEeC-Ce--EEEEcCCC
Q 024185 225 VACLKWAPRRAMFVAAS-SV--LSFWIPNP 251 (271)
Q Consensus 225 v~~~~~s~~~~~l~~~~-~~--v~iw~~~~ 251 (271)
+.++.|.+++.+++... +. +...++..
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG 528 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDG 528 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCC
Confidence 68899999998665444 33 44444443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.008 Score=51.62 Aligned_cols=241 Identities=12% Similarity=0.064 Sum_probs=130.9
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccc--eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKG--IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
++++++..++.++.++..+|...-... ...+.. .+.+--.-.++..++...-.-.+.+|.|.-+|.++|+.+..+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~--~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKK--NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecc--cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 456777778889999988884332210 111110 1111001113332111000001237899999999998776652
Q ss_pred cC---------------------------------Ccc-eEEEcCCCCEEEEEecC-----C-----------eEEEEeC
Q 024185 90 LR---------------------------------GRP-TVAFDQQGLVFAVAMEA-----G-----------AIKLFDS 119 (271)
Q Consensus 90 ~~---------------------------------~~~-~~~~~~~~~~l~~~~~d-----~-----------~i~i~d~ 119 (271)
.- .++ .+++.|+..+++.+..+ + .|...|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 21 011 15777777777776522 2 6778888
Q ss_pred CCCCCCcceEEEec--CCcc-------ceEEEEEcCCCc---EEEEEecCCeEEEEECCCCeEEEEeec-----------
Q 024185 120 RSYDKGPFDTFLVG--GDTA-------EVCDIKFSNDGK---SMLLTTTNNNIYVLDAYGGEKRCGFSL----------- 176 (271)
Q Consensus 120 ~~~~~~~~~~~~~~--~~~~-------~v~~~~~s~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~----------- 176 (271)
++++. ...++ .|.. ...=+....+|+ .++.+.++|.+++.|.++|+.+...+.
T Consensus 279 ~TG~~----~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~ 354 (527)
T TIGR03075 279 DTGKI----KWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVD 354 (527)
T ss_pred ccCCE----EEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccC
Confidence 98886 33322 2221 111122334665 677899999999999999987522100
Q ss_pred -CCC-C--------------------------CceeeEEECCCCCEEEEecC----------------------------
Q 024185 177 -EPS-P--------------------------NTNTEATFTPDGQYVVSGSG---------------------------- 200 (271)
Q Consensus 177 -~~~-~--------------------------~~v~~~~~~~~~~~l~~~~~---------------------------- 200 (271)
... + ..-..++++|+..+++....
T Consensus 355 ~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p 434 (527)
T TIGR03075 355 LKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKP 434 (527)
T ss_pred CCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCC
Confidence 000 0 00012556666555543222
Q ss_pred -----CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 201 -----DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 201 -----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
-|.|.-+|+.+++..-..+.......+. ..-.+.+++.++ |.++.+|.++++.+-+.+
T Consensus 435 ~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 435 PPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred CCCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 2468888998988877665322111222 122344555555 889999999998775554
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00036 Score=57.36 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=95.1
Q ss_pred cCCCCEEE-EEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcE-------EEEEecCCeEEEEECCCC-e
Q 024185 99 DQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS-------MLLTTTNNNIYVLDAYGG-E 169 (271)
Q Consensus 99 ~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-------l~~~~~d~~i~~~d~~~~-~ 169 (271)
..+.+.|+ .+.....++-.|++.++. +..+.+ +.. |.-+.+.|+.+. -+.|-.|..|.-||.|-. +
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKI--VeEWk~--~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~ 416 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKI--VEEWKF--EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK 416 (644)
T ss_pred ccccceEeeCCCCcCcceeeeccccee--eeEeec--cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc
Confidence 33444443 445556788889999886 334443 333 777778886432 344566888999998732 2
Q ss_pred -EEEEeecCCCC--CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEE
Q 024185 170 -KRCGFSLEPSP--NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLS 245 (271)
Q Consensus 170 -~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~ 245 (271)
.+...+.+... ....|.+-..+| +++.|+.+|.|++||--.......+++-..+|..+..+.||+++++.+ ..+.
T Consensus 417 ~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLl 495 (644)
T KOG2395|consen 417 NKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLL 495 (644)
T ss_pred ceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEE
Confidence 22222222221 234555555555 799999999999999733333445688889999999999999888777 6666
Q ss_pred EEcCC
Q 024185 246 FWIPN 250 (271)
Q Consensus 246 iw~~~ 250 (271)
+-++.
T Consensus 496 Li~t~ 500 (644)
T KOG2395|consen 496 LIDTL 500 (644)
T ss_pred EEEEe
Confidence 66653
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0077 Score=47.18 Aligned_cols=229 Identities=12% Similarity=0.083 Sum_probs=124.9
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE-
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI- 87 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~- 87 (271)
...+.|++|+++| +..++.......... . +...|..+...+.-+.+++ -.|+.++++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i---~--~~~~I~ql~vl~~~~~llv------Lsd~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI---L--KLSSITQLSVLPELNLLLV------LSDGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE---e--ecceEEEEEEecccCEEEE------EcCCccEEEEchhhcccccc
Confidence 4457899998877 666666222111111 1 1222888888887776433 2359999999875443321
Q ss_pred --------------E-ecCCcceEE--EcCCC-CEEEEEecCCeEEEEeCCCCCC---CcceEEEecCCccceEEEEEcC
Q 024185 88 --------------L-RLRGRPTVA--FDQQG-LVFAVAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSN 146 (271)
Q Consensus 88 --------------~-~~~~~~~~~--~~~~~-~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~s~ 146 (271)
+ ...++...+ -...+ ..|+++. ...|.+|....... .....+.+ ...+.+++|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~l---p~~~~~i~~~- 147 (275)
T PF00780_consen 73 APLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISL---PDPPSSIAFL- 147 (275)
T ss_pred ccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEc---CCCcEEEEEe-
Confidence 1 111222233 11233 3445444 55888888766421 12333333 3778899999
Q ss_pred CCcEEEEEecCCeEEEEECCCCeEEEEeecCCC----------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE
Q 024185 147 DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS----------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 216 (271)
Q Consensus 147 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 216 (271)
++.++.|..+ ...+.|+.++.....+..... ...+..+.. +++.+|++- +..-.+.|. .|+..+
T Consensus 148 -~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r 221 (275)
T PF00780_consen 148 -GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSR 221 (275)
T ss_pred -CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCc
Confidence 4567777655 488899987765443321111 011222333 345666643 222333333 444333
Q ss_pred --EecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCCcCCCCCCc
Q 024185 217 --CWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNSTDESTDPQ 263 (271)
Q Consensus 217 --~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~~~~~~~~~ 263 (271)
.+. ......++++. ..+|+..+ +.|.||++.++++......+..
T Consensus 222 ~~~i~-W~~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~~ 268 (275)
T PF00780_consen 222 KSTIQ-WSSAPQSVAYS--SPYLIAFSSNSIEVRSLETGELVQTIPLPNI 268 (275)
T ss_pred ccEEE-cCCchhEEEEE--CCEEEEECCCEEEEEECcCCcEEEEEECCCE
Confidence 222 22345566664 34666655 8899999999988766654433
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0027 Score=50.23 Aligned_cols=185 Identities=12% Similarity=0.138 Sum_probs=101.2
Q ss_pred hhccCceEEEEEecCcceeEEEecC-Ccce-EEEcCCCCEEEEEecCCeEEEEeCCCCCC-CcceEEEecCCccceEEEE
Q 024185 67 LLTTALEYGIFVLMLASFQGILRLR-GRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDK-GPFDTFLVGGDTAEVCDIK 143 (271)
Q Consensus 67 s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~ 143 (271)
+--..+.|.-|+..+++.. .+... ...+ ......+ .|+++. ..+.+++.+++.. .......-.......+...
T Consensus 42 ~DI~~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d~~g-~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~ 117 (307)
T COG3386 42 VDILGGRIHRLDPETGKKR-VFPSPGGFSSGALIDAGG-RLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGV 117 (307)
T ss_pred EeCCCCeEEEecCCcCceE-EEECCCCcccceeecCCC-eEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCcee
Confidence 4445667777777766532 33332 3333 4444444 444443 3356666654442 0010100011124456788
Q ss_pred EcCCCcEEEEEec-----------CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CCcEEEEEcCC
Q 024185 144 FSNDGKSMLLTTT-----------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINT 211 (271)
Q Consensus 144 ~s~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 211 (271)
..|+|.+-+.... -|.++.+|. .+..++.+..+-. .-+.++||||++.++.+.. .+.|+-|++..
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~--~~NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT--IPNGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE--ecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 8999886554332 133554543 4544444433221 2455999999987776654 57888887752
Q ss_pred --c----ee-EEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCCCcCCC
Q 024185 212 --R----NE-VACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 212 --~----~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~~~~~~ 259 (271)
+ +. ...+....+..-.++...+|++.+++- +.|.+|+.+ +++.....
T Consensus 195 ~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~ 251 (307)
T COG3386 195 ATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK 251 (307)
T ss_pred ccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE
Confidence 1 11 122223345556788888998875443 389999999 66554443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0017 Score=55.82 Aligned_cols=115 Identities=12% Similarity=0.115 Sum_probs=78.4
Q ss_pred cceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEE--CCCCCEEEEecCCCcEEEEEcC----
Q 024185 137 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF--TPDGQYVVSGSGDGTLHAWNIN---- 210 (271)
Q Consensus 137 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~---- 210 (271)
....-+.-|.-++..++-+....+.|||.+.+.....-.. .....|.++.| .|+|+.+++.+..+.|.+|--.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3444455555555444544566799999998876554332 22244888988 5789999999999999988542
Q ss_pred -----CceeEEEe--cCCc-ceeEEEEEecCCcEEEEeCCeEEEEcCCCC
Q 024185 211 -----TRNEVACW--NGNI-GVVACLKWAPRRAMFVAASSVLSFWIPNPS 252 (271)
Q Consensus 211 -----~~~~~~~~--~~~~-~~v~~~~~s~~~~~l~~~~~~v~iw~~~~~ 252 (271)
+...+..+ ..|. .+|.+..|.++|.+++.+++.+.|+|-.-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~~~ 158 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKWLD 158 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCCcC
Confidence 12233333 3333 578999999999988888899999986443
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0013 Score=50.07 Aligned_cols=110 Identities=13% Similarity=0.186 Sum_probs=79.2
Q ss_pred ceEEEEEcCCC-cEEEEEecCCe-EEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC-----CcEEEEEcC
Q 024185 138 EVCDIKFSNDG-KSMLLTTTNNN-IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-----GTLHAWNIN 210 (271)
Q Consensus 138 ~v~~~~~s~~~-~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~ 210 (271)
....++++|.. .-++.+-.-|+ ..++|....+.+.++.........-.-.|||||.+|+..-.| |.|-+||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 34557788853 34555555444 678898888777776655544334446799999999876443 689999998
Q ss_pred Cc-eeEEEecCCcceeEEEEEecCCcEEEEeCCeEEEE
Q 024185 211 TR-NEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 247 (271)
Q Consensus 211 ~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~v~iw 247 (271)
.+ ..+.++..|.-....+.|.+||+.++.+.|-|..-
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIeth 186 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETH 186 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecc
Confidence 53 44667888887788999999999999998766655
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0045 Score=51.62 Aligned_cols=152 Identities=13% Similarity=0.179 Sum_probs=86.9
Q ss_pred EEEcCCCCEEEEE-ecCC----eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC-----------Ce
Q 024185 96 VAFDQQGLVFAVA-MEAG----AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----------NN 159 (271)
Q Consensus 96 ~~~~~~~~~l~~~-~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------~~ 159 (271)
.+++||++++|.+ +..| .++++|+++++. + .-.+.. .....+.|.+|++.|+....+ ..
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~--l-~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF--L-PDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE--E-EEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcC--c-CCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 7889999999877 3334 599999999863 1 111111 222349999998888766533 23
Q ss_pred EEEEECCCCeEE--EEeecCCCCCceeeEEECCCCCEEEEecC---C-CcEEEEEcCCc----eeEEEecCCccee-EEE
Q 024185 160 IYVLDAYGGEKR--CGFSLEPSPNTNTEATFTPDGQYVVSGSG---D-GTLHAWNINTR----NEVACWNGNIGVV-ACL 228 (271)
Q Consensus 160 i~~~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~iwd~~~~----~~~~~~~~~~~~v-~~~ 228 (271)
|+.|.+.+.... ..+...........+..++|+++++.... + ..+.+.|+..+ .....+..+...+ ..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 788888766432 33444444332567889999999875433 2 45888888764 2333332222223 333
Q ss_pred EEecCCcEEEEeC-----CeEEEEcCCCCC
Q 024185 229 KWAPRRAMFVAAS-----SVLSFWIPNPSS 253 (271)
Q Consensus 229 ~~s~~~~~l~~~~-----~~v~iw~~~~~~ 253 (271)
... ++.+++... +.|.-.++....
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccc
Confidence 333 454544443 445555665544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00014 Score=37.30 Aligned_cols=38 Identities=37% Similarity=0.691 Sum_probs=31.2
Q ss_pred eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEE
Q 024185 169 EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 208 (271)
++...+..+... +.++.|+|+++++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGP--VTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCc--eeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445556655554 99999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.011 Score=45.67 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=88.0
Q ss_pred CcceEEEcCCCCEEEEEe---cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE-CCC
Q 024185 92 GRPTVAFDQQGLVFAVAM---EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD-AYG 167 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d-~~~ 167 (271)
.....+++++++.++... ....++++...... ...+.+ ..+....|++++...+....+...+++. ..+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~-----~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV-----RPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS 97 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc-----eeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence 345699999999887765 33456666544332 111222 3788889999987666666566666663 333
Q ss_pred CeEEE-EeecCCCCCceeeEEECCCCCEEEEec---CCCcEEEEEcC---Cc------eeEEEecCCcceeEEEEEecCC
Q 024185 168 GEKRC-GFSLEPSPNTNTEATFTPDGQYVVSGS---GDGTLHAWNIN---TR------NEVACWNGNIGVVACLKWAPRR 234 (271)
Q Consensus 168 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~---~~------~~~~~~~~~~~~v~~~~~s~~~ 234 (271)
++... ..........|..+.+||||..++... .++.|.+--+. .+ ..+.........+..++|.+++
T Consensus 98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 33222 222221111599999999999888665 34677766543 22 1112222334578999999999
Q ss_pred cEEEEeC
Q 024185 235 AMFVAAS 241 (271)
Q Consensus 235 ~~l~~~~ 241 (271)
.+++.+.
T Consensus 178 ~L~V~~~ 184 (253)
T PF10647_consen 178 TLVVLGR 184 (253)
T ss_pred EEEEEeC
Confidence 9888776
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=37.31 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=31.2
Q ss_pred EEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 129 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 129 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
...+..|...+.++.|++++..+++++.|+.+++||
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 344557888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.019 Score=47.72 Aligned_cols=187 Identities=13% Similarity=0.149 Sum_probs=95.4
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE----ecCCcc-e----EEEcCCCCEEEEEecCCeEEE
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL----RLRGRP-T----VAFDQQGLVFAVAMEAGAIKL 116 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~-~----~~~~~~~~~l~~~~~d~~i~i 116 (271)
+.+.++.|+.+... +.-..||.++++|+. |+....+ ...++. + ..+..+| ++.-..++.+++
T Consensus 81 ~~iv~~~wt~~e~L------vvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEEL------VVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYV 151 (410)
T ss_pred CCEEEEEECCCCeE------EEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEE
Confidence 67777888887764 455899999999985 3331111 111111 1 1222244 333344555554
Q ss_pred EeCCCCCCCcceEEEecC-------CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEEC
Q 024185 117 FDSRSYDKGPFDTFLVGG-------DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 189 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~ 189 (271)
.+-............... +........++.+....+....++.+.+.+-...+. +. . .+.+..++.|
T Consensus 152 v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~--~~~i~~iavS 225 (410)
T PF04841_consen 152 VNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-S--DGPIIKIAVS 225 (410)
T ss_pred EeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-C--CCCeEEEEEC
Confidence 433221110000000000 000000023444444444445555565444322111 11 1 1348999999
Q ss_pred CCCCEEEEecCCCcEEEEEcCCceeEEEecCC-cceeEEEEEecCCcEEEEeCCeEEEE
Q 024185 190 PDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAASSVLSFW 247 (271)
Q Consensus 190 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~v~iw 247 (271)
|+++++|.-..+|.+.+....-.+.+..+... ......+.|.-+...++.-...+.+.
T Consensus 226 png~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l~lv 284 (410)
T PF04841_consen 226 PNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDELLLV 284 (410)
T ss_pred CCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEeCCEEEEE
Confidence 99999999999999999887666666555433 33456777776544333333334443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0045 Score=40.46 Aligned_cols=96 Identities=17% Similarity=0.243 Sum_probs=63.0
Q ss_pred EEcCCC-CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEee
Q 024185 97 AFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS 175 (271)
Q Consensus 97 ~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 175 (271)
.|..|| +.|++|+.|..|++|+-.. . ...+. ..+.|.++.-... ..++.+..+|+|-+|+- .+.+...+
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~e--~----~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiK 78 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGDE--I----VAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIK 78 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCCc--E----EEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeec
Confidence 334444 5899999999999999663 2 22222 3467888887776 56899999999999984 33344444
Q ss_pred cCCCCCceeeEEE-CCC--C-CEEEEecCCCcEE
Q 024185 176 LEPSPNTNTEATF-TPD--G-QYVVSGSGDGTLH 205 (271)
Q Consensus 176 ~~~~~~~v~~~~~-~~~--~-~~l~~~~~dg~i~ 205 (271)
.... +.++++ ..+ | .-|++|-.+|.|-
T Consensus 79 SK~~---~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 79 SKNQ---VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cCCC---eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3333 444443 333 2 2677888888764
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00025 Score=62.86 Aligned_cols=109 Identities=15% Similarity=0.194 Sum_probs=78.7
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEee
Q 024185 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS 175 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 175 (271)
.+..-.+..+++|+..|.+-..|+... ..+ ...-..-.++|++++|+.+|+.++.|-.+|.|.+||...++..+.+.
T Consensus 93 ~s~a~~~~~ivi~Ts~ghvl~~d~~~n-L~~--~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~ 169 (1206)
T KOG2079|consen 93 ISSAIVVVPIVIGTSHGHVLLSDMTGN-LGP--LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT 169 (1206)
T ss_pred eeeeeeeeeEEEEcCchhhhhhhhhcc-cch--hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence 333334557889998999988888653 211 12222345789999999999999999999999999999999988887
Q ss_pred cCCCC-CceeeEEECCCCCEEEEecCCCcEEEEEc
Q 024185 176 LEPSP-NTNTEATFTPDGQYVVSGSGDGTLHAWNI 209 (271)
Q Consensus 176 ~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 209 (271)
.+..+ ..+..+.+..++..++++...|. +|.+
T Consensus 170 e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 170 EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 77665 33444555566666777777775 4543
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.01 Score=48.44 Aligned_cols=185 Identities=11% Similarity=0.105 Sum_probs=92.1
Q ss_pred hhhccCceEEEEEecCc----ceeEEEecCC------c--c-eEEEcCCCCEEEEEe--c----CCeEEEEeCCCCCCCc
Q 024185 66 VLLTTALEYGIFVLMLA----SFQGILRLRG------R--P-TVAFDQQGLVFAVAM--E----AGAIKLFDSRSYDKGP 126 (271)
Q Consensus 66 ~s~~~dg~i~iwd~~~~----~~~~~~~~~~------~--~-~~~~~~~~~~l~~~~--~----d~~i~i~d~~~~~~~~ 126 (271)
+-|-..+.|++.|+.+. +..++++... . + .+-.-|+|+.++++- . -|.+.++|-++.+.
T Consensus 92 ~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v-- 169 (461)
T PF05694_consen 92 LPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEV-- 169 (461)
T ss_dssp EEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--E--
T ss_pred eeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccc--
Confidence 34557889999998743 4445554321 1 1 133457888888762 2 24688888887654
Q ss_pred ceEEEec-CCccceEEEEEcCCCcEEEEEec--------------------CCeEEEEECCCCeEEEEeecCCCCCceee
Q 024185 127 FDTFLVG-GDTAEVCDIKFSNDGKSMLLTTT--------------------NNNIYVLDAYGGEKRCGFSLEPSPNTNTE 185 (271)
Q Consensus 127 ~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~--------------------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 185 (271)
....... +....-..+-|.|..+.+++... ..++.+||+.+.+.++++...........
T Consensus 170 ~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLE 249 (461)
T PF05694_consen 170 KGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLE 249 (461)
T ss_dssp EEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEE
T ss_pred cceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEE
Confidence 2222221 11234567888998888887652 25899999999999999887654434556
Q ss_pred EEEC--CCCCEEEEecC-CCcEEEEEc-CCcee----EEEecC-----C------------cceeEEEEEecCCcEEEEe
Q 024185 186 ATFT--PDGQYVVSGSG-DGTLHAWNI-NTRNE----VACWNG-----N------------IGVVACLKWAPRRAMFVAA 240 (271)
Q Consensus 186 ~~~~--~~~~~l~~~~~-dg~i~iwd~-~~~~~----~~~~~~-----~------------~~~v~~~~~s~~~~~l~~~ 240 (271)
+.|. |+..+-++++. ..+|..|-- ..++- +..+.. . ..-|+.+..|.|.++|..+
T Consensus 250 vRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs 329 (461)
T PF05694_consen 250 VRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVS 329 (461)
T ss_dssp EEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEE
T ss_pred EEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEE
Confidence 6664 55555444433 445555543 33321 222211 1 2347899999999999988
Q ss_pred C---CeEEEEcCCCC
Q 024185 241 S---SVLSFWIPNPS 252 (271)
Q Consensus 241 ~---~~v~iw~~~~~ 252 (271)
+ |.++.||+...
T Consensus 330 ~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 330 NWLHGDVRQYDISDP 344 (461)
T ss_dssp ETTTTEEEEEE-SST
T ss_pred cccCCcEEEEecCCC
Confidence 7 99999999764
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0057 Score=47.89 Aligned_cols=147 Identities=12% Similarity=0.090 Sum_probs=89.6
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEee----
Q 024185 100 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS---- 175 (271)
Q Consensus 100 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---- 175 (271)
..++.|+.|.++| +++++...... +.... +...|..+...|+-+.+++-+ |+.++++++..-.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~-~~~i~----~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK-PTRIL----KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc-ceeEe----ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence 4578899998888 99999933221 11111 234499999999877776665 5999999987644333110
Q ss_pred --------cCCCCCceeeEE--ECCCCCEEEEecCCCcEEEEEcCCc-----eeEEEecCCcceeEEEEEecCCcEEEEe
Q 024185 176 --------LEPSPNTNTEAT--FTPDGQYVVSGSGDGTLHAWNINTR-----NEVACWNGNIGVVACLKWAPRRAMFVAA 240 (271)
Q Consensus 176 --------~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 240 (271)
.......+...+ -.+.+...+.......|.+|..... +..+++.- ...+..++|. ++.++.+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVG 154 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEE
Confidence 001111243333 1123333344444558888887653 45555543 3568899998 5566666
Q ss_pred C-CeEEEEcCCCCCCCc
Q 024185 241 S-SVLSFWIPNPSSNST 256 (271)
Q Consensus 241 ~-~~v~iw~~~~~~~~~ 256 (271)
. +...+.|+.++....
T Consensus 155 ~~~~f~~idl~~~~~~~ 171 (275)
T PF00780_consen 155 TSKGFYLIDLNTGSPSE 171 (275)
T ss_pred eCCceEEEecCCCCceE
Confidence 4 789999998765543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0017 Score=53.64 Aligned_cols=138 Identities=11% Similarity=0.082 Sum_probs=95.3
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCE-------EEEEecCCeEEEEeCCCCCCCcceEEEecCC-
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLV-------FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD- 135 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~-------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~- 135 (271)
+.++.....++-.|++.|+.+.....+. ++.+.+.|+.+. -+.|-.+..|.-||++-.... ......+|
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--kl~~~q~kq 426 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--KLAVVQSKQ 426 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc--eeeeeeccc
Confidence 5577777888889999999998887764 577888887531 244556888999998743321 11112222
Q ss_pred ---ccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEE-EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEc
Q 024185 136 ---TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC-GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 209 (271)
Q Consensus 136 ---~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 209 (271)
.....|.+-..+| ++++|+.+|.|++||- .+.... .+.+-..+ |..+..+.||++++..+.. .+.+.++
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~--I~hVdvtadGKwil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDA--IKHVDVTADGKWILATCKT-YLLLIDT 499 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCc--eeeEEeeccCcEEEEeccc-EEEEEEE
Confidence 2346677666666 6999999999999995 554333 35555544 9999999999998876644 5555554
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.02 Score=46.88 Aligned_cols=222 Identities=9% Similarity=0.069 Sum_probs=103.9
Q ss_pred eecceeeEEEEeeccceeeEEEEEccc---cc----ceEEeeEEecCCchhhhhhh--hhhccCceEEEEEecCcceeEE
Q 024185 17 ARQNIILILLESLCGIYQCMIIEFFAT---SK----GIRRGLFLSACLQLMIALCL--VLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~v~~~~~s~~~~~~~~~~l--~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
++....+..++....-.++...+..+. +. ..-...-.-|+|+.++.. + .-|..-|.+.+.|-++.+....
T Consensus 94 gL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~-lGd~~G~g~Ggf~llD~~tf~v~g~ 172 (461)
T PF05694_consen 94 GLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISA-LGDADGNGPGGFVLLDGETFEVKGR 172 (461)
T ss_dssp BTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEE-EEETTS-S--EEEEE-TTT--EEEE
T ss_pred eeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEe-ccCCCCCCCCcEEEEcCccccccce
Confidence 346788999998876667776666654 11 112223344566552220 0 1223345677788877776666
Q ss_pred EecCC-----cceEEEcCCCCEEEEEec--------------------CCeEEEEeCCCCCCCcceEEEecCCccceEEE
Q 024185 88 LRLRG-----RPTVAFDQQGLVFAVAME--------------------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI 142 (271)
Q Consensus 88 ~~~~~-----~~~~~~~~~~~~l~~~~~--------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 142 (271)
.+... ..-+.|.|..+.++++.. ..++.+||..+.+. .+...+.........+
T Consensus 173 We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~--~Q~idLg~~g~~pLEv 250 (461)
T PF05694_consen 173 WEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL--LQTIDLGEEGQMPLEV 250 (461)
T ss_dssp --SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE--EEEEES-TTEEEEEEE
T ss_pred eccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE--eeEEecCCCCCceEEE
Confidence 54432 233788888888877632 35899999998876 5666665444456677
Q ss_pred EEcCC--CcEEEEEe-cCCeEEEEEC-CCCeE----EEEeecCC---C------------CCceeeEEECCCCCEEEEec
Q 024185 143 KFSND--GKSMLLTT-TNNNIYVLDA-YGGEK----RCGFSLEP---S------------PNTNTEATFTPDGQYVVSGS 199 (271)
Q Consensus 143 ~~s~~--~~~l~~~~-~d~~i~~~d~-~~~~~----~~~~~~~~---~------------~~~v~~~~~~~~~~~l~~~~ 199 (271)
.|..+ ..+=++++ -..+|..|-- +.++- +..+.... . +.-++.+.+|.|.++|...+
T Consensus 251 RflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~ 330 (461)
T PF05694_consen 251 RFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSN 330 (461)
T ss_dssp EE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEE
T ss_pred EecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEc
Confidence 77654 44433333 3455555543 33321 22221110 0 23478899999999998766
Q ss_pred C-CCcEEEEEcCCcee---EEEec-C---------------CcceeEEEEEecCCcEEEEeC
Q 024185 200 G-DGTLHAWNINTRNE---VACWN-G---------------NIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 200 ~-dg~i~iwd~~~~~~---~~~~~-~---------------~~~~v~~~~~s~~~~~l~~~~ 241 (271)
. .|.++.||+..... ..++. + -.+...-+..|.||+.|...+
T Consensus 331 W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 331 WLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 5 89999999986433 22221 0 012346688899999877664
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.016 Score=48.15 Aligned_cols=177 Identities=12% Similarity=0.080 Sum_probs=88.7
Q ss_pred eEEEEEecCcceeEEEec--CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcce----EEEecCCccceEEEEEcC
Q 024185 73 EYGIFVLMLASFQGILRL--RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD----TFLVGGDTAEVCDIKFSN 146 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~~~~v~~~~~s~ 146 (271)
.|.+|+. .|+.+..+.- +.+-.+.|+.+.+ |++...||.+++||+.... .+. .....-....+....+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccCC
Confidence 5889988 5666666543 3455589988655 5566679999999986433 000 000011112222333444
Q ss_pred CCcEEEEEecCCeEEEEECCCCe-EEEEeec-CCCC------Cceee-EEECCCCCEEEEecCCCcEEEEEcCCceeEEE
Q 024185 147 DGKSMLLTTTNNNIYVLDAYGGE-KRCGFSL-EPSP------NTNTE-ATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC 217 (271)
Q Consensus 147 ~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~-~~~~------~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 217 (271)
+|- +.-..++.+.+.+--... ..+.+.. .... ..... ..++.+....+....++.+.+.+-...+.
T Consensus 138 ~Gi--vvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 138 NGI--VVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--- 212 (410)
T ss_pred CCE--EEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---
Confidence 553 333344555544322211 1111110 0000 00000 22334444444444444555333222111
Q ss_pred ecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 218 WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 218 ~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+. ..+++..++.||+|+++|.-. |.+.+.+.+-.+...+..
T Consensus 213 i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 213 ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 22 235799999999999888765 778787766555444443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.015 Score=43.26 Aligned_cols=133 Identities=12% Similarity=0.091 Sum_probs=82.7
Q ss_pred ceEEEcCCCCEEEEEecC---------CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEE-ecCCeEEEE
Q 024185 94 PTVAFDQQGLVFAVAMEA---------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVL 163 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~ 163 (271)
+.-..+|+|++++-...| |.++.|-....- ..+.+.-+--..++|+.+.+.+... +.+-.|.-|
T Consensus 112 NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v------~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 112 NDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQV------ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred ccCccCCCCceeeeeeccccccccccccEEEEeccCCCc------eeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 336778999984332222 344444432211 1111122334568899888777654 557778777
Q ss_pred E--CCCCeE-----EEEeecCC--CCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEec
Q 024185 164 D--AYGGEK-----RCGFSLEP--SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 232 (271)
Q Consensus 164 d--~~~~~~-----~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 232 (271)
| ..+|.. +..++... .....-.++...+|++.++.-..++|...|..+|+.+.++.-....|++++|--
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 7 555532 22222110 111122366677899888888889999999999999999987788899999964
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.026 Score=45.62 Aligned_cols=211 Identities=15% Similarity=0.142 Sum_probs=100.3
Q ss_pred eeEEeeec---ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 12 QALLFARQ---NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 12 ~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
.+++|... +.++..++..++ ...+.-.+.........++|+.+.+ +-......++-.|+++.+....+
T Consensus 48 ~kllF~s~~dg~~nly~lDL~t~----~i~QLTdg~g~~~~g~~~s~~~~~~-----~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLATG----EITQLTDGPGDNTFGGFLSPDDRAL-----YYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETTT-----EEEE---SS-B-TTT-EE-TTSSEE-----EEEETTTEEEEEETTT--EEEEE
T ss_pred CEEEEEeccCCCcceEEEEcccC----EEEECccCCCCCccceEEecCCCeE-----EEEECCCeEEEEECCcCcEEEEE
Confidence 56777654 567777777666 3333333322323356777887763 22234467888899888876666
Q ss_pred ecCCcce--EEE--cCCCCEEEEEec----------------------CCeEEEEeCCCCCCCcceEEEecCCccceEEE
Q 024185 89 RLRGRPT--VAF--DQQGLVFAVAME----------------------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI 142 (271)
Q Consensus 89 ~~~~~~~--~~~--~~~~~~l~~~~~----------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 142 (271)
..+.... ..| +.|+..++-.-. ...|.-.|+.+++. ...+ .....+..+
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~----~~v~-~~~~wlgH~ 193 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER----KVVF-EDTDWLGHV 193 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E----EEEE-EESS-EEEE
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce----eEEE-ecCccccCc
Confidence 6554332 344 445665543211 12466667777664 2222 234567889
Q ss_pred EEcC-CCcEEEEEec------CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEe-----cCCCcEEEEEcC
Q 024185 143 KFSN-DGKSMLLTTT------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG-----SGDGTLHAWNIN 210 (271)
Q Consensus 143 ~~s~-~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~dg~i~iwd~~ 210 (271)
.|+| |..+|+.|-+ |.+|.+.+.. +...+.+..+.....+..=-|.|||..+..- +.+..|.-+|+.
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 9999 4555666543 3345555533 3334444333333345556789999977642 224467788888
Q ss_pred CceeEEEecCCcceeEEEEEecCCcEEEE
Q 024185 211 TRNEVACWNGNIGVVACLKWAPRRAMFVA 239 (271)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 239 (271)
+++....... .+...+--++||++++-
T Consensus 273 t~~~~~~~~~--p~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 273 TGERRRLMEM--PWCSHFMSSPDGKLFVG 299 (386)
T ss_dssp T--EEEEEEE---SEEEEEE-TTSSEEEE
T ss_pred CCCceEEEeC--CceeeeEEcCCCCEEEe
Confidence 8765443221 23345666888887754
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00054 Score=60.89 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=73.7
Q ss_pred CCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeE
Q 024185 147 DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVA 226 (271)
Q Consensus 147 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 226 (271)
.+..++.|+..|.+-..|+... .-.-..+.....+|++++|+.+|++++.|-.+|.|.+||+..++.++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 4556888998999999887643 111122233336699999999999999999999999999999999998877666555
Q ss_pred EE---EEecCCcEEEEeCCeEEEEcCC
Q 024185 227 CL---KWAPRRAMFVAASSVLSFWIPN 250 (271)
Q Consensus 227 ~~---~~s~~~~~l~~~~~~v~iw~~~ 250 (271)
++ .+..++..+.++...-.+|.+.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gsf~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGSFWKLV 203 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCceEEEE
Confidence 44 3444566777776222266553
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.018 Score=47.28 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=78.7
Q ss_pred cceEEEcCCCCEEEEEe-----------cCC-eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeE
Q 024185 93 RPTVAFDQQGLVFAVAM-----------EAG-AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI 160 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~-----------~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 160 (271)
...++|.++|+.+++-. ..+ .|.+++-.++.-.......+.........+++.++| |++++.. .|
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~-~i 92 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP-DI 92 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC-eE
Confidence 45589999999766642 223 777776543221111122333333456889999988 4444444 44
Q ss_pred EEE-ECCCC-----e--EEE-EeecCC--CCCceeeEEECCCCCEEEEecCC-------------------CcEEEEEcC
Q 024185 161 YVL-DAYGG-----E--KRC-GFSLEP--SPNTNTEATFTPDGQYVVSGSGD-------------------GTLHAWNIN 210 (271)
Q Consensus 161 ~~~-d~~~~-----~--~~~-~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-------------------g~i~iwd~~ 210 (271)
..+ |.... + .+. .+.... .......+.|.|||.+.++-+.. |.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 444 44211 2 111 122210 11236679999999876654421 445666665
Q ss_pred CceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 211 TRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
.++....-.++. ....++|+|+|+++++-.
T Consensus 173 g~~~e~~a~G~r-np~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGKLRVVAHGFQ-NPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCeEEEEecCcC-CCccceECCCCCEEEEcc
Confidence 544322223333 346899999999877654
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.017 Score=50.04 Aligned_cols=174 Identities=6% Similarity=-0.045 Sum_probs=87.4
Q ss_pred ceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecCC-----eEEEEeCCCCCCCcceEEEecCCccceEEEEE
Q 024185 72 LEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEAG-----AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF 144 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (271)
..+..||..++.....-+.. ........-+++..+.|+.++ .+..||..+.+..... .+.........+
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~--~mp~~r~~~~~~-- 395 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP--DMPIALSSYGMC-- 395 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC--CCCcccccccEE--
Confidence 34677888766532211111 111122233677777787653 4888998876641111 111111111112
Q ss_pred cCCCcEEEEEecC-----------------------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC
Q 024185 145 SNDGKSMLLTTTN-----------------------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 201 (271)
Q Consensus 145 s~~~~~l~~~~~d-----------------------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 201 (271)
.-+|+..+.|+.+ ..+..||..+.+-...-...... .......-+++..+.|+.+
T Consensus 396 ~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r--~~~~~~~~~~~IYv~GG~~ 473 (557)
T PHA02713 396 VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT--IRPGVVSHKDDIYVVCDIK 473 (557)
T ss_pred EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc--ccCcEEEECCEEEEEeCCC
Confidence 2257777777754 24777887766532211111111 1111122356666777654
Q ss_pred ------CcEEEEEcCC-ce--eEEEecCCcceeEEEEEecCCcEEEEeC--C--eEEEEcCCCCC
Q 024185 202 ------GTLHAWNINT-RN--EVACWNGNIGVVACLKWAPRRAMFVAAS--S--VLSFWIPNPSS 253 (271)
Q Consensus 202 ------g~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~--~v~iw~~~~~~ 253 (271)
..+..||..+ .+ .+..++........+. -+|++.+.|+ + .+..||+.+.+
T Consensus 474 ~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 474 DEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcCccccc
Confidence 2467899886 33 3334433322222222 2677778876 3 58888887765
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.012 Score=38.49 Aligned_cols=85 Identities=13% Similarity=0.158 Sum_probs=56.1
Q ss_pred eEEEEEcC---CC-cEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee
Q 024185 139 VCDIKFSN---DG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 214 (271)
Q Consensus 139 v~~~~~s~---~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 214 (271)
|+++++.. || +.|++|+.|..|++|+- .+.+..+..... +.+++-... ..++.+..+|+|-+|+-. +.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~---v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDK---VTSLCSLGG-GRFAYALANGTVGVYDRS--QR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccc---eEEEEEcCC-CEEEEEecCCEEEEEeCc--ce
Confidence 45565544 32 57999999999999973 466666654443 767776665 568889999999999863 33
Q ss_pred EEEecCCcceeEEEEEec
Q 024185 215 VACWNGNIGVVACLKWAP 232 (271)
Q Consensus 215 ~~~~~~~~~~v~~~~~s~ 232 (271)
+...+.- ..+.++.+..
T Consensus 74 lWRiKSK-~~~~~~~~~D 90 (111)
T PF14783_consen 74 LWRIKSK-NQVTSMAFYD 90 (111)
T ss_pred eeeeccC-CCeEEEEEEc
Confidence 3444322 2355665543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.042 Score=44.48 Aligned_cols=174 Identities=13% Similarity=0.091 Sum_probs=84.5
Q ss_pred hhccCceEEEEEecCcceeEEEecCC-cceEEEcCCC-CEEEEEec---CC-eEEEEeCCCCCCCcceEEEecCC--ccc
Q 024185 67 LLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQG-LVFAVAME---AG-AIKLFDSRSYDKGPFDTFLVGGD--TAE 138 (271)
Q Consensus 67 s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~l~~~~~---d~-~i~i~d~~~~~~~~~~~~~~~~~--~~~ 138 (271)
.+-....|.--|+.+|+....+.... ...+.|+|.. ..|+.|-+ +. .-+||-+++.... ...+..+ ...
T Consensus 163 ~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~---~~~v~~~~~~e~ 239 (386)
T PF14583_consen 163 EARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN---VKKVHRRMEGES 239 (386)
T ss_dssp HC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS---TTEE
T ss_pred hhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc---ceeeecCCCCcc
Confidence 33344566677888888766665443 3458888854 55666543 11 1255655433221 1111112 234
Q ss_pred eEEEEEcCCCcEEEEEec-----CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC------------
Q 024185 139 VCDIKFSNDGKSMLLTTT-----NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD------------ 201 (271)
Q Consensus 139 v~~~~~s~~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------ 201 (271)
+..=-|.|||..+..-+. +..|.-+|+.+++........ ....+-.++||++++-=+.|
T Consensus 240 ~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~ 315 (386)
T PF14583_consen 240 VGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYK 315 (386)
T ss_dssp EEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--------------
T ss_pred cccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC----ceeeeEEcCCCCEEEecCCCCCccccccccce
Confidence 555679999998776432 446777888887654433221 14456678999987643332
Q ss_pred ----CcEEEEEcCCceeEEEe---------cCCcc-eeEEEEEecCCcEEEEeC---CeEEEE
Q 024185 202 ----GTLHAWNINTRNEVACW---------NGNIG-VVACLKWAPRRAMFVAAS---SVLSFW 247 (271)
Q Consensus 202 ----g~i~iwd~~~~~~~~~~---------~~~~~-~v~~~~~s~~~~~l~~~~---~~v~iw 247 (271)
-.|+++++..++..... .++.. .-..+.|+|||++++-.| |...||
T Consensus 316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 14667788766543211 11111 125689999999888776 554444
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00021 Score=52.45 Aligned_cols=141 Identities=13% Similarity=0.068 Sum_probs=83.2
Q ss_pred EEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC-eEEEEeecCCCCCce
Q 024185 105 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTN 183 (271)
Q Consensus 105 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v 183 (271)
+..-+.+|.|.-++++..+.. .....-+.....- -.-+..++.|+.+|.|++|..... .....+...... ..
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s---~rse~~~~e~~~v---~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~-i~ 105 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKES---CRSERFIDEGQRV---VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES-ID 105 (238)
T ss_pred hccccCCcccccchhhhhhhh---hhhhhhhhcceee---cccCceEEeecccceEEEecCCccchHHHhhhccccc-ce
Confidence 334456777877777654421 1111111111111 123456899999999999987521 111111111111 11
Q ss_pred eeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc-ceeEEEEEecCCcEEEEe--C--CeEEEEcCCCC
Q 024185 184 TEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI-GVVACLKWAPRRAMFVAA--S--SVLSFWIPNPS 252 (271)
Q Consensus 184 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~--~--~~v~iw~~~~~ 252 (271)
..+.--.++.+..+++.+|.|+.|++..++.+...-.|. .++.....+..++.++.+ | ..++.|++...
T Consensus 106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 106 LGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 112223345678889999999999999888887777676 556666666667777776 4 55888887654
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0012 Score=36.07 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=29.8
Q ss_pred ccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 136 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 136 ~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
...|.+++|+|...++|.++.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 357999999999999999999999999998 5543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00083 Score=49.41 Aligned_cols=139 Identities=12% Similarity=0.014 Sum_probs=77.1
Q ss_pred hhhhccCceEEEEEecCcceeEEE-ecCCcce-EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEE-ecCCccceEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGIL-RLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL-VGGDTAEVCD 141 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~ 141 (271)
+..-+.||.++-++++..+.-..- ..+ .+ .....-+..+++|+.+|.|++|....... ... ...-...+.+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~--~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~----~~d~~~s~~e~i~~ 106 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFI--DEGQRVVTASAKLMVGTSDGAVYVFNWNLEGA----HSDRVCSGEESIDL 106 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhh--hcceeecccCceEEeecccceEEEecCCccch----HHHhhhccccccee
Confidence 345566777777766543311100 011 11 22223356799999999999999873221 111 1111122222
Q ss_pred -EEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEe--cCCCcEEEEEcC
Q 024185 142 -IKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG--SGDGTLHAWNIN 210 (271)
Q Consensus 142 -~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~ 210 (271)
+.-..++.+..+++.||.|+.|+..-++.+.....|.. ........+..+++++.+ +.|..++.|++.
T Consensus 107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-ESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccccccceeEEeccCCceeeeccccCceeeeeccccC-CCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 22333566788899999999999987777665555542 113334444455555555 556666666664
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.009 Score=49.15 Aligned_cols=124 Identities=15% Similarity=0.185 Sum_probs=68.9
Q ss_pred ecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCC------CCCceeeEEEC-----CCC---CEEEE
Q 024185 132 VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP------SPNTNTEATFT-----PDG---QYVVS 197 (271)
Q Consensus 132 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------~~~~v~~~~~~-----~~~---~~l~~ 197 (271)
+....++|++++.|.= -++++|..+|.+.+.|+|....+..-.... ....++++.|+ .|+ -.+++
T Consensus 82 ~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 3344688999999854 479999999999999999888877633322 22457777775 233 47888
Q ss_pred ecCCCcEEEEEcC--C-ceeEE----EecCCcceeEEEE-EecC---------------------CcEEEEeC-CeEEEE
Q 024185 198 GSGDGTLHAWNIN--T-RNEVA----CWNGNIGVVACLK-WAPR---------------------RAMFVAAS-SVLSFW 247 (271)
Q Consensus 198 ~~~dg~i~iwd~~--~-~~~~~----~~~~~~~~v~~~~-~s~~---------------------~~~l~~~~-~~v~iw 247 (271)
|...|.+.+|.+. . +.... ....+.++|..+. ++.+ ..+++.++ ..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999999774 1 21111 1123445554444 2211 12455555 889999
Q ss_pred cCCCCCCCc
Q 024185 248 IPNPSSNST 256 (271)
Q Consensus 248 ~~~~~~~~~ 256 (271)
...+.+...
T Consensus 241 ~~~~~k~~~ 249 (395)
T PF08596_consen 241 KPPKSKGAH 249 (395)
T ss_dssp -TT---EEE
T ss_pred eCCCCcccc
Confidence 887766433
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.055 Score=45.80 Aligned_cols=118 Identities=13% Similarity=0.166 Sum_probs=72.4
Q ss_pred CCccceEEEEEcCC----CcEEEEEecCCeEEEEECC-----CCeEEEEeecCC---CCCceeeEEECCCCCEEEEecCC
Q 024185 134 GDTAEVCDIKFSND----GKSMLLTTTNNNIYVLDAY-----GGEKRCGFSLEP---SPNTNTEATFTPDGQYVVSGSGD 201 (271)
Q Consensus 134 ~~~~~v~~~~~s~~----~~~l~~~~~d~~i~~~d~~-----~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d 201 (271)
+....|..+.|.|- -..+++.-....|.+|.+. .++.+..-..+- -+.--..+.|+|....|+.-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 34467999999994 3245555667899999874 223322211111 11112347899998888765554
Q ss_pred CcEEEEEcCC--ceeEEEecCCcceeEEEEEecCCcEEEEeC-C--eEEEEcCCCC
Q 024185 202 GTLHAWNINT--RNEVACWNGNIGVVACLKWAPRRAMFVAAS-S--VLSFWIPNPS 252 (271)
Q Consensus 202 g~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~--~v~iw~~~~~ 252 (271)
..-.+++++. .+....+. ..+.|.|.+|.+||+.|+.+- . .-++||-...
T Consensus 134 dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred ceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 3334555543 33333444 456799999999999877764 2 3678886544
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.052 Score=41.63 Aligned_cols=153 Identities=12% Similarity=0.179 Sum_probs=88.6
Q ss_pred cceEEEcCCCC-EEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe--
Q 024185 93 RPTVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-- 169 (271)
Q Consensus 93 ~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-- 169 (271)
+..++|+|+.+ ++++....+.|..++.+ ++. +....+.+ .+..-.+++..++.++++.-.++.+.++++....
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v--lr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV--LRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT---E--EEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE--EEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 56699999866 55555667888888874 443 45555655 3568889998888777766668999999884321
Q ss_pred ----EEEEee--cC-CCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC---ceeEEEe--------cCCcceeEEEEEe
Q 024185 170 ----KRCGFS--LE-PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT---RNEVACW--------NGNIGVVACLKWA 231 (271)
Q Consensus 170 ----~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~--------~~~~~~v~~~~~s 231 (271)
....+. .. .....+..++|+|.++.|+.+-+..-..+|.++. ...+... ......+.+++++
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence 112222 22 1223478899999988888887776666776653 2222211 1123457889999
Q ss_pred cCC-cEEEEeC--CeEEEEcC
Q 024185 232 PRR-AMFVAAS--SVLSFWIP 249 (271)
Q Consensus 232 ~~~-~~l~~~~--~~v~iw~~ 249 (271)
|.. ++++.++ ..+..+|.
T Consensus 180 p~t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 180 PRTGHLLILSDESRLLLELDR 200 (248)
T ss_dssp TTTTEEEEEETTTTEEEEE-T
T ss_pred CCCCeEEEEECCCCeEEEECC
Confidence 964 4444443 56777773
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.033 Score=48.18 Aligned_cols=174 Identities=7% Similarity=-0.036 Sum_probs=85.4
Q ss_pred eEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecC-----CeEEEEeCCCCCCCcceEEEecCCccceEEEEEc
Q 024185 73 EYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEA-----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS 145 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 145 (271)
.+..||..+.+....-... ........-+++.++.|+.+ ..+..||..+.+..... .+...... .+.+ .
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~lp~~r~~-~~~~-~ 387 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEP--PLIFPRYN-PCVV-N 387 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCC--CcCcCCcc-ceEE-E
Confidence 4667887766543221111 11111222366777777754 35778898876641111 11111111 1122 2
Q ss_pred CCCcEEEEEecC------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC--------cEEEEEcCC
Q 024185 146 NDGKSMLLTTTN------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG--------TLHAWNINT 211 (271)
Q Consensus 146 ~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------~i~iwd~~~ 211 (271)
-+++..+.|+.+ ..+..||..+++-...-......... .+...+++..+.|+.++ .+.+||..+
T Consensus 388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 388 VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG--CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc--eEEEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 356777777632 46888998776543221111111111 12223566667776432 388899877
Q ss_pred ceeEEE--ecCCcceeEEEEEecCCcEEEEeC-------CeEEEEcCCCCCC
Q 024185 212 RNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSSN 254 (271)
Q Consensus 212 ~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~~ 254 (271)
++-... +.........+ ..++++++.|+ +.+.+||+++.+=
T Consensus 466 ~~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 466 NKWTELSSLNFPRINASLC--IFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CceeeCCCCCcccccceEE--EECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 654321 11111111112 22677777775 3588999887643
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.12 Score=44.65 Aligned_cols=183 Identities=9% Similarity=0.021 Sum_probs=110.5
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCC---cc---e-------EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRG---RP---T-------VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL 131 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~---~-------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 131 (271)
+..++.++.|+-.|.++|+.+..+.... .. + +++ .+..++.++.++.+..+|.++++. ...
T Consensus 72 vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~----~W~ 145 (527)
T TIGR03075 72 MYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKV----VWS 145 (527)
T ss_pred EEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCE----Eee
Confidence 3455667889999999999887765421 11 1 122 234677788899999999999986 333
Q ss_pred ec--CCccceEEEEEcC---CCcEEEEEec------CCeEEEEECCCCeEEEEeecCCCC--------------------
Q 024185 132 VG--GDTAEVCDIKFSN---DGKSMLLTTT------NNNIYVLDAYGGEKRCGFSLEPSP-------------------- 180 (271)
Q Consensus 132 ~~--~~~~~v~~~~~s~---~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~-------------------- 180 (271)
.. .+.. -..+.-+| ++ .++++.. +|.|.-+|.++|+.+.++..-...
T Consensus 146 ~~~~~~~~-~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 146 KKNGDYKA-GYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred cccccccc-cccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 22 1111 01111122 34 4555432 689999999999987765432110
Q ss_pred ---------Cce-eeEEECCCCCEEEEecCC-----C-----------cEEEEEcCCceeEEEecC--Ccc-------ee
Q 024185 181 ---------NTN-TEATFTPDGQYVVSGSGD-----G-----------TLHAWNINTRNEVACWNG--NIG-------VV 225 (271)
Q Consensus 181 ---------~~v-~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~--~~~-------~v 225 (271)
..+ ..++++|...+++.+..+ + +|.-.|+++|+..-.++. |.. ..
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 001 124677776666655422 2 677889999998776643 221 11
Q ss_pred EEEEEecCCc---EEEEeC--CeEEEEcCCCCCCC
Q 024185 226 ACLKWAPRRA---MFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 226 ~~~~~s~~~~---~l~~~~--~~v~iw~~~~~~~~ 255 (271)
.-+....+|+ .++.+. |.+.+.|-++++++
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 1222224665 666666 88999999999875
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.066 Score=46.55 Aligned_cols=182 Identities=11% Similarity=0.133 Sum_probs=98.6
Q ss_pred hhhhccC------ceEEEEEecCcceeEEEecCCcce-EEE-cCCCCEEEEEecCC-----eEEEEeCCCCCCCcceEEE
Q 024185 65 LVLLTTA------LEYGIFVLMLASFQGILRLRGRPT-VAF-DQQGLVFAVAMEAG-----AIKLFDSRSYDKGPFDTFL 131 (271)
Q Consensus 65 l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~ 131 (271)
.++||.| .++..||..+++....-+.....+ .+. .-+|...++|+.|| ++..||..+.+........
T Consensus 336 Yv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~ 415 (571)
T KOG4441|consen 336 YVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML 415 (571)
T ss_pred EEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC
Confidence 5678888 356678887776443222221111 111 23677888888886 5888999887762222111
Q ss_pred ecCCccceEEEE-EcCCCcEEEEEecC------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC--
Q 024185 132 VGGDTAEVCDIK-FSNDGKSMLLTTTN------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG-- 202 (271)
Q Consensus 132 ~~~~~~~v~~~~-~s~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-- 202 (271)
....... -.-+|+..++|+.+ .++..||..+++-...-.......... ++ .-++...+.|+.|+
T Consensus 416 -----~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~ 488 (571)
T KOG4441|consen 416 -----TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTS 488 (571)
T ss_pred -----cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCC
Confidence 1222222 22357777888754 457788877765433211111111111 22 23677778888776
Q ss_pred ---cEEEEEcCCceeEEE--ecCCcceeEEEEEecCCcEEEEeC-------CeEEEEcCCCCCCC
Q 024185 203 ---TLHAWNINTRNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSSNS 255 (271)
Q Consensus 203 ---~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~~~ 255 (271)
++..||..+.+-... +......+. ++ .-++.+.+.|+ +++..||..+.+=.
T Consensus 489 ~~~~VE~ydp~~~~W~~v~~m~~~rs~~g-~~-~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 489 ALSSVERYDPETNQWTMVAPMTSPRSAVG-VV-VLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred ccceEEEEcCCCCceeEcccCcccccccc-EE-EECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 377788877654332 222222221 22 22456666664 45889988776543
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.16 Score=45.62 Aligned_cols=190 Identities=10% Similarity=0.013 Sum_probs=113.3
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCc--------ce--EEEc----------------CCCCEEEEEecCCeEEEEe
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGR--------PT--VAFD----------------QQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~--~~~~----------------~~~~~l~~~~~d~~i~i~d 118 (271)
+..++.++.|.-.|.++|+.+..+..... .| +++. ..+.+++.++.|+.+.-.|
T Consensus 197 lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALD 276 (764)
T TIGR03074 197 LYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALD 276 (764)
T ss_pred EEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEE
Confidence 44567788898899999998877754321 11 2221 1345788888999999999
Q ss_pred CCCCCCCcceEEEecCCccce-------------EEEEEcC--CCcEEEEEec----------CCeEEEEECCCCeEEEE
Q 024185 119 SRSYDKGPFDTFLVGGDTAEV-------------CDIKFSN--DGKSMLLTTT----------NNNIYVLDAYGGEKRCG 173 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v-------------~~~~~s~--~~~~l~~~~~----------d~~i~~~d~~~~~~~~~ 173 (271)
.++++. ...+. ..+.+ ..+.-.| .+..+++|+. +|.|+-+|.++|+.+..
T Consensus 277 A~TGk~----~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 277 ADTGKL----CEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred CCCCCE----EEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 999986 33321 11111 1112222 1345666642 68899999999999887
Q ss_pred eecCC---------C------CCce-eeEEECCCCCEEEEec------------------CCCcEEEEEcCCceeEEEec
Q 024185 174 FSLEP---------S------PNTN-TEATFTPDGQYVVSGS------------------GDGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 174 ~~~~~---------~------~~~v-~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~ 219 (271)
+.... . ...+ ...+++|....++.+. ..++|.-.|.++|+..-.++
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ 431 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence 65310 0 0001 2345566555544321 12467778889999877664
Q ss_pred C--Ccc-------eeEEEEEec-CCc---EEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 220 G--NIG-------VVACLKWAP-RRA---MFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 220 ~--~~~-------~v~~~~~s~-~~~---~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
. |.- ...-+.+.. +|+ .++.++ |.+.+.|-++++.+-..+
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 3 211 111122322 553 666666 889999999998776543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.085 Score=42.41 Aligned_cols=134 Identities=14% Similarity=0.136 Sum_probs=81.7
Q ss_pred ceEEEEEecCc----ceeEEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEc
Q 024185 72 LEYGIFVLMLA----SFQGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS 145 (271)
Q Consensus 72 g~i~iwd~~~~----~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 145 (271)
|.+.++++... ..+..+... ..++.++.+-+.+|+++. ++.|.+|++...+. ........ ....+.++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~-l~~~~~~~-~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKT-LLKKAFYD-SPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSS-EEEEEEE--BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCccc-chhhheec-ceEEEEEEecc
Confidence 99999999884 222222111 223333333344555555 58999999988771 12222222 22356666555
Q ss_pred CCCcEEEEEecCCeEEEEECCC-CeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC
Q 024185 146 NDGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210 (271)
Q Consensus 146 ~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 210 (271)
+++++.|.....+.++..+. ++.+..+.....+.+++++.+-++++.++.+..+|.+.++...
T Consensus 139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 55899998878888775443 4434444444445668888888777789999999999999876
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.16 Score=45.32 Aligned_cols=201 Identities=7% Similarity=-0.022 Sum_probs=102.2
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecC------CeEEEEeCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEA------GAIKLFDSR 120 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~ 120 (271)
.+....+||++++++...=..|+..-.+++.|+.+++.+...-......++|.+|++.|+....+ ..|+.+++.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 46667889999986552222344455688889988864322211112449999999877766432 368888888
Q ss_pred CCCCCcceEEEecCCccceE-EEEEcCCCcEEEEEec---CCeEEEEECC--CCeEEEEeecCCCCCceeeEEECCCCCE
Q 024185 121 SYDKGPFDTFLVGGDTAEVC-DIKFSNDGKSMLLTTT---NNNIYVLDAY--GGEKRCGFSLEPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~---d~~i~~~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 194 (271)
++...-...+. ....... ....+.++++++..+. ++.+.+++.. +++....+. ..... ...+. +..+.+
T Consensus 208 t~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~-~~~~~-~~~~~l 282 (686)
T PRK10115 208 TPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP-RRKDH-EYSLD-HYQHRF 282 (686)
T ss_pred CChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE-CCCCC-EEEEE-eCCCEE
Confidence 77321112222 2222232 3334448887765543 4678898853 333222222 22221 22222 233333
Q ss_pred EEEecC---CCcEEEEEcCCceeEEEecCC--cceeEEEEEecCCcEEEEeC--C--eEEEEcCCCCC
Q 024185 195 VVSGSG---DGTLHAWNINTRNEVACWNGN--IGVVACLKWAPRRAMFVAAS--S--VLSFWIPNPSS 253 (271)
Q Consensus 195 l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~--~--~v~iw~~~~~~ 253 (271)
.+.... ...|...++........+-.+ ...+..+.+..+ .++++.. + .+.+++..+++
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~ 349 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTRE 349 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCc
Confidence 333322 223444455421122233233 236788888733 3444433 3 36677765433
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.077 Score=41.05 Aligned_cols=151 Identities=18% Similarity=0.189 Sum_probs=87.4
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE-EecCCcceEEEcCCCCEEEEEecCCeEEEEe-CCCCCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI-LRLRGRPTVAFDQQGLVFAVAMEAGAIKLFD-SRSYDK 124 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d-~~~~~~ 124 (271)
.+...+++++++.+++ ....++.-.+|-...+..... +.+......+|++++...+....+....++. ...++.
T Consensus 25 ~~~s~AvS~dg~~~A~----v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAA----VSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEE----EEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 5777999999987443 222333344444443433333 3555666689999987766666566666663 333332
Q ss_pred CcceEEEecCCccceEEEEEcCCCcEEEEEe---cCCeEEEEECC---CCeEEE---EeecC-CCCCceeeEEECCCCCE
Q 024185 125 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT---TNNNIYVLDAY---GGEKRC---GFSLE-PSPNTNTEATFTPDGQY 194 (271)
Q Consensus 125 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~~~d~~---~~~~~~---~~~~~-~~~~~v~~~~~~~~~~~ 194 (271)
.+... ....-...|..+++||||..++... .++.|.+--+. .+.... ..... .....+..+.|.+++.+
T Consensus 101 ~~~~v-~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 101 EPVEV-DWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred eeEEe-cccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 11111 1111112899999999999988766 25677776542 220111 01111 11234889999999998
Q ss_pred EEEecCCC
Q 024185 195 VVSGSGDG 202 (271)
Q Consensus 195 l~~~~~dg 202 (271)
++.+...+
T Consensus 180 ~V~~~~~~ 187 (253)
T PF10647_consen 180 VVLGRSAG 187 (253)
T ss_pred EEEeCCCC
Confidence 87766543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.11 Score=41.96 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=85.1
Q ss_pred CcceEEEcCCCCEEEEEecCCe------EEEEeCCCC--CC---CcceEEEecCCcc--------ceEEEEEcCCCcEEE
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGA------IKLFDSRSY--DK---GPFDTFLVGGDTA--------EVCDIKFSNDGKSML 152 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~------i~i~d~~~~--~~---~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~ 152 (271)
+...+.+.+++..+++.+++|. ++.+++... .. .......+....+ ..-++++.++|.+++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~i 100 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWI 100 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEE
Confidence 3455888866666677777777 665555431 11 0111111222111 334778877887777
Q ss_pred EEecC------CeEEEEECCCCeEEEEeec-------------CCCCCceeeEEECCCCCEEEEecC-----CC------
Q 024185 153 LTTTN------NNIYVLDAYGGEKRCGFSL-------------EPSPNTNTEATFTPDGQYVVSGSG-----DG------ 202 (271)
Q Consensus 153 ~~~~d------~~i~~~d~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~-----dg------ 202 (271)
+.-.+ ..|..++.. |+....+.. ........+++++|||+.|+++.+ |+
T Consensus 101 s~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~ 179 (326)
T PF13449_consen 101 SSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPD 179 (326)
T ss_pred EeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccc
Confidence 66556 789999866 665544421 112245788999999996665433 22
Q ss_pred -----cEEEEEcCC-cee----EEEecC-----CcceeEEEEEecCCcEEEE
Q 024185 203 -----TLHAWNINT-RNE----VACWNG-----NIGVVACLKWAPRRAMFVA 239 (271)
Q Consensus 203 -----~i~iwd~~~-~~~----~~~~~~-----~~~~v~~~~~s~~~~~l~~ 239 (271)
.|..||..+ ++. .+.+.. ....++.+.+-+++++|+.
T Consensus 180 ~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 180 NGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 234455544 322 223332 3467899999999997764
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.016 Score=48.01 Aligned_cols=139 Identities=11% Similarity=0.056 Sum_probs=89.1
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCC-------EEEEEecCCeEEEEeCCCCCCCcceEEEecCCcc
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGL-------VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA 137 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 137 (271)
+..|+....++-.|++.|+.+.....+.-..+.+.|+.+ .-++|-.+..|.-.|.+-... .........
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN----Ki~v~esKd 558 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN----KIKVVESKD 558 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCC----ceeeeeehh
Confidence 447777888888899999999999888766888888542 123444456666667654332 111111222
Q ss_pred ceEEEEEcC----CCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC
Q 024185 138 EVCDIKFSN----DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210 (271)
Q Consensus 138 ~v~~~~~s~----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 210 (271)
.++.-.||. ..-++++++..|.|++||.-.-+....+.+-... |..+..+.+|+++++.+.. .+.+-|++
T Consensus 559 Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~a--Ik~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 559 YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDA--IKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred ccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccc--eeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 333333333 3457999999999999995333322334444433 8889999999998877754 56666653
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0032 Score=34.35 Aligned_cols=33 Identities=12% Similarity=0.332 Sum_probs=29.1
Q ss_pred CceeeEEECCCCCEEEEecCCCcEEEEEcCCcee
Q 024185 181 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 214 (271)
Q Consensus 181 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 214 (271)
..|..++|+|...++|.++.+|.|.++.+ +++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 45889999999999999999999999998 5554
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.094 Score=40.59 Aligned_cols=202 Identities=8% Similarity=0.054 Sum_probs=126.8
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC---cceEEEcCCCCEEEEEecCCeEEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG---RPTVAFDQQGLVFAVAMEAGAIKLF 117 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~i~ 117 (271)
..+....++++.|+|+.+. |.+......-.++=...|+.+.+++... ...+.+..++++.++--.++.++++
T Consensus 81 i~g~~~nvS~LTynp~~rt-----LFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 81 ILGETANVSSLTYNPDTRT-----LFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLF 155 (316)
T ss_pred cccccccccceeeCCCcce-----EEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEE
Confidence 4555667999999999998 5566666666677666889888886553 4458999888888888888888888
Q ss_pred eCCCCCC--Ccc-eEEEec--CC-ccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE-E--EEeecCCCC-----Cce
Q 024185 118 DSRSYDK--GPF-DTFLVG--GD-TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-R--CGFSLEPSP-----NTN 183 (271)
Q Consensus 118 d~~~~~~--~~~-~~~~~~--~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~--~~~~~~~~~-----~~v 183 (271)
.+..... ... ....+. .+ ....-.++|.|..+.|+.+-+..-+.+|....... + +....+... ..+
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 7765432 000 022222 12 45678899999988898888877777776643221 0 100111100 236
Q ss_pred eeEEECCC-CCEEEEecCCCcEEEEEcCCceeEEEecCCc---------ceeEEEEEecCCcEEEEeC-CeEEEEc
Q 024185 184 TEATFTPD-GQYVVSGSGDGTLHAWNINTRNEVACWNGNI---------GVVACLKWAPRRAMFVAAS-SVLSFWI 248 (271)
Q Consensus 184 ~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~-~~v~iw~ 248 (271)
.++.|++. +..++-+.+++.+.-.|.. |+.+..+.-+. -....++..++|.+-+++- +-...|.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnlfy~F~ 310 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNLFYRFT 310 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCcceecc
Confidence 66888864 5566667777777777764 55444432111 1235677787777555543 5444443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.34 Score=43.71 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=91.3
Q ss_pred EEEcCCC--CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC--------------Ce
Q 024185 96 VAFDQQG--LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN--------------NN 159 (271)
Q Consensus 96 ~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------~~ 159 (271)
+.|+.+. ..++++. .+.+.+..+..-+. +...++.- ......+++.+....+++.+.- ..
T Consensus 676 c~f~s~a~~d~l~~~~-~~~l~i~tid~iqk--l~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~ 751 (1096)
T KOG1897|consen 676 CPFNSDAYPDSLASAN-GGALTIGTIDEIQK--LHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSF 751 (1096)
T ss_pred cccccccCCceEEEec-CCceEEEEecchhh--cceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEE
Confidence 4444332 3455554 45677777665443 22333322 2456667777744444443321 24
Q ss_pred EEEEECCCCeEEEEeecCCCC--CceeeEEECCC-CCEEEEec----------CCCcEEEEEcCCceeEEEecCC--cce
Q 024185 160 IYVLDAYGGEKRCGFSLEPSP--NTNTEATFTPD-GQYVVSGS----------GDGTLHAWNINTRNEVACWNGN--IGV 224 (271)
Q Consensus 160 i~~~d~~~~~~~~~~~~~~~~--~~v~~~~~~~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~--~~~ 224 (271)
++++|-.+.+.+...+..... ..+.++.|..| +.+++.|. ..|.|.++.+..++.++....+ .+.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 677776666655543332222 33555668777 67777764 2478889888775555544322 234
Q ss_pred eEEEEEecCCcEEEEeCCeEEEEcCCCCCCCcCCC
Q 024185 225 VACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 225 v~~~~~s~~~~~l~~~~~~v~iw~~~~~~~~~~~~ 259 (271)
+.++.- -+|+++|.-+..|++|+..+++.+..+.
T Consensus 832 v~aL~~-fngkllA~In~~vrLye~t~~~eLr~e~ 865 (1096)
T KOG1897|consen 832 VYALVE-FNGKLLAGINQSVRLYEWTTERELRIEC 865 (1096)
T ss_pred eeehhh-hCCeEEEecCcEEEEEEccccceehhhh
Confidence 444432 2688888888999999999986555444
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.17 Score=40.07 Aligned_cols=117 Identities=14% Similarity=0.139 Sum_probs=62.9
Q ss_pred cCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe-EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEc-C
Q 024185 133 GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI-N 210 (271)
Q Consensus 133 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~ 210 (271)
..-.+.+..+.-++||+++++++.-....-||--... ..+... . ...+.++.|+|++...+.+ ..|.|+.=+. .
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~-~--~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN-S--SRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---S--SS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccC-c--cceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence 3445778899999999988888766666777743211 111111 1 2349999999998866644 7788888772 2
Q ss_pred CceeEEE----ecCCcceeEEEEEecCCcEEEEeCCeEEEEcCCCCC
Q 024185 211 TRNEVAC----WNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSS 253 (271)
Q Consensus 211 ~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~~v~iw~~~~~~ 253 (271)
..+.-.. .......+..++|.+++...++|++-..+...+.++
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGk 263 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGK 263 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTS
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCc
Confidence 2222221 112233478999999999888887334445555554
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.37 Score=43.44 Aligned_cols=150 Identities=14% Similarity=0.144 Sum_probs=90.0
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCc----------c----eEEEcC--CCCEEEEEec----------CCeEEEEe
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGR----------P----TVAFDQ--QGLVFAVAME----------AGAIKLFD 118 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~----~~~~~~--~~~~l~~~~~----------d~~i~i~d 118 (271)
++.++.|+.+.-.|.++|+....+...+. . ...-.| .+..+++|+. +|.|+-+|
T Consensus 263 V~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~D 342 (764)
T TIGR03074 263 IILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFD 342 (764)
T ss_pred EEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEE
Confidence 55678899999999999998876643210 0 011112 1345666642 58899999
Q ss_pred CCCCCCCcceEEEecC------------------CccceEEEEEcCCCcEEEEEe------------------cCCeEEE
Q 024185 119 SRSYDKGPFDTFLVGG------------------DTAEVCDIKFSNDGKSMLLTT------------------TNNNIYV 162 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~------------------~~~~v~~~~~s~~~~~l~~~~------------------~d~~i~~ 162 (271)
.++++. ...... ....-...++.|+...++.+. ..+.|.-
T Consensus 343 a~TGkl----~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 343 VNTGAL----VWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred CCCCcE----eeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 999986 332210 000112344555444444322 1356777
Q ss_pred EECCCCeEEEEeecCCCC-------CceeeEEECC-CCC---EEEEecCCCcEEEEEcCCceeEEEe
Q 024185 163 LDAYGGEKRCGFSLEPSP-------NTNTEATFTP-DGQ---YVVSGSGDGTLHAWNINTRNEVACW 218 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~-------~~v~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~ 218 (271)
.|.++|+....++...+. ....-+.+.. +|+ .++.++.+|.+.+.|-++|+.+...
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 888899988777642221 1111123333 563 7889999999999999999987754
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.15 Score=44.40 Aligned_cols=109 Identities=14% Similarity=0.212 Sum_probs=70.0
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEc--CCCcEEEEEecCCeEEEEECC-------
Q 024185 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS--NDGKSMLLTTTNNNIYVLDAY------- 166 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~d~~i~~~d~~------- 166 (271)
+.-+.-++.-++-+...++.|||.+.+.. .....+ ...+.|.++.|. |+|+.+++.+....|.+|.-.
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~l--E~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVL--EYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEE--EEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 55555455444444456899999988764 222223 346789999986 589999999999999998642
Q ss_pred --CCeEEEEeecCCC-CCceeeEEECCCCCEEEEecCCCcEEEEEc
Q 024185 167 --GGEKRCGFSLEPS-PNTNTEATFTPDGQYVVSGSGDGTLHAWNI 209 (271)
Q Consensus 167 --~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 209 (271)
+...++.+..... +..|.+..|.++|.+++.++ +.+.|+|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1223444322211 13488899999997665443 46777764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.38 Score=43.44 Aligned_cols=171 Identities=10% Similarity=0.016 Sum_probs=105.6
Q ss_pred eEEEEEecCcceeEEEecCC------cceEEEcCC-CCEEEEEec----------CCeEEEEeCCC-CCCCcceEEEecC
Q 024185 73 EYGIFVLMLASFQGILRLRG------RPTVAFDQQ-GLVFAVAME----------AGAIKLFDSRS-YDKGPFDTFLVGG 134 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~-~~~l~~~~~----------d~~i~i~d~~~-~~~~~~~~~~~~~ 134 (271)
.++++|.++.+.+...+... +..+.|..| +.++++|.. .|.|.++.... ++.+......+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v-- 828 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV-- 828 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee--
Confidence 45666666655444333221 223567777 667777742 57888888877 33211222222
Q ss_pred CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC--c
Q 024185 135 DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT--R 212 (271)
Q Consensus 135 ~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~ 212 (271)
.+.+.++.-- +|+++| +-+..|++|++.+.+.++.-..+..+ +..+...-.|..++.|..-+++.+...+. |
T Consensus 829 -~Gav~aL~~f-ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~--~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg 902 (1096)
T KOG1897|consen 829 -KGAVYALVEF-NGKLLA--GINQSVRLYEWTTERELRIECNISNP--IIALDLQVKGDEIAVGDLMRSITLLQYKGDEG 902 (1096)
T ss_pred -ccceeehhhh-CCeEEE--ecCcEEEEEEccccceehhhhcccCC--eEEEEEEecCcEEEEeeccceEEEEEEeccCC
Confidence 2445554422 466554 44568999999888777765555554 77788888899999998888777665543 3
Q ss_pred eeEEEe-cCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCC
Q 024185 213 NEVACW-NGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP 251 (271)
Q Consensus 213 ~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~ 251 (271)
.....- .-+..+.+++.+-.+..++.+-. |.+.+-..++
T Consensus 903 ~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 903 NFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred ceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecC
Confidence 343322 34667888888887766665544 7777666554
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.055 Score=47.02 Aligned_cols=149 Identities=5% Similarity=-0.034 Sum_probs=75.8
Q ss_pred hhhhccCc-----eEEEEEecCcceeEE--EecCCcceEEEcCCCCEEEEEecC-----------------------CeE
Q 024185 65 LVLLTTAL-----EYGIFVLMLASFQGI--LRLRGRPTVAFDQQGLVFAVAMEA-----------------------GAI 114 (271)
Q Consensus 65 l~s~~~dg-----~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d-----------------------~~i 114 (271)
.+.||.++ .+..||..+++.... ++..........-+++..+.|+.+ ..+
T Consensus 355 YviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~v 434 (557)
T PHA02713 355 YAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKV 434 (557)
T ss_pred EEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceE
Confidence 44566543 477888877653321 111111111112367777777654 257
Q ss_pred EEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC------CeEEEEECCC-CeEE--EEeecCCCCCceee
Q 024185 115 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN------NNIYVLDAYG-GEKR--CGFSLEPSPNTNTE 185 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~~~d~~~-~~~~--~~~~~~~~~~~v~~ 185 (271)
..||.++.+...... +.. .....-...-+++..+.|+.+ ..+..||..+ .+-. ..+...... ...
T Consensus 435 e~YDP~td~W~~v~~--m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~--~~~ 508 (557)
T PHA02713 435 IRYDTVNNIWETLPN--FWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA--LHT 508 (557)
T ss_pred EEECCCCCeEeecCC--CCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc--cee
Confidence 789988776421111 111 111111122346666777653 2467898876 4432 222222211 211
Q ss_pred EEECCCCCEEEEecCCC--cEEEEEcCCceeEEEecCC
Q 024185 186 ATFTPDGQYVVSGSGDG--TLHAWNINTRNEVACWNGN 221 (271)
Q Consensus 186 ~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~ 221 (271)
+. -+++..++|+.+| .+..||..+.+-...-+.|
T Consensus 509 ~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 509 IL--HDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred EE--ECCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence 22 2678888998887 6777887766554433334
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.068 Score=43.89 Aligned_cols=141 Identities=14% Similarity=0.145 Sum_probs=86.4
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEE--EE
Q 024185 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR--CG 173 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~--~~ 173 (271)
+-|. |.+..+.+...|.+.-|.+..........+.. ...++|.++.||+|.+.+|+--.+.+|.+++....+.. ..
T Consensus 28 vFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm-~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 28 VFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDM-DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred eeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeee-cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 4443 33334444445667677665443222223333 24579999999999999999999999999997433322 22
Q ss_pred eecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEEEecCCcEEEEe
Q 024185 174 FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRAMFVAA 240 (271)
Q Consensus 174 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 240 (271)
.+.......|...+|+.+. -+|.....| +-+|-+.. .+.++..+.|+..|.-..|.|+-+.+.-+
T Consensus 106 ~~ck~k~~~IlGF~W~~s~-e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSST-EIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred HHhccCcceeEEEEEecCe-eEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 2223333448889998764 455544444 55555432 33445556777888888999988754444
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.17 Score=37.95 Aligned_cols=138 Identities=13% Similarity=0.052 Sum_probs=82.1
Q ss_pred cceEEeeEEecCCchhhhhhhhhhcc--------CceEEEEEecCcceeEEEecCCc-ceEEEcCCCCEEEEE-ecCCeE
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTT--------ALEYGIFVLMLASFQGILRLRGR-PTVAFDQQGLVFAVA-MEAGAI 114 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~--------dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~d~~i 114 (271)
+.+.+.--.+|+|++... +.+. .|.++.|-. .++.......-.+ +.++|+.+.+.++.- +.+-+|
T Consensus 108 knR~NDgkvdP~Gryy~G----tMad~~~~le~~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGG----TMADFGDDLEPIGGELYSWLA-GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCceeee----eeccccccccccccEEEEecc-CCCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 445666778899997433 1111 133333332 1111111111122 448999888766655 566788
Q ss_pred EEEe--CCCCCCC-cceEEEecCC----ccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEE
Q 024185 115 KLFD--SRSYDKG-PFDTFLVGGD----TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 187 (271)
Q Consensus 115 ~i~d--~~~~~~~-~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~ 187 (271)
..|| ..++... +...+.+... ....-.++...+|++.++.-..++|...|..+|+.+..+...... +++++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~q--itscc 260 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQ--ITSCC 260 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCc--eEEEE
Confidence 7787 5554431 1122333221 111223444667888888888899999999999999999888665 99999
Q ss_pred EC
Q 024185 188 FT 189 (271)
Q Consensus 188 ~~ 189 (271)
|-
T Consensus 261 Fg 262 (310)
T KOG4499|consen 261 FG 262 (310)
T ss_pred ec
Confidence 95
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.2 Score=38.54 Aligned_cols=153 Identities=14% Similarity=0.083 Sum_probs=94.5
Q ss_pred EEEcCCCCEEEEEecCC--eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEE
Q 024185 96 VAFDQQGLVFAVAMEAG--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG 173 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 173 (271)
+.|..++.++-+.+.-| .|+.+|+.+++. .....+... ----.+.... ++.....=.++...+||..+.+.+.+
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~--~~~~~l~~~-~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKV--LQSVPLPPR-YFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTTSSE--EEEEE-TTT---EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCCCcE--EEEEECCcc-ccceeEEEEC-CEEEEEEecCCeEEEEccccceEEEE
Confidence 78877888777777666 799999999874 333344321 1122333332 34444445689999999999999988
Q ss_pred eecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC--c---ceeEEEEEecCCcEEEEeC--CeEEE
Q 024185 174 FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN--I---GVVACLKWAPRRAMFVAAS--SVLSF 246 (271)
Q Consensus 174 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~~~~s~~~~~l~~~~--~~v~i 246 (271)
+..... + ..++ .|++.|+.......++++|..+.+....+.-. . ..++.+.|. +|.+.|-.= ..|..
T Consensus 126 ~~y~~E-G--WGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 126 FPYPGE-G--WGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EE-SSS-----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EecCCc-c--eEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 876543 2 2355 56777777777779999999887776665322 2 245667876 565555442 66888
Q ss_pred EcCCCCCCCcCC
Q 024185 247 WIPNPSSNSTDE 258 (271)
Q Consensus 247 w~~~~~~~~~~~ 258 (271)
-|+.+|++....
T Consensus 200 Idp~tG~V~~~i 211 (264)
T PF05096_consen 200 IDPETGKVVGWI 211 (264)
T ss_dssp EETTT-BEEEEE
T ss_pred EeCCCCeEEEEE
Confidence 888888765543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.14 Score=44.67 Aligned_cols=174 Identities=12% Similarity=0.127 Sum_probs=91.3
Q ss_pred ceEEEEEecCcceeEEEecC--Cc-ceEEEcCCCCEEEEEecC------CeEEEEeCCCCCCCcceEEEecCCccceEEE
Q 024185 72 LEYGIFVLMLASFQGILRLR--GR-PTVAFDQQGLVFAVAMEA------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI 142 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 142 (271)
..+..+|..++......... .. .+++.. ++...++|+.| .++..||..+.+...........+...+.
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~-- 377 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA-- 377 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE--
Confidence 46778888877543333222 22 223433 55777888877 36888999887752221111111111121
Q ss_pred EEcCCCcEEEEEecCC-----eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC------cEEEEEcCC
Q 024185 143 KFSNDGKSMLLTTTNN-----NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG------TLHAWNINT 211 (271)
Q Consensus 143 ~~s~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~iwd~~~ 211 (271)
.-+|...++|+.|| ++..||.++.+-...-......... -.-.-+|+..++|+.++ ++..||..+
T Consensus 378 --~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~--gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 378 --VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGH--GVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred --EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeee--EEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 12678888888875 4777877655432211111111011 11223677778887654 578888877
Q ss_pred ceeEE--EecCCcceeEEEEEecCCcEEEEeC--C-----eEEEEcCCCCCC
Q 024185 212 RNEVA--CWNGNIGVVACLKWAPRRAMFVAAS--S-----VLSFWIPNPSSN 254 (271)
Q Consensus 212 ~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~--~-----~v~iw~~~~~~~ 254 (271)
++-.. .+...... ..++ .-++.+.+.|+ + ++..||+.+.+-
T Consensus 454 ~~W~~~~~M~~~R~~-~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 454 NTWTLIAPMNTRRSG-FGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred CceeecCCccccccc-ceEE-EECCEEEEECCccCCCccceEEEEcCCCCce
Confidence 65433 22211111 1222 23566666665 2 277888877653
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.023 Score=30.08 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=25.8
Q ss_pred cceEEEEEcCCC---cEEEEEecCCeEEEEECCC
Q 024185 137 AEVCDIKFSNDG---KSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 137 ~~v~~~~~s~~~---~~l~~~~~d~~i~~~d~~~ 167 (271)
+.+.+++|||+. .+|+.+-.-+.+.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4788887889999999985
|
It contains a characteristic DLL sequence motif. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.39 Score=41.06 Aligned_cols=178 Identities=5% Similarity=-0.114 Sum_probs=85.1
Q ss_pred hhhhccC-----ceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecC--CeEEEEeCCCCCCCcceEEEecCC
Q 024185 65 LVLLTTA-----LEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEA--GAIKLFDSRSYDKGPFDTFLVGGD 135 (271)
Q Consensus 65 l~s~~~d-----g~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~ 135 (271)
++.|+.+ ..+..||..++.....-... ........-++...++|+.+ ..+..||..+++... ...+...
T Consensus 275 yviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~--~~~l~~~ 352 (480)
T PHA02790 275 YLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVN--MPSLLKP 352 (480)
T ss_pred EEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEE--CCCCCCC
Confidence 4456543 24667887766533222211 11111223467766777653 368888877654311 1111111
Q ss_pred ccceEEEEEcCCCcEEEEEecC---CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc
Q 024185 136 TAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR 212 (271)
Q Consensus 136 ~~~v~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 212 (271)
.... + ...-+|+..+.|+.+ ..+..||.++.+-...-......... ....-+++..+.|+ ...+||..++
T Consensus 353 r~~~-~-~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~--~~~~~~~~IYv~GG---~~e~ydp~~~ 425 (480)
T PHA02790 353 RCNP-A-VASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS--CALVFGRRLFLVGR---NAEFYCESSN 425 (480)
T ss_pred Cccc-E-EEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc--eEEEECCEEEEECC---ceEEecCCCC
Confidence 1111 1 122357777777754 34778887766533211111110111 12233566666664 4678888765
Q ss_pred eeEE--EecCCcceeEEEEEecCCcEEEEeC-------CeEEEEcCCCCC
Q 024185 213 NEVA--CWNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS 253 (271)
Q Consensus 213 ~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~ 253 (271)
+-.. .+....... +++ .-++++.+.|+ ..+..||..+++
T Consensus 426 ~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 426 TWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred cEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 4432 222111111 222 33677777775 247777776653
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.64 Score=40.34 Aligned_cols=143 Identities=9% Similarity=0.029 Sum_probs=68.7
Q ss_pred hhhhccC-----ceEEEEEecCcceeEEE--ecCCcceEEEcCCCCEEEEEecC------CeEEEEeCCCCCCCcceEEE
Q 024185 65 LVLLTTA-----LEYGIFVLMLASFQGIL--RLRGRPTVAFDQQGLVFAVAMEA------GAIKLFDSRSYDKGPFDTFL 131 (271)
Q Consensus 65 l~s~~~d-----g~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~ 131 (271)
++.||.+ ..+..||..+++....- +.......+..-+++..+.|+.+ ..+..||..+.+......
T Consensus 346 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-- 423 (534)
T PHA03098 346 YVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP-- 423 (534)
T ss_pred EEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC--
Confidence 4455544 34667787765533211 11111111222356666666632 468899988766421111
Q ss_pred ecCCccceEEEEEcCCCcEEEEEecC--------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC--
Q 024185 132 VGGDTAEVCDIKFSNDGKSMLLTTTN--------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-- 201 (271)
Q Consensus 132 ~~~~~~~v~~~~~s~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 201 (271)
+....... + +...+++.++.|+.+ ..+..||..+++-...-...........+.+ +++.++.|+.+
T Consensus 424 ~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~ 499 (534)
T PHA03098 424 LPISHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYE 499 (534)
T ss_pred CCccccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCC
Confidence 11111111 1 222356666776642 2388899877654322111111111111222 67777777654
Q ss_pred ---CcEEEEEcCCce
Q 024185 202 ---GTLHAWNINTRN 213 (271)
Q Consensus 202 ---g~i~iwd~~~~~ 213 (271)
+.+.+||..+.+
T Consensus 500 ~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 500 YYINEIEVYDDKTNT 514 (534)
T ss_pred cccceeEEEeCCCCE
Confidence 467888877654
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.56 Score=38.01 Aligned_cols=149 Identities=14% Similarity=0.106 Sum_probs=82.5
Q ss_pred ceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEE
Q 024185 94 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG 173 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 173 (271)
..+.+.|++.+++++. .|.+..-.-..++. .... .......+.++.+.++++.++++ ..|.+.+=....++.-..
T Consensus 176 ~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~t--W~~~-~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 176 RNLRRSPDGKYVAVSS-RGNFYSTWEPGQTA--WTPH-QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK 250 (334)
T ss_pred EEEEECCCCeEEEEeC-CceEEEEcCCCCCe--EEEe-eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence 3477778876665554 56554321111121 1111 12334678999999998876654 467665323333332221
Q ss_pred eecC--CCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec---CCcceeEEEEEecCCcEEEEeC-CeEEEE
Q 024185 174 FSLE--PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN---GNIGVVACLKWAPRRAMFVAAS-SVLSFW 247 (271)
Q Consensus 174 ~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~-~~v~iw 247 (271)
.... .....+..+.+.|+++.++++ .+|.+. .....++.-...+ .-......+.|..+++.+++|. |.|.-|
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~ 328 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRY 328 (334)
T ss_pred ccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEe
Confidence 1111 011236778899988765554 456554 3344444433332 2223577888888888888887 888877
Q ss_pred cC
Q 024185 248 IP 249 (271)
Q Consensus 248 ~~ 249 (271)
+-
T Consensus 329 ~~ 330 (334)
T PRK13684 329 VG 330 (334)
T ss_pred cC
Confidence 64
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.46 Score=36.97 Aligned_cols=156 Identities=8% Similarity=0.080 Sum_probs=97.1
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 172 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~ 172 (271)
+..+.|+|+.+.|++......-.++=..+++. +....+.+- ...-.+.|..++++.++--.++.+.++.+..+..+.
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~Gdl--irtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL--IRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCce--EEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 66699999999999888777666665566665 445555542 345567888888877777778999988876553221
Q ss_pred E-----ee--cCCC-CCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee---EEEecCC-------cceeEEEEEecCC
Q 024185 173 G-----FS--LEPS-PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE---VACWNGN-------IGVVACLKWAPRR 234 (271)
Q Consensus 173 ~-----~~--~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~-------~~~v~~~~~s~~~ 234 (271)
. +. .... ......++|+|..+.+..+-+-.-+.||.+..... ......+ -..|+++.|.+..
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~ 244 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT 244 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence 1 11 1111 23467799999999888888877777776653221 1111111 1346788888754
Q ss_pred c-EEEEeC--CeEEEEcCCC
Q 024185 235 A-MFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 235 ~-~l~~~~--~~v~iw~~~~ 251 (271)
. +|+-+. +.+.-.|...
T Consensus 245 ~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 245 NSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CcEEEEecCCceEEEEecCC
Confidence 4 444443 4444444443
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.14 Score=42.41 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=57.0
Q ss_pred ccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEE-CCC----------------CC-EEEE
Q 024185 136 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF-TPD----------------GQ-YVVS 197 (271)
Q Consensus 136 ~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~-~~~----------------~~-~l~~ 197 (271)
...+.++..+|++++.++...-|+|.++|+.++..++.+++..+. .+.=+.. .+. .. +++.
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA-qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA-QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc-eEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 345788999999998888877899999999999888877765542 1110100 111 11 2334
Q ss_pred ecCCCcEEEEEcCCceeEEEec
Q 024185 198 GSGDGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~~ 219 (271)
+-.-|.|.||.+++|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 5567889999998888777664
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.24 Score=41.46 Aligned_cols=149 Identities=11% Similarity=0.133 Sum_probs=87.8
Q ss_pred EEEcCCCCEEEE-EecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc-------EEEEEecCCeEEEEECCC
Q 024185 96 VAFDQQGLVFAV-AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-------SMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 96 ~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~d~~i~~~d~~~ 167 (271)
+-...|.++|+. |+....++-.|++.++. +..+.+ |.. + -+.|.|+.+ .-++|-.+..|.-.|.+-
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGkv--veeW~~--~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~ 546 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGKV--VEEWDL--KDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRA 546 (776)
T ss_pred eeecCCcceEEecCCCcccceeeeccccee--eeEeec--CCc-c-eeecCCchhHHhcCccceEEeecccceEEecccc
Confidence 344445555544 34445677778877775 333333 333 3 567777532 233444455565556543
Q ss_pred -CeEEEEeecCC--CCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-Ce
Q 024185 168 -GEKRCGFSLEP--SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SV 243 (271)
Q Consensus 168 -~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~ 243 (271)
|..+....... ......+..- ..+-+++.++..|.|++||--.-+....+++....|..+..+.+|+++++.+ ..
T Consensus 547 ~gNKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~y 625 (776)
T COG5167 547 RGNKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNY 625 (776)
T ss_pred cCCceeeeeehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecce
Confidence 32222211111 1111222222 2344899999999999999654444455677788899999999999887777 77
Q ss_pred EEEEcCCC
Q 024185 244 LSFWIPNP 251 (271)
Q Consensus 244 v~iw~~~~ 251 (271)
+.+-|+.-
T Consensus 626 llL~d~~i 633 (776)
T COG5167 626 LLLTDVPI 633 (776)
T ss_pred EEEEeccc
Confidence 88888754
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.55 Score=36.83 Aligned_cols=206 Identities=15% Similarity=0.113 Sum_probs=110.5
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEec------Cc-ceeEEEecC-------CcceEEEcCCC----------
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM------LA-SFQGILRLR-------GRPTVAFDQQG---------- 102 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~------~~-~~~~~~~~~-------~~~~~~~~~~~---------- 102 (271)
.-..++++|.+.. -++....+...+||.. .. ..+-++... ..+-+.|+...
T Consensus 24 N~WGia~~p~~~~-----WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~ 98 (336)
T TIGR03118 24 NAWGLSYRPGGPF-----WVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT 98 (336)
T ss_pred ccceeEecCCCCE-----EEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence 3456899998876 5566777889999886 12 223333321 12225554322
Q ss_pred --CEEEEEecCCeEEEEeCCCCCCCcce-EEEecCC-ccce-EEEEEcC--CCcEEEEEe-cCCeEEEEECCCCeEEEE-
Q 024185 103 --LVFAVAMEAGAIKLFDSRSYDKGPFD-TFLVGGD-TAEV-CDIKFSN--DGKSMLLTT-TNNNIYVLDAYGGEKRCG- 173 (271)
Q Consensus 103 --~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~-~~~v-~~~~~s~--~~~~l~~~~-~d~~i~~~d~~~~~~~~~- 173 (271)
..++.+++||+|.-|...-....... ...+... .+.| ..+++.. .+.+|+.+. ..++|.+||-. .+++..
T Consensus 99 ~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~ 177 (336)
T TIGR03118 99 GPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLP 177 (336)
T ss_pred cceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCC
Confidence 23677889999999986433220001 1222211 2333 3445443 456666654 47899999843 222211
Q ss_pred --eecCCCC-----C---------ceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec--CCcceeEEEEEec---
Q 024185 174 --FSLEPSP-----N---------TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAP--- 232 (271)
Q Consensus 174 --~~~~~~~-----~---------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~--- 232 (271)
+....-+ - .|+-..-.++++.=+.|..-|.|-++|+ .++.++++. +.-..-+.|+..|
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESF 256 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhh
Confidence 1111000 0 1111111233333334444578999997 578888773 2223456777766
Q ss_pred ---CCcEEEEe--CCeEEEEcCCCCCCCcCCC
Q 024185 233 ---RRAMFVAA--SSVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 233 ---~~~~l~~~--~~~v~iw~~~~~~~~~~~~ 259 (271)
.|.+|+-- +|+|..||..+++.+....
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 24444432 2889999999887655443
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.92 Score=40.21 Aligned_cols=149 Identities=10% Similarity=0.063 Sum_probs=85.5
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCCCc----ceEEEecC--------------CccceEEEEEcC--CCcEEEEEe
Q 024185 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP----FDTFLVGG--------------DTAEVCDIKFSN--DGKSMLLTT 155 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~--------------~~~~v~~~~~s~--~~~~l~~~~ 155 (271)
.+.+. .++++++. .+.|.+|+.......+ ...+.... ....|..+.... +...|+.+.
T Consensus 44 talsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~ 121 (717)
T PF08728_consen 44 TALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCT 121 (717)
T ss_pred eEEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEe
Confidence 44444 66666655 6789999876533211 00100000 112244444333 456788899
Q ss_pred cCCeEEEEECCC-------C----e---------EEEEeecCCCCCceeeEEEC--CCCCEEEEecCCCcEEEEEcCCc-
Q 024185 156 TNNNIYVLDAYG-------G----E---------KRCGFSLEPSPNTNTEATFT--PDGQYVVSGSGDGTLHAWNINTR- 212 (271)
Q Consensus 156 ~d~~i~~~d~~~-------~----~---------~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~- 212 (271)
.||.|.+|..++ . + +...+... ..+.+++++ ...+++|+++....|.+|-....
T Consensus 122 DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~---~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~ 198 (717)
T PF08728_consen 122 DDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVG---ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVD 198 (717)
T ss_pred cCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecC---CceeEEEEEecCcceEEEEecCCceEEEEEEeccc
Confidence 999999997521 1 0 11111111 347778888 77888888888888888765432
Q ss_pred -eeEE-EecCCcceeEEEEEecCC---c---EEEEeC--CeEEEEcC
Q 024185 213 -NEVA-CWNGNIGVVACLKWAPRR---A---MFVAAS--SVLSFWIP 249 (271)
Q Consensus 213 -~~~~-~~~~~~~~v~~~~~s~~~---~---~l~~~~--~~v~iw~~ 249 (271)
+... .-..+...|.+++|-++. . .+++++ |.+.+|++
T Consensus 199 ~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 199 ERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1111 111245568899998753 2 666676 88777776
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.064 Score=40.40 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=52.0
Q ss_pred EEECCCCCEEEEecCCCcEEEEEcCCceeEEEe-------c-------CCcceeEEEEEecCCcEEEEeC-CeEEEEcCC
Q 024185 186 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-------N-------GNIGVVACLKWAPRRAMFVAAS-SVLSFWIPN 250 (271)
Q Consensus 186 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~ 250 (271)
+.+..+++++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ |+.+.|+.+
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 445678899999999999999999988775432 1 2446788999999998777776 888888765
Q ss_pred CC
Q 024185 251 PS 252 (271)
Q Consensus 251 ~~ 252 (271)
-+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 54
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.49 Score=34.90 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=92.4
Q ss_pred CceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEE-EecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC
Q 024185 71 ALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAV-AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 147 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 147 (271)
...|+.||+.+++.+..-.-.. ...=-...-++++.. .-.+|.-..+|.++.+. +..+.+.+. -.. ...|
T Consensus 67 ~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~--lg~~~y~Ge---GWg--Lt~d 139 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE--LGRFSYEGE---GWG--LTSD 139 (262)
T ss_pred cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh--hcccccCCc---cee--eecC
Confidence 3469999999998765544331 111111122333332 34578888899887664 334444332 222 3446
Q ss_pred CcEEEEEecCCeEEEEECCCCeEEEEeecCCCC---CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec-----
Q 024185 148 GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN----- 219 (271)
Q Consensus 148 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----- 219 (271)
++.|+.++...+++.-|.++.....++...... ..+..+.| -||...|-.-.+..|...|..+|+.+..+.
T Consensus 140 ~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~ 218 (262)
T COG3823 140 DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLL 218 (262)
T ss_pred CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCc
Confidence 666777766667777776655444433222221 12233444 356666666666677777777877765442
Q ss_pred -------CCcceeEEEEEecCC-cEEEEeC
Q 024185 220 -------GNIGVVACLKWAPRR-AMFVAAS 241 (271)
Q Consensus 220 -------~~~~~v~~~~~s~~~-~~l~~~~ 241 (271)
.|..-.+.+++.|++ +++++|-
T Consensus 219 ~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 219 KELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred hhcCccccccccccceeecCcCCeEEEecC
Confidence 234456889999987 5555553
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.015 Score=51.44 Aligned_cols=139 Identities=12% Similarity=0.143 Sum_probs=80.7
Q ss_pred CceEEEEEec--CcceeEEEecC-------CcceEEEcC---CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccc
Q 024185 71 ALEYGIFVLM--LASFQGILRLR-------GRPTVAFDQ---QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE 138 (271)
Q Consensus 71 dg~i~iwd~~--~~~~~~~~~~~-------~~~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 138 (271)
-|...+|+++ .|+....+..+ ...-+.|.| +..++..+-.++++++....+... .-+.+|...
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-----~l~rsHs~~ 226 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-----SLFRSHSQR 226 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-----HHHHhcCCC
Confidence 3567888875 44433333221 122255544 567888888888888877655332 112235443
Q ss_pred eEEE-----------EEcCCCcEEEEEecCCeEEEEECC-----CCeEEEEeecCCCCCceeeEEECCC-------C--C
Q 024185 139 VCDI-----------KFSNDGKSMLLTTTNNNIYVLDAY-----GGEKRCGFSLEPSPNTNTEATFTPD-------G--Q 193 (271)
Q Consensus 139 v~~~-----------~~s~~~~~l~~~~~d~~i~~~d~~-----~~~~~~~~~~~~~~~~v~~~~~~~~-------~--~ 193 (271)
+..+ ..||||+.++.++.||.++.|.+. .-++++..+.|...-.+..+ ++.+ + .
T Consensus 227 ~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~ 305 (1283)
T KOG1916|consen 227 VTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWV 305 (1283)
T ss_pred cccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeE
Confidence 3332 379999999999999998888653 33445555555532222222 2211 1 1
Q ss_pred EEEEecC-CCcEEEEEcCCceeE
Q 024185 194 YVVSGSG-DGTLHAWNINTRNEV 215 (271)
Q Consensus 194 ~l~~~~~-dg~i~iwd~~~~~~~ 215 (271)
++++++. +..+++|.....+++
T Consensus 306 ~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 306 LRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred EEEecccCCcceeEeeccchhhh
Confidence 3445544 567999998877776
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.37 Score=36.81 Aligned_cols=141 Identities=13% Similarity=0.127 Sum_probs=79.5
Q ss_pred EEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-C--CeEEEEECCC----CeEEEEeecCCCCCceeeE
Q 024185 114 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N--NNIYVLDAYG----GEKRCGFSLEPSPNTNTEA 186 (271)
Q Consensus 114 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--~~i~~~d~~~----~~~~~~~~~~~~~~~v~~~ 186 (271)
-.+||+.+++..++. + ....-+..=.+-|||+++.+|+. + ..+++++..+ ......-..-....+-.+.
T Consensus 48 s~~yD~~tn~~rpl~---v-~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~ 123 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLT---V-QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA 123 (243)
T ss_pred EEEEecCCCcEEecc---C-CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence 347899887742221 1 12223344467889999998875 2 4578887543 1111110111122344446
Q ss_pred EECCCCCEEEEecCCC-cEEEEEcCC-ceeEEE---ecC-----CcceeEEEEEecCCcEEEEeCCeEEEEcCCCCCCCc
Q 024185 187 TFTPDGQYVVSGSGDG-TLHAWNINT-RNEVAC---WNG-----NIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNST 256 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg-~i~iwd~~~-~~~~~~---~~~-----~~~~v~~~~~s~~~~~l~~~~~~v~iw~~~~~~~~~ 256 (271)
..-|||+.++.|+... +..+|.-+. ...... +.. ....-.-+-..|||++++.+...-.|||..+.+...
T Consensus 124 ~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~ 203 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVR 203 (243)
T ss_pred eECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEe
Confidence 6678999999988864 345555422 111111 110 111123466789999999998777888998886644
Q ss_pred CC
Q 024185 257 DE 258 (271)
Q Consensus 257 ~~ 258 (271)
+.
T Consensus 204 ~l 205 (243)
T PF07250_consen 204 TL 205 (243)
T ss_pred eC
Confidence 43
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.076 Score=28.14 Aligned_cols=30 Identities=13% Similarity=0.300 Sum_probs=25.1
Q ss_pred ceeeEEECCCC---CEEEEecCCCcEEEEEcCC
Q 024185 182 TNTEATFTPDG---QYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 182 ~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~ 211 (271)
.+.++.|+|+. .+|+.+-..|.+.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 47889999854 4888888889999999985
|
It contains a characteristic DLL sequence motif. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.12 Score=47.21 Aligned_cols=142 Identities=12% Similarity=0.127 Sum_probs=88.9
Q ss_pred EEEcCCCCEEEEE--ecCCeEEEEeCCCCCCCcceE-EEecCC------ccceEEEEEcCCCc-EEEEEecCCeEEEEEC
Q 024185 96 VAFDQQGLVFAVA--MEAGAIKLFDSRSYDKGPFDT-FLVGGD------TAEVCDIKFSNDGK-SMLLTTTNNNIYVLDA 165 (271)
Q Consensus 96 ~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~-~~~~~~------~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~ 165 (271)
+...+|+...++. +.+-.|..||+++........ ..+..| .....++.|+|.-. ..+....|+.|++..+
T Consensus 106 ~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~ 185 (1405)
T KOG3630|consen 106 FVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKST 185 (1405)
T ss_pred EEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhh
Confidence 5666777655544 333478999997654311111 111111 23456788998533 3456677888888876
Q ss_pred CCCe-EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC----cceeEEEEEecCCcEEEEe
Q 024185 166 YGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN----IGVVACLKWAPRRAMFVAA 240 (271)
Q Consensus 166 ~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~ 240 (271)
.... ....+. .....++++|+|.|+.++.|-..|++.-|... ++....+.+. ...|.++.|-....+++.-
T Consensus 186 ~~~~~~v~s~p---~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 186 KQLAQNVTSFP---VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred hhhhhhhcccC---cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 4322 122222 12348899999999999999999999988753 4433333221 4679999999887777765
Q ss_pred C
Q 024185 241 S 241 (271)
Q Consensus 241 ~ 241 (271)
+
T Consensus 262 ~ 262 (1405)
T KOG3630|consen 262 G 262 (1405)
T ss_pred c
Confidence 4
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.31 Score=41.57 Aligned_cols=117 Identities=9% Similarity=0.056 Sum_probs=73.3
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEec-----CcceeEEE--ecC-Cc----ceEEEcCCCCEEEEEecCC
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM-----LASFQGIL--RLR-GR----PTVAFDQQGLVFAVAMEAG 112 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~-----~~~~~~~~--~~~-~~----~~~~~~~~~~~l~~~~~d~ 112 (271)
-..|..++|.|-+..-. ..+++......|.+|.+. +++.+..- +.. .. ..+-|+|....|++-....
T Consensus 56 FEhV~GlsW~P~~~~~~-paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADT-PALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred cceeeeeeecCcccCCC-CceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 34688899998754311 015566778899999885 22322221 111 11 2288999999888776555
Q ss_pred eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CCeEEEEEC
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDA 165 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~ 165 (271)
.-.++++..... .....++ ..+-|.|.+|.+||+.|+++-. .=.-++||-
T Consensus 135 vSV~~sV~~d~s--rVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 135 VSVLPSVHCDSS--RVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eeEeeeeeeCCc--eEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 545666665443 1133343 4578999999999998876643 345678874
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.89 Score=36.11 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=78.4
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC-CCeEE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY-GGEKR 171 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~-~~~~~ 171 (271)
+..+.-++||++++++....-..-||.-.... .... ......+..+.|+|++.+.++ ...|.++.=+.. ..+.-
T Consensus 147 ~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w---~~~~-r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 147 INDITRSSDGRYVAVSSRGNFYSSWDPGQTTW---QPHN-RNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGETW 221 (302)
T ss_dssp EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE---SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEEEE
T ss_pred eEeEEECCCCcEEEEECcccEEEEecCCCccc---eEEc-cCccceehhceecCCCCEEEE-eCCcEEEEccCCCCcccc
Confidence 34467789999888887555555777654332 1222 224578999999999876554 488888887722 22211
Q ss_pred EE--eecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec---CCcceeEEEEEecCCcEEEEeC-CeEE
Q 024185 172 CG--FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN---GNIGVVACLKWAPRRAMFVAAS-SVLS 245 (271)
Q Consensus 172 ~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~-~~v~ 245 (271)
.. .......-.+..++|.+++...++|+.. .+ +.....|+.=+.-+ .-.+....+.|.++.+-++.|. |.+.
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll 299 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLL 299 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEE
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEE
Confidence 11 1111222347889999998877766654 33 33445555544432 2234578899988888888887 7655
Q ss_pred EE
Q 024185 246 FW 247 (271)
Q Consensus 246 iw 247 (271)
-|
T Consensus 300 ~~ 301 (302)
T PF14870_consen 300 RY 301 (302)
T ss_dssp EE
T ss_pred Ee
Confidence 44
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.44 Score=32.47 Aligned_cols=107 Identities=9% Similarity=0.144 Sum_probs=66.9
Q ss_pred EEEcCCCcEEEEEecCCeEEEEECCCC--------eEEEEeecCCCCCceeeEE---ECC--CCCEEEEecCCCcEEEEE
Q 024185 142 IKFSNDGKSMLLTTTNNNIYVLDAYGG--------EKRCGFSLEPSPNTNTEAT---FTP--DGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 142 ~~~s~~~~~l~~~~~d~~i~~~d~~~~--------~~~~~~~~~~~~~~v~~~~---~~~--~~~~l~~~~~dg~i~iwd 208 (271)
-+|......|+.++.-|+|.+++.... ..++.+..... |++++ |.| +...|+.|+. ..+..||
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~---italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQE---ITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCc---eEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 355666667888888889999986532 23444544443 55554 433 2346666665 4799999
Q ss_pred cCCceeEEEecCCcceeEEEEEec----CCcEEEEeC-CeEEEEcCCCCC
Q 024185 209 INTRNEVACWNGNIGVVACLKWAP----RRAMFVAAS-SVLSFWIPNPSS 253 (271)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~-~~v~iw~~~~~~ 253 (271)
+.++..+.-.+-+ ..|+++.+-. +..+++.|+ ..|.-||.+..+
T Consensus 80 V~~N~d~Fyke~~-DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 80 VENNSDLFYKEVP-DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred cccCchhhhhhCc-cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 9887776644433 4467776633 345677776 568777766543
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.2 Score=37.53 Aligned_cols=110 Identities=8% Similarity=0.043 Sum_probs=59.5
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceE---EEecCCccceEEEEEcCCC------cEEEEEe-------
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT---FLVGGDTAEVCDIKFSNDG------KSMLLTT------- 155 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~------~~l~~~~------- 155 (271)
..+.++|.||++.|++--..|.|++++..+........ .......+....|+++|+- .+|+...
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~ 110 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK 110 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence 35669999999876666546999999865543211110 1111135778999999875 2344332
Q ss_pred ---cCCeEEEEECCCC--e---EEEEeecC--CCCCceeeEEECCCCCEEEEecCC
Q 024185 156 ---TNNNIYVLDAYGG--E---KRCGFSLE--PSPNTNTEATFTPDGQYVVSGSGD 201 (271)
Q Consensus 156 ---~d~~i~~~d~~~~--~---~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d 201 (271)
....|.-|.+... . ....+... .....-..+.|.|||++.++.++.
T Consensus 111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234544554321 1 11112111 001123458899999877755543
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.1 Score=36.81 Aligned_cols=143 Identities=13% Similarity=0.091 Sum_probs=72.7
Q ss_pred EEeeEEecCCchhhhhhhhhh-----------ccCc-eEEEEEecC--cce--eEEEec-C-CcceEEEcCCCCEEEEEe
Q 024185 48 RRGLFLSACLQLMIALCLVLL-----------TTAL-EYGIFVLML--ASF--QGILRL-R-GRPTVAFDQQGLVFAVAM 109 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~-----------~~dg-~i~iwd~~~--~~~--~~~~~~-~-~~~~~~~~~~~~~l~~~~ 109 (271)
...+++.++|+.. ++- ...+ .|.+++-.+ |+. ...+.. - ....+++.+++ |+++.
T Consensus 16 P~~ia~d~~G~l~-----V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~ 88 (367)
T TIGR02604 16 PIAVCFDERGRLW-----VAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT 88 (367)
T ss_pred CceeeECCCCCEE-----EEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC
Confidence 3347788888762 222 1223 676665432 332 223322 2 23458888888 44444
Q ss_pred cCCeEEEE-eCCCCC-CC-cce-EE-EecC----CccceEEEEEcCCCcEEEEEec-------------------CCeEE
Q 024185 110 EAGAIKLF-DSRSYD-KG-PFD-TF-LVGG----DTAEVCDIKFSNDGKSMLLTTT-------------------NNNIY 161 (271)
Q Consensus 110 ~d~~i~i~-d~~~~~-~~-~~~-~~-~~~~----~~~~v~~~~~s~~~~~l~~~~~-------------------d~~i~ 161 (271)
.. .|..+ |..... .. ... .. .+.. +......++|.|||.+.++-+. .|.+.
T Consensus 89 ~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 89 PP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred CC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence 34 45444 553321 10 011 11 1211 1344778999999987665442 14456
Q ss_pred EEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC
Q 024185 162 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 201 (271)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 201 (271)
-+|..+++....-.+. .....++|+|+|+++++-..+
T Consensus 168 r~~pdg~~~e~~a~G~---rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 168 RYNPDGGKLRVVAHGF---QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EEecCCCeEEEEecCc---CCCccceECCCCCEEEEccCC
Confidence 6665544432221222 225569999999987765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.2 Score=45.93 Aligned_cols=144 Identities=12% Similarity=0.009 Sum_probs=88.7
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce-----eEEEecC--------CcceEEEcCCC-CEEEEEecC
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF-----QGILRLR--------GRPTVAFDQQG-LVFAVAMEA 111 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~--------~~~~~~~~~~~-~~l~~~~~d 111 (271)
-.+..+...+|+...++ +..+.+..|..||+++-.. ..-+..+ -..++.|+|.- ...++...|
T Consensus 101 ~pi~~~v~~~D~t~s~v---~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~d 177 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVV---VSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSD 177 (1405)
T ss_pred ccceEEEeccCCceEEE---EEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccc
Confidence 34555666677665322 2344466888999975321 1111111 13347888864 245666778
Q ss_pred CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCC--CCceeeEEEC
Q 024185 112 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS--PNTNTEATFT 189 (271)
Q Consensus 112 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~v~~~~~~ 189 (271)
+.|++..+..... ....+ .-....++++|+|.|+.+++|-..|++.-|.. +.+....+..... ...|.+++|-
T Consensus 178 lsl~V~~~~~~~~---~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 178 LSLRVKSTKQLAQ---NVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred cchhhhhhhhhhh---hhccc-CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEe
Confidence 8888887654332 11111 23457899999999999999999999999874 3444444332211 2568999998
Q ss_pred CCCCEEEE
Q 024185 190 PDGQYVVS 197 (271)
Q Consensus 190 ~~~~~l~~ 197 (271)
....++++
T Consensus 253 ~t~eflvv 260 (1405)
T KOG3630|consen 253 STQEFLVV 260 (1405)
T ss_pred cceeEEEE
Confidence 77777664
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.0021 Score=52.62 Aligned_cols=136 Identities=13% Similarity=0.173 Sum_probs=96.8
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEE-EecCCeEEEEECCCCeEEEEe
Q 024185 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL-TTTNNNIYVLDAYGGEKRCGF 174 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~ 174 (271)
..|-|.+.-++.++.+..+..||-.... ... ...++....++|..++..++. +-..+.+.+||+.+... +.+
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~-----~le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL 112 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQV-----ILE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL 112 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcce-----ecc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH
Confidence 7788888778988888899999965433 111 123466778888888776654 45578999999865432 222
Q ss_pred ecC-CCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEe
Q 024185 175 SLE-PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA 240 (271)
Q Consensus 175 ~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 240 (271)
... ...... +.|++....++.+...|.+.|++..+.+.+...-.|...+++++|.+.+..+...
T Consensus 113 E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 113 ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred hccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 211 111112 7899999999999889999999988777766665588889999999987655544
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.78 Score=41.09 Aligned_cols=76 Identities=21% Similarity=0.265 Sum_probs=52.0
Q ss_pred cceEEEEEcCCCcEEEEEecCCeEEEEECCC----------CeE---EEEeec------CCCCCceeeEEECCC---CCE
Q 024185 137 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG----------GEK---RCGFSL------EPSPNTNTEATFTPD---GQY 194 (271)
Q Consensus 137 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~----------~~~---~~~~~~------~~~~~~v~~~~~~~~---~~~ 194 (271)
-.|..+..+|+|++++..+..| |.|..+.. |+. .+++.. ......|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688999999999999888765 44444421 111 111111 112246888999997 478
Q ss_pred EEEecCCCcEEEEEcCCce
Q 024185 195 VVSGSGDGTLHAWNINTRN 213 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~~~ 213 (271)
|+.-..|+++++||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8888999999999997533
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.8 Score=37.06 Aligned_cols=145 Identities=12% Similarity=0.028 Sum_probs=76.1
Q ss_pred cCceEEEEEecCcceeEEEecCCcce--EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc-cceEEEEEcC
Q 024185 70 TALEYGIFVLMLASFQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT-AEVCDIKFSN 146 (271)
Q Consensus 70 ~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~s~ 146 (271)
..+...+.|. +|.....+....... +...++|.+++... ..+..+|..... .....+.+.. ..=+.+..-|
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v---~~~~~l~~~~~~~HHD~~~l~ 199 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV---IWEYDLPGGYYDFHHDIDELP 199 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E---EEEEE--TTEE-B-S-EEE-T
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE---EEeeecCCcccccccccEECC
Confidence 4555666666 455555555443333 66788998776555 788888886432 3344444321 1235677889
Q ss_pred CCcEEEEEec-------------CCeEEEEECCCCeEEEEeecCCC-------------------------CCceeeEEE
Q 024185 147 DGKSMLLTTT-------------NNNIYVLDAYGGEKRCGFSLEPS-------------------------PNTNTEATF 188 (271)
Q Consensus 147 ~~~~l~~~~~-------------d~~i~~~d~~~~~~~~~~~~~~~-------------------------~~~v~~~~~ 188 (271)
+|++|+.+.. .-.|..+| .+|+.+..+..... -..+.++.+
T Consensus 200 nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~y 278 (477)
T PF05935_consen 200 NGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDY 278 (477)
T ss_dssp TS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEE
T ss_pred CCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEE
Confidence 9999887772 22466666 67776655332110 034778899
Q ss_pred CC-CCCEEEEecCCCcEEEEEcCCceeEEEecCC
Q 024185 189 TP-DGQYVVSGSGDGTLHAWNINTRNEVACWNGN 221 (271)
Q Consensus 189 ~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 221 (271)
.+ ++.+++++-.-..|...|.++++....+..+
T Consensus 279 d~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 279 DPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp ETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred eCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 88 5666666655668889998899888877554
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.2 Score=41.28 Aligned_cols=158 Identities=11% Similarity=0.070 Sum_probs=92.6
Q ss_pred ceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEe-cC-CccceE-EEEEcCCCcEEEEEecCCeEEEE-ECCCCe
Q 024185 94 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV-GG-DTAEVC-DIKFSNDGKSMLLTTTNNNIYVL-DAYGGE 169 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~-~~~~v~-~~~~s~~~~~l~~~~~d~~i~~~-d~~~~~ 169 (271)
..+-..|||+.++.-+. .++.++++.+......+.... .+ ....|+ .+..-..|..+++++.||-|.-| |.+.+.
T Consensus 224 ~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~ 302 (733)
T COG4590 224 SQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDG 302 (733)
T ss_pred HhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCC
Confidence 34778899998887764 688889887765421111111 01 001122 22233456778889999988876 554322
Q ss_pred E-----EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-Ce
Q 024185 170 K-----RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SV 243 (271)
Q Consensus 170 ~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~ 243 (271)
. ++.++....+ +..+.-..+.+-+++-..+|++..+.....+.+-.-.. -..+.-+++||++.++++-. |.
T Consensus 303 ~p~l~h~R~f~l~pa~--~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~~~~~~~~Sp~~~~Ll~e~~gk 379 (733)
T COG4590 303 QPHLNHIRNFKLAPAE--VQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQAPQLVAMSPNQAYLLSEDQGK 379 (733)
T ss_pred CCcceeeeccccCccc--ceeeccccccceEEEEcCCCceeeeecccCcceehhhh-hcCcceeeeCcccchheeecCCc
Confidence 1 2222222222 22222223345567777788888776544433322222 22467789999999999887 99
Q ss_pred EEEEcCCCCCCC
Q 024185 244 LSFWIPNPSSNS 255 (271)
Q Consensus 244 v~iw~~~~~~~~ 255 (271)
++++.+++..+.
T Consensus 380 i~~~~l~Nr~Pe 391 (733)
T COG4590 380 IRLAQLENRNPE 391 (733)
T ss_pred eEEEEecCCCCC
Confidence 999999876543
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.78 Score=37.13 Aligned_cols=107 Identities=22% Similarity=0.309 Sum_probs=54.5
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEE--EecCCccceEEEEEcCC----CcEEEEEecC--------C
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF--LVGGDTAEVCDIKFSND----GKSMLLTTTN--------N 158 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~----~~~l~~~~~d--------~ 158 (271)
...++|.|||+.++ +...|.|++++.......++... ...........++++|+ +...++.+.. .
T Consensus 4 P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 35699999987655 56699999999332221111111 11234467899999994 3333333321 2
Q ss_pred eEEEEECCCC-------eEE-EEeec-CCCCCceeeEEECCCCCEEEEecC
Q 024185 159 NIYVLDAYGG-------EKR-CGFSL-EPSPNTNTEATFTPDGQYVVSGSG 200 (271)
Q Consensus 159 ~i~~~d~~~~-------~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~ 200 (271)
.|.-|....+ +.+ ..+.. ......-..+.|.|||.+.++.+.
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 3444544333 111 11222 011123566999999976666544
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.2 Score=37.78 Aligned_cols=82 Identities=15% Similarity=0.183 Sum_probs=54.5
Q ss_pred ceEEEEEcCCCcEEEEEecCCeEEEEEC---------CCCeEE---EEeec------CCCCCceeeEEECCCC---CEEE
Q 024185 138 EVCDIKFSNDGKSMLLTTTNNNIYVLDA---------YGGEKR---CGFSL------EPSPNTNTEATFTPDG---QYVV 196 (271)
Q Consensus 138 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~---------~~~~~~---~~~~~------~~~~~~v~~~~~~~~~---~~l~ 196 (271)
.|..+..++.|..++..+.+|.+.++=- ++|+.. +++.. ....-.+..++|+|++ ..+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 5778889999999999998886554421 223221 11111 1111346678999985 5677
Q ss_pred EecCCCcEEEEEcCCceeEEEec
Q 024185 197 SGSGDGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 197 ~~~~dg~i~iwd~~~~~~~~~~~ 219 (271)
.-+.|+.|++||+...+.+....
T Consensus 185 iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred EEecCcEEEEEecCCcchhhccC
Confidence 77889999999998877766543
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=94.92 E-value=1.5 Score=34.72 Aligned_cols=167 Identities=11% Similarity=0.168 Sum_probs=88.1
Q ss_pred ceEEEEEecCcceeEEEecCC--------cceEEEcCCC-----CEEEEEe-cCCeEEEEeCCCCCC----------Cc-
Q 024185 72 LEYGIFVLMLASFQGILRLRG--------RPTVAFDQQG-----LVFAVAM-EAGAIKLFDSRSYDK----------GP- 126 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~-----~~l~~~~-~d~~i~i~d~~~~~~----------~~- 126 (271)
-++..||+.+++.++++..+. ...+.+.... .+.+.+. ..+.|.++|+.+++. .|
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 468889999999888875442 1225554421 3444443 335899999988653 00
Q ss_pred ceEEEecC----CccceEEEEEcC---CCcEEEEEecCCeEEEEECC-----CCe---------EEEEeecCCCCCceee
Q 024185 127 FDTFLVGG----DTAEVCDIKFSN---DGKSMLLTTTNNNIYVLDAY-----GGE---------KRCGFSLEPSPNTNTE 185 (271)
Q Consensus 127 ~~~~~~~~----~~~~v~~~~~s~---~~~~l~~~~~d~~i~~~d~~-----~~~---------~~~~~~~~~~~~~v~~ 185 (271)
...+...+ ..+.+..++.+| +++.|+.....+ -++|.+. +.. .+..+.... .....
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~--~~s~g 190 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKG--SQSDG 190 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-----SECE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccC--CCCce
Confidence 00111100 012366666665 666776665433 2233322 111 112221111 12556
Q ss_pred EEECCCCCEEEEecCCCcEEEEEcCCc---eeEEEe--cCC-cceeEEEEEec--CCcEEEEeC
Q 024185 186 ATFTPDGQYVVSGSGDGTLHAWNINTR---NEVACW--NGN-IGVVACLKWAP--RRAMFVAAS 241 (271)
Q Consensus 186 ~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~--~~~-~~~v~~~~~s~--~~~~l~~~~ 241 (271)
++++++|..+++--..+.|..|+..+. +....+ ... -..+.++.+.+ +|.+.+.++
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 889999998888888999999998761 112222 222 35778999999 887666654
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.42 Score=36.05 Aligned_cols=75 Identities=9% Similarity=0.172 Sum_probs=51.0
Q ss_pred ceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcce--EEE-ec-------CCccceEEEEEcCCCcEEEEEecCCeEEEE
Q 024185 94 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD--TFL-VG-------GDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 163 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~-~~-------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~ 163 (271)
+++.+..+++++++-+.+|.+++||+.+.+..... ... +. .....|..+..+.+|.-+++-+ +|..+.|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence 34556678899999999999999999987641100 000 11 2446788888888887766655 5778888
Q ss_pred ECCCCe
Q 024185 164 DAYGGE 169 (271)
Q Consensus 164 d~~~~~ 169 (271)
|..-+.
T Consensus 93 ~~~L~~ 98 (219)
T PF07569_consen 93 SPDLGC 98 (219)
T ss_pred ccccce
Confidence 865443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.84 E-value=2.3 Score=39.09 Aligned_cols=110 Identities=18% Similarity=0.112 Sum_probs=68.8
Q ss_pred EEEEeeecceeEEeeecceeeEEEEeeccceeeEEEEEc--ccccceEEeeEEecCC---chhhhhhhhhhccCceEEEE
Q 024185 3 LIVFALPITQALLFARQNIILILLESLCGIYQCMIIEFF--ATSKGIRRGLFLSACL---QLMIALCLVLLTTALEYGIF 77 (271)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~---~~~~~~~l~s~~~dg~i~iw 77 (271)
-|+.+--....++++++++.++.+....+. ...+++ ..-+..+.|+++.++. +.--. ++.++.|+.+++.
T Consensus 541 ~Iv~~avnr~qiVvalSngelvyfe~d~sg---ql~E~~er~tl~~~vac~ai~~~~~g~krsrf--la~a~~d~~vrii 615 (1205)
T KOG1898|consen 541 RIVKCAVNRRQIVVALSNGELVYFEGDVSG---QLNEFTERVTLSTDVACLAIGQDPEGEKRSRF--LALASVDNMVRII 615 (1205)
T ss_pred EEEEEeecceEEEEEccCCeEEEEEeccCc---cceeeeeeeeeceeehhhccCCCCcchhhcce--eeeeccccceeEE
Confidence 345555555677788889998887764221 222223 2234578888888776 22112 7788999999999
Q ss_pred EecCcceeEEEecCCcce-------EEEcCCCC------EEEEEecCCeEEEE
Q 024185 78 VLMLASFQGILRLRGRPT-------VAFDQQGL------VFAVAMEAGAIKLF 117 (271)
Q Consensus 78 d~~~~~~~~~~~~~~~~~-------~~~~~~~~------~l~~~~~d~~i~i~ 117 (271)
.+.....+..+...++.+ +....++. +|.+|-.+|.+.-.
T Consensus 616 sL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 616 SLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred EecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 998777777775543221 34444442 56677778866544
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.9 Score=36.95 Aligned_cols=139 Identities=8% Similarity=-0.074 Sum_probs=64.9
Q ss_pred hhhhccC--ceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecCC---eEEEEeCCCCCCCcceEEEecCCcc
Q 024185 65 LVLLTTA--LEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEAG---AIKLFDSRSYDKGPFDTFLVGGDTA 137 (271)
Q Consensus 65 l~s~~~d--g~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~ 137 (271)
.+.|+.+ ..+..||..+++....-+.. ........-+|+..+.|+.++ .+..||.++.+...... +.....
T Consensus 322 YviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~--m~~~r~ 399 (480)
T PHA02790 322 YVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS--TYYPHY 399 (480)
T ss_pred EEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC--CCCccc
Confidence 4456543 35677887655432211111 111122233677777776543 47788987765411111 111111
Q ss_pred ceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC-----CcEEEEEcCCc
Q 024185 138 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-----GTLHAWNINTR 212 (271)
Q Consensus 138 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 212 (271)
.. ++ ..-+++..+.|+ .+..||.++++-...-......... +++ .-+++..+.|+.+ ..+..||..++
T Consensus 400 ~~-~~-~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 400 KS-CA-LVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cc-eE-EEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 11 22 233566556653 4678888766543221111111112 122 2366777777754 24556666544
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.46 Score=34.37 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=24.2
Q ss_pred ceEEEEEcCCC------cEEEEEecCCeEEEEECCC
Q 024185 138 EVCDIKFSNDG------KSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 138 ~v~~~~~s~~~------~~l~~~~~d~~i~~~d~~~ 167 (271)
.+..++|||.| -.|++.+.++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999953 3678888999999998653
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.61 E-value=1.7 Score=35.25 Aligned_cols=102 Identities=15% Similarity=0.264 Sum_probs=55.0
Q ss_pred ceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE---EEEee--cCCCCCceeeEEECCC----CCEEEEecCC-------
Q 024185 138 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK---RCGFS--LEPSPNTNTEATFTPD----GQYVVSGSGD------- 201 (271)
Q Consensus 138 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~--~~~~~~~v~~~~~~~~----~~~l~~~~~d------- 201 (271)
..+.|+|.|||+.++ +...|.|++++ ..+.. +..+. ..........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 357899999987655 56699999999 55544 22221 1112245788999995 3333333311
Q ss_pred -CcEEEEEcCCc-------eeE-EEecC---CcceeEEEEEecCCcEEEEeC
Q 024185 202 -GTLHAWNINTR-------NEV-ACWNG---NIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 202 -g~i~iwd~~~~-------~~~-~~~~~---~~~~v~~~~~s~~~~~l~~~~ 241 (271)
..|.-|....+ +.+ ..+.. ....-..|.|.|||.+.++.+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 24544544433 111 12222 122346799999998666654
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.24 Score=25.94 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=28.2
Q ss_pred CCCCEEEEecC-CCcEEEEEcCCceeEEEecCCcceeEEEEE
Q 024185 190 PDGQYVVSGSG-DGTLHAWNINTRNEVACWNGNIGVVACLKW 230 (271)
Q Consensus 190 ~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 230 (271)
|++++++++.. +++|.++|..+++.+..+... .....+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 67777776654 789999999998888877653 22344544
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.53 E-value=3.9 Score=37.78 Aligned_cols=172 Identities=12% Similarity=0.061 Sum_probs=96.7
Q ss_pred eEEEEEecCcceeEEEecCC------cceEEEcCCCC--EEEEEec-----------CCeEEEEeCCCCCCCcceEEEec
Q 024185 73 EYGIFVLMLASFQGILRLRG------RPTVAFDQQGL--VFAVAME-----------AGAIKLFDSRSYDKGPFDTFLVG 133 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~--~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~ 133 (271)
.|+++|..+++.+..+.... +..+.|+..+. +++++.. +|.++.|+.-.... ...+-
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~----~lell 929 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD----KLELL 929 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc----eeeee
Confidence 58888988887666654331 23355654332 3444421 34577777643322 11111
Q ss_pred ---CCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEE--EEE
Q 024185 134 ---GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLH--AWN 208 (271)
Q Consensus 134 ---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~--iwd 208 (271)
.-.+.+ .+..|-..++++| ....+++||+...++++......-+..|..+++. +..++.|....++. .|+
T Consensus 930 h~T~~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 930 HKTEIPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred eccCCCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEe
Confidence 112233 3556755555544 4568999999988887776655545557667664 55677776654444 455
Q ss_pred cCCceeEEEec-CCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 209 INTRNEVACWN-GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 209 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
...++.+.-.. .-...|+++.+- |...+|.++ |.+.+-.+.....
T Consensus 1005 ~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d~~ 1052 (1205)
T KOG1898|consen 1005 REDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPDVS 1052 (1205)
T ss_pred cCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCCcch
Confidence 44444433222 123456666655 455677777 7777776655443
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.5 Score=32.70 Aligned_cols=103 Identities=15% Similarity=0.262 Sum_probs=63.3
Q ss_pred cEEEEEecCCeEEEEECCC--CeEEEEeecCCCCCceeeEEECCCCCEEEEecCC---C---cEEEE---EcC--CceeE
Q 024185 149 KSMLLTTTNNNIYVLDAYG--GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD---G---TLHAW---NIN--TRNEV 215 (271)
Q Consensus 149 ~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~iw---d~~--~~~~~ 215 (271)
+.|+.+.....|.+|++.+ .+...+|..- +.|..+.++..|+|+++--.+ . .+++| ... ...++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 3444445567899999883 3445555433 338899999999999986432 2 45665 211 11121
Q ss_pred E-EecCC---------------------cceeEEEEEec-CCcEEEEeCCeEEEEcCCCCCC
Q 024185 216 A-CWNGN---------------------IGVVACLKWAP-RRAMFVAASSVLSFWIPNPSSN 254 (271)
Q Consensus 216 ~-~~~~~---------------------~~~v~~~~~s~-~~~~l~~~~~~v~iw~~~~~~~ 254 (271)
. .+.|| ..++.+++..| .|++++.+.+.+.+|.+.....
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTI 167 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEE
Confidence 1 22221 23456777766 5777777779999998876554
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.42 E-value=1.4 Score=39.08 Aligned_cols=106 Identities=12% Similarity=0.207 Sum_probs=68.0
Q ss_pred CCCEEEEEecCCeEEEEeCCC-------C-----------CCCcceEEEecCCccceEEEEEc--CCCcEEEEEecCCeE
Q 024185 101 QGLVFAVAMEAGAIKLFDSRS-------Y-----------DKGPFDTFLVGGDTAEVCDIKFS--NDGKSMLLTTTNNNI 160 (271)
Q Consensus 101 ~~~~l~~~~~d~~i~i~d~~~-------~-----------~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~d~~i 160 (271)
+...|+.+.+||.|.+|.+++ . ...|..... -...+..++++ ...+++|+++....|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~---v~~SaWGLdIh~~~~~rlIAVSsNs~~V 189 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR---VGASAWGLDIHDYKKSRLIAVSSNSQEV 189 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee---cCCceeEEEEEecCcceEEEEecCCceE
Confidence 446888999999999997521 1 011222222 23478889998 778888888888888
Q ss_pred EEEECCCC-eEEEEeecCCCCCceeeEEECCCC-----C-EEEEecCCCcEEEEEc
Q 024185 161 YVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDG-----Q-YVVSGSGDGTLHAWNI 209 (271)
Q Consensus 161 ~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-----~-~l~~~~~dg~i~iwd~ 209 (271)
.||-.... +.......+.....|.+++|-++. . ++++++-.|.+.+|++
T Consensus 190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88765432 111111112223448889886543 2 7778888999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=94.41 E-value=2.6 Score=35.24 Aligned_cols=148 Identities=15% Similarity=0.154 Sum_probs=86.1
Q ss_pred CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-----CCcEEEEEecCCeEEEEECCC--Ce-----
Q 024185 102 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-----DGKSMLLTTTNNNIYVLDAYG--GE----- 169 (271)
Q Consensus 102 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~~~d~~~--~~----- 169 (271)
...|++|+.+|.++||+.......+....--..-..+|..+..-+ +...||+ -.-..+.+|.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 468999999999999999765533222222222346777776432 2234444 4456788887721 11
Q ss_pred --EEEEeecCCCCCceeeEEECC----C-CCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 170 --KRCGFSLEPSPNTNTEATFTP----D-GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 170 --~~~~~~~~~~~~~v~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
.+.....|.-+....+++.-| . ..++..-+.||.+.+++-+.-.....++. .--...+.+.|.-..+++++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 112222232222233344433 2 35777889999999999765444444443 22224577888777777776
Q ss_pred -CeEEEEcCCC
Q 024185 242 -SVLSFWIPNP 251 (271)
Q Consensus 242 -~~v~iw~~~~ 251 (271)
..+.-|....
T Consensus 195 s~~l~~Yky~~ 205 (418)
T PF14727_consen 195 SWTLECYKYQD 205 (418)
T ss_pred ceeEEEecHHH
Confidence 5677776533
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.36 E-value=1.4 Score=37.24 Aligned_cols=76 Identities=11% Similarity=0.108 Sum_probs=47.6
Q ss_pred eeeEEECCCCCEEEEecCCCcEEEEE---------cCCceeEEE---e--------cCCcceeEEEEEecCC----cEEE
Q 024185 183 NTEATFTPDGQYVVSGSGDGTLHAWN---------INTRNEVAC---W--------NGNIGVVACLKWAPRR----AMFV 238 (271)
Q Consensus 183 v~~~~~~~~~~~l~~~~~dg~i~iwd---------~~~~~~~~~---~--------~~~~~~v~~~~~s~~~----~~l~ 238 (271)
|..+..++.|..++..+.+|.+.++= ++.|+.... + ....-.+...+|+|+. .+++
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i 185 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL 185 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence 56677889999999888888654432 123432211 1 1112246788999975 3444
Q ss_pred EeC-CeEEEEcCCCCCCCcCC
Q 024185 239 AAS-SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 239 ~~~-~~v~iw~~~~~~~~~~~ 258 (271)
-.+ +.+|+||....+..-..
T Consensus 186 L~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 186 LTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred EecCcEEEEEecCCcchhhcc
Confidence 444 88999999876655333
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.24 Score=44.37 Aligned_cols=144 Identities=13% Similarity=0.184 Sum_probs=81.4
Q ss_pred CCeEEEEeCCC--CCCCcceEEE-ecCCccceEEEEEcC---CCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC----
Q 024185 111 AGAIKLFDSRS--YDKGPFDTFL-VGGDTAEVCDIKFSN---DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---- 180 (271)
Q Consensus 111 d~~i~i~d~~~--~~~~~~~~~~-~~~~~~~v~~~~~s~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---- 180 (271)
-|.+.+||+.- ++..+..... .......+.-+.|.| +.-++..+-.++.+++.+...... ..+..|...
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 36788898753 3332221211 122223445555655 556666777788888776543221 222333321
Q ss_pred -----CceeeEEECCCCCEEEEecCCCcEEEEEc-----CCceeEEEecCCcc-eeEEEEEecCC---------cEEEEe
Q 024185 181 -----NTNTEATFTPDGQYVVSGSGDGTLHAWNI-----NTRNEVACWNGNIG-VVACLKWAPRR---------AMFVAA 240 (271)
Q Consensus 181 -----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-----~~~~~~~~~~~~~~-~v~~~~~s~~~---------~~l~~~ 240 (271)
+.+.--..+|||+.+++++.||.++.|.+ ....+++.++.|.+ +-.|.-++.+. .+++++
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itt 310 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITT 310 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEec
Confidence 11111347999999999999998887765 33455666777763 32232243321 245555
Q ss_pred C---CeEEEEcCCCCCCC
Q 024185 241 S---SVLSFWIPNPSSNS 255 (271)
Q Consensus 241 ~---~~v~iw~~~~~~~~ 255 (271)
+ ..+++|.....++.
T Consensus 311 td~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 311 TDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccCCcceeEeeccchhhh
Confidence 4 45999998887776
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.11 E-value=2.3 Score=38.27 Aligned_cols=69 Identities=12% Similarity=0.228 Sum_probs=45.3
Q ss_pred ceeeEEECCCCCEEEEecCCCcEEEEEcCC----------cee--E-EEe--------cCCcceeEEEEEecCC---c-E
Q 024185 182 TNTEATFTPDGQYVVSGSGDGTLHAWNINT----------RNE--V-ACW--------NGNIGVVACLKWAPRR---A-M 236 (271)
Q Consensus 182 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~--~-~~~--------~~~~~~v~~~~~s~~~---~-~ 236 (271)
.|..+.++|+|++++..|..| |.|..+.. ++. . ..+ ..+...|..+.|+|.+ . +
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 477889999999999888765 44444431 111 1 111 2344578999999964 3 4
Q ss_pred EEEeC-CeEEEEcCCC
Q 024185 237 FVAAS-SVLSFWIPNP 251 (271)
Q Consensus 237 l~~~~-~~v~iw~~~~ 251 (271)
++-.+ +.+|+||+..
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 44344 9999999964
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.01 E-value=3.1 Score=36.86 Aligned_cols=183 Identities=10% Similarity=0.134 Sum_probs=89.7
Q ss_pred cCceEEEEEecCcceeEEEe-cC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC
Q 024185 70 TALEYGIFVLMLASFQGILR-LR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 147 (271)
Q Consensus 70 ~dg~i~iwd~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 147 (271)
..-.|+||+. +|+.+..+. .| ..-.+.|+.+.. |++...+|++++|++......+. ..-.......|..+.+..+
T Consensus 62 a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~-svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 62 ARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESN-SVGFESQMSDIVECRFFHN 138 (829)
T ss_pred cceeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhhccc-ccccccccCceeEEEEecC
Confidence 4456888888 566555543 23 333488887766 55667799999999876553221 0111223345666666666
Q ss_pred CcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEE---CCCCC--EEEEec-CCCcEEEEEcCCce-eEEEecC
Q 024185 148 GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF---TPDGQ--YVVSGS-GDGTLHAWNINTRN-EVACWNG 220 (271)
Q Consensus 148 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~--~l~~~~-~dg~i~iwd~~~~~-~~~~~~~ 220 (271)
|-.++ ..+|++.+-+-.....++++..-... ....-+| .|..+ .++-.. ..+ ..++...+.. ....+..
T Consensus 139 GVavl--t~~g~v~~i~~~~~~~~~~~~diP~~-~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~ 214 (829)
T KOG2280|consen 139 GVAVL--TVSGQVILINGVEEPKLRKMPDIPYN-ELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSW 214 (829)
T ss_pred ceEEE--ecCCcEEEEcCCCcchhhhCCCCCCc-cCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCC
Confidence 64333 44455554432222223333221110 0111222 22111 111111 000 1111111111 1122222
Q ss_pred CcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 221 NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 221 ~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
..+.+..+..||+.++|+--. |.+.+-+.+..+..-+..
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 235678899999999877554 888887777766555444
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=93.93 E-value=2.2 Score=32.69 Aligned_cols=144 Identities=14% Similarity=0.090 Sum_probs=78.6
Q ss_pred EEEEEecCcceeEEEecCCcce--EEEcCCCCEEEEEecC---CeEEEEeCCC--CCCCcceEE-EecCCccceEEEEEc
Q 024185 74 YGIFVLMLASFQGILRLRGRPT--VAFDQQGLVFAVAMEA---GAIKLFDSRS--YDKGPFDTF-LVGGDTAEVCDIKFS 145 (271)
Q Consensus 74 i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d---~~i~i~d~~~--~~~~~~~~~-~~~~~~~~v~~~~~s 145 (271)
-.+||+.+++....--.....| -++-+||+++.+|+.. ..+++++... ......... .+. ....-....--
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence 4589998876533222233344 4677899999988642 3577887654 111000000 011 11222334456
Q ss_pred CCCcEEEEEecCC-eEEEEECCC-CeEEEE--eec----CCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEE
Q 024185 146 NDGKSMLLTTTNN-NIYVLDAYG-GEKRCG--FSL----EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC 217 (271)
Q Consensus 146 ~~~~~l~~~~~d~-~i~~~d~~~-~~~~~~--~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 217 (271)
|||+.|+.|+.+. +..+|.-+. ...... +.. ......--.+...|||+.++.+..+ -.|||..+++.++.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRT 204 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEee
Confidence 7899999888753 345555321 111111 111 1111112336778999999888865 45679888877776
Q ss_pred ecC
Q 024185 218 WNG 220 (271)
Q Consensus 218 ~~~ 220 (271)
++.
T Consensus 205 lP~ 207 (243)
T PF07250_consen 205 LPD 207 (243)
T ss_pred CCC
Confidence 643
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.9 Score=40.49 Aligned_cols=144 Identities=10% Similarity=0.035 Sum_probs=82.6
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEE--------EEecCcce
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGI--------FVLMLASF 84 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~i--------wd~~~~~~ 84 (271)
.+..+.+.+.+.+.....+.......+.+......+.++.+++..-. .|.-||++-. ||.+ +
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slg-------agl~dgt~a~y~rap~gSwd~e---p 618 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLG-------AGLIDGTLAVYGRAPSGSWDGE---P 618 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccc-------cCccCCccccccCCCCCCCCCC---C
Confidence 34556666777666666444444555556666677777777665433 4445555444 4433 1
Q ss_pred eEEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEe---cCCccceEEEEEcCCCcEEEEEecCCe
Q 024185 85 QGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV---GGDTAEVCDIKFSNDGKSMLLTTTNNN 159 (271)
Q Consensus 85 ~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~ 159 (271)
...+... .+...++..| ++.++.+|.|.++...+... ...+ ..|...|+++.+..+|-+++.++.| .
T Consensus 619 ~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~----~~~leahqee~~~Vthm~~~~~gVwvafasG~-~ 690 (925)
T KOG3522|consen 619 NISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIR----SWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-E 690 (925)
T ss_pred ccccccCCccccchhhhhc---eeeeecCCceEEEechhccc----cchhHHHHhhcceEEEEEeeCCceEEEEcCCC-E
Confidence 1121211 2233444322 55667789999999877554 2222 2345679999999888777776655 5
Q ss_pred EEEEECCCCeEEEEe
Q 024185 160 IYVLDAYGGEKRCGF 174 (271)
Q Consensus 160 i~~~d~~~~~~~~~~ 174 (271)
+++++.++-.-...+
T Consensus 691 ~rlfhtetl~hlqd~ 705 (925)
T KOG3522|consen 691 ERLFHTETLWHLQDS 705 (925)
T ss_pred EEEecccccCCcccc
Confidence 666665554433333
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.75 E-value=2.7 Score=33.00 Aligned_cols=140 Identities=10% Similarity=0.037 Sum_probs=85.0
Q ss_pred hhccCceEEEEEecCccee---EEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEE
Q 024185 67 LLTTALEYGIFVLMLASFQ---GILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK 143 (271)
Q Consensus 67 s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 143 (271)
.+..+.-+++.|+.+...- ..+... ...-.|.-.|++.+++..+.-+.+.|+.+.+. |...-++......-..++
T Consensus 101 vad~ssGL~IvDIS~P~sP~~~~~lnt~-gyaygv~vsGn~aYVadlddgfLivdvsdpss-P~lagrya~~~~d~~~v~ 178 (370)
T COG5276 101 VADWSSGLRIVDISTPDSPTLIGFLNTD-GYAYGVYVSGNYAYVADLDDGFLIVDVSDPSS-PQLAGRYALPGGDTHDVA 178 (370)
T ss_pred EEcCCCceEEEeccCCCCcceeccccCC-ceEEEEEecCCEEEEeeccCcEEEEECCCCCC-ceeeeeeccCCCCceeEE
Confidence 4456667899998765432 222322 23345555788888888677788899988763 333444444444445666
Q ss_pred EcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCC-ceeeEEECCCCCEEEEecCCCcEEEEEcCCce
Q 024185 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN-TNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 213 (271)
Q Consensus 144 ~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 213 (271)
.| |++...+..|+-+.+-|+.+..... +.++.+.. .+.++..+++..+++...+ -+.+-|..+.+
T Consensus 179 IS--Gn~AYvA~~d~GL~ivDVSnp~sPv-li~~~n~g~g~~sv~vsdnr~y~vvy~e--gvlivd~s~~s 244 (370)
T COG5276 179 IS--GNYAYVAWRDGGLTIVDVSNPHSPV-LIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIVDVSGPS 244 (370)
T ss_pred Ee--cCeEEEEEeCCCeEEEEccCCCCCe-EEEEEecCCceEEEEecCCeeEEEEccc--ceEEEecCCCC
Confidence 66 6677777789999999997654322 22222221 4777777777666554433 35566655544
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.53 Score=39.08 Aligned_cols=77 Identities=16% Similarity=0.311 Sum_probs=54.0
Q ss_pred CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEec------C--------------CcEEEE-
Q 024185 181 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP------R--------------RAMFVA- 239 (271)
Q Consensus 181 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~------~--------------~~~l~~- 239 (271)
..+.+++.+|++++.++...-|.|.++|+.++..++.++|.... .+.|.. . ..+|+.
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 45788999999998888777799999999999988888765432 122211 1 112222
Q ss_pred eC--CeEEEEcCCCCCCCcCCC
Q 024185 240 AS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 240 ~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+- |.|.||+++.+..+....
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 23 889999999987665443
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=3.5 Score=34.31 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=79.6
Q ss_pred EEEcCCCCEEEEEecCCeEE-EEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe-----
Q 024185 96 VAFDQQGLVFAVAMEAGAIK-LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE----- 169 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~----- 169 (271)
+..++++.+++.+.. |.+. -||--.... ..... .....+..+.+.+++..++++ ..|.+.. ....++
T Consensus 244 v~~~~dG~~~~vg~~-G~~~~s~d~G~~~W---~~~~~-~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~ 316 (398)
T PLN00033 244 VNRSPDGDYVAVSSR-GNFYLTWEPGQPYW---QPHNR-ASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF 316 (398)
T ss_pred EEEcCCCCEEEEECC-ccEEEecCCCCcce---EEecC-CCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence 345677776666653 4333 333321110 11222 234568899999998876655 5565443 333443
Q ss_pred EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec---CCcceeEEEEEecCCcEEEEeC-CeEE
Q 024185 170 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN---GNIGVVACLKWAPRRAMFVAAS-SVLS 245 (271)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~-~~v~ 245 (271)
.............+..+.|.++++.+++| ..|.+.... ..++.-...+ .-......+.|.++++.+++|. |.|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il 394 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLL 394 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEE
Confidence 12222222122347889999888765555 566655543 3444433322 2234678999998888888887 7665
Q ss_pred EE
Q 024185 246 FW 247 (271)
Q Consensus 246 iw 247 (271)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 44
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.65 Score=40.48 Aligned_cols=76 Identities=11% Similarity=0.188 Sum_probs=45.9
Q ss_pred CCCCEEEEEecCCeEEEEeCCC---CCCCcceEEEecC--------------------CccceEEEEEcC----CCcEEE
Q 024185 100 QQGLVFAVAMEAGAIKLFDSRS---YDKGPFDTFLVGG--------------------DTAEVCDIKFSN----DGKSML 152 (271)
Q Consensus 100 ~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~--------------------~~~~v~~~~~s~----~~~~l~ 152 (271)
++...++++..||.+...+... ... ......+.. .......++.++ +..+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~-~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGS-VWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS--EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCC-eeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence 3667788888899888777654 111 011111111 123455666666 678899
Q ss_pred EEecCCeEEEEECCCCeEEEEeec
Q 024185 153 LTTTNNNIYVLDAYGGEKRCGFSL 176 (271)
Q Consensus 153 ~~~~d~~i~~~d~~~~~~~~~~~~ 176 (271)
+.+.|+++|+||+.+++++.+...
T Consensus 235 tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EEETTSEEEEEETTTTCEEEEEET
T ss_pred EEeCCCeEEEEECCCCeEEEEecc
Confidence 999999999999999999776543
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.57 Score=24.41 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=26.3
Q ss_pred CCCcEEEEEec-CCeEEEEECCCCeEEEEeecCCC
Q 024185 146 NDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPS 179 (271)
Q Consensus 146 ~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~ 179 (271)
|++++|+++.. +++|.++|..+++.+..+.....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~ 35 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY 35 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC
Confidence 57777777654 78999999999988888776444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.62 Score=40.60 Aligned_cols=73 Identities=15% Similarity=0.260 Sum_probs=45.6
Q ss_pred CCCcEEEEEecCCeEEEEECCC----CeEEEEe--ecC------------------CCCCceeeEEECC----CCCEEEE
Q 024185 146 NDGKSMLLTTTNNNIYVLDAYG----GEKRCGF--SLE------------------PSPNTNTEATFTP----DGQYVVS 197 (271)
Q Consensus 146 ~~~~~l~~~~~d~~i~~~d~~~----~~~~~~~--~~~------------------~~~~~v~~~~~~~----~~~~l~~ 197 (271)
++...++.+..||.+....... +...... ... .........+.++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788888999988887664 2111111 100 0112355566666 7789999
Q ss_pred ecCCCcEEEEEcCCceeEEEe
Q 024185 198 GSGDGTLHAWNINTRNEVACW 218 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~ 218 (271)
.+.|+.+++||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999996654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=93.28 E-value=3.3 Score=32.61 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=64.5
Q ss_pred CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe------cCCeEEEEECCCCeEEEEeecC---CCCCc
Q 024185 112 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT------TNNNIYVLDAYGGEKRCGFSLE---PSPNT 182 (271)
Q Consensus 112 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~~---~~~~~ 182 (271)
..|.+||..+.+. ...-.+-.+.|+++.|..+.+.++.|. ....+..||+.+..-. .+... .-+.+
T Consensus 16 ~~lC~yd~~~~qW----~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNSQW----SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGP 90 (281)
T ss_pred CEEEEEECCCCEe----ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCc
Confidence 3689999888775 222233457899999997777777664 3456888998766532 23321 12344
Q ss_pred eeeEEEC-CCC-CEEEEec-C--CCcEEEEEcCCceeEEE-ecCCcceeEEEEE
Q 024185 183 NTEATFT-PDG-QYVVSGS-G--DGTLHAWNINTRNEVAC-WNGNIGVVACLKW 230 (271)
Q Consensus 183 v~~~~~~-~~~-~~l~~~~-~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~ 230 (271)
+..+.+. .|+ ++.+.|. . +..|..||-.+...+.. .......|..+.+
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred EEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 6666663 233 3444443 2 33577787655444433 2222334444443
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.18 E-value=4 Score=33.25 Aligned_cols=146 Identities=16% Similarity=0.236 Sum_probs=70.2
Q ss_pred ceEEEcCCCCEEEEEecCCeEEEEeCC--CCCCCcce--EEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe
Q 024185 94 PTVAFDQQGLVFAVAMEAGAIKLFDSR--SYDKGPFD--TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE 169 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 169 (271)
+....+.+...+.+|..+|.|..-+.. .....+.. ......--+.-..++|...+.-|+.+..---+..-+...++
T Consensus 68 p~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~ 147 (376)
T KOG1520|consen 68 PYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGL 147 (376)
T ss_pred ceEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCc
Confidence 334444333345556666666666652 11110110 11111112556678898877556665443233333333332
Q ss_pred EEEEeecCCCC---CceeeEEECCCCCE--------------E---EEecCCCcEEEEEcCCceeEEEecCCcceeEEEE
Q 024185 170 KRCGFSLEPSP---NTNTEATFTPDGQY--------------V---VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLK 229 (271)
Q Consensus 170 ~~~~~~~~~~~---~~v~~~~~~~~~~~--------------l---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 229 (271)
. ..+..+... .....+..+++|.. + +.+..+|.+.-||..+......+++ -.-.+.++
T Consensus 148 a-~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~-L~F~NGla 225 (376)
T KOG1520|consen 148 A-ELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDG-LYFPNGLA 225 (376)
T ss_pred c-eeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhc-cccccccc
Confidence 1 111111110 11222344443322 2 1334567888888766554333332 23357899
Q ss_pred EecCCcEEEEeC
Q 024185 230 WAPRRAMFVAAS 241 (271)
Q Consensus 230 ~s~~~~~l~~~~ 241 (271)
.|||+.+++.+-
T Consensus 226 LS~d~sfvl~~E 237 (376)
T KOG1520|consen 226 LSPDGSFVLVAE 237 (376)
T ss_pred CCCCCCEEEEEe
Confidence 999999999885
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=93.02 E-value=4.4 Score=33.33 Aligned_cols=196 Identities=13% Similarity=0.148 Sum_probs=106.6
Q ss_pred EeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEE----EcCCCCE--EEEEec-C---CeEEEEe
Q 024185 49 RGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVA----FDQQGLV--FAVAME-A---GAIKLFD 118 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~--l~~~~~-d---~~i~i~d 118 (271)
..+..+|...-.-. ++....++-+.+||+ .|+.++.+.....+-+. |.-+|+. |++++. + ..|++|.
T Consensus 57 PAIWvnp~dp~kSl--IigTdK~~GL~VYdL-~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~ 133 (381)
T PF02333_consen 57 PAIWVNPADPAKSL--IIGTDKKGGLYVYDL-DGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFR 133 (381)
T ss_dssp EEEE--SS-GGG-E--EEEEETTTEEEEEET-TS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEE
T ss_pred CcEecCCCCcccce--EEEEeCCCCEEEEcC-CCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEE
Confidence 34666654432111 556677888999999 56667777544332221 2224443 444442 2 4688997
Q ss_pred CCCCCCCcceEEE-----ecCCccceEEEEE--cC-CCc-EEEEEecCCeEEEEECC---CC----eEEEEeecCCCCCc
Q 024185 119 SRSYDKGPFDTFL-----VGGDTAEVCDIKF--SN-DGK-SMLLTTTNNNIYVLDAY---GG----EKRCGFSLEPSPNT 182 (271)
Q Consensus 119 ~~~~~~~~~~~~~-----~~~~~~~v~~~~~--s~-~~~-~l~~~~~d~~i~~~d~~---~~----~~~~~~~~~~~~~~ 182 (271)
+..... .+.... +......+..+++ +| +|. +++....+|.+..|.+. .+ +.++.|.... .
T Consensus 134 id~~~g-~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s---Q 209 (381)
T PF02333_consen 134 IDPDTG-ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS---Q 209 (381)
T ss_dssp EETTTT-EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS----
T ss_pred ecCCCC-cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC---c
Confidence 753221 111111 0011123555555 44 455 45566778988888774 33 4577777644 3
Q ss_pred eeeEEECCCCCEEEEecCCCcEEEEEcCC-----ceeEEEecC--CcceeEEEEEec--CC-cEEEEeC---CeEEEEcC
Q 024185 183 NTEATFTPDGQYVVSGSGDGTLHAWNINT-----RNEVACWNG--NIGVVACLKWAP--RR-AMFVAAS---SVLSFWIP 249 (271)
Q Consensus 183 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~--~~~~v~~~~~s~--~~-~~l~~~~---~~v~iw~~ 249 (271)
+..+..+....+|+.+-++.-|.-|+... ++.+....+ ....|..++.-. ++ .||+.+| ++..+|+.
T Consensus 210 ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 210 PEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred ceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 78888888888999999987787787652 223333322 345678888754 33 3666665 67999998
Q ss_pred CC
Q 024185 250 NP 251 (271)
Q Consensus 250 ~~ 251 (271)
+.
T Consensus 290 ~~ 291 (381)
T PF02333_consen 290 EG 291 (381)
T ss_dssp ST
T ss_pred CC
Confidence 65
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.66 Score=41.27 Aligned_cols=142 Identities=13% Similarity=0.045 Sum_probs=86.7
Q ss_pred EEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEE--------EECCCCeEEEEee
Q 024185 104 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV--------LDAYGGEKRCGFS 175 (271)
Q Consensus 104 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~--------~d~~~~~~~~~~~ 175 (271)
.+..|+.++.+.++.-..+..+.............+.++.+++. .+..|..||++-. ||.+ +...+
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~e---p~~~~- 622 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGE---PNISI- 622 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCC---Ccccc-
Confidence 57788889999999876333211111112233356677776653 2444445555444 4432 11111
Q ss_pred cCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecC---CcceeEEEEEecCCcEEEEeCCe-EEEEcCCC
Q 024185 176 LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG---NIGVVACLKWAPRRAMFVAASSV-LSFWIPNP 251 (271)
Q Consensus 176 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~-v~iw~~~~ 251 (271)
+.+..++.+.++..| ++.++.+|.+.++...+......... |...|+++....+|-+++.++|+ ++.++.++
T Consensus 623 -~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 623 -PTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTET 698 (925)
T ss_pred -ccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccc
Confidence 222234666777655 67788899999999887666555433 45679999999888888888854 77776666
Q ss_pred CCCC
Q 024185 252 SSNS 255 (271)
Q Consensus 252 ~~~~ 255 (271)
....
T Consensus 699 l~hl 702 (925)
T KOG3522|consen 699 LWHL 702 (925)
T ss_pred cCCc
Confidence 5443
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.81 Score=23.51 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=19.8
Q ss_pred CccceEEEEEcCCCcEEEEEec-C--CeEEEE
Q 024185 135 DTAEVCDIKFSNDGKSMLLTTT-N--NNIYVL 163 (271)
Q Consensus 135 ~~~~v~~~~~s~~~~~l~~~~~-d--~~i~~~ 163 (271)
....-....|||||+.|+.++. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4456778899999999887765 4 444444
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.013 Score=48.30 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=82.8
Q ss_pred eEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEE-EEecCCeEEEEeCCCCCCCcceE
Q 024185 51 LFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDT 129 (271)
Q Consensus 51 ~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~ 129 (271)
..|-|.+.. ++.++.+..+..||-........-.....-.++|..++..++ .+-..+.+++||+.+... +.
T Consensus 40 ~~w~~e~~n-----lavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt---qq 111 (615)
T KOG2247|consen 40 HRWRPEGHN-----LAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT---QQ 111 (615)
T ss_pred eeEecCCCc-----eehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH---HH
Confidence 445566655 556677777777776432221111122223378888886554 456678999999987542 12
Q ss_pred EEecC-CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCE
Q 024185 130 FLVGG-DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 130 ~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 194 (271)
....+ |.... +.|++.+..++.+...|.+.+++..+.+.......|... ++++++.+.+..
T Consensus 112 LE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RR--gtq~av~lEd~v 173 (615)
T KOG2247|consen 112 LESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRR--GTQIAVTLEDYV 173 (615)
T ss_pred HhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccc--eeEEEeccccee
Confidence 22222 22222 789999999999999999999998776655444434443 777888877643
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=92.35 E-value=5.9 Score=33.17 Aligned_cols=183 Identities=15% Similarity=0.184 Sum_probs=97.4
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcce-EEEcCCCCEEEEEecCCeEEEEeCCCC-------------------CC
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSY-------------------DK 124 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~-------------------~~ 124 (271)
+..-+.||.+.+|+-+.-.....++..-.+. +.+.+..+.|++++.+..+.-|....- ..
T Consensus 148 IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k 227 (418)
T PF14727_consen 148 ICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGK 227 (418)
T ss_pred EEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccc
Confidence 4567889999999887766555555543343 899998888999988888888864210 00
Q ss_pred CcceEEE--ecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEE------CCCC-CEE
Q 024185 125 GPFDTFL--VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF------TPDG-QYV 195 (271)
Q Consensus 125 ~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~------~~~~-~~l 195 (271)
.....+. +...--.+..+.++.....+++-+ ..++.+.+. +|+.....+....+ .....| .|+. ..+
T Consensus 228 ~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~G~l~~~krLd~~p--~~~~~Y~~~~~~~~~~~~~l 303 (418)
T PF14727_consen 228 KLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-NGSLRFQKRLDYNP--SCFCPYRVPWYNEPSTRLNL 303 (418)
T ss_pred cccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-CCeEEEEEecCCce--eeEEEEEeecccCCCCceEE
Confidence 1111122 111112233444443333444444 345666663 56554444433332 111111 2221 247
Q ss_pred EEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEe---cCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 196 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA---PRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 196 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
+.++.++.+.||.= .+.+........+| ++... .-...+++-+ |.+.+--+-|...
T Consensus 304 lV~t~t~~LlVy~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 304 LVGTHTGTLLVYED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred EEEecCCeEEEEeC--CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence 88889999999863 33333333222332 33322 2223444444 7888777666543
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.34 E-value=5.2 Score=37.89 Aligned_cols=148 Identities=14% Similarity=0.152 Sum_probs=83.0
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEE--------EcCCCcEEEEEecCCeEEEEECC-
Q 024185 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK--------FSNDGKSMLLTTTNNNIYVLDAY- 166 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~d~~i~~~d~~- 166 (271)
+-+-|.=++... +-|+.+.+|+.+++.. ...+.+-...|..+. |.|.=++++..+.--.|.++-+.
T Consensus 84 mGiFpeI~RaWi-TiDn~L~lWny~~~~e----~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 84 MGIFPEIGRAWI-TIDNNLFLWNYESDNE----LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSF 158 (1311)
T ss_pred eccchhhcceEE-EeCCeEEEEEcCCCCc----cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEe
Confidence 444444333222 3478999999988543 223334344455443 33333444444444455555432
Q ss_pred ---CCeE---EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC----C---ce-e----------------EE
Q 024185 167 ---GGEK---RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN----T---RN-E----------------VA 216 (271)
Q Consensus 167 ---~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~---~~-~----------------~~ 216 (271)
++.. ...+.....+..|.++....+|+.+++|- || .+|.+. + ++ + +.
T Consensus 159 ~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 159 DEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred ccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 1111 11133334445688899888888666655 44 455431 1 11 1 11
Q ss_pred Eec-CCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 217 CWN-GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 217 ~~~-~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
.+. .+..+|..++.......+.+-+ +.+.+|++..
T Consensus 236 ~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 123 4567899999988777777777 8899999977
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=92.23 E-value=6.8 Score=33.61 Aligned_cols=110 Identities=15% Similarity=0.235 Sum_probs=58.9
Q ss_pred EEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC-CceeeEEECCCCCEEEEecC-------------CCcEEEE
Q 024185 142 IKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-NTNTEATFTPDGQYVVSGSG-------------DGTLHAW 207 (271)
Q Consensus 142 ~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-------------dg~i~iw 207 (271)
+...++|.+++... ..+..+|+- |+.+..+...... ..-..+...|+|++|+.+.. ...|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66788998776555 788899974 6666665544321 11234777899999987771 1236666
Q ss_pred EcCCceeEEEec--CC----c---------------------ceeEEEEEec-CCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 208 NINTRNEVACWN--GN----I---------------------GVVACLKWAP-RRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 208 d~~~~~~~~~~~--~~----~---------------------~~v~~~~~s~-~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
| .+|+.+..+. .| . ..++++.+.+ ++.+++++- ..|...|.+++++.
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence 6 7777766541 01 0 2478999999 666666665 56777776666543
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=92.15 E-value=5.4 Score=32.26 Aligned_cols=100 Identities=21% Similarity=0.336 Sum_probs=60.1
Q ss_pred eEEEcCCCCEEEEEecC------CeEEEEeCCCCCCCcceEEEe-------------cCCccceEEEEEcCCCcEEEEEe
Q 024185 95 TVAFDQQGLVFAVAMEA------GAIKLFDSRSYDKGPFDTFLV-------------GGDTAEVCDIKFSNDGKSMLLTT 155 (271)
Q Consensus 95 ~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~ 155 (271)
.+++.+++.++++.-.+ ..|..++.. ++. ...+.+ .......-.++++|+|+.|+++.
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~--~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRV--IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-Ccc--cceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 47787788877777666 678888876 332 111111 12345688999999999777664
Q ss_pred c-----CC-----------eEEEEECCC-CeEEEE--eecCC-----CCCceeeEEECCCCCEEEE
Q 024185 156 T-----NN-----------NIYVLDAYG-GEKRCG--FSLEP-----SPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 156 ~-----d~-----------~i~~~d~~~-~~~~~~--~~~~~-----~~~~v~~~~~~~~~~~l~~ 197 (271)
+ |+ .+..||..+ ++.... +.... ....+..+.+-+++++++.
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 3 22 233455444 322222 22221 2345888999999987763
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.14 E-value=2.7 Score=39.63 Aligned_cols=141 Identities=14% Similarity=0.136 Sum_probs=81.4
Q ss_pred hccCceEEEEEecCcceeEEEecCCcce--EE--------EcCCCCEEEEEecCCeEEEEeCC----CCCCCcc-eEEEe
Q 024185 68 LTTALEYGIFVLMLASFQGILRLRGRPT--VA--------FDQQGLVFAVAMEAGAIKLFDSR----SYDKGPF-DTFLV 132 (271)
Q Consensus 68 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~--------~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~-~~~~~ 132 (271)
.+.|..+.+|+.+++...+.+.+-+... +. |.|.=+++..-+.--.|.++-+. ++....+ ..+.+
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 3668999999999977777665543222 11 22233444444445556665442 2222111 11233
Q ss_pred cCCccceEEEEEcCCCcEEEEEecCCeEEEEEC----CCC---e-E-------------EEE-eecC-CCCCceeeEEEC
Q 024185 133 GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA----YGG---E-K-------------RCG-FSLE-PSPNTNTEATFT 189 (271)
Q Consensus 133 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~----~~~---~-~-------------~~~-~~~~-~~~~~v~~~~~~ 189 (271)
......|.|+....+|+.+++ +.|| .+|.+ .++ + + +.+ ++.. ....+|..+..+
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~-G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFA-GRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEe-ecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 333567899998888886555 4555 34443 111 1 1 000 0111 112348888888
Q ss_pred CCCCEEEEecCCCcEEEEEcCC
Q 024185 190 PDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 190 ~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
...+.+.+-++.|+|.+||+..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 8888999999999999999975
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=92.10 E-value=6.7 Score=33.25 Aligned_cols=105 Identities=12% Similarity=0.186 Sum_probs=59.5
Q ss_pred CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE--EEEee---cCCCCCceeeEEECCCC------CEEEEec----
Q 024185 135 DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK--RCGFS---LEPSPNTNTEATFTPDG------QYVVSGS---- 199 (271)
Q Consensus 135 ~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~---~~~~~~~v~~~~~~~~~------~~l~~~~---- 199 (271)
.-.....++|.|||+.|++--..|.|++++..++.. +..+. ..........++++|+- .+|+...
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 345678899999998666544469999998655432 21111 11123457889999874 2343321
Q ss_pred ------CCCcEEEEEcCCc-------eeEE-Ee---cCCcceeEEEEEecCCcEEEEeC
Q 024185 200 ------GDGTLHAWNINTR-------NEVA-CW---NGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 200 ------~dg~i~iwd~~~~-------~~~~-~~---~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
....|.-|.+... +.+. .+ ..|.+ ..|.|.|||.+.++.+
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~G--grI~FgPDG~LYVs~G 164 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNG--GRLVFGPDGKIYYTIG 164 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCC--ceEEECCCCcEEEEEC
Confidence 1234555554321 1111 12 12443 5788999998766554
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=91.95 E-value=4.1 Score=30.43 Aligned_cols=142 Identities=9% Similarity=0.024 Sum_probs=79.3
Q ss_pred CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC---C---eEEEEE-CC----CCeEE
Q 024185 103 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---N---NIYVLD-AY----GGEKR 171 (271)
Q Consensus 103 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~---~i~~~d-~~----~~~~~ 171 (271)
+.|+.+.....|.+|++.+.+..+...+. .-+.|..+.++..|+++++--.+ . .+|+|= .+ ..+++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~---Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS---TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc---chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 44545466778999999955553333333 23789999999999999987432 2 566652 21 11222
Q ss_pred E-EeecCCC-------------------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee-EE-----Eec-----C
Q 024185 172 C-GFSLEPS-------------------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE-VA-----CWN-----G 220 (271)
Q Consensus 172 ~-~~~~~~~-------------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~-----~~~-----~ 220 (271)
+ ++-+|.. ...+.+++-.|-.--|+.|+. +.+.+|.+..... .. .+. -
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~ 184 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDH 184 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhhe
Confidence 2 1222110 123556666665333555553 4788888764433 11 111 1
Q ss_pred C-cceeEEEEEecCCcEEEEeC-CeEEEEcCC
Q 024185 221 N-IGVVACLKWAPRRAMFVAAS-SVLSFWIPN 250 (271)
Q Consensus 221 ~-~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~ 250 (271)
| +.....+++. +.++|..+ ..+++..+.
T Consensus 185 ~~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 185 IDNFKPTQVAIC--EGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred ecCceEEEEEEE--eeEEEEecCCEEEEEEEe
Confidence 1 1224455554 56888888 667776553
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=91.86 E-value=8.7 Score=34.06 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=88.4
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCcc------ceEEEEEcCCCcEEEEEec-C---CeEEE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA------EVCDIKFSNDGKSMLLTTT-N---NNIYV 162 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~~-d---~~i~~ 162 (271)
+-.+.+.++++.+++...+|.|.+||.............. .+.. -|.....-....++++.+. + -..++
T Consensus 132 vv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~-~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL 210 (670)
T PF10395_consen 132 VVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKL-KSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKL 210 (670)
T ss_pred eEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccc-ccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEE
Confidence 3447888999999999999999999994433211111111 1111 1122111122344554443 2 34677
Q ss_pred EECC-CCeEEEEee---cCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC-----c-ceeEEEEEec
Q 024185 163 LDAY-GGEKRCGFS---LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-----I-GVVACLKWAP 232 (271)
Q Consensus 163 ~d~~-~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~-~~v~~~~~s~ 232 (271)
+.+. +......+. .+.....-..+++. +|+..-. .++.|.+|++.+.+..+++.-. . ..+.++.--.
T Consensus 211 ~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s 287 (670)
T PF10395_consen 211 ISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS 287 (670)
T ss_pred EEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC
Confidence 7771 122222221 11111011123443 4543333 6779999999888776665321 1 2233443222
Q ss_pred CCcEEEEeCCeEEEEcCCCCCCCcCCC
Q 024185 233 RRAMFVAASSVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 233 ~~~~l~~~~~~v~iw~~~~~~~~~~~~ 259 (271)
..+.|++..+.|++.|+.-...+.+.+
T Consensus 288 ~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 288 PNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 456777777999999998887777666
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.54 E-value=2.8 Score=35.03 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=73.3
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE----ecC--CcceEEEcCCCCEEEEEecCC
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL----RLR--GRPTVAFDQQGLVFAVAMEAG 112 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~--~~~~~~~~~~~~~l~~~~~d~ 112 (271)
.+-...++++.++.||+|.+. +|.--.+++|.+++....+....+ +.. ++....|+.+ .-+|.-...|
T Consensus 60 Sfdm~d~G~I~SIkFSlDnki-----lAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G 133 (657)
T KOG2377|consen 60 SFDMDDKGEIKSIKFSLDNKI-----LAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG 133 (657)
T ss_pred eeeecCCCceeEEEeccCcce-----EEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC
Confidence 333455679999999999998 778889999999998544433222 112 2344777765 4466555444
Q ss_pred eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec--CCeEEEEECCCC
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGG 168 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~ 168 (271)
+.+|.....+. .....+.|...|.-..|.++.+.++.++. .+++.=+.++++
T Consensus 134 -~e~y~v~pekr---slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 134 -IEFYQVLPEKR---SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred -eEEEEEchhhh---hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 55554433221 13335567788999999998776554432 333333444433
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=90.95 E-value=1.2 Score=22.81 Aligned_cols=25 Identities=24% Similarity=0.696 Sum_probs=17.2
Q ss_pred eeeEEECCCCCEEEEecC-C--CcEEEE
Q 024185 183 NTEATFTPDGQYVVSGSG-D--GTLHAW 207 (271)
Q Consensus 183 v~~~~~~~~~~~l~~~~~-d--g~i~iw 207 (271)
-....|+|||++|+.++. + |.-.||
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 667999999998886654 4 555554
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=90.77 E-value=1.7 Score=27.51 Aligned_cols=44 Identities=14% Similarity=-0.127 Sum_probs=31.5
Q ss_pred hhhhccCceEEEEEecCcceeEEEec-CCcceEEEcCCCCEEEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRL-RGRPTVAFDQQGLVFAVA 108 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 108 (271)
++.+..+|.+.-||..+++....+.+ .-.+.+++++|+++++.+
T Consensus 30 ~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 30 LLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp HHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred eecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 67888999999999999886555544 345669999999987776
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.52 E-value=1.8 Score=36.08 Aligned_cols=170 Identities=15% Similarity=0.099 Sum_probs=94.4
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee-EEE----ec---CCcc-eEEEcCCCCEEEEEe
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ-GIL----RL---RGRP-TVAFDQQGLVFAVAM 109 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~----~~---~~~~-~~~~~~~~~~l~~~~ 109 (271)
+.+...-..+..+...|+|+.+++ .++ ..+.++++.+.... +.+ ++ |.+. .+..-..|.-+.+++
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv---~~g---~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~ 287 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYV---RTG---SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVH 287 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEE---ecC---CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEc
Confidence 334444556777888999997543 122 56788887654321 111 11 1121 122333566788888
Q ss_pred cCCeEEEE-eCCCCCCCcc-eEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEE
Q 024185 110 EAGAIKLF-DSRSYDKGPF-DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 187 (271)
Q Consensus 110 ~d~~i~i~-d~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~ 187 (271)
.||-|.-| |.+.+....+ +...++-...++..+.-..+.+-+++-+.+|++..+.....+.+-.-..... ..-++
T Consensus 288 ~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~---~~~~~ 364 (733)
T COG4590 288 EDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQA---PQLVA 364 (733)
T ss_pred CCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcC---cceee
Confidence 89988877 5544332111 1111211223344443333455677778888888877544433322121222 44489
Q ss_pred ECCCCCEEEEecCCCcEEEEEcCCceeEEEe
Q 024185 188 FTPDGQYVVSGSGDGTLHAWNINTRNEVACW 218 (271)
Q Consensus 188 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 218 (271)
+||++.++++-. .|.++++.+++..+-.++
T Consensus 365 ~Sp~~~~Ll~e~-~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 365 MSPNQAYLLSED-QGKIRLAQLENRNPEISW 394 (733)
T ss_pred eCcccchheeec-CCceEEEEecCCCCCccH
Confidence 999999888644 467999988776554433
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.24 E-value=5.8 Score=35.69 Aligned_cols=106 Identities=9% Similarity=0.158 Sum_probs=57.0
Q ss_pred eEEEEEcCCCcEEEEEecCC-----eEEEEEC---CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC
Q 024185 139 VCDIKFSNDGKSMLLTTTNN-----NIYVLDA---YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210 (271)
Q Consensus 139 v~~~~~s~~~~~l~~~~~d~-----~i~~~d~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 210 (271)
-..++|-|+|..+++-..|| .+..+.. +.|+.-....... .....+|+-....++. ...+.+++|-..
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dE---k~~~~~wn~~s~vlav-~~~n~~~lwttk 324 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDE---KAFLENWNLLSTVLAV-AEGNLLKLWTTK 324 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchh---hhhhhhhhHHHHHHHH-hhcceEEEEEcc
Confidence 34589999999999876544 3555542 1122111111111 1344666655544433 345689999876
Q ss_pred CceeEEEecCCcceeEEEEEecCC--cEEEEeCCeEEEEc
Q 024185 211 TRNEVACWNGNIGVVACLKWAPRR--AMFVAASSVLSFWI 248 (271)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~v~iw~ 248 (271)
+-.-.-...-.-..+.-+.|+|.. .++++.++.|..-+
T Consensus 325 NyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~ 364 (1243)
T COG5290 325 NYHWYLKVERQIPGISYVKWHPEEKNTLLFRDGERILRVF 364 (1243)
T ss_pred ceEEEEEEeecCCCcceeeeccccCcEEEEecCCeEEEEE
Confidence 644333332233446778999953 35555555544433
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=90.14 E-value=13 Score=34.11 Aligned_cols=121 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred cCCcceEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceE-----------EEEEcCCCcEEEEEecC
Q 024185 90 LRGRPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC-----------DIKFSNDGKSMLLTTTN 157 (271)
Q Consensus 90 ~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~-----------~~~~s~~~~~l~~~~~d 157 (271)
+.....++|+| +.+.||+....|...+|++............+.....+-. .+.|.++.+.|+.++..
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~ 224 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS 224 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC
Q 024185 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
.+.++|+++......+........|..+.-+|+..-.+.--....|...|+..
T Consensus 225 -~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 225 -KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred -ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
|
These proteins are found in fungi. |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=90.10 E-value=10 Score=31.86 Aligned_cols=29 Identities=14% Similarity=0.513 Sum_probs=24.6
Q ss_pred eeeEEECCCCCEEEEecCCCcEEEEEcCC
Q 024185 183 NTEATFTPDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 183 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
+..+...+..+.+++...+|.|.+|++..
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 78888888889999999999999999974
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=89.83 E-value=1.5 Score=27.73 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=29.9
Q ss_pred ecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 198 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
+..+|.+.-||..+++....+.+-. -.+.++.+||+.+++.+-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLY-FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCEEEEEe
Confidence 3446789999999988766555433 358999999999888775
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=89.75 E-value=11 Score=31.52 Aligned_cols=111 Identities=12% Similarity=0.157 Sum_probs=59.9
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCC---cceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG---PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 168 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 168 (271)
....+.+.+++..++++ ..|.+.. ....++.. .+...........+.++.|.+++..+ .++..|.+.... ..|
T Consensus 282 ~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~-a~G~~G~v~~s~-D~G 357 (398)
T PLN00033 282 RIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAW-AAGGSGILLRST-DGG 357 (398)
T ss_pred ceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEE-EEECCCcEEEeC-CCC
Confidence 34568888898877655 4566543 33333210 11121111122458899999887754 455567665553 444
Q ss_pred eEEEEee-cCCCCCceeeEEECCCCCEEEEecCCCcEEEE
Q 024185 169 EKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW 207 (271)
Q Consensus 169 ~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 207 (271)
+.-.... ...-+.....+.|.++++.+++| .+|.|.-|
T Consensus 358 ~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 358 KSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred cceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 4322222 12122347788987777665554 46666544
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=89.68 E-value=10 Score=31.20 Aligned_cols=184 Identities=13% Similarity=-0.002 Sum_probs=0.0
Q ss_pred hhhhccCceEEEEEecCcceeEEEecC----CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc-cce
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLR----GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT-AEV 139 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~v 139 (271)
+..+..+|.+.-.|.+++..+...... ....-.+..+|+ ++.++.++.++.+|..+++. ........ ..+
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~----~W~~~~~~~~~~ 145 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL----VWSRNVGGSPYY 145 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE----EEEEecCCCeEE
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCC-CCCceeeEEECCCCCEEEEecC--CCcEEEEEcCCceeEE
Q 024185 140 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP-SPNTNTEATFTPDGQYVVSGSG--DGTLHAWNINTRNEVA 216 (271)
Q Consensus 140 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~ 216 (271)
..-..-.++..+... .++.+.-.|..+++.+....... ....+..-.. .....++.+.. ++.+.-.|..+|....
T Consensus 146 ~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w 223 (370)
T COG1520 146 ASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKW 223 (370)
T ss_pred ecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEee
Q ss_pred E----ecCC------cceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCC
Q 024185 217 C----WNGN------IGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNS 255 (271)
Q Consensus 217 ~----~~~~------~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~ 255 (271)
. .... ...+..-...-++.....+. +.+...+..+++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 224 SQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceE
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.43 E-value=9.1 Score=30.21 Aligned_cols=148 Identities=12% Similarity=0.116 Sum_probs=90.6
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE---EE
Q 024185 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK---RC 172 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~---~~ 172 (271)
+.++ +++.+.+..+.-++|.|+.+... |...-.+. -.+.-.++ .-.|++...+..|.-+.+.|+.+.+. ..
T Consensus 92 v~vs--e~yvyvad~ssGL~IvDIS~P~s-P~~~~~ln-t~gyaygv--~vsGn~aYVadlddgfLivdvsdpssP~lag 165 (370)
T COG5276 92 VRVS--EEYVYVADWSSGLRIVDISTPDS-PTLIGFLN-TDGYAYGV--YVSGNYAYVADLDDGFLIVDVSDPSSPQLAG 165 (370)
T ss_pred eEec--ccEEEEEcCCCceEEEeccCCCC-cceecccc-CCceEEEE--EecCCEEEEeeccCcEEEEECCCCCCceeee
Confidence 4554 56677777778899999998774 32222222 11233343 44578888888666678889876543 22
Q ss_pred EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec--CCcceeEEEEEecCCcEEEEeCCeEEEEcCC
Q 024185 173 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAPRRAMFVAASSVLSFWIPN 250 (271)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~v~iw~~~ 250 (271)
++...... -..++.| |++...+..|+-+.+.|+.+.....-+. .....+.++..+++.-+++....-+.+-|..
T Consensus 166 rya~~~~d--~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s 241 (370)
T COG5276 166 RYALPGGD--THDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVS 241 (370)
T ss_pred eeccCCCC--ceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEEecC
Confidence 23222221 2335554 6677778889999999998654433221 1223578888888877777776556666655
Q ss_pred CCC
Q 024185 251 PSS 253 (271)
Q Consensus 251 ~~~ 253 (271)
+.+
T Consensus 242 ~~s 244 (370)
T COG5276 242 GPS 244 (370)
T ss_pred CCC
Confidence 543
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.42 E-value=2.4 Score=31.49 Aligned_cols=117 Identities=18% Similarity=0.170 Sum_probs=66.9
Q ss_pred CCcEEEEEec--CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEE-EEecCCCcEEEEEcCCceeEEEecCCcc
Q 024185 147 DGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV-VSGSGDGTLHAWNINTRNEVACWNGNIG 223 (271)
Q Consensus 147 ~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 223 (271)
+|.++.+.+. ...|+.||+++++.+..-+..... +..=-...-|.++ ...-.+|.-..+|.++.+++..+.- .+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~--~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDT--VFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCcc--ccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CC
Confidence 4555666554 557999999999987765544211 1111111112333 3344578889999999888877653 22
Q ss_pred eeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC----CCCcccccc
Q 024185 224 VVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES----TDPQATVKS 268 (271)
Q Consensus 224 ~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~----~~~~~~~~~ 268 (271)
.=+.++- |+.-|+.++ ..++.-|.++.......+ ..|+..+.|
T Consensus 132 eGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNE 180 (262)
T COG3823 132 EGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNE 180 (262)
T ss_pred cceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccc
Confidence 2345543 444455554 558887887765544332 345555443
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=89.21 E-value=9.7 Score=30.24 Aligned_cols=166 Identities=16% Similarity=0.173 Sum_probs=90.1
Q ss_pred hhhhccCceEEEEEecCcce-----eEEEecC---Ccce-EEEcC--CCCEEEEE-ecCCeEEEEeCCCCCCC-------
Q 024185 65 LVLLTTALEYGIFVLMLASF-----QGILRLR---GRPT-VAFDQ--QGLVFAVA-MEAGAIKLFDSRSYDKG------- 125 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~-----~~~~~~~---~~~~-~~~~~--~~~~l~~~-~~d~~i~i~d~~~~~~~------- 125 (271)
++-+++||+|.-|...-+.. ...+... .++- +++.. .+.+|+.+ -.+++|.++|-.-.+..
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 56778999999998533222 1122211 1221 55543 35667666 46789999986533210
Q ss_pred --------cceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECC------C
Q 024185 126 --------PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP------D 191 (271)
Q Consensus 126 --------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~------~ 191 (271)
|+.+..+. ..-.|+-..-.++.+.=..+..-|.|-+||+ .++.++++.....-.....++..| .
T Consensus 183 P~iPagyAPFnIqnig-~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 183 PALPAGYAPFNVQNLG-GTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCcceEEEC-CeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 00000000 0001111111222222222333478999996 477788775433323345566654 3
Q ss_pred CCEEEEecCCCcEEEEEcCCceeEEEecCCcc------eeEEEEEec
Q 024185 192 GQYVVSGSGDGTLHAWNINTRNEVACWNGNIG------VVACLKWAP 232 (271)
Q Consensus 192 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~s~ 232 (271)
+.+|+---.||+|..+|..+++.+-.+....+ ..+.++|..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 55565555699999999999998877754332 356777755
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=89.05 E-value=5.6 Score=27.27 Aligned_cols=113 Identities=10% Similarity=0.145 Sum_probs=64.3
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCCC------CcceEEEecCCccceEEEEEcC-----CCcEEEEEecCCeEEEEEC
Q 024185 97 AFDQQGLVFAVAMEAGAIKLFDSRSYDK------GPFDTFLVGGDTAEVCDIKFSN-----DGKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 97 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~~~d~ 165 (271)
.|.....-|++++..|.|.|++...... ..+.... -...|++++-.+ +...|+.|+. ..+..||+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN---in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN---INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE---CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 4555555688888889999998764421 1122222 235677775433 3456666664 47999999
Q ss_pred CCCeEEEEeecCCCCCceeeEEE---CC-CCCEEEEecCCCcEEEEEcCCceeEEE
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATF---TP-DGQYVVSGSGDGTLHAWNINTRNEVAC 217 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~---~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 217 (271)
.+..-+..-..+.+ +.++.+ .. +..+++.|+ +-.|.-+|..-.+...+
T Consensus 81 ~~N~d~Fyke~~DG---vn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 81 ENNSDLFYKEVPDG---VNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred ccCchhhhhhCccc---eeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 87765543333333 555555 22 233444443 45677777654444333
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.80 E-value=17 Score=32.57 Aligned_cols=38 Identities=11% Similarity=0.275 Sum_probs=31.8
Q ss_pred ceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec
Q 024185 182 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 182 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 219 (271)
.+..+..||+.++|+.=...|.|.+-+....+....+.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 37789999999999999999999999887777666654
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=88.62 E-value=6.6 Score=28.39 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=22.2
Q ss_pred ceeEEEEEecCC------cEEEEeC--CeEEEEcCCCC
Q 024185 223 GVVACLKWAPRR------AMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 223 ~~v~~~~~s~~~------~~l~~~~--~~v~iw~~~~~ 252 (271)
..+.+++|||.| .+|++.. +.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 368999999954 3566554 88999987753
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=88.31 E-value=5.1 Score=36.64 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=52.2
Q ss_pred EEEEe-cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEE-ecCCC-----cEEEEEcCC-ceeEEEecCCc
Q 024185 151 MLLTT-TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS-GSGDG-----TLHAWNINT-RNEVACWNGNI 222 (271)
Q Consensus 151 l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg-----~i~iwd~~~-~~~~~~~~~~~ 222 (271)
|+... ..+.|.+-|.........-..+.. .+.+.+|||||++++. .+.++ .|++-|+.+ +..+..++-..
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~~~ve~~~~~--~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~ 398 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGASRAVEIEDTI--SVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN 398 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCceEEEecCCC--ceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc
Confidence 44444 335888888765444332022333 3888999999999997 44443 488888875 33345555556
Q ss_pred ceeEEEEEecCCcE
Q 024185 223 GVVACLKWAPRRAM 236 (271)
Q Consensus 223 ~~v~~~~~s~~~~~ 236 (271)
..|..-...++|..
T Consensus 399 aaiprwrv~e~gdt 412 (912)
T TIGR02171 399 AAIPRWRVLENGDT 412 (912)
T ss_pred ccccceEecCCCCe
Confidence 66666666666653
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=87.82 E-value=1.9 Score=20.94 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=20.5
Q ss_pred EEEEEecCCeEEEEECCCCeEEEEe
Q 024185 150 SMLLTTTNNNIYVLDAYGGEKRCGF 174 (271)
Q Consensus 150 ~l~~~~~d~~i~~~d~~~~~~~~~~ 174 (271)
.+++++.+|.+..+|.++|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777888999999999998876543
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.57 E-value=14 Score=30.06 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=63.6
Q ss_pred ccceEEEEEcCCCcEEEEEecCCeEEE-EECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee
Q 024185 136 TAEVCDIKFSNDGKSMLLTTTNNNIYV-LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 214 (271)
Q Consensus 136 ~~~v~~~~~s~~~~~l~~~~~d~~i~~-~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 214 (271)
...+.++.+.|++.+++++. .|.+.. +| ..++.-..... .....+..+.+.|+++.++.+ ..|.+.+=....+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeC-CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45788999999987665544 555443 22 22221122221 222348889999999877665 456654322333333
Q ss_pred EEEecC----CcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCC
Q 024185 215 VACWNG----NIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSS 253 (271)
Q Consensus 215 ~~~~~~----~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~ 253 (271)
-..... ....+.++.+.|+++.++++. |.+. ...+.++
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGK 290 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCC
Confidence 222111 123578899999888888776 5443 4444443
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=87.14 E-value=14 Score=29.58 Aligned_cols=84 Identities=13% Similarity=0.194 Sum_probs=50.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC--------------------CeE
Q 024185 101 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN--------------------NNI 160 (271)
Q Consensus 101 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------------~~i 160 (271)
+|++.++=+..|.+..+|.++++.. ....+ .+....++|. |.+++++-.. --+
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e--~Va~v---pG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv 284 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQ--PVAFL---PGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGV 284 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEE--EEEEC---CCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccE
Confidence 5776677777899999998877741 22333 3566778888 7777665421 125
Q ss_pred EEEECCCCeEEEEeecCCCCCceeeEEECCC
Q 024185 161 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 191 (271)
Q Consensus 161 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 191 (271)
.+.|+++|..+..+.....-..+..++.-|.
T Consensus 285 ~vidl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 285 AVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred EEEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence 5566666666655544433223444554444
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=87.01 E-value=23 Score=32.07 Aligned_cols=200 Identities=11% Similarity=0.011 Sum_probs=93.9
Q ss_pred EeeEEecCCchhhhhhhhhh-ccCceEEEEEecCc--ceeEEEecCC--cce-EEEcCCCCEEEEEec---CCeEEEEeC
Q 024185 49 RGLFLSACLQLMIALCLVLL-TTALEYGIFVLMLA--SFQGILRLRG--RPT-VAFDQQGLVFAVAME---AGAIKLFDS 119 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~-~~dg~i~iwd~~~~--~~~~~~~~~~--~~~-~~~~~~~~~l~~~~~---d~~i~i~d~ 119 (271)
..+.|+++++.+++...--. .....++.+++.++ +....+.... ... ...+.++++++..+. ++.+.+++.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 45899999886433111000 12246777888877 3344444322 222 233448887665533 357888885
Q ss_pred CCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec---CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEE
Q 024185 120 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 196 (271)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 196 (271)
......+..... ...+....+. +..+.+++.... ...|...++.+......+..+.....+..+.+. .+.+++
T Consensus 255 ~~~~~~~~~~~~--~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~ 330 (686)
T PRK10115 255 ELADAEPFVFLP--RRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVV 330 (686)
T ss_pred cCCCCCceEEEE--CCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEE
Confidence 432211111211 1112222222 333333333322 223444455421112233333222347777776 334555
Q ss_pred EecCCCcEE--EEEcCCceeEEEec-CCcceeEEEEEe--cCC-cEEEEeC-----CeEEEEcCCCCC
Q 024185 197 SGSGDGTLH--AWNINTRNEVACWN-GNIGVVACLKWA--PRR-AMFVAAS-----SVLSFWIPNPSS 253 (271)
Q Consensus 197 ~~~~dg~i~--iwd~~~~~~~~~~~-~~~~~v~~~~~s--~~~-~~l~~~~-----~~v~iw~~~~~~ 253 (271)
+...+|.-+ +++...+ .+..+. .....+..+.++ +++ .++++.+ +.+..+|+.+++
T Consensus 331 ~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 331 EERQRGLTSLRQINRKTR-EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEeCCEEEEEEEcCCCC-ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 556666544 4454333 334433 222233344455 343 3444443 779999988765
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=86.89 E-value=15 Score=29.82 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=34.6
Q ss_pred CCcEEEEEecC-----CeEEEEECCCCeEEEE--eecC--CCCCceeeEEECCCCCEEEEecCC-----------CcEEE
Q 024185 147 DGKSMLLTTTN-----NNIYVLDAYGGEKRCG--FSLE--PSPNTNTEATFTPDGQYVVSGSGD-----------GTLHA 206 (271)
Q Consensus 147 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~i 206 (271)
+++.++.|+.+ ..+.+||..+.+-... +... ..+..-.+++ .-++++.+.|+.+ ..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEE
Confidence 45666777653 3578899877653321 1100 1111111122 2356666777653 24778
Q ss_pred EEcCCcee
Q 024185 207 WNINTRNE 214 (271)
Q Consensus 207 wd~~~~~~ 214 (271)
||..+.+-
T Consensus 164 yd~~~~~W 171 (341)
T PLN02153 164 YNIADGKW 171 (341)
T ss_pred EECCCCeE
Confidence 88876543
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=86.28 E-value=9.3 Score=35.09 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=50.5
Q ss_pred EEEEe-cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEE-EecCC-----eEEEEECCCC-eEEEEeec
Q 024185 105 FAVAM-EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL-TTTNN-----NIYVLDAYGG-EKRCGFSL 176 (271)
Q Consensus 105 l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~-----~i~~~d~~~~-~~~~~~~~ 176 (271)
||... ..+.+.+-|...... ...-..+..++.+.+|||||+.|+. .+.++ .|++-|+++. ..+-++..
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~----~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v 396 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGAS----RAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV 396 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCc----eEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec
Confidence 44444 335888888876553 2120235788999999999999998 44443 4888888653 22333433
Q ss_pred CCCCCceeeEEECCCCCE
Q 024185 177 EPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 177 ~~~~~~v~~~~~~~~~~~ 194 (271)
.. ..|..-...++|..
T Consensus 397 e~--aaiprwrv~e~gdt 412 (912)
T TIGR02171 397 EN--AAIPRWRVLENGDT 412 (912)
T ss_pred cc--ccccceEecCCCCe
Confidence 32 23544455565553
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=85.98 E-value=17 Score=29.53 Aligned_cols=139 Identities=6% Similarity=-0.044 Sum_probs=63.9
Q ss_pred eEEEEEecCcceeEEEec---CCc---ceEEEcCCCCEEEEEecC-----CeEEEEeCCCCCCCcceEEEecC---Cccc
Q 024185 73 EYGIFVLMLASFQGILRL---RGR---PTVAFDQQGLVFAVAMEA-----GAIKLFDSRSYDKGPFDTFLVGG---DTAE 138 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~---~~~---~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~---~~~~ 138 (271)
.+.+||..+.+-...-.. ... ......-+++.++.|+.+ ..+..||..+.+... ...+.. ....
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~--~~~~~~~~~p~~R 128 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTF--LTKLDEEGGPEAR 128 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEE--eccCCCCCCCCCc
Confidence 577888877653321111 111 111122245666666643 357889988765311 111100 0111
Q ss_pred eEEEEEcCCCcEEEEEecC-----------CeEEEEECCCCeEEEEeecCC---CCCceeeEEECCCCCEEEEecCC---
Q 024185 139 VCDIKFSNDGKSMLLTTTN-----------NNIYVLDAYGGEKRCGFSLEP---SPNTNTEATFTPDGQYVVSGSGD--- 201 (271)
Q Consensus 139 v~~~~~s~~~~~l~~~~~d-----------~~i~~~d~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d--- 201 (271)
....+..-+++.++.|+.+ ..+.+||..+.+-.. +.... ....-.+++. -+++.++.++.+
T Consensus 129 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~ 206 (341)
T PLN02153 129 TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSI 206 (341)
T ss_pred eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEecccccc
Confidence 1111223356666777653 257788887665332 11111 1100111222 355655555421
Q ss_pred ----------CcEEEEEcCCceeE
Q 024185 202 ----------GTLHAWNINTRNEV 215 (271)
Q Consensus 202 ----------g~i~iwd~~~~~~~ 215 (271)
..+.+||+.+.+-.
T Consensus 207 ~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 207 LPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred ccCCccceecCceEEEEcCCCcEE
Confidence 46888998776543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=85.66 E-value=8.2 Score=34.61 Aligned_cols=64 Identities=17% Similarity=0.312 Sum_probs=40.8
Q ss_pred ceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 94 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
..+.-+|.+..++.+..||.|.+|+....... .... ...+-..+.|...| |++...|..+.-|.
T Consensus 18 ~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs--ki~~---~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 18 TAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS--KICE---EAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred eeeeecCCCceEEEEecCCcEEEEeecccchh--hhhh---hcCCccceeeeccc--eEEEeccchhheee
Confidence 44677899999999999999999997654420 0111 11233445566554 55555666666665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 271 | ||||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-05 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-05 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 3e-05 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 3e-05 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-05 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 3e-05 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-05 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-05 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 3e-05 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 3e-05 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-05 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-05 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 3e-05 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-05 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-05 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-05 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 4e-05 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 6e-05 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 6e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 6e-04 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 7e-04 |
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 271 | |||
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.98 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.98 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.98 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.98 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.93 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.93 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.93 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.92 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.91 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.91 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.91 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.91 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.9 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.89 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.89 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.88 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.88 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.88 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.88 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.87 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.87 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.87 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.87 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.87 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.87 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.86 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.85 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.85 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.84 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.82 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.82 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.81 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.8 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.8 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.8 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.79 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.78 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.77 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.76 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.76 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.75 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.74 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.74 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.73 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.73 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.73 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.73 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.72 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.72 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.71 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.71 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.7 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.7 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.7 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.68 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.68 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.66 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.65 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.64 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.63 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.63 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.63 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.63 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.62 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.61 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.6 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.59 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.57 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.57 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.55 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.55 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.55 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.55 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.53 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.53 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.52 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.5 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.5 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.49 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.49 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.46 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.45 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.45 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.44 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.43 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.43 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.42 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.42 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.38 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.37 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.37 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.32 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.32 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.3 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.3 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.29 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.28 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.26 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.24 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.23 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.22 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.21 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.18 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.15 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.15 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.14 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.11 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.08 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.07 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.07 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.06 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.04 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.02 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.99 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.97 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.96 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.94 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.92 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.89 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.88 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.87 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.81 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.8 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.78 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.78 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.77 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.74 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.73 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.72 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.72 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.7 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.69 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.68 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.65 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.63 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.62 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.62 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.62 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.58 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.57 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.57 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.55 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.53 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.51 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.45 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.45 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.45 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.4 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.33 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.29 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.28 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.25 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.25 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.21 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.19 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.15 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.14 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.13 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.09 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.06 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.03 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.01 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.99 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.97 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.93 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.92 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.9 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.88 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.88 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.85 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.85 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.8 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.76 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.69 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.68 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.67 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.63 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.57 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.55 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.51 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.51 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.5 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.49 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.49 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.44 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.38 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.34 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.22 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.22 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.14 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.13 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 97.08 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.06 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.01 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.0 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.98 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.9 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.88 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.87 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.82 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.72 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.51 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.5 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.33 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.22 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.04 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.85 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.09 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.09 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 94.88 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 94.79 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 93.8 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 93.79 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 93.48 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 91.75 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 91.73 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 88.1 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 87.73 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 87.61 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 84.92 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.54 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 83.45 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 83.14 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.44 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 82.16 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 81.51 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 80.93 |
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=262.07 Aligned_cols=233 Identities=16% Similarity=0.181 Sum_probs=208.6
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG 92 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 92 (271)
.++.+..++.+.+|+...+.. .....+.+|...+.++.+++++.. +++++.|++|++||+++++.+..+..+.
T Consensus 50 ~l~tgs~D~~v~vW~~~~~~~--~~~~~l~gh~~~v~~~~~~~~~~~-----l~s~s~D~~i~lWd~~~~~~~~~~~~~~ 122 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDERL--DLQWSLEGHQLGVVSVDISHTLPI-----AASSSLDAHIRLWDLENGKQIKSIDAGP 122 (321)
T ss_dssp EEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECSSSSE-----EEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred EEEEEcCCCCEEEEECCCCCe--eeeeeeccCCCCEEEEEECCCCCE-----EEEEeCCCcEEEEECCCCCEEEEEeCCC
Confidence 455667789999998765522 233458899999999999999998 8899999999999999999998887764
Q ss_pred --cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 93 --RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 93 --~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
+.+++|+|++++|++++.+|.|++||+++++. ...+..|...+.+++|+|++++|++++.|+.|++||+++++.
T Consensus 123 ~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~----~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~ 198 (321)
T 3ow8_A 123 VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK----EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL 198 (321)
T ss_dssp TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE----EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce----eEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence 55699999999999999999999999998875 666778889999999999999999999999999999999999
Q ss_pred EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEc
Q 024185 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 248 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~ 248 (271)
+..+..|..+ |.+++|+|++++|++++.|+.|++||+++++....+.+|...|.+++|+|++++|++++ +.|++||
T Consensus 199 ~~~~~~h~~~--v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd 276 (321)
T 3ow8_A 199 LHTLEGHAMP--IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276 (321)
T ss_dssp EEEECCCSSC--CCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEcccCCc--eeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 9999888766 99999999999999999999999999999999999999999999999999999999998 8899999
Q ss_pred CCCCCCCcCC
Q 024185 249 PNPSSNSTDE 258 (271)
Q Consensus 249 ~~~~~~~~~~ 258 (271)
+.++++....
T Consensus 277 ~~~~~~~~~~ 286 (321)
T 3ow8_A 277 VGTRTCVHTF 286 (321)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9988765543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=262.12 Aligned_cols=224 Identities=19% Similarity=0.188 Sum_probs=202.5
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
..++.+..++.+.+++...+ ..+..+..+...+.+++|+|+++. +++++.||.+++||+++++....+..+
T Consensus 93 ~~l~s~s~D~~i~lWd~~~~----~~~~~~~~~~~~~~~~~~spdg~~-----l~~g~~dg~v~i~~~~~~~~~~~~~~~ 163 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLENG----KQIKSIDAGPVDAWTLAFSPDSQY-----LATGTHVGKVNIFGVESGKKEYSLDTR 163 (321)
T ss_dssp SEEEEEETTSEEEEEETTTT----EEEEEEECCTTCCCCEEECTTSSE-----EEEECTTSEEEEEETTTCSEEEEEECS
T ss_pred CEEEEEeCCCcEEEEECCCC----CEEEEEeCCCccEEEEEECCCCCE-----EEEEcCCCcEEEEEcCCCceeEEecCC
Confidence 34455566899999998777 445557788888999999999998 889999999999999999988888776
Q ss_pred C--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe
Q 024185 92 G--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE 169 (271)
Q Consensus 92 ~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 169 (271)
. +.+++|+|++++|++++.||.|++||+++++. ...+.+|..+|.+++|+|++++|++++.|+.|++||+++++
T Consensus 164 ~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL----LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE----EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence 4 56699999999999999999999999998775 66788999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEE
Q 024185 170 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFW 247 (271)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw 247 (271)
....+..|... |.+++|+|++++|++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++++ +.|++|
T Consensus 240 ~~~~~~~h~~~--v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 240 LAGTLSGHASW--VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp EEEEECCCSSC--EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eeEEEcCCCCc--eEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 99888888766 99999999999999999999999999999999999999999999999999999999998 889999
Q ss_pred cCC
Q 024185 248 IPN 250 (271)
Q Consensus 248 ~~~ 250 (271)
|..
T Consensus 318 d~p 320 (321)
T 3ow8_A 318 DCP 320 (321)
T ss_dssp ECC
T ss_pred eCC
Confidence 964
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=258.80 Aligned_cols=238 Identities=13% Similarity=0.126 Sum_probs=207.2
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++.+..++.+.+|+...+ ..++.+..|...+.++.|+|+++. +++|+.|++|++||+++++.+..+
T Consensus 23 p~~~~l~s~~~dg~v~lWd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~-----l~s~s~d~~i~vwd~~~~~~~~~~ 93 (304)
T 2ynn_A 23 PTEPWVLTTLYSGRVELWNYETQ----VEVRSIQVTETPVRAGKFIARKNW-----IIVGSDDFRIRVFNYNTGEKVVDF 93 (304)
T ss_dssp SSSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEEGGGTE-----EEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEcCCCcEEEEECCCC----ceeEEeeccCCcEEEEEEeCCCCE-----EEEECCCCEEEEEECCCCcEEEEE
Confidence 55566777788999999998776 455668889999999999999998 899999999999999999999999
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEEC
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~ 165 (271)
.+|. +.+++|+|++++|++|+.|++|++||++++.. ....+.+|...|.+++|+| ++..|++++.|++|++||+
T Consensus 94 ~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~ 170 (304)
T 2ynn_A 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA---LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170 (304)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE---EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEET
T ss_pred eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc---hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 8885 66799999999999999999999999987642 2456789999999999999 6789999999999999999
Q ss_pred CCCeEEEEeecCCCCCceeeEEECC--CCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATFTP--DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-- 241 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 241 (271)
++++....+..+.. ..+..+.|+| +++++++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++++
T Consensus 171 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~D 249 (304)
T 2ynn_A 171 GQSTPNFTLTTGQE-RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249 (304)
T ss_dssp TCSSCSEEEECCCT-TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETT
T ss_pred CCCCccceeccCCc-CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCC
Confidence 88776665543321 3478888876 788999999999999999999999999999999999999999999999998
Q ss_pred CeEEEEcCCCCCCCcCCC
Q 024185 242 SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 242 ~~v~iw~~~~~~~~~~~~ 259 (271)
+.|++||+.++++.....
T Consensus 250 g~i~iWd~~~~~~~~~~~ 267 (304)
T 2ynn_A 250 GTLKIWNSSTYKVEKTLN 267 (304)
T ss_dssp SCEEEEETTTCCEEEEEC
T ss_pred CeEEEEECCCCceeeecc
Confidence 889999999987665543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-40 Score=264.58 Aligned_cols=234 Identities=12% Similarity=0.073 Sum_probs=194.5
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
...++.+..++.+.+|+...+...........+|.+.|.+++|+|++++ |++|+.|++|++||+++++.+..+.+
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~-----l~sgs~d~~i~iwd~~~~~~~~~~~~ 167 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQ-----AVSGSKDICIKVWDLAQQVVLSSYRA 167 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCE-----EEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 3567788889999999988774443434456689999999999999998 89999999999999999999999988
Q ss_pred CC--cceEEEcCCCC-EEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEECC
Q 024185 91 RG--RPTVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 91 ~~--~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~ 166 (271)
|. +.+++|+|++. +|++++.|+.|++||+++++. ........|...+.+++|+|+ +++|++|+.|+.|++||++
T Consensus 168 h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 168 HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC--EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred cCCceEEEEecCCCCCceeeeccccccccccccccce--eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 85 56799999884 789999999999999998875 233333455667999999994 6678899999999999999
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCC-CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCc-EEEEeC--C
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS--S 242 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~ 242 (271)
+++++..+..|... |.+++|+|++ ++|++|+.|++|++||+++++.. .+.+|.+.|++++|+|+++ +|++++ +
T Consensus 246 ~~~~~~~~~~h~~~--v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 246 STSCVLSSAVHSQC--VTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp C--CCEEEECCSSC--EEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CCcEEEEEcCCCCC--EEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence 99999999988876 9999999998 57999999999999999988765 5688999999999999986 566776 8
Q ss_pred eEEEEcCCCCCC
Q 024185 243 VLSFWIPNPSSN 254 (271)
Q Consensus 243 ~v~iw~~~~~~~ 254 (271)
+|++|++.+...
T Consensus 323 ~v~~w~v~~~~~ 334 (344)
T 4gqb_B 323 QVVHHVVPTEPL 334 (344)
T ss_dssp CEEEEECCC---
T ss_pred eEEEEECCCCCC
Confidence 899999987544
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=260.12 Aligned_cols=230 Identities=13% Similarity=0.150 Sum_probs=202.6
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|....++.+..++.+..++...+.........+.+|.+.+.++.|++++. +++++.|++|++||+++++.+..+
T Consensus 107 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~------l~s~s~d~~i~~wd~~~~~~~~~~ 180 (340)
T 1got_B 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ------IVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp TTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE------EEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc------EEEEECCCcEEEEECCCCcEEEEE
Confidence 44455666777888888887655433345566889999999999999886 568899999999999999999999
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
.+|. +.+++|+|+++++++|+.|+.|++||+++++. ...+.+|...|.+++|+|++++|++++.|++|++||++
T Consensus 181 ~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~----~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~ 256 (340)
T 1got_B 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC----RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCee----EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 8875 56799999999999999999999999998775 66788999999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
+++.+..+..+.....+.+++|+|+|+++++|+.||.|++||+.+++.+..+.+|...|.+++|+|+|++|++++ +.|
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred CCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence 998887776444334599999999999999999999999999999999999999999999999999999999998 889
Q ss_pred EEEc
Q 024185 245 SFWI 248 (271)
Q Consensus 245 ~iw~ 248 (271)
++||
T Consensus 337 ~iWd 340 (340)
T 1got_B 337 KIWN 340 (340)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9997
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-40 Score=270.16 Aligned_cols=236 Identities=12% Similarity=0.151 Sum_probs=212.1
Q ss_pred eecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
.|..+.++.+..++.+.+|+...+ ...+.+.+|.+.|.+++|+|+++. +++|+.|++|++||+++++.+..
T Consensus 117 ~p~~~~l~s~s~Dg~i~vwd~~~~----~~~~~l~~h~~~V~~v~~~~~~~~-----l~sgs~D~~i~iwd~~~~~~~~~ 187 (410)
T 1vyh_C 117 HPVFSVMVSASEDATIKVWDYETG----DFERTLKGHTDSVQDISFDHSGKL-----LASCSADMTIKLWDFQGFECIRT 187 (410)
T ss_dssp CSSSSEEEEEESSSCEEEEETTTC----CCCEEECCCSSCEEEEEECTTSSE-----EEEEETTSCCCEEETTSSCEEEC
T ss_pred cCCCCEEEEEeCCCeEEEEECCCC----cEEEEEeccCCcEEEEEEcCCCCE-----EEEEeCCCeEEEEeCCCCceeEE
Confidence 344556667778999999998777 334558899999999999999998 89999999999999999999998
Q ss_pred EecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEEC
Q 024185 88 LRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 88 ~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 165 (271)
+.+|. +.+++|+|++++|++++.|+.|++||+++++. ...+.+|...|.++.|+|+++++++++.|+.|++||+
T Consensus 188 ~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC----VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263 (410)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE----EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 88775 67799999999999999999999999998875 6667899999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCCceeeEEECCC--------------------CCEEEEecCCCcEEEEEcCCceeEEEecCCccee
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATFTPD--------------------GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVV 225 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 225 (271)
++++....+..|... +.+++|+|+ +.++++|+.|+.|++||+++++++..+.+|...|
T Consensus 264 ~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v 341 (410)
T 1vyh_C 264 ATKECKAELREHRHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 341 (410)
T ss_dssp TTCCEEEEECCCSSC--EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred CCCceeeEecCCCce--EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcE
Confidence 999998888887766 999999996 6789999999999999999999999999999999
Q ss_pred EEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCC
Q 024185 226 ACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 226 ~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~ 258 (271)
.+++|+|++++|++++ +.|++||+.+++.....
T Consensus 342 ~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~ 376 (410)
T 1vyh_C 342 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376 (410)
T ss_dssp EEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence 9999999999999998 88999999888766544
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=265.79 Aligned_cols=227 Identities=12% Similarity=0.118 Sum_probs=204.6
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|....++.+..++.+..|+...+ ..++.+.+|...+.++.|+|+++. +++++.|++|++||++++.++..+
T Consensus 160 ~~~~~l~sgs~D~~i~iwd~~~~----~~~~~~~~h~~~V~~v~~~p~~~~-----l~s~s~D~~i~~wd~~~~~~~~~~ 230 (410)
T 1vyh_C 160 HSGKLLASCSADMTIKLWDFQGF----ECIRTMHGHDHNVSSVSIMPNGDH-----IVSASRDKTIKMWEVQTGYCVKTF 230 (410)
T ss_dssp TTSSEEEEEETTSCCCEEETTSS----CEEECCCCCSSCEEEEEECSSSSE-----EEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCC----ceeEEEcCCCCCEEEEEEeCCCCE-----EEEEeCCCeEEEEECCCCcEEEEE
Confidence 44455666677899999987655 455668899999999999999998 889999999999999999999999
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC-------------------
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND------------------- 147 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------- 147 (271)
.+|. +.+++++|++++|++++.|+.|++||+.+++. ...+.+|...|.+++|+|+
T Consensus 231 ~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (410)
T 1vyh_C 231 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC----KAELREHRHVVECISWAPESSYSSISEATGSETKKSGK 306 (410)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC------
T ss_pred eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCce----eeEecCCCceEEEEEEcCcccccchhhhccccccccCC
Confidence 8885 56699999999999999999999999998775 6677899999999999996
Q ss_pred -CcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeE
Q 024185 148 -GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVA 226 (271)
Q Consensus 148 -~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 226 (271)
+.+|++|+.|+.|++||+++++++..+.+|... |.+++|+|++++|++|+.||.|++||+++++++..+.+|...|+
T Consensus 307 ~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~--v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~ 384 (410)
T 1vyh_C 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW--VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT 384 (410)
T ss_dssp -CCEEEEEETTSEEEEEETTTTEEEEEEECCSSC--EEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEECCCCc--EEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEE
Confidence 678999999999999999999999999888765 99999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 227 CLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 227 ~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
+++|+|++.+|++|+ +.|++|+++
T Consensus 385 ~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 385 SLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999998 889999863
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-38 Score=251.77 Aligned_cols=199 Identities=14% Similarity=0.191 Sum_probs=179.9
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcC--CCCEEEEEecCCeEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQ--QGLVFAVAMEAGAIKL 116 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~--~~~~l~~~~~d~~i~i 116 (271)
+..|.+.+.++.|+|++.. +++++.|++|++||+++++.+..+.+|. +.+++|+| ++++|++|+.||.|++
T Consensus 150 ~~~h~~~v~~~~~~~~~~~-----l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~ 224 (354)
T 2pbi_B 150 VAMHTNYLSACSFTNSDMQ-----ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV 224 (354)
T ss_dssp EEECSSCEEEEEECSSSSE-----EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEE
T ss_pred eeccCCcEEEEEEeCCCCE-----EEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEE
Confidence 4467888899999999987 8899999999999999999999998885 55688877 5689999999999999
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEE
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 196 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 196 (271)
||+++++. ...+.+|...|.+++|+|++++|++++.|++|++||+++++.+..+..+.....+.+++|+|++++++
T Consensus 225 wd~~~~~~----~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 300 (354)
T 2pbi_B 225 WDMRSGQC----VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLF 300 (354)
T ss_dssp EETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred EECCCCcE----EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEE
Confidence 99998875 66778999999999999999999999999999999999998877776554434588999999999999
Q ss_pred EecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEc
Q 024185 197 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 248 (271)
Q Consensus 197 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~ 248 (271)
+|+.|+.|++||+.+++.+..+.+|...|++++|+|+|++|++++ +.|++|+
T Consensus 301 ~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 301 AGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999999999999999999999998 8899996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=255.78 Aligned_cols=204 Identities=14% Similarity=0.066 Sum_probs=173.8
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE----ecC--CcceEEEcCCCCEEEEEecCCeEEEE
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL----RLR--GRPTVAFDQQGLVFAVAMEAGAIKLF 117 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~ 117 (271)
+...|.+++|+|++. +++++.||+|++||+++++....+ .+| .+.+++|+|++++|++|+.|++|++|
T Consensus 81 ~~~~v~~~~~s~d~~------l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iw 154 (344)
T 4gqb_B 81 TEAGVADLTWVGERG------ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW 154 (344)
T ss_dssp ESSCEEEEEEETTTE------EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cCCCEEEEEEeCCCe------EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 456799999999975 668999999999999998765443 355 36779999999999999999999999
Q ss_pred eCCCCCCCcceEEEecCCccceEEEEEcCCCc-EEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCC-CCEE
Q 024185 118 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD-GQYV 195 (271)
Q Consensus 118 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l 195 (271)
|+++++. ...+.+|...|.+++|+|++. +|++++.|++|++||+++++....+..+.....+.+++|+|+ ++++
T Consensus 155 d~~~~~~----~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 230 (344)
T 4gqb_B 155 DLAQQVV----LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVF 230 (344)
T ss_dssp ETTTTEE----EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEE
T ss_pred ECCCCcE----EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcce
Confidence 9998875 677889999999999999875 688999999999999999998888765555455889999995 5788
Q ss_pred EEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCC-cEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 196 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 196 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
++|+.||.|++||+++++++..+.+|...|++++|+|++ ++|++++ ++|++||+.++++...
T Consensus 231 ~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~ 295 (344)
T 4gqb_B 231 VFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS 295 (344)
T ss_dssp EEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE
T ss_pred EEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence 999999999999999999999999999999999999998 5788887 8899999998876543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=257.64 Aligned_cols=232 Identities=12% Similarity=0.064 Sum_probs=191.8
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
...++.+..++.+.+|+...+...........+|.+.|.+++|+|+++. |++++.|+.|++||+++++.+..+..
T Consensus 105 d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-----l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQ-----AVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp TTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSE-----EEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCE-----EEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 3567777888999998876653322222234578999999999999998 89999999999999999999999988
Q ss_pred CC--cceEEEcCCCC-EEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEECC
Q 024185 91 RG--RPTVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 91 ~~--~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~ 166 (271)
|. +.+++|+|+++ ++++++.|+.|++||+++++. ........|...+.+++|+|+ +.+|++|+.|+.|++||++
T Consensus 180 h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~ 257 (357)
T 4g56_B 180 HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP--ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257 (357)
T ss_dssp CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC--BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce--eeeeeeccccccccchhhhhcccceEEEeecccceeEEECC
Confidence 75 56799999885 789999999999999998775 334445567788999999997 5678899999999999999
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCC-CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEec-CCcEEEEeC--C
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP-RRAMFVAAS--S 242 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~--~ 242 (271)
+++.+..+..+... |.+++|+|++ ++|++|+.|++|++||+++++.+..+ +|...|++++|+| ++.+|++++ +
T Consensus 258 ~~~~~~~~~~~~~~--v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg 334 (357)
T 4g56_B 258 NPDSAQTSAVHSQN--ITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDH 334 (357)
T ss_dssp CGGGCEEECCCSSC--EEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CCcEeEEEecccee--EEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCC
Confidence 99999998888766 9999999987 57899999999999999999887765 7999999999999 799999998 8
Q ss_pred eEEEEcCCCC
Q 024185 243 VLSFWIPNPS 252 (271)
Q Consensus 243 ~v~iw~~~~~ 252 (271)
.|++|++.+.
T Consensus 335 ~v~iW~~~~~ 344 (357)
T 4g56_B 335 KVLHHHLPSE 344 (357)
T ss_dssp CEEEEECC--
T ss_pred eEEEEECCCC
Confidence 9999999663
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=248.91 Aligned_cols=211 Identities=13% Similarity=0.168 Sum_probs=191.1
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeE
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAI 114 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i 114 (271)
..+.+.+|.+.|.++.|+|++++ +++++.||+|++||..+++.+..+..|. +.+++|+|++++|++++.|+.+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~-----l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v 121 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRL-----LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSE-----EEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred hheeecCCCCceEEEEECCCCCE-----EEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeE
Confidence 44668899999999999999998 8999999999999999999988888775 5669999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCE
Q 024185 115 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 194 (271)
++||+.+.+........+.+|.+.|.++.|++++. +++++.|+.|++||+++++.+..+..|... |.+++|+|++++
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~ 198 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGD--VMSLSLAPDTRL 198 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEECTTSSE
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCc--eEEEEECCCCCE
Confidence 99999876532334556789999999999999876 889999999999999999999999888766 999999999999
Q ss_pred EEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 195 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
+++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++ +.|++||+++++..
T Consensus 199 l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~ 261 (340)
T 1got_B 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261 (340)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Confidence 99999999999999999999999999999999999999999999998 88999999886544
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=239.39 Aligned_cols=231 Identities=15% Similarity=0.143 Sum_probs=197.8
Q ss_pred eecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-eeE
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-FQG 86 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~ 86 (271)
.|..+.++.+..++.+..++...+ ..+..+.+|.+.+.+++|+|++++ +++++.|++|++||++++. ...
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~-----l~sgs~D~~v~lWd~~~~~~~~~ 134 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTG----EKVVDFEAHPDYIRSIAVHPTKPY-----VLSGSDDLTVKLWNWENNWALEQ 134 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECSSSSE-----EEEEETTSCEEEEEGGGTTEEEE
T ss_pred eCCCCEEEEECCCCEEEEEECCCC----cEEEEEeCCCCcEEEEEEcCCCCE-----EEEECCCCeEEEEECCCCcchhh
Confidence 344556777788999999998777 445568899999999999999998 8999999999999998874 456
Q ss_pred EEecCC--cceEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC--CCcEEEEEecCCeEE
Q 024185 87 ILRLRG--RPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLTTTNNNIY 161 (271)
Q Consensus 87 ~~~~~~--~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~ 161 (271)
.+.+|. +.+++|+| ++..|++|+.|+.|++||+.+... . .....+|...+..+.|+| ++++|++++.|++|+
T Consensus 135 ~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~ 211 (304)
T 2ynn_A 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--N-FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (304)
T ss_dssp EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC--S-EEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc--c-ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence 677775 67799999 678999999999999999987664 1 222345668899999987 778999999999999
Q ss_pred EEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCc--EEEE
Q 024185 162 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA--MFVA 239 (271)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~ 239 (271)
+||+++++++..+.+|... +.+++|+|++++|++|+.||.|++||+++++.+..+..|...+.+++|+|++. ++++
T Consensus 212 iWd~~~~~~~~~~~~h~~~--v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as 289 (304)
T 2ynn_A 212 IWDYQTKSCVATLEGHMSN--VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS 289 (304)
T ss_dssp EEETTTTEEEEEEECCSSC--EEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEE
T ss_pred EEeCCCCccceeeCCCCCC--EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEE
Confidence 9999999999999988876 99999999999999999999999999999999999999999999999999875 5888
Q ss_pred eC-CeEEEEcCCCC
Q 024185 240 AS-SVLSFWIPNPS 252 (271)
Q Consensus 240 ~~-~~v~iw~~~~~ 252 (271)
++ +.+.+|++...
T Consensus 290 g~~~g~~~~~~~~~ 303 (304)
T 2ynn_A 290 GFDNGFTVLSLGND 303 (304)
T ss_dssp EETTEEEEEECC--
T ss_pred ecCCceEEEEeccC
Confidence 87 77999988653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=250.99 Aligned_cols=237 Identities=15% Similarity=0.190 Sum_probs=190.3
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhh--------------------------
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIA-------------------------- 62 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~-------------------------- 62 (271)
|..+.++.+..++.+.+|+...+ .....+..|...+.+++|+|+++.++.
T Consensus 76 p~~~~l~s~s~D~~v~iWd~~~~----~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~ 151 (380)
T 3iz6_a 76 PEKNWIVSASQDGRLIVWNALTS----QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSR 151 (380)
T ss_dssp TTSSCEEEEETTSEEEEEETTTT----EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCC----ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCcccee
Confidence 44456667778999999997666 333445556666666666665543210
Q ss_pred -------------------hhhhhhccCceEEEEEecCcceeEEE-----ecCC--cceEEEcC-CCCEEEEEecCCeEE
Q 024185 63 -------------------LCLVLLTTALEYGIFVLMLASFQGIL-----RLRG--RPTVAFDQ-QGLVFAVAMEAGAIK 115 (271)
Q Consensus 63 -------------------~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~--~~~~~~~~-~~~~l~~~~~d~~i~ 115 (271)
..+++++.|++|++||+++++.+..+ .+|. +.+++|++ ++++|++|+.|+.|+
T Consensus 152 ~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~ 231 (380)
T 3iz6_a 152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231 (380)
T ss_dssp BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence 01678888888888888888877766 3343 45588876 789999999999999
Q ss_pred EEeCCCC-CCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC-----CceeeEEEC
Q 024185 116 LFDSRSY-DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-----NTNTEATFT 189 (271)
Q Consensus 116 i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----~~v~~~~~~ 189 (271)
+||++.. +. ...+.+|.+.|.+++|+|++++|++++.|++|++||+++++.+..+..+... ..+.+++|+
T Consensus 232 ~wd~~~~~~~----~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 232 LWDLRITSRA----VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS 307 (380)
T ss_dssp EEETTTTCCC----CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred EEECCCCCcc----eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC
Confidence 9999744 33 5567799999999999999999999999999999999999988877654321 247899999
Q ss_pred CCCCEEEEecCCCcEEEEEcCCceeEEEe----cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 190 PDGQYVVSGSGDGTLHAWNINTRNEVACW----NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 190 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
|+|+++++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|+|++|++|+ +.|++|++...+
T Consensus 308 ~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 308 ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999999999999999988877 68999999999999999999998 889999998754
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=241.88 Aligned_cols=230 Identities=14% Similarity=0.150 Sum_probs=200.6
Q ss_pred eeEEeeecceeeEEEEeecccee-eEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFARQNIILILLESLCGIYQ-CMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
+.++-+..++.+..|+....... ...++.+.+|...+.+++|+|++++ +++++.|++|++||+++++.+..+.+
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~-----l~s~s~D~~v~~wd~~~~~~~~~~~~ 105 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY-----ALSASWDKTLRLWDVATGETYQRFVG 105 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSE-----EEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCE-----EEEEeCCCEEEEEECCCCCeeEEEcc
Confidence 34555667899999987543221 2346678999999999999999998 89999999999999999999999988
Q ss_pred CC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC------CcEEEEEecCCeEEE
Q 024185 91 RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND------GKSMLLTTTNNNIYV 162 (271)
Q Consensus 91 ~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~d~~i~~ 162 (271)
|. +.+++|+|++++|++++.|+.|++||++... ...+.+|...+.+++|+|+ +..+++++.|+.|++
T Consensus 106 h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~ 180 (319)
T 3frx_A 106 HKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC-----LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180 (319)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE-----EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-----EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEE
Confidence 85 5669999999999999999999999997533 5667889999999999995 448999999999999
Q ss_pred EECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 163 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
||+++++....+..|... |.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..|.+++|+|++.++++++
T Consensus 181 wd~~~~~~~~~~~~h~~~--v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~ 257 (319)
T 3frx_A 181 WNLNQFQIEADFIGHNSN--INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA 257 (319)
T ss_dssp EETTTTEEEEEECCCCSC--EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEET
T ss_pred EECCcchhheeecCCCCc--EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcC
Confidence 999999998888888776 999999999999999999999999999999999998755 5799999999999999988
Q ss_pred CeEEEEcCCCCCC
Q 024185 242 SVLSFWIPNPSSN 254 (271)
Q Consensus 242 ~~v~iw~~~~~~~ 254 (271)
+.+++|+++.+..
T Consensus 258 ~~i~v~~~~~~~~ 270 (319)
T 3frx_A 258 TGIKVFSLDPQYL 270 (319)
T ss_dssp TEEEEEEETTEEE
T ss_pred CCcEEEEeCcCee
Confidence 7799999887543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-37 Score=249.63 Aligned_cols=229 Identities=17% Similarity=0.178 Sum_probs=196.2
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|....++.+..++.+.+++...+ .....+.+|...+.+++|+|+++. +++++.|++|++||+++++....+
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~p~~~~-----l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFPSGDK-----LVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSE-----EEEEETTSEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCC----cEEEEEccCCCCEEEEEEcCCCCE-----EEEecCCCcEEEEECCCCeeEEEE
Confidence 34456666778999999998776 455668899999999999999998 889999999999999999988777
Q ss_pred ecC-CcceEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcceEEEe-------cCCccceEEEEEcCCCcEEEEEecCCe
Q 024185 89 RLR-GRPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV-------GGDTAEVCDIKFSNDGKSMLLTTTNNN 159 (271)
Q Consensus 89 ~~~-~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~d~~ 159 (271)
..+ .+.+++|+| ++++|++++.|+.|++||+++++. ...+ .+|...|.+++|+|++++|++++.|+.
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~----~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL----VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE----EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcE----EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 654 467799999 899999999999999999988764 2222 578999999999999999999999999
Q ss_pred EEEEECCCC------------eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEE
Q 024185 160 IYVLDAYGG------------EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVAC 227 (271)
Q Consensus 160 i~~~d~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 227 (271)
|++||+++. .+...+.+|... |.+++|+|+++++++|+.|+.|++||+++++.+..+.+|...|.+
T Consensus 280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~ 357 (393)
T 1erj_A 280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF--VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 357 (393)
T ss_dssp EEEEEC---------------CEEEEEECCSSC--EEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EEEEECCCCCCcccccCCCCCcceEEEecccCc--EEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEE
Confidence 999999763 334456666654 999999999999999999999999999999999999999999999
Q ss_pred EEEec------CCcEEEEeC--CeEEEEcCCCC
Q 024185 228 LKWAP------RRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 228 ~~~s~------~~~~l~~~~--~~v~iw~~~~~ 252 (271)
++|+| ++++|++|+ +.|++|++...
T Consensus 358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 358 VAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 99886 688999998 88999998653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=239.37 Aligned_cols=210 Identities=16% Similarity=0.201 Sum_probs=189.6
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeE
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAI 114 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i 114 (271)
....+.+|.+.|.+++|+|++++ +++++.||.|++|+..+++....+..|. +.+++|+|++++|++++.|+.|
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~-----l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEW-----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eEEEEcccCCcEEEEEECCCCCE-----EEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence 34557899999999999999998 8899999999999999999888888775 5669999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCE
Q 024185 115 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 194 (271)
++||+++++. ...+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|..+ +.+++|+|++++
T Consensus 90 ~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~ 163 (312)
T 4ery_A 90 KIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSL 163 (312)
T ss_dssp EEEETTTCCE----EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECTTSSE
T ss_pred EEEECCCCcE----EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc--EEEEEEcCCCCE
Confidence 9999998875 6667889999999999999999999999999999999999999888877765 999999999999
Q ss_pred EEEecCCCcEEEEEcCCceeEEEe-cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 195 VVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
+++++.||.|++||+++++.+..+ ..+...+..++|+|++++|++++ +.|++||+.+++....
T Consensus 164 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 229 (312)
T 4ery_A 164 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229 (312)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE
T ss_pred EEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 999999999999999999888776 44567899999999999999987 8899999988765443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=237.84 Aligned_cols=237 Identities=14% Similarity=0.194 Sum_probs=202.4
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++.+..++.+..++...+ .....+.+|...+.+++|+|+++. +++++.|+.|++||+++++.+..+
T Consensus 33 ~~~~~l~s~~~dg~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~-----l~s~~~d~~i~vwd~~~~~~~~~~ 103 (312)
T 4ery_A 33 PNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDSNL-----LVSASDDKTLKIWDVSSGKCLKTL 103 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSE-----EEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEeeCCCeEEEEeCCCc----ccchhhccCCCceEEEEEcCCCCE-----EEEECCCCEEEEEECCCCcEEEEE
Confidence 44556777778999999988766 344558899999999999999998 889999999999999999999999
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
.+|. +.+++|+|++++|++++.|+.|++||+++++. ...+..|..+|.+++|+|+++++++++.|+.|++||++
T Consensus 104 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~ 179 (312)
T 4ery_A 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179 (312)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE----EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 8875 56699999999999999999999999998775 66778899999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEE--EEEe-cCCcEEEEeC--
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVAC--LKWA-PRRAMFVAAS-- 241 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~--~~~s-~~~~~l~~~~-- 241 (271)
+++.+..+..... ..+..++|+|+++++++++.||.|++||+++++.+..+.+|...+.. ..++ +++.+|++++
T Consensus 180 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 258 (312)
T 4ery_A 180 SGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258 (312)
T ss_dssp TCCEEEEECCSSC-CCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTT
T ss_pred CCceeeEEeccCC-CceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCC
Confidence 9988777643322 34888999999999999999999999999999999999888764332 2344 6788999998
Q ss_pred CeEEEEcCCCCCCCcCCC
Q 024185 242 SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 242 ~~v~iw~~~~~~~~~~~~ 259 (271)
+.|++||+.+++......
T Consensus 259 g~i~vwd~~~~~~~~~~~ 276 (312)
T 4ery_A 259 NLVYIWNLQTKEIVQKLQ 276 (312)
T ss_dssp SCEEEEETTTCCEEEEEC
T ss_pred CEEEEEECCCchhhhhhh
Confidence 889999999887665443
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=241.00 Aligned_cols=209 Identities=14% Similarity=0.151 Sum_probs=183.3
Q ss_pred EEEEcccccceEEeeEEecCC-chhhhhhhhhhccCceEEEEEecC-----cceeEEEecCC--cceEEEcCCCCEEEEE
Q 024185 37 IIEFFATSKGIRRGLFLSACL-QLMIALCLVLLTTALEYGIFVLML-----ASFQGILRLRG--RPTVAFDQQGLVFAVA 108 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~-~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~--~~~~~~~~~~~~l~~~ 108 (271)
....+.+|.+.|.+++++|++ +. |++++.|++|++||+.. +.++..+.+|. +.+++|+|++++|+++
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~-----l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNL-----LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTE-----EEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEccccceEEEEEccCCCccE-----EEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence 344588999999999999976 55 78999999999999864 33566777775 5669999999999999
Q ss_pred ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEE
Q 024185 109 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 109 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~ 188 (271)
+.|++|++||+++++. ...+.+|...|.+++|+|+++++++++.|++|++||++ ++.+..+..|... +.++.|
T Consensus 84 s~D~~v~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~--v~~~~~ 156 (319)
T 3frx_A 84 SWDKTLRLWDVATGET----YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDW--VSQVRV 156 (319)
T ss_dssp ETTSEEEEEETTTTEE----EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSC--EEEEEE
T ss_pred eCCCEEEEEECCCCCe----eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCc--EEEEEE
Confidence 9999999999998875 66678999999999999999999999999999999986 4566777777665 999999
Q ss_pred CCC------CCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 189 TPD------GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 189 ~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
+|. +..+++++.|+.|++||+++++....+.+|...|.+++|+|++++|++++ +.|++||+.+++....
T Consensus 157 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~ 233 (319)
T 3frx_A 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233 (319)
T ss_dssp CCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred ccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 985 45899999999999999999999999999999999999999999999998 8899999998765443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=243.04 Aligned_cols=211 Identities=11% Similarity=0.098 Sum_probs=188.0
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeE
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAI 114 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i 114 (271)
..+.+.+|.+.|.+++|+|+++. +++++.||+|++||..+++....+..+. +.+++|+|+++++++++.|+.+
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~-----l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i 130 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRR-----IVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKC 130 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSE-----EEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEE
T ss_pred EEEEecCCCCeEEEEEECCCCCE-----EEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCE
Confidence 44668899999999999999998 8999999999999999998888887664 6679999999999999999999
Q ss_pred EEEeCCCCCC--CcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECC--
Q 024185 115 KLFDSRSYDK--GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-- 190 (271)
Q Consensus 115 ~i~d~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~-- 190 (271)
++|++..... .......+.+|...|.+++|+|+++.|++++.|++|++||+++++.+..+..|... +.+++|+|
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~--v~~~~~~~~~ 208 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD--VLCLDLAPSE 208 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECCCS
T ss_pred EEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC--eEEEEEEeCC
Confidence 9999875421 11224456679999999999999999999999999999999999999999888776 88899987
Q ss_pred CCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 191 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 191 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
+++++++|+.||.|++||+++++++..+.+|...|.+++|+|++++|++++ +.|++||++.++.
T Consensus 209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~ 274 (354)
T 2pbi_B 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE 274 (354)
T ss_dssp SCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 578999999999999999999999999999999999999999999999998 8899999987654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=237.74 Aligned_cols=236 Identities=13% Similarity=0.156 Sum_probs=193.7
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc--eeE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS--FQG 86 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~ 86 (271)
|..+.|+.+..++.+.+++...+.... ......+|.+.|.+++|+|++++ |++++.|+++++||..++. .+.
T Consensus 26 p~g~~las~~~D~~i~iw~~~~~~~~~-~~~~~~~h~~~v~~~~~sp~g~~-----l~s~s~D~~v~iw~~~~~~~~~~~ 99 (345)
T 3fm0_A 26 PAGTLLASCGGDRRIRIWGTEGDSWIC-KSVLSEGHQRTVRKVAWSPCGNY-----LASASFDATTCIWKKNQDDFECVT 99 (345)
T ss_dssp TTSSCEEEEETTSCEEEEEEETTEEEE-EEEECSSCSSCEEEEEECTTSSE-----EEEEETTSCEEEEEECCC-EEEEE
T ss_pred CCCCEEEEEcCCCeEEEEEcCCCccee-eeeeccccCCcEEEEEECCCCCE-----EEEEECCCcEEEEEccCCCeEEEE
Confidence 444566667779999999887663221 12335789999999999999998 8999999999999998764 566
Q ss_pred EEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 87 ILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 87 ~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
.+.+|. +.+++|+|++++|++++.|+.|++||+.+... ......+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 100 ~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~ 178 (345)
T 3fm0_A 100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE-YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178 (345)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC-EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEE
T ss_pred EccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC-eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 777774 66799999999999999999999999987653 122445778999999999999999999999999999999
Q ss_pred CCCCeE--EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC---------------ceeEEEecC-CcceeE
Q 024185 165 AYGGEK--RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT---------------RNEVACWNG-NIGVVA 226 (271)
Q Consensus 165 ~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------------~~~~~~~~~-~~~~v~ 226 (271)
.++++. ...+..|... |.+++|+|+|++|++++.|++|++||... .+++..+.+ |...|.
T Consensus 179 ~~~~~~~~~~~~~~h~~~--v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 256 (345)
T 3fm0_A 179 EEEDDWVCCATLEGHEST--VWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIY 256 (345)
T ss_dssp EETTEEEEEEEECCCSSC--EEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEE
T ss_pred ecCCCEEEEEEecCCCCc--eEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEE
Confidence 988764 4566666655 99999999999999999999999999632 133445555 888999
Q ss_pred EEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 227 CLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 227 ~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
+++|+|++..|++++ +.|++|+.+...
T Consensus 257 ~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 257 DIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp EEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred EEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 999999999999987 789999987654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=237.52 Aligned_cols=234 Identities=13% Similarity=0.108 Sum_probs=191.4
Q ss_pred eeEEeeecceeeEEEEeeccce---eeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 12 QALLFARQNIILILLESLCGIY---QCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
+.++.+..++.+.+|+...+.. .......+.+|...|.+++|+|++.+ +++++.|++|++||+++++.+..+
T Consensus 40 ~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~-----l~s~s~D~~v~lwd~~~~~~~~~~ 114 (343)
T 2xzm_R 40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF-----AISSSWDKTLRLWDLRTGTTYKRF 114 (343)
T ss_dssp CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE-----EEEEETTSEEEEEETTSSCEEEEE
T ss_pred CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE-----EEEEcCCCcEEEEECCCCcEEEEE
Confidence 3455566789999998764321 12345668899999999999999998 889999999999999999999999
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC----------cEEEEEec
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG----------KSMLLTTT 156 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~~~~~ 156 (271)
.+|. +.+++|+|++++|++++.|+.|++||+..... .......+|...|.+++|+|++ .++++++.
T Consensus 115 ~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~ 192 (343)
T 2xzm_R 115 VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK--FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW 192 (343)
T ss_dssp ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE--EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET
T ss_pred cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce--eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcC
Confidence 8875 66799999999999999999999999974321 1111123688899999999987 78999999
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEEEecCCc
Q 024185 157 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRA 235 (271)
Q Consensus 157 d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~ 235 (271)
|+.|++|| .+.+....+..|... |.+++|+|+|++|++|+.||.|++||+.+ ......+. +...|.+++|+|++.
T Consensus 193 d~~i~iwd-~~~~~~~~~~~h~~~--v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~ 268 (343)
T 2xzm_R 193 DGRLKVWN-TNFQIRYTFKAHESN--VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQ 268 (343)
T ss_dssp TSEEEEEE-TTTEEEEEEECCSSC--EEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSC
T ss_pred CCEEEEEc-CCCceeEEEcCcccc--ceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCC
Confidence 99999999 556777778777765 99999999999999999999999999954 44444443 455799999999999
Q ss_pred EEEEeC-CeEEEEcCCCCCCCc
Q 024185 236 MFVAAS-SVLSFWIPNPSSNST 256 (271)
Q Consensus 236 ~l~~~~-~~v~iw~~~~~~~~~ 256 (271)
++++++ +.+++||+.+++...
T Consensus 269 ~la~~~d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 269 WVAVGTDQGVKIFNLMTQSKAP 290 (343)
T ss_dssp EEEEEESSCEEEEESSSCCSCS
T ss_pred EEEEECCCCEEEEEeCCCCCCc
Confidence 988776 889999998876543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=237.04 Aligned_cols=230 Identities=13% Similarity=0.136 Sum_probs=183.5
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEc-cc-ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC-------cc
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFF-AT-SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML-------AS 83 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~-------~~ 83 (271)
.++.+..++.+.+++...+.. .....+ .. |.+.|.+++|+|+++. |++++.|++|++||++. .+
T Consensus 26 ~las~~~D~~i~lw~~~~~~~--~~~~~~~~~~h~~~v~~v~~sp~~~~-----las~s~D~~v~iw~~~~~~~~~~~~~ 98 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDF--TLIDVLDETAHKKAIRSVAWRPHTSL-----LAAGSFDSTVSIWAKEESADRTFEMD 98 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCC--EEEEEECTTCCCSCEEEEEECTTSSE-----EEEEETTSCEEEEEC-------CCCE
T ss_pred EEEEEcCCCEEEEEEecCCCe--EEEEEEecCCccCCEEEEEECCCCCE-----EEEEeCCCcEEEEEcccCcCccccce
Confidence 445556789999998765422 222334 34 8999999999999998 89999999999999853 34
Q ss_pred eeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEE
Q 024185 84 FQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 161 (271)
Q Consensus 84 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 161 (271)
.+..+.+|. +.+++|+|++++|++++.|+.|++||+............+.+|...|.+++|+|++++|++++.|++|+
T Consensus 99 ~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~ 178 (330)
T 2hes_X 99 LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVR 178 (330)
T ss_dssp EEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred eEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence 566677774 677999999999999999999999999543221223456789999999999999999999999999999
Q ss_pred EEECCCC--eEEEEeecCCCCCceeeEEECCC--CCEEEEecCCCcEEEEEcCCc--------eeEEEecC-CcceeEEE
Q 024185 162 VLDAYGG--EKRCGFSLEPSPNTNTEATFTPD--GQYVVSGSGDGTLHAWNINTR--------NEVACWNG-NIGVVACL 228 (271)
Q Consensus 162 ~~d~~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~-~~~~v~~~ 228 (271)
+||.+++ +++..+.+|... |.+++|+|+ +.++++++.|++|++||++++ .....+.+ |...|.++
T Consensus 179 iW~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 256 (330)
T 2hes_X 179 IWKDYDDDWECVAVLNGHEGT--VWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNV 256 (330)
T ss_dssp EEEEETTEEEEEEEECCCSSC--EEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEE
T ss_pred EEECCCCCeeEEEEccCCCCc--EEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEE
Confidence 9998876 567778777765 999999999 779999999999999999765 34555555 88999999
Q ss_pred EEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 229 KWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 229 ~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
+|++++ +|++++ +.|++||..++
T Consensus 257 ~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 257 AWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EECTTS-CEEEEETTSCEEEEEEETT
T ss_pred EEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 999776 667766 88999998765
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-36 Score=234.56 Aligned_cols=232 Identities=10% Similarity=0.126 Sum_probs=187.9
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecC--CchhhhhhhhhhccCceEEEEEecCcc--e
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSAC--LQLMIALCLVLLTTALEYGIFVLMLAS--F 84 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~--~ 84 (271)
|..+.++.+..++.+.+++...+.. ..+..+.+|.+.|.+++|+++ ++. |++++.|++|++||+++++ .
T Consensus 19 ~~g~~las~s~D~~v~iw~~~~~~~--~~~~~l~gH~~~V~~v~~s~~~~g~~-----l~s~s~D~~v~iWd~~~~~~~~ 91 (297)
T 2pm7_B 19 YYGKRMATCSSDKTIKIFEVEGETH--KLIDTLTGHEGPVWRVDWAHPKFGTI-----LASCSYDGKVMIWKEENGRWSQ 91 (297)
T ss_dssp TTSSEEEEEETTSCEEEEEBCSSCB--CCCEEECCCSSCEEEEEECCGGGCSE-----EEEEETTTEEEEEEBSSSCBCC
T ss_pred CCCCEEEEEeCCCEEEEEecCCCCc--EEEEEEccccCCeEEEEecCCCcCCE-----EEEEcCCCEEEEEEcCCCceEE
Confidence 4445666777799999998754321 233558899999999999864 677 8899999999999998874 4
Q ss_pred eEEEecC--CcceEEEcCC--CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC-------------
Q 024185 85 QGILRLR--GRPTVAFDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND------------- 147 (271)
Q Consensus 85 ~~~~~~~--~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------- 147 (271)
+..+..| .+.+++|+|+ +++|++++.|+.|++||+++... .....+.+|...|.+++|+|+
T Consensus 92 ~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~ 169 (297)
T 2pm7_B 92 IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT--TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 169 (297)
T ss_dssp CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC--BCCEEEECCSSCEEEEEECCCC------------
T ss_pred EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc--eeeeeeecccCccceEeecCCcccccccCCCCCC
Confidence 5556655 4677999997 88999999999999999987643 123456789999999999997
Q ss_pred CcEEEEEecCCeEEEEECCCCe----EEEEeecCCCCCceeeEEECCCC---CEEEEecCCCcEEEEEcCCce---eEEE
Q 024185 148 GKSMLLTTTNNNIYVLDAYGGE----KRCGFSLEPSPNTNTEATFTPDG---QYVVSGSGDGTLHAWNINTRN---EVAC 217 (271)
Q Consensus 148 ~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~---~~~~ 217 (271)
+++|++++.|++|++||+++++ ....+.+|... |.+++|+|++ ++|++++.|++|++||+++.. ....
T Consensus 170 ~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~--V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~ 247 (297)
T 2pm7_B 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW--VRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTL 247 (297)
T ss_dssp CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC--EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE
T ss_pred cceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCc--eEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceee
Confidence 5789999999999999998765 55667777765 9999999995 899999999999999998743 1223
Q ss_pred e--cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 218 W--NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 218 ~--~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
+ ..|...|.+++|+|++++|++++ +.|++|+...
T Consensus 248 ~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 248 LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred eecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 3 46788999999999999999987 8899999763
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-36 Score=241.52 Aligned_cols=202 Identities=9% Similarity=0.050 Sum_probs=167.6
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCC
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSY 122 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 122 (271)
++..+.+++|||||++++ +++++.|++|++||+++++.+..+..+ .+..++|+|||+++++++.+ .+.+|+..++
T Consensus 132 ~~~~~~~v~fSpDg~~la---~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~ 207 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAA---IASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTG 207 (365)
T ss_dssp TTCCEEEEEECTTSSCEE---EEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTC
T ss_pred cccCEEEEEEcCCCCEEE---EEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccC
Confidence 345688899999999831 246778999999999999988888644 47889999999999999854 5667776666
Q ss_pred CCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC----eEEEEECCCCeE----EEEeecCCCCCceeeEEECCCCCE
Q 024185 123 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN----NIYVLDAYGGEK----RCGFSLEPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 123 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----~i~~~d~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~ 194 (271)
+. .......+|...|.+++|+|+++++++++.|+ .+++||+..... ...+..+... |.+++|+|||++
T Consensus 208 ~~--~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--V~~~~~Spdg~~ 283 (365)
T 4h5i_A 208 SC--IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKG--ITSMDVDMKGEL 283 (365)
T ss_dssp CE--EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSC--EEEEEECTTSCE
T ss_pred cc--eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCC--eEeEEECCCCCc
Confidence 53 23344567889999999999999999999887 688999877653 2334555544 999999999999
Q ss_pred EEEecCCCcEEEEEcCCceeEEEe-cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 195 VVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
|++|+.|++|+|||+++++++..+ .+|...|++++|+|||++|+++| ++|+|||+....
T Consensus 284 lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 284 AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 999999999999999999999885 78999999999999999999998 899999996543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=248.25 Aligned_cols=229 Identities=10% Similarity=0.031 Sum_probs=181.1
Q ss_pred ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE----EecC--Cc
Q 024185 20 NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI----LRLR--GR 93 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~--~~ 93 (271)
++.+..++...+...........+|...|.+++|+|++.+ ++++.||+|++||+.+++.... ..+| .+
T Consensus 69 d~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~------l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V 142 (357)
T 4g56_B 69 GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI------LVASDSGAVELWEILEKESLLVNKFAKYEHDDIV 142 (357)
T ss_dssp CEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE------EEEETTSCEEEC--------CCCCEEECCCSSCE
T ss_pred cCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE------EEEECCCEEEEeeccccceeEEEeeccCCCCCCE
Confidence 4667776655543222222224467788999999999874 4678899999999988765432 2344 46
Q ss_pred ceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc-EEEEEecCCeEEEEECCCCeEEE
Q 024185 94 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRC 172 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~ 172 (271)
.+++|+|++++|++++.|+.|++||+++++. ...+.+|...|.+++|+|++. ++++++.|+.|++||+++++...
T Consensus 143 ~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~----~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~ 218 (357)
T 4g56_B 143 KTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV----LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT 218 (357)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCcE----EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee
Confidence 7799999999999999999999999998775 677889999999999999875 78899999999999999998877
Q ss_pred EeecCCCCCceeeEEECCC-CCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCC-cEEEEeC--CeEEEEc
Q 024185 173 GFSLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWI 248 (271)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~~v~iw~ 248 (271)
.+........+.+++|+|+ ++++++|+.|+.|++||+++++.+..+.+|...|++++|+|++ ++|++++ ++|+|||
T Consensus 219 ~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 219 RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 7665555566999999998 5688999999999999999999999999999999999999987 5788887 8899999
Q ss_pred CCCCCCCcCC
Q 024185 249 PNPSSNSTDE 258 (271)
Q Consensus 249 ~~~~~~~~~~ 258 (271)
++++++....
T Consensus 299 ~~~~~~~~~~ 308 (357)
T 4g56_B 299 ADFSEVFRDL 308 (357)
T ss_dssp TTSCEEEEEC
T ss_pred CCCCcEeEEC
Confidence 9988765543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=238.75 Aligned_cols=238 Identities=12% Similarity=0.192 Sum_probs=188.1
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc---ee
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS---FQ 85 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~ 85 (271)
|..+.++.+..++.+.+++...+.. .....+.+|.+.|.+++|+|++++ |++++.|++|++||++++. .+
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~~~--~~~~~~~~h~~~v~~v~~sp~~~~-----l~s~s~D~~v~iwd~~~~~~~~~~ 143 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQDDF--ECVTTLEGHENEVKSVAWAPSGNL-----LATCSRDKSVWVWEVDEEDEYECV 143 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC-E--EEEEEECCCSSCEEEEEECTTSSE-----EEEEETTSCEEEEEECTTSCEEEE
T ss_pred CCCCEEEEEECCCcEEEEEccCCCe--EEEEEccCCCCCceEEEEeCCCCE-----EEEEECCCeEEEEECCCCCCeEEE
Confidence 4445566667788998888765422 334668899999999999999998 8999999999999998764 34
Q ss_pred EEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEE
Q 024185 86 GILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 163 (271)
Q Consensus 86 ~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~ 163 (271)
..+..|. +.+++|+|++++|++++.|+.|++||.++++. .....+.+|...|.+++|+|++++|++++.|++|++|
T Consensus 144 ~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~--~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW 221 (345)
T 3fm0_A 144 SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW--VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221 (345)
T ss_dssp EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE--EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEe
Confidence 5566664 66799999999999999999999999987653 2356688999999999999999999999999999999
Q ss_pred ECCCC---------------eEEEEeec-CCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCce---------eEEEe
Q 024185 164 DAYGG---------------EKRCGFSL-EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN---------EVACW 218 (271)
Q Consensus 164 d~~~~---------------~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~ 218 (271)
|.... +++..+.. |. ..|.+++|+|++..+++++.|+.|++|+...+. .....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 299 (345)
T 3fm0_A 222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHS--RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH 299 (345)
T ss_dssp EEECTTCTTCCCCC---CEEEEEEEECSSCS--SCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET
T ss_pred ccccCCCCccceeeccCCccceeEEecCCCC--CcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec
Confidence 96321 22333333 33 349999999999999999999999999987542 12234
Q ss_pred cCCcceeEEEEEecCC-cEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 219 NGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 219 ~~~~~~v~~~~~s~~~-~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
.+|...|++++|+|++ .+|++++ |.|++|++.+++....
T Consensus 300 ~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 300 QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp TSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred ccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 6899999999999997 4899987 8899999988775543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=252.98 Aligned_cols=220 Identities=19% Similarity=0.280 Sum_probs=192.5
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++.+..++.+..++. .+ ..+..+..|...+.+++|+|++++ +++++.|+.|++||. +++.+..+
T Consensus 354 ~~g~~l~~~~~dg~v~~~~~-~~----~~~~~~~~~~~~v~~~~~s~dg~~-----l~~~~~d~~v~~~~~-~~~~~~~~ 422 (577)
T 2ymu_A 354 PDGQTIASASDDKTVKLWNR-NG----QLLQTLTGHSSSVRGVAFSPDGQT-----IASASDDKTVKLWNR-NGQLLQTL 422 (577)
T ss_dssp TTSSEEEEEETTSEEEEEET-TC----CEEEEEECCSSCEEEEEECTTSSC-----EEEEETTSEEEEECT-TCCEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEcC-CC----CEEEEecCCCCCeEEEEECCCCCE-----EEEEeCCCEEEEEeC-CCCEEEEe
Confidence 44456667777888888873 33 344557889999999999999998 889999999999996 67778888
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
..|. +.+++|+|++++|++++.|+.|++||... +. ...+.+|...|.+++|+|++++|++++.|+.|++||.
T Consensus 423 ~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~----~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~- 496 (577)
T 2ymu_A 423 TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QL----LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR- 496 (577)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CE----EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-
T ss_pred cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CE----EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-
Confidence 7775 56699999999999999999999999753 32 5567789999999999999999999999999999994
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
+++.++.+..|... |++++|+||+++|++++.||.|++||. +++.+..+.+|.+.|++++|+|||++|++++ +.|
T Consensus 497 ~~~~~~~~~~h~~~--v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i 573 (577)
T 2ymu_A 497 NGQLLQTLTGHSSS--VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTV 573 (577)
T ss_dssp TSCEEEEEECCSSC--EEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred CCCEEEEEeCCCCC--EEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 68888889888776 999999999999999999999999995 6889999999999999999999999999997 889
Q ss_pred EEEc
Q 024185 245 SFWI 248 (271)
Q Consensus 245 ~iw~ 248 (271)
++||
T Consensus 574 ~~Wd 577 (577)
T 2ymu_A 574 KLWN 577 (577)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=258.37 Aligned_cols=230 Identities=14% Similarity=0.196 Sum_probs=193.2
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc--eeE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS--FQG 86 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~ 86 (271)
|..+.++++. +..+.+++...+ .....+.+|...|.+++|+|+|++ +++|+.|++|++||+.+++ ...
T Consensus 28 pdg~~l~~~~-~~~v~l~~~~~~----~~~~~~~~h~~~v~~~~~spdg~~-----lasg~~d~~v~lWd~~~~~~~~~~ 97 (611)
T 1nr0_A 28 PAGDKIQYCN-GTSVYTVPVGSL----TDTEIYTEHSHQTTVAKTSPSGYY-----CASGDVHGNVRIWDTTQTTHILKT 97 (611)
T ss_dssp TTSSEEEEEE-TTEEEEEETTCS----SCCEEECCCSSCEEEEEECTTSSE-----EEEEETTSEEEEEESSSTTCCEEE
T ss_pred CCCCEEEeCC-CCEEEEecCCCc----ccCeEecCCCCceEEEEECCCCcE-----EEEEeCCCCEEEeECCCCcceeeE
Confidence 3344555554 557777776544 334558899999999999999999 9999999999999997554 345
Q ss_pred EEecCC--cceEEEcCCCCEEEEEecC----CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc-EEEEEecCCe
Q 024185 87 ILRLRG--RPTVAFDQQGLVFAVAMEA----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNN 159 (271)
Q Consensus 87 ~~~~~~--~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~ 159 (271)
.+..|. +.+++|+|++++|++++.+ +.|++||.. +. ...+.+|...|.+++|+|++. .|++++.|++
T Consensus 98 ~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~--~~----~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~ 171 (611)
T 1nr0_A 98 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG--TS----NGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 171 (611)
T ss_dssp EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC--CB----CBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred eecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC--CC----cceecCCCCCceEEEECCCCCeEEEEEeCCCe
Confidence 566664 6679999999999998765 478888853 32 345679999999999999987 5999999999
Q ss_pred EEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec-------CCcceeEEEEEec
Q 024185 160 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-------GNIGVVACLKWAP 232 (271)
Q Consensus 160 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~ 232 (271)
|++||.++++....+..|... |.+++|+|+|++|++++.|++|++||+.+++.+..+. +|.+.|.+++|+|
T Consensus 172 v~lwd~~~~~~~~~l~~H~~~--V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp 249 (611)
T 1nr0_A 172 VAIFEGPPFKFKSTFGEHTKF--VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249 (611)
T ss_dssp EEEEETTTBEEEEEECCCSSC--EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred EEEEECCCCeEeeeeccccCc--eEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC
Confidence 999999999998888888766 9999999999999999999999999999999988884 7999999999999
Q ss_pred CCcEEEEeC--CeEEEEcCCCCCCCc
Q 024185 233 RRAMFVAAS--SVLSFWIPNPSSNST 256 (271)
Q Consensus 233 ~~~~l~~~~--~~v~iw~~~~~~~~~ 256 (271)
++++|++++ ++|++||+++++...
T Consensus 250 dg~~l~s~s~D~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 250 DGTKIASASADKTIKIWNVATLKVEK 275 (611)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCceee
Confidence 999999998 889999999876544
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=240.57 Aligned_cols=199 Identities=18% Similarity=0.185 Sum_probs=172.7
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK 124 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 124 (271)
.+.+++|+|++++ +++++.|+.|++||+++++.+..+.+|. +.+++|+|++++|++++.|+.|++||+++++.
T Consensus 125 ~v~~v~~s~dg~~-----l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 125 YIRSVCFSPDGKF-----LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 199 (393)
T ss_dssp BEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred eEEEEEECCCCCE-----EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee
Confidence 4889999999998 8899999999999999999999998875 56799999999999999999999999998764
Q ss_pred CcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCCCeEEEEee-------cCCCCCceeeEEECCCCCEEE
Q 024185 125 GPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFS-------LEPSPNTNTEATFTPDGQYVV 196 (271)
Q Consensus 125 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~ 196 (271)
...+. +...+.+++|+| +++++++++.|+.|++||+++++.+..+. .|. ..|.+++|+|++++++
T Consensus 200 ----~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 200 ----SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK--DSVYSVVFTRDGQSVV 272 (393)
T ss_dssp ----EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS--SCEEEEEECTTSSEEE
T ss_pred ----EEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCC--CCEEEEEECCCCCEEE
Confidence 33333 557899999999 89999999999999999999998877663 344 3499999999999999
Q ss_pred EecCCCcEEEEEcCCc------------eeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 197 SGSGDGTLHAWNINTR------------NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 197 ~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
+++.|+.|++||+++. .+...+.+|...|.+++|+|++++|++++ +.|++||..+++....
T Consensus 273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~ 347 (393)
T 1erj_A 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 347 (393)
T ss_dssp EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 9999999999999753 34567788999999999999999999998 8899999998876543
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=235.90 Aligned_cols=205 Identities=16% Similarity=0.150 Sum_probs=174.1
Q ss_pred EEEEcccccceEEeeEE-----ec-CCchhhhhhhhhhccCceEEEEEecCc-------ceeEEEecCC--cceEEEcCC
Q 024185 37 IIEFFATSKGIRRGLFL-----SA-CLQLMIALCLVLLTTALEYGIFVLMLA-------SFQGILRLRG--RPTVAFDQQ 101 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~-----s~-~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~--~~~~~~~~~ 101 (271)
....+.+|.+.|.+++| ++ +++. |++|+.|++|++||+.++ .+...+.+|. +.+++|+|+
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~-----l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~ 87 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPV-----LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE 87 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCE-----EEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCE-----EEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC
Confidence 34568899999999999 66 7887 899999999999999753 3556677774 667999999
Q ss_pred CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCC
Q 024185 102 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN 181 (271)
Q Consensus 102 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 181 (271)
+.++++++.|++|++||+++++. ...+.+|...|.+++|+|++++|++++.|+.|++||+.............+..
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~----~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 163 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTT----YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSD 163 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCE----EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSS
T ss_pred CCEEEEEcCCCcEEEEECCCCcE----EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCc
Confidence 99999999999999999998875 66678999999999999999999999999999999998443332222122334
Q ss_pred ceeeEEECCCC----------CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcC
Q 024185 182 TNTEATFTPDG----------QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 182 ~v~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
.+.+++|+|++ .++++++.||.|++|| .+.+....+.+|...|.+++|+|+|++|++++ +.|++||+
T Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 59999999987 7999999999999999 45677788899999999999999999999998 88999999
Q ss_pred CC
Q 024185 250 NP 251 (271)
Q Consensus 250 ~~ 251 (271)
..
T Consensus 243 ~~ 244 (343)
T 2xzm_R 243 LN 244 (343)
T ss_dssp SC
T ss_pred CC
Confidence 44
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-36 Score=234.42 Aligned_cols=204 Identities=12% Similarity=0.206 Sum_probs=174.7
Q ss_pred EcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC--cceeEEEecCC--cceEEEcCC--CCEEEEEecCCe
Q 024185 40 FFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML--ASFQGILRLRG--RPTVAFDQQ--GLVFAVAMEAGA 113 (271)
Q Consensus 40 ~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~--~~~~~~~~~--~~~l~~~~~d~~ 113 (271)
.+.+|.+.|.+++|+|++++ |++++.|++|++||+++ .+.+.++.+|. +.+++|+|+ +++|++++.|++
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~-----las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKR-----MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSE-----EEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred eccCCcCceEEEEECCCCCE-----EEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence 47789999999999999998 89999999999999974 36778888885 566999864 899999999999
Q ss_pred EEEEeCCCCCCCcceEEEecCCccceEEEEEcCC--CcEEEEEecCCeEEEEECCCCeE--EEEeecCCCCCceeeEEEC
Q 024185 114 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEK--RCGFSLEPSPNTNTEATFT 189 (271)
Q Consensus 114 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~~ 189 (271)
|++||+++++. .....+.+|...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+..|... +.+++|+
T Consensus 79 v~iWd~~~~~~--~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~--v~~~~~~ 154 (297)
T 2pm7_B 79 VMIWKEENGRW--SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG--VNSASWA 154 (297)
T ss_dssp EEEEEBSSSCB--CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSC--EEEEEEC
T ss_pred EEEEEcCCCce--EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCc--cceEeec
Confidence 99999987653 124556789999999999997 88999999999999999987632 3445566654 9999999
Q ss_pred CC-------------CCEEEEecCCCcEEEEEcCCce----eEEEecCCcceeEEEEEecCC---cEEEEeC--CeEEEE
Q 024185 190 PD-------------GQYVVSGSGDGTLHAWNINTRN----EVACWNGNIGVVACLKWAPRR---AMFVAAS--SVLSFW 247 (271)
Q Consensus 190 ~~-------------~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l~~~~--~~v~iw 247 (271)
|+ +++|++|+.|+.|++||+++++ ....+.+|...|.+++|+|++ .+|++++ ++|++|
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 97 5799999999999999998765 567889999999999999985 7899998 889999
Q ss_pred cCCCC
Q 024185 248 IPNPS 252 (271)
Q Consensus 248 ~~~~~ 252 (271)
|+++.
T Consensus 235 d~~~~ 239 (297)
T 2pm7_B 235 TQDNE 239 (297)
T ss_dssp EESST
T ss_pred EeCCC
Confidence 99764
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=254.12 Aligned_cols=233 Identities=14% Similarity=0.185 Sum_probs=193.1
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccC----ceEEEEEecCcce
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTA----LEYGIFVLMLASF 84 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~ 84 (271)
|..+.++.+..++.+.+|+...+.. .....+.+|.+.|.+++|+|+++. +++++.+ +.|++|| +++.
T Consensus 69 pdg~~lasg~~d~~v~lWd~~~~~~--~~~~~~~~~~~~v~~v~fs~dg~~-----l~~~~~~~~~~~~v~~wd--~~~~ 139 (611)
T 1nr0_A 69 PSGYYCASGDVHGNVRIWDTTQTTH--ILKTTIPVFSGPVKDISWDSESKR-----IAAVGEGRERFGHVFLFD--TGTS 139 (611)
T ss_dssp TTSSEEEEEETTSEEEEEESSSTTC--CEEEEEECSSSCEEEEEECTTSCE-----EEEEECCSSCSEEEEETT--TCCB
T ss_pred CCCcEEEEEeCCCCEEEeECCCCcc--eeeEeecccCCceEEEEECCCCCE-----EEEEECCCCceeEEEEee--CCCC
Confidence 4455666677789999998754321 223457789999999999999998 6666654 4677776 5666
Q ss_pred eEEEecCC--cceEEEcCCCC-EEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEE
Q 024185 85 QGILRLRG--RPTVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 161 (271)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 161 (271)
...+.+|. +.+++|+|++. .|++++.|++|++||..+.+. ...+.+|...|.+++|+|+|++|++++.|++|+
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~----~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~ 215 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF----KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 215 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE----eeeeccccCceEEEEECCCCCEEEEEECCCcEE
Confidence 66777774 66799999987 699999999999999877654 567889999999999999999999999999999
Q ss_pred EEECCCCeEEEEee-------cCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEE-----------------
Q 024185 162 VLDAYGGEKRCGFS-------LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC----------------- 217 (271)
Q Consensus 162 ~~d~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------------- 217 (271)
+||+.+++....+. .|.. .|.+++|+|++++|++++.|++|++||+.+++.+..
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~--~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSG--SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 293 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC
T ss_pred EEECCCCcEeeeeccccccccccCC--CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEc
Confidence 99999999888774 4554 499999999999999999999999999988765443
Q ss_pred --------------------------ecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCc
Q 024185 218 --------------------------WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNST 256 (271)
Q Consensus 218 --------------------------~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~ 256 (271)
+.+|...|.+++|+|+|++|++++ +.|++||+.+++...
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 360 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Confidence 357888999999999999999998 889999999876543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=233.30 Aligned_cols=207 Identities=15% Similarity=0.182 Sum_probs=169.5
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc--ceeEEE-ec-C--CcceEEEcCCCCEEEEEec
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA--SFQGIL-RL-R--GRPTVAFDQQGLVFAVAME 110 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~-~~-~--~~~~~~~~~~~~~l~~~~~ 110 (271)
.++.+.+|.+.|.++.++|+ . |++++.|++|++||++++ +....+ .. | .+.+++|+|++++|++++.
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~-----las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 78 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--I-----LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--E-----EEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred cceeeccCCCceeeeccCCC--E-----EEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence 44568899999999999987 5 889999999999999875 344555 23 5 4677999999999999999
Q ss_pred CCeEEEEeCCCCCC---CcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC----CeEEEEeecCCCCCce
Q 024185 111 AGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG----GEKRCGFSLEPSPNTN 183 (271)
Q Consensus 111 d~~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~~~v 183 (271)
|+.|++||++.... .......+.+|...|.+++|+|++++|++++.|++|++||++. .+++..+..|... |
T Consensus 79 D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~--v 156 (330)
T 2hes_X 79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD--V 156 (330)
T ss_dssp TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC--E
T ss_pred CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc--e
Confidence 99999999864321 1123456789999999999999999999999999999999943 2556677777765 9
Q ss_pred eeEEECCCCCEEEEecCCCcEEEEEcCCc--eeEEEecCCcceeEEEEEecC--CcEEEEeC--CeEEEEcCCCC
Q 024185 184 TEATFTPDGQYVVSGSGDGTLHAWNINTR--NEVACWNGNIGVVACLKWAPR--RAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 184 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~--~~v~iw~~~~~ 252 (271)
.+++|+|++++|++++.|++|++||..++ +++..+.+|...|.+++|+|+ +.+|++++ +.|++||+.++
T Consensus 157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 99999999999999999999999999876 678889999999999999998 67888887 88999998764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=244.89 Aligned_cols=214 Identities=14% Similarity=0.184 Sum_probs=185.2
Q ss_pred EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCe
Q 024185 36 MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGA 113 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~ 113 (271)
...+.+.+|.+.|.+++|+|++++ |++|+.||+|++||..+++....+..|. +.+++|+|++++|++|+.|+.
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~-----l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~ 131 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNW-----IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSA 131 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSC-----EEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSC
T ss_pred EEeecccccccEEEEEEEcCCCCE-----EEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCc
Confidence 455678999999999999999998 8999999999999999999999998875 566999999999999999999
Q ss_pred EEEEeCCCCCC---CcceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEECCCCeEEEEe-----ecCCCCCcee
Q 024185 114 IKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGF-----SLEPSPNTNT 184 (271)
Q Consensus 114 i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~-----~~~~~~~~v~ 184 (271)
+++||+.+... .......+.+|.+.+.++.|+|+ +..|++++.|++|++||+++++.+..+ ..|. ..+.
T Consensus 132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~--~~v~ 209 (380)
T 3iz6_a 132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT--ADVL 209 (380)
T ss_dssp CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC--SCEE
T ss_pred EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc--cCeE
Confidence 99999875321 01123446789999999999996 457999999999999999999988776 3344 3499
Q ss_pred eEEECC-CCCEEEEecCCCcEEEEEcC-CceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCc
Q 024185 185 EATFTP-DGQYVVSGSGDGTLHAWNIN-TRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNST 256 (271)
Q Consensus 185 ~~~~~~-~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~ 256 (271)
+++|+| +++++++|+.|+.|++||++ .++.+..+.+|.+.|.+++|+|++++|++++ +.|++||+++++...
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE
Confidence 999977 88999999999999999998 5678889999999999999999999999998 889999999876543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=234.40 Aligned_cols=234 Identities=12% Similarity=0.040 Sum_probs=199.8
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++.+..++.+..++...+. ......+.+|...+.+++|+|+++. +++++.||.|++||+++++....+
T Consensus 18 ~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~-----l~~~~~dg~i~vwd~~~~~~~~~~ 90 (372)
T 1k8k_C 18 KDRTQIAICPNNHEVHIYEKSGNK--WVQVHELKEHNGQVTGVDWAPDSNR-----IVTCGTDRNAYVWTLKGRTWKPTL 90 (372)
T ss_dssp TTSSEEEEECSSSEEEEEEEETTE--EEEEEEEECCSSCEEEEEEETTTTE-----EEEEETTSCEEEEEEETTEEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCc--EEeeeeecCCCCcccEEEEeCCCCE-----EEEEcCCCeEEEEECCCCeeeeeE
Confidence 444566667789999999987762 1245667889999999999999998 889999999999999988755554
Q ss_pred --ecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 89 --RLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 89 --~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
..+ .+.+++|+|++++|++++.|+.|++||++..+..........+|...|.+++|+|++++|++++.|+.|++||
T Consensus 91 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d 170 (372)
T 1k8k_C 91 VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 170 (372)
T ss_dssp ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEE
Confidence 333 4677999999999999999999999999887631112333467889999999999999999999999999999
Q ss_pred C------------------CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeE
Q 024185 165 A------------------YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVA 226 (271)
Q Consensus 165 ~------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 226 (271)
+ ..++.+..+..+... +.+++|+|+++++++++.||.|++||+++++.+..+..|...|.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~ 248 (372)
T 1k8k_C 171 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW--VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL 248 (372)
T ss_dssp CCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC--EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEE
T ss_pred cccccccccccccccccccchhhheEecCCCCCe--EEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeE
Confidence 5 467778888766655 99999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcEEEEeC-CeEEEEcCCC
Q 024185 227 CLKWAPRRAMFVAAS-SVLSFWIPNP 251 (271)
Q Consensus 227 ~~~~s~~~~~l~~~~-~~v~iw~~~~ 251 (271)
+++|+|+++++++++ +.+++|++..
T Consensus 249 ~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 249 AVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EEEEecCCCEEEEEeCCeEEEEEccC
Confidence 999999999999988 8899999987
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=233.12 Aligned_cols=233 Identities=12% Similarity=0.104 Sum_probs=188.2
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEec--CCchhhhhhhhhhccCceEEEEEecCcc--e
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSA--CLQLMIALCLVLLTTALEYGIFVLMLAS--F 84 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~ 84 (271)
|..+.|+.+..++.+.+++...+. ...+..+.+|.+.|.+++|++ +++. |++++.|++|++||+++++ .
T Consensus 23 ~~g~~lasgs~D~~v~lwd~~~~~--~~~~~~l~gH~~~V~~v~~~~~~~~~~-----l~s~s~D~~v~iWd~~~~~~~~ 95 (316)
T 3bg1_A 23 YYGTRLATCSSDRSVKIFDVRNGG--QILIADLRGHEGPVWQVAWAHPMYGNI-----LASCSYDRKVIIWREENGTWEK 95 (316)
T ss_dssp GGGCEEEEEETTTEEEEEEEETTE--EEEEEEEECCSSCEEEEEECCGGGSSC-----EEEEETTSCEEEECCSSSCCCE
T ss_pred CCCCEEEEEeCCCeEEEEEecCCC--cEEEEEEcCCCccEEEEEeCCCCCCCE-----EEEEECCCEEEEEECCCCcceE
Confidence 445566677779999999987652 223456889999999999976 3677 8899999999999998874 4
Q ss_pred eEEEecCC--cceEEEcCC--CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC-------------
Q 024185 85 QGILRLRG--RPTVAFDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND------------- 147 (271)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------- 147 (271)
...+.+|. +.+++|+|+ +.+|++++.|+.|++||++.... ......+.+|...+.+++|+|+
T Consensus 96 ~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 174 (316)
T 3bg1_A 96 SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ-WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQ 174 (316)
T ss_dssp EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC-EEECCBTTSSSSCBCCCEECCCCCC------CCSC
T ss_pred EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC-cceeeeeccccCCcceEEEccccCCcccccccccc
Confidence 55666664 677999998 78999999999999999987542 0112345688999999999997
Q ss_pred ----CcEEEEEecCCeEEEEECCCC---eEEEEeecCCCCCceeeEEECCCC----CEEEEecCCCcEEEEEcCCc---e
Q 024185 148 ----GKSMLLTTTNNNIYVLDAYGG---EKRCGFSLEPSPNTNTEATFTPDG----QYVVSGSGDGTLHAWNINTR---N 213 (271)
Q Consensus 148 ----~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~---~ 213 (271)
+++|++++.|+.|++||++.+ +....+..|... |.+++|+|++ ++|++++.|++|++||+.+. +
T Consensus 175 ~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~--V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~ 252 (316)
T 3bg1_A 175 KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW--VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT 252 (316)
T ss_dssp CCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC--EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC
T ss_pred CccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc--eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc
Confidence 478999999999999999765 456667777665 9999999986 89999999999999999762 1
Q ss_pred -eEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 214 -EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 214 -~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
....+..|...|.+++|+|++++|++++ +.|++|+...
T Consensus 253 ~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 253 WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 2234556888999999999999999987 8899999763
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-35 Score=240.24 Aligned_cols=232 Identities=14% Similarity=0.152 Sum_probs=194.1
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++.+..++.+..++...+... ..+..+ ..+...+++|+++. +++++.||.|++||+++++....+
T Consensus 66 ~~g~~l~~~~~d~~v~i~d~~~~~~~----~~~~~~-~~~~~~~~~~~~~~-----l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 66 KVGSHLYKARLDGHDFLFNTIIRDGS----KMLKRA-DYTAVDTAKLQMRR-----FILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp EEETTEEEEEETTEEEEEECCSEETT----TTSCSC-CEEEEEEECSSSCE-----EEEEETTSCEEEECTTSCEEEEET
T ss_pred ecCCeEEEEEcCCcEEEEEeccccee----eEEecC-CceEEEEEecCCCE-----EEEEECCCCEEEEeCCCcceeeec
Confidence 44456777777889998887655221 123344 45556678999998 889999999999999999888877
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
..|. +.+++|+|++++|++++.|+.|++||+++++. ...+.+|...|.+++|+|++++|++++.|+.|++||++
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 211 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN----PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG 211 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC----CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC----ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence 6664 67799999999999999999999999998876 55677899999999999999999999999999999999
Q ss_pred CCeEEEEeecCCC----------------------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec-CCcc
Q 024185 167 GGEKRCGFSLEPS----------------------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIG 223 (271)
Q Consensus 167 ~~~~~~~~~~~~~----------------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~ 223 (271)
+++.+..+..+.. ...+.+++|+|+++++++++.||.|++||+++++.+..+. .|..
T Consensus 212 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 291 (420)
T 3vl1_A 212 TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC 291 (420)
T ss_dssp TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSS
T ss_pred CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCC
Confidence 9999888875431 1235667779999999999999999999999998877774 5788
Q ss_pred eeEEEEEecCCc-EEEEeC--CeEEEEcCCCCCC
Q 024185 224 VVACLKWAPRRA-MFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 224 ~v~~~~~s~~~~-~l~~~~--~~v~iw~~~~~~~ 254 (271)
.|.+++|+|+++ +|++++ |.|++||+++++.
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 325 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC 325 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence 999999999998 888887 8899999988753
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-34 Score=234.16 Aligned_cols=232 Identities=13% Similarity=0.147 Sum_probs=181.6
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
..|.+++ ++.+.+|+..++.. ...-.+.+|...|.+++|+|+|++ |++|+.||.|++||+++++.+..+.+|
T Consensus 117 n~lAvgl-d~tV~lWd~~tg~~--~~~~~~~~~~~~V~sv~fspdg~~-----lasgs~Dg~v~iWd~~~~~~~~~~~~h 188 (420)
T 4gga_A 117 NVLAVAL-DNSVYLWSASSGDI--LQLLQMEQPGEYISSVAWIKEGNY-----LAVGTSSAEVQLWDVQQQKRLRNMTSH 188 (420)
T ss_dssp SEEEEEE-TTEEEEEETTTCCE--EEEEECCSTTCCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CEEEEEe-CCEEEEEECCCCCE--EEEEEecCCCCcEEEEEECCCCCE-----EEEEECCCeEEEEEcCCCcEEEEEeCC
Confidence 3444444 88999999887732 222235677889999999999998 899999999999999999999999999
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEec--------------------------------------
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG-------------------------------------- 133 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------------------------------------- 133 (271)
.....++++++..+++|+.|+.+++||...... ....+.
T Consensus 189 ~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~---~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~ 265 (420)
T 4gga_A 189 SARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH---HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 265 (420)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEETTSSSC---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC
T ss_pred CCceEEEeeCCCEEEEEeCCCceeEeeecccce---eeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc
Confidence 877777777899999999999999999876432 112222
Q ss_pred --------CCccceEEEEEcCCCc-EEEEE--ecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec--C
Q 024185 134 --------GDTAEVCDIKFSNDGK-SMLLT--TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS--G 200 (271)
Q Consensus 134 --------~~~~~v~~~~~s~~~~-~l~~~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~ 200 (271)
.|...|.+++|+|++. .++++ +.|++|++||++++++...+..+.. +.++.|+|+++.+++++ .
T Consensus 266 ~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~---v~~~~~~~~~~~lv~~sg~~ 342 (420)
T 4gga_A 266 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ---VCSILWSPHYKELISGHGFA 342 (420)
T ss_dssp SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC---EEEEEEETTTTEEEEEECTT
T ss_pred ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc---eeeeeecCCCCeEEEEEecC
Confidence 3445666677776443 33332 3577777777777777766665443 88899999999888754 6
Q ss_pred CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 201 DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 201 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
|+.|++||+.+++++..+.+|.+.|++++|+|||++|++|+ ++|++||+........
T Consensus 343 d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp TCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence 89999999999999999999999999999999999999998 8899999977554433
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=252.24 Aligned_cols=235 Identities=16% Similarity=0.151 Sum_probs=198.4
Q ss_pred eEEeeecceeeEEEEeecccee-eEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 13 ALLFARQNIILILLESLCGIYQ-CMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
.++.+..++.+.+|+....... ....+.+.+|...|.+++++|++++ +++|+.||+|++||+.+++....+.+|
T Consensus 397 ~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~-----l~sgs~Dg~v~vwd~~~~~~~~~~~~h 471 (694)
T 3dm0_A 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF-----ALSGSWDGELRLWDLAAGVSTRRFVGH 471 (694)
T ss_dssp EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSE-----EEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCE-----EEEEeCCCcEEEEECCCCcceeEEeCC
Confidence 3445566899999987543221 2334568899999999999999998 899999999999999999999999888
Q ss_pred C--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC--cEEEEEecCCeEEEEECCC
Q 024185 92 G--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG--KSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 92 ~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~~~d~~~ 167 (271)
. +.+++|+|++++|++++.|++|++||...... ........+|...|.+++|+|++ ..+++++.|++|++||+++
T Consensus 472 ~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~ 550 (694)
T 3dm0_A 472 TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550 (694)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC
Confidence 5 66799999999999999999999999865431 00001124688899999999986 5799999999999999999
Q ss_pred CeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEE
Q 024185 168 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSF 246 (271)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~i 246 (271)
++....+..|... |.+++|+|+++++++++.||.|++||+++++.+..+.. ...|.+++|+|++.++++++ +.|++
T Consensus 551 ~~~~~~~~~h~~~--v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~i 627 (694)
T 3dm0_A 551 CKLRSTLAGHTGY--VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKI 627 (694)
T ss_dssp CCEEEEECCCSSC--EEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEETTEEEE
T ss_pred CcEEEEEcCCCCC--EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEE
Confidence 9999888888766 99999999999999999999999999999999888864 45799999999999998887 88999
Q ss_pred EcCCCCCCCc
Q 024185 247 WIPNPSSNST 256 (271)
Q Consensus 247 w~~~~~~~~~ 256 (271)
||+++++...
T Consensus 628 wd~~~~~~~~ 637 (694)
T 3dm0_A 628 WDLESKSIVE 637 (694)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCCChh
Confidence 9999876544
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=240.76 Aligned_cols=231 Identities=12% Similarity=0.040 Sum_probs=182.7
Q ss_pred cceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc---eeE
Q 024185 10 ITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS---FQG 86 (271)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~ 86 (271)
....++.+..++.+.+++...+. ......+.+|.+.+.+++|+|++++ |++++.|+.|++||+++++ ...
T Consensus 22 ~g~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~-----l~s~s~d~~v~vwd~~~~~~~~~~~ 94 (377)
T 3dwl_C 22 QRTEFVTTTATNQVELYEQDGNG--WKHARTFSDHDKIVTCVDWAPKSNR-----IVTCSQDRNAYVYEKRPDGTWKQTL 94 (377)
T ss_dssp SSSEEECCCSSSCBCEEEEETTE--EEECCCBCCCSSCEEEEEECTTTCC-----EEEEETTSSEEEC------CCCCEE
T ss_pred CCCEEEEecCCCEEEEEEccCCc--eEEEEEEecCCceEEEEEEeCCCCE-----EEEEeCCCeEEEEEcCCCCceeeee
Confidence 33455666678999999887652 1334558899999999999999998 8999999999999999877 555
Q ss_pred EEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecC-CccceEEEEEcCCCcEEEEEecCCeEEEE
Q 024185 87 ILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG-DTAEVCDIKFSNDGKSMLLTTTNNNIYVL 163 (271)
Q Consensus 87 ~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~~ 163 (271)
.+..|. +.+++|+|++++|++++.|+.|++||+++++.. .....+.+ |...|.+++|+|++++|++++.|+.|++|
T Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw 173 (377)
T 3dwl_C 95 VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW-WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVL 173 (377)
T ss_dssp ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C-CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEE
T ss_pred EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc-eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 565554 667999999999999999999999999887521 11344555 99999999999999999999999999999
Q ss_pred ECC------------------CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee----EEEecCC
Q 024185 164 DAY------------------GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE----VACWNGN 221 (271)
Q Consensus 164 d~~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~ 221 (271)
|++ .++++..+ .|.. .+.+++|+|++++|++++.||.|++||+++++. +..+.+|
T Consensus 174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 250 (377)
T 3dwl_C 174 SAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG--WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS 250 (377)
T ss_dssp EECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS--SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS
T ss_pred EEEecccCCCccccccccccchhhhhhcc-cCCc--eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC
Confidence 985 24455555 4554 499999999999999999999999999999887 7788899
Q ss_pred cceeEEEEEecCCcEEEEeC-CeEEEEcCCC
Q 024185 222 IGVVACLKWAPRRAMFVAAS-SVLSFWIPNP 251 (271)
Q Consensus 222 ~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~ 251 (271)
...|.+++|+|++++|++++ +.+.+|+...
T Consensus 251 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~ 281 (377)
T 3dwl_C 251 QLPLRSLLWANESAIVAAGYNYSPILLQGNE 281 (377)
T ss_dssp SSCEEEEEEEETTEEEEEESSSSEEEECCCC
T ss_pred CCceEEEEEcCCCCEEEEEcCCcEEEEEeCC
Confidence 99999999999999999998 6677888763
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=247.77 Aligned_cols=225 Identities=11% Similarity=0.081 Sum_probs=184.0
Q ss_pred cceeeEEEEeeccceeeEEEEEcccccceEEeeEEecC------CchhhhhhhhhhccCceEEEEEecCcce--------
Q 024185 19 QNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSAC------LQLMIALCLVLLTTALEYGIFVLMLASF-------- 84 (271)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------- 84 (271)
.++.+.+|+...+.........+.+|.+.|..++|+|+ +.+ |++++.||+|++||+.++..
T Consensus 181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~-----LAs~s~DgtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGC-----LSFVSQEGTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp -CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCE-----EEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred CCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCce-----EEEEecCCeEEEEEcCCCccccccceee
Confidence 46778888866553322223346678889999999997 345 88999999999999976642
Q ss_pred ---eEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEE--EEcCCC-cEEEEEec
Q 024185 85 ---QGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI--KFSNDG-KSMLLTTT 156 (271)
Q Consensus 85 ---~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~-~~l~~~~~ 156 (271)
...+.+|. +.+++|++++ .|++|+.||+|++||+++++. ....+.+|...|.++ +|+|++ ++|++++.
T Consensus 256 ~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~---~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~ 331 (524)
T 2j04_B 256 EKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEV---PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV 331 (524)
T ss_dssp CSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSS---CSEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred cCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCC---ceEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence 23555554 5679999864 799999999999999987642 134467899999999 578887 89999999
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcE
Q 024185 157 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAM 236 (271)
Q Consensus 157 d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 236 (271)
|++|++||+++++++..+..+.....+.+++|+|+++.+++++.|++|++||++++.++..+.+|.+.|++++|+|+|++
T Consensus 332 D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~ 411 (524)
T 2j04_B 332 DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPM 411 (524)
T ss_dssp TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCB
T ss_pred CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCe
Confidence 99999999999887777766654334788999999999999999999999999999988889899999999999999999
Q ss_pred EEEeC--CeEEEEcCCCC
Q 024185 237 FVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 237 l~~~~--~~v~iw~~~~~ 252 (271)
|++|+ ++|++||+..+
T Consensus 412 l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 412 VLAGSADGSLIITNAARR 429 (524)
T ss_dssp CEEEETTTEEECCBSCSS
T ss_pred EEEEECCCEEEEEechHh
Confidence 99998 89999998765
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-34 Score=227.19 Aligned_cols=241 Identities=10% Similarity=0.105 Sum_probs=198.4
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEec--CCchhhhhhhhhhccCceEEEEEecCc----
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSA--CLQLMIALCLVLLTTALEYGIFVLMLA---- 82 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~~~~~~l~s~~~dg~i~iwd~~~~---- 82 (271)
|....++.+..++.+..++...+.........+.+|...+.+++|+| +++. |++++.||.|++||++++
T Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~-----l~s~~~dg~v~vwd~~~~~~~~ 95 (351)
T 3f3f_A 21 FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI-----IASASYDKTVKLWEEDPDQEEC 95 (351)
T ss_dssp SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSE-----EEEEETTSCEEEEEECTTSCTT
T ss_pred CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCE-----EEEEcCCCeEEEEecCCCcccc
Confidence 44556777778999999998766544456677889999999999999 5777 889999999999999887
Q ss_pred -----ceeEEEecCC--cceEEEcCC--CCEEEEEecCCeEEEEeCCCCCCCcceE---------EEecCCccceEEEEE
Q 024185 83 -----SFQGILRLRG--RPTVAFDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDT---------FLVGGDTAEVCDIKF 144 (271)
Q Consensus 83 -----~~~~~~~~~~--~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------~~~~~~~~~v~~~~~ 144 (271)
+....+..|. +.+++|+|+ +++|++++.||.|++||+++++...... ....+|...+.+++|
T Consensus 96 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (351)
T 3f3f_A 96 SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW 175 (351)
T ss_dssp SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE
T ss_pred cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEe
Confidence 4566666664 566999999 9999999999999999998876411111 011257788999999
Q ss_pred cCC---CcEEEEEecCCeEEEEECCCCeE--EEEeecCCCCCceeeEEECCCC----CEEEEecCCCcEEEEEcCCc---
Q 024185 145 SND---GKSMLLTTTNNNIYVLDAYGGEK--RCGFSLEPSPNTNTEATFTPDG----QYVVSGSGDGTLHAWNINTR--- 212 (271)
Q Consensus 145 s~~---~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~--- 212 (271)
+|+ +..+++++.++.+.+|+...++. ...+..|... |.+++|+|++ +++++++.||.|++||++++
T Consensus 176 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 253 (351)
T 3f3f_A 176 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL--IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSP 253 (351)
T ss_dssp CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC--EEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--
T ss_pred ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc--eeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCc
Confidence 997 99999999999998888877765 4555555554 9999999998 89999999999999999865
Q ss_pred -------------------------------------------eeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEE
Q 024185 213 -------------------------------------------NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFW 247 (271)
Q Consensus 213 -------------------------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw 247 (271)
+.+..+.+|...|++++|+|++++|++++ |.|++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw 333 (351)
T 3f3f_A 254 LASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333 (351)
T ss_dssp -------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred cccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 66777889999999999999999999998 889999
Q ss_pred cCCCCCCCc
Q 024185 248 IPNPSSNST 256 (271)
Q Consensus 248 ~~~~~~~~~ 256 (271)
++.+++...
T Consensus 334 ~~~~~~~~~ 342 (351)
T 3f3f_A 334 KATYSNEFK 342 (351)
T ss_dssp EECTTSCEE
T ss_pred ecCcCcchh
Confidence 999876443
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=232.79 Aligned_cols=231 Identities=15% Similarity=0.143 Sum_probs=192.7
Q ss_pred eeEEeeecceeeEEEEeecccee-eEEEEEcccc-----cceEEeeEEe----cCCchhhhhhhhhhccCceEEEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQ-CMIIEFFATS-----KGIRRGLFLS----ACLQLMIALCLVLLTTALEYGIFVLML 81 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~v~~~~~s----~~~~~~~~~~l~s~~~dg~i~iwd~~~ 81 (271)
..++.+..++.+..++...+... ......+..| ...+.++.|+ |+++.. +++++.||.|++||+++
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR----LVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEE----EEEEETTSCEEEEEEES
T ss_pred cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceE----EEEEeCCCcEEEEeCCc
Confidence 55666677899999988776421 1114556777 5899999999 888762 45788999999999998
Q ss_pred ------cceeE-----EEec-------C--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecC---C---
Q 024185 82 ------ASFQG-----ILRL-------R--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG---D--- 135 (271)
Q Consensus 82 ------~~~~~-----~~~~-------~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~--- 135 (271)
++.+. .+.+ + .+.+++|+|++ ++++++.||.|++||+++++. ...+.. |
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~h~~~ 232 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP----LYNFESQHSMINN 232 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE----EEEEECCC---CC
T ss_pred cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce----eEEEecccccccc
Confidence 76665 6643 3 46779999999 999999999999999998764 556667 8
Q ss_pred ccceEEEEEcCCCcEEEEEecC---CeEEEEECCCCeEEEEeec-------------CCCCCceeeEEECCCCCEEEEec
Q 024185 136 TAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSL-------------EPSPNTNTEATFTPDGQYVVSGS 199 (271)
Q Consensus 136 ~~~v~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~ 199 (271)
...+.+++|+|++++|++++.| +.|++||+++++.+..+.. |... +.+++|+|++++|++++
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~ 310 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW--VMSLSFNDSGETLCSAG 310 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC--EEEEEECSSSSEEEEEE
T ss_pred CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCc--EEEEEECCCCCEEEEEe
Confidence 8999999999999999999999 9999999999999998887 6655 99999999999999999
Q ss_pred CCCcEEEEEcCCceeEEEec------CC---------------cceeEEEEEecCC----------cEEEEeC--CeEEE
Q 024185 200 GDGTLHAWNINTRNEVACWN------GN---------------IGVVACLKWAPRR----------AMFVAAS--SVLSF 246 (271)
Q Consensus 200 ~dg~i~iwd~~~~~~~~~~~------~~---------------~~~v~~~~~s~~~----------~~l~~~~--~~v~i 246 (271)
.||.|++||+++++.+..+. +| ...|.+++|+|++ ++|++++ +.|++
T Consensus 311 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i 390 (397)
T 1sq9_A 311 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 390 (397)
T ss_dssp TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence 99999999999999999998 88 8999999999998 7898887 89999
Q ss_pred EcCCCCC
Q 024185 247 WIPNPSS 253 (271)
Q Consensus 247 w~~~~~~ 253 (271)
|++++++
T Consensus 391 w~~~~g~ 397 (397)
T 1sq9_A 391 FREAGGK 397 (397)
T ss_dssp EEEEC--
T ss_pred EEcCCCC
Confidence 9998764
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=233.69 Aligned_cols=203 Identities=13% Similarity=0.146 Sum_probs=167.9
Q ss_pred EcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc--eeEEEecCC--cceEEEcC--CCCEEEEEecCCe
Q 024185 40 FFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS--FQGILRLRG--RPTVAFDQ--QGLVFAVAMEAGA 113 (271)
Q Consensus 40 ~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~--~~~~~~~~--~~~~l~~~~~d~~ 113 (271)
.+.+|.+.|.+++|+|++++ |++|+.|++|++||+++++ .+..+.+|. +.+++|+| ++++|++++.|++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~-----lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~ 82 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTR-----LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK 82 (316)
T ss_dssp ------CCEEEEEECGGGCE-----EEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC
T ss_pred ecccccCeEEEeeEcCCCCE-----EEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE
Confidence 46789999999999999998 8999999999999998775 456778875 66699986 4899999999999
Q ss_pred EEEEeCCCCCCCcceEEEecCCccceEEEEEcCC--CcEEEEEecCCeEEEEECCCCeE---EEEeecCCCCCceeeEEE
Q 024185 114 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEK---RCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 114 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~v~~~~~ 188 (271)
|++||+++++. .....+.+|...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+..|... +.+++|
T Consensus 83 v~iWd~~~~~~--~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~--v~~~~~ 158 (316)
T 3bg1_A 83 VIIWREENGTW--EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG--CNAVSW 158 (316)
T ss_dssp EEEECCSSSCC--CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC--BCCCEE
T ss_pred EEEEECCCCcc--eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCC--cceEEE
Confidence 99999987653 235567889999999999998 88999999999999999987632 2334445544 888999
Q ss_pred CCC-----------------CCEEEEecCCCcEEEEEcCCc---eeEEEecCCcceeEEEEEecCC----cEEEEeC--C
Q 024185 189 TPD-----------------GQYVVSGSGDGTLHAWNINTR---NEVACWNGNIGVVACLKWAPRR----AMFVAAS--S 242 (271)
Q Consensus 189 ~~~-----------------~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~--~ 242 (271)
+|+ +++|++|+.|+.|++||++.. +.+..+.+|...|.+++|+|++ .+|++++ +
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~ 238 (316)
T 3bg1_A 159 APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG 238 (316)
T ss_dssp CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC
Confidence 997 478999999999999999755 4677789999999999999986 7899987 8
Q ss_pred eEEEEcCCC
Q 024185 243 VLSFWIPNP 251 (271)
Q Consensus 243 ~v~iw~~~~ 251 (271)
+|++|++++
T Consensus 239 ~v~iw~~~~ 247 (316)
T 3bg1_A 239 RVFIWTCDD 247 (316)
T ss_dssp EEEEEECSS
T ss_pred eEEEEEccC
Confidence 899999876
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=228.21 Aligned_cols=232 Identities=10% Similarity=0.136 Sum_probs=192.5
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecC--CchhhhhhhhhhccCceEEEEEecCcc--e
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSAC--LQLMIALCLVLLTTALEYGIFVLMLAS--F 84 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~--~ 84 (271)
|..+.++.+..++.+..++...+. ......+.+|.+.+.+++|+++ +.+ |++++.||.|++||+++++ .
T Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~-----l~s~~~dg~v~iwd~~~~~~~~ 93 (379)
T 3jrp_A 21 YYGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFGTI-----LASCSYDGKVLIWKEENGRWSQ 93 (379)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSE-----EEEEETTSCEEEEEEETTEEEE
T ss_pred CCCCEEEEEECCCcEEEEecCCCc--ceeeeEecCCCCcEEEEEeCCCCCCCE-----EEEeccCCEEEEEEcCCCceeE
Confidence 455667777789999999886432 2445668899999999999977 777 8899999999999999987 5
Q ss_pred eEEEecC--CcceEEEcCC--CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-------------C
Q 024185 85 QGILRLR--GRPTVAFDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-------------D 147 (271)
Q Consensus 85 ~~~~~~~--~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------------~ 147 (271)
...+..| .+.+++|+|+ +++|++++.|+.|++||+.+... .....+.+|...|.+++|+| +
T Consensus 94 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T 3jrp_A 94 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 171 (379)
T ss_dssp EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC--CCEEEEECCTTCEEEEEECCCC----------CT
T ss_pred eeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc--eeeEEecCCCCceEEEEEcCccccccccccCCCC
Confidence 6666655 4677999999 99999999999999999988754 33556678999999999999 6
Q ss_pred CcEEEEEecCCeEEEEECCCCe----EEEEeecCCCCCceeeEEECCC---CCEEEEecCCCcEEEEEcCCce---eEEE
Q 024185 148 GKSMLLTTTNNNIYVLDAYGGE----KRCGFSLEPSPNTNTEATFTPD---GQYVVSGSGDGTLHAWNINTRN---EVAC 217 (271)
Q Consensus 148 ~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~---~~~~ 217 (271)
++++++++.|+.|++||+++++ ....+..|... +.+++|+|+ ++++++++.||.|++||++++. ....
T Consensus 172 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~--v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 249 (379)
T 3jrp_A 172 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW--VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL 249 (379)
T ss_dssp TCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC--EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc--EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeee
Confidence 9999999999999999998764 34456666655 999999999 8999999999999999998864 2222
Q ss_pred e--cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 218 W--NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 218 ~--~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
+ ..|...|.+++|+|++++|++++ |.|++|++..
T Consensus 250 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 250 LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred eccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 2 34888999999999999999887 8899999874
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-35 Score=241.55 Aligned_cols=194 Identities=8% Similarity=0.040 Sum_probs=153.3
Q ss_pred ecce-eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEec-CCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 9 PITQ-ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSA-CLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 9 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
|... .|+.+..+|.+.+|+...+.. .....+.+|.+.|.+++|+| ++.. |++++.||+|++||++++....
T Consensus 129 P~~~~~lasGs~dg~i~lWd~~~~~~--~~~~~~~gH~~~V~~l~f~p~~~~~-----l~s~s~D~~v~iwd~~~~~~~~ 201 (435)
T 4e54_B 129 PTHPSTVAVGSKGGDIMLWNFGIKDK--PTFIKGIGAGGSITGLKFNPLNTNQ-----FYASSMEGTTRLQDFKGNILRV 201 (435)
T ss_dssp SSCTTCEEEEETTSCEEEECSSCCSC--CEEECCCSSSCCCCEEEECSSCTTE-----EEEECSSSCEEEEETTSCEEEE
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCc--eeEEEccCCCCCEEEEEEeCCCCCE-----EEEEeCCCEEEEeeccCCceeE
Confidence 4344 455677899999998765532 22334678999999999998 5666 8899999999999998765443
Q ss_pred EEecCC----cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc-EEEEEecCCeEE
Q 024185 87 ILRLRG----RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIY 161 (271)
Q Consensus 87 ~~~~~~----~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~ 161 (271)
....+. +.+++|+|++++|++|+.||.|++||++... ...+.+|...|.+++|+|++. ++++++.|+.|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-----~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~ 276 (435)
T 4e54_B 202 FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-----LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276 (435)
T ss_dssp EECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-----CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred EeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-----eEEEecccceEEeeeecCCCceEEEEecCcceee
Confidence 333332 3559999999999999999999999997644 445678999999999999876 677899999999
Q ss_pred EEECCCCeEEEEe---ecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE
Q 024185 162 VLDAYGGEKRCGF---SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 216 (271)
Q Consensus 162 ~~d~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 216 (271)
+||+++.+....+ ..|.. .|.+++|+|+|++|++++.||.|++||+.+++...
T Consensus 277 iwd~~~~~~~~~~~~~~~h~~--~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~ 332 (435)
T 4e54_B 277 IWDLRQVRGKASFLYSLPHRH--PVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL 332 (435)
T ss_dssp EEETTTCCSSSCCSBCCBCSS--CEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEE
T ss_pred EEecccccccceEEEeeeccc--cccceeECCCCCeeEEEcCCCEEEEEECCCCccce
Confidence 9999887654433 33444 49999999999999999999999999987655433
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=225.83 Aligned_cols=232 Identities=11% Similarity=0.143 Sum_probs=193.6
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|....++.+..++.+..++...+ .....+.+|.+.+.+++|+|+++. +++++.||.|++||+++++.+..+
T Consensus 42 ~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~-----l~s~~~dg~i~iwd~~~~~~~~~~ 112 (369)
T 3zwl_B 42 KEGDLLFSCSKDSSASVWYSLNG----ERLGTLDGHTGTIWSIDVDCFTKY-----CVTGSADYSIKLWDVSNGQCVATW 112 (369)
T ss_dssp TTSCEEEEEESSSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSE-----EEEEETTTEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEeCCCc----hhhhhhhhcCCcEEEEEEcCCCCE-----EEEEeCCCeEEEEECCCCcEEEEe
Confidence 44456666777899999987766 445668899999999999999998 889999999999999887765554
Q ss_pred ecC-------------------------------------------------------------CcceEEEcCCCCEEEE
Q 024185 89 RLR-------------------------------------------------------------GRPTVAFDQQGLVFAV 107 (271)
Q Consensus 89 ~~~-------------------------------------------------------------~~~~~~~~~~~~~l~~ 107 (271)
... .+.+++|+|++++|++
T Consensus 113 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 192 (369)
T 3zwl_B 113 KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIA 192 (369)
T ss_dssp ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEE
T ss_pred ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEE
Confidence 311 2233666677777777
Q ss_pred EecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEE
Q 024185 108 AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 187 (271)
Q Consensus 108 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~ 187 (271)
++.||.|++||+++.. .....+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+. +.. .+..++
T Consensus 193 ~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~--~~~~~~ 266 (369)
T 3zwl_B 193 GHKDGKISKYDVSNNY---EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDC--PLNTAV 266 (369)
T ss_dssp EETTSEEEEEETTTTT---EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS--CEEEEE
T ss_pred EcCCCEEEEEECCCCc---EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCC--CceeEE
Confidence 7778888888887632 1255567789999999999999999999999999999999999888887 333 389999
Q ss_pred ECCCCCEEEEecCCC--------------cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 188 FTPDGQYVVSGSGDG--------------TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 188 ~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
|+|+++++++++.++ .+++||..+++.+..+.+|...|.+++|+|++++|++++ |.|++|+++.
T Consensus 267 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 267 ITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp ECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 999999999999888 899999999999999999999999999999999999997 8899999987
Q ss_pred CCCC
Q 024185 252 SSNS 255 (271)
Q Consensus 252 ~~~~ 255 (271)
+...
T Consensus 347 ~~~~ 350 (369)
T 3zwl_B 347 SYFD 350 (369)
T ss_dssp HHHT
T ss_pred ccch
Confidence 6543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=238.72 Aligned_cols=223 Identities=18% Similarity=0.252 Sum_probs=191.8
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++.+..++.+..++.... .+..+..|...+.+++++|+++. +++++.|+.+++||. +++.+..+
T Consensus 313 ~~~~~l~t~~~d~~i~~w~~~~~-----~~~~~~~~~~~v~~~~~s~~g~~-----l~~~~~dg~v~~~~~-~~~~~~~~ 381 (577)
T 2ymu_A 313 PDGQTIASASDDKTVKLWNRNGQ-----HLQTLTGHSSSVWGVAFSPDGQT-----IASASDDKTVKLWNR-NGQLLQTL 381 (577)
T ss_dssp TTSSEEEEEETTSCEEEEETTSC-----EEEEECCCSSCEEEEEECTTSSE-----EEEEETTSEEEEEET-TCCEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCC-----eeEEEeCCCCCEEEEEECCCCCE-----EEEEeCCCEEEEEcC-CCCEEEEe
Confidence 34455666677888888874332 33457788999999999999998 889999999999996 67778888
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
..|. +.+++|+|++++|++++.|+.|++||.. ++. ...+.+|...|.+++|+||+++|++++.|+.|++||.
T Consensus 382 ~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~----~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~- 455 (577)
T 2ymu_A 382 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQL----LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR- 455 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCE----EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-
T ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCE----EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-
Confidence 7774 5679999999999999999999999964 333 5567789999999999999999999999999999995
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
+++.+..+..|... +.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++ +.|
T Consensus 456 ~~~~~~~~~~~~~~--v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v 532 (577)
T 2ymu_A 456 NGQLLQTLTGHSSS--VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 532 (577)
T ss_dssp TSCEEEEEECCSSC--EEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred CCCEEEEEcCCCCC--EEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEE
Confidence 56777888887766 999999999999999999999999995 7889999999999999999999999999997 889
Q ss_pred EEEcCCC
Q 024185 245 SFWIPNP 251 (271)
Q Consensus 245 ~iw~~~~ 251 (271)
++||...
T Consensus 533 ~lwd~~~ 539 (577)
T 2ymu_A 533 KLWNRNG 539 (577)
T ss_dssp EEECTTS
T ss_pred EEEeCCC
Confidence 9999643
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=239.95 Aligned_cols=205 Identities=9% Similarity=0.037 Sum_probs=169.4
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc--ceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA--SFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKL 116 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i 116 (271)
+..+.+.|.+++|+|++++ +++++.|+.|++||+.++ +.+..+.+|. +.+++|+|++++|++++.|+.|++
T Consensus 7 ~~~~~~~v~~~~~s~~g~~-----l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTE-----FVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV 81 (377)
T ss_dssp EEECSSCCSCCEECSSSSE-----EECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred EecCCCcEEEEEECCCCCE-----EEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 4556778999999999998 889999999999999988 6777777774 667999999999999999999999
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE---EEEeec-CCCCCceeeEEECCCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK---RCGFSL-EPSPNTNTEATFTPDG 192 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~-~~~~~~v~~~~~~~~~ 192 (271)
||+.+++. ......+.+|...|.+++|+|++++|++++.|+.|++||+++++. ...+.. |... +.+++|+|++
T Consensus 82 wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~ 158 (377)
T 3dwl_C 82 YEKRPDGT-WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRST--ILSLDWHPNN 158 (377)
T ss_dssp C------C-CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSC--EEEEEECTTS
T ss_pred EEcCCCCc-eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCC--eEEEEEcCCC
Confidence 99988761 122566778999999999999999999999999999999998873 566665 5554 9999999999
Q ss_pred CEEEEecCCCcEEEEEcC------------------CceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 193 QYVVSGSGDGTLHAWNIN------------------TRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
+++++++.|+.|++||+. .++++..+ +|...|.+++|+|++++|++++ +.|++||+.++
T Consensus 159 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 159 VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 999999999999999985 35566677 8999999999999999999997 88999999988
Q ss_pred CC
Q 024185 253 SN 254 (271)
Q Consensus 253 ~~ 254 (271)
+.
T Consensus 238 ~~ 239 (377)
T 3dwl_C 238 EQ 239 (377)
T ss_dssp TS
T ss_pred CC
Confidence 76
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=220.32 Aligned_cols=232 Identities=15% Similarity=0.126 Sum_probs=193.6
Q ss_pred eeEEeeecceeeEEEEeeccceee-EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc--eeEEE
Q 024185 12 QALLFARQNIILILLESLCGIYQC-MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS--FQGIL 88 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~ 88 (271)
..+++...++.+..++...+.... ........|...+.++.|+|+++. +++++.||.|++||+++++ ....+
T Consensus 63 ~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----l~~~~~d~~i~~~d~~~~~~~~~~~~ 137 (337)
T 1gxr_A 63 TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT-----LIVGGEASTLSIWDLAAPTPRIKAEL 137 (337)
T ss_dssp SSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE-----EEEEESSSEEEEEECCCC--EEEEEE
T ss_pred CcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCE-----EEEEcCCCcEEEEECCCCCcceeeec
Confidence 334444448999999876553221 111223378899999999999998 8899999999999999877 45556
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
..+. +.+++|+|+++++++++.||.|++||+++++. ...+.+|...+.+++|+|+++++++++.|+.|++||++
T Consensus 138 ~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL----VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce----eeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence 6554 56799999999999999999999999998765 66677899999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
+++.+..+. +.. .+.+++|+|+++++++++.++.|++||+++++.. .+..|...|.+++|+|++++|++++ +.+
T Consensus 214 ~~~~~~~~~-~~~--~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 289 (337)
T 1gxr_A 214 EGRQLQQHD-FTS--QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLL 289 (337)
T ss_dssp TTEEEEEEE-CSS--CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCceEeeec-CCC--ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcE
Confidence 999888775 333 3999999999999999999999999999987754 5678999999999999999999997 889
Q ss_pred EEEcCCCCCCCc
Q 024185 245 SFWIPNPSSNST 256 (271)
Q Consensus 245 ~iw~~~~~~~~~ 256 (271)
++||+++++...
T Consensus 290 ~~~~~~~~~~~~ 301 (337)
T 1gxr_A 290 NAWRTPYGASIF 301 (337)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCeEEE
Confidence 999999887653
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-33 Score=220.10 Aligned_cols=230 Identities=13% Similarity=0.118 Sum_probs=185.7
Q ss_pred EEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-
Q 024185 14 LLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG- 92 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~- 92 (271)
++....++.+.+|+..++.. ...-.+.+|...|.+++|+|++++ +++|+.||+|++||+++++.+..+.+|.
T Consensus 38 ~lAvg~D~tV~iWd~~tg~~--~~~~~~~~~~~~V~~v~~~~~~~~-----l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~ 110 (318)
T 4ggc_A 38 VLAVALDNSVYLWSASSGDI--LQLLQMEQPGEYISSVAWIKEGNY-----LAVGTSSAEVQLWDVQQQKRLRNMTSHSA 110 (318)
T ss_dssp EEEEEETTEEEEEETTTCCE--EEEEECCSTTCCEEEEEECTTSSE-----EEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEEEEeCCEEEEEECCCCCE--EEEEEecCCCCeEEEEEECCCCCE-----EEEEECCCcEEEeecCCceeEEEecCccc
Confidence 44444588999999877722 222235678889999999999998 8999999999999999887766554331
Q ss_pred ------------------------------------------cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEE
Q 024185 93 ------------------------------------------RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF 130 (271)
Q Consensus 93 ------------------------------------------~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 130 (271)
+..+.++++++++++++.|+.|++||+++++.......
T Consensus 111 ~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 190 (318)
T 4ggc_A 111 RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 190 (318)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE
T ss_pred eEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee
Confidence 23367888999999999999999999988765334455
Q ss_pred EecCCccceEEEEEcCCCcEE---EEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec--CCCcEE
Q 024185 131 LVGGDTAEVCDIKFSNDGKSM---LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS--GDGTLH 205 (271)
Q Consensus 131 ~~~~~~~~v~~~~~s~~~~~l---~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~ 205 (271)
....+.+.|.+++++|++..+ ++++.++.|++||.+........... .. +..+.|+|+++.+++++ .|+.|+
T Consensus 191 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~-~~--v~~~~~~~~~~~~~~~sg~~d~~i~ 267 (318)
T 4ggc_A 191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQ--VCSILWSPHYKELISGHGFAQNQLV 267 (318)
T ss_dssp EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS-SC--EEEEEEETTTTEEEEEECTTTCCEE
T ss_pred eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce-ee--eeeeeecccccceEEEEEcCCCEEE
Confidence 566788899999999976543 34567899999999988876665433 33 88899999999887654 799999
Q ss_pred EEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 206 AWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 206 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
+||+++++++..+.+|.+.|++++|+|+|++|++++ ++|++||+....
T Consensus 268 iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 268 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999999999999999999999999999999999998 899999986543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-34 Score=232.52 Aligned_cols=240 Identities=9% Similarity=0.023 Sum_probs=198.2
Q ss_pred eeEEeeecceeeEEEEeeccce--eeEEEEEcccccceEEeeEEecC----C---chhhhhhhhhhccCceEEEEEecCc
Q 024185 12 QALLFARQNIILILLESLCGIY--QCMIIEFFATSKGIRRGLFLSAC----L---QLMIALCLVLLTTALEYGIFVLMLA 82 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~----~---~~~~~~~l~s~~~dg~i~iwd~~~~ 82 (271)
..++.+..++.+..++...+.. .......+..|...+.++.|+|+ + +. +++++.||.|++||++++
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~-----l~s~~~dg~i~iw~~~~~ 101 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL-----VATTSFSGDLLFYRITRE 101 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE-----EEEEETTSCEEEEEEEEC
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE-----EEEEcCCCCEEEEEccCC
Confidence 5566667789999999877630 00123446689999999999999 8 87 889999999999999988
Q ss_pred ce-----eEEEecC-------CcceEEEc----CCCCE-EEEEecCCeEEEEeCCC------CCCCcc-eEEEe------
Q 024185 83 SF-----QGILRLR-------GRPTVAFD----QQGLV-FAVAMEAGAIKLFDSRS------YDKGPF-DTFLV------ 132 (271)
Q Consensus 83 ~~-----~~~~~~~-------~~~~~~~~----~~~~~-l~~~~~d~~i~i~d~~~------~~~~~~-~~~~~------ 132 (271)
+. ...+..+ .+.+++|+ |++++ |++++.||.|++||+.+ .+.... ....+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (397)
T 1sq9_A 102 DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES 181 (397)
T ss_dssp TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECC
T ss_pred cccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeecc
Confidence 86 7777655 35679999 99999 99999999999999987 543110 01133
Q ss_pred -cCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeec---C---CCCCceeeEEECCCCCEEEEecCC---C
Q 024185 133 -GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL---E---PSPNTNTEATFTPDGQYVVSGSGD---G 202 (271)
Q Consensus 133 -~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~---~~~~~v~~~~~~~~~~~l~~~~~d---g 202 (271)
..|...+.+++|+|++ ++++++.|+.|++||+++++.+..+.. | ... +.+++|+|+++++++++.| |
T Consensus 182 ~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~--i~~i~~~~~~~~l~~~~~d~~~g 258 (397)
T 1sq9_A 182 PMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS--IRSVKFSPQGSLLAIAHDSNSFG 258 (397)
T ss_dssp SSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC--EEEEEECSSTTEEEEEEEETTEE
T ss_pred ccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc--cceEEECCCCCEEEEEecCCCCc
Confidence 4588899999999999 999999999999999999999998887 6 544 9999999999999999999 9
Q ss_pred cEEEEEcCCceeEEEecC-------------CcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 203 TLHAWNINTRNEVACWNG-------------NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 203 ~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
.|++||+++++.+..+.+ |...|.+++|+|++++|++++ +.|++||+.+++......
T Consensus 259 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 259 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 999999999999999988 999999999999999999997 889999999877655443
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-34 Score=233.65 Aligned_cols=229 Identities=14% Similarity=0.141 Sum_probs=189.5
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|....++.+..++.+..++...+ .....+.+|.+.+.+++|+|+++. |++++.|+.|++||+++++.+..+
T Consensus 107 ~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~-----l~s~s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 107 LQMRRFILGTTEGDIKVLDSNFN----LQREIDQAHVSEITKLKFFPSGEA-----LISSSQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp SSSCEEEEEETTSCEEEECTTSC----EEEEETTSSSSCEEEEEECTTSSE-----EEEEETTSEEEEEETTTCCCCEEE
T ss_pred cCCCEEEEEECCCCEEEEeCCCc----ceeeecccccCccEEEEECCCCCE-----EEEEeCCCeEEEEeCCCCcCceEE
Confidence 44456777778899999987655 455668899999999999999998 889999999999999999999999
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecC---Ccc---------------------ceEEE
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG---DTA---------------------EVCDI 142 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~---------------------~v~~~ 142 (271)
.+|. +.+++|+|++++|++++.|+.|++||+++++. ...+.. |.. .+.++
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~ 253 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT----IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL 253 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE----EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTT
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce----eEEeecCCCCCCCccEEEEecCCcceeeecccCcccce
Confidence 8775 56799999999999999999999999998764 333332 333 44445
Q ss_pred EEcCCCcEEEEEecCCeEEEEECCCCeEEEEeec-CCCCCceeeEEECCCCC-EEEEecCCCcEEEEEcCCcee-EEEec
Q 024185 143 KFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-EPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTRNE-VACWN 219 (271)
Q Consensus 143 ~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~ 219 (271)
+|+|++++|++++.||.|++||+++++.+..+.. +. ..+.+++|+|+++ ++++++.||.|++||+++++. +..+.
T Consensus 254 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 331 (420)
T 3vl1_A 254 EFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFT--CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL 331 (420)
T ss_dssp CSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTS--SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE
T ss_pred EEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccC--CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh
Confidence 5688999999999999999999999987777643 33 3499999999999 999999999999999998754 66676
Q ss_pred C-CcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 220 G-NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 220 ~-~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
. |...|.++. .|++++|++++ +.|++|++....
T Consensus 332 ~~~~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 332 INEGTPINNVY-FAAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp ESTTSCEEEEE-EETTEEEEEETTTEEEEEEEECCTT
T ss_pred ccCCCCceEEE-eCCCCEEEEecCCccEEEEeccCCC
Confidence 5 667788875 55788999998 889999998743
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=234.82 Aligned_cols=238 Identities=14% Similarity=0.102 Sum_probs=197.7
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecC-CchhhhhhhhhhccCceEEEEEecCcc----
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSAC-LQLMIALCLVLLTTALEYGIFVLMLAS---- 83 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~---- 83 (271)
|....++.+..++.+..++.............+.+|.+.+.++.|+|+ +.. +++++.||.|++||+++++
T Consensus 77 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-----l~s~~~dg~v~iwd~~~~~~~~~ 151 (416)
T 2pm9_A 77 HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNV-----LASGGNNGEIFIWDMNKCTESPS 151 (416)
T ss_dssp SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTB-----EEEECSSSCEEBCBTTTTSSCTT
T ss_pred CCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCE-----EEEEcCCCeEEEEECCCCccccc
Confidence 444566777788999999887622222355668899999999999998 666 8899999999999998876
Q ss_pred --eeEEE---ecC--CcceEEEcCC-CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCC------ccceEEEEEcCCC-
Q 024185 84 --FQGIL---RLR--GRPTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD------TAEVCDIKFSNDG- 148 (271)
Q Consensus 84 --~~~~~---~~~--~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~------~~~v~~~~~s~~~- 148 (271)
....+ ..| .+.+++|+|+ +.+|++++.|+.|++||+++++. ...+..+ ...+.+++|+|++
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (416)
T 2pm9_A 152 NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE----VIHLSYTSPNSGIKQQLSVVEWHPKNS 227 (416)
T ss_dssp TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE----EEEECCCCCSSCCCCCEEEEEECSSCT
T ss_pred cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc----ceEEeccccccccCCceEEEEECCCCC
Confidence 33222 333 4677999999 78999999999999999998765 4445544 7889999999997
Q ss_pred cEEEEEecCC---eEEEEECCCC-eEEEEee-cCCCCCceeeEEECC-CCCEEEEecCCCcEEEEEcCCceeEEEecCCc
Q 024185 149 KSMLLTTTNN---NIYVLDAYGG-EKRCGFS-LEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNEVACWNGNI 222 (271)
Q Consensus 149 ~~l~~~~~d~---~i~~~d~~~~-~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 222 (271)
.++++++.|+ .|++||++++ +....+. .|... +.+++|+| +++++++++.||.|++||+++++.+..+.+|.
T Consensus 228 ~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~ 305 (416)
T 2pm9_A 228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG--ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG 305 (416)
T ss_dssp TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC--EEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS
T ss_pred CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc--eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC
Confidence 6899999998 9999999986 5566666 56654 99999999 99999999999999999999999999999999
Q ss_pred ceeEEEEEecCC-cEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 223 GVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 223 ~~v~~~~~s~~~-~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
..|.+++|+|++ .+|++++ +.|++||+.+.+....
T Consensus 306 ~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 306 NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence 999999999999 7999998 8899999988765443
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=228.42 Aligned_cols=225 Identities=9% Similarity=0.098 Sum_probs=194.4
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++.+..++.+..++ ..+ .....+..|...+.++.|+|+++. +++++.||.|++||+++++.+..+
T Consensus 118 ~~~~~l~~~~~dg~i~i~~-~~~----~~~~~~~~~~~~v~~~~~~~~~~~-----l~~~~~d~~i~iwd~~~~~~~~~~ 187 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWN-KTG----ALLNVLNFHRAPIVSVKWNKDGTH-----IISMDVENVTILWNVISGTVMQHF 187 (425)
T ss_dssp TTSSEEEEEETTSCEEEEE-TTS----CEEEEECCCCSCEEEEEECTTSSE-----EEEEETTCCEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEe-CCC----CeeeeccCCCccEEEEEECCCCCE-----EEEEecCCeEEEEECCCCcEEEEe
Confidence 3445667777889999998 334 344567889999999999999998 889999999999999877655433
Q ss_pred e--------------------------------------------------------cC--CcceEEEcCCCCEEEEEec
Q 024185 89 R--------------------------------------------------------LR--GRPTVAFDQQGLVFAVAME 110 (271)
Q Consensus 89 ~--------------------------------------------------------~~--~~~~~~~~~~~~~l~~~~~ 110 (271)
. .| .+.+++|+|++++|++++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 267 (425)
T 1r5m_A 188 ELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD 267 (425)
T ss_dssp CCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred eccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC
Confidence 2 22 2456899999999999999
Q ss_pred CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECC
Q 024185 111 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 190 (271)
Q Consensus 111 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 190 (271)
|+.|++||+++++. ...+.+|...+.+++|+|++ .+++++.|+.|++||+++++.+..+..+... +.+++|+|
T Consensus 268 d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--i~~~~~s~ 340 (425)
T 1r5m_A 268 DGTLRIWHGGNGNS----QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVP--IFAGRISQ 340 (425)
T ss_dssp TSCEEEECSSSBSC----SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCC--EEEEEECT
T ss_pred CCEEEEEECCCCcc----ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCcc--EEEEEEcC
Confidence 99999999998776 55667899999999999999 9999999999999999999999988877765 99999999
Q ss_pred CCCEEEEecCCCcEEEEEcCCce--------------------eEEEecCCcc--eeEEEEEecCCcEEEEeC--CeEEE
Q 024185 191 DGQYVVSGSGDGTLHAWNINTRN--------------------EVACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSF 246 (271)
Q Consensus 191 ~~~~l~~~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~--~v~~~~~s~~~~~l~~~~--~~v~i 246 (271)
+++++++++.||.|++||+++++ .+..+.+|.. .|.+++|+|++++|++++ |.|++
T Consensus 341 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420 (425)
T ss_dssp TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence 99999999999999999999888 8889999976 999999999999999887 88999
Q ss_pred EcCC
Q 024185 247 WIPN 250 (271)
Q Consensus 247 w~~~ 250 (271)
|+++
T Consensus 421 w~~~ 424 (425)
T 1r5m_A 421 VAIP 424 (425)
T ss_dssp EECC
T ss_pred Eeec
Confidence 9986
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=227.19 Aligned_cols=232 Identities=15% Similarity=0.126 Sum_probs=190.4
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec-CcceeEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM-LASFQGI 87 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~ 87 (271)
|....++.+..++.+..++...+ ..+..+.+|...+.++.|++ .. +++++.||.|++||++ .+..+..
T Consensus 144 ~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~-----l~~~~~dg~i~i~d~~~~~~~~~~ 212 (401)
T 4aez_A 144 HDGSFLSVGLGNGLVDIYDVESQ----TKLRTMAGHQARVGCLSWNR--HV-----LSSGSRSGAIHHHDVRIANHQIGT 212 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEEET--TE-----EEEEETTSEEEEEETTSSSCEEEE
T ss_pred CCCCEEEEECCCCeEEEEECcCC----eEEEEecCCCCceEEEEECC--CE-----EEEEcCCCCEEEEecccCcceeeE
Confidence 44456777778999999988766 44556889999999999954 45 7899999999999998 4566777
Q ss_pred EecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc-EEEEEe--cCCeEEE
Q 024185 88 LRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTT--TNNNIYV 162 (271)
Q Consensus 88 ~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~d~~i~~ 162 (271)
+..|. +.+++|+|++++|++++.|+.|++||+++++. ...+.+|...|.+++|+|++. ++++++ .|+.|++
T Consensus 213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i 288 (401)
T 4aez_A 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP----KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288 (401)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE----EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc----cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence 77774 56699999999999999999999999998765 667778999999999999765 455554 6999999
Q ss_pred EECCCCeEEEEeecCCCCCceeeEEECCCCCEEEE--ecCCCcEEEEEcCCceeEE--EecCCcceeEEEEEecCCcEEE
Q 024185 163 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS--GSGDGTLHAWNINTRNEVA--CWNGNIGVVACLKWAPRRAMFV 238 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~ 238 (271)
||+++++.+..+..+ . .+.+++|+|+++++++ |+.||.|++||+.+++... .+.+|...|.+++|+|++++|+
T Consensus 289 ~d~~~~~~~~~~~~~-~--~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~ 365 (401)
T 4aez_A 289 WNAATGARVNTVDAG-S--QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILS 365 (401)
T ss_dssp EETTTCCEEEEEECS-S--CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEE
T ss_pred EECCCCCEEEEEeCC-C--cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEE
Confidence 999999998888643 3 3999999999999998 5589999999999865544 4678999999999999999999
Q ss_pred EeC--CeEEEEcCCCCCCCcCC
Q 024185 239 AAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 239 ~~~--~~v~iw~~~~~~~~~~~ 258 (271)
+++ |.|++|++.+++.....
T Consensus 366 s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 366 TAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EECTTSEEEEEECCC-------
T ss_pred EEeCCCcEEEEECCCCcccccc
Confidence 998 88999999988766543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=232.90 Aligned_cols=227 Identities=13% Similarity=0.126 Sum_probs=188.1
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEec-CCchhhhhhhhhhccCceEEEEEecCcceeEEE--
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSA-CLQLMIALCLVLLTTALEYGIFVLMLASFQGIL-- 88 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-- 88 (271)
..++.+..++.+..++...+ ..+..+.+|...+.++.|+| ++.. +++++.||.|++||+++++.+..+
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~-----l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITM----QCIKHYVGHGNAINELKFHPRDPNL-----LLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp EEEEEEETTCEEEEECTTTC----CEEEEEESCCSCEEEEEECSSCTTE-----EEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CEEEEecCCCEEEEEEchhc----eEeeeecCCCCcEEEEEECCCCCCE-----EEEEeCCCeEEEEEeecCeEEEEecc
Confidence 35666778899999987766 44556788999999999999 7887 889999999999999999988887
Q ss_pred -ecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCc------------------------ceEEEecCCccceEE
Q 024185 89 -RLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP------------------------FDTFLVGGDTAEVCD 141 (271)
Q Consensus 89 -~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~------------------------~~~~~~~~~~~~v~~ 141 (271)
..| .+.+++|+|++++|++++.||.|++||+++++... .......+|...|.+
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 445 46679999999999999999999999998754200 011223448899999
Q ss_pred EEEcCCCcEEEEEecCCeEEEEECCCCeE--------------EEEeecCCCCCceeeEEECCC--CCEEEEecCCCcEE
Q 024185 142 IKFSNDGKSMLLTTTNNNIYVLDAYGGEK--------------RCGFSLEPSPNTNTEATFTPD--GQYVVSGSGDGTLH 205 (271)
Q Consensus 142 ~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--------------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~ 205 (271)
++|+ ++++++++.|+.|++||+++++. +..+..+... +.+++|+|+ +++|++++.||.|+
T Consensus 237 ~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~~~l~~~~~dg~i~ 312 (366)
T 3k26_A 237 VRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD--IWYMRFSMDFWQKMLALGNQVGKLY 312 (366)
T ss_dssp EEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC--SSCCCCEECTTSSEEEEECTTSCEE
T ss_pred EEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc--EEEEEEcCCCCCcEEEEEecCCcEE
Confidence 9999 67999999999999999987643 6667766655 888999999 99999999999999
Q ss_pred EEEcCCce----eEEEecCC--cceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 206 AWNINTRN----EVACWNGN--IGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 206 iwd~~~~~----~~~~~~~~--~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
+||+.+++ ....+.+| ...|.+++|+|++++|++++ |.|++||+.+
T Consensus 313 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 313 VWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 99999875 34477777 78999999999999999997 8899999853
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=248.80 Aligned_cols=238 Identities=12% Similarity=0.121 Sum_probs=208.4
Q ss_pred eecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
.|....++.+..++.+..|+...+ .....+..|.+.+.++.|+|+++. +++++.||.|++||+++++.+..
T Consensus 22 sp~~~~la~~~~~g~v~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~-----l~~~~~dg~i~vw~~~~~~~~~~ 92 (814)
T 3mkq_A 22 HPTEPWVLTTLYSGRVEIWNYETQ----VEVRSIQVTETPVRAGKFIARKNW-----IIVGSDDFRIRVFNYNTGEKVVD 92 (814)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEEGGGTE-----EEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEeCCCEEEEEECCCC----ceEEEEecCCCcEEEEEEeCCCCE-----EEEEeCCCeEEEEECCCCcEEEE
Confidence 355567777788999999998776 455668899999999999999998 88999999999999999999999
Q ss_pred EecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEE
Q 024185 88 LRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 88 ~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d 164 (271)
+..|. +.+++|+|++++|++++.||.|++||+.++.. ....+.+|...|.+++|+| +++.+++++.||.|++||
T Consensus 93 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd 169 (814)
T 3mkq_A 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA---LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE---EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce---EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 98775 56799999999999999999999999987632 2556778999999999999 899999999999999999
Q ss_pred CCCCeEEEEeecCCCCCceeeEEECC--CCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 165 AYGGEKRCGFSLEPSPNTNTEATFTP--DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
+++++....+..+.. ..+.+++|+| +++++++++.||.|++||+.+++.+..+.+|...|.+++|+|+++++++++
T Consensus 170 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 248 (814)
T 3mkq_A 170 LGQSTPNFTLTTGQE-RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248 (814)
T ss_dssp TTCSSCSEEEECCCT-TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred CCCCcceeEEecCCC-CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence 998887777665542 3488899999 999999999999999999999999999999999999999999999999997
Q ss_pred -CeEEEEcCCCCCCCcCC
Q 024185 242 -SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 242 -~~v~iw~~~~~~~~~~~ 258 (271)
|.|++||+.+++.....
T Consensus 249 dg~v~vwd~~~~~~~~~~ 266 (814)
T 3mkq_A 249 DGTLKIWNSSTYKVEKTL 266 (814)
T ss_dssp TSCEEEEETTTCSEEEEE
T ss_pred CCeEEEEECCCCcEEEEe
Confidence 88999999987755443
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=218.80 Aligned_cols=225 Identities=13% Similarity=0.106 Sum_probs=191.9
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++.+..++.+..++...+. ......+..|...+.++.++|+++. +++++.||.|++||+++++.+..+
T Consensus 107 ~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~-----l~~~~~dg~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 107 PDGCTLIVGGEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPDSKV-----CFSCCSDGNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp TTSSEEEEEESSSEEEEEECCCC----EEEEEEECSSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEcCCCcEEEEECCCCC--cceeeecccCCCceEEEEECCCCCE-----EEEEeCCCcEEEEeCCCCceeeee
Confidence 444567777778999999887663 2244557788999999999999998 889999999999999999998888
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
..|. +.+++|+|++++|++++.||.|++||+++++. ...+ .+...+.+++|+|+++++++++.++.|++||++
T Consensus 180 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ----LQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----EEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce----Eeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 7764 56699999999999999999999999998764 3333 367889999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
+++.. .+..+... +.+++|+|+++++++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++ |.|
T Consensus 255 ~~~~~-~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 255 KPDKY-QLHLHESC--VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp SSCEE-EECCCSSC--EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred CCCeE-EEcCCccc--eeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeE
Confidence 88754 44555544 999999999999999999999999999999888655 4788899999999999999987 889
Q ss_pred EEEcC
Q 024185 245 SFWIP 249 (271)
Q Consensus 245 ~iw~~ 249 (271)
++|++
T Consensus 331 ~iw~~ 335 (337)
T 1gxr_A 331 TVYEV 335 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=231.44 Aligned_cols=227 Identities=10% Similarity=0.076 Sum_probs=187.8
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEec-CCchhhhhhhhhhccCceEEEEEecCc-------ceeEEEe
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSA-CLQLMIALCLVLLTTALEYGIFVLMLA-------SFQGILR 89 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~ 89 (271)
..++.+.+++.............+.+|.+.|.+++|+| ++.. |++++.||.|++||+.++ +.+..+.
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~-----l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~ 128 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNV-----IASGSEDCTVMVWEIPDGGLVLPLREPVITLE 128 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTE-----EEEEETTSEEEEEECCTTCCSSCBCSCSEEEE
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCE-----EEEEeCCCeEEEEEccCCCCccccCCceEEec
Confidence 55788888886443221122334778999999999999 7887 889999999999999987 5677787
Q ss_pred cCC--cceEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcceEEEe--cCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 90 LRG--RPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLV--GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 90 ~~~--~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
+|. +.+++|+|++ ++|++++.|+.|++||+++++. ...+ .+|...|.+++|+|++++|++++.|+.|++||
T Consensus 129 ~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 204 (402)
T 2aq5_A 129 GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA----VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIE 204 (402)
T ss_dssp CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE----EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEE
T ss_pred CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc----cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEe
Confidence 774 6679999998 6999999999999999998775 5566 78999999999999999999999999999999
Q ss_pred CCCCeEEEEe-ecCCCCCceeeEEECCCCCEEEEe---cCCCcEEEEEcCCcee-EEEe-cCCcceeEEEEEecCCcEEE
Q 024185 165 AYGGEKRCGF-SLEPSPNTNTEATFTPDGQYVVSG---SGDGTLHAWNINTRNE-VACW-NGNIGVVACLKWAPRRAMFV 238 (271)
Q Consensus 165 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~s~~~~~l~ 238 (271)
+++++.+..+ ..+.. ..+.++.|+|+++++++| +.|+.|++||+++++. +... ..|...+.+++|+|++++|+
T Consensus 205 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 205 PRKGTVVAEKDRPHEG-TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp TTTTEEEEEEECSSCS-SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEE
T ss_pred CCCCceeeeeccCCCC-CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEE
Confidence 9999998888 55544 247889999999999999 7899999999988664 3332 24677899999999999886
Q ss_pred -EeC--CeEEEEcCCCCCC
Q 024185 239 -AAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 239 -~~~--~~v~iw~~~~~~~ 254 (271)
+++ +.|++||+.+++.
T Consensus 284 ~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 284 LCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp EEETTCSCEEEEEECSSTT
T ss_pred EEEcCCCeEEEEEecCCCc
Confidence 453 7899999998773
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-33 Score=241.49 Aligned_cols=226 Identities=13% Similarity=0.149 Sum_probs=187.0
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++.+..++.+.+++...+ ...+.+.+|.+.|.+++|+|+++. +++++.|++|++||..........
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~----~~~~~~~~h~~~v~~~~~s~~~~~-----l~s~s~D~~i~iwd~~~~~~~~~~ 510 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAG----VSTRRFVGHTKDVLSVAFSLDNRQ-----IVSASRDRTIKLWNTLGECKYTIS 510 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECTTSSC-----EEEEETTSCEEEECTTSCEEEEEC
T ss_pred CCCCEEEEEeCCCcEEEEECCCC----cceeEEeCCCCCEEEEEEeCCCCE-----EEEEeCCCEEEEEECCCCcceeec
Confidence 34455666677999999998777 445668899999999999999998 899999999999998654433322
Q ss_pred ---ecC--CcceEEEcCCC--CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEE
Q 024185 89 ---RLR--GRPTVAFDQQG--LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 161 (271)
Q Consensus 89 ---~~~--~~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 161 (271)
.+| .+.+++|+|++ ..+++++.|+.|++||+++.+. ...+.+|.+.|.+++|+|++++|++++.|+.|+
T Consensus 511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~----~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~ 586 (694)
T 3dm0_A 511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL----RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVL 586 (694)
T ss_dssp SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEEETTSBCE
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE----EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 233 36779999987 5899999999999999998775 667889999999999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc-------------------
Q 024185 162 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI------------------- 222 (271)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------- 222 (271)
+||+++++.+..+..+. .+.+++|+|++.++++++ ++.|++||+++++.+..+..+.
T Consensus 587 iwd~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (694)
T 3dm0_A 587 LWDLAEGKKLYSLEANS---VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV 662 (694)
T ss_dssp EEETTTTEEEECCBCSS---CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CC
T ss_pred EEECCCCceEEEecCCC---cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCcee
Confidence 99999999887776433 399999999999887776 4569999999999887764321
Q ss_pred ceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 223 GVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
..+++++|+|+|++|++|+ |.|++|++..
T Consensus 663 ~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 663 IYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp CCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 1378999999999999998 8999999853
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=231.92 Aligned_cols=239 Identities=10% Similarity=0.159 Sum_probs=189.3
Q ss_pred ecceeEEeeecceeeEEEEeeccce-------eeEEEEEccccc------------ceEEeeEEecCC--chhhhhhhhh
Q 024185 9 PITQALLFARQNIILILLESLCGIY-------QCMIIEFFATSK------------GIRRGLFLSACL--QLMIALCLVL 67 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------------~~v~~~~~s~~~--~~~~~~~l~s 67 (271)
|..+.|+.+..++.+.+++...+.. .......+.+|. +.|.++.|+|++ .. +++
T Consensus 38 ~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~-----l~s 112 (447)
T 3dw8_B 38 HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQ-----FLL 112 (447)
T ss_dssp SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSE-----EEE
T ss_pred CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcce-----EEE
Confidence 5556677778899999999876531 122456678888 889999999998 56 789
Q ss_pred hccCceEEEEEecCccee---------------------------------------EEE-ecC--CcceEEEcCCCCEE
Q 024185 68 LTTALEYGIFVLMLASFQ---------------------------------------GIL-RLR--GRPTVAFDQQGLVF 105 (271)
Q Consensus 68 ~~~dg~i~iwd~~~~~~~---------------------------------------~~~-~~~--~~~~~~~~~~~~~l 105 (271)
++.|+.|++||+.+++.. ..+ .+| .+.+++|+|++++|
T Consensus 113 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 192 (447)
T 3dw8_B 113 STNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETY 192 (447)
T ss_dssp EECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEE
T ss_pred eCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEE
Confidence 999999999999765432 122 344 36779999999999
Q ss_pred EEEecCCeEEEEeCCCCCCCcceEE-----EecCCccceEEEEEcCCC-cEEEEEecCCeEEEEECCCCeE----EEEee
Q 024185 106 AVAMEAGAIKLFDSRSYDKGPFDTF-----LVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEK----RCGFS 175 (271)
Q Consensus 106 ~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~----~~~~~ 175 (271)
++| .|+.|++||+++... ..... .+.+|...|.+++|+|++ ++|++++.||.|++||+++++. ...+.
T Consensus 193 ~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 270 (447)
T 3dw8_B 193 LSA-DDLRINLWHLEITDR-SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE 270 (447)
T ss_dssp EEE-CSSEEEEEETTEEEE-EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC
T ss_pred EEe-CCCeEEEEECCCCCc-eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec
Confidence 998 799999999984332 01111 256789999999999998 9999999999999999999886 67777
Q ss_pred cCCCC----------CceeeEEECCCCCEEEEecCCCcEEEEEcCC-ceeEEEecCCcce---------------eEEEE
Q 024185 176 LEPSP----------NTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGV---------------VACLK 229 (271)
Q Consensus 176 ~~~~~----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~---------------v~~~~ 229 (271)
.+..+ ..+.+++|+|++++|++++. +.|++||+++ ++++..+.+|... +..++
T Consensus 271 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 349 (447)
T 3dw8_B 271 EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECC 349 (447)
T ss_dssp CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEE
T ss_pred cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEE
Confidence 66541 14999999999999999999 9999999997 8888888888642 23499
Q ss_pred EecCCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 230 WAPRRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 230 ~s~~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
|+|++++|++++ +.|++||+.+++..
T Consensus 350 ~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 350 WNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp ECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 999999999998 88999999988754
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=225.62 Aligned_cols=231 Identities=9% Similarity=0.083 Sum_probs=191.5
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEc--ccccceEEeeEEecC----CchhhhhhhhhhccCceEEEEEecCcce
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFF--ATSKGIRRGLFLSAC----LQLMIALCLVLLTTALEYGIFVLMLASF 84 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~----~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 84 (271)
...++.+..++.+..++...+..... +..+ ..|...+.+++|+|+ +.+ +++++.||.|++||+++++.
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----l~~~~~dg~i~v~d~~~~~~ 107 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQGEIRL-LQSYVDADADENFYTCAWTYDSNTSHPL-----LAVAGSRGIIRIINPITMQC 107 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGGGCEEE-EEEEECSCTTCCEEEEEEEECTTTCCEE-----EEEEETTCEEEEECTTTCCE
T ss_pred CceEEEECCCCEEEEEEcCCCcEEEe-eeeccccCCCCcEEEEEeccCCCCCCCE-----EEEecCCCEEEEEEchhceE
Confidence 34466667788889998876533222 2222 236688999999999 556 88999999999999999999
Q ss_pred eEEEecCC--cceEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcceEEEe---cCCccceEEEEEcCCCcEEEEEecCC
Q 024185 85 QGILRLRG--RPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV---GGDTAEVCDIKFSNDGKSMLLTTTNN 158 (271)
Q Consensus 85 ~~~~~~~~--~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d~ 158 (271)
+..+..|. +.+++|+| ++++|++++.||.|++||+++++. ...+ .+|...|.+++|+|++++|++++.|+
T Consensus 108 ~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 183 (366)
T 3k26_A 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL----VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH 183 (366)
T ss_dssp EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE----EEEECSTTSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE----EEEecccccccCceeEEEECCCCCEEEEecCCC
Confidence 99998775 66799999 899999999999999999998764 4444 68999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEeec----------------------------CCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC
Q 024185 159 NIYVLDAYGGEKRCGFSL----------------------------EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210 (271)
Q Consensus 159 ~i~~~d~~~~~~~~~~~~----------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 210 (271)
.|++||+++++....+.. +.. .|.+++|+ ++++++++.||.|++||++
T Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~~~~~d~~i~~wd~~ 259 (366)
T 3k26_A 184 SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN--YVDCVRWL--GDLILSKSCENAIVCWKPG 259 (366)
T ss_dssp CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS--CCCEEEEE--TTEEEEECSSSEEEEEEES
T ss_pred CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc--eEEEEEEc--CCEEEEEecCCEEEEEeCC
Confidence 999999998765443332 444 48899998 7799999999999999998
Q ss_pred Ccee--------------EEEecCCcceeEEEEEecC--CcEEEEeC--CeEEEEcCCCCCCC
Q 024185 211 TRNE--------------VACWNGNIGVVACLKWAPR--RAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 211 ~~~~--------------~~~~~~~~~~v~~~~~s~~--~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
+++. +..+..|...|.+++|+|+ +++|++++ |.|++||+.+++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 260 KMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH 322 (366)
T ss_dssp STTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred CccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence 7644 7788899999999999999 99999998 88999999987643
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=223.83 Aligned_cols=229 Identities=15% Similarity=0.102 Sum_probs=182.1
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
..++.+..++.+..++.... ..........+...+.+++|+|+++. +++++.|+.|++||+ +++.+..+..|
T Consensus 132 ~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~-----l~~~~~d~~i~i~d~-~~~~~~~~~~h 203 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSRQM-----LATGDSTGRLLLLGL-DGHEIFKEKLH 203 (383)
T ss_dssp EEEEEEETTTEEEEEETTSC--EEEEEECCCCSSCCEEEEEEETTTTE-----EEEEETTSEEEEEET-TSCEEEEEECS
T ss_pred CEEEEEeCCCEEEEEECCCC--ceEEEeccCCCCCCeEEEEECCCCCE-----EEEECCCCCEEEEEC-CCCEEEEeccC
Confidence 45556677899999887643 22222333445588999999999998 889999999999999 57778888777
Q ss_pred C--cceEEEcCCCC-EEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCC
Q 024185 92 G--RPTVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 92 ~--~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~ 167 (271)
. +.+++|+|+++ ++++++.|+.|++||+++.+........+ +|...|.+++|+| ++++|++++.|+.|++||+++
T Consensus 204 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 204 KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence 4 66799999998 99999999999999998744211223333 6899999999999 999999999999999999998
Q ss_pred CeEEEEeecCCCC---------------CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecC--CcceeEEEEE
Q 024185 168 GEKRCGFSLEPSP---------------NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG--NIGVVACLKW 230 (271)
Q Consensus 168 ~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~ 230 (271)
++....+..+... ..+..++|+|++++ +++.||.|++||+.+++.+..+.+ |...+..++|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~ 360 (383)
T 3ei3_B 283 WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF 360 (383)
T ss_dssp TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEE
T ss_pred CccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEE
Confidence 8777666644321 12334666667666 778899999999999999999976 4577888899
Q ss_pred ecCCcEEEEeC-CeEEEEcCCC
Q 024185 231 APRRAMFVAAS-SVLSFWIPNP 251 (271)
Q Consensus 231 s~~~~~l~~~~-~~v~iw~~~~ 251 (271)
+|++++|++++ +.|++||+++
T Consensus 361 s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 361 SPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp CTTSSEEEEEETTEEEEEECC-
T ss_pred ecCccEEEEecCCcEEEEecCC
Confidence 99999999998 8999999875
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=216.97 Aligned_cols=233 Identities=15% Similarity=0.179 Sum_probs=186.6
Q ss_pred ecceeEEe-eecceeeEEEEeecccee-eEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 9 PITQALLF-ARQNIILILLESLCGIYQ-CMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 9 ~~~~~l~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
|....+++ +..|+.+.+|+....... ....+.+.+|...|.++.|+|++++ +++++.|+.|++|+........
T Consensus 48 p~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~-----l~s~~~d~~i~~~~~~~~~~~~ 122 (340)
T 4aow_A 48 PQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF-----ALSGSWDGTLRLWDLTTGTTTR 122 (340)
T ss_dssp TTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSE-----EEEEETTSEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCE-----EEEEcccccceEEeecccceee
Confidence 44344554 566899999987654322 2345678999999999999999998 8999999999999999888777
Q ss_pred EEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC--cEEEEEecCCeEEE
Q 024185 87 ILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG--KSMLLTTTNNNIYV 162 (271)
Q Consensus 87 ~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~~ 162 (271)
....+. .....+++++++|++++.|+.+++||...... ......+|...+.+++|++++ .++++++.|+.|++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i 199 (340)
T 4aow_A 123 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK---YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199 (340)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE---EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred eecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce---EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEE
Confidence 766553 45588999999999999999999999876542 344567889999999999864 56789999999999
Q ss_pred EECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 163 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
||+++++.+..+..|... |.+++|+|++++|++|+.||.|++||+++.+.+..+..+ ..|.++.|+|++.+++++.
T Consensus 200 ~d~~~~~~~~~~~~h~~~--v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d 276 (340)
T 4aow_A 200 WNLANCKLKTNHIGHTGY--LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATG 276 (340)
T ss_dssp EETTTTEEEEEECCCSSC--EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEET
T ss_pred EECCCCceeeEecCCCCc--EEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCC
Confidence 999999999999888766 999999999999999999999999999988877766543 3466666666665555544
Q ss_pred CeEEEEcCCCC
Q 024185 242 SVLSFWIPNPS 252 (271)
Q Consensus 242 ~~v~iw~~~~~ 252 (271)
+.|++||++++
T Consensus 277 ~~i~iwd~~~~ 287 (340)
T 4aow_A 277 PSIKIWDLEGK 287 (340)
T ss_dssp TEEEEEETTTT
T ss_pred CEEEEEECCCC
Confidence 66666666543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=227.52 Aligned_cols=206 Identities=14% Similarity=0.225 Sum_probs=177.9
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec--CcceeEEEecCC--cceEEEcCC--CCEEEEEecCC
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM--LASFQGILRLRG--RPTVAFDQQ--GLVFAVAMEAG 112 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~--~~~~~~~~~--~~~l~~~~~d~ 112 (271)
..+.+|.+.|.+++|+|++++ |++++.||.|++||++ +++.+..+..|. +.+++|+++ +++|++++.||
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~-----l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKR-----LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSE-----EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred EEecCCcccEEEEEEcCCCCE-----EEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 447889999999999999998 8899999999999998 556777787774 567999987 89999999999
Q ss_pred eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC--CcEEEEEecCCeEEEEECCCCeE--EEEeecCCCCCceeeEEE
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEK--RCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~ 188 (271)
.|++||+.+++. .....+..|...|.+++|+|+ ++++++++.|+.|++||+++++. ...+..+.. .+.+++|
T Consensus 80 ~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~--~v~~~~~ 155 (379)
T 3jrp_A 80 KVLIWKEENGRW--SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI--GVNSASW 155 (379)
T ss_dssp CEEEEEEETTEE--EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT--CEEEEEE
T ss_pred EEEEEEcCCCce--eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC--ceEEEEE
Confidence 999999998752 235667789999999999999 99999999999999999988743 334445554 4999999
Q ss_pred CC-------------CCCEEEEecCCCcEEEEEcCCce----eEEEecCCcceeEEEEEecC---CcEEEEeC--CeEEE
Q 024185 189 TP-------------DGQYVVSGSGDGTLHAWNINTRN----EVACWNGNIGVVACLKWAPR---RAMFVAAS--SVLSF 246 (271)
Q Consensus 189 ~~-------------~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~---~~~l~~~~--~~v~i 246 (271)
+| +++++++++.||.|++||+++++ ....+.+|...|.+++|+|+ +++|++++ +.|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~i 235 (379)
T 3jrp_A 156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 235 (379)
T ss_dssp CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence 99 69999999999999999998754 45677889999999999999 89999997 88999
Q ss_pred EcCCCCC
Q 024185 247 WIPNPSS 253 (271)
Q Consensus 247 w~~~~~~ 253 (271)
||+.++.
T Consensus 236 wd~~~~~ 242 (379)
T 3jrp_A 236 WTQDNEQ 242 (379)
T ss_dssp EEESSTT
T ss_pred EeCCCCC
Confidence 9998864
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=225.25 Aligned_cols=211 Identities=12% Similarity=0.091 Sum_probs=179.3
Q ss_pred EEEEEcccccceEEeeEEecCC-chhhhhhhhhhccCceEEEEEecCcceeEEEe--cCC--cceEEEcC-CCCEEEEEe
Q 024185 36 MIIEFFATSKGIRRGLFLSACL-QLMIALCLVLLTTALEYGIFVLMLASFQGILR--LRG--RPTVAFDQ-QGLVFAVAM 109 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~--~~~~~~~~-~~~~l~~~~ 109 (271)
...+.+.+|.+.|.+++|+|++ ++ +++++.||.|++||+.+++....+. +|. +.+++|+| ++++|++++
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~-----l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTT-----VAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTE-----EEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCE-----EEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 3455678999999999999999 66 8899999999999999888777775 353 56799999 779999999
Q ss_pred cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEEC
Q 024185 110 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 189 (271)
Q Consensus 110 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~ 189 (271)
.|+.|++||+++... .......+|...|.+++|+|++++|++++.|+.|++||+ +++.+..+..|... |.+++|+
T Consensus 139 ~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~--v~~~~~~ 213 (383)
T 3ei3_B 139 IRGATTLRDFSGSVI--QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAK--VTHAEFN 213 (383)
T ss_dssp TTTEEEEEETTSCEE--EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSC--EEEEEEC
T ss_pred CCCEEEEEECCCCce--EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCc--EEEEEEC
Confidence 999999999986332 111112344588999999999999999999999999998 57778888877765 9999999
Q ss_pred CCCC-EEEEecCCCcEEEEEcCC----ceeEEEecCCcceeEEEEEec-CCcEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 190 PDGQ-YVVSGSGDGTLHAWNINT----RNEVACWNGNIGVVACLKWAP-RRAMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 190 ~~~~-~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
|+++ ++++++.|+.|++||+++ +..+..+ +|...|.+++|+| ++++|++++ +.|++||+++++....
T Consensus 214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 288 (383)
T 3ei3_B 214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ 288 (383)
T ss_dssp SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 9999 999999999999999997 6666666 6899999999999 999999998 8899999998776543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-32 Score=225.82 Aligned_cols=228 Identities=13% Similarity=0.139 Sum_probs=197.2
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
+.++.+..++.+..++...+ ..+..+.+|.+.|.++.|+|++ . +++++.||+|++||+++++.+..+.+|
T Consensus 133 ~~l~sgs~dg~i~vwd~~~~----~~~~~~~~h~~~V~~l~~~~~~-~-----l~s~s~dg~i~vwd~~~~~~~~~~~~h 202 (464)
T 3v7d_B 133 NYVITGADDKMIRVYDSINK----KFLLQLSGHDGGVWALKYAHGG-I-----LVSGSTDRTVRVWDIKKGCCTHVFEGH 202 (464)
T ss_dssp TEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECSTT-E-----EEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CEEEEEcCCCcEEEEECCCC----cEEEEEeCCCcCEEEEEEcCCC-E-----EEEEeCCCCEEEEECCCCcEEEEECCC
Confidence 45566677999999998777 5566688999999999999988 4 789999999999999999999999877
Q ss_pred C--cceEEEc--CCCCEEEEEecCCeEEEEeCCCCCCCcc-------------------eEEEecCCccceEEEEEcCCC
Q 024185 92 G--RPTVAFD--QQGLVFAVAMEAGAIKLFDSRSYDKGPF-------------------DTFLVGGDTAEVCDIKFSNDG 148 (271)
Q Consensus 92 ~--~~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~-------------------~~~~~~~~~~~v~~~~~s~~~ 148 (271)
. +.+++|+ ++++++++++.||.|++||+.+.+.... ....+.+|...+.++ ++++
T Consensus 203 ~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~ 280 (464)
T 3v7d_B 203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG 280 (464)
T ss_dssp SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET
T ss_pred CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC
Confidence 4 5667887 6789999999999999999987654111 144567888888877 6778
Q ss_pred cEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEE
Q 024185 149 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACL 228 (271)
Q Consensus 149 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 228 (271)
+++++++.|+.|++||+++++.+..+..|... +.+++|+|+++++++|+.||.|++||+++++.+..+.+|...|.++
T Consensus 281 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 358 (464)
T 3v7d_B 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR--IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL 358 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCCCC--EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 99999999999999999999999999887765 9999999999999999999999999999999999999999999999
Q ss_pred EEecCCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 229 KWAPRRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 229 ~~s~~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
+|+ +.+|++++ |.|++||+.++...
T Consensus 359 ~~~--~~~l~s~s~dg~v~vwd~~~~~~~ 385 (464)
T 3v7d_B 359 RLS--DKFLVSAAADGSIRGWDANDYSRK 385 (464)
T ss_dssp EEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEc--CCEEEEEeCCCcEEEEECCCCcee
Confidence 997 57888887 88999999886543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-32 Score=220.94 Aligned_cols=238 Identities=11% Similarity=0.143 Sum_probs=188.5
Q ss_pred cceeEEeeecceeeEEEEeeccceeeEEEE---------EcccccceEEeeEEec-CCchhhhhhhhhhccCceEEEEEe
Q 024185 10 ITQALLFARQNIILILLESLCGIYQCMIIE---------FFATSKGIRRGLFLSA-CLQLMIALCLVLLTTALEYGIFVL 79 (271)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~s~-~~~~~~~~~l~s~~~dg~i~iwd~ 79 (271)
..+.++.+..++.+..++...+........ ...+|...+.++.|+| ++.. +++++.||.|++||+
T Consensus 55 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----l~s~~~d~~i~iwd~ 129 (408)
T 4a11_B 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM-----FTSSSFDKTLKVWDT 129 (408)
T ss_dssp TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC-----EEEEETTSEEEEEET
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE-----EEEEeCCCeEEEeeC
Confidence 445666677799999999876543222110 0135889999999999 5556 789999999999999
Q ss_pred cCcceeEEEecC-CcceEEEcCC---CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc-EEEEE
Q 024185 80 MLASFQGILRLR-GRPTVAFDQQ---GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLT 154 (271)
Q Consensus 80 ~~~~~~~~~~~~-~~~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~ 154 (271)
++++....+... .+..+.++|. +.++++++.++.|++||+++++. ...+.+|...|.+++|+|+++ .++++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~ll~~~ 205 (408)
T 4a11_B 130 NTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC----SHILQGHRQEILAVSWSPRYDYILATA 205 (408)
T ss_dssp TTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC----CEEECCCCSCEEEEEECSSCTTEEEEE
T ss_pred CCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce----eeeecCCCCcEEEEEECCCCCcEEEEE
Confidence 999988888754 3566888884 45999999999999999998876 566778999999999999998 58899
Q ss_pred ecCCeEEEEECCCCe-EEEEe---------------ecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc------
Q 024185 155 TTNNNIYVLDAYGGE-KRCGF---------------SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR------ 212 (271)
Q Consensus 155 ~~d~~i~~~d~~~~~-~~~~~---------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------ 212 (271)
+.||.|++||+++++ ....+ ..+. ..+.+++|+|+++++++++.||.|++||+.++
T Consensus 206 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 283 (408)
T 4a11_B 206 SADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHN--GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVN 283 (408)
T ss_dssp ETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCC
T ss_pred cCCCcEEEEECCCCCcccccccccccccceeecccccccc--CceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceec
Confidence 999999999998765 33333 2233 45999999999999999999999999998654
Q ss_pred -----------------------------------------eeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcC
Q 024185 213 -----------------------------------------NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 213 -----------------------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
+.+..+.+|...|.+++|+|++++|++++ |.|++||+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 363 (408)
T 4a11_B 284 YGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVP 363 (408)
T ss_dssp CCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred cccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence 34566778999999999999999999997 88999999
Q ss_pred CCCCCCcCC
Q 024185 250 NPSSNSTDE 258 (271)
Q Consensus 250 ~~~~~~~~~ 258 (271)
++++.....
T Consensus 364 ~~~~~~~~~ 372 (408)
T 4a11_B 364 SLYEPVPDD 372 (408)
T ss_dssp CC-------
T ss_pred CCCCccCCC
Confidence 998776543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=226.27 Aligned_cols=209 Identities=8% Similarity=-0.043 Sum_probs=180.7
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc--eeEEEecCC--cceEEEcCCCCEEEEEecCCeEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS--FQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKL 116 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i 116 (271)
+..|.+.+.+++|+|++++ +++++.|+.|++||+++++ .+..+..|. +.+++|+|++++|++++.||.|++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~-----l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~v 78 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQ-----IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV 78 (372)
T ss_dssp EESCSSCCCEEEECTTSSE-----EEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred ecccCCCeEEEEECCCCCE-----EEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEE
Confidence 5568899999999999998 8899999999999999987 788887774 567999999999999999999999
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE---EEEe-ecCCCCCceeeEEECCCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK---RCGF-SLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~-~~~~~~~~v~~~~~~~~~ 192 (271)
||+++++. .....+..|...|.+++|+|++++|++++.|+.|++||++.++. ...+ ..|. ..+.+++|+|++
T Consensus 79 wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~ 154 (372)
T 1k8k_C 79 WTLKGRTW--KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR--STVLSLDWHPNS 154 (372)
T ss_dssp EEEETTEE--EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC--SCEEEEEECTTS
T ss_pred EECCCCee--eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccC--CCeeEEEEcCCC
Confidence 99987653 33445577899999999999999999999999999999987763 2222 3334 449999999999
Q ss_pred CEEEEecCCCcEEEEEc------------------CCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 193 QYVVSGSGDGTLHAWNI------------------NTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
+++++++.||.|++||+ ..++.+..+.+|...|.+++|+|++++|++++ +.|++||++++
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999999999999995 46788899999999999999999999999997 88999999888
Q ss_pred CCCcCC
Q 024185 253 SNSTDE 258 (271)
Q Consensus 253 ~~~~~~ 258 (271)
+.....
T Consensus 235 ~~~~~~ 240 (372)
T 1k8k_C 235 MAVATL 240 (372)
T ss_dssp TEEEEE
T ss_pred ceeEEE
Confidence 765444
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=227.08 Aligned_cols=227 Identities=16% Similarity=0.177 Sum_probs=185.1
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeE------EecCCchhhhhhhhhhccCceEEEEEecCcc-e
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLF------LSACLQLMIALCLVLLTTALEYGIFVLMLAS-F 84 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~ 84 (271)
..++.+..++.+..++...+.. ....+.+|.+.+.++. |+|+++. +++++.||.|++||+++++ .
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~s~~~~~-----l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPEM---PVYSVKGHKEIINAIDGIGGLGIGEGAPE-----IVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCSS---CSEEECCCSSCEEEEEEESGGGCC-CCCE-----EEEEETTSCEEEECTTSCSSC
T ss_pred ceEEEecCCCeEEEEeCCCCCc---cEEEEEecccceEEEeeccccccCCCccE-----EEEEeCCCeEEEEeCCCCCCc
Confidence 5566677789999998876631 2344788999999994 5788888 8899999999999999887 6
Q ss_pred eEEEecC------CcceEE----EcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC---CCcEE
Q 024185 85 QGILRLR------GRPTVA----FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN---DGKSM 151 (271)
Q Consensus 85 ~~~~~~~------~~~~~~----~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l 151 (271)
+..+..+ .+.+++ |+|+++++++++.||.|++||+++++. .....|...+.+++|+| +++++
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~l 227 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----RWETNIKNGVCSLEFDRKDISMNKL 227 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-----EEEEECSSCEEEEEESCSSSSCCEE
T ss_pred ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-----eeecCCCCceEEEEcCCCCCCCCEE
Confidence 6777543 244466 789999999999999999999998763 33356788999999999 99999
Q ss_pred EEEecCCeEEEEECCCCeEEEEee-----cCCCCCceeeEEECCCCC-EEEEecCCCcEEEEEcCCc-------------
Q 024185 152 LLTTTNNNIYVLDAYGGEKRCGFS-----LEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTR------------- 212 (271)
Q Consensus 152 ~~~~~d~~i~~~d~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~------------- 212 (271)
++++.||.|++||+++++....+. .|... +.+++|+|+++ ++++++.||.|++||++++
T Consensus 228 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~ 305 (357)
T 3i2n_A 228 VATSLEGKFHVFDMRTQHPTKGFASVSEKAHKST--VWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEM 305 (357)
T ss_dssp EEEESTTEEEEEEEEEEETTTEEEEEEEECCSSC--EEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCC
T ss_pred EEECCCCeEEEEeCcCCCcccceeeeccCCCcCC--EEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcc
Confidence 999999999999998876655443 55554 99999999998 8999999999999999754
Q ss_pred ------eeEEEecCCcceeEEEEEecCCcEEE-EeC--CeEEEEcCCCCC
Q 024185 213 ------NEVACWNGNIGVVACLKWAPRRAMFV-AAS--SVLSFWIPNPSS 253 (271)
Q Consensus 213 ------~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~--~~v~iw~~~~~~ 253 (271)
+.+..+.+|...|.+++|+|++++|+ +++ +.|++||+.+.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 306 GVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 46777889999999999999999888 676 889999998754
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=221.65 Aligned_cols=212 Identities=13% Similarity=0.100 Sum_probs=184.5
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeE
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAI 114 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i 114 (271)
....+.+|.+.|.+++|+|++++ +++++.||.|++||+.+++.+..+..|. +.+++|+|++++|++++.||.|
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~-----l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 98 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDL-----LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSI 98 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCE-----EEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCE-----EEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 34457899999999999999998 8899999999999999999999998775 5679999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC-----CeEEEEECCCCe-----------EEEEeecCC
Q 024185 115 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGE-----------KRCGFSLEP 178 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~-----------~~~~~~~~~ 178 (271)
++||+.+++. ...+. +...+.+++|+|+++++++++.+ +.|++||++.++ ....+..+.
T Consensus 99 ~iwd~~~~~~----~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 99 KLWDVSNGQC----VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp EEEETTTCCE----EEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred EEEECCCCcE----EEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 9999998875 44444 77899999999999999999998 999999987653 233344444
Q ss_pred CCCceeeEEECCCCCEEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 179 SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 179 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
....+.+++|+|+++++++++.||.|++||+++ ++.+..+..|...|.+++|+|++++|++++ +.|++||+++++..
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 433599999999999999999999999999998 788889999999999999999999999987 88999999987765
Q ss_pred cCC
Q 024185 256 TDE 258 (271)
Q Consensus 256 ~~~ 258 (271)
...
T Consensus 254 ~~~ 256 (369)
T 3zwl_B 254 KKY 256 (369)
T ss_dssp EEE
T ss_pred eee
Confidence 443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=229.86 Aligned_cols=242 Identities=14% Similarity=0.230 Sum_probs=189.7
Q ss_pred eEEeeecceeeEEEEeeccc------eeeEEEEEcccccceEEeeEEecCCc-hhhhhhhhhhccCceEEEEEecCcce-
Q 024185 13 ALLFARQNIILILLESLCGI------YQCMIIEFFATSKGIRRGLFLSACLQ-LMIALCLVLLTTALEYGIFVLMLASF- 84 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~- 84 (271)
.++.+..++.+..++..... ........+.+|...+.+++|+|++. . |++++.||.|++||+.++..
T Consensus 143 ~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~-----l~s~~~dg~i~vwd~~~~~~~ 217 (430)
T 2xyi_A 143 VIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGY-----LLSASDDHTICLWDINATPKE 217 (430)
T ss_dssp EEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTE-----EEEECTTSCEEEEETTSCCBG
T ss_pred EEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCe-----EEEEeCCCeEEEEeCCCCCCC
Confidence 34445668889998876510 00123345778999999999999998 5 78999999999999987321
Q ss_pred ------eEEEecCC--cceEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc-EEEEE
Q 024185 85 ------QGILRLRG--RPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLT 154 (271)
Q Consensus 85 ------~~~~~~~~--~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~ 154 (271)
...+..|. +.+++|+| ++.+|++++.||.|++||+++... ......+..|...|.+++|+|+++ +++++
T Consensus 218 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg 296 (430)
T 2xyi_A 218 HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATG 296 (430)
T ss_dssp GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS-SSCSEEEECCSSCEEEEEECSSCTTEEEEE
T ss_pred CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC-CcceeEeecCCCCeEEEEeCCCCCCEEEEE
Confidence 34455554 67799999 678999999999999999997631 011444568999999999999887 68899
Q ss_pred ecCCeEEEEECCC-CeEEEEeecCCCCCceeeEEECCCCC-EEEEecCCCcEEEEEcCC--------------ceeEEEe
Q 024185 155 TTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINT--------------RNEVACW 218 (271)
Q Consensus 155 ~~d~~i~~~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~--------------~~~~~~~ 218 (271)
+.||.|++||+++ ++.+..+..|... +.+++|+|+++ ++++++.||.|++||+.. .+.+..+
T Consensus 297 ~~dg~v~vwd~~~~~~~~~~~~~h~~~--v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 374 (430)
T 2xyi_A 297 SADKTVALWDLRNLKLKLHSFESHKDE--IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 374 (430)
T ss_dssp ETTSEEEEEETTCTTSCSEEEECCSSC--EEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC
T ss_pred eCCCeEEEEeCCCCCCCeEEeecCCCC--EEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEc
Confidence 9999999999998 5667778777765 99999999985 689999999999999987 3677788
Q ss_pred cCCcceeEEEEEecCCc-EEEEeC--CeEEEEcCCCCCCCcCCCCCC
Q 024185 219 NGNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNPSSNSTDESTDP 262 (271)
Q Consensus 219 ~~~~~~v~~~~~s~~~~-~l~~~~--~~v~iw~~~~~~~~~~~~~~~ 262 (271)
.+|...|.+++|+|+++ ++++++ |.|++|++.......+....+
T Consensus 375 ~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 421 (430)
T 2xyi_A 375 GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIP 421 (430)
T ss_dssp CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHHCC------
T ss_pred CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccccCCCccCC
Confidence 89999999999999999 788877 889999998765544444333
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=224.39 Aligned_cols=226 Identities=15% Similarity=0.180 Sum_probs=191.2
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcc-cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFA-TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
+.++.+..++.+..++...+.. ...+. .|...+.+++|+|+++. +++++.||.|++||+++++.+..+..
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~----~~~~~~~~~~~v~~v~~s~~~~~-----l~~~~~dg~i~iwd~~~~~~~~~~~~ 174 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSV----SALAETDESTYVASVKWSHDGSF-----LSVGLGNGLVDIYDVESQTKLRTMAG 174 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCE----EEEEECCTTCCEEEEEECTTSSE-----EEEEETTSCEEEEETTTCCEEEEECC
T ss_pred CCEEEEECCCeEEEeeCCCCcE----eEeeecCCCCCEEEEEECCCCCE-----EEEECCCCeEEEEECcCCeEEEEecC
Confidence 5577777899999999877732 22233 37889999999999998 88999999999999999999999988
Q ss_pred CCc--ceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC
Q 024185 91 RGR--PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 168 (271)
Q Consensus 91 ~~~--~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 168 (271)
|.. .+++| +++++++++.||.|++||++.... ....+.+|.+.|.+++|+|++++|++++.|+.|++||++++
T Consensus 175 ~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 249 (401)
T 4aez_A 175 HQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH---QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS 249 (401)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS
T ss_pred CCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcc---eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC
Confidence 764 44666 678999999999999999985442 25567789999999999999999999999999999999999
Q ss_pred eEEEEeecCCCCCceeeEEECCCCC-EEEEec--CCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEE--eC--
Q 024185 169 EKRCGFSLEPSPNTNTEATFTPDGQ-YVVSGS--GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA--AS-- 241 (271)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~-- 241 (271)
+....+..+... +.+++|+|++. ++++++ .|+.|++||+++++.+..+. +...|.+++|+|+++++++ |+
T Consensus 250 ~~~~~~~~~~~~--v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d 326 (401)
T 4aez_A 250 IPKFTKTNHNAA--VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPD 326 (401)
T ss_dssp SEEEEECCCSSC--CCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTT
T ss_pred CccEEecCCcce--EEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCC
Confidence 988888777665 99999999765 555654 79999999999999999886 5677999999999999988 43
Q ss_pred CeEEEEcCCCCCC
Q 024185 242 SVLSFWIPNPSSN 254 (271)
Q Consensus 242 ~~v~iw~~~~~~~ 254 (271)
|.|++||+.+++.
T Consensus 327 g~i~v~~~~~~~~ 339 (401)
T 4aez_A 327 NNLSIWSYSSSGL 339 (401)
T ss_dssp CEEEEEEEETTEE
T ss_pred CcEEEEecCCccc
Confidence 8899999988543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=235.83 Aligned_cols=206 Identities=11% Similarity=0.100 Sum_probs=167.1
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE--ecC--CcceEEEcC-CCCEEEEEecCCeEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL--RLR--GRPTVAFDQ-QGLVFAVAMEAGAIK 115 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~--~~~~~~~~~-~~~~l~~~~~d~~i~ 115 (271)
..+|...|++++|+|....+ ||+|+.||.|++||+.+++....+ .+| .+.+++|+| ++++|++++.||+|+
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~----lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPST----VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp EEECSSCEEEEEECSSCTTC----EEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred CCCCCCCEEEEEEeCCCCCE----EEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 45678889999999965432 779999999999999877654443 455 477899998 688999999999999
Q ss_pred EEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC-E
Q 024185 116 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-Y 194 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 194 (271)
+||+++... ........+...+.+++|+|++++|++|+.||.|++||++. +.+..+..|... |.+++|+|+++ +
T Consensus 191 iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~--v~~v~~~p~~~~~ 265 (435)
T 4e54_B 191 LQDFKGNIL--RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKK--VTHVALNPCCDWF 265 (435)
T ss_dssp EEETTSCEE--EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSC--EEEEEECTTCSSE
T ss_pred EeeccCCce--eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccce--EEeeeecCCCceE
Confidence 999986542 11111223345678999999999999999999999999864 556677777765 99999999976 7
Q ss_pred EEEecCCCcEEEEEcCCceeEEE---ecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 195 VVSGSGDGTLHAWNINTRNEVAC---WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
+++++.|+.|++||+++.+.... ..+|...|++++|+|+|++|++++ +.|++||+.++...
T Consensus 266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCP 331 (435)
T ss_dssp EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSE
T ss_pred EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccc
Confidence 88999999999999988765433 357899999999999999999998 88999999887654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=223.92 Aligned_cols=228 Identities=13% Similarity=0.199 Sum_probs=198.6
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEec--CCchhhhhhhhhhccCceEEEEEecCcce-----
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSA--CLQLMIALCLVLLTTALEYGIFVLMLASF----- 84 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----- 84 (271)
..++.+..++.+..++...+ .....+.+|.+.+.++.+++ ++.. +++++.||.|++||++++..
T Consensus 174 ~~l~s~s~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~~-----l~s~s~d~~i~vwd~~~~~~~~~~~ 244 (464)
T 3v7d_B 174 GILVSGSTDRTVRVWDIKKG----CCTHVFEGHNSTVRCLDIVEYKNIKY-----IVTGSRDNTLHVWKLPKESSVPDHG 244 (464)
T ss_dssp TEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEEESSSCEE-----EEEEETTSCEEEEECCCCCCC----
T ss_pred CEEEEEeCCCCEEEEECCCC----cEEEEECCCCCccEEEEEecCCCCCE-----EEEEcCCCcEEEeeCCCCccccccc
Confidence 36667788999999998777 45566889999999999984 6677 88999999999999987653
Q ss_pred ------------------eEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC
Q 024185 85 ------------------QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN 146 (271)
Q Consensus 85 ------------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 146 (271)
...+.+|...+.+++++++++++++.||.|++||+.+++. ...+.+|...|.+++|+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~ 320 (464)
T 3v7d_B 245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC----LYILSGHTDRIYSTIYDH 320 (464)
T ss_dssp --CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEEET
T ss_pred ccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE----EEEecCCCCCEEEEEEcC
Confidence 4456677777778889999999999999999999998775 667789999999999999
Q ss_pred CCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeE
Q 024185 147 DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVA 226 (271)
Q Consensus 147 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 226 (271)
+++++++++.|+.|++||+++++.+..+..|... +.+++|+ ++++++++.||.|++||+.+++...... +...+.
T Consensus 321 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~--v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~ 395 (464)
T 3v7d_B 321 ERKRCISASMDTTIRIWDLENGELMYTLQGHTAL--VGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSA 395 (464)
T ss_dssp TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCC
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCc--EEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCcc
Confidence 9999999999999999999999999999888766 9899997 5799999999999999999988777664 566788
Q ss_pred EEEEecCCcEEEEeC-CeEEEEcCCCCCCCcC
Q 024185 227 CLKWAPRRAMFVAAS-SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 227 ~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~~~ 257 (271)
.++|+|+++++++++ +.|++||++++++...
T Consensus 396 ~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 396 ITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp EEEEEECSSEEEEEETTEEEEEETTTCCEEES
T ss_pred EEEEEeCCCEEEEecCCeEEEEECCCCcEEeh
Confidence 899999999999998 9999999999987754
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-33 Score=228.56 Aligned_cols=235 Identities=12% Similarity=0.118 Sum_probs=187.2
Q ss_pred cceeEEeeecceeeEEEEeec---cceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec---Ccc
Q 024185 10 ITQALLFARQNIILILLESLC---GIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM---LAS 83 (271)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~ 83 (271)
..+.++.+..++.+.+|+... +... .....+ .|.+.|.+++|+|+++. +++++.||.|++||++ +++
T Consensus 75 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~-~h~~~v~~~~~~~~~~~-----l~s~s~dg~i~vwd~~~~~~~~ 147 (437)
T 3gre_A 75 ETPYLITGSDQGVIKIWNLKEIIVGEVY-SSSLTY-DCSSTVTQITMIPNFDA-----FAVSSKDGQIIVLKVNHYQQES 147 (437)
T ss_dssp SSCEEEEEETTSEEEEEEHHHHHTTCCC-SCSEEE-ECSSCEEEEEECTTSSE-----EEEEETTSEEEEEEEEEEEETT
T ss_pred CCCEEEEecCCceEEEeECcccccCccc-ceeeec-cCCCCEEEEEEeCCCCE-----EEEEeCCCEEEEEEeccccCCc
Confidence 445666777899999999766 3211 001112 48899999999999998 8899999999999995 555
Q ss_pred eeEEEecCC--------------cceEE--EcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecC--CccceEEEEEc
Q 024185 84 FQGILRLRG--------------RPTVA--FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG--DTAEVCDIKFS 145 (271)
Q Consensus 84 ~~~~~~~~~--------------~~~~~--~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~v~~~~~s 145 (271)
....+..+. +.++. +++++++|++++.|+.|++||+++++. ...+.+ |...|.+++|+
T Consensus 148 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~h~~~v~~~~~s 223 (437)
T 3gre_A 148 EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER----LQIIENSPRHGAVSSICID 223 (437)
T ss_dssp EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE----EEEEECCGGGCCEEEEEEC
T ss_pred eeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee----eEEEccCCCCCceEEEEEC
Confidence 554443332 22233 567899999999999999999998775 555556 88999999999
Q ss_pred CCCcEEEEEecCCeEEEEECCCCeEEEEee-cCCCCCceeeEEEC----CCCCEEEEecCCCcEEEEEcCCceeEEEecC
Q 024185 146 NDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFT----PDGQYVVSGSGDGTLHAWNINTRNEVACWNG 220 (271)
Q Consensus 146 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~v~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 220 (271)
|++++|++++.||.|++||+++++.+..+. .+.. .|.+++|+ |+++++++++.||.|++||+++++.+..+.+
T Consensus 224 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 301 (437)
T 3gre_A 224 EECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA--PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFIN 301 (437)
T ss_dssp TTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE--EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEES
T ss_pred CCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC--ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEc
Confidence 999999999999999999999999988876 3443 48999555 5688999999999999999999998887754
Q ss_pred --------------------------CcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCC
Q 024185 221 --------------------------NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 221 --------------------------~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~ 258 (271)
|...|++++|+ ++++|++++ +.|++||+.+++.....
T Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 302 SDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp SSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred CCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence 45568889999 778999998 89999999988765443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=228.51 Aligned_cols=208 Identities=14% Similarity=0.128 Sum_probs=170.5
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-----------eeEEEecCC--------------cceEE
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-----------FQGILRLRG--------------RPTVA 97 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~--------------~~~~~ 97 (271)
.+.+.|.+++|+|++++ |++|+.||.|++||+.+++ ....+.+|. +.+++
T Consensus 26 ~~~~~V~~v~~s~~g~~-----la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 26 AEADIISTVEFNHSGEL-----LATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp CGGGSEEEEEECSSSSE-----EEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred cccCcEEEEEECCCCCE-----EEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE
Confidence 35789999999999998 8999999999999998876 477777776 67799
Q ss_pred EcCCC--CEEEEEecCCeEEEEeCCCCCCCc----------------------c--------------eEEEecCCccce
Q 024185 98 FDQQG--LVFAVAMEAGAIKLFDSRSYDKGP----------------------F--------------DTFLVGGDTAEV 139 (271)
Q Consensus 98 ~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~----------------------~--------------~~~~~~~~~~~v 139 (271)
|+|++ .+|++++.|+.|++||+.+++... + ......+|...|
T Consensus 101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 99998 799999999999999987532100 0 001136799999
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEECCC-CeEEEE-------eecCCCCCceeeEEECCCC-CEEEEecCCCcEEEEEcC
Q 024185 140 CDIKFSNDGKSMLLTTTNNNIYVLDAYG-GEKRCG-------FSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNIN 210 (271)
Q Consensus 140 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~-~~~~~~-------~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~ 210 (271)
.+++|+|++++|+++ .|+.|++||+++ ++.... +..|.. .|.+++|+|++ +++++|+.||.|++||++
T Consensus 181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTE--VITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCC--CEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCc--ceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence 999999999999998 799999999984 444442 334544 49999999998 999999999999999999
Q ss_pred Ccee----EEEecCCcc------------eeEEEEEecCCcEEEEeC-CeEEEEcCCC-CCCCcCC
Q 024185 211 TRNE----VACWNGNIG------------VVACLKWAPRRAMFVAAS-SVLSFWIPNP-SSNSTDE 258 (271)
Q Consensus 211 ~~~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~-~~v~iw~~~~-~~~~~~~ 258 (271)
+++. +..+.+|.. .|.+++|+|++++|++++ +.|++||+++ +++....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~ 323 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETY 323 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCE
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCcccccee
Confidence 9887 788888876 899999999999999998 9999999987 6655444
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=240.65 Aligned_cols=233 Identities=10% Similarity=0.126 Sum_probs=195.5
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecC--CchhhhhhhhhhccCceEEEEEecCcc--e
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSAC--LQLMIALCLVLLTTALEYGIFVLMLAS--F 84 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~--~ 84 (271)
|..+.++.+..++.+..++...+. ......+.+|.+.|.++.|+|+ ++. +++++.||.|++||+++++ .
T Consensus 19 ~dg~~latg~~dg~I~vwd~~~~~--~~~~~~l~~h~~~V~~l~~s~~~~~~~-----l~s~s~Dg~I~vwd~~~~~~~~ 91 (753)
T 3jro_A 19 YYGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFGTI-----LASCSYDGKVLIWKEENGRWSQ 91 (753)
T ss_dssp SSSCCEEEEETTTEEEEEEEETTE--EEEEEEECCCSSCEEEEEECCTTSCSE-----EEEEETTSCEEEEEEETTEEEE
T ss_pred CCCCeEEEEECCCcEEEEecCCCC--CccceeccCCcCceEEEEecCCCCCCE-----EEEEeCCCeEEEEECCCCcccc
Confidence 445667777789999999877432 2445668899999999999988 787 8899999999999999887 5
Q ss_pred eEEEecC--CcceEEEcCC--CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-------------C
Q 024185 85 QGILRLR--GRPTVAFDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-------------D 147 (271)
Q Consensus 85 ~~~~~~~--~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------------~ 147 (271)
...+..| .+.+++|+|+ ++.+++++.||.|++||+.++.. .....+.+|...|.+++|+| +
T Consensus 92 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~--~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d 169 (753)
T 3jro_A 92 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 169 (753)
T ss_dssp EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC--CCCEEEECCSSCEEEEEECCCC---------CGG
T ss_pred cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC--cceeEeecCCCceEEEEecCcccccccccccCCC
Confidence 6666666 4677999999 99999999999999999988754 23455678999999999999 5
Q ss_pred CcEEEEEecCCeEEEEECCCC----eEEEEeecCCCCCceeeEEECCC---CCEEEEecCCCcEEEEEcCCce-----eE
Q 024185 148 GKSMLLTTTNNNIYVLDAYGG----EKRCGFSLEPSPNTNTEATFTPD---GQYVVSGSGDGTLHAWNINTRN-----EV 215 (271)
Q Consensus 148 ~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~-----~~ 215 (271)
++++++++.||.|++||++++ +....+..|... |.+++|+|+ ++++++++.||.|++||+++++ ..
T Consensus 170 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~--V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 247 (753)
T 3jro_A 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW--VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL 247 (753)
T ss_dssp GCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC--EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCB
T ss_pred CCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc--EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEE
Confidence 899999999999999999877 455666666655 999999999 8999999999999999998864 23
Q ss_pred EEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 216 ACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 216 ~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
.....|...|++++|+|+|+++++++ |.|++|++..+
T Consensus 248 ~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 248 LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred eccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 33456888999999999999999987 88999999854
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=220.30 Aligned_cols=236 Identities=14% Similarity=0.126 Sum_probs=193.4
Q ss_pred ecce-eEEeeecceeeEEEEe----eccce--eeEEEEEccc----------ccceEEeeEEecCCchhhhhhhhhhccC
Q 024185 9 PITQ-ALLFARQNIILILLES----LCGIY--QCMIIEFFAT----------SKGIRRGLFLSACLQLMIALCLVLLTTA 71 (271)
Q Consensus 9 ~~~~-~l~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~----------~~~~v~~~~~s~~~~~~~~~~l~s~~~d 71 (271)
|... .++.+..++.+..++. ..+.. +......+.. |.+.+.+++|+|++++ |++++.|
T Consensus 55 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~~~~d 129 (425)
T 1r5m_A 55 PLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS-----IVTGVEN 129 (425)
T ss_dssp SSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE-----EEEEETT
T ss_pred CCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE-----EEEEeCC
Confidence 3344 5667777899999988 55531 0001222333 6779999999999998 8899999
Q ss_pred ceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCc-----------------------
Q 024185 72 LEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP----------------------- 126 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----------------------- 126 (271)
|.|++|| .+++.+..+..|. +.+++|+|++++|++++.|+.|++||+.+++...
T Consensus 130 g~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (425)
T 1r5m_A 130 GELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSL 208 (425)
T ss_dssp SCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCC
T ss_pred CeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcce
Confidence 9999999 6778888887774 5669999999999999999999999997654200
Q ss_pred -----------------------------ceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecC
Q 024185 127 -----------------------------FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 177 (271)
Q Consensus 127 -----------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 177 (271)
.....+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+
T Consensus 209 ~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 288 (425)
T 1r5m_A 209 GVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH 288 (425)
T ss_dssp BSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC
T ss_pred eeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC
Confidence 001234568889999999999999999999999999999999888888777
Q ss_pred CCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 178 PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 178 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
... +.+++|+|++ ++++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++++ +.|++||+.+++
T Consensus 289 ~~~--i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 289 SQS--IVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp SSC--EEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred Ccc--EEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 665 9999999999 999999999999999999999999999999999999999999999997 889999998765
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=214.73 Aligned_cols=211 Identities=15% Similarity=0.190 Sum_probs=178.9
Q ss_pred EEEEcccccceEEeeEEecCC-chhhhhhhhhhccCceEEEEEecCcc-----eeEEEecCC--cceEEEcCCCCEEEEE
Q 024185 37 IIEFFATSKGIRRGLFLSACL-QLMIALCLVLLTTALEYGIFVLMLAS-----FQGILRLRG--RPTVAFDQQGLVFAVA 108 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~--~~~~~~~~~~~~l~~~ 108 (271)
....+++|.+.|.+++|+|++ ++ |+||+.|++|++||+.+.+ +...+.+|. +.+++|+|++++|+++
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~-----l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDM-----ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG 104 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTE-----EEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEECCccCCEEEEEEeCCCCCE-----EEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 345689999999999999985 56 8899999999999997653 455667664 6779999999999999
Q ss_pred ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEE-eecCCCCCceeeEE
Q 024185 109 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG-FSLEPSPNTNTEAT 187 (271)
Q Consensus 109 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~v~~~~ 187 (271)
+.|+.|++|+...... ......+...+....+++++++|++++.|+.+++||......... ...+.. .+..++
T Consensus 105 ~~d~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~--~v~~~~ 178 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTT----TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE--WVSCVR 178 (340)
T ss_dssp ETTSEEEEEETTTTEE----EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSS--CEEEEE
T ss_pred cccccceEEeecccce----eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccC--cccceE
Confidence 9999999999987764 555567778899999999999999999999999999876654332 333443 488899
Q ss_pred ECCCC--CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCC
Q 024185 188 FTPDG--QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 188 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~ 258 (271)
|++++ .++++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++++ +.|++||+++.+.....
T Consensus 179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 253 (340)
T 4aow_A 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 253 (340)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee
Confidence 98774 5788999999999999999999999999999999999999999999998 89999999987655443
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=231.40 Aligned_cols=232 Identities=12% Similarity=0.073 Sum_probs=190.2
Q ss_pred ceeEEeeecceeeEEEEeeccce-----eeEEEEEcccccceEEeeEEecC-CchhhhhhhhhhccCceEEEEEecCcce
Q 024185 11 TQALLFARQNIILILLESLCGIY-----QCMIIEFFATSKGIRRGLFLSAC-LQLMIALCLVLLTTALEYGIFVLMLASF 84 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 84 (271)
...++.+..++.+..++...+.. .......+..|...+.+++|+|+ +.. +++++.||.|++||+++++.
T Consensus 126 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----l~~~~~dg~v~iwd~~~~~~ 200 (416)
T 2pm9_A 126 DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHV-----FASAGSSNFASIWDLKAKKE 200 (416)
T ss_dssp TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTE-----EEEESSSSCEEEEETTTTEE
T ss_pred CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcE-----EEEEcCCCCEEEEECCCCCc
Confidence 44556666788999988776531 11122234678899999999999 555 77999999999999999998
Q ss_pred eEEEecC--------CcceEEEcCCC-CEEEEEecCC---eEEEEeCCCCCCCcceEEEec-CCccceEEEEEcC-CCcE
Q 024185 85 QGILRLR--------GRPTVAFDQQG-LVFAVAMEAG---AIKLFDSRSYDKGPFDTFLVG-GDTAEVCDIKFSN-DGKS 150 (271)
Q Consensus 85 ~~~~~~~--------~~~~~~~~~~~-~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~ 150 (271)
+..+..+ .+.+++|+|++ .++++++.|+ .|++||+++... ....+. +|...|.+++|+| ++++
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~ 277 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT---PLQTLNQGHQKGILSLDWCHQDEHL 277 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS---CSBCCCSCCSSCEEEEEECSSCSSC
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC---CcEEeecCccCceeEEEeCCCCCCe
Confidence 8888654 36679999997 6899999998 999999998642 134455 7999999999999 9999
Q ss_pred EEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCC-CEEEEecCCCcEEEEEcCCceeEEEec----------
Q 024185 151 MLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRNEVACWN---------- 219 (271)
Q Consensus 151 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---------- 219 (271)
|++++.|+.|++||+++++.+..+..|... +.+++|+|++ +++++++.||.|++||+.+++......
T Consensus 278 l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~--v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 355 (416)
T 2pm9_A 278 LLSSGRDNTVLLWNPESAEQLSQFPARGNW--CFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESE 355 (416)
T ss_dssp EEEEESSSEEEEECSSSCCEEEEEECSSSC--CCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----------
T ss_pred EEEEeCCCCEEEeeCCCCccceeecCCCCc--eEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCc
Confidence 999999999999999999999999888766 8999999999 899999999999999998765422211
Q ss_pred -------------------------CCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 220 -------------------------GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 220 -------------------------~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
.|..++.+++|+|+|++|++++ +.|++|++.+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 356 TDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -----------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 1566788999999999999998 88999999864
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=210.85 Aligned_cols=231 Identities=13% Similarity=0.106 Sum_probs=189.3
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|....++.+..++.+..++....... .....+..|...+.++.+ +++. +++++.||.|++|| .++....+
T Consensus 69 ~~~~~l~~~~~dg~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~--~~~~-----l~~~~~d~~i~~~d--~~~~~~~~ 138 (313)
T 3odt_A 69 SEKELLLFGGKDTMINGVPLFATSGE-DPLYTLIGHQGNVCSLSF--QDGV-----VISGSWDKTAKVWK--EGSLVYNL 138 (313)
T ss_dssp TTTTEEEEEETTSCEEEEETTCCTTS-CC-CEECCCSSCEEEEEE--ETTE-----EEEEETTSEEEEEE--TTEEEEEE
T ss_pred CCCCEEEEecCCCeEEEEEeeecCCC-CcccchhhcccCEEEEEe--cCCE-----EEEEeCCCCEEEEc--CCcEEEec
Confidence 44566777778888888876654221 223446789999999998 4555 78999999999999 66777777
Q ss_pred ecCC--cceEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecC-CccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 89 RLRG--RPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG-DTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 89 ~~~~--~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
..|. +..++|+| +++++++++.||.|++||... . ...+.. |...+.+++|+|++. +++++.|+.|++||
T Consensus 139 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~----~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d 211 (313)
T 3odt_A 139 QAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--V----IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVD 211 (313)
T ss_dssp ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--E----EEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEE
T ss_pred ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--e----EEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEE
Confidence 7664 55588877 899999999999999999332 2 334445 889999999999998 99999999999999
Q ss_pred CCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-Ce
Q 024185 165 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SV 243 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~ 243 (271)
+++++.+..+..|... +.+++|+|++ .+++++.||.|++||+++++.+..+..|...|.+++|+|++++++++. +.
T Consensus 212 ~~~~~~~~~~~~~~~~--i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~ 288 (313)
T 3odt_A 212 MHTGDVLRTYEGHESF--VYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNL 288 (313)
T ss_dssp TTTCCEEEEEECCSSC--EEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSC
T ss_pred CCchhhhhhhhcCCce--EEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCc
Confidence 9999999999887766 9999999999 588999999999999999999999999999999999999999666555 89
Q ss_pred EEEEcCCCCCCCcCCC
Q 024185 244 LSFWIPNPSSNSTDES 259 (271)
Q Consensus 244 v~iw~~~~~~~~~~~~ 259 (271)
|++||+++++.....+
T Consensus 289 i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 289 VRIFSQEKSRWASEDE 304 (313)
T ss_dssp EEEEESCGGGCCC---
T ss_pred EEEEeCCCCceeehhh
Confidence 9999999887766554
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=222.62 Aligned_cols=199 Identities=11% Similarity=0.069 Sum_probs=168.8
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec--CcceeEEEe--cC--CcceEEEcCCCCEEEEEecCCeEEEE
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM--LASFQGILR--LR--GRPTVAFDQQGLVFAVAMEAGAIKLF 117 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~--~~--~~~~~~~~~~~~~l~~~~~d~~i~i~ 117 (271)
|.+.|.+++|+|+++.+ +++++.||.|++||+. +++.+..+. .+ .+.+++|+|++++|++++.+|.+++|
T Consensus 101 ~~~~v~~~~~s~d~~~l----~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRL----IACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp CCCCEEEEEECTTSSEE----EEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCceEEEEEcCCCCEE----EEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 34479999999999983 2688999999999999 888888875 33 35679999999999999999999999
Q ss_pred eCCCCCCCcceEEEecCCccceEEEEEcCC---CcEEEEEecCCeEEEEECCCCeEEEE-eecCCCCCceeeEEECCCCC
Q 024185 118 DSRSYDKGPFDTFLVGGDTAEVCDIKFSND---GKSMLLTTTNNNIYVLDAYGGEKRCG-FSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 118 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~ 193 (271)
++.+.+........+.+|...|.+++|+|+ +++|++++.|+.|++||+++++.+.. +..|... |.+++|+ +++
T Consensus 177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~--v~~~~~s-d~~ 253 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF--VSSICCG-KDY 253 (450)
T ss_dssp ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC--EEEEEEC-STT
T ss_pred ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc--eEEEEEC-CCC
Confidence 998776421012245678899999999999 99999999999999999999988777 4456554 9999999 999
Q ss_pred EEEEecCCCcEEEEEcCCceeEEEecCC-------------------------cceeEEEEEecCCcEEEEeC---CeEE
Q 024185 194 YVVSGSGDGTLHAWNINTRNEVACWNGN-------------------------IGVVACLKWAPRRAMFVAAS---SVLS 245 (271)
Q Consensus 194 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------------------~~~v~~~~~s~~~~~l~~~~---~~v~ 245 (271)
+|++++.|+.|++||+++++.+..+..+ ...|.+++|+|++++|++++ +.|+
T Consensus 254 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~ 333 (450)
T 2vdu_B 254 LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCII 333 (450)
T ss_dssp EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEE
Confidence 9999999999999999999988887532 34689999999999988875 7799
Q ss_pred EEcC
Q 024185 246 FWIP 249 (271)
Q Consensus 246 iw~~ 249 (271)
+|++
T Consensus 334 iw~~ 337 (450)
T 2vdu_B 334 ILEM 337 (450)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9999
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=207.69 Aligned_cols=172 Identities=11% Similarity=0.065 Sum_probs=135.8
Q ss_pred cCceEEEEEe-cCcceeEEEecC--CcceEEEcC---CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc---cceE
Q 024185 70 TALEYGIFVL-MLASFQGILRLR--GRPTVAFDQ---QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT---AEVC 140 (271)
Q Consensus 70 ~dg~i~iwd~-~~~~~~~~~~~~--~~~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~v~ 140 (271)
.|+.|++|++ .+++.+..+..| .+..++|++ ++.+|++++.|++|++||+++++. ...+.+|. ..+.
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~----l~tL~g~~~~v~~v~ 230 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL----LKKMHIDDSYQASVC 230 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE----EEEEECCC---CCCE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE----EEEEcCCCcceeeeE
Confidence 3889999999 457777776655 466789988 779999999999999999999986 55555543 4677
Q ss_pred EEEEcCCCcEE------------EEEecCCeEEEEECCCCeEEEEee-----cCCCCCceeeEEECCCCCEEEEecCCCc
Q 024185 141 DIKFSNDGKSM------------LLTTTNNNIYVLDAYGGEKRCGFS-----LEPSPNTNTEATFTPDGQYVVSGSGDGT 203 (271)
Q Consensus 141 ~~~~s~~~~~l------------~~~~~d~~i~~~d~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 203 (271)
+++|+|+|+++ ++|+.|+++++||..+++.+..+. +|.. .+.+. +.++.++++++.|++
T Consensus 231 ~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~--~~lsg--~~sg~~lASgS~DgT 306 (356)
T 2w18_A 231 HKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG--RFLEG--DVKDHCAAAILTSGT 306 (356)
T ss_dssp EEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC--CEEEE--EEETTEEEEEETTSC
T ss_pred EEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc--eeEcc--ccCCCEEEEEcCCCc
Confidence 88999999986 567789999999999999877653 2222 24333 334789999999999
Q ss_pred EEEEEcCCceeEEEecCCcceeE-EEEEecCCcEEEEeC--CeEEEEcC
Q 024185 204 LHAWNINTRNEVACWNGNIGVVA-CLKWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 204 i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
|+|||+.+++++.++.+|...+. .++|+|||++|++|+ ++|+|||+
T Consensus 307 IkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 307 IAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999999999999999987655 689999999999998 88999985
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=246.16 Aligned_cols=230 Identities=16% Similarity=0.184 Sum_probs=201.0
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++.+..++.+..|+...+ ..+..+.+|.+.|.+++|+|++++ +++++.||.|++||+.+++.+..+
T Consensus 625 ~~~~~l~s~~~d~~i~vw~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~-----l~s~~~d~~v~vwd~~~~~~~~~~ 695 (1249)
T 3sfz_A 625 QDGQRIASCGADKTLQVFKAETG----EKLLDIKAHEDEVLCCAFSSDDSY-----IATCSADKKVKIWDSATGKLVHTY 695 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSE-----EEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCC----CEEEEeccCCCCEEEEEEecCCCE-----EEEEeCCCeEEEEECCCCceEEEE
Confidence 44556666778899999998777 445568899999999999999998 889999999999999999999999
Q ss_pred ecCC--cceEEEcC--CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 89 RLRG--RPTVAFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 89 ~~~~--~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
.+|. +.+++|+| ++.++++++.|+.|++||+.+++. ...+.+|.+.|.+++|+|+++++++++.||.|++||
T Consensus 696 ~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd 771 (1249)
T 3sfz_A 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC----RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771 (1249)
T ss_dssp ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE----EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEE
T ss_pred cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch----hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEe
Confidence 8875 56799999 456899999999999999998875 667789999999999999999999999999999999
Q ss_pred CCCCeEEEEeecC-----------------------------------------------------CCCCceeeEEECCC
Q 024185 165 AYGGEKRCGFSLE-----------------------------------------------------PSPNTNTEATFTPD 191 (271)
Q Consensus 165 ~~~~~~~~~~~~~-----------------------------------------------------~~~~~v~~~~~~~~ 191 (271)
+++++....+... .+...+.+++|+|+
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~ 851 (1249)
T 3sfz_A 772 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 851 (1249)
T ss_dssp GGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSS
T ss_pred CCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCC
Confidence 9887655443210 11235788999999
Q ss_pred CCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 192 GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 192 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
++++++++.||.|++||+.++..+..+.+|...|.+++|+|++++|++++ +.+++|++.+
T Consensus 852 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 852 DHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp TTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred CCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 99999999999999999999999999999999999999999999999998 8899999764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-31 Score=209.11 Aligned_cols=227 Identities=15% Similarity=0.145 Sum_probs=190.1
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc---cee
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA---SFQ 85 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~ 85 (271)
|..+.++.+..++.+..++...+ .....+..|.+.+.+++|+|+++. +++++.||.+++|++... +..
T Consensus 27 ~~~~~l~s~~~dg~v~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~-----l~~~~~dg~i~~~~~~~~~~~~~~ 97 (313)
T 3odt_A 27 VDDSKVASVSRDGTVRLWSKDDQ----WLGTVVYTGQGFLNSVCYDSEKEL-----LLFGGKDTMINGVPLFATSGEDPL 97 (313)
T ss_dssp EETTEEEEEETTSEEEEEEESSS----EEEEEEEECSSCEEEEEEETTTTE-----EEEEETTSCEEEEETTCCTTSCC-
T ss_pred cCCCEEEEEEcCCcEEEEECCCC----EEEEEeecCCccEEEEEECCCCCE-----EEEecCCCeEEEEEeeecCCCCcc
Confidence 66677888888999999998666 444557788999999999999998 889999999999998654 456
Q ss_pred EEEecCCcc--eEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEE
Q 024185 86 GILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYV 162 (271)
Q Consensus 86 ~~~~~~~~~--~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~ 162 (271)
..+..|... +++| +++++++++.||.|++|| ..+. ...+..|...+.+++|+| +++++++++.|+.|++
T Consensus 98 ~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 169 (313)
T 3odt_A 98 YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSL----VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL 169 (313)
T ss_dssp CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEE----EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcE----EEecccCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence 667777544 4666 788999999999999999 3332 556778999999999998 8999999999999999
Q ss_pred EECCCCeEEEEeec-CCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 163 LDAYGGEKRCGFSL-EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 163 ~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
|| .++....+.. +.. .+.+++|+|+++ +++++.||.|++||+++++.+..+.+|...|.+++|+|++. |++++
T Consensus 170 ~d--~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~ 243 (313)
T 3odt_A 170 WQ--NDKVIKTFSGIHND--VVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCG 243 (313)
T ss_dssp EE--TTEEEEEECSSCSS--CEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEE
T ss_pred Ee--cCceEEEEeccCcc--cEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEe
Confidence 99 4566666665 444 499999999998 89999999999999999999999999999999999999995 55555
Q ss_pred --CeEEEEcCCCCCCCcCC
Q 024185 242 --SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 242 --~~v~iw~~~~~~~~~~~ 258 (271)
+.|++||+++++.....
T Consensus 244 ~dg~v~iwd~~~~~~~~~~ 262 (313)
T 3odt_A 244 EDRTVRIWSKENGSLKQVI 262 (313)
T ss_dssp TTSEEEEECTTTCCEEEEE
T ss_pred cCCEEEEEECCCCceeEEE
Confidence 89999999998765544
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=221.97 Aligned_cols=234 Identities=11% Similarity=0.039 Sum_probs=171.7
Q ss_pred eEEeeecceeeEEEEeeccceee-EEEEEcccccceEEeeEEec--------CCchhhhhhhhhhccCceEEEEEecCcc
Q 024185 13 ALLFARQNIILILLESLCGIYQC-MIIEFFATSKGIRRGLFLSA--------CLQLMIALCLVLLTTALEYGIFVLMLAS 83 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~--------~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 83 (271)
.++.+..++.+.+++...+.... ..+..+.+|.+.|.+++|+| ++++ |++++.|++|++||++++.
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~-----las~s~D~tv~~Wd~~~~~ 177 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQV-----IASVGDDCTLIIWRLTDEG 177 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEE-----EEEEETTSEEEEEEEETTE
T ss_pred EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCE-----EEEEECCCeEEEEECCCCc
Confidence 34455668999999987764322 23455789999999999998 6777 8999999999999999887
Q ss_pred eeEEEecCC--cceEEEcCCCC-EEEEEecCCeEEEEeCCCCCCCcc---------------------eEEEecCCccce
Q 024185 84 FQGILRLRG--RPTVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPF---------------------DTFLVGGDTAEV 139 (271)
Q Consensus 84 ~~~~~~~~~--~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~---------------------~~~~~~~~~~~v 139 (271)
.+..+..|. +.+++|+|++. +|++++.|++|++||+++++.... ......+|...+
T Consensus 178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v 257 (393)
T 4gq1_A 178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL 257 (393)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence 776666553 56699999874 899999999999999987653110 011224677889
Q ss_pred EEEEEc-CCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC----------------CceeeEEECC--CCCEEEEecC
Q 024185 140 CDIKFS-NDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP----------------NTNTEATFTP--DGQYVVSGSG 200 (271)
Q Consensus 140 ~~~~~s-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----------------~~v~~~~~~~--~~~~l~~~~~ 200 (271)
.++.|+ ||++.+++++.|+++++||+..++....+..+... .......++| ++.++++|+.
T Consensus 258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~ 337 (393)
T 4gq1_A 258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ 337 (393)
T ss_dssp SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence 999987 79999999999999999999887665554433221 1122234443 4457778899
Q ss_pred CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCC
Q 024185 201 DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP 251 (271)
Q Consensus 201 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~ 251 (271)
||.|++||+.+++.......|..+|.+++|+|||++||+++ +.+.+|.+..
T Consensus 338 Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~g 389 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLMG 389 (393)
T ss_dssp TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEGG
T ss_pred CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEeC
Confidence 99999999999999888888999999999999999999998 7788887644
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-32 Score=216.17 Aligned_cols=211 Identities=10% Similarity=0.145 Sum_probs=176.2
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc----ceeEEEecCC--cceEEEcC--CCCEEEEEec
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA----SFQGILRLRG--RPTVAFDQ--QGLVFAVAME 110 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~--~~~~~~~~--~~~~l~~~~~ 110 (271)
+.+.+|.+.|.+++|+|++++ |++++.||.|++||++++ +....+..|. +.+++|+| ++++|++++.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~-----l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~ 79 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRH-----VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY 79 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSE-----EEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ccCcccccceeEEEEcCCCCE-----EEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC
Confidence 347899999999999999998 889999999999999876 3556666664 67799999 6999999999
Q ss_pred CCeEEEEeCCCCCCCc-----ceEEEecCCccceEEEEEcCC--CcEEEEEecCCeEEEEECCCCeEEEEeec-------
Q 024185 111 AGAIKLFDSRSYDKGP-----FDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEKRCGFSL------- 176 (271)
Q Consensus 111 d~~i~i~d~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~------- 176 (271)
||.|++||+++++... .....+.+|...|.+++|+|+ ++++++++.|+.|++||+++++.+..+..
T Consensus 80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence 9999999998764311 235567789999999999999 99999999999999999988765443321
Q ss_pred ----CCCCCceeeEEECCC---CCEEEEecCCCcEEEEEcCCcee--EEEecCCcceeEEEEEecCC----cEEEEeC--
Q 024185 177 ----EPSPNTNTEATFTPD---GQYVVSGSGDGTLHAWNINTRNE--VACWNGNIGVVACLKWAPRR----AMFVAAS-- 241 (271)
Q Consensus 177 ----~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~----~~l~~~~-- 241 (271)
......+.+++|+|+ ++++++++.++.+.+|+...++. +..+.+|...|.+++|+|++ ++|++++
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 122245899999997 99999999999998888877765 67788999999999999998 8899987
Q ss_pred CeEEEEcCCCCCC
Q 024185 242 SVLSFWIPNPSSN 254 (271)
Q Consensus 242 ~~v~iw~~~~~~~ 254 (271)
+.|++||++.+..
T Consensus 240 g~i~iwd~~~~~~ 252 (351)
T 3f3f_A 240 GRIRIFKITEKLS 252 (351)
T ss_dssp SCEEEEEEEECC-
T ss_pred CeEEEEeCCCCcC
Confidence 8899999987643
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=230.38 Aligned_cols=234 Identities=12% Similarity=0.125 Sum_probs=196.5
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccce-EEeeEEec--CCchhhhhhhhhhccCceEEEEEecCc------
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGI-RRGLFLSA--CLQLMIALCLVLLTTALEYGIFVLMLA------ 82 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~--~~~~~~~~~l~s~~~dg~i~iwd~~~~------ 82 (271)
+.++++. ++.+..++...+.........+.+|.+. |.+++|+| ++++ +++++.||.|++||+.++
T Consensus 31 ~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~-----l~s~~~dg~v~vw~~~~~~~~~~~ 104 (615)
T 1pgu_A 31 NAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY-----LCSGDESGKVIVWGWTFDKESNSV 104 (615)
T ss_dssp TEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCE-----EEEEETTSEEEEEEEEEEGGGTEE
T ss_pred CEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCE-----EEEecCCCEEEEEeCCCCcccccc
Confidence 3444444 7788888876552111334558899999 99999999 9998 889999999999999855
Q ss_pred --ceeEEEecC--CcceEEEcCCCCEEEEEecC----CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc-EEEE
Q 024185 83 --SFQGILRLR--GRPTVAFDQQGLVFAVAMEA----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLL 153 (271)
Q Consensus 83 --~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~ 153 (271)
+....+..+ .+.+++|+|++++|++++.+ +.|++|| .++. ...+.+|...|.+++|+|+++ .+++
T Consensus 105 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~ 178 (615)
T 1pgu_A 105 EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNS----LGEVSGHSQRINACHLKQSRPMRSMT 178 (615)
T ss_dssp EEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCE----EEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred cccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCc----ceeeecCCccEEEEEECCCCCcEEEE
Confidence 566666655 46679999999999999887 6899998 3333 566789999999999999998 7999
Q ss_pred EecCCeEEEEECCCCeEEEEeecCCCC-CceeeEEECCC-CCEEEEecCCCcEEEEEcCCceeEEEe-c---CCcceeEE
Q 024185 154 TTTNNNIYVLDAYGGEKRCGFSLEPSP-NTNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNEVACW-N---GNIGVVAC 227 (271)
Q Consensus 154 ~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~ 227 (271)
++.|+.|++||+++++.+..+..|... ..+.+++|+|+ ++++++++.||.|++||+++++.+..+ . .|...|.+
T Consensus 179 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 179 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 258 (615)
T ss_dssp EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred EeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEE
Confidence 999999999999999999998877761 13999999999 999999999999999999999999999 6 89999999
Q ss_pred EEEecCCcEEEEeC--CeEEEEcCCCCCCCcCC
Q 024185 228 LKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 228 ~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~ 258 (271)
++|+ ++++|++++ +.+++||+++++.....
T Consensus 259 ~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 290 (615)
T 1pgu_A 259 LSWL-DSQKFATVGADATIRVWDVTTSKCVQKW 290 (615)
T ss_dssp EEES-SSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence 9999 999999997 88999999987655443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-32 Score=215.27 Aligned_cols=236 Identities=11% Similarity=0.033 Sum_probs=190.1
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCc-hhhhhhhhhhccCceEEEEEe-cCcceeE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQ-LMIALCLVLLTTALEYGIFVL-MLASFQG 86 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~~~~~l~s~~~dg~i~iwd~-~~~~~~~ 86 (271)
|..+.++.+..++.+..++...+..... ...+..|...+.+++|+|+++ . +++++.||.|++||+ ++++. .
T Consensus 21 ~~~~~l~~~~~d~~v~iw~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~-----l~~~~~dg~i~~wd~~~~~~~-~ 93 (342)
T 1yfq_A 21 PSKSLLLITSWDGSLTVYKFDIQAKNVD-LLQSLRYKHPLLCCNFIDNTDLQ-----IYVGTVQGEILKVDLIGSPSF-Q 93 (342)
T ss_dssp GGGTEEEEEETTSEEEEEEEETTTTEEE-EEEEEECSSCEEEEEEEESSSEE-----EEEEETTSCEEEECSSSSSSE-E
T ss_pred CCCCEEEEEcCCCeEEEEEeCCCCcccc-ceeeeecCCceEEEEECCCCCcE-----EEEEcCCCeEEEEEeccCCce-E
Confidence 4456677777899999999877642222 233457889999999999999 8 889999999999999 87765 5
Q ss_pred EEec--CC--cceEEEcCCCCEEEEEecCCeEEEEeCCC---------CCCCcceEEEecCCccceEEEEEcCCCcEEEE
Q 024185 87 ILRL--RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRS---------YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL 153 (271)
Q Consensus 87 ~~~~--~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 153 (271)
.+.. |. +.+++|+| ++++++++.|+.|++||+++ .+. ...+. |...+.+++|+|++ +++
T Consensus 94 ~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~-~~~~v~~~~~~~~~--l~~ 165 (342)
T 1yfq_A 94 ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN----SNNTK-VKNKIFTMDTNSSR--LIV 165 (342)
T ss_dssp ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC----SSSSS-SCCCEEEEEECSSE--EEE
T ss_pred eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe----eeEEe-eCCceEEEEecCCc--EEE
Confidence 6666 64 56799999 99999999999999999986 443 22233 78899999999987 999
Q ss_pred EecCCeEEEEECCC-CeEEEEeecCCCCCceeeEEECC-CCCEEEEecCCCcEEEEEcCCc------eeEEEecCCcc--
Q 024185 154 TTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTR------NEVACWNGNIG-- 223 (271)
Q Consensus 154 ~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~-- 223 (271)
++.|+.|++||+++ ++.............+.+++|+| +++++++++.||.+++|+++.. +....+..|..
T Consensus 166 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
T 1yfq_A 166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245 (342)
T ss_dssp EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc
Confidence 99999999999988 54322222222223499999999 9999999999999999999887 77888887755
Q ss_pred -------eeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 224 -------VVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 224 -------~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
.|.+++|+|++++|++++ |.|++||+.+++......
T Consensus 246 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred cccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh
Confidence 899999999999999987 889999999887655443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-31 Score=212.91 Aligned_cols=233 Identities=13% Similarity=0.140 Sum_probs=184.7
Q ss_pred ecceeEEeee-c---ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecC---CchhhhhhhhhhccCceEEEEEecC
Q 024185 9 PITQALLFAR-Q---NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSAC---LQLMIALCLVLLTTALEYGIFVLML 81 (271)
Q Consensus 9 ~~~~~l~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~~~~~~l~s~~~dg~i~iwd~~~ 81 (271)
|....++.+. . ++.+..++...+..... ...+|...+.+++|+|+ +.. +++++.||.|++||+++
T Consensus 28 p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~-----l~~~~~dg~i~iwd~~~ 99 (357)
T 3i2n_A 28 PCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL---REIEKAKPIKCGTFGATSLQQRY-----LATGDFGGNLHIWNLEA 99 (357)
T ss_dssp TTSSEEEEEEC--CCCEEEEEEEECSSSEEEE---EEEEESSCEEEEECTTCCTTTCC-----EEEEETTSCEEEECTTS
T ss_pred CCCceEEEecCccCCCcEEEEEeCCCCcccce---eeecccCcEEEEEEcCCCCCCce-----EEEecCCCeEEEEeCCC
Confidence 3344555444 2 78999998876632221 12367889999999999 577 88999999999999998
Q ss_pred cc-eeEEEecCC--cceE------EEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCcc----ceEEEE----E
Q 024185 82 AS-FQGILRLRG--RPTV------AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA----EVCDIK----F 144 (271)
Q Consensus 82 ~~-~~~~~~~~~--~~~~------~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~----~v~~~~----~ 144 (271)
++ .+..+..|. +.++ +|+|++++|++++.||.|++||+++++. + ...+..|.+ .+.+++ |
T Consensus 100 ~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~-~--~~~~~~~~~~~~~~v~~~~~~~~~ 176 (357)
T 3i2n_A 100 PEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD-P--VANMEPVQGENKRDCWTVAFGNAY 176 (357)
T ss_dssp CSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS-C--SEEECCCTTSCCCCEEEEEEECCC
T ss_pred CCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC-c--ceeccccCCCCCCceEEEEEEecc
Confidence 88 788888775 4556 4578999999999999999999998762 1 333434433 788888 7
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECC---CCCEEEEecCCCcEEEEEcCCceeEEEec--
Q 024185 145 SNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP---DGQYVVSGSGDGTLHAWNINTRNEVACWN-- 219 (271)
Q Consensus 145 s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-- 219 (271)
+|+++++++++.|+.|++||+++++.... ..+... +.+++|+| +++++++++.||.|++||+++++....+.
T Consensus 177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~--v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 253 (357)
T 3i2n_A 177 NQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNG--VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASV 253 (357)
T ss_dssp C-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSC--EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEE
T ss_pred CCCCCEEEEEccCCeEEEEECccCceeee-cCCCCc--eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeee
Confidence 88999999999999999999999987554 334444 99999999 99999999999999999998877655444
Q ss_pred ---CCcceeEEEEEecCCc-EEEEeC--CeEEEEcCCCCCCC
Q 024185 220 ---GNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 220 ---~~~~~v~~~~~s~~~~-~l~~~~--~~v~iw~~~~~~~~ 255 (271)
+|...|.+++|+|+++ +|++++ |.|++||++.+...
T Consensus 254 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 254 SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 8999999999999998 788887 88999999876544
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=223.94 Aligned_cols=235 Identities=11% Similarity=0.089 Sum_probs=188.5
Q ss_pred cceeEEeeecceeeEEEEeeccceee---EEEEEcccccceEEeeEEecCCc-hhhhhhhhhhccCceEEEEEecCccee
Q 024185 10 ITQALLFARQNIILILLESLCGIYQC---MIIEFFATSKGIRRGLFLSACLQ-LMIALCLVLLTTALEYGIFVLMLASFQ 85 (271)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~ 85 (271)
....++.+..++.+.+++...+.... .....+.+|...+.+++|+|++. . +++++.||.|++||+++++.+
T Consensus 93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~-----l~s~~~dg~i~iwd~~~~~~~ 167 (402)
T 2aq5_A 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV-----LLSAGCDNVILVWDVGTGAAV 167 (402)
T ss_dssp CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTE-----EEEEETTSCEEEEETTTTEEE
T ss_pred CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCE-----EEEEcCCCEEEEEECCCCCcc
Confidence 34556666778999999987652210 12344778999999999999984 5 789999999999999999999
Q ss_pred EEE--ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEe-cCCccc-eEEEEEcCCCcEEEEE---ec
Q 024185 86 GIL--RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV-GGDTAE-VCDIKFSNDGKSMLLT---TT 156 (271)
Q Consensus 86 ~~~--~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~---~~ 156 (271)
..+ ..|. +.+++|+|++++|++++.||.|++||+++++. ...+ .+|.+. +.++.|+|++++++++ +.
T Consensus 168 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~ 243 (402)
T 2aq5_A 168 LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV----VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS 243 (402)
T ss_dssp EEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE----EEEEECSSCSSSCCEEEECSTTEEEEEEECTTC
T ss_pred EEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce----eeeeccCCCCCcceEEEEcCCCcEEEEeccCCC
Confidence 888 5554 67799999999999999999999999998764 4455 577765 8999999999999999 78
Q ss_pred CCeEEEEECCCCeE-EEEeecCCCCCceeeEEECCCCCEEE-EecCCCcEEEEEcCCcee-EEEecC--CcceeEEEEEe
Q 024185 157 NNNIYVLDAYGGEK-RCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGTLHAWNINTRNE-VACWNG--NIGVVACLKWA 231 (271)
Q Consensus 157 d~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~~~~s 231 (271)
|+.|++||+++++. ..... ......+.+++|+|++++++ +++.||.|++||+.+++. +..+.. |...|.+++|+
T Consensus 244 d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s 322 (402)
T 2aq5_A 244 ERQVALWDTKHLEEPLSLQE-LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM 322 (402)
T ss_dssp CEEEEEEETTBCSSCSEEEE-CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC
T ss_pred CceEEEEcCccccCCceEEe-ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe
Confidence 99999999988764 22222 22223489999999999986 556799999999998874 444433 55889999999
Q ss_pred cCCcEEEEeCCeEEEEcCCCCCC
Q 024185 232 PRRAMFVAASSVLSFWIPNPSSN 254 (271)
Q Consensus 232 ~~~~~l~~~~~~v~iw~~~~~~~ 254 (271)
|++.+++++++.+++|++.+++.
T Consensus 323 p~~~~~~s~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 323 PKRGLEVNKCEIARFYKLHERKC 345 (402)
T ss_dssp CGGGSCGGGTEEEEEEEEETTEE
T ss_pred cccccceecceeEEEEEcCCCcE
Confidence 99999988778999999987643
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-31 Score=216.68 Aligned_cols=223 Identities=13% Similarity=0.162 Sum_probs=190.2
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
.+.++.+..++.+..++...+ .....+.+|.+.+.++.+ +++. +++|+.||.|++||+++++.+..+..
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~--~~~~-----l~sg~~dg~i~vwd~~~~~~~~~~~~ 211 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNTL----ECKRILTGHTGSVLCLQY--DERV-----IITGSSDSTVRVWDVNTGEMLNTLIH 211 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSC----CEEEEECCCSSCEEEEEC--CSSE-----EEEEETTSCEEEEESSSCCEEEEECC
T ss_pred CCEEEEEeCCCeEEEEeCCCC----eEEEEEcCCCCcEEEEEE--CCCE-----EEEEcCCCeEEEEECCCCcEEEEEcC
Confidence 345666678999999998766 445568899999999888 6666 88999999999999999999999988
Q ss_pred CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 91 RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
|.....++..+++.+++++.||.|++||+.+++. ......+.+|...|.+++| +++++++++.||.|++||+++++.
T Consensus 212 h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~ 288 (435)
T 1p22_A 212 HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF 288 (435)
T ss_dssp CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC-CEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCE
T ss_pred CCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC-ceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE
Confidence 8655433333567999999999999999988764 1122557789999999999 678999999999999999999999
Q ss_pred EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEc
Q 024185 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 248 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~ 248 (271)
+..+..|... +.++.+ +++++++|+.||.|++||+++++.+..+.+|...|.+++| ++.+|++++ |.|++||
T Consensus 289 ~~~~~~~~~~--v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd 362 (435)
T 1p22_A 289 VRTLNGHKRG--IACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWD 362 (435)
T ss_dssp EEEEECCSSC--EEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCc--EEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEE
Confidence 9999887765 888888 5789999999999999999999999999999999999999 788899987 8899999
Q ss_pred CCCCC
Q 024185 249 PNPSS 253 (271)
Q Consensus 249 ~~~~~ 253 (271)
+.++.
T Consensus 363 ~~~~~ 367 (435)
T 1p22_A 363 LVAAL 367 (435)
T ss_dssp HHHHT
T ss_pred CCCCC
Confidence 97654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-31 Score=212.16 Aligned_cols=221 Identities=11% Similarity=0.037 Sum_probs=176.6
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec-
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL- 90 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 90 (271)
..++.+..++.+.+++..... ......+.+|.+.+.+++|+|++++ |++++.||.|++||+++++.+.....
T Consensus 55 ~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~-----l~s~~~dg~v~iwd~~~~~~~~~~~~~ 127 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEVQDSG--QTIPKAQQMHTGPVLDVCWSDDGSK-----VFTASCDKTAKMWDLSSNQAIQIAQHD 127 (368)
T ss_dssp EEEEEEETTSEEEEEEECTTS--CEEEEEEEECSSCEEEEEECTTSSE-----EEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred eEEEEECCCCcEEEEEcCCCC--ceeEEEeccccCCEEEEEECcCCCE-----EEEEcCCCcEEEEEcCCCCceeecccc
Confidence 566777779999999987621 1233557789999999999999998 88999999999999999887764432
Q ss_pred CCcceEEE--cCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEec-----------------------------------
Q 024185 91 RGRPTVAF--DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG----------------------------------- 133 (271)
Q Consensus 91 ~~~~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----------------------------------- 133 (271)
..+.+++| +|++++|++++.||.|++||+++++. .......
T Consensus 128 ~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 205 (368)
T 3mmy_A 128 APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP--MMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFR 205 (368)
T ss_dssp SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC--SEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEE
T ss_pred CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE--EEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhh
Confidence 24677999 89999999999999999999988764 2222111
Q ss_pred ----CCccceEEEEEcCCCcE----EEEEecCCeEEEEECCCC---eEEEEeecCCCC----------CceeeEEECCCC
Q 024185 134 ----GDTAEVCDIKFSNDGKS----MLLTTTNNNIYVLDAYGG---EKRCGFSLEPSP----------NTNTEATFTPDG 192 (271)
Q Consensus 134 ----~~~~~v~~~~~s~~~~~----l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~----------~~v~~~~~~~~~ 192 (271)
.+.....++.+.++... +++++.|+.|++||++.. +....+..+... ..+.+++|+|++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 285 (368)
T 3mmy_A 206 RIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH 285 (368)
T ss_dssp ECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT
T ss_pred hccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCC
Confidence 01133445555554443 999999999999999887 445566655431 149999999999
Q ss_pred CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 193 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
++|++++.||.|++||+++++.+..+.+|...|.+++|+|+|++|++++
T Consensus 286 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 286 GTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp CCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEE
T ss_pred CEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEe
Confidence 9999999999999999999999999999999999999999999999997
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-32 Score=237.25 Aligned_cols=206 Identities=14% Similarity=0.222 Sum_probs=175.4
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec--CcceeEEEecCC--cceEEEcCC--CCEEEEEecCC
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM--LASFQGILRLRG--RPTVAFDQQ--GLVFAVAMEAG 112 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~--~~~~~~~~~--~~~l~~~~~d~ 112 (271)
..+.+|.+.|.+++|+|+++. +++|+.||.|++||+. +++....+.+|. +.+++|+|+ +++|++|+.||
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~-----latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKR-----LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp -----CCCCEEEECCCSSSCC-----EEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred eecccCcceeEEEEECCCCCe-----EEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 457899999999999999998 8899999999999998 556777787774 667999988 99999999999
Q ss_pred eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC--CcEEEEEecCCeEEEEECCCCeE--EEEeecCCCCCceeeEEE
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEK--RCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~ 188 (271)
.|++||+.+++. .....+.+|...|.+++|+|+ ++.+++++.||.|++||++++.. ...+..+.. .+.+++|
T Consensus 78 ~I~vwd~~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~--~v~~l~~ 153 (753)
T 3jro_A 78 KVLIWKEENGRW--SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI--GVNSASW 153 (753)
T ss_dssp CEEEEEEETTEE--EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS--CEEEEEE
T ss_pred eEEEEECCCCcc--cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC--ceEEEEe
Confidence 999999988752 235667789999999999999 99999999999999999988743 334444554 4999999
Q ss_pred CC-------------CCCEEEEecCCCcEEEEEcCCc----eeEEEecCCcceeEEEEEecC---CcEEEEeC--CeEEE
Q 024185 189 TP-------------DGQYVVSGSGDGTLHAWNINTR----NEVACWNGNIGVVACLKWAPR---RAMFVAAS--SVLSF 246 (271)
Q Consensus 189 ~~-------------~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~--~~v~i 246 (271)
+| +++++++|+.||.|++||++++ .....+.+|...|.+++|+|+ ++++++++ |.|++
T Consensus 154 ~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp CCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred cCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence 99 5899999999999999999876 566778899999999999999 89999998 88999
Q ss_pred EcCCCCC
Q 024185 247 WIPNPSS 253 (271)
Q Consensus 247 w~~~~~~ 253 (271)
||+.++.
T Consensus 234 wd~~~~~ 240 (753)
T 3jro_A 234 WTQDNEQ 240 (753)
T ss_dssp EEESSSS
T ss_pred ecCCCCC
Confidence 9998864
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=229.85 Aligned_cols=229 Identities=13% Similarity=0.062 Sum_probs=176.6
Q ss_pred eEEeeecceeeEEEEeecccee-------eEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-e
Q 024185 13 ALLFARQNIILILLESLCGIYQ-------CMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-F 84 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~ 84 (271)
.|+.+..++.+.+++...+... ......+.+|...+.+++|++++ . |++|+.||+|++||++++. +
T Consensus 227 ~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~-----lasgs~DgtV~lWD~~~~~~~ 300 (524)
T 2j04_B 227 CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T-----VVCGFKNGFVAEFDLTDPEVP 300 (524)
T ss_dssp EEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E-----EEEEETTSEEEEEETTBCSSC
T ss_pred eEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e-----EEEEeCCCEEEEEECCCCCCc
Confidence 4445667899999987654211 00112467889999999999865 4 7899999999999998764 4
Q ss_pred eEEEecCC--cceE--EEcCCC-CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc--cceEEEEEcCCCcEEEEEecC
Q 024185 85 QGILRLRG--RPTV--AFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT--AEVCDIKFSNDGKSMLLTTTN 157 (271)
Q Consensus 85 ~~~~~~~~--~~~~--~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~d 157 (271)
...+.+|. +.++ +|+|++ ++|++++.|++|++||+++++. ...+.+|. ..|.+++|+|+++.+++++.|
T Consensus 301 ~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~----~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d 376 (524)
T 2j04_B 301 SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT----TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA 376 (524)
T ss_dssp SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH----HCEEEEECSCCSCCCEEEETTTTEEEEECSS
T ss_pred eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc----ccccccccccCcccceEeCCCcCeEEEeCCC
Confidence 55677775 5556 568887 8999999999999999987654 22333443 248899999999999999999
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC--------------------------
Q 024185 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-------------------------- 211 (271)
Q Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------------------------- 211 (271)
++|++||+++++++..+.+|... |.+++|+|+|++|++|+.||+|++||+..
T Consensus 377 ~tv~lwd~~~~~~~~~l~gH~~~--V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 454 (524)
T 2j04_B 377 SSLRAVPSRAAFAVHPLVSRETT--ITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIK 454 (524)
T ss_dssp SEEEEEETTCTTCCEEEEECSSC--EEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSS
T ss_pred CcEEEEECcccccceeeecCCCc--eEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCC
Confidence 99999999999888888888766 99999999999999999999999987521
Q ss_pred ------------------ceeEEEecCCcceeEEEEEecCCc---EEEEeC--CeEEEEcCCCCC
Q 024185 212 ------------------RNEVACWNGNIGVVACLKWAPRRA---MFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 212 ------------------~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~--~~v~iw~~~~~~ 253 (271)
+..+..+.+|...|.+++|+|++. ++++|+ |.|+||++....
T Consensus 455 g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 455 DDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp SCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred CCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 111223456788899999999964 899987 899999987643
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-31 Score=217.46 Aligned_cols=230 Identities=13% Similarity=0.157 Sum_probs=182.4
Q ss_pred ecceeEEeeecceeeEEEEee---ccceee----EEEEE--ccc--ccceEEeeE--EecCCchhhhhhhhhhccCceEE
Q 024185 9 PITQALLFARQNIILILLESL---CGIYQC----MIIEF--FAT--SKGIRRGLF--LSACLQLMIALCLVLLTTALEYG 75 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~---~~~~~~----~~~~~--~~~--~~~~v~~~~--~s~~~~~~~~~~l~s~~~dg~i~ 75 (271)
|..+.++.+..++.+..++.. .+.... ..++. +.. +...+.++. +++++.. +++++.||.|+
T Consensus 121 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~d~~i~ 195 (437)
T 3gre_A 121 PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL-----LVALTNLSRVI 195 (437)
T ss_dssp TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE-----EEEEETTSEEE
T ss_pred CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCE-----EEEEeCCCeEE
Confidence 445667777888999999874 221110 11111 222 445566666 5577887 88999999999
Q ss_pred EEEecCcceeEEEec--C--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEec-CCccceEEEEEcC----
Q 024185 76 IFVLMLASFQGILRL--R--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG-GDTAEVCDIKFSN---- 146 (271)
Q Consensus 76 iwd~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~s~---- 146 (271)
+||+++++.+..+.. | .+.+++|+|++++|++|+.||.|++||+++++. ...+. .|...|.+++|+|
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~s~ 271 (437)
T 3gre_A 196 IFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL----IRSWSFGDHAPITHVEVCQFYGK 271 (437)
T ss_dssp EEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE----EEEEBCTTCEEEEEEEECTTTCT
T ss_pred EEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE----EEEEecCCCCceEEEEeccccCC
Confidence 999999999999976 3 467799999999999999999999999998664 44443 6778999996654
Q ss_pred CCcEEEEEecCCeEEEEECCCCeEEEEeecCC------------------------CCCceeeEEECCCCCEEEEecCCC
Q 024185 147 DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP------------------------SPNTNTEATFTPDGQYVVSGSGDG 202 (271)
Q Consensus 147 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------------------------~~~~v~~~~~~~~~~~l~~~~~dg 202 (271)
++.+|++++.|+.|++||+++++.+..+..+. +...|.+++|+ ++++|++|+.||
T Consensus 272 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~ 350 (437)
T 3gre_A 272 NSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS 350 (437)
T ss_dssp TEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT
T ss_pred CccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCC
Confidence 68899999999999999999999888887553 22347888998 778999999999
Q ss_pred cEEEEEcCCceeEEEecC-------------------------------------CcceeEEEEEecC--CcEEEEeC--
Q 024185 203 TLHAWNINTRNEVACWNG-------------------------------------NIGVVACLKWAPR--RAMFVAAS-- 241 (271)
Q Consensus 203 ~i~iwd~~~~~~~~~~~~-------------------------------------~~~~v~~~~~s~~--~~~l~~~~-- 241 (271)
.|++||+.+++....+.+ |...|++++|+++ +.+|++++
T Consensus 351 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d 430 (437)
T 3gre_A 351 SIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNS 430 (437)
T ss_dssp EEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETT
T ss_pred eEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCC
Confidence 999999999888777665 7889999999998 77999998
Q ss_pred CeEEEEc
Q 024185 242 SVLSFWI 248 (271)
Q Consensus 242 ~~v~iw~ 248 (271)
|.|++|+
T Consensus 431 G~I~iw~ 437 (437)
T 3gre_A 431 GLIGIFQ 437 (437)
T ss_dssp SCEEEEC
T ss_pred ceEEEeC
Confidence 8999995
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=214.19 Aligned_cols=214 Identities=14% Similarity=0.132 Sum_probs=174.8
Q ss_pred EEEEEcccccceEEeeEEecC---CchhhhhhhhhhccCceEEEEEecC-ccee-EEEecCC--cceEEEcCCCCEEEEE
Q 024185 36 MIIEFFATSKGIRRGLFLSAC---LQLMIALCLVLLTTALEYGIFVLML-ASFQ-GILRLRG--RPTVAFDQQGLVFAVA 108 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~~---~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~--~~~~~~~~~~~~l~~~ 108 (271)
..++.+.+|.+.|.+++|+|+ ++. |++++.||.|++||+++ +..+ ..+..|. +.+++|+|++++|+++
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~-----l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNF-----LIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEE-----EEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceE-----EEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence 345668999999999999999 577 88999999999999987 5544 6666664 6779999999999999
Q ss_pred ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEE--cCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCC-------
Q 024185 109 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF--SNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS------- 179 (271)
Q Consensus 109 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~------- 179 (271)
+.||.|++||+++++. ..+.+|...|.+++| +|++++|++++.|+.|++||+++++.+..+..+..
T Consensus 105 ~~dg~v~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 179 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQA-----IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI 179 (368)
T ss_dssp ETTSEEEEEETTTTEE-----EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE
T ss_pred cCCCcEEEEEcCCCCc-----eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec
Confidence 9999999999998763 335569999999999 89999999999999999999998877666654321
Q ss_pred --------------------------------CCceeeEEECCCCCE----EEEecCCCcEEEEEcCCc---eeEEEecC
Q 024185 180 --------------------------------PNTNTEATFTPDGQY----VVSGSGDGTLHAWNINTR---NEVACWNG 220 (271)
Q Consensus 180 --------------------------------~~~v~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~ 220 (271)
.....++.+.++... +++++.||.|++||++.. +.+..+.+
T Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 259 (368)
T 3mmy_A 180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC 259 (368)
T ss_dssp TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence 012334444444333 999999999999999887 56777877
Q ss_pred Ccc------------eeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 221 NIG------------VVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 221 ~~~------------~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
|.. .|.+++|+|++++|++++ |.|++||+++++......
T Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (368)
T 3mmy_A 260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE 312 (368)
T ss_dssp SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence 776 699999999999999997 889999999887655443
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=238.38 Aligned_cols=200 Identities=14% Similarity=0.058 Sum_probs=170.6
Q ss_pred ccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec-CCcceEEEcCCCCEEEEEecCCeEEEEeCC
Q 024185 42 ATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL-RGRPTVAFDQQGLVFAVAMEAGAIKLFDSR 120 (271)
Q Consensus 42 ~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 120 (271)
.+|.+.|.+++|+|++++ ||+|+.||+|++|+..+.+....+.. ..+.+++|+| +++|++++.|+.|++||++
T Consensus 14 ~gh~~~V~~lafspdg~~-----lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNL-----LAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY 87 (902)
T ss_dssp EECSSCEEEEEEETTTTE-----EEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred cCCCCCcEEEEECCCCCE-----EEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence 478899999999999998 89999999999999988776655542 2467799999 8899999999999999999
Q ss_pred CCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEE-----------EeecCCCCCceeeEEEC
Q 024185 121 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC-----------GFSLEPSPNTNTEATFT 189 (271)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-----------~~~~~~~~~~v~~~~~~ 189 (271)
+++. ...+. |...|++++|+|+++++++|+.||.|++||+++++... .+..|. ..|.+++|+
T Consensus 88 ~~~~----~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~--~~V~sl~~s 160 (902)
T 2oaj_A 88 SQKV----LTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL--SPIVSIQWN 160 (902)
T ss_dssp TCSE----EEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC--CCCCEEEEE
T ss_pred CCcE----EEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC--CCeEEEEEc
Confidence 8775 33443 66889999999999999999999999999999887631 122343 459999999
Q ss_pred CC-CCEEEEecCCCcEEEEEcCCceeEEEecCC------------------cceeEEEEEecCCcEEEEeC--CeEEEEc
Q 024185 190 PD-GQYVVSGSGDGTLHAWNINTRNEVACWNGN------------------IGVVACLKWAPRRAMFVAAS--SVLSFWI 248 (271)
Q Consensus 190 ~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~s~~~~~l~~~~--~~v~iw~ 248 (271)
|+ +..+++|+.||.| +||+++++.+..+..| ...|.+++|+|+|++|++++ +.|++||
T Consensus 161 p~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd 239 (902)
T 2oaj_A 161 PRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD 239 (902)
T ss_dssp TTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred cCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 96 5789999999999 9999999999888765 46799999999999999998 8899999
Q ss_pred CCCCCCC
Q 024185 249 PNPSSNS 255 (271)
Q Consensus 249 ~~~~~~~ 255 (271)
++++++.
T Consensus 240 ~~~g~~~ 246 (902)
T 2oaj_A 240 ANSGHMI 246 (902)
T ss_dssp TTTCCEE
T ss_pred CCCCcEE
Confidence 9887754
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=214.65 Aligned_cols=197 Identities=8% Similarity=-0.023 Sum_probs=163.5
Q ss_pred EEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCC------CC
Q 024185 52 FLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYD------KG 125 (271)
Q Consensus 52 ~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------~~ 125 (271)
.+.+++.. +++|+.||.|++||+++++.+..+....+..+.++|+ +++++.|++|++|+..... ..
T Consensus 43 ~~~~d~~~-----l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYDKWV-----CMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSEEEEE-----EEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhcCCCCE-----EEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 34456666 8899999999999999999988888667777888888 9999999999999776321 11
Q ss_pred cceEEEecCCccceEEEEEcC--CCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCc
Q 024185 126 PFDTFLVGGDTAEVCDIKFSN--DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 203 (271)
Q Consensus 126 ~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 203 (271)
........+|.+.|.+++|+| +++++++++.|+.|++||+++++.......+.. ..+.+++|+|+++++++|+.||.
T Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~~i~~~~~~pdg~~lasg~~dg~ 193 (343)
T 3lrv_A 115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD-VEYSSGVLHKDSLLLALYSPDGI 193 (343)
T ss_dssp CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS-CCCCEEEECTTSCEEEEECTTSC
T ss_pred ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC-CceEEEEECCCCCEEEEEcCCCE
Confidence 111222336778999999999 999999999999999999999988665543322 34899999999999999999999
Q ss_pred EEEEEcCCceeE-EEecC-CcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCCcC
Q 024185 204 LHAWNINTRNEV-ACWNG-NIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 204 i~iwd~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~~~ 257 (271)
|++||+++++.+ ..+.. |.++|.+++|+|++.+|++++ +.|++||+++++....
T Consensus 194 i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~ 250 (343)
T 3lrv_A 194 LDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLA 250 (343)
T ss_dssp EEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBS
T ss_pred EEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCccee
Confidence 999999999988 78888 999999999999999999998 8899999998876543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=249.91 Aligned_cols=234 Identities=12% Similarity=0.116 Sum_probs=202.0
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++++..++.+..++...+ .....+.+|.+.+.+++|+|+++. +++++.||.|++||+.+++....
T Consensus 971 p~g~~l~~g~~~g~i~i~d~~~~----~~~~~~~~h~~~v~~l~~s~dg~~-----l~s~~~dg~i~vwd~~~~~~~~~- 1040 (1249)
T 3sfz_A 971 PHLEYVAFGDEDGAIKIIELPNN----RVFSSGVGHKKAVRHIQFTADGKT-----LISSSEDSVIQVWNWQTGDYVFL- 1040 (1249)
T ss_dssp TTSSEEEEEETTSCCEEEETTTT----SCEEECCCCSSCCCCEEECSSSSC-----EEEECSSSBEEEEETTTTEEECC-
T ss_pred CCCCEEEEEcCCCCEEEEEcCCC----ceeeecccCCCceEEEEECCCCCE-----EEEEcCCCEEEEEECCCCceEEE-
Confidence 44456777788899999988776 334557899999999999999998 88999999999999999876643
Q ss_pred ecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
..+ .+.+++|+|++. +++++.||.|++||+.+++. ...+.+|.+.|.+++|+|+++++++++.|+.|++||+.
T Consensus 1041 ~~~~~~v~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~~----~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1041 QAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRI----ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115 (1249)
T ss_dssp BCCSSCEEEEEECSSSE-EEEEESSSEEEEEETTTTCC----CEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSS
T ss_pred ecCCCcEEEEEEcCCCc-EEEEECCCcEEEEECCCCce----eEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 333 356699999664 78888999999999999886 56677899999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEe---------cCCcceeEEEEEecCCcEE
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW---------NGNIGVVACLKWAPRRAMF 237 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~l 237 (271)
+++.+..+..|... |.+++|+|+|+++++++.||.|++||+.+++.+..+ .+|.+.|++++|+|||+++
T Consensus 1116 ~~~~~~~l~~h~~~--v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l 1193 (1249)
T 3sfz_A 1116 LLSPLHELKGHNGC--VRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTL 1193 (1249)
T ss_dssp SSSCSBCCCCCSSC--EEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCE
T ss_pred CcceeeeeccCCCc--EEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEE
Confidence 99988888877765 999999999999999999999999999998877655 6788999999999999999
Q ss_pred EEeCCeEEEEcCCCCCCCcCCC
Q 024185 238 VAASSVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 238 ~~~~~~v~iw~~~~~~~~~~~~ 259 (271)
++++|.+++||+.+++......
T Consensus 1194 ~s~~g~v~vwd~~~g~~~~~~~ 1215 (1249)
T 3sfz_A 1194 VSAGGYLKWWNVATGDSSQTFY 1215 (1249)
T ss_dssp EEESSSEEEBCSSSCBCCCCCC
T ss_pred EECCCeEEEEECCCCceeeeee
Confidence 9999999999999988765553
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-30 Score=227.00 Aligned_cols=232 Identities=15% Similarity=0.164 Sum_probs=200.4
Q ss_pred eecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc-ceeE
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA-SFQG 86 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~ 86 (271)
.|..+.++.+..++.+..++...+ .....+.+|.+.+.+++|+|+++. +++++.||.|++||++++ ....
T Consensus 64 s~~~~~l~~~~~dg~i~vw~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~-----l~~~~~dg~i~vw~~~~~~~~~~ 134 (814)
T 3mkq_A 64 IARKNWIIVGSDDFRIRVFNYNTG----EKVVDFEAHPDYIRSIAVHPTKPY-----VLSGSDDLTVKLWNWENNWALEQ 134 (814)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECSSSSE-----EEEEETTSEEEEEEGGGTSEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEECCCC----cEEEEEecCCCCEEEEEEeCCCCE-----EEEEcCCCEEEEEECCCCceEEE
Confidence 355566777888999999998777 444557889999999999999998 889999999999999887 5667
Q ss_pred EEecCC--cceEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcceEEEec-CCccceEEEEEcC--CCcEEEEEecCCeE
Q 024185 87 ILRLRG--RPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG-GDTAEVCDIKFSN--DGKSMLLTTTNNNI 160 (271)
Q Consensus 87 ~~~~~~--~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~d~~i 160 (271)
.+..|. +.+++|+| +++.+++++.||.|++||+.+++. ...+. .+...+.+++|+| ++.++++++.||.|
T Consensus 135 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 210 (814)
T 3mkq_A 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210 (814)
T ss_dssp EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC----SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEE
T ss_pred EEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc----eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEE
Confidence 777664 66799999 889999999999999999987765 33333 3448899999999 99999999999999
Q ss_pred EEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCc--EEE
Q 024185 161 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA--MFV 238 (271)
Q Consensus 161 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~ 238 (271)
++||+++++.+..+..|... +.+++|+|+++++++++.||.|++||+.+++.+..+..|...+.+++|+|++. +++
T Consensus 211 ~~~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 288 (814)
T 3mkq_A 211 KIWDYQTKSCVATLEGHMSN--VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA 288 (814)
T ss_dssp EEEETTTTEEEEEEECCSSC--EEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEE
T ss_pred EEEECCCCcEEEEEcCCCCC--EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEE
Confidence 99999999999998887765 99999999999999999999999999999999999999999999999999987 566
Q ss_pred EeC-CeEEEEcCCCCCC
Q 024185 239 AAS-SVLSFWIPNPSSN 254 (271)
Q Consensus 239 ~~~-~~v~iw~~~~~~~ 254 (271)
+++ +.+.+|++.....
T Consensus 289 ~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 289 SGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp EEETTEEEEEECSCCSC
T ss_pred EEeCCCEEEEEcCCCCc
Confidence 666 8899999876543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-31 Score=212.71 Aligned_cols=221 Identities=10% Similarity=0.016 Sum_probs=170.3
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec---------Cc
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM---------LA 82 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~---------~~ 82 (271)
..++.+..++.+..++...+..... +. ...+..+.++|. +++++.|+++++|+.+ ++
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~~~~~~----~~--~~~v~~~~~~~~--------~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDSKTITT----IT--TPNPRTGGEHPA--------IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEEE----EE--EECCCTTCCCCS--------EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred CEEEEECCCCcEEEEECCCCcEEEE----Ee--cCCceeeeeCCc--------eEEecCCCeEEEEEccCceEEeecCCc
Confidence 3455567799999999877632222 22 456667778887 4589999999999765 44
Q ss_pred ceeEEEe-cC--CcceEEEcC--CCCEEEEEecCCeEEEEeCCCCCCCcceEEEe-cCCccceEEEEEcCCCcEEEEEec
Q 024185 83 SFQGILR-LR--GRPTVAFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV-GGDTAEVCDIKFSNDGKSMLLTTT 156 (271)
Q Consensus 83 ~~~~~~~-~~--~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~ 156 (271)
+.++.+. .| .+.+++|+| +++++++++.||.|++||+++++. .... ..|...+.+++|+|++.+|++|+.
T Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~~i~~~~~~pdg~~lasg~~ 190 (343)
T 3lrv_A 115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ----YIVHSAKSDVEYSSGVLHKDSLLLALYSP 190 (343)
T ss_dssp CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE----EEEECCCSSCCCCEEEECTTSCEEEEECT
T ss_pred ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE----EEEEecCCCCceEEEEECCCCCEEEEEcC
Confidence 4444444 33 367799999 999999999999999999998774 2222 345668999999999999999999
Q ss_pred CCeEEEEECCCCeEE-EEeec-CCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecC---CcceeE--EEE
Q 024185 157 NNNIYVLDAYGGEKR-CGFSL-EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG---NIGVVA--CLK 229 (271)
Q Consensus 157 d~~i~~~d~~~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~--~~~ 229 (271)
||.|++||+++++.+ ..+.. |... |.+++|+|++++|++++ ++.|++||+++++.+..+.. |...+. +++
T Consensus 191 dg~i~iwd~~~~~~~~~~~~~~h~~~--v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (343)
T 3lrv_A 191 DGILDVYNLSSPDQASSRFPVDEEAK--IKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD 267 (343)
T ss_dssp TSCEEEEESSCTTSCCEECCCCTTSC--EEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEE
T ss_pred CCEEEEEECCCCCCCccEEeccCCCC--EEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEE
Confidence 999999999999877 77776 6654 99999999999999999 45999999999877655443 444444 699
Q ss_pred EecCCcEEEE--e-CCeEEEEcCCCCC
Q 024185 230 WAPRRAMFVA--A-SSVLSFWIPNPSS 253 (271)
Q Consensus 230 ~s~~~~~l~~--~-~~~v~iw~~~~~~ 253 (271)
|+|+|++|++ + ++.+++|++++..
T Consensus 268 ~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 268 IDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred ECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 9999999999 4 3789999996654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=215.72 Aligned_cols=224 Identities=13% Similarity=0.163 Sum_probs=182.3
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee---EEE
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ---GIL 88 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~ 88 (271)
+.++.+..++.+..++...+ .....+.+|...+.++.++++ . +++++.||.|++||+++++.. ..+
T Consensus 184 ~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~--~-----l~s~s~dg~i~vwd~~~~~~~~~~~~~ 252 (435)
T 1p22_A 184 RVIITGSSDSTVRVWDVNTG----EMLNTLIHHCEAVLHLRFNNG--M-----MVTCSKDRSIAVWDMASPTDITLRRVL 252 (435)
T ss_dssp SEEEEEETTSCEEEEESSSC----CEEEEECCCCSCEEEEECCTT--E-----EEEEETTSCEEEEECSSSSCCEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCC----cEEEEEcCCCCcEEEEEEcCC--E-----EEEeeCCCcEEEEeCCCCCCceeeeEe
Confidence 45556677899999998777 445668899999999999753 4 789999999999999987755 556
Q ss_pred ecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC
Q 024185 89 RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 168 (271)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 168 (271)
.+|...+.++..+++++++++.||.|++||+++++. ...+.+|...+.+++|+ ++++++++.||.|++||++++
T Consensus 253 ~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 253 VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF----VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred cCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcE----EEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC
Confidence 666544433333889999999999999999998875 66677899999999994 679999999999999999999
Q ss_pred eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCce---------eEEEecCCcceeEEEEEecCCcEEEE
Q 024185 169 EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN---------EVACWNGNIGVVACLKWAPRRAMFVA 239 (271)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~ 239 (271)
+.+..+..|... +.+++| +++++++|+.||.|++||+.+++ .+..+.+|.+.|.+++| ++.+|++
T Consensus 327 ~~~~~~~~h~~~--v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s 400 (435)
T 1p22_A 327 ACLRVLEGHEEL--VRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVS 400 (435)
T ss_dssp CEEEEECCCSSC--EEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEE
T ss_pred CEEEEEeCCcCc--EEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEE
Confidence 999999887766 888888 78899999999999999998776 78889999999999999 7888999
Q ss_pred eC--CeEEEEcCCCCCCCcCC
Q 024185 240 AS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 240 ~~--~~v~iw~~~~~~~~~~~ 258 (271)
++ |.|++||+.+.......
T Consensus 401 ~s~Dg~i~iwd~~~~~~~~~~ 421 (435)
T 1p22_A 401 SSHDDTILIWDFLNDPAAQAE 421 (435)
T ss_dssp CCSSSEEEEEC----------
T ss_pred EeCCCEEEEEECCCCCCcccC
Confidence 88 88999999887654433
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=210.72 Aligned_cols=201 Identities=14% Similarity=0.100 Sum_probs=161.2
Q ss_pred EcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEE-EEecCCeEEEEe
Q 024185 40 FFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFA-VAMEAGAIKLFD 118 (271)
Q Consensus 40 ~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d 118 (271)
.+..|.+.|.+++|+|++++ |++|+.++ +++||.++++.......+++..+++.++++.++ +++.|+.|++||
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~-----la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSC-----LILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp -----CCCCCEEEECTTSSE-----EEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred ccccCCCceEEEEECCCCCE-----EEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 35788999999999999998 77777765 789999988877666666777899999988774 567788999999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCC-----------------------------------cEEEE--EecCCeEE
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-----------------------------------KSMLL--TTTNNNIY 161 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----------------------------------~~l~~--~~~d~~i~ 161 (271)
..+++. ...+. +...|.+++|+++. .++++ |+.||.|+
T Consensus 88 ~~~~~~----~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~ 162 (355)
T 3vu4_A 88 DVKKQD----VSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIH 162 (355)
T ss_dssp TTTTEE----EEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEE
T ss_pred CCCCcE----EEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEE
Confidence 998775 33343 55678888887653 23444 46788899
Q ss_pred EEECCCCe----------------EEEEeecCCCCCceeeEEECCCCCEEEEecCCCc-EEEEEcCCceeEEEec-C-Cc
Q 024185 162 VLDAYGGE----------------KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT-LHAWNINTRNEVACWN-G-NI 222 (271)
Q Consensus 162 ~~d~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~-~-~~ 222 (271)
+||+++++ .+..+..|... |.+++|+|+|++|++|+.|++ |++||+++++.+..+. + |.
T Consensus 163 iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~--v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~ 240 (355)
T 3vu4_A 163 ITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNP--IKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDR 240 (355)
T ss_dssp EEECCC------------------CCEEECCCSSC--EEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCC
T ss_pred EEECCCCCccccccccccccccCcccEEEEccCCc--eEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 99988765 15667777765 999999999999999999998 9999999999999998 5 99
Q ss_pred ceeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 223 GVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
..|.+++|+|++++|++++ +.|++||++...
T Consensus 241 ~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 241 ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp SCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred CcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 9999999999999999998 889999998754
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-30 Score=211.33 Aligned_cols=206 Identities=12% Similarity=0.117 Sum_probs=175.0
Q ss_pred EEcccccceEEeeEEec-CCchhhhhhhhhhccCceEEEEEecCcceeEEEe-------------cC--CcceEEEcC-C
Q 024185 39 EFFATSKGIRRGLFLSA-CLQLMIALCLVLLTTALEYGIFVLMLASFQGILR-------------LR--GRPTVAFDQ-Q 101 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~--~~~~~~~~~-~ 101 (271)
..+.+|.+.|.+++|+| ++++ +++++.||.|++||+++++....+. +| .+.+++|+| +
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~-----l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 111 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRY-----MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD 111 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCE-----EEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred eeeeccCCcEEEEEEecCCCCE-----EEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC
Confidence 45788999999999999 9998 8899999999999999876554442 23 467799999 7
Q ss_pred CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC---CcEEEEEecCCeEEEEECCCCeEEEEeecCC
Q 024185 102 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP 178 (271)
Q Consensus 102 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 178 (271)
+++|++++.||.|++||+.+++. ...+ .+...+.++.|+|. +.++++++.|+.|++||+++++.+..+..|.
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 186 (408)
T 4a11_B 112 TGMFTSSSFDKTLKVWDTNTLQT----ADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR 186 (408)
T ss_dssp TTCEEEEETTSEEEEEETTTTEE----EEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCC
T ss_pred CcEEEEEeCCCeEEEeeCCCCcc----ceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCC
Confidence 78999999999999999998764 3333 26678999999994 4599999999999999999999888888777
Q ss_pred CCCceeeEEECCCCC-EEEEecCCCcEEEEEcCCce-eEEEe---------------cCCcceeEEEEEecCCcEEEEeC
Q 024185 179 SPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTRN-EVACW---------------NGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 179 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~---------------~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
.. +.+++|+|+++ .+++++.||.|++||++++. .+..+ .+|...|.+++|+|++++|++++
T Consensus 187 ~~--v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 187 QE--ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp SC--EEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred Cc--EEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 65 99999999998 58899999999999998765 44444 56888999999999999999997
Q ss_pred --CeEEEEcCCCCCCCc
Q 024185 242 --SVLSFWIPNPSSNST 256 (271)
Q Consensus 242 --~~v~iw~~~~~~~~~ 256 (271)
+.+++||+.+++...
T Consensus 265 ~dg~i~vwd~~~~~~~~ 281 (408)
T 4a11_B 265 TDNRMRLWNSSNGENTL 281 (408)
T ss_dssp TTSCEEEEETTTCCBCC
T ss_pred CCCeEEEEECCCCccce
Confidence 889999999876543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-30 Score=222.38 Aligned_cols=225 Identities=14% Similarity=0.109 Sum_probs=178.7
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecC--------------------------------
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSAC-------------------------------- 56 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------------------------------- 56 (271)
|....++.+..++.+..++...+ ..+..+.+|.+.+.++.+ |+
T Consensus 307 ~~~~~l~~~~~~g~i~~~d~~~~----~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~ 381 (615)
T 1pgu_A 307 TGNGRIISLSLDGTLNFYELGHD----EVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS 381 (615)
T ss_dssp EETTEEEEEETTSCEEEEETTEE----EEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECC
T ss_pred CCCCeEEEEECCCCEEEEECCCC----cEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEEC
Confidence 45566777777888888886554 333345555554444444 32
Q ss_pred -CchhhhhhhhhhccCceEEEEEecC----------------------------------cceeEEEec-CCcceEEEcC
Q 024185 57 -LQLMIALCLVLLTTALEYGIFVLML----------------------------------ASFQGILRL-RGRPTVAFDQ 100 (271)
Q Consensus 57 -~~~~~~~~l~s~~~dg~i~iwd~~~----------------------------------~~~~~~~~~-~~~~~~~~~~ 100 (271)
+.. +++++.|+.+++||+.+ ++.+..+.. ..+.+++|+
T Consensus 382 ~~~~-----l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 455 (615)
T 1pgu_A 382 KAQE-----YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS- 455 (615)
T ss_dssp STTC-----CEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC-
T ss_pred CCcE-----EEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc-
Confidence 444 67888888888888753 233333332 235567887
Q ss_pred CCCEEEEEec-CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeec-CC
Q 024185 101 QGLVFAVAME-AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-EP 178 (271)
Q Consensus 101 ~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~ 178 (271)
++++++++. |+.|++||+.+++. . ...+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.. |.
T Consensus 456 -~~~l~~~~~~d~~i~~~~~~~~~~--~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~ 531 (615)
T 1pgu_A 456 -QNYVAVGLEEGNTIQVFKLSDLEV--S-FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRT 531 (615)
T ss_dssp -SSEEEEEETTTSCEEEEETTEEEE--E-EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCS
T ss_pred -CCEEEEeecCCCeEEEEECCCccc--c-ccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCC
Confidence 889999999 99999999987653 1 156778999999999999999999999999999999999999888776 66
Q ss_pred CCCceeeEEECC----------CCCEEEEecCCCcEEEEEcCCc-eeEEEecCCcceeEEEEEecCCcEEEEeC--CeEE
Q 024185 179 SPNTNTEATFTP----------DGQYVVSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLS 245 (271)
Q Consensus 179 ~~~~v~~~~~~~----------~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~ 245 (271)
.. +.+++|+| ++++|++++.||.|++||+.++ +.+..+.+|...|.+++|+|+++ |++++ +.|+
T Consensus 532 ~~--v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~ 608 (615)
T 1pgu_A 532 SK--INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIK 608 (615)
T ss_dssp SC--EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEE
T ss_pred Cc--eeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEE
Confidence 55 99999999 9999999999999999999998 78889999999999999999999 88887 8899
Q ss_pred EEcCCC
Q 024185 246 FWIPNP 251 (271)
Q Consensus 246 iw~~~~ 251 (271)
+|++++
T Consensus 609 iw~~~~ 614 (615)
T 1pgu_A 609 RWNVVL 614 (615)
T ss_dssp EEEEC-
T ss_pred EEeeec
Confidence 999875
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.6e-30 Score=211.30 Aligned_cols=225 Identities=13% Similarity=0.164 Sum_probs=192.7
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
.+.++.+..++.+..++...+ .....+.+|.+.+.++.++ ++. +++++.||+|++||+++++.+..+.+
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~--~~~-----l~s~~~dg~i~vwd~~~~~~~~~~~~ 197 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTG----KCLRTLVGHTGGVWSSQMR--DNI-----IISGSTDRTLKVWNAETGECIHTLYG 197 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC----CEEEECCCCSSCEEEEEEE--TTE-----EEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCEEEEEECCCcEEEEECCCC----cEEEEEcCCCCCEEEEEec--CCE-----EEEEeCCCeEEEEECCcCcEEEEECC
Confidence 455666778999999998777 4556688999999999998 345 78999999999999999999999988
Q ss_pred CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 91 RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
|.....++..+++.+++++.||.|++||+.+++. ...+.+|...+.+++| +++++++++.|+.|++||+++++.
T Consensus 198 h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~ 271 (445)
T 2ovr_B 198 HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC----LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETC 271 (445)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE----EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEE
T ss_pred CCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcE----EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcE
Confidence 8644433333577899999999999999998875 6667789999999999 788999999999999999999999
Q ss_pred EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEc
Q 024185 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 248 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~ 248 (271)
+..+..|... +.+++| +++++++++.||.|++||+++++.+..+.+|...+.++.++ ++++++++ |.|++||
T Consensus 272 ~~~~~~~~~~--v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 272 LHTLQGHTNR--VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWD 345 (445)
T ss_dssp EEEECCCSSC--EEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred eEEecCCCCc--eEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEE
Confidence 9999877765 888888 88999999999999999999999999999999999888775 66888887 8899999
Q ss_pred CCCCCCCcCC
Q 024185 249 PNPSSNSTDE 258 (271)
Q Consensus 249 ~~~~~~~~~~ 258 (271)
+++++.....
T Consensus 346 ~~~~~~~~~~ 355 (445)
T 2ovr_B 346 IKTGQCLQTL 355 (445)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCcEEEEE
Confidence 9888765444
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-30 Score=215.11 Aligned_cols=206 Identities=14% Similarity=0.187 Sum_probs=173.7
Q ss_pred EEcccccceEEeeEEecC-CchhhhhhhhhhccCceEEEEEecC----------cceeEEEecCC--cceEEEcCCCC-E
Q 024185 39 EFFATSKGIRRGLFLSAC-LQLMIALCLVLLTTALEYGIFVLML----------ASFQGILRLRG--RPTVAFDQQGL-V 104 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~-~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~--~~~~~~~~~~~-~ 104 (271)
.....|.+.+.+++++|+ +.+ +++++.||.|++||+.+ .+....+.+|. +.+++|+|+++ +
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~-----lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 196 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACV-----IATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGY 196 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEE-----EEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTE
T ss_pred EEEEcCCCcEEEEEECCCCCcE-----EEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCe
Confidence 345578899999999998 455 78999999999999987 56677777775 56799999998 9
Q ss_pred EEEEecCCeEEEEeCCCCCCCcc---eEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCCC---eEEEEeecC
Q 024185 105 FAVAMEAGAIKLFDSRSYDKGPF---DTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGG---EKRCGFSLE 177 (271)
Q Consensus 105 l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~ 177 (271)
|++++.||.|++||+........ ....+.+|...|.+++|+| ++..|++++.|+.|++||++++ +....+..|
T Consensus 197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence 99999999999999987432111 1344668999999999999 7788999999999999999987 566667666
Q ss_pred CCCCceeeEEECCCCC-EEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEEEecCCc-EEEEeC--CeEEEEcCCC
Q 024185 178 PSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 178 ~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~~v~iw~~~~ 251 (271)
... +.+++|+|+++ ++++|+.||.|++||+++ +.++..+..|...|.+++|+|+++ +|++++ +.|++||+..
T Consensus 277 ~~~--v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 277 TAE--VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp SSC--EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred CCC--eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 655 99999999987 688999999999999998 567888999999999999999985 577776 8899999987
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-29 Score=206.28 Aligned_cols=222 Identities=12% Similarity=0.139 Sum_probs=186.8
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
+.++.+..++.+..++...+ .....+.+|...+.++.+ ++.. +++++.||.|++||+++++.+..+.+|
T Consensus 210 ~~l~s~s~dg~i~~wd~~~~----~~~~~~~~~~~~v~~~~~--~~~~-----l~~~~~dg~i~iwd~~~~~~~~~~~~~ 278 (445)
T 2ovr_B 210 KRVVSGSRDATLRVWDIETG----QCLHVLMGHVAAVRCVQY--DGRR-----VVSGAYDFMVKVWDPETETCLHTLQGH 278 (445)
T ss_dssp TEEEEEETTSEEEEEESSSC----CEEEEEECCSSCEEEEEE--CSSC-----EEEEETTSCEEEEEGGGTEEEEEECCC
T ss_pred CEEEEEeCCCEEEEEECCCC----cEEEEEcCCcccEEEEEE--CCCE-----EEEEcCCCEEEEEECCCCcEeEEecCC
Confidence 45666677899999988766 444557889999998888 6666 889999999999999999999999887
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEE
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 171 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~ 171 (271)
.....++..+++++++++.||.|++||+++++. ...+.+|...+.++.++ ++++++++.||.|++||+++++.+
T Consensus 279 ~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~ 352 (445)
T 2ovr_B 279 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC----IHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCL 352 (445)
T ss_dssp SSCEEEEEECSSEEEEEETTSCEEEEETTTCCE----EEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEE
T ss_pred CCceEEEEECCCEEEEEeCCCeEEEEECCCCCE----EEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEE
Confidence 644433333899999999999999999998875 66778899999988875 569999999999999999999999
Q ss_pred EEeecCC-CCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEe-----cCCcceeEEEEEecCCcEEEEeC--Ce
Q 024185 172 CGFSLEP-SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-----NGNIGVVACLKWAPRRAMFVAAS--SV 243 (271)
Q Consensus 172 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~--~~ 243 (271)
..+..+. +...+.+++|+ ++++++|+.||.|++||+.+++.+..+ .+|.+.|.+++|+|++.++++++ |+
T Consensus 353 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 353 QTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp EEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred EEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 8887632 22459889985 579999999999999999999998888 46788999999999999999997 65
Q ss_pred ----EEEEcCCCC
Q 024185 244 ----LSFWIPNPS 252 (271)
Q Consensus 244 ----v~iw~~~~~ 252 (271)
+.+||++..
T Consensus 431 ~~~~l~v~df~~~ 443 (445)
T 2ovr_B 431 EETKLLVLDFDVD 443 (445)
T ss_dssp SCCEEEEEECCCC
T ss_pred CccEEEEEECCCC
Confidence 999998764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-30 Score=211.06 Aligned_cols=192 Identities=12% Similarity=0.134 Sum_probs=158.7
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-------cceEEEcCCCCEEEEEecCCeEE
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-------RPTVAFDQQGLVFAVAMEAGAIK 115 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~d~~i~ 115 (271)
.|...|.+++|||+|+. +|+++.||.+++||.++ .+..+. |. +.+++|||||++|++|+.||+|+
T Consensus 83 ~~~~~V~~vawSPdG~~-----LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDW-----MAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SCSCCEEEEEECSSSSC-----EEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred CCCCcEEEEEECCCCCE-----EEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 44778999999999999 89999999999999544 555555 43 66799999999999999999999
Q ss_pred EEeCCCCCCCc---ceEEEe----cCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE---EEEee-cCCCCCcee
Q 024185 116 LFDSRSYDKGP---FDTFLV----GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK---RCGFS-LEPSPNTNT 184 (271)
Q Consensus 116 i~d~~~~~~~~---~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~-~~~~~~~v~ 184 (271)
+||+.++.... .....+ .+|...|.+++|+||| +++++.|+.+++||+.+++. .+++. .|.. .|.
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~--~V~ 230 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR--KIT 230 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS--CCC
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccC--cEE
Confidence 99998865211 123443 6788899999999999 88889999999999988773 34553 4544 499
Q ss_pred eEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEE--ecCCcEEEEeC--CeEEEEcCC
Q 024185 185 EATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW--APRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 185 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~--~~v~iw~~~ 250 (271)
+++|+ |+.+++++ ++.|++||+.+++......+|.+.|..++| +||+..+++++ |+ ++|..+
T Consensus 231 svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 231 DLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99999 68899887 699999999988874444489999999999 99999999998 77 999976
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=201.11 Aligned_cols=223 Identities=11% Similarity=0.085 Sum_probs=185.2
Q ss_pred ecce-eEEeeecceeeEEEEe-eccceeeEEEEEccc--ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC---
Q 024185 9 PITQ-ALLFARQNIILILLES-LCGIYQCMIIEFFAT--SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML--- 81 (271)
Q Consensus 9 ~~~~-~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~--- 81 (271)
|... .++.+..++.+..++. ..+.. ..+.. |...+.++.|+| +.. +++++.|+.|++||+++
T Consensus 66 ~~~~~~l~~~~~dg~i~~wd~~~~~~~-----~~~~~~~~~~~v~~l~~~~-~~~-----l~s~~~d~~i~iwd~~~~~~ 134 (342)
T 1yfq_A 66 DNTDLQIYVGTVQGEILKVDLIGSPSF-----QALTNNEANLGICRICKYG-DDK-----LIAASWDGLIEVIDPRNYGD 134 (342)
T ss_dssp ESSSEEEEEEETTSCEEEECSSSSSSE-----EECBSCCCCSCEEEEEEET-TTE-----EEEEETTSEEEEECHHHHTT
T ss_pred CCCCcEEEEEcCCCeEEEEEeccCCce-----EeccccCCCCceEEEEeCC-CCE-----EEEEcCCCeEEEEccccccc
Confidence 4445 6777788999999987 65522 44777 999999999999 777 88999999999999987
Q ss_pred ------cceeEEEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCC-CCCCcceEEEecCCccceEEEEEcC-CCcEEE
Q 024185 82 ------ASFQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRS-YDKGPFDTFLVGGDTAEVCDIKFSN-DGKSML 152 (271)
Q Consensus 82 ------~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 152 (271)
++.+..+... .+.+++|+|++ +++++.++.|++||+++ ... ........|...+.+++|+| ++++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~~l~ 210 (342)
T 1yfq_A 135 GVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD--NGTIEESGLKYQIRDVALLPKEQEGYA 210 (342)
T ss_dssp BCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC--CCEEEECSCSSCEEEEEECSGGGCEEE
T ss_pred ccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc--cceeeecCCCCceeEEEECCCCCCEEE
Confidence 6666655522 46679999887 99999999999999988 543 12334557888999999999 999999
Q ss_pred EEecCCeEEEEECCCC------eEEEEeecCCC-------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec
Q 024185 153 LTTTNNNIYVLDAYGG------EKRCGFSLEPS-------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 153 ~~~~d~~i~~~d~~~~------~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 219 (271)
+++.||.+++||++.. +....+..+.. ...+.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 211 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred EEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh
Confidence 9999999999999876 67777777754 2359999999999999999999999999999999999999
Q ss_pred CC-cceeEEEEEecCCcEEEEeC--Ce-EEEEc
Q 024185 220 GN-IGVVACLKWAPRRAMFVAAS--SV-LSFWI 248 (271)
Q Consensus 220 ~~-~~~v~~~~~s~~~~~l~~~~--~~-v~iw~ 248 (271)
+| ...|.+++ |++++|++++ |. .+.|.
T Consensus 291 ~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 291 KFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 98 99999999 9999999998 65 44443
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-29 Score=223.72 Aligned_cols=229 Identities=10% Similarity=0.130 Sum_probs=181.6
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++.+..++.+.+|+.... ..... ..|...|.+++|+| +++ |++++.|++|++||+++++.+..+
T Consensus 27 pdg~~lAsgs~Dg~I~lw~~~~~----~~~~~-~~~~~~V~~l~fsp-g~~-----L~S~s~D~~v~lWd~~~~~~~~~~ 95 (902)
T 2oaj_A 27 FTQNLLAIATVTGEVHIYGQQQV----EVVIK-LEDRSAIKEMRFVK-GIY-----LVVINAKDTVYVLSLYSQKVLTTV 95 (902)
T ss_dssp TTTTEEEEEETTSEEEEECSTTC----EEEEE-CSSCCCEEEEEEET-TTE-----EEEEETTCEEEEEETTTCSEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEeCCCc----EEEEE-cCCCCCEEEEEEcC-CCE-----EEEEECcCeEEEEECCCCcEEEEE
Confidence 45566777788999999876544 22222 34678899999999 776 889999999999999999988888
Q ss_pred ecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceE-------EEecCCccceEEEEEcCC-CcEEEEEecCCe
Q 024185 89 RLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT-------FLVGGDTAEVCDIKFSND-GKSMLLTTTNNN 159 (271)
Q Consensus 89 ~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~ 159 (271)
..+ .+.+++|+|++++|++|+.||.|++||+++++...+.. ..+.+|.+.|.+++|+|+ +..+++++.|+.
T Consensus 96 ~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~ 175 (902)
T 2oaj_A 96 FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVT 175 (902)
T ss_dssp ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCE
T ss_pred cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCc
Confidence 644 46779999999999999999999999998766311111 234678999999999996 578999999999
Q ss_pred EEEEECCCCeEEEEeecCC----------------CCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEE--e---
Q 024185 160 IYVLDAYGGEKRCGFSLEP----------------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC--W--- 218 (271)
Q Consensus 160 i~~~d~~~~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~--- 218 (271)
| +||+++++.++.+..+. +...|.+++|+|+|++|++++.||.|++||+++++++.. +
T Consensus 176 v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~ 254 (902)
T 2oaj_A 176 L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFET 254 (902)
T ss_dssp E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCS
T ss_pred E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeeccc
Confidence 9 99999999988887551 113499999999999999999999999999999988764 2
Q ss_pred cC-------------CcceeEEEEEec----CC-cEEEEeC-C------eEEEEcC
Q 024185 219 NG-------------NIGVVACLKWAP----RR-AMFVAAS-S------VLSFWIP 249 (271)
Q Consensus 219 ~~-------------~~~~v~~~~~s~----~~-~~l~~~~-~------~v~iw~~ 249 (271)
.. |...|.+++|++ ++ .++++++ . .+++|++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 255 EINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp CTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred ccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 11 345799999964 43 5677774 2 6888884
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=199.60 Aligned_cols=210 Identities=15% Similarity=0.118 Sum_probs=159.1
Q ss_pred EcccccceEEeeEEecCCchhhh------hhhhhhccCceEEEEEecCcceeEE----Eec-----C--CcceEEEcCCC
Q 024185 40 FFATSKGIRRGLFLSACLQLMIA------LCLVLLTTALEYGIFVLMLASFQGI----LRL-----R--GRPTVAFDQQG 102 (271)
Q Consensus 40 ~~~~~~~~v~~~~~s~~~~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~----~~~-----~--~~~~~~~~~~~ 102 (271)
.+.+|...+.+++++++ .++. ..+++++.|+.+++|++.+...... ... + .+.+++|+|||
T Consensus 68 ~l~~~~~~v~s~~~~~~--~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASKG--IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEETT--EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeCCC--EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 46677777777766543 1110 1177899999999999876542211 111 1 14569999999
Q ss_pred CEEEEEe--cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC
Q 024185 103 LVFAVAM--EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP 180 (271)
Q Consensus 103 ~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 180 (271)
+++++++ .|++|++||+++++. ...+. |...|.+++|+|||+++++++.+ .+.+|+..+++.+.......+.
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~~~----~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~ 219 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDLTE----KFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKN 219 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTTEE----EEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTT
T ss_pred CEEEEEECCCCCEEEEeECCCCcE----EEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCC
Confidence 9987654 689999999998775 44444 77889999999999999998855 5677777777766544333333
Q ss_pred CceeeEEECCCCCEEEEecCCC----cEEEEEcCCcee----EEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 181 NTNTEATFTPDGQYVVSGSGDG----TLHAWNINTRNE----VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 181 ~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
..+.+++|+|+++++++++.|+ .++.|++..... ...+.+|...|++++|+|||++||+|+ +.|+|||++
T Consensus 220 ~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~ 299 (365)
T 4h5i_A 220 WSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLK 299 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred CCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECC
Confidence 4599999999999999998877 688899876554 345678999999999999999999998 889999999
Q ss_pred CCCCCcC
Q 024185 251 PSSNSTD 257 (271)
Q Consensus 251 ~~~~~~~ 257 (271)
+++++..
T Consensus 300 ~~~~~~~ 306 (365)
T 4h5i_A 300 DLSMSKI 306 (365)
T ss_dssp TTEEEEE
T ss_pred CCcEEEE
Confidence 9887654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-29 Score=205.37 Aligned_cols=228 Identities=8% Similarity=-0.053 Sum_probs=180.8
Q ss_pred ecceeE-EeeecceeeEEEEee--ccceeeEEEEEcc--cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc
Q 024185 9 PITQAL-LFARQNIILILLESL--CGIYQCMIIEFFA--TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS 83 (271)
Q Consensus 9 ~~~~~l-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 83 (271)
|....| +.+..++.+.+|+.. .+. ..+.+. .+...+.+++|+|+++. |++++.+|.+++|++.+++
T Consensus 112 ~d~~~l~~~~~~dg~v~iwd~~~~~~~----~~~~~~~~~~~~~v~~~~~sp~~~~-----l~~~~~~g~v~~~~~~~~~ 182 (450)
T 2vdu_B 112 SDESRLIACADSDKSLLVFDVDKTSKN----VLKLRKRFCFSKRPNAISIAEDDTT-----VIIADKFGDVYSIDINSIP 182 (450)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECSSSSS----CEEEEEEEECSSCEEEEEECTTSSE-----EEEEETTSEEEEEETTSCC
T ss_pred CCCCEEEEEECCCCeEEEEECcCCCCc----eeeeeecccCCCCceEEEEcCCCCE-----EEEEeCCCcEEEEecCCcc
Confidence 334454 445568999999887 442 222233 56688999999999998 8899999999999998876
Q ss_pred eeE----EEecCC--cceEEEcCC---CCEEEEEecCCeEEEEeCCCCCCCcceEEE-ecCCccceEEEEEcCCCcEEEE
Q 024185 84 FQG----ILRLRG--RPTVAFDQQ---GLVFAVAMEAGAIKLFDSRSYDKGPFDTFL-VGGDTAEVCDIKFSNDGKSMLL 153 (271)
Q Consensus 84 ~~~----~~~~~~--~~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~ 153 (271)
... .+.+|. +.+++|+|+ +++|++++.|+.|++||+.+++. ... +.+|...|.+++|+ ++++|++
T Consensus 183 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~----~~~~~~~h~~~v~~~~~s-d~~~l~s 257 (450)
T 2vdu_B 183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI----VDKWLFGHKHFVSSICCG-KDYLLLS 257 (450)
T ss_dssp CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC----EEEECCCCSSCEEEEEEC-STTEEEE
T ss_pred cccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce----eeeeecCCCCceEEEEEC-CCCEEEE
Confidence 543 566664 677999999 99999999999999999998775 433 56899999999999 9999999
Q ss_pred EecCCeEEEEECCCCeEEEEeecC-----------------------CCCCceeeEEECCCCCEEEEec-CCCcEEEEEc
Q 024185 154 TTTNNNIYVLDAYGGEKRCGFSLE-----------------------PSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNI 209 (271)
Q Consensus 154 ~~~d~~i~~~d~~~~~~~~~~~~~-----------------------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~ 209 (271)
++.|+.|++||+++++.+..+..+ .....+.+++|+|+++++++++ .++.|++|++
T Consensus 258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 999999999999999988877632 1124588999999999999998 8999999999
Q ss_pred --CCc---eeEEEecCCcceeEEEEEecCCcEEEEeC--------CeEEEEcCCC
Q 024185 210 --NTR---NEVACWNGNIGVVACLKWAPRRAMFVAAS--------SVLSFWIPNP 251 (271)
Q Consensus 210 --~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--------~~v~iw~~~~ 251 (271)
.++ +.+..+..| ..|.+++|+|++.++++++ +.|.+|.++.
T Consensus 338 ~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 338 SEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp CSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 555 677788887 7899999999654444433 1278887643
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-27 Score=193.52 Aligned_cols=229 Identities=12% Similarity=0.085 Sum_probs=182.0
Q ss_pred ceeEEeee-cceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 11 TQALLFAR-QNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 11 ~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
...++++. .++.+..++...+ .....+..+. .+.+++|+|+++.+ +++++.++.|++||+++++.+..+.
T Consensus 43 g~~l~~~~~~d~~i~v~d~~~~----~~~~~~~~~~-~v~~~~~spdg~~l----~~~~~~~~~v~v~d~~~~~~~~~~~ 113 (391)
T 1l0q_A 43 GTKVYVANAHSNDVSIIDTATN----NVIATVPAGS-SPQGVAVSPDGKQV----YVTNMASSTLSVIDTTSNTVAGTVK 113 (391)
T ss_dssp SSEEEEEEGGGTEEEEEETTTT----EEEEEEECSS-SEEEEEECTTSSEE----EEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEECCCCCeEEEEECCCC----eEEEEEECCC-CccceEECCCCCEE----EEEECCCCEEEEEECCCCeEEEEEe
Confidence 34454443 6788888887666 3334455444 78899999999973 2466778999999999999888887
Q ss_pred cCC-cceEEEcCCCCEE-EEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEE-EEEecCCeEEEEECC
Q 024185 90 LRG-RPTVAFDQQGLVF-AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM-LLTTTNNNIYVLDAY 166 (271)
Q Consensus 90 ~~~-~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~~~d~~ 166 (271)
.+. +..++|+|+++++ ++++.++.|++||+.+++. ...+..+ ..+.+++|+|+++++ ++++.++.|++||++
T Consensus 114 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~----~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~ 188 (391)
T 1l0q_A 114 TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV----INTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTV 188 (391)
T ss_dssp CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE----EEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 654 5669999999977 6777799999999988764 3444444 557999999999888 566778999999999
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEec---CCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEE-EEeC-
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS---GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMF-VAAS- 241 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~- 241 (271)
+++....+..+. .+.+++|+|+++++++++ .++.|++||+++++.+..+..|.. +.+++|+|+++++ ++++
T Consensus 189 ~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~ 264 (391)
T 1l0q_A 189 TNSVIDTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSF 264 (391)
T ss_dssp TTEEEEEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETT
T ss_pred CCeEEEEEecCC---CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCC
Confidence 998887776433 388899999999999887 689999999999999998887654 7899999999877 4555
Q ss_pred -CeEEEEcCCCCCCCcC
Q 024185 242 -SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 242 -~~v~iw~~~~~~~~~~ 257 (271)
+.|++||+.+++....
T Consensus 265 d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 265 XNTVSVIDTATNTITAT 281 (391)
T ss_dssp TTEEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCCcEEEE
Confidence 8899999998766543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=208.43 Aligned_cols=191 Identities=8% Similarity=-0.022 Sum_probs=146.5
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCC
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSR 120 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 120 (271)
+.+|.+.+.+++|+|+| .++.+.+|+.+.......-....+.+++|+|+|++||+++.||.|++||.+
T Consensus 48 l~gh~~~v~~V~FsPdg------------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~ 115 (588)
T 2j04_A 48 INCNSKNLFHVKEFPLE------------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN 115 (588)
T ss_dssp CSSBGGGTEEEEEECCC------------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT
T ss_pred ecCCCccEEEEEECCCC------------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 46788888888888876 234444454432221111123346779999999999999999999999954
Q ss_pred CCCCCcceEEEecCCcc-----ceEEEEEcCCCcEEEEEecCCeEEEEECCCCe-------EEEEeecCC--CCCceeeE
Q 024185 121 SYDKGPFDTFLVGGDTA-----EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-------KRCGFSLEP--SPNTNTEA 186 (271)
Q Consensus 121 ~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-------~~~~~~~~~--~~~~v~~~ 186 (271)
+ . ...+. |.. .+.+++|||||++|++|+.||+|++||+.+++ .+.++..+. +...|.++
T Consensus 116 ~--~----l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sV 188 (588)
T 2j04_A 116 K--M----LTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHI 188 (588)
T ss_dssp E--E----EEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEE
T ss_pred c--e----eeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEE
Confidence 4 2 33345 554 59999999999999999999999999998875 256653222 22469999
Q ss_pred EECCCCCEEEEecCCCcEEEEEcCCcee---EEEe-cCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCC
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNINTRNE---VACW-NGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSN 254 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~-~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~ 254 (271)
+|+||| +++++.|+++++||+.+++. .+++ .+|...|.+++|+ |..|++++ +.|++||+.+++.
T Consensus 189 awSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 189 VWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSI 257 (588)
T ss_dssp EEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEE
T ss_pred EEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeE
Confidence 999999 78888899999999988773 3566 4788899999999 57888887 9999999998776
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-27 Score=193.16 Aligned_cols=222 Identities=12% Similarity=0.100 Sum_probs=179.8
Q ss_pred eecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-Ccce
Q 024185 17 ARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-GRPT 95 (271)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~ 95 (271)
+..++.+..++...+ .....+.++.. +.+++|+|+++.+ +++++.|+.|++||+++++.+..+..+ .+..
T Consensus 8 ~~~d~~v~v~d~~~~----~~~~~~~~~~~-~~~~~~s~dg~~l----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~ 78 (391)
T 1l0q_A 8 NSESDNISVIDVTSN----KVTATIPVGSN-PMGAVISPDGTKV----YVANAHSNDVSIIDTATNNVIATVPAGSSPQG 78 (391)
T ss_dssp ETTTTEEEEEETTTT----EEEEEEECSSS-EEEEEECTTSSEE----EEEEGGGTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred cCCCCEEEEEECCCC----eEEEEeecCCC-cceEEECCCCCEE----EEECCCCCeEEEEECCCCeEEEEEECCCCccc
Confidence 345789999988776 44445666654 7889999999873 357789999999999999998888765 4566
Q ss_pred EEEcCCCCEEEEEe-cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEE-EEEecCCeEEEEECCCCeEEEE
Q 024185 96 VAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM-LLTTTNNNIYVLDAYGGEKRCG 173 (271)
Q Consensus 96 ~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~~~d~~~~~~~~~ 173 (271)
++|+|++++|++++ .++.|++||+.+++. ...+.. ...+.+++|+|+++.+ ++++.++.|++||+++++.+..
T Consensus 79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~----~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 153 (391)
T 1l0q_A 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTV----AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT 153 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eEECCCCCEEEEEECCCCEEEEEECCCCeE----EEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 99999999886554 569999999998764 333433 4578999999999987 5777799999999999998888
Q ss_pred eecCCCCCceeeEEECCCCCEE-EEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-----CeEEEE
Q 024185 174 FSLEPSPNTNTEATFTPDGQYV-VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFW 247 (271)
Q Consensus 174 ~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~v~iw 247 (271)
+..+.. +.+++|+|+++++ ++++.++.|++||+++++....+. +...+.+++|+|+++++++++ +.|++|
T Consensus 154 ~~~~~~---~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 154 VSVGRS---PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp EECCSS---EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred EecCCC---cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence 776543 7889999999987 577788999999999999888876 455789999999999887764 679999
Q ss_pred cCCCCCCCc
Q 024185 248 IPNPSSNST 256 (271)
Q Consensus 248 ~~~~~~~~~ 256 (271)
|+.+++...
T Consensus 230 d~~~~~~~~ 238 (391)
T 1l0q_A 230 DTGTNKITA 238 (391)
T ss_dssp ETTTTEEEE
T ss_pred ECCCCeEEE
Confidence 998876543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-28 Score=195.54 Aligned_cols=220 Identities=11% Similarity=0.112 Sum_probs=166.3
Q ss_pred eeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc-ceeEEEecCCcc
Q 024185 16 FARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA-SFQGILRLRGRP 94 (271)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~ 94 (271)
.+..++.+.+|+...+ ..+..+. +...+.++.++++... ...|+.|++||+.++ +.+..+.. ...
T Consensus 76 ~~~~d~~v~iWd~~~~----~~~~~~~-~~~~v~~v~~~~~~~~--------~~~~~~i~i~d~~~~~~~~~~~~~-~~~ 141 (355)
T 3vu4_A 76 VTGVKEVVHIWDDVKK----QDVSRIK-VDAPVKDLFLSREFIV--------VSYGDVISVFKFGNPWKRITDDIR-FGG 141 (355)
T ss_dssp ECSSTTEEEEEETTTT----EEEEEEE-CSSCEEEEEECSSEEE--------EEETTEEEEEESSTTCCBSSCCEE-EEE
T ss_pred EECCccEEEEEECCCC----cEEEEEE-CCCceEEEEEcCCEEE--------EEEcCEEEEEECCCCceeeEEecc-CCc
Confidence 3455678888887776 3333344 4567888999887532 235889999999988 66666655 344
Q ss_pred eEEEcCCCCEEEE--EecCCeEEEEeCCCCCC------C-----cce-EEEecCCccceEEEEEcCCCcEEEEEecCCe-
Q 024185 95 TVAFDQQGLVFAV--AMEAGAIKLFDSRSYDK------G-----PFD-TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN- 159 (271)
Q Consensus 95 ~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~------~-----~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~- 159 (271)
.+++++ +++++ |+.+|.|++||+.+++. . ... ...+.+|.+.|.+++|+|+|++|++++.|++
T Consensus 142 ~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~ 219 (355)
T 3vu4_A 142 VCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTI 219 (355)
T ss_dssp EEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSE
T ss_pred eEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCE
Confidence 577887 66666 57899999999987541 0 001 4557899999999999999999999999998
Q ss_pred EEEEECCCCeEEEEee-c-CCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee--EEEec----------------
Q 024185 160 IYVLDAYGGEKRCGFS-L-EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE--VACWN---------------- 219 (271)
Q Consensus 160 i~~~d~~~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~---------------- 219 (271)
|++||+++++.+..+. + |... |.+++|+|++++|++++.|+.|++||++++.. ...+.
T Consensus 220 v~iwd~~~~~~~~~~~~g~h~~~--v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (355)
T 3vu4_A 220 IRVFKTEDGVLVREFRRGLDRAD--VVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN 297 (355)
T ss_dssp EEEEETTTCCEEEEEECTTCCSC--EEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred EEEEECCCCcEEEEEEcCCCCCc--EEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence 9999999999999987 3 5554 99999999999999999999999999976431 11111
Q ss_pred -----CCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 220 -----GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 220 -----~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
.+......++|+||++++++++ |.+++|++..+.
T Consensus 298 ~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 298 FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 1112236789999999999997 889999987654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-27 Score=192.17 Aligned_cols=226 Identities=11% Similarity=0.094 Sum_probs=180.6
Q ss_pred ecceeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 9 PITQALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 9 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
+....++++ ..++.+..++...+ .....+..|...+.+++++|+++.+ +++++.|+.|++||+++++.+..
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~i~~~d~~~~~~~~~ 249 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTL----AYKATVDLTGKWSKILLYDPIRDLV----YCSNWISEDISVIDRKTKLEIRK 249 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTC----CEEEEEECSSSSEEEEEEETTTTEE----EEEETTTTEEEEEETTTTEEEEE
T ss_pred cCCCEEEEEECCCCEEEEEECCCc----eEEEEEcCCCCCeeEEEEcCCCCEE----EEEecCCCcEEEEECCCCcEEEE
Confidence 334445544 45788888887665 3334466788899999999999873 34667899999999999998888
Q ss_pred EecCC-cceEEEcCCCCEEEEEe--------cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEE-EEEecC
Q 024185 88 LRLRG-RPTVAFDQQGLVFAVAM--------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM-LLTTTN 157 (271)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d 157 (271)
+..+. +..++|+|+++++++++ .|+.|++||+.+++. . ....|...+.+++|+|+++.+ ++++.+
T Consensus 250 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~----~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 324 (433)
T 3bws_A 250 TDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL----I-DTIGPPGNKRHIVSGNTENKIYVSDMCC 324 (433)
T ss_dssp CCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE----E-EEEEEEECEEEEEECSSTTEEEEEETTT
T ss_pred ecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE----E-eeccCCCCcceEEECCCCCEEEEEecCC
Confidence 77654 45699999999999887 488999999988763 2 222456689999999999765 555889
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC---------------CCcEEEEEcCCceeEEEecCCc
Q 024185 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG---------------DGTLHAWNINTRNEVACWNGNI 222 (271)
Q Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~ 222 (271)
+.|++||+++++....+.. .. .+.+++|+|+++++++++. ||.|++||+.+++.+..+..+
T Consensus 325 ~~v~v~d~~~~~~~~~~~~-~~--~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~- 400 (433)
T 3bws_A 325 SKIEVYDLKEKKVQKSIPV-FD--KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG- 400 (433)
T ss_dssp TEEEEEETTTTEEEEEEEC-SS--SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-
T ss_pred CEEEEEECCCCcEEEEecC-CC--CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-
Confidence 9999999999998887763 33 3889999999999888776 579999999999999988764
Q ss_pred ceeEEEEEecCCcEEEEeC---CeEEEEcCCC
Q 024185 223 GVVACLKWAPRRAMFVAAS---SVLSFWIPNP 251 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~ 251 (271)
..+.+++|+|+|++|++++ +.|++|+++.
T Consensus 401 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 401 NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 4689999999999888663 8899999864
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-28 Score=187.52 Aligned_cols=176 Identities=11% Similarity=0.082 Sum_probs=129.5
Q ss_pred ceeeEEEEeec-cceeeEEEEEcccccceEEeeEEec---CCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC---
Q 024185 20 NIILILLESLC-GIYQCMIIEFFATSKGIRRGLFLSA---CLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--- 92 (271)
Q Consensus 20 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--- 92 (271)
++.+..++... + +....+..|...+..++|++ ++.. +++++.|++|++||+++++.++++.++.
T Consensus 156 d~~V~~~~~s~dG----~~~~s~~~~~~~v~~l~fs~~~g~~~~-----LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v 226 (356)
T 2w18_A 156 DQQVEVMTFAEDG----GGKENQFLMPPEETILTFAEVQGMQEA-----LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ 226 (356)
T ss_dssp TCEEEEEEECTTS----CEEEEEEECCCSSCEEEEEEEETSTTE-----EEEEETTSEEEEEETTTCCEEEEEECCC---
T ss_pred CCcEEEEEECCCC----ceeeeeccCCCceeeEEeeccCCCCce-----EEEecCCCcEEEEECCCCcEEEEEcCCCcce
Confidence 45555555422 3 22333445666666667776 4555 8899999999999999999999998653
Q ss_pred --cceEEEcCCCCEE------------EEEecCCeEEEEeCCCCCCCcceEEE---ecCCccceEEEEEcCCCcEEEEEe
Q 024185 93 --RPTVAFDQQGLVF------------AVAMEAGAIKLFDSRSYDKGPFDTFL---VGGDTAEVCDIKFSNDGKSMLLTT 155 (271)
Q Consensus 93 --~~~~~~~~~~~~l------------~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~ 155 (271)
+.+++|+|+|+++ ++|+.|++|++||..+++. +.... ..+|...+.+..++ +.++++++
T Consensus 227 ~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~--l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS 302 (356)
T 2w18_A 227 ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS--VGVMLYCLPPGQAGRFLEGDVK--DHCAAAIL 302 (356)
T ss_dssp CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE--EEEEEECCCTTCCCCEEEEEEE--TTEEEEEE
T ss_pred eeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE--EEEEEeeccCCCcceeEccccC--CCEEEEEc
Confidence 3347899999876 5678899999999988764 22221 14666665544444 78899999
Q ss_pred cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEc
Q 024185 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 209 (271)
Q Consensus 156 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 209 (271)
.|++|++||+.+++++.++.+|... .+..++|+|||++|++|+.|++|++||+
T Consensus 303 ~DgTIkIWDl~tGk~l~tL~gH~~~-vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 303 TSGTIAIWDLLLGQCTALLPPVSDQ-HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTSCEEEEETTTCSEEEEECCC--C-CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCcEEEEECCCCcEEEEecCCCCC-eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999999877654 1345899999999999999999999996
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=198.43 Aligned_cols=197 Identities=9% Similarity=0.038 Sum_probs=135.0
Q ss_pred EEecCCchhhhhhhhhhccCceEEEEEecCcceeE-----EEecCC--cceEEEcC--------CCCEEEEEecCCeEEE
Q 024185 52 FLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG-----ILRLRG--RPTVAFDQ--------QGLVFAVAMEAGAIKL 116 (271)
Q Consensus 52 ~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~--~~~~~~~~--------~~~~l~~~~~d~~i~i 116 (271)
.+++++.. +++++.|++|++||.++++... .+.+|. +.+++|+| |+++|++++.|++|++
T Consensus 96 ~~~~~~~~-----las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~ 170 (393)
T 4gq1_A 96 SSPVYSLF-----LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLII 170 (393)
T ss_dssp -CCEEEEE-----EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE
T ss_pred ecCCCCCE-----EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEE
Confidence 34444555 8899999999999999886543 235564 67799987 7899999999999999
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCc-EEEEEecCCeEEEEECCCCeEEEEeecC------------------
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLE------------------ 177 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~------------------ 177 (271)
||++++.. ...+.+|...+.+++|+|++. +|++++.|++|++||+++++.......+
T Consensus 171 Wd~~~~~~----~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 171 WRLTDEGP----ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEETTEE----EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred EECCCCce----eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 99987664 555667889999999999874 7999999999999999887654332211
Q ss_pred -----CCCCceeeEEEC-CCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEec-------------------
Q 024185 178 -----PSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP------------------- 232 (271)
Q Consensus 178 -----~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~------------------- 232 (271)
.....+.++.|+ ||++.+++++.|+.+++||+.+++....+..|...+..+.+.|
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 111346778875 8999999999999999999998877776665554444443333
Q ss_pred -CCcEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 233 -RRAMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 233 -~~~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
++.++++++ +.|++||+.+++....
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~ 354 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSI 354 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 334666776 8899999998876543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-26 Score=190.11 Aligned_cols=233 Identities=9% Similarity=0.062 Sum_probs=183.3
Q ss_pred ceeEEeee-cceeeEEEEeeccceeeE-EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 11 TQALLFAR-QNIILILLESLCGIYQCM-IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 11 ~~~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
...++++. .++.+..++...+..... ....+.+|.+.+.+++++|++.. +++++.|+.|++||+++++.+..+
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~s~~~d~~v~~~d~~~~~~~~~~ 207 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNEL-----WVSQMQANAVHVFDLKTLAYKATV 207 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEE-----EEEEGGGTEEEEEETTTCCEEEEE
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEE-----EEEECCCCEEEEEECCCceEEEEE
Confidence 44555554 356788888766532210 00035578889999999999988 889999999999999999988888
Q ss_pred ecCC--cceEEEcCCCCEEEEEe-cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe--------cC
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT--------TN 157 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--------~d 157 (271)
..+. +.+++|+|+++++++++ .++.|++||+++++. ...+.. ...+.+++|+|+++++++++ .|
T Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~----~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~d 282 (433)
T 3bws_A 208 DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE----IRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGG 282 (433)
T ss_dssp ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE----EEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE----EEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCC
Confidence 7654 56699999999886554 789999999987764 444443 45699999999999999888 48
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEE-EEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcE
Q 024185 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV-VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAM 236 (271)
Q Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 236 (271)
+.|++||+++++....+.... .+.+++|+|+++++ ++++.++.|++||+.+++.+..+. +...+.+++|+|++++
T Consensus 283 g~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~ 358 (433)
T 3bws_A 283 GRLGIYSMDKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKY 358 (433)
T ss_dssp EEEEEEETTTTEEEEEEEEEE---CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSE
T ss_pred CeEEEEECCCCcEEeeccCCC---CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCE
Confidence 899999999998877664322 37889999999755 566889999999999999888886 5677899999999998
Q ss_pred EEEeC-C----------------eEEEEcCCCCCCCcC
Q 024185 237 FVAAS-S----------------VLSFWIPNPSSNSTD 257 (271)
Q Consensus 237 l~~~~-~----------------~v~iw~~~~~~~~~~ 257 (271)
+++++ + .|++||+.+++....
T Consensus 359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~ 396 (433)
T 3bws_A 359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF 396 (433)
T ss_dssp EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE
T ss_pred EEEEecCCCccccccccccccceEEEEEECCCCcEEEE
Confidence 88775 2 899999988765543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=191.07 Aligned_cols=196 Identities=14% Similarity=0.246 Sum_probs=162.5
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec--CC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL--RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYD 123 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 123 (271)
.+.++||+++ . |+ .+.|++|++||.++++..+.+.. |. +.+++|+|+|++|++|+.||.|++||+++++
T Consensus 108 ~~~l~wS~~n-~-----lA-vgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 108 LNLVDWSSGN-V-----LA-VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp CBCEEECTTS-E-----EE-EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred ceeEEECCCC-E-----EE-EEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence 4568888754 3 33 45699999999999998887754 33 6789999999999999999999999999887
Q ss_pred CCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECCCCCEEEEecCCC
Q 024185 124 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 202 (271)
Q Consensus 124 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 202 (271)
. ...+.+|...+.+++++ +..+++++.|+.+++||.+.. ..+..+..|... +..+.++|+++++++++.|+
T Consensus 181 ~----~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~--~~~~~~~~~g~~l~s~~~D~ 252 (420)
T 4gga_A 181 R----LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE--VCGLRWAPDGRHLASGGNDN 252 (420)
T ss_dssp E----EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC--EEEEEECTTSSEEEEEETTS
T ss_pred E----EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccc--eeeeeecCCCCeeeeeeccc
Confidence 6 67788999999998875 578999999999999998764 445667777766 89999999999999999999
Q ss_pred cEEEEEcCCce----eEEEecCCcceeEEEEEecCCc-EEEEe--C--CeEEEEcCCCCCCCcCC
Q 024185 203 TLHAWNINTRN----EVACWNGNIGVVACLKWAPRRA-MFVAA--S--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 203 ~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~-~l~~~--~--~~v~iw~~~~~~~~~~~ 258 (271)
.+++||..+++ .+.....|...|.+++|+|++. +++++ + +.|++||+.+++.....
T Consensus 253 ~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~ 317 (420)
T 4gga_A 253 LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 317 (420)
T ss_dssp CEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE
T ss_pred cceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee
Confidence 99999998765 3566778999999999999754 55554 2 78999999988765443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-26 Score=187.38 Aligned_cols=223 Identities=16% Similarity=0.134 Sum_probs=170.6
Q ss_pred ceeEEeeecc------eeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCc---eEEEEEecC
Q 024185 11 TQALLFARQN------IILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTAL---EYGIFVLML 81 (271)
Q Consensus 11 ~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg---~i~iwd~~~ 81 (271)
...+++...+ +.+..++...+ ..+.+..|...+.+++|+|+|+. +++++.++ .|++||+++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~-----~~~~l~~~~~~v~~~~~Spdg~~-----la~~s~~~~~~~i~~~d~~t 212 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGY-----NQFVVHRSPQPLMSPAWSPDGSK-----LAYVTFESGRSALVIQTLAN 212 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSC-----SCEEEEEESSCEEEEEECTTSSE-----EEEEECTTSSCEEEEEETTT
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCC-----CCEEEeCCCCcceeeEEcCCCCE-----EEEEEecCCCcEEEEEECCC
Confidence 4566666553 67777776432 12335667889999999999998 67777764 999999999
Q ss_pred cceeEEEecC--CcceEEEcCCCCEEE-EEecCC--eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec
Q 024185 82 ASFQGILRLR--GRPTVAFDQQGLVFA-VAMEAG--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 156 (271)
Q Consensus 82 ~~~~~~~~~~--~~~~~~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 156 (271)
++... +..+ .+.+++|+|||++|+ +++.++ .|++||+.+++ ...+..|...+.+++|+|||++|++++.
T Consensus 213 g~~~~-l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-----~~~l~~~~~~~~~~~~spdg~~l~~~s~ 286 (415)
T 2hqs_A 213 GAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-----IRQVTDGRSNNTEPTWFPDSQNLAFTSD 286 (415)
T ss_dssp CCEEE-EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-----EEECCCCSSCEEEEEECTTSSEEEEEEC
T ss_pred CcEEE-eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-----EEeCcCCCCcccceEECCCCCEEEEEEC
Confidence 88754 4433 356699999999888 555555 59999998876 3456678889999999999999998886
Q ss_pred -CC--eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC---CcEEEEEcCCceeEEEecCCcceeEEEEE
Q 024185 157 -NN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKW 230 (271)
Q Consensus 157 -d~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 230 (271)
++ .|++||+.+++. ..+..+.. .+.+++|+|||++|++++.+ ..|++||+.+++.. .+..+. .+.+++|
T Consensus 287 ~~g~~~i~~~d~~~~~~-~~l~~~~~--~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~ 361 (415)
T 2hqs_A 287 QAGRPQVYKVNINGGAP-QRITWEGS--QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSL 361 (415)
T ss_dssp TTSSCEEEEEETTSSCC-EECCCSSS--EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEE
T ss_pred CCCCcEEEEEECCCCCE-EEEecCCC--cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEE
Confidence 44 788889988764 33433433 48889999999999988764 58999999988774 455554 7899999
Q ss_pred ecCCcEEEEeC--C---eEEEEcCCCCCC
Q 024185 231 APRRAMFVAAS--S---VLSFWIPNPSSN 254 (271)
Q Consensus 231 s~~~~~l~~~~--~---~v~iw~~~~~~~ 254 (271)
+|||++|++++ + .|++||+.++..
T Consensus 362 spdg~~l~~~s~~~~~~~l~~~d~~g~~~ 390 (415)
T 2hqs_A 362 APNGTMVIYSSSQGMGSVLNLVSTDGRFK 390 (415)
T ss_dssp CTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred cCCCCEEEEEEcCCCccEEEEEECCCCcE
Confidence 99999988886 3 699999986543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-26 Score=180.70 Aligned_cols=202 Identities=16% Similarity=0.302 Sum_probs=158.1
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec--CC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL--RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYD 123 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 123 (271)
.++++||+++ . |++ +.|++|++||+++++.++.+.. |. +.+++|+|++++|++|+.||.|++||+++++
T Consensus 28 ~~~l~WS~~~-~-----lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~ 100 (318)
T 4ggc_A 28 LNLVDWSSGN-V-----LAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 100 (318)
T ss_dssp CBCEEECTTS-E-----EEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ceEEEECCCC-E-----EEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence 4678999886 3 334 5699999999999998888764 33 6779999999999999999999999998765
Q ss_pred C-------------------------------------CcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 124 K-------------------------------------GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 124 ~-------------------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
. .......+.+|...+..+.++++++++++++.|+.|++||++
T Consensus 101 ~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 180 (318)
T 4ggc_A 101 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 180 (318)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred eEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence 3 001122344577888999999999999999999999999998
Q ss_pred CCeEE----EEeecCCCCCceeeEEECCCCCEE---EEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEE
Q 024185 167 GGEKR----CGFSLEPSPNTNTEATFTPDGQYV---VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA 239 (271)
Q Consensus 167 ~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 239 (271)
+++.. .....+. ..+.++.++|++..+ ++++.++.|++||.+......... +...+..+.|+|++..+++
T Consensus 181 ~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 181 PGEGGWVPLQTFTQHQ--GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp CBTTBSCCSEEECCCC--SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEE
T ss_pred CCcccccceeeecccC--CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEE
Confidence 76532 2223333 448899999986633 467788999999999888777665 5667999999999988776
Q ss_pred eC----CeEEEEcCCCCCCCcCCC
Q 024185 240 AS----SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 240 ~~----~~v~iw~~~~~~~~~~~~ 259 (271)
++ +.|++||++++++.....
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~ 281 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELK 281 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEc
Confidence 53 779999999988766544
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=184.23 Aligned_cols=200 Identities=16% Similarity=0.145 Sum_probs=153.4
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc----------ee------EEEec-CCcceEEEcCCCCEEE-
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS----------FQ------GILRL-RGRPTVAFDQQGLVFA- 106 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------~~------~~~~~-~~~~~~~~~~~~~~l~- 106 (271)
....+.+++++++.. +++++.++ +++|+..... .. ..+.. ..+.+++|+|++++|+
T Consensus 36 ~~~~n~lavs~~~~~-----l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYGL-----VFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTTE-----EEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCCE-----EEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 446788999999888 67778787 8888764210 11 11111 2367799999999999
Q ss_pred ---EEecCCeEEEEeCCCC-----CC-Ccc-eEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEECCCCeEEEEee
Q 024185 107 ---VAMEAGAIKLFDSRSY-----DK-GPF-DTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFS 175 (271)
Q Consensus 107 ---~~~~d~~i~i~d~~~~-----~~-~~~-~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 175 (271)
+++.|+.|++||+.+. +. .++ ....+.+|...|.+++|+|+ +++|++++.||+|++||+++++......
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~ 189 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL 189 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc
Confidence 6788999999998654 11 112 23445679999999999997 8899999999999999999987766555
Q ss_pred cCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC-------cceeEEEEEecCCcEEEEeC-C-----
Q 024185 176 LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-------IGVVACLKWAPRRAMFVAAS-S----- 242 (271)
Q Consensus 176 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~-~----- 242 (271)
.|... +.+++|+|+|++|++|+.||.|++||++ ++....+..| ...|.+++|++++.++++.+ +
T Consensus 190 ~~~~~--v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~ 266 (434)
T 2oit_A 190 PSTVA--VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE 266 (434)
T ss_dssp CGGGC--EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred CCCCc--eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence 55544 9999999999999999999999999998 5655555433 34899999999998886553 2
Q ss_pred ---eEEEEcCCCCC
Q 024185 243 ---VLSFWIPNPSS 253 (271)
Q Consensus 243 ---~v~iw~~~~~~ 253 (271)
.+++|++...+
T Consensus 267 ~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 267 TSPDVVMALLPKKE 280 (434)
T ss_dssp SCCEEEEEECCCTT
T ss_pred CCCceEEEEeccCC
Confidence 29999998653
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-24 Score=175.82 Aligned_cols=217 Identities=17% Similarity=0.074 Sum_probs=161.2
Q ss_pred eeEEEEe--eccceeeEEEEEcccccceEEeeEEecC--------------CchhhhhhhhhhccC------ceEEEEEe
Q 024185 22 ILILLES--LCGIYQCMIIEFFATSKGIRRGLFLSAC--------------LQLMIALCLVLLTTA------LEYGIFVL 79 (271)
Q Consensus 22 ~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------------~~~~~~~~l~s~~~d------g~i~iwd~ 79 (271)
.+.+++. ..+. ......+.+|...+..+++++. +.. ++.++.+ +.|++||+
T Consensus 94 ~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~-----l~~~s~~~~~~~~~~i~i~d~ 166 (415)
T 2hqs_A 94 AYQLVDTGGAPGT--VLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTR-----IAYVVQTNGGQFPYELRVSDY 166 (415)
T ss_dssp EEEEEECSSSTTC--EEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCE-----EEEEEECSSSSCCEEEEEEET
T ss_pred EEEEEeCCCCCCC--EEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCE-----EEEEEecCCCCccceEEEEcC
Confidence 7788887 6663 2222446677776766666541 333 3333332 79999999
Q ss_pred cCcceeEEEecC--CcceEEEcCCCCEEEEEecCC---eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEE-E
Q 024185 80 MLASFQGILRLR--GRPTVAFDQQGLVFAVAMEAG---AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSML-L 153 (271)
Q Consensus 80 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~ 153 (271)
+.+. .+.+..| .+.+++|+|||++|++++.++ .|++||+.+++. ..+..|...+.+++|+|||++|+ +
T Consensus 167 ~g~~-~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~-----~~l~~~~~~~~~~~~spdg~~la~~ 240 (415)
T 2hqs_A 167 DGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-----RQVASFPRHNGAPAFSPDGSKLAFA 240 (415)
T ss_dssp TSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----EEEECCSSCEEEEEECTTSSEEEEE
T ss_pred CCCC-CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-----EEeecCCCcccCEEEcCCCCEEEEE
Confidence 7544 4555544 456699999999999998775 999999998773 34567788999999999999888 5
Q ss_pred EecCC--eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CC--cEEEEEcCCceeEEEecCCcceeEEE
Q 024185 154 TTTNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGNIGVVACL 228 (271)
Q Consensus 154 ~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~ 228 (271)
++.++ .|++||+++++. ..+..+.. .+.+++|+|||++|++++. ++ .|++||+.+++. ..+..+...+.++
T Consensus 241 ~~~~g~~~i~~~d~~~~~~-~~l~~~~~--~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~ 316 (415)
T 2hqs_A 241 LSKTGSLNLYVMDLASGQI-RQVTDGRS--NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDA 316 (415)
T ss_dssp ECTTSSCEEEEEETTTCCE-EECCCCSS--CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEE
T ss_pred EecCCCceEEEEECCCCCE-EeCcCCCC--cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCe
Confidence 55554 599999998876 44554544 4889999999999988876 44 688889988764 4455577788999
Q ss_pred EEecCCcEEEEeC-----CeEEEEcCCCCCCC
Q 024185 229 KWAPRRAMFVAAS-----SVLSFWIPNPSSNS 255 (271)
Q Consensus 229 ~~s~~~~~l~~~~-----~~v~iw~~~~~~~~ 255 (271)
+|+|||++|++++ ..|++||+.+++..
T Consensus 317 ~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~ 348 (415)
T 2hqs_A 317 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 348 (415)
T ss_dssp EECTTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred EECCCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence 9999999998876 26999999987653
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-23 Score=164.61 Aligned_cols=229 Identities=8% Similarity=0.083 Sum_probs=172.5
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccc--eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKG--IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
.++.+..++.+..++...+ .....+..... ....++++|+++.+ ++++..++.|.+||+.+++.+..+..
T Consensus 3 ~~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~~s~dg~~l----~v~~~~~~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKM----AVDKVITIADAGPTPMVPMVAPGGRIA----YATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEEETTTEEEEEETTTT----EEEEEEECTTCTTCCCCEEECTTSSEE----EEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred EEEEcCCCCeEEEEECCCC----cEEEEEEcCCCCCCccceEEcCCCCEE----EEEeCCCCeEEEEECCCCCeEeeEEc
Confidence 3445566888999987766 22333332221 46779999999764 34667789999999999998877754
Q ss_pred C-------CcceEEEcCCCCEEEEEe------------cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEE
Q 024185 91 R-------GRPTVAFDQQGLVFAVAM------------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM 151 (271)
Q Consensus 91 ~-------~~~~~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 151 (271)
. ....++|+|++++++++. .++.|.+||+.+++. ...+.. ...+.+++|+|+++++
T Consensus 75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----~~~~~~-~~~~~~~~~s~dg~~l 149 (337)
T 1pby_B 75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR----RKAFEA-PRQITMLAWARDGSKL 149 (337)
T ss_dssp CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE----EEEEEC-CSSCCCEEECTTSSCE
T ss_pred CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE----EEEEeC-CCCcceeEECCCCCEE
Confidence 2 455699999999998886 579999999987664 233332 3457889999999988
Q ss_pred EEEecCCeEEEEECCCCeEEEEeecCC--CC-------------------------------------------------
Q 024185 152 LLTTTNNNIYVLDAYGGEKRCGFSLEP--SP------------------------------------------------- 180 (271)
Q Consensus 152 ~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~------------------------------------------------- 180 (271)
+++ ++.|++||+.+++....+.... .+
T Consensus 150 ~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 227 (337)
T 1pby_B 150 YGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE 227 (337)
T ss_dssp EEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred EEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC
Confidence 887 6789999999888766554322 00
Q ss_pred -------------CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEE
Q 024185 181 -------------NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLS 245 (271)
Q Consensus 181 -------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~ 245 (271)
..+.+++|+|||++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++|++++ +.|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~ 304 (337)
T 1pby_B 228 TGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLA 304 (337)
T ss_dssp TCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEE
T ss_pred CCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEE
Confidence 113358999999999888 689999999999988887644 4578999999999888776 8899
Q ss_pred EEcCCCCCCCcCCC
Q 024185 246 FWIPNPSSNSTDES 259 (271)
Q Consensus 246 iw~~~~~~~~~~~~ 259 (271)
+||+++++......
T Consensus 305 v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 305 AYDAETLEKKGQVD 318 (337)
T ss_dssp EEETTTCCEEEEEE
T ss_pred EEECcCCcEEEEEE
Confidence 99999987665443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-23 Score=161.58 Aligned_cols=216 Identities=14% Similarity=0.085 Sum_probs=161.0
Q ss_pred cceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC-cceeEEEecCC---cc
Q 024185 19 QNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML-ASFQGILRLRG---RP 94 (271)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~---~~ 94 (271)
.++.+..++...+. .. .+..|...+.++.|+|++++ +++++ ++.|++||+++ ++.......+. +.
T Consensus 20 ~~~~i~~~d~~~~~----~~-~~~~~~~~v~~~~~spdg~~-----l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (297)
T 2ojh_A 20 MRSSIEIFNIRTRK----MR-VVWQTPELFEAPNWSPDGKY-----LLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNN 88 (297)
T ss_dssp CCEEEEEEETTTTE----EE-EEEEESSCCEEEEECTTSSE-----EEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred cceeEEEEeCCCCc----ee-eeccCCcceEeeEECCCCCE-----EEEEc-CCeEEEEeCCCCCCceEecccccccccc
Confidence 35777888776652 21 24456788999999999998 55544 88999999999 87776665552 45
Q ss_pred eEEEcCCCCEEEEEec--CC--eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEE-EEecCCeEEEEEC--CC
Q 024185 95 TVAFDQQGLVFAVAME--AG--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSML-LTTTNNNIYVLDA--YG 167 (271)
Q Consensus 95 ~~~~~~~~~~l~~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~~~d~--~~ 167 (271)
.++|+|++++|++++. ++ .|..++..+++. ..+..+ ..+..++|+|++++++ +++.++.+++|++ .+
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~ 162 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-----RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS 162 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-----EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-----EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCC
Confidence 6999999999999983 33 455555555442 223333 3588999999999887 6778999999985 33
Q ss_pred CeEEEEeecCCCCCceeeEEECCCCCEEEEec-CCCcEEEEEcC-CceeEEEecCCcceeEEEEEecCCcEEEEeC----
Q 024185 168 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNIN-TRNEVACWNGNIGVVACLKWAPRRAMFVAAS---- 241 (271)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---- 241 (271)
++ ...+..+.. .+.+++|+|++++++.++ .++.+.+|++. .+.....+..|...+..++|+|+|++|++++
T Consensus 163 ~~-~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 239 (297)
T 2ojh_A 163 GV-ETRLTHGEG--RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDAD 239 (297)
T ss_dssp CC-EEECCCSSS--CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETT
T ss_pred Cc-ceEcccCCC--ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCC
Confidence 44 344444443 488999999999888766 58899999986 5667778888888899999999999988776
Q ss_pred ---------CeEEEEcCCCCCC
Q 024185 242 ---------SVLSFWIPNPSSN 254 (271)
Q Consensus 242 ---------~~v~iw~~~~~~~ 254 (271)
+.|.+||+++++.
T Consensus 240 ~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 240 VFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CCSCCSSEEEEEEEEETTSCSC
T ss_pred CCcccccCceEEEEEecCCCCc
Confidence 2399999988765
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.1e-23 Score=163.98 Aligned_cols=224 Identities=9% Similarity=0.025 Sum_probs=170.6
Q ss_pred ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-------
Q 024185 20 NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG------- 92 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------- 92 (271)
++.+..++...+. ....+.. ......+.++|+++.+ +++...++.|.+||.++++.+..+..+.
T Consensus 68 ~~~v~~~d~~~~~----~~~~~~~-~~~~~~~~~s~dg~~l----~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 138 (353)
T 3vgz_A 68 GGVVYRLDPVTLE----VTQAIHN-DLKPFGATINNTTQTL----WFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEV 138 (353)
T ss_dssp SEEEEEECTTTCC----EEEEEEE-SSCCCSEEEETTTTEE----EEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSC
T ss_pred CccEEEEcCCCCe----EEEEEec-CCCcceEEECCCCCEE----EEEecCCCEEEEEeCCCCeeEEEEecCCCcccccc
Confidence 4567777765552 2222332 2346678999999863 4466778999999999999888886643
Q ss_pred ----cceEEEcCCCCEEEEEe--cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 93 ----RPTVAFDQQGLVFAVAM--EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 93 ----~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
...++|+|+++++++++ .++.|.+||..+++. ...+..+...+.+++|+|+++++++++.++.+.+||+.
T Consensus 139 ~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~ 214 (353)
T 3vgz_A 139 RPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL----KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTA 214 (353)
T ss_dssp CCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE----EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT
T ss_pred CCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce----EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECC
Confidence 34599999999888776 478999999988774 44444455568899999999999999999999999999
Q ss_pred CCeEEEEeecCCC--CCceeeEEECCCCCEEEEecC-CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--
Q 024185 167 GGEKRCGFSLEPS--PNTNTEATFTPDGQYVVSGSG-DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-- 241 (271)
Q Consensus 167 ~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 241 (271)
+++....+..... ...+..++|+|++++++.++. ++.|.+||+.+++.+..+..... ..++|+|+|++++.++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~ 292 (353)
T 3vgz_A 215 DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQ 292 (353)
T ss_dssp TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETT
T ss_pred CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECC
Confidence 9998887765221 234778999999998776665 58999999999998888765432 5799999999655443
Q ss_pred -CeEEEEcCCCCCCCcCC
Q 024185 242 -SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 242 -~~v~iw~~~~~~~~~~~ 258 (271)
+.|.+||..+++.....
T Consensus 293 ~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 293 AGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp TTEEEEEETTTTEEEEEE
T ss_pred CCeEEEEECCCCeEEEEE
Confidence 78999999888765433
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-22 Score=160.76 Aligned_cols=223 Identities=7% Similarity=-0.000 Sum_probs=160.7
Q ss_pred eecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce-eEEEecCC-cc
Q 024185 17 ARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF-QGILRLRG-RP 94 (271)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~-~~ 94 (271)
...++.+..++...+.. ...+..+.... .++++|+++.+ ++++..++.|.+||.++++. ...+..+. ..
T Consensus 16 ~~~~~~v~~~d~~~~~~----~~~~~~~~~~~-~~~~s~dg~~l----~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (331)
T 3u4y_A 16 EQHLRRISFFSTDTLEI----LNQITLGYDFV-DTAITSDCSNV----VVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM 86 (331)
T ss_dssp EGGGTEEEEEETTTCCE----EEEEECCCCEE-EEEECSSSCEE----EEEESTTCEEEEEECSSSSCEEEEEEECSSCC
T ss_pred ecCCCeEEEEeCcccce----eeeEEccCCcc-eEEEcCCCCEE----EEEeCCCCeEEEEECCCCceeEEecccCCCCc
Confidence 34578888998776632 22233445555 89999999963 33555689999999999887 66665543 44
Q ss_pred e-EEEcCCCCEEEEEecCC---eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe-cCCe-EEEEECCCC
Q 024185 95 T-VAFDQQGLVFAVAMEAG---AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNN-IYVLDAYGG 168 (271)
Q Consensus 95 ~-~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~-i~~~d~~~~ 168 (271)
. ++|+|++++++++..++ .|.+||+.+++. ...+.. .....+++|+|+|+++++++ .++. +.+|++...
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~----~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 87 ADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF----ISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp CCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE----EEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred cceEECCCCCEEEEecCCCCcccEEEEECCCCCe----EEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 4 89999999999555443 899999988764 333332 34568999999998766654 4577 999998754
Q ss_pred eEEEEe--ecCCCCCceeeEEECCCCCEEEEe-cCCCcEEEEEcCCcee---EEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 169 EKRCGF--SLEPSPNTNTEATFTPDGQYVVSG-SGDGTLHAWNINTRNE---VACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 169 ~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
..+... ..-........++|+|+|++++.+ ..++.|.+||+.+++. +..+..+ ..+..++|+|||++++.++
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS
T ss_pred CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc
Confidence 332111 100111337889999999966554 4688999999999888 7777644 5578999999999776664
Q ss_pred --CeEEEEcCCCCCC
Q 024185 242 --SVLSFWIPNPSSN 254 (271)
Q Consensus 242 --~~v~iw~~~~~~~ 254 (271)
+.|.+||+.+++.
T Consensus 241 ~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 241 STVDVFNFNQLSGTL 255 (331)
T ss_dssp SEEEEEEEETTTTEE
T ss_pred CCCEEEEEECCCCce
Confidence 6699999998776
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-22 Score=161.40 Aligned_cols=232 Identities=10% Similarity=0.059 Sum_probs=162.8
Q ss_pred eeEEeeec-ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccC-c--eEEEEEecCcceeEE
Q 024185 12 QALLFARQ-NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTA-L--EYGIFVLMLASFQGI 87 (271)
Q Consensus 12 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~ 87 (271)
+.++++.. ++.+..++...+.. ....+..+.....+++++|++++ ++++..+ + .|.+||+++++.+..
T Consensus 52 ~~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~-----l~~~~~~~~~~~i~v~d~~~~~~~~~ 123 (331)
T 3u4y_A 52 SNVVVTSDFCQTLVQIETQLEPP---KVVAIQEGQSSMADVDITPDDQF-----AVTVTGLNHPFNMQSYSFLKNKFIST 123 (331)
T ss_dssp CEEEEEESTTCEEEEEECSSSSC---EEEEEEECSSCCCCEEECTTSSE-----EEECCCSSSSCEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCce---eEEecccCCCCccceEECCCCCE-----EEEecCCCCcccEEEEECCCCCeEEE
Confidence 33554443 66888888766633 13334555555555999999998 4444444 3 999999999998888
Q ss_pred EecCC-cceEEEcCCCCEEEEE-ecCCe-EEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe-cCCeEEEE
Q 024185 88 LRLRG-RPTVAFDQQGLVFAVA-MEAGA-IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVL 163 (271)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~l~~~-~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~ 163 (271)
+..+. ...++|+|+|++++++ ..++. +.+|++......................++|+|+|+++++++ .++.|++|
T Consensus 124 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 203 (331)
T 3u4y_A 124 IPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGIL 203 (331)
T ss_dssp EECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEE
Confidence 77654 4569999999866655 55577 999999865430000011113345689999999999776655 58999999
Q ss_pred ECCCCeE---EEEeecCCCCCceeeEEECCCCCEEEEec-CCCcEEEEEcCCcee--EEEecCC----cce---eEEEEE
Q 024185 164 DAYGGEK---RCGFSLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRNE--VACWNGN----IGV---VACLKW 230 (271)
Q Consensus 164 d~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~----~~~---v~~~~~ 230 (271)
|+.+++. +..+.... .+..++|+|||++++.++ .++.|.+||+.+++. +..+..+ ... ...++|
T Consensus 204 d~~~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (331)
T 3u4y_A 204 ETQNPENITLLNAVGTNN---LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMAL 280 (331)
T ss_dssp ECSSTTSCEEEEEEECSS---CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEE
T ss_pred ECCCCcccceeeeccCCC---CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEE
Confidence 9998887 66666443 367799999999776655 478899999998887 4444322 222 255899
Q ss_pred ecCCcEEEEeC---CeEEEEcCCCCCC
Q 024185 231 APRRAMFVAAS---SVLSFWIPNPSSN 254 (271)
Q Consensus 231 s~~~~~l~~~~---~~v~iw~~~~~~~ 254 (271)
+|||++|++++ +.|.+||+.....
T Consensus 281 spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 281 NKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred CCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 99999876554 6899999987543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-23 Score=164.50 Aligned_cols=234 Identities=10% Similarity=0.077 Sum_probs=169.9
Q ss_pred cceeEEee-ecceeeEEEEeeccceeeEEEEEccccc-ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 10 ITQALLFA-RQNIILILLESLCGIYQCMIIEFFATSK-GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 10 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
....+++. ..++.+..++...+ ...+.+..+. .....++++|+++.+ ++++..++.|.+||+++++.+..
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~s~dg~~~----~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASD----TVYKSCVMPDKFGPGTAMMAPDNRTA----YVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTT----EEEEEEECSSCCSSCEEEECTTSSEE----EEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCCeEEEEECCCC----cEEEEEecCCCCCCceeEECCCCCEE----EEEeCCCCcEEEEeCCCCcEEEE
Confidence 34444444 56889999987766 3233343332 246678999999863 34667889999999999988877
Q ss_pred EecCC--------cceEEEcCCCCEEEEEecC------------CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC
Q 024185 88 LRLRG--------RPTVAFDQQGLVFAVAMEA------------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 147 (271)
Q Consensus 88 ~~~~~--------~~~~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 147 (271)
+.... +..++|+|+|+++++++.+ +.|.+||+.+++.... ..... +...+.+++|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~-~~~~~~~~~~s~d 158 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP-VRTFP-MPRQVYLMRAADD 158 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC-SEEEE-CCSSCCCEEECTT
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce-eeecc-CCCcccceeECCC
Confidence 76432 4669999999999998865 8999999987442000 11222 3346889999999
Q ss_pred CcEEEEEecCCeEEEEECCCCeEEEEeecCCC------------------------------------------------
Q 024185 148 GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS------------------------------------------------ 179 (271)
Q Consensus 148 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~------------------------------------------------ 179 (271)
|+ +++++. .|++||+.+++....+.....
T Consensus 159 g~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 235 (349)
T 1jmx_B 159 GS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 235 (349)
T ss_dssp SC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred Cc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence 99 666543 499999999887766543320
Q ss_pred ------------------CCceeeEEECC-CCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEe
Q 024185 180 ------------------PNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA 240 (271)
Q Consensus 180 ------------------~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 240 (271)
...+..++|+| ++++++++ ++.|.+||+.+++.+..+... ..+.+++|+|+|++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~ 312 (349)
T 1jmx_B 236 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLG 312 (349)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEE
T ss_pred EEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEe
Confidence 00244677889 99999888 889999999999988887643 347899999999887776
Q ss_pred C--CeEEEEcCCCCCCCcCCC
Q 024185 241 S--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 241 ~--~~v~iw~~~~~~~~~~~~ 259 (271)
+ +.|++||+++++......
T Consensus 313 ~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 313 GTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp SBSSEEEEEETTTTEEEEEEE
T ss_pred cCCCeEEEEeccccceeeeee
Confidence 6 889999999887665543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=9.6e-22 Score=156.93 Aligned_cols=232 Identities=11% Similarity=0.049 Sum_probs=157.7
Q ss_pred eeEEeeecc-eeeEEEEee--ccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec---Cccee
Q 024185 12 QALLFARQN-IILILLESL--CGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM---LASFQ 85 (271)
Q Consensus 12 ~~l~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~ 85 (271)
+.++++..+ +.+..++.. .+.. ..+..+..+. .+..++|+|+++.+ ++++..++.|.+||++ +.+..
T Consensus 50 ~~l~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~s~dg~~l----~~~~~~~~~i~~~d~~~~~~~~~~ 122 (343)
T 1ri6_A 50 RYLYVGVRPEFRVLAYRIAPDDGAL--TFAAESALPG-SLTHISTDHQGQFV----FVGSYNAGNVSVTRLEDGLPVGVV 122 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTTCCE--EEEEEEECSS-CCSEEEECTTSSEE----EEEETTTTEEEEEEEETTEEEEEE
T ss_pred CEEEEeecCCCeEEEEEecCCCCce--eeccccccCC-CCcEEEEcCCCCEE----EEEecCCCeEEEEECCCCcccccc
Confidence 445555544 777777665 3322 2223343333 67789999999973 2355568999999994 44455
Q ss_pred EEEecC-CcceEEEcCCCCEEEEEe-cCCeEEEEeCCC-CCCCcceEE--EecC-CccceEEEEEcCCCcEEEEEe-cCC
Q 024185 86 GILRLR-GRPTVAFDQQGLVFAVAM-EAGAIKLFDSRS-YDKGPFDTF--LVGG-DTAEVCDIKFSNDGKSMLLTT-TNN 158 (271)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~-~~~~~~~~~--~~~~-~~~~v~~~~~s~~~~~l~~~~-~d~ 158 (271)
..+..+ .+..++|+|+++++++++ .++.|.+||+.+ ++. .... .... ....+.+++|+|+++++++++ .++
T Consensus 123 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~ 200 (343)
T 1ri6_A 123 DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL--VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS 200 (343)
T ss_dssp EEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE--EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred ccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce--eeecccccccCCCCCcceEEECCCCCEEEEEeCCCC
Confidence 555544 356699999999888887 889999999987 442 1111 2222 234788999999999876665 789
Q ss_pred eEEEEECCC--CeE--EEEeecC----CCCCceeeEEECCCCCEEEE-ecCCCcEEEEEcC----CceeEEEecCCccee
Q 024185 159 NIYVLDAYG--GEK--RCGFSLE----PSPNTNTEATFTPDGQYVVS-GSGDGTLHAWNIN----TRNEVACWNGNIGVV 225 (271)
Q Consensus 159 ~i~~~d~~~--~~~--~~~~~~~----~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~----~~~~~~~~~~~~~~v 225 (271)
.+.+||+.. ++. ...+... .....+..++|+|+|+++++ +..++.|.+||+. +.+.+..+..+.. +
T Consensus 201 ~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~ 279 (343)
T 1ri6_A 201 SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-P 279 (343)
T ss_dssp EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-C
T ss_pred EEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-c
Confidence 999999953 432 2222211 11234667999999998874 4578999999998 3445555655544 8
Q ss_pred EEEEEecCCcEEEEeC---CeEEEEcC--CCCC
Q 024185 226 ACLKWAPRRAMFVAAS---SVLSFWIP--NPSS 253 (271)
Q Consensus 226 ~~~~~s~~~~~l~~~~---~~v~iw~~--~~~~ 253 (271)
.+++|+|+|++|++++ +.+.+|++ ++++
T Consensus 280 ~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 280 RGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp CCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred ceEEECCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence 8999999999887775 78999954 4543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-21 Score=155.98 Aligned_cols=227 Identities=10% Similarity=0.059 Sum_probs=153.7
Q ss_pred ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhc-cCceEEEEEecC-cc--eeEEEecC----
Q 024185 20 NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLT-TALEYGIFVLML-AS--FQGILRLR---- 91 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~--~~~~~~~~---- 91 (271)
++.+..++...+.. ..+..+..+......++++|+++. +++++ .++.+.+|++.. +. .+..+...
T Consensus 62 ~~~v~~~~~~~g~~--~~~~~~~~~~~~p~~~a~spdg~~-----l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p 134 (347)
T 3hfq_A 62 EGGIAAWQIDGQTA--HKLNTVVAPGTPPAYVAVDEARQL-----VYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGP 134 (347)
T ss_dssp EEEEEEEEEETTEE--EEEEEEEEESCCCSEEEEETTTTE-----EEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCS
T ss_pred CceEEEEEecCCcE--EEeeeeecCCCCCEEEEECCCCCE-----EEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCC
Confidence 46777777754422 223333445667778999999997 44444 789999999963 32 23333221
Q ss_pred -------CcceEEEcCCCCEEEEEecCCeEEEEeCC-CCCCCcceEEEecC-CccceEEEEEcCCCcEEEEE-ecCCeEE
Q 024185 92 -------GRPTVAFDQQGLVFAVAMEAGAIKLFDSR-SYDKGPFDTFLVGG-DTAEVCDIKFSNDGKSMLLT-TTNNNIY 161 (271)
Q Consensus 92 -------~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-~~d~~i~ 161 (271)
.+..++|+|+|+.+++...++.|.+|++. +++. ........ .......++|+|||++++++ ..++.+.
T Consensus 135 ~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~--~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~ 212 (347)
T 3hfq_A 135 RPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL--SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIA 212 (347)
T ss_dssp STTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE--EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE--EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEE
Confidence 13459999999955556668899999998 4432 11111122 22367889999999977665 5688999
Q ss_pred EEECCC--CeEE--EEeecCCCC----CceeeEEECCCCCEEE-EecCCCcEEEEEcC---CceeEEEecCCcceeEEEE
Q 024185 162 VLDAYG--GEKR--CGFSLEPSP----NTNTEATFTPDGQYVV-SGSGDGTLHAWNIN---TRNEVACWNGNIGVVACLK 229 (271)
Q Consensus 162 ~~d~~~--~~~~--~~~~~~~~~----~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~ 229 (271)
+|++.. ++.. ..+...... ..+..++|+|||++|+ +...++.|.+|++. +.+.+..+..+...+..++
T Consensus 213 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~ 292 (347)
T 3hfq_A 213 SLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFD 292 (347)
T ss_dssp EEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEE
T ss_pred EEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEE
Confidence 999874 5532 222222211 3477899999999885 45568999999997 3355666666666789999
Q ss_pred EecCCcEEEEeC---CeEEEE--cCCCCCCC
Q 024185 230 WAPRRAMFVAAS---SVLSFW--IPNPSSNS 255 (271)
Q Consensus 230 ~s~~~~~l~~~~---~~v~iw--~~~~~~~~ 255 (271)
|+|||++|++++ +.+.+| |.+++++.
T Consensus 293 ~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 293 LDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred ECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 999999887775 779999 55666654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=8e-24 Score=185.43 Aligned_cols=200 Identities=12% Similarity=0.050 Sum_probs=155.8
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-----cceEEEcCCCCEEEEEecC---------C
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-----RPTVAFDQQGLVFAVAMEA---------G 112 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~d---------~ 112 (271)
....+.|+|+|++ +++ +.||+|++||..+++....+..+. +..++|||||++|++++.+ +
T Consensus 18 ~~~~~~~spdg~~-----~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 18 HDPEAKWISDTEF-----IYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCCCCBSSSSCB-----CCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred cccccEEcCCCcE-----EEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeeccee
Confidence 3566899999996 444 789999999999999888887664 5679999999999999764 7
Q ss_pred eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCC-----------
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN----------- 181 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~----------- 181 (271)
.+++||+.+++. .......+|...+..++|||||+.|++++. +.|++||+.+++..+....+....
T Consensus 92 ~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ 168 (723)
T 1xfd_A 92 YYVLSKIPHGDP--QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE 168 (723)
T ss_dssp EEEEEESSSCCC--EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred eEEEEECCCCce--EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEE
Confidence 889999998774 111122344455889999999999999886 799999999887766544332211
Q ss_pred -----ceeeEEECCCCCEEEEecCCC----------------------------------cEEEEEcCCceeEEEecCC-
Q 024185 182 -----TNTEATFTPDGQYVVSGSGDG----------------------------------TLHAWNINTRNEVACWNGN- 221 (271)
Q Consensus 182 -----~v~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~- 221 (271)
.+.+++|+|||++|++++.++ .|++||+.+++....+..+
T Consensus 169 ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~ 248 (723)
T 1xfd_A 169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD 248 (723)
T ss_dssp HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC
T ss_pred EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc
Confidence 136799999999999887543 7999999988876666554
Q ss_pred -----cceeEEEEEecCCcEEEEeC------CeEEEEcCCCCCCC
Q 024185 222 -----IGVVACLKWAPRRAMFVAAS------SVLSFWIPNPSSNS 255 (271)
Q Consensus 222 -----~~~v~~~~~s~~~~~l~~~~------~~v~iw~~~~~~~~ 255 (271)
...+..++|||||+++++.+ ..|++||+.+++..
T Consensus 249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~ 293 (723)
T 1xfd_A 249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT 293 (723)
T ss_dssp CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce
Confidence 56789999999999887663 35999999887753
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-22 Score=168.04 Aligned_cols=223 Identities=10% Similarity=0.110 Sum_probs=164.6
Q ss_pred eEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEe--cCcceeEEEe
Q 024185 13 ALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVL--MLASFQGILR 89 (271)
Q Consensus 13 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~ 89 (271)
.++++ ..++.+..++...+ ..+..+..+.. +..++++|++++ +++++.|++|++||+ .+++.+..+.
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~----~~~~~i~~g~~-~~~v~~spdg~~-----l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSK----KIVKVIDTGYA-VHISRMSASGRY-----LLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTC----CEEEEEECSTT-EEEEEECTTSCE-----EEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred EEEEEEcCCCeEEEEECCCc----eEEEEEecCcc-cceEEECCCCCE-----EEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 34443 45678888887666 33344553333 778999999999 778888999999999 8888888887
Q ss_pred cCC-cceEEEcC----CCCEEEEEec-CCeEEEEeCCCCCCCcceEEEecC--------Cc-cceEEEEEcCCCcEE-EE
Q 024185 90 LRG-RPTVAFDQ----QGLVFAVAME-AGAIKLFDSRSYDKGPFDTFLVGG--------DT-AEVCDIKFSNDGKSM-LL 153 (271)
Q Consensus 90 ~~~-~~~~~~~~----~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~--------~~-~~v~~~~~s~~~~~l-~~ 153 (271)
.+. ...++|+| ||+++++++. +++|.+||..+.+. .......+ |. ..+..+.++|++..+ ++
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~--~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs 297 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP--KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 297 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE--EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc--ceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence 554 45599999 9999999874 89999999988765 33333211 22 368999999977655 45
Q ss_pred EecCCeEEEEECCCCeEEE--EeecCCCCCceeeEEECCCCCEEEEec-CCCcEEEEEcCCceeEEEecC----CcceeE
Q 024185 154 TTTNNNIYVLDAYGGEKRC--GFSLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRNEVACWNG----NIGVVA 226 (271)
Q Consensus 154 ~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~----~~~~v~ 226 (271)
...++.|.+||..+.+.+. .+. +. ..+..+.|+|+|+++++++ .+++|.+||..+++++..+.. |.+...
T Consensus 298 ~~~~g~i~vvd~~~~~~l~~~~i~-~~--~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~ 374 (543)
T 1nir_A 298 VKETGKVLLVNYKDIDNLTVTSIG-AA--PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 374 (543)
T ss_dssp ETTTTEEEEEECTTSSSCEEEEEE-CC--SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred ECCCCeEEEEEecCCCcceeEEec-cC--cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc
Confidence 5668999999998866544 333 22 2377799999999876554 588999999999999888864 544333
Q ss_pred EEEEecC-CcEEEEeC---CeEEEEcCCC
Q 024185 227 CLKWAPR-RAMFVAAS---SVLSFWIPNP 251 (271)
Q Consensus 227 ~~~~s~~-~~~l~~~~---~~v~iw~~~~ 251 (271)
.+ ++|+ +.++++++ ++|.+||+.+
T Consensus 375 ~~-~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 375 NF-VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp EE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred cc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence 33 4777 66777763 7899999988
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-21 Score=155.56 Aligned_cols=231 Identities=13% Similarity=0.163 Sum_probs=156.7
Q ss_pred ecceeEEee-ecceeeEEEEeec-cceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccC-ceEEEEEec--Ccc
Q 024185 9 PITQALLFA-RQNIILILLESLC-GIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTA-LEYGIFVLM--LAS 83 (271)
Q Consensus 9 ~~~~~l~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~d-g~i~iwd~~--~~~ 83 (271)
|..+.++++ ..++.+..++... +.. .....+ .+...+..++|+|+++. +++++.+ +.|.+|+++ +++
T Consensus 2 ~~~~~l~~~~~~~~~v~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~spdg~~-----l~~~~~~~~~v~~~~~~~~~~~ 73 (343)
T 1ri6_A 2 SLKQTVYIASPESQQIHVWNLNHEGAL--TLTQVV-DVPGQVQPMVVSPDKRY-----LYVGVRPEFRVLAYRIAPDDGA 73 (343)
T ss_dssp CCEEEEEEEEGGGTEEEEEEECTTSCE--EEEEEE-ECSSCCCCEEECTTSSE-----EEEEETTTTEEEEEEECTTTCC
T ss_pred CceEEEEEeCCCCCeEEEEEECCCCcE--EEeeeE-ecCCCCceEEECCCCCE-----EEEeecCCCeEEEEEecCCCCc
Confidence 455566666 4578888887642 211 222222 35567788999999997 4455554 999999997 554
Q ss_pred --eeEEEecC-CcceEEEcCCCCEEEEEec-CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe-cCC
Q 024185 84 --FQGILRLR-GRPTVAFDQQGLVFAVAME-AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNN 158 (271)
Q Consensus 84 --~~~~~~~~-~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~ 158 (271)
.+..+..+ .+..++|+|+++++++++. ++.|.+||+..+.. ......+. ....+.+++|+|+++++++++ .++
T Consensus 74 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~ 151 (343)
T 1ri6_A 74 LTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP-VGVVDVVE-GLDGCHSANISPDNRTLWVPALKQD 151 (343)
T ss_dssp EEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE-EEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGT
T ss_pred eeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc-cccccccc-CCCCceEEEECCCCCEEEEecCCCC
Confidence 33444433 4566999999998877765 78999999952221 01122233 334688999999999888887 799
Q ss_pred eEEEEECCC-CeEEE----EeecCCCCCceeeEEECCCCCEEEEec-CCCcEEEEEcCC--cee--EEEec---CC---c
Q 024185 159 NIYVLDAYG-GEKRC----GFSLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINT--RNE--VACWN---GN---I 222 (271)
Q Consensus 159 ~i~~~d~~~-~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~--~~~--~~~~~---~~---~ 222 (271)
.|++||+.+ ++... .+..+.. ..+..++|+|+++++++++ .++.+.+||+.. ++. ..... .. .
T Consensus 152 ~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 230 (343)
T 1ri6_A 152 RICLFTVSDDGHLVAQDPAEVTTVEG-AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT 230 (343)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECSTT-CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred EEEEEEecCCCceeeecccccccCCC-CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc
Confidence 999999987 65432 2222222 3477899999999776554 789999999953 433 22222 11 2
Q ss_pred ceeEEEEEecCCcEEEE-eC--CeEEEEcCC
Q 024185 223 GVVACLKWAPRRAMFVA-AS--SVLSFWIPN 250 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~-~~--~~v~iw~~~ 250 (271)
..+..++|+|+|++|+. +. +.+.+||+.
T Consensus 231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 231 RWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 35668999999987764 43 789999998
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-21 Score=164.06 Aligned_cols=233 Identities=12% Similarity=0.124 Sum_probs=174.5
Q ss_pred ecceeEEeeecceeeEEEEe--eccceeeEEEEEcccccceEEeeEEec----CCchhhhhhhhhhc-cCceEEEEEecC
Q 024185 9 PITQALLFARQNIILILLES--LCGIYQCMIIEFFATSKGIRRGLFLSA----CLQLMIALCLVLLT-TALEYGIFVLML 81 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~~~~~~l~s~~-~dg~i~iwd~~~ 81 (271)
|....++.+..++.+..++. ..+ ..+..+.. ......++|+| +|++ +++++ .+++|.+||..+
T Consensus 188 pdg~~l~v~~~d~~V~v~D~~~~t~----~~~~~i~~-g~~p~~va~sp~~~~dg~~-----l~v~~~~~~~v~v~D~~t 257 (543)
T 1nir_A 188 ASGRYLLVIGRDARIDMIDLWAKEP----TKVAEIKI-GIEARSVESSKFKGYEDRY-----TIAGAYWPPQFAIMDGET 257 (543)
T ss_dssp TTSCEEEEEETTSEEEEEETTSSSC----EEEEEEEC-CSEEEEEEECCSTTCTTTE-----EEEEEEESSEEEEEETTT
T ss_pred CCCCEEEEECCCCeEEEEECcCCCC----cEEEEEec-CCCcceEEeCCCcCCCCCE-----EEEEEccCCeEEEEeccc
Confidence 34455566666788888888 444 23334443 34567899999 9998 55555 589999999999
Q ss_pred cceeEEEecC-------------CcceEEEcCCCCE-EEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC
Q 024185 82 ASFQGILRLR-------------GRPTVAFDQQGLV-FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 147 (271)
Q Consensus 82 ~~~~~~~~~~-------------~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 147 (271)
+++++.+..+ .+..+.++|++.. +++...++.|.+||..+.+. .....+. +...+.++.|+|+
T Consensus 258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~--l~~~~i~-~~~~~~~~~~spd 334 (543)
T 1nir_A 258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN--LTVTSIG-AAPFLHDGGWDSS 334 (543)
T ss_dssp CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS--CEEEEEE-CCSSCCCEEECTT
T ss_pred cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc--ceeEEec-cCcCccCceECCC
Confidence 9998888652 2345899998765 45557789999999987664 2222332 4566888999999
Q ss_pred CcEEEEEe-cCCeEEEEECCCCeEEEEeecCCCC--CceeeEEECCC-CCEEEEec-CCCcEEEEEcCC-------ceeE
Q 024185 148 GKSMLLTT-TNNNIYVLDAYGGEKRCGFSLEPSP--NTNTEATFTPD-GQYVVSGS-GDGTLHAWNINT-------RNEV 215 (271)
Q Consensus 148 ~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~--~~v~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~ 215 (271)
|+++++++ .+++|.+||+.+++++..+.....+ .....+ ++|+ +..++++. .|++|.+||+.+ ++.+
T Consensus 335 g~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v 413 (543)
T 1nir_A 335 HRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV 413 (543)
T ss_dssp SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred CCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEE
Confidence 99887665 5889999999999998887753221 112222 4677 66666665 579999999998 8999
Q ss_pred EEecCCcceeEEEEEecCCcEEEEeC---------CeEEEEcCCCCCCC
Q 024185 216 ACWNGNIGVVACLKWAPRRAMFVAAS---------SVLSFWIPNPSSNS 255 (271)
Q Consensus 216 ~~~~~~~~~v~~~~~s~~~~~l~~~~---------~~v~iw~~~~~~~~ 255 (271)
+++.+|...+..++++|++++|++++ ++|.+||+++++..
T Consensus 414 ~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 414 AELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp EEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred EEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 99999988889999999999999974 47999999998765
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=177.95 Aligned_cols=198 Identities=10% Similarity=0.019 Sum_probs=156.7
Q ss_pred cceEEeeEEecCCchhhhhhhhhhcc-Cc-----eEEEEEecCcceeEEEecCC--------------------------
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTT-AL-----EYGIFVLMLASFQGILRLRG-------------------------- 92 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~-dg-----~i~iwd~~~~~~~~~~~~~~-------------------------- 92 (271)
...+..++|||+|+. +++++. |+ .|++||+.+++....+..+.
T Consensus 36 ~~~~~~~~~SpdG~~-----la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-----VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTG 110 (741)
T ss_dssp CCCCEEEEECTTSSE-----EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEE
T ss_pred CCCCCCceEecCCCE-----EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccC
Confidence 446888999999998 677776 87 99999999998777665431
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCC---CCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSY---DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE 169 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 169 (271)
+..++|+|||++|++++. +.|++||+.++ + ...+..|...+.+++|||||++|++++ ++.|++||+.+++
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~-----~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAA-----VRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTS-----CCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcce-----EEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC
Confidence 456999999999999986 99999999887 4 234556778899999999999999887 4699999999887
Q ss_pred EEEEeecCCCC--------------CceeeEEECCCCCEEEEecCCC---------------------------------
Q 024185 170 KRCGFSLEPSP--------------NTNTEATFTPDGQYVVSGSGDG--------------------------------- 202 (271)
Q Consensus 170 ~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~~dg--------------------------------- 202 (271)
.......+... ..+..+.|+|||++|++++.|+
T Consensus 184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 66544332221 0136799999999999987665
Q ss_pred cEEEEEcCC-ceeEEEec--CCcceeEEEEEecCCcEEEEeC-------CeEEEEcCCCCCCC
Q 024185 203 TLHAWNINT-RNEVACWN--GNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSSNS 255 (271)
Q Consensus 203 ~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~~~ 255 (271)
.|++||+.+ ++...... .|...+..++| |||++|++++ ..|++||+.+++..
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~ 325 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR 325 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE
Confidence 789999988 87655443 47788999999 9999888653 45999999887653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-21 Score=155.82 Aligned_cols=203 Identities=6% Similarity=-0.032 Sum_probs=158.7
Q ss_pred ceEEeeEEecCCchhhhhhhhhhc------cCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEE-ecCCeEEEE
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLT------TALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVA-MEAGAIKLF 117 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~d~~i~i~ 117 (271)
.....++++|+++.+++ +.. .++.|.+||.++++.+..+.... ...++|+|++++++++ ..++.|.+|
T Consensus 41 ~~~~~~~~s~dg~~l~~----~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWL----ATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp SSEEEEEEETTTTEEEE----EECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCccceEECCCCCEEEE----EcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 45667999999987422 222 27899999999999888887543 4569999999966655 457899999
Q ss_pred eCCCCCCCcceEEEecCCcc---------ceEEEEEcCCCcEEEEEe--cCCeEEEEECCCCeEEEEeecCCCCCceeeE
Q 024185 118 DSRSYDKGPFDTFLVGGDTA---------EVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA 186 (271)
Q Consensus 118 d~~~~~~~~~~~~~~~~~~~---------~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~ 186 (271)
|..+++. ...+..+.. .+.+++|+|+++++++++ .++.|.+||..+++....+...... +..+
T Consensus 117 d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~ 190 (353)
T 3vgz_A 117 DAKTGEV----KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKM--STGL 190 (353)
T ss_dssp ETTTCCE----EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTT--CCCC
T ss_pred eCCCCee----EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCc--cceE
Confidence 9998875 333332221 278899999999888776 4789999999999988887644332 6779
Q ss_pred EECCCCCEEEEecCCCcEEEEEcCCceeEEEecC----CcceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCCCcCC
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG----NIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~~~~~ 258 (271)
+|+|+|+++++++.++.|.+||+.+++....+.. +...+.+++|+|++++++.++ +.|.+||+.+++.....
T Consensus 191 ~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 191 ALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp EEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 9999999999999999999999999998887754 455678899999999776664 78999999888765443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=157.71 Aligned_cols=214 Identities=12% Similarity=0.073 Sum_probs=153.9
Q ss_pred eeEEeeecceeeEEEEeec-cceeeEEEEEcccc-cceEEeeEEecCCchhhhhhhhhhc--cCceEEEEEe--cCccee
Q 024185 12 QALLFARQNIILILLESLC-GIYQCMIIEFFATS-KGIRRGLFLSACLQLMIALCLVLLT--TALEYGIFVL--MLASFQ 85 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~~~~l~s~~--~dg~i~iwd~--~~~~~~ 85 (271)
..+++ ..++.+..++... +.. ......+ ...+.++.|+|+++. +++++ .++...+|.+ .+++.
T Consensus 54 ~~l~~-~~~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~spdg~~-----l~~~~~~~~~~~~l~~~~~~~~~~- 122 (297)
T 2ojh_A 54 KYLLL-NSEGLLYRLSLAGDPSP----EKVDTGFATICNNDHGISPDGAL-----YAISDKVEFGKSAIYLLPSTGGTP- 122 (297)
T ss_dssp SEEEE-EETTEEEEEESSSCCSC----EECCCTTCCCBCSCCEECTTSSE-----EEEEECTTTSSCEEEEEETTCCCC-
T ss_pred CEEEE-EcCCeEEEEeCCCCCCc----eEeccccccccccceEECCCCCE-----EEEEEeCCCCcceEEEEECCCCce-
Confidence 33444 4477888888766 522 2234444 467888999999998 55555 3355666655 44443
Q ss_pred EEEe-cCCcceEEEcCCCCEEE-EEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe-cCCeEEE
Q 024185 86 GILR-LRGRPTVAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYV 162 (271)
Q Consensus 86 ~~~~-~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~ 162 (271)
..+. ......++|+|++++|+ ++..++.+++|++..... ....+..+...+.+++|+|+++++++++ .++.+++
T Consensus 123 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i 199 (297)
T 2ojh_A 123 RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG---VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQI 199 (297)
T ss_dssp EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC---CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC---cceEcccCCCccccceECCCCCEEEEEecCCCCccE
Confidence 3333 33456689999999887 677889999998643221 1445667778899999999999888776 4888999
Q ss_pred EECC-CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC-----------CcEEEEEcCCcee--EEEecCCcceeEEE
Q 024185 163 LDAY-GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-----------GTLHAWNINTRNE--VACWNGNIGVVACL 228 (271)
Q Consensus 163 ~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~--~~~~~~~~~~v~~~ 228 (271)
|++. .+.....+..+.. .+..++|+|+|++|++++.+ +.|++||+.+++. +..+.+|...+.++
T Consensus 200 ~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 277 (297)
T 2ojh_A 200 WRVRVDGSSVERITDSAY--GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSP 277 (297)
T ss_dssp EEEETTSSCEEECCCCSE--EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSC
T ss_pred EEECCCCCCcEEEecCCc--ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccc
Confidence 9876 4555555655443 48889999999999988765 5699999988766 34445778889999
Q ss_pred EEecCCcEEEEeC
Q 024185 229 KWAPRRAMFVAAS 241 (271)
Q Consensus 229 ~~s~~~~~l~~~~ 241 (271)
+|+|++++|++++
T Consensus 278 ~~spdg~~l~~~~ 290 (297)
T 2ojh_A 278 NWSPDGDEFAYVR 290 (297)
T ss_dssp CBCTTSSEEEEEE
T ss_pred eECCCCCEEEEEE
Confidence 9999999998876
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-22 Score=174.34 Aligned_cols=229 Identities=11% Similarity=0.037 Sum_probs=167.0
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC-----cceeE
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML-----ASFQG 86 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~ 86 (271)
..++++ .++.+..++...+ .... +..+...+..+.|||+|+. +++ ..++.|++||+.+ ++..+
T Consensus 93 ~~~~~~-~~~~i~~~d~~~~----~~~~-l~~~~~~~~~~~~SpdG~~-----la~-~~~~~i~v~~~~~~~~~~g~~~~ 160 (706)
T 2z3z_A 93 GLVVLF-TQGGLVGFDMLAR----KVTY-LFDTNEETASLDFSPVGDR-----VAY-VRNHNLYIARGGKLGEGMSRAIA 160 (706)
T ss_dssp TEEEEE-ETTEEEEEETTTT----EEEE-EECCTTCCTTCEECTTSSE-----EEE-EETTEEEEEECBCTTSCCCCCEE
T ss_pred CeEEEE-ECCEEEEEECCCC----ceEE-ccCCcccccCCcCCCCCCE-----EEE-EECCeEEEEecCcccccCCCcEE
Confidence 555555 4688888887665 2222 3345567888999999998 445 4789999999998 77665
Q ss_pred EEecCC----------------cceEEEcCCCCEEEEEe---------------------------------cCCeEEEE
Q 024185 87 ILRLRG----------------RPTVAFDQQGLVFAVAM---------------------------------EAGAIKLF 117 (271)
Q Consensus 87 ~~~~~~----------------~~~~~~~~~~~~l~~~~---------------------------------~d~~i~i~ 117 (271)
....+. +..++|+|||++|++++ .+..|++|
T Consensus 161 ~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~ 240 (706)
T 2z3z_A 161 VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIY 240 (706)
T ss_dssp SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEE
T ss_pred eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEE
Confidence 444332 25699999999999987 34689999
Q ss_pred eCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC-----eEEEEECCCCeEEEEeecCCCC---CceeeEEEC
Q 024185 118 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-----NIYVLDAYGGEKRCGFSLEPSP---NTNTEATFT 189 (271)
Q Consensus 118 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~~ 189 (271)
|+.+++. ........|...+.+++|+|||++|++++.++ .|++||+.+++....+...... ..+.++.|+
T Consensus 241 d~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s 318 (706)
T 2z3z_A 241 HLATGKT--VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFL 318 (706)
T ss_dssp ETTTTEE--EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEEC
T ss_pred ECCCCce--EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceee
Confidence 9988763 11111124667899999999999999988775 8999999998433333211111 124568999
Q ss_pred C--CCCEEEEecCCCcEEEEEcC-CceeEEEecCCcceeEE-EEEecCCcEEEEeC---C----eEEEEcCCCCCC
Q 024185 190 P--DGQYVVSGSGDGTLHAWNIN-TRNEVACWNGNIGVVAC-LKWAPRRAMFVAAS---S----VLSFWIPNPSSN 254 (271)
Q Consensus 190 ~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~---~----~v~iw~~~~~~~ 254 (271)
| ||+++++++.++.+++|++. +++.+..+..+...+.. ++|+|+|+.|+.++ + .|..||+.+++.
T Consensus 319 p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 394 (706)
T 2z3z_A 319 PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT 394 (706)
T ss_dssp TTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC
T ss_pred cCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc
Confidence 9 99999999999999999886 67777888878777876 79999998776554 3 566777776653
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-22 Score=176.42 Aligned_cols=226 Identities=10% Similarity=-0.001 Sum_probs=160.9
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccc---eEEeeEEecCCchhhhhhhhhhccC---------ceEEEEEec
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKG---IRRGLFLSACLQLMIALCLVLLTTA---------LEYGIFVLM 80 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~~~~~~l~s~~~d---------g~i~iwd~~ 80 (271)
.+++...++.+..++...+.. ...+.++.. .+..++|||||+. +++++.+ +.+++||++
T Consensus 29 ~~~~~~~dg~i~~~d~~~g~~----~~~~~~~~~~~~~v~~~~~SpDg~~-----l~~~~~~~~~~~~~~~~~i~~~d~~ 99 (723)
T 1xfd_A 29 EFIYREQKGTVRLWNVETNTS----TVLIEGKKIESLRAIRYEISPDREY-----ALFSYNVEPIYQHSYTGYYVLSKIP 99 (723)
T ss_dssp CBCCCCSSSCEEEBCGGGCCC----EEEECTTTTTTTTCSEEEECTTSSE-----EEEEESCCCCSSSCCCSEEEEEESS
T ss_pred cEEEEeCCCCEEEEECCCCcE----EEEeccccccccccceEEECCCCCE-----EEEEecCccceeecceeeEEEEECC
Confidence 355555678888888877732 233555554 3888999999998 5555543 788899999
Q ss_pred CcceeEEEec---C--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccc-----------------
Q 024185 81 LASFQGILRL---R--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE----------------- 138 (271)
Q Consensus 81 ~~~~~~~~~~---~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~----------------- 138 (271)
+++. ..+.. + .+..++|||||++|++++. +.|++||+.+++. ......+...
T Consensus 100 ~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~----~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 100 HGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA----IRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp SCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC----EEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred CCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce----EEEecCCCCCceECcccceeEEEEecc
Confidence 8876 33332 2 1556999999999999885 7999999998775 2222333332
Q ss_pred -eEEEEEcCCCcEEEEEecCC----------------------------------eEEEEECCCCeEEEEeecCC----C
Q 024185 139 -VCDIKFSNDGKSMLLTTTNN----------------------------------NIYVLDAYGGEKRCGFSLEP----S 179 (271)
Q Consensus 139 -v~~~~~s~~~~~l~~~~~d~----------------------------------~i~~~d~~~~~~~~~~~~~~----~ 179 (271)
+.+++|||||++|++++.++ .|++||+.+++....+..+. .
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~ 253 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR 253 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence 37899999999999987543 79999999887655555431 1
Q ss_pred CCceeeEEECCCCCEEEEecC----CCcEEEEEcCCceeEEEecC-CcceeE----EEEEecCCcEEEEe-C---C----
Q 024185 180 PNTNTEATFTPDGQYVVSGSG----DGTLHAWNINTRNEVACWNG-NIGVVA----CLKWAPRRAMFVAA-S---S---- 242 (271)
Q Consensus 180 ~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~-~~~~v~----~~~~s~~~~~l~~~-~---~---- 242 (271)
...+..++|+|||+++++... +..|++||+.+++....+.. +...+. .++|+|||+.|+.. + +
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 333 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK 333 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcc
Confidence 234788999999998876643 35799999999887766543 334333 78999999977754 2 5
Q ss_pred --eEEEEc-CCCCC
Q 024185 243 --VLSFWI-PNPSS 253 (271)
Q Consensus 243 --~v~iw~-~~~~~ 253 (271)
.|.+|| ..+++
T Consensus 334 ~~~l~~~d~~~~~~ 347 (723)
T 1xfd_A 334 FYHITVSSSQPNSS 347 (723)
T ss_dssp EEEEEEECSSCCSS
T ss_pred eeEEEEEeccCCCC
Confidence 477777 34444
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=177.03 Aligned_cols=226 Identities=9% Similarity=-0.003 Sum_probs=159.8
Q ss_pred ecceeEEeeec-ce-----eeEEEEeeccceeeEEEEEccccc------------------------ceEEeeEEecCCc
Q 024185 9 PITQALLFARQ-NI-----ILILLESLCGIYQCMIIEFFATSK------------------------GIRRGLFLSACLQ 58 (271)
Q Consensus 9 ~~~~~l~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~v~~~~~s~~~~ 58 (271)
|..+.++++.. ++ .+..++...+.. .+.+..+. ..+..++|||+|+
T Consensus 46 pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~ 121 (741)
T 2ecf_A 46 PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQT----RLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ 121 (741)
T ss_dssp TTSSEEEEEECCSSCTTEEEEEEEETTTCCE----EEEECGGGTC--------------------CCEESCCCEECTTSS
T ss_pred cCCCEEEEEeccCCCCcccEEEEEECCCCce----eEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC
Confidence 44456777665 55 788888766622 22233322 2377899999999
Q ss_pred hhhhhhhhhhccCceEEEEEecCcc--eeEEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecC
Q 024185 59 LMIALCLVLLTTALEYGIFVLMLAS--FQGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG 134 (271)
Q Consensus 59 ~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 134 (271)
. +++++. +.|++||+.++. ....+..+ .+..++|+|||++|++++ ++.|++||+.+++. ......
T Consensus 122 ~-----l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~----~~~~~~ 190 (741)
T 2ecf_A 122 R-----LLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ----MQLTAD 190 (741)
T ss_dssp E-----EEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE----EECCCC
T ss_pred E-----EEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE----EEeccC
Confidence 8 555554 999999998882 23334433 356699999999999988 56999999987653 222222
Q ss_pred Cccc----------------eEEEEEcCCCcEEEEEecCC---------------------------------eEEEEEC
Q 024185 135 DTAE----------------VCDIKFSNDGKSMLLTTTNN---------------------------------NIYVLDA 165 (271)
Q Consensus 135 ~~~~----------------v~~~~~s~~~~~l~~~~~d~---------------------------------~i~~~d~ 165 (271)
+... +..++|||||++|++++.|+ .|++||+
T Consensus 191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~ 270 (741)
T 2ecf_A 191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP 270 (741)
T ss_dssp CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence 2221 47899999999999988765 8999999
Q ss_pred CC-CeEEEEeecCCCCCceeeEEECCCCCEEEEecC-----CCcEEEEEcCCceeEEEecCCcc----eeEEEEEecCCc
Q 024185 166 YG-GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-----DGTLHAWNINTRNEVACWNGNIG----VVACLKWAPRRA 235 (271)
Q Consensus 166 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~s~~~~ 235 (271)
.+ ++.............+..++| |||++|++++. +..|++||+.+++....+..+.. .+..++|+|||+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~ 349 (741)
T 2ecf_A 271 AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS 349 (741)
T ss_dssp STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC
T ss_pred CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe
Confidence 88 776544332122345889999 99999987653 56799999999988777655443 356899999999
Q ss_pred EEEEeC--CeEEEEcCC
Q 024185 236 MFVAAS--SVLSFWIPN 250 (271)
Q Consensus 236 ~l~~~~--~~v~iw~~~ 250 (271)
++++++ +.+++|.++
T Consensus 350 ~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 350 ILWSSERTGFQHLYRID 366 (741)
T ss_dssp EEEEECTTSSCEEEEEC
T ss_pred EEEEecCCCccEEEEEc
Confidence 888876 656666554
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=161.98 Aligned_cols=197 Identities=14% Similarity=0.069 Sum_probs=144.3
Q ss_pred ccceEEeeEEecCCchhhhhhhh----hhccCceEEEEEecCc--------ce---eEEEecC--CcceEEEcCC-CCEE
Q 024185 44 SKGIRRGLFLSACLQLMIALCLV----LLTTALEYGIFVLMLA--------SF---QGILRLR--GRPTVAFDQQ-GLVF 105 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~----s~~~dg~i~iwd~~~~--------~~---~~~~~~~--~~~~~~~~~~-~~~l 105 (271)
+.+.+.+++|+|++++ |+ +++.|+.|++||++++ +. ...+.+| .+.+++|+|+ +++|
T Consensus 91 ~~~~v~~l~~spdg~~-----lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l 165 (434)
T 2oit_A 91 MKFPIHHLALSCDNLT-----LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMV 165 (434)
T ss_dssp CSSCEEEEEECTTSCE-----EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEE
T ss_pred CCCcccEEEEcCCCCE-----EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEE
Confidence 4567999999999998 66 7899999999999765 22 2334444 4677999998 7899
Q ss_pred EEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCC-----C
Q 024185 106 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS-----P 180 (271)
Q Consensus 106 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-----~ 180 (271)
++++.||+|++||++++.. .....+|...|.+++|+|+|++|++|+.||.|++||.+ ++....+..+.. .
T Consensus 166 as~s~Dg~v~iwD~~~~~~----~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~ 240 (434)
T 2oit_A 166 AVCLADGSIAVLQVTETVK----VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHP 240 (434)
T ss_dssp EEEETTSCEEEEEESSSEE----EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSC
T ss_pred EEEECCCeEEEEEcCCCcc----eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCc
Confidence 9999999999999988753 44456788999999999999999999999999999998 555555544432 1
Q ss_pred CceeeEEECCCCCEEEEe-cCCC------cEEEEEcCCce-----eEEEec-------CCcceeEEEEEecCCcEEEEeC
Q 024185 181 NTNTEATFTPDGQYVVSG-SGDG------TLHAWNINTRN-----EVACWN-------GNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 181 ~~v~~~~~~~~~~~l~~~-~~dg------~i~iwd~~~~~-----~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
..+.+++|++++.++++. +.+| .+++|++++.+ ....+. +...+-..+.+.++.+++++++
T Consensus 241 ~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s 320 (434)
T 2oit_A 241 VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAAS 320 (434)
T ss_dssp EEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEE
T ss_pred eeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEec
Confidence 258999999998887543 2333 38999998642 112221 1122223344457878777765
Q ss_pred ---CeEEEEcCC
Q 024185 242 ---SVLSFWIPN 250 (271)
Q Consensus 242 ---~~v~iw~~~ 250 (271)
++|.+....
T Consensus 321 ~~s~dv~vl~~~ 332 (434)
T 2oit_A 321 AASTEVSILARQ 332 (434)
T ss_dssp TTCSBCEEEEEC
T ss_pred CCCCceeEEEec
Confidence 557777643
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.1e-21 Score=173.44 Aligned_cols=191 Identities=11% Similarity=0.015 Sum_probs=154.9
Q ss_pred cceEEeeEEe-cCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC---CcceEEEcCCCCEEEEEecCCeEE-EEeC
Q 024185 45 KGIRRGLFLS-ACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR---GRPTVAFDQQGLVFAVAMEAGAIK-LFDS 119 (271)
Q Consensus 45 ~~~v~~~~~s-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~-i~d~ 119 (271)
...+..+.|+ |+|+. +++++ ++.+.+|+..+++... +..+ .+..++|+ ||+.|++++.++.+. +||.
T Consensus 295 ~~~v~~~~~S~pdG~~-----la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~ 366 (1045)
T 1k32_A 295 IPSKFAEDFSPLDGDL-----IAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDY 366 (1045)
T ss_dssp CGGGGEEEEEECGGGC-----EEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEET
T ss_pred ccccceeeecCCCCCE-----EEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEEC
Confidence 3467889999 99998 44444 8899999998777543 3333 24458999 999999998888888 9999
Q ss_pred CCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec
Q 024185 120 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 199 (271)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 199 (271)
.+++ ...+.+|...+..++|+|||++|++++.++.|++||+.+++.......+... +.+++|+|||++|++++
T Consensus 367 ~~~~-----~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~--v~~~~~SpDG~~la~~~ 439 (1045)
T 1k32_A 367 RTGK-----AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM--ITDFTISDNSRFIAYGF 439 (1045)
T ss_dssp TTCC-----EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC--CCCEEECTTSCEEEEEE
T ss_pred CCCC-----ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCC--ccceEECCCCCeEEEEe
Confidence 8765 3334477788999999999999999999999999999999887776566554 78899999999999887
Q ss_pred CCC----------cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 200 GDG----------TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 200 ~dg----------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
.++ .|++||+.+++ +..+..|...+..++|+|||++|++++ +...+|+...
T Consensus 440 ~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 440 PLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp EECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred cCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 643 89999999887 677777888889999999999888876 5567777543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-19 Score=142.29 Aligned_cols=228 Identities=10% Similarity=0.048 Sum_probs=145.7
Q ss_pred eeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE------ecCC--
Q 024185 21 IILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL------RLRG-- 92 (271)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~-- 92 (271)
+.+..+......-....+.....+......+++ +++.+ +++...++.+.+|++.....+..+ .+..
T Consensus 75 ~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l----~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~ 148 (361)
T 3scy_A 75 AAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNI----VTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPD 148 (361)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEE----EEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSC
T ss_pred CcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEE----EEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCC
Confidence 566555543311111222333333444555666 77763 335557899999999754322211 1111
Q ss_pred --------cceEEEcCCCCEEEEEe-cCCeEEEEeCCCCCC----C-cc-----eEEEecCCccceEEEEEcCCCcEEEE
Q 024185 93 --------RPTVAFDQQGLVFAVAM-EAGAIKLFDSRSYDK----G-PF-----DTFLVGGDTAEVCDIKFSNDGKSMLL 153 (271)
Q Consensus 93 --------~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~----~-~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~ 153 (271)
...++|+|+|+++++++ .++.|.+|++..... . .. .... ..+......++|+|||+++++
T Consensus 149 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~v 227 (361)
T 3scy_A 149 KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK-VAPGSGPRHLIFNSDGKFAYL 227 (361)
T ss_dssp TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE-CCTTCCEEEEEECTTSSEEEE
T ss_pred ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee-cCCCCCCeEEEEcCCCCEEEE
Confidence 24599999999777665 478999998875431 1 11 1222 233456789999999998888
Q ss_pred Ee-cCCeEEEEECCCCeEE--EEeecCC-CCCceeeEEECCCCCEEEEecCC--CcEEEEEcC--Cce--eEEEecCCcc
Q 024185 154 TT-TNNNIYVLDAYGGEKR--CGFSLEP-SPNTNTEATFTPDGQYVVSGSGD--GTLHAWNIN--TRN--EVACWNGNIG 223 (271)
Q Consensus 154 ~~-~d~~i~~~d~~~~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~--~~~--~~~~~~~~~~ 223 (271)
++ .++.|.+||+.+++.. ..+.... .......++|+|||++|+++..+ +.|.+|++. +++ .+..+.. ..
T Consensus 228 ~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~ 306 (361)
T 3scy_A 228 INEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GI 306 (361)
T ss_dssp EETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SS
T ss_pred EcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CC
Confidence 77 5899999999877642 2222211 11336789999999998776654 899999995 444 4445554 45
Q ss_pred eeEEEEEecCCcEEEEeC---CeEEEE--cCCCCCCCc
Q 024185 224 VVACLKWAPRRAMFVAAS---SVLSFW--IPNPSSNST 256 (271)
Q Consensus 224 ~v~~~~~s~~~~~l~~~~---~~v~iw--~~~~~~~~~ 256 (271)
.+.+++|+|||++|++++ +.+.+| |.+++++..
T Consensus 307 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 307 HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 678999999999888775 779995 555666543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-21 Score=167.72 Aligned_cols=193 Identities=11% Similarity=0.066 Sum_probs=141.9
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCC---
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRS--- 121 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--- 121 (271)
..+..++|||+ +.+ +. +.++.+++||+.+++........ .+..++|+|||++|+++ .++.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~-----~~-~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLV-----VL-FTQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGE 153 (706)
T ss_dssp CCCEEEEETTT-TEE-----EE-EETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTS
T ss_pred cCceeEEECCC-CeE-----EE-EECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccc
Confidence 45888999999 542 22 25699999999988765554432 35669999999999986 589999999988
Q ss_pred --CCCCcceEEEecCCccc--------------eEEEEEcCCCcEEEEEe------------------------------
Q 024185 122 --YDKGPFDTFLVGGDTAE--------------VCDIKFSNDGKSMLLTT------------------------------ 155 (271)
Q Consensus 122 --~~~~~~~~~~~~~~~~~--------------v~~~~~s~~~~~l~~~~------------------------------ 155 (271)
++. ......+... +.++.|||||++|++++
T Consensus 154 ~~g~~----~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g 229 (706)
T 2z3z_A 154 GMSRA----IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG 229 (706)
T ss_dssp CCCCC----EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred cCCCc----EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence 664 2222222222 48899999999999987
Q ss_pred ---cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC-----cEEEEEcCCceeEEEec--CCcc--
Q 024185 156 ---TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG-----TLHAWNINTRNEVACWN--GNIG-- 223 (271)
Q Consensus 156 ---~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~--~~~~-- 223 (271)
.+..|++||+.+++.............+.+++|+|||+++++++.++ .|++||+.+++....+. .+..
T Consensus 230 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 230 TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV 309 (706)
T ss_dssp SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence 34689999999988655443322334588999999999999887665 89999999984433332 1222
Q ss_pred -eeEEEEEec--CCcEEEEeC--CeEEEEcCC
Q 024185 224 -VVACLKWAP--RRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 224 -~v~~~~~s~--~~~~l~~~~--~~v~iw~~~ 250 (271)
.+.+++|+| ||+++++++ +.+++|+++
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred CccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 246789999 999988886 668888765
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-21 Score=164.85 Aligned_cols=221 Identities=9% Similarity=-0.006 Sum_probs=155.3
Q ss_pred eecceeEEeeec-ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhcc---CceEEEEEecC--
Q 024185 8 LPITQALLFARQ-NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTT---ALEYGIFVLML-- 81 (271)
Q Consensus 8 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~---dg~i~iwd~~~-- 81 (271)
.|..+.++++.. ++.+.++....+ ...+...++...+..++|+|+ +. +++++. +...++|.++.
T Consensus 30 ~~DG~~la~~s~~~g~~~lw~~~~g----~~~~lt~~~~~~~~~~~~spd-~~-----l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 30 VVDGDKLLVVGFSEGSVNAYLYDGG----ETVKLNREPINSVLDPHYGVG-RV-----ILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp EETTTEEEEEEEETTEEEEEEEETT----EEEECCSSCCSEECEECTTCS-EE-----EEEEECSTTSCCEEEEEEETTS
T ss_pred CCCCCeEEEEEccCCceeEEEEcCC----CcEeeecccccccccccCCCC-eE-----EEEeccCCCCcceEEEEEeccC
Confidence 355677777765 777777775333 222333334468889999999 55 344443 55566766543
Q ss_pred -cceeEEEecCCcceEEEcCCCCE-EEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC--
Q 024185 82 -ASFQGILRLRGRPTVAFDQQGLV-FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-- 157 (271)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-- 157 (271)
+........+.....+|+|+++. +++.+.++.+.+||+.+++. . .+..+.. .+++|||||+++++++.+
T Consensus 100 ~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~----~-~l~~~~~--~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 100 PGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL----R-ELARLPG--FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp TTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE----E-EEEEESS--CEEEEEEETTEEEEEEEEET
T ss_pred CCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE----E-EeecCCC--ceEEECCCCCEEEEEEEcCC
Confidence 33332223334556789998863 33344455566999988763 2 2222223 889999999999988876
Q ss_pred --CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC--cEEEEEcCCceeEEEecCCcceeEEEE----
Q 024185 158 --NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG--TLHAWNINTRNEVACWNGNIGVVACLK---- 229 (271)
Q Consensus 158 --~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~---- 229 (271)
+.|++||+.+++.. .+..+.. .+..++|+|||++|+++..++ .|++||+.+++.. .+.+|...+..++
T Consensus 173 ~~~~i~~~d~~~g~~~-~l~~~~~--~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGLR-VFDSGEG--SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI 248 (582)
T ss_dssp TEEEEEEEETTTCCCE-EECCSSC--EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred CCeEEEEEcCCCCCce-EeecCCC--ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence 78999999888754 4544443 488999999999999888888 8999999998887 7777777777777
Q ss_pred ----EecCCcEEEEeC--CeEEEEcC
Q 024185 230 ----WAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 230 ----~s~~~~~l~~~~--~~v~iw~~ 249 (271)
|+|||.++++++ +.+++|++
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEET
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 999998777776 88999999
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-20 Score=148.05 Aligned_cols=185 Identities=11% Similarity=0.063 Sum_probs=143.1
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCC----cceEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecC---Cc
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRG----RPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGG---DT 136 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~---~~ 136 (271)
+++++.++.|++||..+++.+..+.... ...++|+|++++++++ ..++.|.+||+.+++. ........ +.
T Consensus 4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~ 81 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET--LGRIDLSTPEERV 81 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--EEEEECCBTTEEE
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe--EeeEEcCCccccc
Confidence 6688899999999999999888886443 5669999999876554 5578999999988774 22222221 12
Q ss_pred cceEEEEEcCCCcEEEEEe------------cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcE
Q 024185 137 AEVCDIKFSNDGKSMLLTT------------TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL 204 (271)
Q Consensus 137 ~~v~~~~~s~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 204 (271)
..+.+++|+|+|+++++++ .++.|.+||+.+++.+..+.... .+.+++|+|+|++++++ ++.|
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~--~~~i 156 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGL--GRDL 156 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEE--SSSE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC---CcceeEECCCCCEEEEe--CCeE
Confidence 2677899999999998886 57999999999998887776533 26778999999988887 5789
Q ss_pred EEEEcCCceeEEEecCCc--------------------------------------------------------------
Q 024185 205 HAWNINTRNEVACWNGNI-------------------------------------------------------------- 222 (271)
Q Consensus 205 ~iwd~~~~~~~~~~~~~~-------------------------------------------------------------- 222 (271)
.+||+.+++....+..+.
T Consensus 157 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 236 (337)
T 1pby_B 157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeec
Confidence 999998887765543221
Q ss_pred ----ceeEEEEEecCCcEEEEeCCeEEEEcCCCCCCCc
Q 024185 223 ----GVVACLKWAPRRAMFVAASSVLSFWIPNPSSNST 256 (271)
Q Consensus 223 ----~~v~~~~~s~~~~~l~~~~~~v~iw~~~~~~~~~ 256 (271)
..+.+++|+|||++++++++.|.+||+.+++...
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~~~~v~~~d~~~~~~~~ 274 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIK 274 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEE
T ss_pred CCCCCceeeEEECCCCCEEEEeCCeEEEEECCCCcCcc
Confidence 1234689999999998888999999998876543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=9e-20 Score=147.33 Aligned_cols=202 Identities=11% Similarity=0.030 Sum_probs=139.3
Q ss_pred EEeeEEecCCchhhhhhhhhhc-------------cCceEEEEEec-CcceeEEEe------cCCcceEEEcCCCCEEEE
Q 024185 48 RRGLFLSACLQLMIALCLVLLT-------------TALEYGIFVLM-LASFQGILR------LRGRPTVAFDQQGLVFAV 107 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~-------------~dg~i~iwd~~-~~~~~~~~~------~~~~~~~~~~~~~~~l~~ 107 (271)
...++++|+|+.++ ++++. .+|.+.+|+++ +++....+. ......++|+|||+++++
T Consensus 85 ~~~~~~spdg~~l~---~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 85 PRANDADTNTRAIF---LLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp GGGGCTTSCCEEEE---EEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CccEEECCCCCEEE---EEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 45588999998411 22332 68999999997 465544443 123556999999998887
Q ss_pred Eec-CCeEEEEeCC-CCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CCeEEEEECC--CCeEEE---EeecCC-
Q 024185 108 AME-AGAIKLFDSR-SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAY--GGEKRC---GFSLEP- 178 (271)
Q Consensus 108 ~~~-d~~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~--~~~~~~---~~~~~~- 178 (271)
+.. ++.|++||+. +++...........|...+..++|+|||+++++++. ++.+.+|++. +++... .+....
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 754 6799999998 565311111122223567899999999999988775 7899999765 565421 222111
Q ss_pred ---CCC-------ceeeEE-ECCCCCEEEEecCC-C-----cEEEEEcC-CceeEE---EecCCcceeEEEEEec---CC
Q 024185 179 ---SPN-------TNTEAT-FTPDGQYVVSGSGD-G-----TLHAWNIN-TRNEVA---CWNGNIGVVACLKWAP---RR 234 (271)
Q Consensus 179 ---~~~-------~v~~~~-~~~~~~~l~~~~~d-g-----~i~iwd~~-~~~~~~---~~~~~~~~v~~~~~s~---~~ 234 (271)
... .+..++ |+|||++|++++.+ + .|.+|++. +++... ....+...+..++|+| ||
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 101 377899 99999998877643 2 89999996 566543 2333445567899999 89
Q ss_pred cEEEEeC---CeEEEEcCCCC
Q 024185 235 AMFVAAS---SVLSFWIPNPS 252 (271)
Q Consensus 235 ~~l~~~~---~~v~iw~~~~~ 252 (271)
++|++++ +.|.+|+++..
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 9998886 67999998765
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-21 Score=151.66 Aligned_cols=192 Identities=12% Similarity=0.063 Sum_probs=144.7
Q ss_pred eeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC---cceEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCC
Q 024185 50 GLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG---RPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKG 125 (271)
Q Consensus 50 ~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~ 125 (271)
.+++++++.. +++++.++.|++||..+++.+..+..+. ...++|+|++++++++ ..++.|.+||+.+++.
T Consensus 4 g~~~~~~~~~-----~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~- 77 (349)
T 1jmx_B 4 GPALKAGHEY-----MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN- 77 (349)
T ss_dssp CCCCCTTCEE-----EEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-
T ss_pred cccccCCCEE-----EEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-
Confidence 3567777777 7788999999999999999888887554 5569999999876554 5688999999988764
Q ss_pred cceEEEec-CC-----ccceEEEEEcCCCcEEEEEecC------------CeEEEEECCCCeEE---EEeecCCCCCcee
Q 024185 126 PFDTFLVG-GD-----TAEVCDIKFSNDGKSMLLTTTN------------NNIYVLDAYGGEKR---CGFSLEPSPNTNT 184 (271)
Q Consensus 126 ~~~~~~~~-~~-----~~~v~~~~~s~~~~~l~~~~~d------------~~i~~~d~~~~~~~---~~~~~~~~~~~v~ 184 (271)
...+. .+ ...+..++|+|||+++++++.+ +.|.+||+.+++.. ..+..+ ..+.
T Consensus 78 ---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~ 151 (349)
T 1jmx_B 78 ---TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP---RQVY 151 (349)
T ss_dssp ---EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC---SSCC
T ss_pred ---EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC---Cccc
Confidence 22222 22 2337889999999999998865 89999999885433 333322 2377
Q ss_pred eEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc------------------------------------------
Q 024185 185 EATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI------------------------------------------ 222 (271)
Q Consensus 185 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------------------ 222 (271)
+++|+|||+ +++++. .|.+||+.+++.+..+..+.
T Consensus 152 ~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 228 (349)
T 1jmx_B 152 LMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 228 (349)
T ss_dssp CEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred ceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence 899999999 555543 49999999988877664331
Q ss_pred --------------------------ceeEEEEEec-CCcEEEEeCCeEEEEcCCCCCCCc
Q 024185 223 --------------------------GVVACLKWAP-RRAMFVAASSVLSFWIPNPSSNST 256 (271)
Q Consensus 223 --------------------------~~v~~~~~s~-~~~~l~~~~~~v~iw~~~~~~~~~ 256 (271)
..+.+++|+| ++++++++.+.|.+||+.+++...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~v~~~d~~~~~~~~ 289 (349)
T 1jmx_B 229 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIK 289 (349)
T ss_dssp CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEE
T ss_pred cccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEEcCeEEEEECccCeEEE
Confidence 1245677889 999888888889999999877543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-20 Score=159.35 Aligned_cols=183 Identities=13% Similarity=0.056 Sum_probs=143.6
Q ss_pred eeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecC----CeEEEEeCCCCCCC
Q 024185 50 GLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEA----GAIKLFDSRSYDKG 125 (271)
Q Consensus 50 ~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~ 125 (271)
..+++|+++.++ +++++. +.+.+||+++++.......+. ..++|+|||++|++++.+ +.|++||+.+++.
T Consensus 114 ~~~~s~dg~~~~---~~s~~~-~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~- 187 (582)
T 3o4h_A 114 ILSGVDTGEAVV---FTGATE-DRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL- 187 (582)
T ss_dssp EEEEEECSSCEE---EEEECS-SCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-
T ss_pred eeeeCCCCCeEE---EEecCC-CCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-
Confidence 568899987532 234444 445599999988766665555 779999999999988766 7899999988874
Q ss_pred cceEEEecCCccceEEEEEcCCCcEEEEEecCC--eEEEEECCCCeEEEEeecCCCCCceeeEE--------ECCCCCEE
Q 024185 126 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEAT--------FTPDGQYV 195 (271)
Q Consensus 126 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l 195 (271)
..+..|.+.+..++|||||+.|+++..++ .|++||+.+++.. .+..+... +..+. |+|||.++
T Consensus 188 ----~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~spdg~~~ 260 (582)
T 3o4h_A 188 ----RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKD--FSSYRPTAITWLGYLPDGRLA 260 (582)
T ss_dssp ----EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSH--HHHHCCSEEEEEEECTTSCEE
T ss_pred ----eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcC--hhhhhhccccceeEcCCCcEE
Confidence 35667888899999999999999888888 8999999988876 55544432 55566 99999988
Q ss_pred EEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-----CeEEEEcCCC
Q 024185 196 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNP 251 (271)
Q Consensus 196 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~v~iw~~~~ 251 (271)
++++.++.+++|++ ++... .+.+.+.+++|+ +++++++++ ..+.+||..+
T Consensus 261 ~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 261 VVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 99999999999999 66554 234678999999 999888775 3477887654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-19 Score=141.52 Aligned_cols=201 Identities=14% Similarity=0.131 Sum_probs=136.6
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhc--cCceEEEEEecCcce--eEEEe--cCCcceEEEcCCCCEEEEEe-cCCeEEE
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLT--TALEYGIFVLMLASF--QGILR--LRGRPTVAFDQQGLVFAVAM-EAGAIKL 116 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~--~~~~~--~~~~~~~~~~~~~~~l~~~~-~d~~i~i 116 (271)
+......++++|+|+. ++++. .++.|++||+++++. +..+. ......++|+|+|++|++++ .++.+.+
T Consensus 38 ~~~~p~~~a~spdg~l-----~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v 112 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCL-----YSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEV 112 (347)
T ss_dssp ECSCCCCEEECTTCEE-----EEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEE
T ss_pred ccCCcceEEEccCCeE-----EEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEE
Confidence 3455667999999993 33443 379999999987663 33322 23456699999999988887 6789999
Q ss_pred EeCCC-CCCCcceEEEecC-------CccceEEEEEcCCCcEEEEEecCCeEEEEECC-CCeEEE--EeecCCCCCceee
Q 024185 117 FDSRS-YDKGPFDTFLVGG-------DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY-GGEKRC--GFSLEPSPNTNTE 185 (271)
Q Consensus 117 ~d~~~-~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~-~~~~~~--~~~~~~~~~~v~~ 185 (271)
|++.. +...........+ +...+.+++|+|+|+.+++...++.|++||+. +++... .+..... .....
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-~~p~~ 191 (347)
T 3hfq_A 113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-FGPRH 191 (347)
T ss_dssp EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-CCEEE
T ss_pred EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-CCCce
Confidence 99963 3321111111111 12348899999999955555668899999998 554332 2222222 24678
Q ss_pred EEECCCCCEEEE-ecCCCcEEEEEcCC--cee--EEEecCCc------ceeEEEEEecCCcEEEEeC---CeEEEEcCC
Q 024185 186 ATFTPDGQYVVS-GSGDGTLHAWNINT--RNE--VACWNGNI------GVVACLKWAPRRAMFVAAS---SVLSFWIPN 250 (271)
Q Consensus 186 ~~~~~~~~~l~~-~~~dg~i~iwd~~~--~~~--~~~~~~~~------~~v~~~~~s~~~~~l~~~~---~~v~iw~~~ 250 (271)
++|+|||+++++ ...++.+.+|++.. ++. +..+.... ..+..++|+|||++|+.++ +.|.+|++.
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 999999997666 45678999999874 443 22332222 4588999999999775443 789999986
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=171.77 Aligned_cols=195 Identities=11% Similarity=0.051 Sum_probs=145.4
Q ss_pred eeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-----CcceEEEcCCCCEEEEEec---------CCeEE
Q 024185 50 GLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-----GRPTVAFDQQGLVFAVAME---------AGAIK 115 (271)
Q Consensus 50 ~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~---------d~~i~ 115 (271)
.+.|+|++++ + ..+.|+.|++||+.+++....+..+ .+..++|||||++|++++. ++.|+
T Consensus 20 ~~~~s~dg~~-----~-~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 20 FPNWISGQEY-----L-HQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCEESSSSEE-----E-EECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccEECCCCeE-----E-EEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence 5789999965 3 3346999999999999987777655 2667999999999998876 68999
Q ss_pred EEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEee-cCCCC--------------
Q 024185 116 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSP-------------- 180 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~-------------- 180 (271)
+||+.+++. .....+ ...+..++|||||+.|+++. ++.|++||+.+++..+... .+...
T Consensus 94 ~~d~~~g~~--~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~ 167 (719)
T 1z68_A 94 IYDLSNGEF--VRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEM 167 (719)
T ss_dssp EEETTTTEE--CCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHT
T ss_pred EEECCCCcc--ccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeec
Confidence 999988763 000222 24688899999999999886 7899999998887654321 11110
Q ss_pred -CceeeEEECCCCCEEEEecCCC----------------------------------cEEEEEcCCceeE---E-----E
Q 024185 181 -NTNTEATFTPDGQYVVSGSGDG----------------------------------TLHAWNINTRNEV---A-----C 217 (271)
Q Consensus 181 -~~v~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~---~-----~ 217 (271)
....+++|+|||++|++++.|. .|++||+.+++.. . .
T Consensus 168 ~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 247 (719)
T 1z68_A 168 LATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAM 247 (719)
T ss_dssp TCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHH
T ss_pred ccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCcc
Confidence 0124799999999999887542 7889999988753 2 1
Q ss_pred ecCCcceeEEEEEecCCcEEEEeC------CeEEEEc----CCCCCCCc
Q 024185 218 WNGNIGVVACLKWAPRRAMFVAAS------SVLSFWI----PNPSSNST 256 (271)
Q Consensus 218 ~~~~~~~v~~~~~s~~~~~l~~~~------~~v~iw~----~~~~~~~~ 256 (271)
+.+|...+.+++|+||++++++.. ..|.+|| ..+++...
T Consensus 248 ~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 248 IASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp HHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred CCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence 346788899999999988777743 2388999 77765543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=172.12 Aligned_cols=225 Identities=13% Similarity=0.092 Sum_probs=158.6
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccc---eEEeeEEecCCchhhhhhhhhhcc---------CceEEEEEec
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKG---IRRGLFLSACLQLMIALCLVLLTT---------ALEYGIFVLM 80 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~~~~~~l~s~~~---------dg~i~iwd~~ 80 (271)
.+++...++.+..++...+. ....+.++.. .+..++|||||+. +++++. ++.|++||++
T Consensus 28 ~~~~~~~d~~i~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~SpDg~~-----la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 28 EYLHQSADNNIVLYNIETGQ----SYTILSNRTMKSVNASNYGLSPDRQF-----VYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp EEEEECTTSCEEEEESSSCC----EEEEECHHHHHTTTCSEEEECTTSSE-----EEEEEEEEECSSSCEEEEEEEEETT
T ss_pred eEEEEcCCCCEEEEEcCCCc----EEEEEccccccccceeeEEECCCCCe-----EEEEecCceeEEeecceEEEEEECC
Confidence 45666668889988887763 2333544443 3788999999998 555554 7999999999
Q ss_pred Cccee--EEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccce-----------------EE
Q 024185 81 LASFQ--GILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV-----------------CD 141 (271)
Q Consensus 81 ~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v-----------------~~ 141 (271)
+++.+ ..+. ..+..++|||||+.|+++. ++.|++||+.+++. ......++...+ .+
T Consensus 99 ~g~~~~~~~l~-~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~---~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 99 NGEFVRGNELP-RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP---FQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTEECCSSCCC-SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC---EECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCccccceecC-cccccceECCCCCEEEEEE-CCeEEEEeCCCCCc---EEEecCCCcCCeEcccccceeeeecccCccc
Confidence 88762 2222 3466699999999999986 78999999988764 111122332222 48
Q ss_pred EEEcCCCcEEEEEecCC----------------------------------eEEEEECCCCeEE--EEe------ecCCC
Q 024185 142 IKFSNDGKSMLLTTTNN----------------------------------NIYVLDAYGGEKR--CGF------SLEPS 179 (271)
Q Consensus 142 ~~~s~~~~~l~~~~~d~----------------------------------~i~~~d~~~~~~~--~~~------~~~~~ 179 (271)
++|||||++|++++.|. .|++||+.+++.. ..+ ..+.
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~- 252 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD- 252 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC-
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc-
Confidence 99999999999987652 7899999887642 111 1233
Q ss_pred CCceeeEEECCCCCEEEEecCC----CcEEEEE----cCCceeEEEe----cCCcceeE-----EEEEecCCcEEEE--e
Q 024185 180 PNTNTEATFTPDGQYVVSGSGD----GTLHAWN----INTRNEVACW----NGNIGVVA-----CLKWAPRRAMFVA--A 240 (271)
Q Consensus 180 ~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~----~~~~~~v~-----~~~~s~~~~~l~~--~ 240 (271)
..+..++|+||++++++.... ..|.+|| ..+++....+ .+|...+. .+.|+|||+.++. +
T Consensus 253 -~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 331 (719)
T 1z68_A 253 -YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFS 331 (719)
T ss_dssp -EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEE
T ss_pred -ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEE
Confidence 348899999998877764332 3488999 8777765544 46777776 8899999996554 3
Q ss_pred C----CeEEEEcCCCCC
Q 024185 241 S----SVLSFWIPNPSS 253 (271)
Q Consensus 241 ~----~~v~iw~~~~~~ 253 (271)
. ..|.+||+.+++
T Consensus 332 ~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 332 DKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp CTTSCEEEEEESSCSTT
T ss_pred ccCCceEEEEEECCCCc
Confidence 2 358888887765
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-20 Score=169.21 Aligned_cols=195 Identities=8% Similarity=0.028 Sum_probs=157.1
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-------------CcceEEEc-CCCCEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-------------GRPTVAFD-QQGLVFA 106 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~~~~~~-~~~~~l~ 106 (271)
+..+.. +...+|+|+|+. ++.+ .++.|++||++..+ +..+..+ .+..++|+ |||++|+
T Consensus 241 l~~~~~-~~~~~~SpDG~~-----la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la 312 (1045)
T 1k32_A 241 HTSFTD-YYPRHLNTDGRR-----ILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIA 312 (1045)
T ss_dssp CCCCCS-SCEEEEEESSSC-----EEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEE
T ss_pred ecCCCC-cceeeEcCCCCE-----EEEE-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEE
Confidence 334433 455799999997 4444 58999999995443 3355442 35679999 9999999
Q ss_pred EEecCCeEEEEeCCCCCCCcceEEEecCCcc-ceEEEEEcCCCcEEEEEecCCeEE-EEECCCCeEEEEeecCCCCCcee
Q 024185 107 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA-EVCDIKFSNDGKSMLLTTTNNNIY-VLDAYGGEKRCGFSLEPSPNTNT 184 (271)
Q Consensus 107 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~-~~d~~~~~~~~~~~~~~~~~~v~ 184 (271)
+++ ++.+++|+..+++ ...+..|.. .+..++|+ ||+.+++++.++.+. +||+.+++... +..+. ..+.
T Consensus 313 ~~~-~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~--~~~~ 382 (1045)
T 1k32_A 313 FVS-RGQAFIQDVSGTY-----VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENL--GNVF 382 (1045)
T ss_dssp EEE-TTEEEEECTTSSB-----EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCC--CSEE
T ss_pred EEE-cCEEEEEcCCCCc-----eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCc--ccee
Confidence 888 7899999998765 334566777 89999999 999999999888899 99998776543 33443 3488
Q ss_pred eEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--C----------eEEEEcCCCC
Q 024185 185 EATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--S----------VLSFWIPNPS 252 (271)
Q Consensus 185 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~----------~v~iw~~~~~ 252 (271)
.++|+|||++|++++.++.|++||+.+++......+|...+.+++|+|||++|++++ + .|++||+.++
T Consensus 383 ~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g 462 (1045)
T 1k32_A 383 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR 462 (1045)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred eeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence 999999999999999999999999999998888878988999999999999998775 4 7999999887
Q ss_pred C
Q 024185 253 S 253 (271)
Q Consensus 253 ~ 253 (271)
+
T Consensus 463 ~ 463 (1045)
T 1k32_A 463 K 463 (1045)
T ss_dssp E
T ss_pred c
Confidence 6
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-20 Score=162.57 Aligned_cols=192 Identities=11% Similarity=0.066 Sum_probs=145.3
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCc-----ce--EEEcCCCCEEEEEecC---------
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGR-----PT--VAFDQQGLVFAVAMEA--------- 111 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~d--------- 111 (271)
...+.|+|++++ ++++ |+.|++||+.+++....+..+.. .. ++|||||++|+.++.+
T Consensus 19 ~~~~~w~~dg~~-----~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 19 LYSLRWISDHEY-----LYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCEEECSSSEE-----EEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred ccccEECCCCcE-----EEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 446899999987 5554 99999999999998877776642 22 7899999999998865
Q ss_pred CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCC----------
Q 024185 112 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN---------- 181 (271)
Q Consensus 112 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---------- 181 (271)
+.+.+||+.+++. ..+..|...+..++|||||+.|+.+. ++.|++||+.+++..+ +.......
T Consensus 92 ~~~~~~d~~~~~~-----~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v 164 (740)
T 4a5s_A 92 ASYDIYDLNKRQL-----ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWV 164 (740)
T ss_dssp EEEEEEETTTTEE-----CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCHH
T ss_pred eEEEEEECCCCcE-----EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE-EcCCCCccceecCccccc
Confidence 5678999998773 33556778899999999999999885 6899999998877544 22111111
Q ss_pred -------ceeeEEECCCCCEEEEecCCC------------------------------------cEEEEEcCC---ce--
Q 024185 182 -------TNTEATFTPDGQYVVSGSGDG------------------------------------TLHAWNINT---RN-- 213 (271)
Q Consensus 182 -------~v~~~~~~~~~~~l~~~~~dg------------------------------------~i~iwd~~~---~~-- 213 (271)
....+.|||||++|+.++.|. .|++||+.+ ++
T Consensus 165 ~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~ 244 (740)
T 4a5s_A 165 YEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA 244 (740)
T ss_dssp HHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC
T ss_pred ccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc
Confidence 123489999999999875321 588899988 73
Q ss_pred eEEEec------CCcceeEEEEEecCCcEEEEeC------CeEEEEcCCCCC
Q 024185 214 EVACWN------GNIGVVACLKWAPRRAMFVAAS------SVLSFWIPNPSS 253 (271)
Q Consensus 214 ~~~~~~------~~~~~v~~~~~s~~~~~l~~~~------~~v~iw~~~~~~ 253 (271)
....+. +|...+..++|+|||+.++... ..|++||+.+++
T Consensus 245 ~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 245 TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 233343 3778899999999999766552 359999998887
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-18 Score=138.31 Aligned_cols=201 Identities=10% Similarity=0.041 Sum_probs=139.6
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEec-CcceeEEEe--cCC-cceEEEcCCCCE--EEEEe----------
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM-LASFQGILR--LRG-RPTVAFDQQGLV--FAVAM---------- 109 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~--~~~-~~~~~~~~~~~~--l~~~~---------- 109 (271)
.....++++|++++ +++++.+ .|.+|++. +++...... .++ ...++|+|+|++ ++++.
T Consensus 40 ~~~~~~a~spdg~~-----l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 113 (365)
T 1jof_A 40 EPISWMTFDHERKN-----IYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANP 113 (365)
T ss_dssp CCCSEEEECTTSSE-----EEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred CCCcEEEECCCCCE-----EEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccce
Confidence 35667999999997 5566666 89999997 777654332 222 445899999995 44443
Q ss_pred ---cCCeEEEEeCCC-CCCCcceEEEe--cCCccceEEEEEcCCCcEEEEEec-CCeEEEEECC-CCeEEE--EeecCCC
Q 024185 110 ---EAGAIKLFDSRS-YDKGPFDTFLV--GGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAY-GGEKRC--GFSLEPS 179 (271)
Q Consensus 110 ---~d~~i~i~d~~~-~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~-~~~~~~--~~~~~~~ 179 (271)
.++.+.+|++.. ++. ...... ..+...+.+++|+|||++++++.. ++.|++||+. +++... .+.....
T Consensus 114 ~~~~~g~v~v~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~ 191 (365)
T 1jof_A 114 FYKFAGYGNVFSVSETGKL--EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP 191 (365)
T ss_dssp ESSSCCEEEEEEECTTCCE--EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred eecCCceEEEEccCCCCcC--cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC
Confidence 688999999974 442 111111 124567899999999998887764 6899999998 676532 2332111
Q ss_pred CCceeeEEECCCCCEEEEecC-CCcEEEEEcC--CceeE---EEe---c----CCcc------eeEEEE-EecCCcEEEE
Q 024185 180 PNTNTEATFTPDGQYVVSGSG-DGTLHAWNIN--TRNEV---ACW---N----GNIG------VVACLK-WAPRRAMFVA 239 (271)
Q Consensus 180 ~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~~~---~~~---~----~~~~------~v~~~~-~s~~~~~l~~ 239 (271)
...+..++|+|||+++++++. ++.+.+|++. +++.. ..+ . +|.. .+..++ |+|||++|++
T Consensus 192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v 271 (365)
T 1jof_A 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence 234888999999999988765 6899999875 45542 222 1 1222 578999 9999998877
Q ss_pred eC---C-----eEEEEcCC-CCCC
Q 024185 240 AS---S-----VLSFWIPN-PSSN 254 (271)
Q Consensus 240 ~~---~-----~v~iw~~~-~~~~ 254 (271)
++ + .|.+|+++ ++++
T Consensus 272 ~~~~~~~~~~~~i~v~~~~~~g~~ 295 (365)
T 1jof_A 272 SSRANKFELQGYIAGFKLRDCGSI 295 (365)
T ss_dssp EEEESSTTSCCEEEEEEECTTSCE
T ss_pred ECCCCCCCCCCeEEEEEECCCCCE
Confidence 64 3 79999986 4553
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-17 Score=134.16 Aligned_cols=199 Identities=15% Similarity=0.152 Sum_probs=133.5
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccC----ceEEEEEecC--cce--eEEEecCC--cceEEEcCCCCEEEEEe-cCC
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTA----LEYGIFVLML--ASF--QGILRLRG--RPTVAFDQQGLVFAVAM-EAG 112 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~d----g~i~iwd~~~--~~~--~~~~~~~~--~~~~~~~~~~~~l~~~~-~d~ 112 (271)
+......++++|+++. +++++.+ +.+.+|+++. ++. +.....+. ...+++ ++++|++++ .++
T Consensus 48 ~~~~p~~l~~spdg~~-----l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~ 120 (361)
T 3scy_A 48 EVANPSYLIPSADGKF-----VYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGG 120 (361)
T ss_dssp ECSCCCSEEECTTSSE-----EEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTT
T ss_pred cCCCCceEEECCCCCE-----EEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCC
Confidence 5566777999999997 5555554 8999999875 433 23333333 233666 888887776 578
Q ss_pred eEEEEeCCCCCC-Ccc-eEEEecC--------CccceEEEEEcCCCcEEEEEec-CCeEEEEECCCCeE------E----
Q 024185 113 AIKLFDSRSYDK-GPF-DTFLVGG--------DTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEK------R---- 171 (271)
Q Consensus 113 ~i~i~d~~~~~~-~~~-~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~------~---- 171 (271)
.+.+|++..... ... ......+ +...+.+++|+|+|+++++++. ++.+++|++..... +
T Consensus 121 ~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~ 200 (361)
T 3scy_A 121 SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG 200 (361)
T ss_dssp EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence 999999975432 111 1111111 1234588999999997776654 88999998875431 1
Q ss_pred --EEeecCCCCCceeeEEECCCCCEEEEec-CCCcEEEEEcCCcee--EEEe---cCCcceeEEEEEecCCcEEEEeC--
Q 024185 172 --CGFSLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRNE--VACW---NGNIGVVACLKWAPRRAMFVAAS-- 241 (271)
Q Consensus 172 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~---~~~~~~v~~~~~s~~~~~l~~~~-- 241 (271)
....... ......++|+|||+++++++ .++.|.+||+.+++. +..+ ..+......++|+|||++|++++
T Consensus 201 ~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 201 TPEAFKVAP-GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp EEEEEECCT-TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred cccceecCC-CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 1222221 23477899999999887776 589999999987754 3333 22334568999999999886654
Q ss_pred --CeEEEEcCC
Q 024185 242 --SVLSFWIPN 250 (271)
Q Consensus 242 --~~v~iw~~~ 250 (271)
+.+.+|+++
T Consensus 280 ~~~~i~v~~~~ 290 (361)
T 3scy_A 280 KADGVAIFKVD 290 (361)
T ss_dssp SSCEEEEEEEC
T ss_pred CCCEEEEEEEc
Confidence 469999986
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-18 Score=137.69 Aligned_cols=203 Identities=11% Similarity=0.021 Sum_probs=144.5
Q ss_pred EEcccccceEEe-----eEEecCCchhhhhhhhhhcc-Cc--eEEEEEecCcceeEEEecCCcc--eEEEcCCCCEEEEE
Q 024185 39 EFFATSKGIRRG-----LFLSACLQLMIALCLVLLTT-AL--EYGIFVLMLASFQGILRLRGRP--TVAFDQQGLVFAVA 108 (271)
Q Consensus 39 ~~~~~~~~~v~~-----~~~s~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~ 108 (271)
..+..+...... ..|+|+|+. ++.++. ++ .|.+||+++++..+....+... ...|+||++.|+.+
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~-----l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~ 98 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSK-----LLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYV 98 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCE-----EEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEE
T ss_pred EEecCCcccccchhhcCccCCCCCCE-----EEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEE
Confidence 335555555555 789999998 444444 66 4888899888877766666433 47899999999999
Q ss_pred ecCCeEEEEeCCCCCCCcceEEEecCCccceEEE--EEcCCCcEEEEEe----------------------cCCeEEEEE
Q 024185 109 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI--KFSNDGKSMLLTT----------------------TNNNIYVLD 164 (271)
Q Consensus 109 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~~~----------------------~d~~i~~~d 164 (271)
+.++.+++||+.+++. ......+...+... .++|++++++... .+..|++||
T Consensus 99 ~~~~~l~~~d~~~g~~----~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 99 KDGRNLMRVDLATLEE----NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD 174 (388)
T ss_dssp ETTTEEEEEETTTCCE----EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred eCCCeEEEEECCCCcc----eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence 9999999999998874 22333344444333 3489999887432 346899999
Q ss_pred CCCCeEEEEeecCCCCCceeeEEECC-CCCEEEEecCC------CcEEEEEcCCceeEEEecCCc--ceeEEEEEecCCc
Q 024185 165 AYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVSGSGD------GTLHAWNINTRNEVACWNGNI--GVVACLKWAPRRA 235 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~ 235 (271)
+.+++...... +.. .+..+.|+| ||+.++....+ ..|.++|...++. ..+..+. ..+..++|+|||+
T Consensus 175 ~~~g~~~~l~~-~~~--~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 175 LKTGESTVILQ-ENQ--WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp TTTCCEEEEEE-ESS--CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSS
T ss_pred CCCCceEEeec-CCc--cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCC
Confidence 99887654433 333 378899999 99988876653 3788888765544 3443343 3578899999999
Q ss_pred EEEEeC---C----eEEEEcCCCCCC
Q 024185 236 MFVAAS---S----VLSFWIPNPSSN 254 (271)
Q Consensus 236 ~l~~~~---~----~v~iw~~~~~~~ 254 (271)
.|+..+ + .|.+||+.+++.
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred EEEEEecCCCCCcceEEEEecCCCce
Confidence 776654 1 299999998864
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-16 Score=124.89 Aligned_cols=226 Identities=10% Similarity=0.122 Sum_probs=157.0
Q ss_pred eeEEee-ecceeeEEEEeeccceeeEEEEEcc------cccceEEeeEEe-cCCchhhhhhhhhhc-cCceEEEEEecCc
Q 024185 12 QALLFA-RQNIILILLESLCGIYQCMIIEFFA------TSKGIRRGLFLS-ACLQLMIALCLVLLT-TALEYGIFVLMLA 82 (271)
Q Consensus 12 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~s-~~~~~~~~~~l~s~~-~dg~i~iwd~~~~ 82 (271)
..++++ ..++.+..++.. + .....+. .+......+++. +++.. +++.. .++.|++|| .++
T Consensus 41 g~l~v~~~~~~~i~~~d~~-g----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l-----~v~~~~~~~~i~~~d-~~g 109 (286)
T 1q7f_A 41 NDIIVADTNNHRIQIFDKE-G----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDI-----IVTERSPTHQIQIYN-QYG 109 (286)
T ss_dssp CCEEEEEGGGTEEEEECTT-S----CEEEEECCBSSSTTCBSSEEEEEEETTTTEE-----EEEECGGGCEEEEEC-TTS
T ss_pred CCEEEEECCCCEEEEECCC-C----cEEEEecccCCCcccccCceEEEEEcCCCeE-----EEEcCCCCCEEEEEC-CCC
Confidence 445555 346677777654 3 1122232 233467788884 67765 34443 388999999 567
Q ss_pred ceeEEEecC---CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCe
Q 024185 83 SFQGILRLR---GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN 159 (271)
Q Consensus 83 ~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 159 (271)
+.+..+... ....++++|+++.+++...++.|.+||... +. ........+...+..++++|+|+.+++...++.
T Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~--~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 110 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NV--LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE--EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CE--EEEeCCCCccCCcEEEEECCCCCEEEEECCCCE
Confidence 766666432 345699999999777777789999999653 32 222222244567899999999997777777999
Q ss_pred EEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC-cEEEEEcCCceeEEEecCCc--ceeEEEEEecCCcE
Q 024185 160 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG-TLHAWNINTRNEVACWNGNI--GVVACLKWAPRRAM 236 (271)
Q Consensus 160 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~ 236 (271)
|++||. +++.+..+........+..++++|+|+++++...++ .|.+||. +++.+..+..+. ..+.+++++|+|++
T Consensus 187 i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l 264 (286)
T 1q7f_A 187 VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV 264 (286)
T ss_dssp EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred EEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcE
Confidence 999996 456666665433223478899999999888888776 9999995 567766665443 24679999999998
Q ss_pred EEEeC-CeEEEEcCCCCC
Q 024185 237 FVAAS-SVLSFWIPNPSS 253 (271)
Q Consensus 237 l~~~~-~~v~iw~~~~~~ 253 (271)
+++.. +.|++|++....
T Consensus 265 ~vs~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 265 VLASKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEEETTTEEEEEECSCCC
T ss_pred EEECCCCeEEEEEccccc
Confidence 88765 889999986543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-19 Score=155.58 Aligned_cols=228 Identities=11% Similarity=0.084 Sum_probs=153.1
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccce-----EEeeEEecCCchhhhhhhhhhccC---------ceEEEEE
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGI-----RRGLFLSACLQLMIALCLVLLTTA---------LEYGIFV 78 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~~~~~~l~s~~~d---------g~i~iwd 78 (271)
.+++.. ++.+.+++...+. ....+.++... .....+||||+. ++.++.+ +.+.+||
T Consensus 29 ~~~~~~-~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Spdg~~-----l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 29 EYLYKQ-ENNILVFNAEYGN----SSVFLENSTFDEFGHSINDYSISPDGQF-----ILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp EEEEEE-TTEEEEEETTTCC----EEEEECTTTTTTCCSCCCEEEECTTSSE-----EEEEEEEEECSSSCEEEEEEEEE
T ss_pred cEEEEc-CCcEEEEECCCCc----eEEEEechhhhhhcccccceEECCCCCE-----EEEEECCeeeEEEccceEEEEEE
Confidence 344443 8889999887773 22345555432 233788999998 5566665 5677999
Q ss_pred ecCcceeEEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccce-----------------
Q 024185 79 LMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV----------------- 139 (271)
Q Consensus 79 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v----------------- 139 (271)
+++++... +..+ .....+|||||+.||.+. ++.|++||..+++. ......++...+
T Consensus 99 ~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~---~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 99 LNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS---YRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp TTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC---EECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred CCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCce---EEEcCCCCccceecCcccccccchhcCCC
Confidence 99988654 3332 355699999999999885 78999999988764 122223333222
Q ss_pred EEEEEcCCCcEEEEEecCC------------------------------------eEEEEECCC---Ce--EEEEeecC-
Q 024185 140 CDIKFSNDGKSMLLTTTNN------------------------------------NIYVLDAYG---GE--KRCGFSLE- 177 (271)
Q Consensus 140 ~~~~~s~~~~~l~~~~~d~------------------------------------~i~~~d~~~---~~--~~~~~~~~- 177 (271)
..+.|||||++|+.++.|. +|++||+.+ ++ ....+...
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~ 253 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA 253 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence 3589999999999875321 588899988 73 12233220
Q ss_pred ---CCCCceeeEEECCCCCEEEEecC----CCcEEEEEcCCce----eE--EEe--cCCcceeE-----EEEEecCCcEE
Q 024185 178 ---PSPNTNTEATFTPDGQYVVSGSG----DGTLHAWNINTRN----EV--ACW--NGNIGVVA-----CLKWAPRRAMF 237 (271)
Q Consensus 178 ---~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~----~~--~~~--~~~~~~v~-----~~~~s~~~~~l 237 (271)
.....+..++|+|||+.++.... +..|.+||+.+++ +. ..+ .+|...+. .+.|+|||+.+
T Consensus 254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l 333 (740)
T 4a5s_A 254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF 333 (740)
T ss_dssp HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence 12245888999999997665432 3479999999887 21 112 44665554 78999999977
Q ss_pred E-EeC-----CeEEEEcCCCCCCC
Q 024185 238 V-AAS-----SVLSFWIPNPSSNS 255 (271)
Q Consensus 238 ~-~~~-----~~v~iw~~~~~~~~ 255 (271)
+ ..+ ..|.+||..+++..
T Consensus 334 ~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 334 YKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp EEEEECTTSCEEEEEEETTCSSCE
T ss_pred EEEEEcCCCceEEEEEECCCCceE
Confidence 6 554 45999998876654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-17 Score=131.87 Aligned_cols=224 Identities=10% Similarity=0.034 Sum_probs=143.2
Q ss_pred ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhh-----hhhccCceEEEEEecCcceeEEEecC---
Q 024185 20 NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCL-----VLLTTALEYGIFVLMLASFQGILRLR--- 91 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l-----~s~~~dg~i~iwd~~~~~~~~~~~~~--- 91 (271)
++.+..++...+. ....+..+... .++++|+++++++..- ..|..++.|.+||..+++.+..+...
T Consensus 30 d~~v~v~D~~t~~----~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 30 ESRVHVYDYTNGK----FLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp GCEEEEEETTTCC----EEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred cCeEEEEECCCCe----EEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence 4578888876652 22334444444 7999999998433100 00124788999999999988887643
Q ss_pred -----CcceEEEcCCCCEEEEEec--CCeEEEEeCCCCCCCcceEEE-ecCCccceEEEEEcCCC---------------
Q 024185 92 -----GRPTVAFDQQGLVFAVAME--AGAIKLFDSRSYDKGPFDTFL-VGGDTAEVCDIKFSNDG--------------- 148 (271)
Q Consensus 92 -----~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~--------------- 148 (271)
....++++|||++|+++.. ++.|.+||+.+++. ... +. .. ....+.+.|++
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~----~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~ 177 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY----VEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLT 177 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE----EEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEE
T ss_pred cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE----EEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEE
Confidence 2345999999999999864 57999999988764 222 11 10 11112222322
Q ss_pred ----------------------------------cEEEEEecCCeEEEEECCCCeE--EEEeecCC--------CCCcee
Q 024185 149 ----------------------------------KSMLLTTTNNNIYVLDAYGGEK--RCGFSLEP--------SPNTNT 184 (271)
Q Consensus 149 ----------------------------------~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~--------~~~~v~ 184 (271)
..++..+.++.+.++|+...+. ...+.... .+....
T Consensus 178 v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~ 257 (361)
T 2oiz_A 178 INLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYN 257 (361)
T ss_dssp EEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSS
T ss_pred EEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCee
Confidence 2222233344455555443221 11111000 001111
Q ss_pred eEEECCCCCEEEEecC-----------CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCCC
Q 024185 185 EATFTPDGQYVVSGSG-----------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPS 252 (271)
Q Consensus 185 ~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~ 252 (271)
.++|+|+++.++++.. .+.|.+||+.+++.+.++..+. +.+++|+|||++|++++ ++|.+||..++
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~ 335 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQP 335 (361)
T ss_dssp CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSSS
T ss_pred EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCCC
Confidence 2789999888876543 3479999999999999998776 89999999999999887 89999999998
Q ss_pred --CCCcC
Q 024185 253 --SNSTD 257 (271)
Q Consensus 253 --~~~~~ 257 (271)
+....
T Consensus 336 ~l~~~~~ 342 (361)
T 2oiz_A 336 EPKLLRT 342 (361)
T ss_dssp SCEEEEE
T ss_pred cceeeEE
Confidence 65554
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-18 Score=137.35 Aligned_cols=231 Identities=10% Similarity=0.020 Sum_probs=154.4
Q ss_pred ecceeEEeeec-ce--eeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee
Q 024185 9 PITQALLFARQ-NI--ILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ 85 (271)
Q Consensus 9 ~~~~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 85 (271)
|..+.+++... ++ .+..++...+ ...+...++...+....|+|+++. |+.++.++.+++||+.+++..
T Consensus 45 pDg~~l~~~~~~~g~~~l~~~d~~~g----~~~~lt~~~~~~~~~~~~spdg~~-----l~~~~~~~~l~~~d~~~g~~~ 115 (388)
T 3pe7_A 45 RDGSKLLFGGAFDGPWNYYLLDLNTQ----VATQLTEGRGDNTFGGFLSPDDDA-----LFYVKDGRNLMRVDLATLEEN 115 (388)
T ss_dssp TTSCEEEEEECTTSSCEEEEEETTTC----EEEECCCSSCBCSSSCEECTTSSE-----EEEEETTTEEEEEETTTCCEE
T ss_pred CCCCEEEEEEcCCCCceEEEEeCCCC----ceEEeeeCCCCCccceEEcCCCCE-----EEEEeCCCeEEEEECCCCcce
Confidence 34456777765 44 4666666555 333445555555556789999998 677778889999999999877
Q ss_pred EEEecCCcce----EEEcCCCCEEEEEe----------------------cCCeEEEEeCCCCCCCcceEEEecCCccce
Q 024185 86 GILRLRGRPT----VAFDQQGLVFAVAM----------------------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEV 139 (271)
Q Consensus 86 ~~~~~~~~~~----~~~~~~~~~l~~~~----------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v 139 (271)
..+..+.... ..++|++++++... .+..|++||+.+++. ..+..+...+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~l~~~~~~~ 190 (388)
T 3pe7_A 116 VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-----TVILQENQWL 190 (388)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-----EEEEEESSCE
T ss_pred eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce-----EEeecCCccc
Confidence 6666554322 34589999887432 346899999998763 3333455678
Q ss_pred EEEEEcC-CCcEEEEEecC------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CC----cEEEE
Q 024185 140 CDIKFSN-DGKSMLLTTTN------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG----TLHAW 207 (271)
Q Consensus 140 ~~~~~s~-~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~iw 207 (271)
..++|+| ||+.|+....+ ..|.++|...++. ..+..+.....+..+.|+|||+.|+..+. ++ .|++|
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 269 (388)
T 3pe7_A 191 GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSA 269 (388)
T ss_dssp EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEE
T ss_pred cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEE
Confidence 9999999 99999887753 3788888766543 33333332123677899999997765443 22 39999
Q ss_pred EcCCceeE--EEecCCcce---eEEEEEecCCcEEEEe---------C--CeEEEEcCCCCCC
Q 024185 208 NINTRNEV--ACWNGNIGV---VACLKWAPRRAMFVAA---------S--SVLSFWIPNPSSN 254 (271)
Q Consensus 208 d~~~~~~~--~~~~~~~~~---v~~~~~s~~~~~l~~~---------~--~~v~iw~~~~~~~ 254 (271)
|+.+++.. ..+.++... .....|+|||+.|+.. . ..|.+||+.+++.
T Consensus 270 d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 270 DPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp CTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred ecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 99988753 333331111 1224799999987742 2 5799999988754
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-17 Score=129.35 Aligned_cols=216 Identities=10% Similarity=0.036 Sum_probs=154.1
Q ss_pred eeEEEEeeccceeeEEEEEcc-cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-eeEEEec---------
Q 024185 22 ILILLESLCGIYQCMIIEFFA-TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-FQGILRL--------- 90 (271)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~--------- 90 (271)
.+..++...+. ..+.+. .+-.....++++|+|+. +++...++.|++||.+... .+..+..
T Consensus 70 ~i~~~d~~~g~----~~~~~~~~~~~~p~gia~d~~g~l-----~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~ 140 (329)
T 3fvz_A 70 TILVIDPNNAE----ILQSSGKNLFYLPHGLSIDTDGNY-----WVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQN 140 (329)
T ss_dssp CEEEECTTTCC----EEEEECTTTCSSEEEEEECTTSCE-----EEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTT
T ss_pred cEEEEECCCCe----EEeccCCCccCCceEEEECCCCCE-----EEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCcc
Confidence 56777665552 222232 34456778999999996 6677888999999986542 4555521
Q ss_pred C--CcceEEEcC-CCCEEEEEe-cCCeEEEEeCCCCCCCcceEEEec----------CCccceEEEEEcCC-CcEEEEEe
Q 024185 91 R--GRPTVAFDQ-QGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLVG----------GDTAEVCDIKFSND-GKSMLLTT 155 (271)
Q Consensus 91 ~--~~~~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~-~~~l~~~~ 155 (271)
+ ....++++| +++.+++.+ .++.|++||. +++. ...+. ++......++++|+ +.++++..
T Consensus 141 ~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~----~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~ 215 (329)
T 3fvz_A 141 HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKF----VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR 215 (329)
T ss_dssp CCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCE----EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET
T ss_pred ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCE----EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC
Confidence 1 234599999 777777775 6899999994 3442 22222 12234889999998 77667777
Q ss_pred cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECC------CCCEEEEecCCCcEEEEEcCCceeEEEec---CCcceeE
Q 024185 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP------DGQYVVSGSGDGTLHAWNINTRNEVACWN---GNIGVVA 226 (271)
Q Consensus 156 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~ 226 (271)
.++.|++||..+++.+..+........+..++++| +|+..++...+..|++||..+++.+..+. ++...+.
T Consensus 216 ~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~ 295 (329)
T 3fvz_A 216 ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPH 295 (329)
T ss_dssp TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEE
T ss_pred CCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCee
Confidence 78999999998899888876544444578899999 33333333445689999999999998873 5666789
Q ss_pred EEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 227 CLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 227 ~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
+++++|+|.++++.. +.|++|+++.
T Consensus 296 ~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 296 DIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 999999997777765 7799999865
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-17 Score=142.59 Aligned_cols=233 Identities=13% Similarity=-0.008 Sum_probs=152.8
Q ss_pred eccee-EEeeec-ceeeEEEEee--c-cceeeEEEEEccc-----ccceEEeeEEecCCchhhhhhhhhhccC-------
Q 024185 9 PITQA-LLFARQ-NIILILLESL--C-GIYQCMIIEFFAT-----SKGIRRGLFLSACLQLMIALCLVLLTTA------- 71 (271)
Q Consensus 9 ~~~~~-l~~~~~-~~~~~~~~~~--~-~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~~~~~~l~s~~~d------- 71 (271)
|..+. +++... +..+..++.. . +. .. .+.. +...+..++|+|+|+. |++++.+
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~--~~---~l~~~~~~~~~~~~~~~~~spDg~~-----l~~~~~~~~~~~~~ 157 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAV--PR---PLTPVSAVGGGLRWADPVLLPERGE-----VWCMAEEFTGEGPS 157 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCC--CE---ECSCCCCSTTCEEEEEEEEETTTTE-----EEEEEEEECSSSTT
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCC--CE---eccCCccCCCCccccCcEECCCCCE-----EEEEEecccCCCCC
Confidence 55666 666643 4566666543 1 21 11 1333 5667888999999998 5566665
Q ss_pred ---ceEEEEEecC------cceeEEE-ecCC-cceEEEcCCCCEEEEEecC--------CeEEEEeCC-CCCCCcceEEE
Q 024185 72 ---LEYGIFVLML------ASFQGIL-RLRG-RPTVAFDQQGLVFAVAMEA--------GAIKLFDSR-SYDKGPFDTFL 131 (271)
Q Consensus 72 ---g~i~iwd~~~------~~~~~~~-~~~~-~~~~~~~~~~~~l~~~~~d--------~~i~i~d~~-~~~~~~~~~~~ 131 (271)
..|++||+.+ ++..... ..+. ...++|+|||++|+.++.+ ..|++||+. +++.... ...
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~-~~l 236 (662)
T 3azo_A 158 DVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADT-RTL 236 (662)
T ss_dssp CEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEE-EEE
T ss_pred CceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccccc-EEe
Confidence 6899999988 5554333 2232 3448999999999988754 379999998 4521001 222
Q ss_pred ecCCccceEEEEEcCCCcEEEEEecCC--eEEEEECCCCeEEEEeecCCCC------CceeeEEECCCCCEEEEecCCCc
Q 024185 132 VGGDTAEVCDIKFSNDGKSMLLTTTNN--NIYVLDAYGGEKRCGFSLEPSP------NTNTEATFTPDGQYVVSGSGDGT 203 (271)
Q Consensus 132 ~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~ 203 (271)
..+|...+..++|+|||+++++++.++ .|++||+.+++.......+... ..+..++|+|+++++++++. +.
T Consensus 237 ~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~ 315 (662)
T 3azo_A 237 LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA 315 (662)
T ss_dssp EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS
T ss_pred CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc
Confidence 234567899999999999777777777 7777787677654433322111 01456899999999999998 99
Q ss_pred EEEE--EcCCceeEEEecCCcceeEEE-EEecCCcEEEEeC----CeEEEEcCCCCCC
Q 024185 204 LHAW--NINTRNEVACWNGNIGVVACL-KWAPRRAMFVAAS----SVLSFWIPNPSSN 254 (271)
Q Consensus 204 i~iw--d~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~----~~v~iw~~~~~~~ 254 (271)
+++| |+.+++ +..+..|...+..+ +++++.-++++++ ..+.+||+.+++.
T Consensus 316 ~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 316 AVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp CEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred cEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 9999 555555 67777777777766 4443332333333 2477777777654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-16 Score=120.79 Aligned_cols=221 Identities=10% Similarity=0.017 Sum_probs=155.5
Q ss_pred EEe-eecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec--
Q 024185 14 LLF-ARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL-- 90 (271)
Q Consensus 14 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-- 90 (271)
+++ +..++.+..++...+ .+.+..+...+.+++++|+++. +++...++.|.+||.++++.......
T Consensus 42 l~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~l~~~~dg~l-----~v~~~~~~~i~~~d~~~g~~~~~~~~~~ 110 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ------LSPEMHPSHHQNGHCLNKQGHL-----IACSHGLRRLERQREPGGEWESIADSFE 110 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC------EEEEESSCSSEEEEEECTTCCE-----EEEETTTTEEEEECSTTCCEEEEECEET
T ss_pred EEEEeCCCCEEEEEECCCC------eEEEECCCCCcceeeECCCCcE-----EEEecCCCeEEEEcCCCCcEEEEeeccC
Confidence 444 455677777776544 2235556677889999999987 55566678999999988875444322
Q ss_pred ----CCcceEEEcCCCCEEEEE----e-------------cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc
Q 024185 91 ----RGRPTVAFDQQGLVFAVA----M-------------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK 149 (271)
Q Consensus 91 ----~~~~~~~~~~~~~~l~~~----~-------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 149 (271)
.....++++|+|+++++. + ..+.|..++.. ++ ...+..+......++|+|+++
T Consensus 111 ~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-----~~~~~~~~~~~~gi~~s~dg~ 184 (296)
T 3e5z_A 111 GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-----LSAPIRDRVKPNGLAFLPSGN 184 (296)
T ss_dssp TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-----EEEEECCCSSEEEEEECTTSC
T ss_pred CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-----EEEeecCCCCCccEEECCCCC
Confidence 124559999999987763 2 13466666665 33 223334556778999999999
Q ss_pred EEEEEecCCeEEEEECC-CCeE---EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCccee
Q 024185 150 SMLLTTTNNNIYVLDAY-GGEK---RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVV 225 (271)
Q Consensus 150 ~l~~~~~d~~i~~~d~~-~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 225 (271)
.+++.+.++.|++||+. +++. ...+ ......+..++++++|++.++. ++.|.+||.. ++.+..+..+.. +
T Consensus 185 ~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~ 258 (296)
T 3e5z_A 185 LLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-T 258 (296)
T ss_dssp EEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-C
T ss_pred EEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-c
Confidence 88666778999999986 5554 2333 2222346679999999976666 7889999986 788888877777 8
Q ss_pred EEEEE-ecCCcEEEEeC-CeEEEEcCCCCCCCcC
Q 024185 226 ACLKW-APRRAMFVAAS-SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 226 ~~~~~-s~~~~~l~~~~-~~v~iw~~~~~~~~~~ 257 (271)
.+++| +|+++.|++++ +.+.-+++++.++++.
T Consensus 259 ~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~~~~ 292 (296)
T 3e5z_A 259 SNLCFGGPEGRTLYMTVSTEFWSIETNVRGLEHH 292 (296)
T ss_dssp CEEEEESTTSCEEEEEETTEEEEEECSCCBCCC-
T ss_pred eeEEEECCCCCEEEEEcCCeEEEEEccccccccc
Confidence 99999 58888777766 7777777777766543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-17 Score=142.70 Aligned_cols=201 Identities=13% Similarity=0.015 Sum_probs=143.1
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhh--ccCceEEEEEecCcceeEEEecCC--cc---------eEEEc--CCCCE-
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLL--TTALEYGIFVLMLASFQGILRLRG--RP---------TVAFD--QQGLV- 104 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~--~~---------~~~~~--~~~~~- 104 (271)
+..|...+..+.+++++.. +++. +.++...||....+.....+..+. +. ...|+ |||++
T Consensus 19 ~~~~~~~~~~~~~s~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVW-----WVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHTCSCCEEEEEETTEEE-----EEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HhhcCCccceeEEcCCeEE-----EEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeE
Confidence 5567788888999987554 4555 668899999965444455554442 22 45555 99998
Q ss_pred EEEEec-CCeEEEEeCC--C-CCCCcceEEEecC-----CccceEEEEEcCCCcEEEEEecC----------CeEEEEEC
Q 024185 105 FAVAME-AGAIKLFDSR--S-YDKGPFDTFLVGG-----DTAEVCDIKFSNDGKSMLLTTTN----------NNIYVLDA 165 (271)
Q Consensus 105 l~~~~~-d~~i~i~d~~--~-~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d----------~~i~~~d~ 165 (271)
|+.++. +..|+++++. + ++ ...+.. |...+.+++|+|||+.|++++.+ ..|++||+
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~ 168 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAV-----PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPL 168 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCC-----CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEET
T ss_pred EEEEECCCCeEEEEcCCCCCCCC-----CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEEC
Confidence 776654 5677777776 3 43 223333 56788999999999999998876 58999999
Q ss_pred CC------CeEEEEee-cCCCCCceeeEEECCCCCEEEEecCC--------CcEEEEEcC-Cc---eeEEEecCCcceeE
Q 024185 166 YG------GEKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGD--------GTLHAWNIN-TR---NEVACWNGNIGVVA 226 (271)
Q Consensus 166 ~~------~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~v~ 226 (271)
.+ ++. ..+. .+. ..+..++|||||++|+.++.+ ..|++||+. ++ +......+|...+.
T Consensus 169 ~~~~~~~~~~~-~~l~~~~~--~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~ 245 (662)
T 3azo_A 169 DGSAAADRSAV-RELSDDAH--RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA 245 (662)
T ss_dssp TSTTTTCGGGS-EESSCSCS--SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred CCCccccCCce-eEEEecCC--CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence 87 554 3343 222 347779999999999987754 379999998 56 44444455567899
Q ss_pred EEEEecCCcEEEEeC--C--eEEEEcCCCCCC
Q 024185 227 CLKWAPRRAMFVAAS--S--VLSFWIPNPSSN 254 (271)
Q Consensus 227 ~~~~s~~~~~l~~~~--~--~v~iw~~~~~~~ 254 (271)
.+.|+|||+++++++ + .|.+||+.+++.
T Consensus 246 ~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~ 277 (662)
T 3azo_A 246 QAEWAPDGSLIVATDRTGWWNLHRVDPATGAA 277 (662)
T ss_dssp EEEECTTSCEEEEECTTSSCEEEEECTTTCCE
T ss_pred ceEECCCCeEEEEECCCCCeEEEEEECCCCce
Confidence 999999999777776 4 677788766653
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-17 Score=134.07 Aligned_cols=228 Identities=14% Similarity=0.041 Sum_probs=147.7
Q ss_pred cceeEEeeecc---eeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 10 ITQALLFARQN---IILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 10 ~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
..+.+++.... ..+..++...+ ...+...++......+.|+|+|+. |+..+.++.+++||+.+++...
T Consensus 46 dG~~l~~~~~~~g~~~l~~~d~~~~----~~~~l~~~~~~~~~~~~~spdg~~-----l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 46 DGKKLLFAGDFDGNRNYYLLNLETQ----QAVQLTEGKGDNTFGGFISTDERA-----FFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp TSCEEEEEECTTSSCEEEEEETTTT----EEEECCCSSCBCTTTCEECTTSSE-----EEEEETTTEEEEEETTTCCEEE
T ss_pred CCCEEEEEEecCCCceEEEEECCCC----cEEEeecCCCCccccceECCCCCE-----EEEEEcCCcEEEEECCCCCcEE
Confidence 33455665432 35555555444 222222233222334789999998 6677778899999999888766
Q ss_pred EEecCCcce---------------------EEEcCCCCEEEEE-----ecCCeEEEEeCCCCCCCcceEEEecCCccceE
Q 024185 87 ILRLRGRPT---------------------VAFDQQGLVFAVA-----MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 140 (271)
Q Consensus 87 ~~~~~~~~~---------------------~~~~~~~~~l~~~-----~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 140 (271)
....+.... ..|+|+++.++.. ..+..|++||+.+++. ..+..+...+.
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~~~~~~~~~~ 191 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL-----EVIHQDTAWLG 191 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE-----EEEEEESSCEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE-----EeeccCCcccc
Confidence 665443211 2457777766554 3456899999988763 22223556789
Q ss_pred EEEEcC-CCcEEEEEecC------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC-----CcEEEEE
Q 024185 141 DIKFSN-DGKSMLLTTTN------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-----GTLHAWN 208 (271)
Q Consensus 141 ~~~~s~-~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd 208 (271)
.+.|+| +++.|+..+.+ ..|.+||+..++... +..+.....+..+.|+|||++|+.++.+ +.|++||
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 270 (396)
T 3c5m_A 192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKAN 270 (396)
T ss_dssp EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEEC
T ss_pred cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEE
Confidence 999999 88877776643 468999987665333 3222212247778999999988776543 4499999
Q ss_pred cCCceeEEEecCCcceeEEEEEec-CCcEEEEeC------------------CeEEEEcCCCCCCC
Q 024185 209 INTRNEVACWNGNIGVVACLKWAP-RRAMFVAAS------------------SVLSFWIPNPSSNS 255 (271)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~------------------~~v~iw~~~~~~~~ 255 (271)
+.+++........ . .. +.|+| ||+++++++ ..|.+||+.+++..
T Consensus 271 ~~~g~~~~l~~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 333 (396)
T 3c5m_A 271 PETLENEEVMVMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ 333 (396)
T ss_dssp TTTCCEEEEEECC-S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC
T ss_pred CCCCCeEEeeeCC-C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE
Confidence 9887754433221 2 23 89999 999887642 57999999887643
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.3e-16 Score=125.66 Aligned_cols=232 Identities=9% Similarity=0.013 Sum_probs=146.8
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEe-------------------eEEecCCchhhhhhhhhhc
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRG-------------------LFLSACLQLMIALCLVLLT 69 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~s~~~~~~~~~~l~s~~ 69 (271)
|..+.+++...+..+..++...+... ..+..+...... ..++|+++.++........
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~ 165 (396)
T 3c5m_A 90 TDERAFFYVKNELNLMKVDLETLEEQ----VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN 165 (396)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEE----EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC
T ss_pred CCCCEEEEEEcCCcEEEEECCCCCcE----EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC
Confidence 44456667766667777776554211 122222222222 4678888874321000125
Q ss_pred cCceEEEEEecCcceeEEEecC-CcceEEEcC-CCCEEEEEecC------CeEEEEeCCCCCCCcceEEEecCC--ccce
Q 024185 70 TALEYGIFVLMLASFQGILRLR-GRPTVAFDQ-QGLVFAVAMEA------GAIKLFDSRSYDKGPFDTFLVGGD--TAEV 139 (271)
Q Consensus 70 ~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~--~~~v 139 (271)
.+..|++||+.+++........ ....+.|+| +++.|+..+.+ ..|.+||+.+++. ..+..+ ...+
T Consensus 166 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~~~~~~ 240 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-----RKIKEHAEGESC 240 (396)
T ss_dssp CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-----EESSCCCTTEEE
T ss_pred CcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-----eEeeccCCCccc
Confidence 7789999999988866555433 355689999 78877776543 3688899876553 222222 2358
Q ss_pred EEEEEcCCCcEEEEEecC-----CeEEEEECCCCeEEEEeecCCCCCceeeEEECC-CCCEEEEec--------------
Q 024185 140 CDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVSGS-------------- 199 (271)
Q Consensus 140 ~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-------------- 199 (271)
..++|+|||++|+.++.+ +.|++||+.+++........ . .. +.|+| ||+++++++
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~---~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~ 315 (396)
T 3c5m_A 241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P---CS-HLMSNFDGSLMVGDGCDAPVDVADADSYN 315 (396)
T ss_dssp EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S---EE-EEEECSSSSEEEEEECCC----------C
T ss_pred cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C---CC-CCccCCCCceEEEecCCcceeeccccccc
Confidence 889999999988877653 45999999888754433221 1 33 88999 999888754
Q ss_pred --CCCcEEEEEcCCceeEEEecCCcc-----------eeEEEEEecCCcEEEEeC---Ce--EEEEcCCCCCCC
Q 024185 200 --GDGTLHAWNINTRNEVACWNGNIG-----------VVACLKWAPRRAMFVAAS---SV--LSFWIPNPSSNS 255 (271)
Q Consensus 200 --~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~---~~--v~iw~~~~~~~~ 255 (271)
.++.|++||+.+++... +..+.. .+..++|+|||+.|+.++ +. +...++.++...
T Consensus 316 ~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 316 IENDPFLYVLNTKAKSAQK-LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp CCCCCEEEEEETTTTBCCE-EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred cCCCCcEEEEecccCceEE-ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence 24689999998877543 433433 256789999999887765 44 555555555443
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-16 Score=123.77 Aligned_cols=205 Identities=13% Similarity=0.100 Sum_probs=151.1
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccC------------------------ceEEEEEecCcceeEEEecC---CcceE
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTA------------------------LEYGIFVLMLASFQGILRLR---GRPTV 96 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~~~---~~~~~ 96 (271)
.-+.+.+++++|+|+. +++...+ +.|.+||.++++.+..+... ....+
T Consensus 22 ~l~~v~~va~d~~G~l-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gi 96 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNL-----VIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGL 96 (329)
T ss_dssp CCSCEEEEEECTTCCE-----EEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEE
T ss_pred ecCCceEEEECCCCCE-----EEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEE
Confidence 3467888999999987 5555555 47999999989887666432 34559
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEe---------cCCccceEEEEEcC-CCcEEEEEe-cCCeEEEEEC
Q 024185 97 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV---------GGDTAEVCDIKFSN-DGKSMLLTT-TNNNIYVLDA 165 (271)
Q Consensus 97 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~~~~~v~~~~~s~-~~~~l~~~~-~d~~i~~~d~ 165 (271)
+++|+|+++++...++.|+.||...... . ...+ .++......++++| ++..+++.+ .++.|++||
T Consensus 97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~-~--~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~- 172 (329)
T 3fvz_A 97 SIDTDGNYWVTDVALHQVFKLDPHSKEG-P--LLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS- 172 (329)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCSSC-C--SEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCeE-E--EEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-
Confidence 9999999888888889999999865421 1 2222 23445789999999 788777776 689999999
Q ss_pred CCCeEEEEeecCCC--------CCceeeEEECCC-CCEEEEecCCCcEEEEEcCCceeEEEec--CCcceeEEEEEecCC
Q 024185 166 YGGEKRCGFSLEPS--------PNTNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAPRR 234 (271)
Q Consensus 166 ~~~~~~~~~~~~~~--------~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~ 234 (271)
.+++.+..+..... -.....++++|+ ++++++...++.|++||..+++.+..+. .+...+.+++|+| +
T Consensus 173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g 251 (329)
T 3fvz_A 173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G 251 (329)
T ss_dssp TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T
T ss_pred CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C
Confidence 66777766643221 123778999999 7777777888999999998899888873 4556788999999 4
Q ss_pred cEEEEeC---------CeEEEEcCCCCCCCcCC
Q 024185 235 AMFVAAS---------SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 235 ~~l~~~~---------~~v~iw~~~~~~~~~~~ 258 (271)
..+.+.+ ..+++|+..+++.....
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 4333332 36999999888766543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-15 Score=117.37 Aligned_cols=195 Identities=11% Similarity=0.113 Sum_probs=142.3
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec--------CCcceEEE-cCCCCEEEEEec-CCe
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL--------RGRPTVAF-DQQGLVFAVAME-AGA 113 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~-~~~~~~l~~~~~-d~~ 113 (271)
+-.....+++++++.. +++...++.|.+||.+ ++.+..+.. .....+++ .++++++++... ++.
T Consensus 28 ~~~~p~~v~~~~~g~l-----~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDI-----IVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp CBSCEEEEEECTTCCE-----EEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred ccCCCceEEECCCCCE-----EEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 3456778999999986 6677788999999986 665655532 12445888 467766655543 789
Q ss_pred EEEEeCCCCCCCcceEEEec-CCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCC
Q 024185 114 IKLFDSRSYDKGPFDTFLVG-GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 114 i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 192 (271)
|.+||. +++. ...+. .+...+..++++|+|+.+++...++.|.+||. +++.+..+........+..++++|+|
T Consensus 102 i~~~d~-~g~~----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g 175 (286)
T 1q7f_A 102 IQIYNQ-YGQF----VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQ 175 (286)
T ss_dssp EEEECT-TSCE----EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSS
T ss_pred EEEECC-CCcE----EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCC
Confidence 999994 4442 22232 33457899999999997777777899999995 46666665432222347889999999
Q ss_pred CEEEEecCCCcEEEEEcCCceeEEEecCC--cceeEEEEEecCCcEEEEeC--C-eEEEEcCCC
Q 024185 193 QYVVSGSGDGTLHAWNINTRNEVACWNGN--IGVVACLKWAPRRAMFVAAS--S-VLSFWIPNP 251 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~--~-~v~iw~~~~ 251 (271)
+++++...++.|++||. +++.+..+..+ ...+.+++++|+|+++++.. + .|.+||.+.
T Consensus 176 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g 238 (286)
T 1q7f_A 176 EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG 238 (286)
T ss_dssp EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred CEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC
Confidence 98888888899999997 56666666443 35678999999999888875 4 899999654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-16 Score=136.06 Aligned_cols=208 Identities=10% Similarity=-0.032 Sum_probs=141.5
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE-ecCCcceEEEcCCCCEEEEEecCCe---------
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL-RLRGRPTVAFDQQGLVFAVAMEAGA--------- 113 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~--------- 113 (271)
+...+..+.|||||+.+++..--.|+....|++||+++++.+... .......++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccc
Confidence 334678899999999843310001222238999999999876543 2333566999999999999887765
Q ss_pred -------EEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-----CCeEEEEECCC------Ce-EEEEe
Q 024185 114 -------IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-----NNNIYVLDAYG------GE-KRCGF 174 (271)
Q Consensus 114 -------i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----d~~i~~~d~~~------~~-~~~~~ 174 (271)
|++|++.+++...........|...+..+.|+|||++|+..+. +..|++||+.+ ++ ....+
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l 282 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL 282 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence 9999998765311122233334556889999999999988765 57899999976 43 34555
Q ss_pred ecCCCCCceeeEEECCCCCEEEEecCC----CcEEEEEcCCcee--EEEecCCcc--eeEEEEEecCCcEEEEeC--C--
Q 024185 175 SLEPSPNTNTEATFTPDGQYVVSGSGD----GTLHAWNINTRNE--VACWNGNIG--VVACLKWAPRRAMFVAAS--S-- 242 (271)
Q Consensus 175 ~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~--~~~~~~~~~--~v~~~~~s~~~~~l~~~~--~-- 242 (271)
..+... +. ..|+|+|+.++..+.. +.|.+||+.+++. ...+..|.. .+..++|++++.++++.. +
T Consensus 283 ~~~~~~--~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 283 IDNFEG--EY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp ECSSSS--CE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred eCCCCc--EE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 544433 33 3588999987766543 3699999987642 344444433 688899998777777775 4
Q ss_pred eEEEEcCCCCCC
Q 024185 243 VLSFWIPNPSSN 254 (271)
Q Consensus 243 ~v~iw~~~~~~~ 254 (271)
.|.+|++.+++.
T Consensus 360 ~l~~~~~~~g~~ 371 (710)
T 2xdw_A 360 TLQLHDLATGAL 371 (710)
T ss_dssp EEEEEETTTCCE
T ss_pred EEEEEECCCCCE
Confidence 477888866653
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-15 Score=118.99 Aligned_cols=226 Identities=9% Similarity=-0.021 Sum_probs=157.3
Q ss_pred eeEEeeec-ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFARQ-NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
.++.++.. ++.+..++..++.. +..+.. ......++++++++. +++...++.|.+||.++++....+..
T Consensus 54 ~~lyv~~~~~~~v~viD~~t~~~----~~~i~~-~~~p~~i~~~~~g~l-----yv~~~~~~~v~~iD~~t~~~~~~i~~ 123 (328)
T 3dsm_A 54 GIGWIVVNNSHVIFAIDINTFKE----VGRITG-FTSPRYIHFLSDEKA-----YVTQIWDYRIFIINPKTYEITGYIEC 123 (328)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCE----EEEEEC-CSSEEEEEEEETTEE-----EEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEEcCCCEEEEEECcccEE----EEEcCC-CCCCcEEEEeCCCeE-----EEEECCCCeEEEEECCCCeEEEEEEc
Confidence 44444443 57788888776632 222332 345667899899864 44555789999999999988877764
Q ss_pred CC-------cceEEEcCCCCEEEEEe--cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC----
Q 024185 91 RG-------RPTVAFDQQGLVFAVAM--EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---- 157 (271)
Q Consensus 91 ~~-------~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---- 157 (271)
.. ...+++ +++.++++. .++.|.++|..+++. ...+.. ......++++|+|++++++..+
T Consensus 124 g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~----~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~ 196 (328)
T 3dsm_A 124 PDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV----VDELTI-GIQPTSLVMDKYNKMWTITDGGYEGS 196 (328)
T ss_dssp TTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE----EEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTC
T ss_pred CCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE----EEEEEc-CCCccceEEcCCCCEEEEECCCccCC
Confidence 43 334777 455555554 488999999998774 222222 2345678999999976666544
Q ss_pred ------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEE--ecCCcceeEEEE
Q 024185 158 ------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC--WNGNIGVVACLK 229 (271)
Q Consensus 158 ------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~ 229 (271)
+.|.++|..+++....+..... .....++++|++++++++.. .|.+||..+++.... +........+++
T Consensus 197 ~~~~~~~~v~~id~~t~~v~~~~~~~~g-~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~ 273 (328)
T 3dsm_A 197 PYGYEAPSLYRIDAETFTVEKQFKFKLG-DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLT 273 (328)
T ss_dssp SSCBCCCEEEEEETTTTEEEEEEECCTT-CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEE
T ss_pred ccccCCceEEEEECCCCeEEEEEecCCC-CCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEE
Confidence 7899999999998877754322 23778999999999888765 899999988776321 222235678999
Q ss_pred Eec-CCcEEEEe----C--CeEEEEcCCCCCCCcCC
Q 024185 230 WAP-RRAMFVAA----S--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 230 ~s~-~~~~l~~~----~--~~v~iw~~~~~~~~~~~ 258 (271)
++| +++++++. . +.|.+||.+ ++.....
T Consensus 274 vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 274 VNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp ECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred EcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 999 67777776 3 789999998 6655443
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-15 Score=117.69 Aligned_cols=184 Identities=12% Similarity=0.044 Sum_probs=146.5
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCC---cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCC-ccceE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRG---RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVC 140 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~v~ 140 (271)
+++++.++.|++||.++++.+..+..+. ...+.++|+|++++ +.++.|+.||. +++. ...+..+ ...+.
T Consensus 8 lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~----~W~~~~~~~~~~~ 80 (276)
T 3no2_A 8 LVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE----LWNIAAPAGCEMQ 80 (276)
T ss_dssp EEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE----EEEEECCTTCEEE
T ss_pred EEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE----EEEEcCCCCcccc
Confidence 6788999999999999999999998764 56699999999888 44788999999 6665 4555443 34688
Q ss_pred EEEEcCCCcEEEEEec-CCeEEEEECCCCeEEEEeecCCCC----CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeE
Q 024185 141 DIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSP----NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 215 (271)
Q Consensus 141 ~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 215 (271)
++.+.|+|+.+++.+. ++.+..+|. +++.+..+...... .....++..++|+++++...++.|..||.. |+.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 9999999999999887 788888884 78877776543210 124456789999999999999999999987 9999
Q ss_pred EEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCC
Q 024185 216 ACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 216 ~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~ 258 (271)
.++... ..+.++...++|+++++++ +.|..+|.++++.+-+.
T Consensus 159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence 988754 3456778899999888876 57999999988774433
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-15 Score=115.81 Aligned_cols=226 Identities=11% Similarity=0.012 Sum_probs=150.0
Q ss_pred eeEEe-e-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 12 QALLF-A-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 12 ~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
..+.+ + ..++.+..++...... ......+......++++++++. +++.. ++.|..||.+.... ..+.
T Consensus 35 g~l~v~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~~~~g~l-----~v~~~-~~~i~~~d~~~~~~-~~~~ 103 (270)
T 1rwi_B 35 GNVYVTSEGMYGRVVKLATGSTGT----TVLPFNGLYQPQGLAVDGAGTV-----YVTDF-NNRVVTLAAGSNNQ-TVLP 103 (270)
T ss_dssp CCEEEEECSSSCEEEEECC---------EECCCCSCCSCCCEEECTTCCE-----EEEET-TTEEEEECTTCSCC-EECC
T ss_pred CCEEEEccCCCCcEEEecCCCccc----ceEeeCCcCCcceeEECCCCCE-----EEEcC-CCEEEEEeCCCceE-eeee
Confidence 44555 4 3456676666433311 1111223345677999999885 34444 88999999876543 2332
Q ss_pred c---CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 90 L---RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 90 ~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
. .....++++++|+.+++...++.|.+|+..+... ..........+.+++++|+|+.+++...++.|.+||..
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC----EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee----EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence 2 2345699999999777767788999997655442 22222233467889999999866666678899999987
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
............ ..+..++++++|+++++...++.|.+||............+...+.+++++|+|+++++.. +.|
T Consensus 180 ~~~~~~~~~~~~--~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 180 SNNQVVLPFTDI--TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp TCCEEECCCSSC--CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CCceEeecccCC--CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence 765443222221 3478899999998878777788999999876544332223335688999999999777765 889
Q ss_pred EEEcCCCCCC
Q 024185 245 SFWIPNPSSN 254 (271)
Q Consensus 245 ~iw~~~~~~~ 254 (271)
+++++...+.
T Consensus 258 ~~~~~~~~~~ 267 (270)
T 1rwi_B 258 VKLTSLEHHH 267 (270)
T ss_dssp EEECCCGGGS
T ss_pred EEEcCCCccc
Confidence 9999876554
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-15 Score=132.00 Aligned_cols=231 Identities=9% Similarity=-0.036 Sum_probs=156.7
Q ss_pred ecceeEEeeecce-----eeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCce----------
Q 024185 9 PITQALLFARQNI-----ILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALE---------- 73 (271)
Q Consensus 9 ~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~---------- 73 (271)
|..+.++++.+.+ .+..++...+..... .... ..+..++|+|||+. |+.++.++.
T Consensus 134 PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~---~~~~--~~~~~~~wspDg~~-----l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 134 EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD---VLER--VKFSCMAWTHDGKG-----MFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE---EEEE--ECSCCEEECTTSSE-----EEEEECCCCSSCCSSSCCC
T ss_pred CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc---cccC--cccceEEEEeCCCE-----EEEEEECCccccccccccc
Confidence 5556777775432 677777666632211 1111 12566899999998 555555544
Q ss_pred ------EEEEEecCccee--EEEec--CC--cceEEEcCCCCEEEEEec-----CCeEEEEeCCC------CCCCcceEE
Q 024185 74 ------YGIFVLMLASFQ--GILRL--RG--RPTVAFDQQGLVFAVAME-----AGAIKLFDSRS------YDKGPFDTF 130 (271)
Q Consensus 74 ------i~iwd~~~~~~~--~~~~~--~~--~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~------~~~~~~~~~ 130 (271)
|++|++.+++.. ..+.. +. ...+.|+|||++|+.++. +..|++||+.+ +.. ...
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~ 280 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL---KWV 280 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC---CCE
T ss_pred cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc---ceE
Confidence 999999887632 23333 22 345899999999988764 56899999976 421 123
Q ss_pred EecCCccceEEEEEcCCCcEEEEEec----CCeEEEEECCCCeE--EEEeecCCCCCceeeEEECCCCCEEEEecCCC--
Q 024185 131 LVGGDTAEVCDIKFSNDGKSMLLTTT----NNNIYVLDAYGGEK--RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG-- 202 (271)
Q Consensus 131 ~~~~~~~~v~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-- 202 (271)
.+..+...+.. .|+|+|+.|+..+. ++.|.+||+.+++. ...+..+.....+..+.|++++.++++...++
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 33445555554 58899998877765 34699999987642 23444443323477889988888888888887
Q ss_pred cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEe--C----CeEEEEcCCCCC
Q 024185 203 TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA--S----SVLSFWIPNPSS 253 (271)
Q Consensus 203 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~----~~v~iw~~~~~~ 253 (271)
.|.+||+.+++.+..+..+.+.+..++++|++..++.. + +++..||+.+++
T Consensus 360 ~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 46677877788888887778889999999998755533 3 679999998876
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=6.7e-15 Score=118.53 Aligned_cols=179 Identities=11% Similarity=0.094 Sum_probs=120.3
Q ss_pred eEEeeEEecCCchhhhhhhhhhc--cCceEEEEEecCcceeEE-EecCCcceEEEcCCC-CEEEEEecCCeEEEEeC---
Q 024185 47 IRRGLFLSACLQLMIALCLVLLT--TALEYGIFVLMLASFQGI-LRLRGRPTVAFDQQG-LVFAVAMEAGAIKLFDS--- 119 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~--- 119 (271)
....++++|+|++ ++++. .++.|.+||+++++.+.. +.......+.+.|++ ..+++.+.||.+.+|+.
T Consensus 109 ~p~~i~~spdg~~-----l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 109 YDGLFRQTTDGKF-----IVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp CGGGEEECTTSSE-----EEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred CcceEEECCCCCE-----EEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 3456899999998 44443 368999999999988877 554332223334433 23333344444444433
Q ss_pred ---------------------------------------------CCCCCCcceEEEecC--------CccceEEEEEcC
Q 024185 120 ---------------------------------------------RSYDKGPFDTFLVGG--------DTAEVCDIKFSN 146 (271)
Q Consensus 120 ---------------------------------------------~~~~~~~~~~~~~~~--------~~~~v~~~~~s~ 146 (271)
..........+.+.. .......++|+|
T Consensus 184 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~ 263 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR 263 (361)
T ss_dssp SSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred CcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence 322210000010000 001111278999
Q ss_pred CCcEEEEEec-----------CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc--e
Q 024185 147 DGKSMLLTTT-----------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR--N 213 (271)
Q Consensus 147 ~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~ 213 (271)
+++.++++.. .+.|.+||+.+++.+.++..+. ..+++|+|||++|++++. +.|.+||..++ +
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~ 338 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPK 338 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCE
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcce
Confidence 9888877653 3589999999999999887665 667999999999998887 99999999999 9
Q ss_pred eEEEecCCcceeEEEEEecCCc
Q 024185 214 EVACWNGNIGVVACLKWAPRRA 235 (271)
Q Consensus 214 ~~~~~~~~~~~v~~~~~s~~~~ 235 (271)
.+..+..+......++++|+|+
T Consensus 339 ~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 339 LLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEETTSCSSEEEEEECCCSC
T ss_pred eeEEeccCCCCcEEEEecCCCC
Confidence 9999866777778999999986
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-15 Score=119.50 Aligned_cols=200 Identities=12% Similarity=0.096 Sum_probs=139.4
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
+..+.....+++|+|+++.+ ++++..++.|..||.+++ ...+..+ .+..++++|+|+++++...++.|.+||
T Consensus 23 l~~~~~~~eg~~~d~~g~~l----~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAV----IFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEE----EEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred EecCCccccCCeEeCCCCEE----EEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 33444556789999999832 557788999999999877 4455443 355699999999877776678999999
Q ss_pred CCCCCCCcceEEEecCC-ccceEEEEEcCCCcEEEEE----e-------------cCCeEEEEECCCCeEEEEeecCCCC
Q 024185 119 SRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLT----T-------------TNNNIYVLDAYGGEKRCGFSLEPSP 180 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~----~-------------~d~~i~~~d~~~~~~~~~~~~~~~~ 180 (271)
..+++...+.. ...+. ...+..++++|+|+++++. + ..+.|..++.. ++. ..+....
T Consensus 97 ~~~g~~~~~~~-~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~-- 171 (296)
T 3e5z_A 97 EPGGEWESIAD-SFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDR-- 171 (296)
T ss_dssp STTCCEEEEEC-EETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCC--
T ss_pred CCCCcEEEEee-ccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCC--
Confidence 97776311100 01111 1346789999999987763 2 13467777655 443 3333232
Q ss_pred CceeeEEECCCCCEEEEecCCCcEEEEEcC-Ccee---EEEecCCcceeEEEEEecCCcEEEEeCCeEEEEcCCC
Q 024185 181 NTNTEATFTPDGQYVVSGSGDGTLHAWNIN-TRNE---VACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNP 251 (271)
Q Consensus 181 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~v~iw~~~~ 251 (271)
.....++|+|+++.+++.+.++.|.+||+. +++. ...+..+...+.+++++++|+++++.++.|.+|+.+.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~~g 246 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASAGDGVHVLTPDG 246 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEETTEEEEECTTS
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEcCCeEEEECCCC
Confidence 236789999999988777778999999997 4544 2333334556778999999998877778899999874
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.5e-15 Score=114.07 Aligned_cols=211 Identities=10% Similarity=0.020 Sum_probs=160.5
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEccccc-ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSK-GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
+.++.+..++.+..++..++ ..+..+..+. ..+.++.++|+|+. ++ +.++.|+.||. +++.+..+..
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG----~~~w~~~~~~~~~~~~~~~~pdG~i-----lv--s~~~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTK----EIVWEYPLEKGWECNSVAATKAGEI-----LF--SYSKGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp EEEEECTTCSEEEEEETTTT----EEEEEEECCTTCCCCEEEECTTSCE-----EE--ECBSEEEEECT-TSCEEEEEEC
T ss_pred cEEEeeCCCCEEEEEECCCC----eEEEEeCCCccCCCcCeEECCCCCE-----EE--eCCCCEEEECC-CCCEEEEEcC
Confidence 34444566889999988777 4444455554 46778999999997 55 45788999999 8998888876
Q ss_pred C---CcceEEEcCCCCEEEEEec-CCeEEEEeCCCCCCCcceEEEec----CCccceEEEEEcCCCcEEEEEecCCeEEE
Q 024185 91 R---GRPTVAFDQQGLVFAVAME-AGAIKLFDSRSYDKGPFDTFLVG----GDTAEVCDIKFSNDGKSMLLTTTNNNIYV 162 (271)
Q Consensus 91 ~---~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 162 (271)
+ .+..+.+.++|+.+++.+. ++.+..+|. +++. +..+.+. ++......++..++|+++++...++.|..
T Consensus 74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~--l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~ 150 (276)
T 3no2_A 74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEV--LSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVRE 150 (276)
T ss_dssp CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCE--EEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEE
T ss_pred CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCE--EEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEE
Confidence 4 3445889999999999887 778888886 4443 2233322 22234556678999999999999999999
Q ss_pred EECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc------ceeEEEEEecCCcE
Q 024185 163 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI------GVVACLKWAPRRAM 236 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~s~~~~~ 236 (271)
||.. |+.+.++..... ..++...++|+.+++++.++.|..+|..+++.+.++..+. ..+..+...++|++
T Consensus 151 ~d~~-G~~~w~~~~~~~---~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i 226 (276)
T 3no2_A 151 IAPN-GQLLNSVKLSGT---PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL 226 (276)
T ss_dssp ECTT-SCEEEEEECSSC---CCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred ECCC-CCEEEEEECCCC---ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence 9987 999988876533 4567888999999999988899999999999999885432 23788889999998
Q ss_pred EEEeC
Q 024185 237 FVAAS 241 (271)
Q Consensus 237 l~~~~ 241 (271)
+++..
T Consensus 227 ~v~~~ 231 (276)
T 3no2_A 227 YICNW 231 (276)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88873
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.71 E-value=9e-15 Score=116.29 Aligned_cols=219 Identities=8% Similarity=-0.026 Sum_probs=153.0
Q ss_pred ceeeEEEEeeccceeeEEEEEcc-----cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-Cc
Q 024185 20 NIILILLESLCGIYQCMIIEFFA-----TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-GR 93 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~ 93 (271)
++.+..++..++..... .+. ........+.+.. ++. +++...++.|.+||.++++.+.++... ..
T Consensus 16 ~~~l~~~d~~t~~~~~~---i~~~~n~~~lg~~~~~i~~~~-~~l-----yv~~~~~~~v~viD~~t~~~~~~i~~~~~p 86 (328)
T 3dsm_A 16 NATLSYYDPATCEVENE---VFYRANGFKLGDVAQSMVIRD-GIG-----WIVVNNSHVIFAIDINTFKEVGRITGFTSP 86 (328)
T ss_dssp CBEEEEEETTTTEEECS---HHHHHHSSCCBSCEEEEEEET-TEE-----EEEEGGGTEEEEEETTTCCEEEEEECCSSE
T ss_pred CceEEEEECCCCEEhhh---hHhhhcCcccCccceEEEEEC-CEE-----EEEEcCCCEEEEEECcccEEEEEcCCCCCC
Confidence 67888888776632211 011 1112345566643 343 445567899999999999998888644 34
Q ss_pred ceEEEcCCCCEEEEEe-cCCeEEEEeCCCCCCCcceEEEecC---CccceEEEEEcCCCcEEEEEe--cCCeEEEEECCC
Q 024185 94 PTVAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLVGG---DTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYG 167 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~ 167 (271)
..++++++++ ++++. .++.|.+||..+++. ........ +......+++ . +..++++. .++.|.++|..+
T Consensus 87 ~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~--~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t 161 (328)
T 3dsm_A 87 RYIHFLSDEK-AYVTQIWDYRIFIINPKTYEI--TGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTET 161 (328)
T ss_dssp EEEEEEETTE-EEEEEBSCSEEEEEETTTTEE--EEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTT
T ss_pred cEEEEeCCCe-EEEEECCCCeEEEEECCCCeE--EEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCC
Confidence 5599988885 55554 789999999998764 22222221 0114556677 3 44555554 488999999999
Q ss_pred CeEEEEeecCCCCCceeeEEECCCCCEEEEecCC----------CcEEEEEcCCceeEEEecCC-cceeEEEEEecCCcE
Q 024185 168 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD----------GTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAM 236 (271)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~ 236 (271)
++.+..+..... ...+.++|+|++++++..+ +.|.++|..+++....+... ......++|+|+++.
T Consensus 162 ~~~~~~i~~g~~---p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~ 238 (328)
T 3dsm_A 162 DKVVDELTIGIQ---PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDT 238 (328)
T ss_dssp TEEEEEEECSSC---BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCE
T ss_pred CeEEEEEEcCCC---ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCE
Confidence 998888765443 4568999999977776654 78999999999887776532 235789999999998
Q ss_pred EEEeCCeEEEEcCCCCCCC
Q 024185 237 FVAASSVLSFWIPNPSSNS 255 (271)
Q Consensus 237 l~~~~~~v~iw~~~~~~~~ 255 (271)
|..+.+.|.+||..+++..
T Consensus 239 lyv~~~~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 239 LYWINNDIWRMPVEADRVP 257 (328)
T ss_dssp EEEESSSEEEEETTCSSCC
T ss_pred EEEEccEEEEEECCCCcee
Confidence 8888779999999988764
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.3e-15 Score=129.74 Aligned_cols=202 Identities=7% Similarity=-0.052 Sum_probs=135.2
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCc--ceEEEcCCCCEEEEEecCCe-------
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGR--PTVAFDQQGLVFAVAMEAGA------- 113 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~~------- 113 (271)
+|...+..+.|||||+.+++..--+|+.+..|++||+++++.+........ ..++|+|||+.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 344578889999999984321111566678999999999886511112222 56999999999999987765
Q ss_pred ------EEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC----eEEEEECCCCeEEEEeecCCCCCce
Q 024185 114 ------IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN----NIYVLDAYGGEKRCGFSLEPSPNTN 183 (271)
Q Consensus 114 ------i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~~~v 183 (271)
|++|++.+++...........+...+..+.|+|||++|++++.++ .|++||..+++. ..+..+... .
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~--~ 274 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGA--K 274 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSC--C
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCc--e
Confidence 999999887632122333444556788999999999998887665 778887665543 334434332 4
Q ss_pred eeEEECCCCCEEEEec---CCCcEEEEEcCCcee---EEEecCC-cceeEEEEEecCCcEEEEeC--CeEEEEcC
Q 024185 184 TEATFTPDGQYVVSGS---GDGTLHAWNINTRNE---VACWNGN-IGVVACLKWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 184 ~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~~-~~~v~~~~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
....+ ++|.+++.+. .++.|.+||+.+++. ...+..+ ...+..++|+ ++.++++.. +..++|.+
T Consensus 275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 45556 6666444443 257899999987653 3333333 4568888998 667777765 66555544
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-15 Score=120.16 Aligned_cols=183 Identities=9% Similarity=0.063 Sum_probs=124.5
Q ss_pred ceEEeeEEecCCchhhhhhhhhhcc-----CceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecC---------
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTT-----ALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEA--------- 111 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------- 111 (271)
..+..+.|||+|+. ++..+. ...|.+||+.+++.......+.+..++|+|||+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~-----la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 59 ENATMPRISPDGKK-----IAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp ESCEEEEECTTSSE-----EEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC------
T ss_pred ccCCCeEECCCCCE-----EEEEEeccCCCcceEEEEECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEE
Confidence 45667899999998 333333 23477888888876665554446669999999999888642
Q ss_pred ------------------CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC---------eEEEEE
Q 024185 112 ------------------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN---------NIYVLD 164 (271)
Q Consensus 112 ------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---------~i~~~d 164 (271)
..|++||+.+++. ...+.. . .+..+.|+||| .+++++.++ .|.++|
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~----~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d 206 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEV----IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE 206 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTEE----EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred EcccceeecCcccccCccceEEEEECCCCeE----EeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC
Confidence 5789999987652 122322 3 78899999999 777775542 455555
Q ss_pred CCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC--------CcEEEEEcCCceeEEEecCCcceeEE-EEEecCCc
Q 024185 165 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD--------GTLHAWNINTRNEVACWNGNIGVVAC-LKWAPRRA 235 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~ 235 (271)
+++.. .+..+ . .+..+ +|||++++.++.+ ..|.+|| +++.......+...+.. +.|+ |+
T Consensus 207 --~~~~~-~l~~~-~--~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg- 274 (347)
T 2gop_A 207 --DGKEE-KMFEK-V--SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK- 274 (347)
T ss_dssp --TTEEE-EEEEE-E--SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-
T ss_pred --CCceE-EeccC-c--ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-
Confidence 55543 33333 2 24433 9999988877643 3688888 56655555666777886 9999 88
Q ss_pred EEEEeC--CeEEEEcCCCCC
Q 024185 236 MFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 236 ~l~~~~--~~v~iw~~~~~~ 253 (271)
++++++ +.+++| +.+++
T Consensus 275 ~~~~~~~~~~~~l~-~~~g~ 293 (347)
T 2gop_A 275 VYFTLFEEGSVNLY-IWDGE 293 (347)
T ss_dssp EEEEEEETTEEEEE-EESSS
T ss_pred EEEEEecCCcEEEE-EcCCc
Confidence 777766 789999 87443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-15 Score=121.40 Aligned_cols=172 Identities=13% Similarity=0.064 Sum_probs=133.0
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-----------eeEEEecCCcceEEEcCCCCEEEEEecCCeE
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-----------FQGILRLRGRPTVAFDQQGLVFAVAMEAGAI 114 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 114 (271)
..++.+++++.... +++|+.++ +++|+++..+ .........+..++| |+++|+++ .++.|
T Consensus 38 ~~~nlLais~~~gl-----l~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~V~~l~f--d~~~L~v~-~~~~l 108 (388)
T 1xip_A 38 ASLQNLDISNSKSL-----FVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCF--HGDQVLVS-TRNAL 108 (388)
T ss_dssp SCCBCEEEETTTTE-----EEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEE--ETTEEEEE-ESSEE
T ss_pred ccccEEEEcCCCCE-----EEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCCeeEEEE--CCCEEEEE-cCCcE
Confidence 36888999999998 77788775 5569876433 122333334777999 99999999 78999
Q ss_pred EEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCE
Q 024185 115 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 194 (271)
++||+.+... ......|...+.++.+.+.. +++++.||.+.+||+.+++... + .. .|++++|||+|
T Consensus 109 ~v~dv~sl~~----~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-~---~~--~Vs~v~WSpkG-- 174 (388)
T 1xip_A 109 YSLDLEELSE----FRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-L---AQ--NVTSFDVTNSQ-- 174 (388)
T ss_dssp EEEESSSTTC----EEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-E---EE--SEEEEEECSSE--
T ss_pred EEEEchhhhc----cCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-c---cC--CceEEEEcCCc--
Confidence 9999987664 33444566778888887653 8889999999999999887643 2 12 39999999999
Q ss_pred EEEecCCCcEEEEEcCCcee--EEEe------c---CCcceeEEEEEecCCcEEEEe
Q 024185 195 VVSGSGDGTLHAWNINTRNE--VACW------N---GNIGVVACLKWAPRRAMFVAA 240 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~~~ 240 (271)
++.|..||.+++|+...++. ..++ . +|...|.++.|.+++.++++=
T Consensus 175 ~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 175 LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 67889999999999887775 5556 2 367889999999999988864
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-13 Score=109.90 Aligned_cols=200 Identities=11% Similarity=0.044 Sum_probs=138.8
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec--CCcceEEEcCCCCEEEEEecC----CeE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL--RGRPTVAFDQQGLVFAVAMEA----GAI 114 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d----~~i 114 (271)
+..+.....+++|+|+++. ++++..++.|.+||.++++....... ..+..++++|+++++++...+ +.|
T Consensus 40 ~~~~~~~~~~~~~~~~g~l-----~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i 114 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQL-----FLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGI 114 (333)
T ss_dssp EESSCCCEEEEEECTTSCE-----EEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred EeccCccccCcEECCCCCE-----EEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence 4455556688999999986 56777889999999988876554432 345669999999977777665 689
Q ss_pred EEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec------CCeEEEEECCCCeEEEEeecCCCCCceeeEEE
Q 024185 115 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~ 188 (271)
.+||..+++. ........+...+.+++++|+|+.+++... .+.|..+|..+++...... ... .+..++|
T Consensus 115 ~~~d~~~~~~--~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~--~~~~i~~ 189 (333)
T 2dg1_A 115 FAATENGDNL--QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NIS--VANGIAL 189 (333)
T ss_dssp EEECTTSCSC--EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EES--SEEEEEE
T ss_pred EEEeCCCCEE--EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-CCC--cccceEE
Confidence 9999987764 111111123457899999999987776553 3567777766555433222 211 2678999
Q ss_pred CCCCCEEE-EecCCCcEEEEEcCC-ceeEE--------EecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 189 TPDGQYVV-SGSGDGTLHAWNINT-RNEVA--------CWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 189 ~~~~~~l~-~~~~dg~i~iwd~~~-~~~~~--------~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
+|++++++ +.+.++.|.+||+.+ ++.+. .+.++ ..+..++++++|+++++.. +.|.+||.+.
T Consensus 190 ~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g 263 (333)
T 2dg1_A 190 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG 263 (333)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCC
Confidence 99998665 445578999999964 33322 12222 3578899999999877763 7899999853
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-14 Score=115.65 Aligned_cols=193 Identities=15% Similarity=0.106 Sum_probs=136.0
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYD 123 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 123 (271)
..+.++.|++++.. ++..+.++.++.| .++....+..+ ....++|++++++++++..++.|.+||..+++
T Consensus 6 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-----AVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp CCCCBCCSCGGGGC-----SSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred cccceeeecCCccc-----eeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc
Confidence 34667888988877 5566788899999 34445555444 34569999999977788888999999998776
Q ss_pred CCcceEEEecCCccceEEEEEcCCCcEEEEEecC----CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec
Q 024185 124 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 199 (271)
Q Consensus 124 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 199 (271)
. ......+...+.+++++|+|+++++...+ +.|.+||..+++....+........+..+.++|+|+++++..
T Consensus 78 ~----~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 153 (333)
T 2dg1_A 78 I----KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDF 153 (333)
T ss_dssp E----EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEEC
T ss_pred E----EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEec
Confidence 3 22222455789999999999877776666 689999988776543333222223588899999999887765
Q ss_pred C------CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEe-C--CeEEEEcCCC
Q 024185 200 G------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA-S--SVLSFWIPNP 251 (271)
Q Consensus 200 ~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~--~~v~iw~~~~ 251 (271)
. .+.|..+|..+++... +..+...+..++|+|+|+.|+.+ + +.|.+||+++
T Consensus 154 ~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 154 RGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp CCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 4 3567777765544433 22233457889999999855444 3 7899999864
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-14 Score=114.09 Aligned_cols=179 Identities=8% Similarity=0.013 Sum_probs=117.5
Q ss_pred EEeeEEecCCchhhhhhhhhhcc---------------------------CceEEEEEecCcceeEEEecCCcceEEEcC
Q 024185 48 RRGLFLSACLQLMIALCLVLLTT---------------------------ALEYGIFVLMLASFQGILRLRGRPTVAFDQ 100 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~---------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 100 (271)
+..+.|+|+++.+ +.++. ...|++||+.+++.+..+....+..++|+|
T Consensus 106 ~~~~~wspdg~~l-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~sp 180 (347)
T 2gop_A 106 IRSLEWNEDSRKL-----LIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHR 180 (347)
T ss_dssp EEEEEECTTSSEE-----EEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEET
T ss_pred ccceeECCCCCEE-----EEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCC
Confidence 8889999999983 33332 367999999888763444322556699999
Q ss_pred CCCEEEEEecCC-------eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC--------CeEEEEEC
Q 024185 101 QGLVFAVAMEAG-------AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN--------NNIYVLDA 165 (271)
Q Consensus 101 ~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------~~i~~~d~ 165 (271)
|| +++++..++ ...+|.+.+++ ...+..+ ..+..+ +|||++|+.++.+ ..|.+||
T Consensus 181 dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-----~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d- 250 (347)
T 2gop_A 181 DK-IVVNVPHREIIPQYFKFWDIYIWEDGK-----EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD- 250 (347)
T ss_dssp TE-EEEEEECCCSSCCSSCCEEEEEEETTE-----EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-
T ss_pred Ce-EEEEEecccccccccccccEEEeCCCc-----eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC-
Confidence 99 777775432 33444333333 2222223 445444 9999999887754 4788888
Q ss_pred CCCeEEEEeecCCCCCceee-EEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--C
Q 024185 166 YGGEKRCGFSLEPSPNTNTE-ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--S 242 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~ 242 (271)
+++.......+. ..+.. +.|+ |+ ++++++.++.+++| +.+++..... .+...|.+++|+| .++++++ +
T Consensus 251 -~~~~~~l~~~~~--~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--~~~~~~~~~~ 321 (347)
T 2gop_A 251 -GKEVMGILDEVD--RGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--IVVYLKETAT 321 (347)
T ss_dssp -SSCEEESSTTCC--SEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS--SEEEEEECSS
T ss_pred -CCceEeccccCC--cccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC--cEEEEEcCCC
Confidence 555433333322 34765 8999 88 88899999999999 8766654444 4577899999999 5555554 3
Q ss_pred e-EEEEcCC
Q 024185 243 V-LSFWIPN 250 (271)
Q Consensus 243 ~-v~iw~~~ 250 (271)
. ..+|.++
T Consensus 322 ~~~~l~~~~ 330 (347)
T 2gop_A 322 RLRELFTWD 330 (347)
T ss_dssp SCCEEEEES
T ss_pred ChHHheEeC
Confidence 3 2566655
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-13 Score=113.48 Aligned_cols=219 Identities=11% Similarity=0.082 Sum_probs=152.3
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec--CcceeEEEecCCc-c
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM--LASFQGILRLRGR-P 94 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~-~ 94 (271)
..++.+..++..++ ..+..+... .....+.++|+|++ +.+++.|+.|.+||+. +++.+..+..... .
T Consensus 174 ~~~~~V~viD~~t~----~v~~~i~~g-~~p~~v~~SpDGr~-----lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~ 243 (567)
T 1qks_A 174 RDAGQIALIDGSTY----EIKTVLDTG-YAVHISRLSASGRY-----LFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 243 (567)
T ss_dssp TTTTEEEEEETTTC----CEEEEEECS-SCEEEEEECTTSCE-----EEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred CCCCeEEEEECCCC----eEEEEEeCC-CCccceEECCCCCE-----EEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc
Confidence 34678888887766 222333332 24557999999998 5567789999999995 7888888876543 4
Q ss_pred eEEEc----CCCCEEEEEec-CCeEEEEeCCCCCCCcceEEEecC--------C-ccceEEEEEcCCCcEEEEE-ecCCe
Q 024185 95 TVAFD----QQGLVFAVAME-AGAIKLFDSRSYDKGPFDTFLVGG--------D-TAEVCDIKFSNDGKSMLLT-TTNNN 159 (271)
Q Consensus 95 ~~~~~----~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~--------~-~~~v~~~~~s~~~~~l~~~-~~d~~ 159 (271)
.++|+ |||++++++.. ++++.++|..+.+. +......+ | ...+..+..++++..++.. ..+|.
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~--~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP--KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE--EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE--EEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 49999 69998888754 58999999888664 33333221 1 1267889999986655544 45799
Q ss_pred EEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec-CCCcEEEEEcCCceeEEEecC-----CcceeEEEE-Eec
Q 024185 160 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRNEVACWNG-----NIGVVACLK-WAP 232 (271)
Q Consensus 160 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~-~s~ 232 (271)
|.++|..+.+.+........ .....+.|+|+|+++++++ .++.|.++|+.+++.+..+.. |.+ .... ++|
T Consensus 322 v~~vd~~~~~~~~v~~i~~~-~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg--~g~~~~~p 398 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG--RGANFVHP 398 (567)
T ss_dssp EEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT--TCEEEEET
T ss_pred EEEEecCCCccceeeeeecc-ccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc--cceeeECC
Confidence 99999887654333222211 2366789999999887665 478999999999998776654 322 1223 588
Q ss_pred C-CcEEEEeC---CeEEEEcCCC
Q 024185 233 R-RAMFVAAS---SVLSFWIPNP 251 (271)
Q Consensus 233 ~-~~~l~~~~---~~v~iw~~~~ 251 (271)
+ +..++++. ++|.++|..+
T Consensus 399 ~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 399 TFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCcEEEeCCCCCCeEEEecCCC
Confidence 7 45555552 7899999987
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-13 Score=106.92 Aligned_cols=221 Identities=13% Similarity=0.121 Sum_probs=143.8
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecC-CchhhhhhhhhhccCceEEEEEecCcceeEE-Eec-----
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSAC-LQLMIALCLVLLTTALEYGIFVLMLASFQGI-LRL----- 90 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~----- 90 (271)
..++.+..++...+...........++...+..++++++ ++. +++ +..+.|.+||.+ ++.... ...
T Consensus 43 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l-----~v~-~~~~~l~~~d~~-g~~~~~~~~~~~~~~ 115 (314)
T 1pjx_A 43 KPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQL-----FVA-DMRLGLLVVQTD-GTFEEIAKKDSEGRR 115 (314)
T ss_dssp EECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEE-----EEE-ETTTEEEEEETT-SCEEECCSBCTTSCB
T ss_pred CCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcE-----EEE-ECCCCEEEEeCC-CCEEEEEeccCCCcc
Confidence 456677777654442211100000124456788999999 775 223 334478899987 665433 221
Q ss_pred -CCcceEEEcCCCCEEEEEecC---------------CeEEEEeCCCCCCCcceEEEecCCccceEEEEEc----CCCcE
Q 024185 91 -RGRPTVAFDQQGLVFAVAMEA---------------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS----NDGKS 150 (271)
Q Consensus 91 -~~~~~~~~~~~~~~l~~~~~d---------------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~ 150 (271)
..+..++++++|+++++...+ +.|..||.. ++. ..+..+......++|+ |+++.
T Consensus 116 ~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-----~~~~~~~~~~~~i~~~~~~d~dg~~ 189 (314)
T 1pjx_A 116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-----IQVDTAFQFPNGIAVRHMNDGRPYQ 189 (314)
T ss_dssp CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-----EEEEEEESSEEEEEEEECTTSCEEE
T ss_pred ccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE-----EEeccCCCCcceEEEecccCCCCCE
Confidence 124569999999877766554 567777765 332 1112233456889999 99977
Q ss_pred EEEE-ecCCeEEEEECC-CCeEE--EEeec-CCCC-CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcce
Q 024185 151 MLLT-TTNNNIYVLDAY-GGEKR--CGFSL-EPSP-NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV 224 (271)
Q Consensus 151 l~~~-~~d~~i~~~d~~-~~~~~--~~~~~-~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 224 (271)
++.+ ..++.|.+||.. +++.. ..+.. .... .....++++++|+++++...++.|.+||..+++.+..+..+...
T Consensus 190 l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~ 269 (314)
T 1pjx_A 190 LIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEK 269 (314)
T ss_dssp EEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSC
T ss_pred EEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCC
Confidence 6655 457899999976 45421 11111 1111 33678999999998888777889999999878877777666677
Q ss_pred eEEEEEecCCcEEEEe-C--CeEEEEcCCC
Q 024185 225 VACLKWAPRRAMFVAA-S--SVLSFWIPNP 251 (271)
Q Consensus 225 v~~~~~s~~~~~l~~~-~--~~v~iw~~~~ 251 (271)
+.+++|+|+++.|..+ . +.|..|++..
T Consensus 270 ~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 270 PSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8999999999955444 4 5899999865
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-13 Score=106.41 Aligned_cols=196 Identities=11% Similarity=0.041 Sum_probs=134.5
Q ss_pred eEEeeEEecCCchhhhhhhh-hhccCceEEEEEecCcceeEEEec--CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q 024185 47 IRRGLFLSACLQLMIALCLV-LLTTALEYGIFVLMLASFQGILRL--RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYD 123 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 123 (271)
....++++++++. ++ +...++.|..||..++........ .....++++++++.+++.. ++.|.+||.....
T Consensus 25 ~p~~i~~~~~g~l-----~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNV-----YVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCE-----EEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCE-----EEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce
Confidence 5567889999986 55 546788999998765543222111 2345699999998555555 8899999987655
Q ss_pred CCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCc
Q 024185 124 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 203 (271)
Q Consensus 124 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 203 (271)
. ..........+..++++|+|+.+++...++.|.+|+..+........ .....+..++++|+|+++++...++.
T Consensus 99 ~----~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~--~~~~~p~~i~~~~~g~l~v~~~~~~~ 172 (270)
T 1rwi_B 99 Q----TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF--TGLNDPDGVAVDNSGNVYVTDTDNNR 172 (270)
T ss_dssp C----EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC--CSCCSCCCEEECTTCCEEEEEGGGTE
T ss_pred E----eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc--ccCCCceeEEEeCCCCEEEEECCCCE
Confidence 3 21111223568899999999877776778899999865544332211 11123677999999997777777889
Q ss_pred EEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 204 LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 204 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
|.+||............+...+.+++++++|+++++.. +.|.+|+..+...
T Consensus 173 i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred EEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence 99999877665443333335678999999998777764 6799999877544
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-13 Score=116.54 Aligned_cols=187 Identities=11% Similarity=-0.010 Sum_probs=141.4
Q ss_pred hhhhccCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCC--CCCCCcceEEEecCCccceEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSR--SYDKGPFDTFLVGGDTAEVCD 141 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~ 141 (271)
+++...++.|.++|..+++.+..+... ....+.++|||+++++++.++.|.+||+. +.+. ...+... .....
T Consensus 170 ~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~----v~~i~~G-~~P~~ 244 (567)
T 1qks_A 170 SVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT----VAEIKIG-SEARS 244 (567)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE----EEEEECC-SEEEE
T ss_pred EEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE----eEEEecC-CCCce
Confidence 567788999999999999999888765 34569999999999999999999999996 5443 3333322 34678
Q ss_pred EEEc----CCCcEEEEEec-CCeEEEEECCCCeEEEEeecCCC---------CCceeeEEECCCCCE-EEEecCCCcEEE
Q 024185 142 IKFS----NDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPS---------PNTNTEATFTPDGQY-VVSGSGDGTLHA 206 (271)
Q Consensus 142 ~~~s----~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~-l~~~~~dg~i~i 206 (271)
++|+ |||+++++++. ++++.++|..+.+.+..+..... ...+..+..++++.. ++....+|.|.+
T Consensus 245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~ 324 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 324 (567)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence 9999 69999988776 69999999999998887653210 113667888888654 455566799999
Q ss_pred EEcCCceeE--EEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCCCcC
Q 024185 207 WNINTRNEV--ACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 207 wd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~~~~ 257 (271)
+|..+.+.+ ..+. .......+.|+|+|+++++++ +.|.++|+.++++...
T Consensus 325 vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~ 379 (567)
T 1qks_A 325 VDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI 379 (567)
T ss_dssp EETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEE
Confidence 998875432 2332 223456889999999887765 8899999999876543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-12 Score=105.82 Aligned_cols=222 Identities=9% Similarity=-0.056 Sum_probs=138.5
Q ss_pred eeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhh---------ccCceEEEEEecCcceeEEEecC-
Q 024185 22 ILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLL---------TTALEYGIFVLMLASFQGILRLR- 91 (271)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~- 91 (271)
.+..++...+ ..+..+...... .+.++|+++.+++ +. ..++.|.+||..+.+.+..+...
T Consensus 48 ~v~v~D~~t~----~~~~~i~~g~~p--~i~~spDg~~lyv----~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~ 117 (373)
T 2mad_H 48 QQWVLDAGSG----SILGHVNGGFLP--NPVAAHSGSEFAL----ASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD 117 (373)
T ss_pred EEEEEECCCC----eEEEEecCCCCC--CeEECCCCCEEEE----EeccccccccCCCCCeEEEEECCCCcEEEEEECCC
Confidence 5667776655 223334433333 7999999998533 22 24678999999998888777543
Q ss_pred --------CcceEEEcCCCCEEEEEec--CCeEEEEeCCCCCCCcceE-EEecCC-----cc------------------
Q 024185 92 --------GRPTVAFDQQGLVFAVAME--AGAIKLFDSRSYDKGPFDT-FLVGGD-----TA------------------ 137 (271)
Q Consensus 92 --------~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~-~~~~~~-----~~------------------ 137 (271)
....++|+|||++|+++.. ++.|.++| .+++. ... ....+. .+
T Consensus 118 ~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 118 APRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS--DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH 194 (373)
T ss_pred ccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE--EeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC
Confidence 2234899999999999874 47899999 88764 222 111110 00
Q ss_pred --ce-----------------EEEEEcCCCcEEEEEecCCeEEEEECCCCe--EEEEeecCC--------CCCceeeEEE
Q 024185 138 --EV-----------------CDIKFSNDGKSMLLTTTNNNIYVLDAYGGE--KRCGFSLEP--------SPNTNTEATF 188 (271)
Q Consensus 138 --~v-----------------~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~--------~~~~v~~~~~ 188 (271)
.+ ....+.+++..++..+..+.+.+.|+.++. .+..+.... .+.....+.+
T Consensus 195 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~ 274 (373)
T 2mad_H 195 AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEE
Confidence 00 001122222222222334455555654332 112221110 0112333788
Q ss_pred CCCCCEEEEecC----------CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCc-EEEEeC---CeEEEEcCCCCCC
Q 024185 189 TPDGQYVVSGSG----------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS---SVLSFWIPNPSSN 254 (271)
Q Consensus 189 ~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~---~~v~iw~~~~~~~ 254 (271)
+||++.++.+.. ++.|.++|+.+++.+.++... ....+++|+|||+ +++++. ++|.+||+.+++.
T Consensus 275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 999998877643 357999999999999988643 3578999999999 677664 7899999999988
Q ss_pred CcC
Q 024185 255 STD 257 (271)
Q Consensus 255 ~~~ 257 (271)
...
T Consensus 354 v~~ 356 (373)
T 2mad_H 354 DQS 356 (373)
T ss_pred Eee
Confidence 766
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-14 Score=124.60 Aligned_cols=227 Identities=10% Similarity=-0.020 Sum_probs=146.0
Q ss_pred ecceeEEeeec-c----eeeEEEEeeccceeeEEEEEcccccceE--EeeEEecCCchhhhhhhhhhccCce--------
Q 024185 9 PITQALLFARQ-N----IILILLESLCGIYQCMIIEFFATSKGIR--RGLFLSACLQLMIALCLVLLTTALE-------- 73 (271)
Q Consensus 9 ~~~~~l~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~~~~~~l~s~~~dg~-------- 73 (271)
|..+.+++... + ..+..++...+.... ..+...+ ..++|+|+|+. |+.++.|..
T Consensus 130 PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------~~~~~~~~~~~~~wspDg~~-----l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 130 WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------VDVIEGGKYATPKWTPDSKG-----FYYEWLPTDPSIKVDER 198 (695)
T ss_dssp TTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------SCCBSCCTTCCCEECTTSSE-----EEEEECCCCTTSCGGGG
T ss_pred CCCCEEEEEECCCCCceEEEEEEECCCCCCcC------CcccCcccccceEEecCCCE-----EEEEEecCCCCCccccC
Confidence 55566666643 1 356667665552210 1111122 57899999998 556666554
Q ss_pred -----EEEEEecCcce--eEEEec--C--CcceEEEcCCCCEEEEEecCC----eEEEEeCCCCCCCcceEEEecCCccc
Q 024185 74 -----YGIFVLMLASF--QGILRL--R--GRPTVAFDQQGLVFAVAMEAG----AIKLFDSRSYDKGPFDTFLVGGDTAE 138 (271)
Q Consensus 74 -----i~iwd~~~~~~--~~~~~~--~--~~~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~ 138 (271)
|++|++.+++. ...+.. + ....+.|+|||++|++++.++ .|++++..+++. ..+..+...
T Consensus 199 ~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-----~~l~~~~~~ 273 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-----RLLVKGVGA 273 (695)
T ss_dssp GGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-----EEEEECSSC
T ss_pred CCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-----EEeecCCCc
Confidence 99999988763 233332 2 234589999999988877665 677776655442 222334455
Q ss_pred eEEEEEcCCCcEEEEEec----CCeEEEEECCCCeE--EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC-C
Q 024185 139 VCDIKFSNDGKSMLLTTT----NNNIYVLDAYGGEK--RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN-T 211 (271)
Q Consensus 139 v~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~ 211 (271)
+....+ ++|. ++..+. ++.|.+||+.+++. ...+..+.....+..++|+ ++.++++...|+..++|.+. +
T Consensus 274 ~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~ 350 (695)
T 2bkl_A 274 KYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK 350 (695)
T ss_dssp CEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence 566666 6666 554443 58899999987653 2333333322347778887 67788888889888877654 4
Q ss_pred ceeEEEecCC-cceeEEEEEecCCcEEEEe--C----CeEEEEcCCCCCC
Q 024185 212 RNEVACWNGN-IGVVACLKWAPRRAMFVAA--S----SVLSFWIPNPSSN 254 (271)
Q Consensus 212 ~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~--~----~~v~iw~~~~~~~ 254 (271)
++....+..+ .+.+..++++|++..++.. + +++++||+.+++.
T Consensus 351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 6666666554 6678889999998766532 2 6799999988764
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-12 Score=98.51 Aligned_cols=224 Identities=9% Similarity=0.011 Sum_probs=147.9
Q ss_pred eeEEeeec-ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE-e
Q 024185 12 QALLFARQ-NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL-R 89 (271)
Q Consensus 12 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~ 89 (271)
..+.++.. ++.+..++.. +.. ... ........+..+++.+++.. +++...++.|..||. +++..... .
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~~--~~~-~~~~~~~~~~~i~~~~~g~l-----~v~~~~~~~i~~~d~-~g~~~~~~~~ 137 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GII--KEY-TLPNPDSAPYGITEGPNGDI-----WFTEMNGNRIGRITD-DGKIREYELP 137 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SCE--EEE-ECSSTTCCEEEEEECTTSCE-----EEEETTTTEEEEECT-TCCEEEEECS
T ss_pred CCEEEeCCCCCeEEEECCC-CcE--EEE-eCCCcCCCceeeEECCCCCE-----EEEecCCceEEEECC-CCCEEEecCC
Confidence 34555543 4566666543 211 111 12223456778999998876 455556788999998 55543222 2
Q ss_pred --cCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC
Q 024185 90 --LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 90 --~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 167 (271)
......++++++++.+++...++.|..||. +++. .......+...+..++++++|+..++...++.|..||. +
T Consensus 138 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~ 212 (299)
T 2z2n_A 138 NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI---TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-S 212 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE---EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE---EEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-C
Confidence 123556999999987776666789999998 5542 22333344566889999999987666666889999998 6
Q ss_pred CeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE-EecCCcceeEEEEEecCCcEEEEeC-CeEE
Q 024185 168 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA-CWNGNIGVVACLKWAPRRAMFVAAS-SVLS 245 (271)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~ 245 (271)
++... +........+.+++++++|+..++...++.|..||. +++... .+..+...+.++++ ++|+++++.+ +.+.
T Consensus 213 g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~ 289 (299)
T 2z2n_A 213 GEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIG 289 (299)
T ss_dssp CCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEE
T ss_pred CcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEE
Confidence 66433 322222244888999999997777667789999998 454322 23444567899999 9999888765 7888
Q ss_pred EEcCCCCC
Q 024185 246 FWIPNPSS 253 (271)
Q Consensus 246 iw~~~~~~ 253 (271)
.++.++++
T Consensus 290 ~~~~~~~~ 297 (299)
T 2z2n_A 290 KLTLIKDN 297 (299)
T ss_dssp EEEEC---
T ss_pred EEEcCccc
Confidence 88887654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-13 Score=108.88 Aligned_cols=237 Identities=9% Similarity=0.002 Sum_probs=151.6
Q ss_pred ecceeEEeeec-----ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhh---------ccCceE
Q 024185 9 PITQALLFARQ-----NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLL---------TTALEY 74 (271)
Q Consensus 9 ~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~---------~~dg~i 74 (271)
|....+++... ++.+..++..+. ..+..+...... . ++++|+|+.+++ +. ..++.|
T Consensus 42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~----~v~~~I~vG~~P-~-va~spDG~~lyV----an~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 42 PDARRVYVNDPAHFAAVTQQFVIDGEAG----RVIGMIDGGFLP-N-PVVADDGSFIAH----ASTVFSRIARGERTDYV 111 (386)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTT----EEEEEEEECSSC-E-EEECTTSSCEEE----EEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEEcCcccCCCCEEEEEECCCC----eEEEEEECCCCC-c-EEECCCCCEEEE----EcccccccccCCCCCEE
Confidence 33445555533 467888887666 333334433344 3 999999998433 22 246789
Q ss_pred EEEEecCcceeEEEecC---------CcceEEEcCCCCEEEEEec--CCeEEEEeCCCCCCCcceEEEecCC--------
Q 024185 75 GIFVLMLASFQGILRLR---------GRPTVAFDQQGLVFAVAME--AGAIKLFDSRSYDKGPFDTFLVGGD-------- 135 (271)
Q Consensus 75 ~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~-------- 135 (271)
.+||..+.+.+..+... ....++++|||++++++.. ++.|.++|+.+++. .....+.+.
T Consensus 112 sviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v--v~tI~v~g~~~~~P~g~ 189 (386)
T 3sjl_D 112 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF--KRMLDVPDCYHIFPTAP 189 (386)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE--EEEEECCSEEEEEEEET
T ss_pred EEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE--EEEEECCCcceeecCCC
Confidence 99999999998888643 2445999999999998864 68999999988764 222211110
Q ss_pred -------------------ccceE----------------EEEEc-CCCcEEEEEecCCeEEEEECCCCe--EEEEeec-
Q 024185 136 -------------------TAEVC----------------DIKFS-NDGKSMLLTTTNNNIYVLDAYGGE--KRCGFSL- 176 (271)
Q Consensus 136 -------------------~~~v~----------------~~~~s-~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~- 176 (271)
.+.+. ...|. ++|++++ .+.+|.+.+.|+.++. ....+..
T Consensus 190 ~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~ 268 (386)
T 3sjl_D 190 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEAL 268 (386)
T ss_dssp TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESS
T ss_pred ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecc
Confidence 01110 01222 3443333 4446677777765443 2222220
Q ss_pred -------CCCCCceeeEEECCCCCEEEEecC----------CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCc-EEE
Q 024185 177 -------EPSPNTNTEATFTPDGQYVVSGSG----------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFV 238 (271)
Q Consensus 177 -------~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~ 238 (271)
...+.....++++|+++.++.... .+.|.+.|+++++.+..+.. ...+.+++++||++ +|+
T Consensus 269 ~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly 347 (386)
T 3sjl_D 269 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLY 347 (386)
T ss_dssp CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEE
T ss_pred ccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEE
Confidence 000112334788999998887642 25799999999999998864 34678999999996 666
Q ss_pred EeC---CeEEEEcCCCCCCCcCCC
Q 024185 239 AAS---SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 239 ~~~---~~v~iw~~~~~~~~~~~~ 259 (271)
++. ++|.++|..+++......
T Consensus 348 ~tn~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 348 ALSTGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp EEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEcCCCCeEEEEECCCCcEEEEec
Confidence 643 889999999999876665
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.2e-12 Score=97.07 Aligned_cols=221 Identities=9% Similarity=0.009 Sum_probs=150.3
Q ss_pred eeEEeeec-ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFARQ-NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
..+.++.. ++.+..++.. +... ..........+..+++.+++.. .++...++.|..||.+ ++. ..+..
T Consensus 26 g~l~v~~~~~~~v~~~d~~-~~~~---~~~~~~~~~~~~~i~~~~~g~l-----~v~~~~~~~i~~~~~~-g~~-~~~~~ 94 (299)
T 2z2n_A 26 GKVWITQHKANMISCINLD-GKIT---EYPLPTPDAKVMCLTISSDGEV-----WFTENAANKIGRITKK-GII-KEYTL 94 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-CCEE---EEECSSTTCCEEEEEECTTSCE-----EEEETTTTEEEEECTT-SCE-EEEEC
T ss_pred CCEEEEecCCCcEEEEcCC-CCeE---EecCCcccCceeeEEECCCCCE-----EEeCCCCCeEEEECCC-CcE-EEEeC
Confidence 44555544 4566666654 3211 1112234467888999999886 4555567889999876 332 23321
Q ss_pred ----CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 91 ----RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 91 ----~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
.....+++.++++++++...++.|..||. +++. .......+...+..+++.++|+..++...++.|..||.
T Consensus 95 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~- 169 (299)
T 2z2n_A 95 PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI---REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE- 169 (299)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE---EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-
T ss_pred CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE---EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-
Confidence 23455899999987777767889999998 4442 23333334567899999999987776666789999998
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEE-ecCCcceeEEEEEecCCcEEEEeC--Ce
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAAS--SV 243 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~--~~ 243 (271)
+++... +........+..++++++|++.++...++.|..||. +++.... ...+...+.+++++++|+++++.. +.
T Consensus 170 ~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 247 (299)
T 2z2n_A 170 SGDITE-FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANK 247 (299)
T ss_dssp TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE
T ss_pred CCcEEE-eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCce
Confidence 666543 222222234788999999998777777889999999 6664332 333456788999999999777763 78
Q ss_pred EEEEcCC
Q 024185 244 LSFWIPN 250 (271)
Q Consensus 244 v~iw~~~ 250 (271)
|..||..
T Consensus 248 i~~~d~~ 254 (299)
T 2z2n_A 248 IGRLTSN 254 (299)
T ss_dssp EEEEETT
T ss_pred EEEECCC
Confidence 9999983
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-13 Score=119.15 Aligned_cols=199 Identities=9% Similarity=-0.071 Sum_probs=128.6
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe-cCCcceEEEcCCCCEEEEEecCCe-----------
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR-LRGRPTVAFDQQGLVFAVAMEAGA----------- 113 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~----------- 113 (271)
..+....|||||+.+++..--.|+....|++||+++++.+.... ......++|+|| +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 46778999999998433100001112579999999998755421 111246899999 98988876553
Q ss_pred ---EEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC-----eEEEEECCCC--eEEEEeecCCCCCce
Q 024185 114 ---IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-----NIYVLDAYGG--EKRCGFSLEPSPNTN 183 (271)
Q Consensus 114 ---i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~--~~~~~~~~~~~~~~v 183 (271)
|++|++.+++...........+...+..+.|||||++|+..+.++ .|++||+.++ +....+..+... .
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~--~ 319 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA--Q 319 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS--C
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc--e
Confidence 899998776531112333233334588999999999998877544 8999999877 313445444332 3
Q ss_pred eeEEECCCCCEEEEecCC----CcEEEEEcCCc--eeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcC
Q 024185 184 TEATFTPDGQYVVSGSGD----GTLHAWNINTR--NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 184 ~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
... ++|+|+.|+..+.+ +.|.+||+.++ +....+..+...+..++|+ ++.++++.. +..++|.+
T Consensus 320 ~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 320 WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 333 34899988877653 45999999874 3444455555667778887 556666664 55555543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.5e-13 Score=107.79 Aligned_cols=229 Identities=9% Similarity=-0.031 Sum_probs=147.4
Q ss_pred eeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhh-----hhhccCceEEEEEecCcceeEEEecC----
Q 024185 21 IILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCL-----VLLTTALEYGIFVLMLASFQGILRLR---- 91 (271)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l-----~s~~~dg~i~iwd~~~~~~~~~~~~~---- 91 (271)
+.+..++..+. ..+..+...... .+.++|+++.+++... ..|..++.|.++|..+++.+..+...
T Consensus 99 ~~VsVID~~t~----~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r 172 (426)
T 3c75_H 99 TQQFVIDGSTG----RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR 172 (426)
T ss_dssp EEEEEEETTTT----EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred CeEEEEECCCC----EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc
Confidence 68888887776 333334443444 6999999998433100 00124779999999999998888643
Q ss_pred -----CcceEEEcCCCCEEEEEec--CCeEEEEeCCCCCCCcceEEEecCC-----ccceEEEE----------------
Q 024185 92 -----GRPTVAFDQQGLVFAVAME--AGAIKLFDSRSYDKGPFDTFLVGGD-----TAEVCDIK---------------- 143 (271)
Q Consensus 92 -----~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~---------------- 143 (271)
....+.++|||++++++.. ++.|.+.|+.+.+. .....+.+. .+.-..+.
T Consensus 173 ~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv--v~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 173 FLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF--DRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp CCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE--EEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred cccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE--EEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 2344999999999999874 57899999998775 222222110 00001122
Q ss_pred ---------------------EcCCCcEEEEEecCCeEEEEECCCCeEE--EEeecCC--------CCCceeeEEECCCC
Q 024185 144 ---------------------FSNDGKSMLLTTTNNNIYVLDAYGGEKR--CGFSLEP--------SPNTNTEATFTPDG 192 (271)
Q Consensus 144 ---------------------~s~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~--------~~~~v~~~~~~~~~ 192 (271)
+.+++..++..+..+.+.+.|....+.. ..+.... .+.....+.++|++
T Consensus 251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg 330 (426)
T 3c75_H 251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS 330 (426)
T ss_dssp CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence 3444444444444556666665443321 1111000 00112237899999
Q ss_pred CEEEEecC----------CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCc-EEEEeC---CeEEEEcCCCCCCCcCC
Q 024185 193 QYVVSGSG----------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS---SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 193 ~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~---~~v~iw~~~~~~~~~~~ 258 (271)
++++.... ++.|.+.|..+++.+.++... ....+++|+|||+ +++++. ++|.++|+.+++.....
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 87776642 357999999999999998643 3478999999998 777764 88999999999987663
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.57 E-value=4.1e-12 Score=99.46 Aligned_cols=211 Identities=11% Similarity=0.034 Sum_probs=137.3
Q ss_pred ceeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 11 TQALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 11 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
.+.+++. ..++.+..++...+.. +.+. ....+.++++++++++ +++ . ++.|.+||.++++......
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~-----~~~~-~~~~~~~i~~~~dG~l-----~v~-~-~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQV-----QRVT-MDAPVSSVALRQSGGY-----VAT-I-GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCE-----EEEE-CSSCEEEEEEBTTSSE-----EEE-E-TTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcE-----EEEe-CCCceEEEEECCCCCE-----EEE-E-CCeEEEEECCCCcEEEEEe
Confidence 3455554 3466777777655422 1122 2456888999999996 222 2 5679999998876543332
Q ss_pred cC------CcceEEEcCCCCEEEEEecC-----------CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEE
Q 024185 90 LR------GRPTVAFDQQGLVFAVAMEA-----------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSML 152 (271)
Q Consensus 90 ~~------~~~~~~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 152 (271)
.. ..+.++++|+|+++++.... +.|+.++.. ++ ...+..+......++|+||++.++
T Consensus 91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~-----~~~~~~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HH-----VKKYFDQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SC-----EEEEEEEESBEEEEEECTTSCEEE
T ss_pred cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CC-----EEEEeeccccccceEEcCCCCEEE
Confidence 21 13458999999966654321 344444443 22 111222334567899999998775
Q ss_pred EE-ecCCeEEEEEC--CCCeEE--EEeec-CCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeE
Q 024185 153 LT-TTNNNIYVLDA--YGGEKR--CGFSL-EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVA 226 (271)
Q Consensus 153 ~~-~~d~~i~~~d~--~~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 226 (271)
.+ +.++.|..||+ .+++.. +.+.. .........++++++|++.++...++.|..||..+++.+..+..+...++
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t 244 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTT 244 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCce
Confidence 54 55789999987 455432 12211 11113467899999999888877788899999999999998887767799
Q ss_pred EEEEe-cCCcEEEEe
Q 024185 227 CLKWA-PRRAMFVAA 240 (271)
Q Consensus 227 ~~~~s-~~~~~l~~~ 240 (271)
+++|. |+++.|..+
T Consensus 245 ~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 245 SCCFGGKNYSEMYVT 259 (297)
T ss_dssp EEEEESGGGCEEEEE
T ss_pred EEEEeCCCCCEEEEE
Confidence 99998 887755444
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-11 Score=100.80 Aligned_cols=221 Identities=8% Similarity=-0.004 Sum_probs=140.9
Q ss_pred eeEEeee-cceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCc--eEEEEEecCcceeEEE
Q 024185 12 QALLFAR-QNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTAL--EYGIFVLMLASFQGIL 88 (271)
Q Consensus 12 ~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~ 88 (271)
..|+++. .+..+..++...+... ..... ..... ++++++++. ++.+..++ .|..++...+.....+
T Consensus 142 g~lyv~d~~~~~I~~id~~~g~~~----~~~~~-~~~~~-ia~~~~g~~-----l~~~d~~~~~~I~~~d~~~~~~~~~~ 210 (409)
T 3hrp_A 142 NTVLAYQRDDPRVRLISVDDNKVT----TVHPG-FKGGK-PAVTKDKQR-----VYSIGWEGTHTVYVYMKASGWAPTRI 210 (409)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEE----EEEET-CCBCB-CEECTTSSE-----EEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred CCEEEEecCCCcEEEEECCCCEEE----Eeecc-CCCCc-eeEecCCCc-----EEEEecCCCceEEEEEcCCCceeEEe
Confidence 4455443 3466777766555221 22222 22223 889999987 44555544 7888888766554444
Q ss_pred ------ecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEE---ecCCccce--EEEEEcCC-CcEEEEEec
Q 024185 89 ------RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL---VGGDTAEV--CDIKFSND-GKSMLLTTT 156 (271)
Q Consensus 89 ------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~v--~~~~~s~~-~~~l~~~~~ 156 (271)
.......++++|++..|+++..++.|+.||..++.. .... ..++...- ..++|+|+ +.++++-..
T Consensus 211 g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~---~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 211 GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV---TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE---EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE---EEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 223456699999666666677788999999987653 1110 12222222 38999995 555555566
Q ss_pred CCeEEEEECCCCeEEEEeecCC-C------------CCceeeEEECCCCCEEEEec-CCCcEEEEEcCCceeEEEecCC-
Q 024185 157 NNNIYVLDAYGGEKRCGFSLEP-S------------PNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRNEVACWNGN- 221 (271)
Q Consensus 157 d~~i~~~d~~~~~~~~~~~~~~-~------------~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~- 221 (271)
++.|+.|+.... ...+.+.. . -.....++++|+|+++++-. .++.|+.||+.+++.. .+.++
T Consensus 288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~ 364 (409)
T 3hrp_A 288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQV 364 (409)
T ss_dssp TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECT
T ss_pred CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCC
Confidence 889999997543 23333222 0 12367899999999888877 8899999998777643 33333
Q ss_pred --------------cceeEEEEEecCCcEEEEeC--CeEEEEcC
Q 024185 222 --------------IGVVACLKWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 222 --------------~~~v~~~~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
-.....++++|+|.++++-. +.|+.+++
T Consensus 365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 13478999999988777765 56777664
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.9e-13 Score=115.73 Aligned_cols=204 Identities=8% Similarity=-0.059 Sum_probs=135.0
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE-ecCCcceEEEcCCCCEEEEEecCC----------
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL-RLRGRPTVAFDQQGLVFAVAMEAG---------- 112 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~---------- 112 (271)
+...+..+.|||||+.+++..-..|+....|++||+++++.+... .......++|+ |++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 445678889999999844311114455578999999999865432 22223558999 999999887764
Q ss_pred ---eEEEEeCCCCCCCcceEEEecC-CccceEEEEEcCCCcEEEEEec----CCeEEEEECCCCe-EEEEeecCCCCCce
Q 024185 113 ---AIKLFDSRSYDKGPFDTFLVGG-DTAEVCDIKFSNDGKSMLLTTT----NNNIYVLDAYGGE-KRCGFSLEPSPNTN 183 (271)
Q Consensus 113 ---~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~-~~~~~~~~~~~~~v 183 (271)
.|++|++.+............. |......+.|+|||++|+.... +..++++|+.+++ ....+..+... .
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~--~ 283 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA--D 283 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS--C
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc--e
Confidence 4999998876532222333333 3445788999999998866543 3589999997763 33444444432 3
Q ss_pred eeEEECCCCCEEEEe-cCC---CcEEEEEcCCcee--EEEecCCcceeEEEEEecCCcEEEEeC-----CeEEEEcCCCC
Q 024185 184 TEATFTPDGQYVVSG-SGD---GTLHAWNINTRNE--VACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPS 252 (271)
Q Consensus 184 ~~~~~~~~~~~l~~~-~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~v~iw~~~~~ 252 (271)
... ++++|..++.. ..+ +.|..+|+.++.. ...+..|...+. .|+++++.|+... ..|++|+++++
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 333 66776655544 333 5799999987654 344555555554 8999999887765 25999998765
Q ss_pred C
Q 024185 253 S 253 (271)
Q Consensus 253 ~ 253 (271)
.
T Consensus 361 ~ 361 (693)
T 3iuj_A 361 R 361 (693)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-12 Score=114.14 Aligned_cols=230 Identities=12% Similarity=0.052 Sum_probs=143.2
Q ss_pred ecceeEEeeecc-----eeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCc-----------
Q 024185 9 PITQALLFARQN-----IILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTAL----------- 72 (271)
Q Consensus 9 ~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg----------- 72 (271)
|..+.++++... ..+..++...+..... ..+...+..++|+|+ +. |+.++.++
T Consensus 172 PDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-----~~~~~~~~~~~wspD-~~-----l~~~~~~~~~~~~~~~~~~ 240 (741)
T 1yr2_A 172 DDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-----ELKWVKFSGLAWLGN-DA-----LLYSRFAEPKEGQAFQALN 240 (741)
T ss_dssp TTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-----EEEEEESCCCEESTT-SE-----EEEEECCCC--------CC
T ss_pred CCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-----cCCCceeccEEEECC-CE-----EEEEEecCcccccccccCC
Confidence 555667776543 3566777666532111 111112356889999 77 44444443
Q ss_pred ---eEEEEEecCcce--eEEEecCC----cceEEEcCCCCEEEEEecCC-----eEEEEeCCCCCCCcceEEEecCCccc
Q 024185 73 ---EYGIFVLMLASF--QGILRLRG----RPTVAFDQQGLVFAVAMEAG-----AIKLFDSRSYDKGPFDTFLVGGDTAE 138 (271)
Q Consensus 73 ---~i~iwd~~~~~~--~~~~~~~~----~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~ 138 (271)
.|++|++.++.. ...+.... ...+.|+|||++|+..+.++ .|++||+.++.... ...+..+...
T Consensus 241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~ 318 (741)
T 1yr2_A 241 YNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP--VTALIPDLKA 318 (741)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC--CEEEECSSSS
T ss_pred CCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc--cEEecCCCCc
Confidence 488999877652 22333321 34589999999988876543 89999998762110 1122234444
Q ss_pred eEEEEEcCCCcEEEEEec----CCeEEEEECCCC-eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC-Cc
Q 024185 139 VCDIKFSNDGKSMLLTTT----NNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN-TR 212 (271)
Q Consensus 139 v~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~ 212 (271)
.... ++|+|+.|+..+. ++.|.+||+.++ .....+..+.. ..+..++++ ++.++++...|+..++|.+. ++
T Consensus 319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g 395 (741)
T 1yr2_A 319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK-DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG 395 (741)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS-SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC-CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence 4444 3588998888775 456999999874 23333332222 236667777 56677788888877776554 46
Q ss_pred eeEEEecC-CcceeEEEEEecCCcEEEEe--C----CeEEEEcCCCCCC
Q 024185 213 NEVACWNG-NIGVVACLKWAPRRAMFVAA--S----SVLSFWIPNPSSN 254 (271)
Q Consensus 213 ~~~~~~~~-~~~~v~~~~~s~~~~~l~~~--~----~~v~iw~~~~~~~ 254 (271)
+....+.. +.+.+..++++|+++.++.. + +++++||+.+++.
T Consensus 396 ~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 396 KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66666654 35678899999998755522 2 6799999988653
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-12 Score=100.36 Aligned_cols=202 Identities=12% Similarity=0.027 Sum_probs=131.1
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe-cCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR-LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYD 123 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 123 (271)
..-..+..|+|++..+ +++...++.|+.||.++++.. .+. ...+..++++++|++++ +. ++.|.+||.++++
T Consensus 12 ~~~~Egp~w~~~~~~l----~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSL----LFVDIPAKKVCRWDSFTKQVQ-RVTMDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQS 84 (297)
T ss_dssp CSBEEEEEEETTTTEE----EEEETTTTEEEEEETTTCCEE-EEECSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTE
T ss_pred CccccCCeEECCCCEE----EEEECCCCEEEEEECCCCcEE-EEeCCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCc
Confidence 3344567888865543 446677899999999887653 333 33466799999999544 44 5689999998766
Q ss_pred CCcceEEEec--CCccceEEEEEcCCCcEEEEEec-----------CCeEEEEECCCCeEEEEeecCCCCCceeeEEECC
Q 024185 124 KGPFDTFLVG--GDTAEVCDIKFSNDGKSMLLTTT-----------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 190 (271)
Q Consensus 124 ~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 190 (271)
. ....... .....+.+++++|+|+++++... .+.|..+|.. ++...... .. .....++|+|
T Consensus 85 ~--~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~-~~--~~pngi~~sp 158 (297)
T 3g4e_A 85 A--VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFD-QV--DISNGLDWSL 158 (297)
T ss_dssp E--EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEE-EE--SBEEEEEECT
T ss_pred E--EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEee-cc--ccccceEEcC
Confidence 3 1111111 12245789999999996665432 2344444432 33332222 21 1256799999
Q ss_pred CCCEEE-EecCCCcEEEEEc--CCcee-----EEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 191 DGQYVV-SGSGDGTLHAWNI--NTRNE-----VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 191 ~~~~l~-~~~~dg~i~iwd~--~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
|++.++ +.+.++.|.+||+ .++.. ...+..+.+....++++++|++.++.. +.|..||.++++......
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 998775 4455789999997 45543 223333445678999999998777764 679999999887655443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.8e-12 Score=102.98 Aligned_cols=199 Identities=7% Similarity=-0.046 Sum_probs=135.4
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCC--eEEEEeCCCCCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAG--AIKLFDSRSYDK 124 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~ 124 (271)
....++++++++. +++...++.|+.||.+++.............++|+++++.|+++..++ .|..++......
T Consensus 132 ~P~~la~d~~g~l-----yv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 132 YMWGIAAVGNNTV-----LAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CEEEEEECSTTEE-----EEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CceEEEEeCCCCE-----EEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 5667899999986 556677899999999888766555554434499999999999887765 799999876543
Q ss_pred CcceEE-Ee-cCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEE----eecCCCCCceeeEEECCC-CCEEEE
Q 024185 125 GPFDTF-LV-GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG----FSLEPSPNTNTEATFTPD-GQYVVS 197 (271)
Q Consensus 125 ~~~~~~-~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~~~~~v~~~~~~~~-~~~l~~ 197 (271)
.... .+ ......+.+++++|++..|+++..++.|+.||..++..... ........+...++|+|+ +.++++
T Consensus 207 --~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 207 --PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp --EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred --eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 1111 11 21446678899999555566677788999999987753322 111111110127999995 555566
Q ss_pred ecCCCcEEEEEcCCceeEEEecCCc---------------ceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCC
Q 024185 198 GSGDGTLHAWNINTRNEVACWNGNI---------------GVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSN 254 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~ 254 (271)
-..++.|+.|+.... +..+.++. .....++++|+|+++++-+ +.|+.|++.++..
T Consensus 285 d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp ETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred eCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence 666889999997543 33332221 2368999999999766654 6799999766653
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-10 Score=90.63 Aligned_cols=221 Identities=11% Similarity=0.044 Sum_probs=148.9
Q ss_pred eeEEeee-cceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFAR-QNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
..+.++. .++.+..++.. +.... .........+..+++.+++.. .++...++.|..+|.. ++.. .+..
T Consensus 31 g~l~v~~~~~~~v~~~~~~-~~~~~---~~~~~~~~~~~~i~~~~~g~l-----~v~~~~~~~v~~~d~~-g~~~-~~~~ 99 (300)
T 2qc5_A 31 GKVWFTQHKANKISSLDQS-GRIKE---FEVPTPDAKVMCLIVSSLGDI-----WFTENGANKIGKLSKK-GGFT-EYPL 99 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEE---EECSSTTCCEEEEEECTTSCE-----EEEETTTTEEEEECTT-SCEE-EEEC
T ss_pred CCEEEEcCCCCeEEEECCC-CceEE---EECCCCCCcceeEEECCCCCE-----EEEecCCCeEEEECCC-CCeE-EecC
Confidence 3455554 34666666654 32111 112233456778899998886 4455567889999987 5543 3322
Q ss_pred ----CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 91 ----RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 91 ----~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
.....+++.++++++++...++.|..+|.. ++. ....+......+..+++.++|+..++...++.|..+|.
T Consensus 100 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~---~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~- 174 (300)
T 2qc5_A 100 PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI---YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN- 174 (300)
T ss_dssp SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE---EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-
T ss_pred CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE---EEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-
Confidence 235568999999877777667899999987 442 23333334567899999999996666556789999998
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEE-ecCCcceeEEEEEecCCcEEEEeC--Ce
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAAS--SV 243 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~--~~ 243 (271)
+++... +........+..++++++|++.++....+.|.+||. +++.... +..+...+.+++++++|+++++.. +.
T Consensus 175 ~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 252 (300)
T 2qc5_A 175 TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQ 252 (300)
T ss_dssp TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE
T ss_pred CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCe
Confidence 555443 332222234788999999988777777788999998 5544332 333455688999999999777763 78
Q ss_pred EEEEcCC
Q 024185 244 LSFWIPN 250 (271)
Q Consensus 244 v~iw~~~ 250 (271)
|..|+..
T Consensus 253 i~~~~~~ 259 (300)
T 2qc5_A 253 IGRITND 259 (300)
T ss_dssp EEEECTT
T ss_pred EEEECCC
Confidence 9999983
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-11 Score=96.75 Aligned_cols=196 Identities=12% Similarity=0.056 Sum_probs=130.9
Q ss_pred eEEeeEEecCCchhhhhhhhh-------hccCceEEEEEecCcceeEEEe------cCCcceEEEcCC-CCEEEEEecCC
Q 024185 47 IRRGLFLSACLQLMIALCLVL-------LTTALEYGIFVLMLASFQGILR------LRGRPTVAFDQQ-GLVFAVAMEAG 112 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~-~~~l~~~~~d~ 112 (271)
...+++|++++.. +++ +..++.|..||..+++...... ...+..++++++ ++ +.+++..+
T Consensus 19 ~~~~~~~~~~g~l-----~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~ 92 (314)
T 1pjx_A 19 GAEGPVFDKNGDF-----YIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRL 92 (314)
T ss_dssp TCEEEEECTTSCE-----EEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTT
T ss_pred CccCceECCCCCE-----EEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCC
Confidence 4456888888876 455 5778999999988777543221 134556899999 65 44444455
Q ss_pred eEEEEeCCCCCCCcceEE-E-e--cCCccceEEEEEcCCCcEEEEEecC---------------CeEEEEECCCCeEEEE
Q 024185 113 AIKLFDSRSYDKGPFDTF-L-V--GGDTAEVCDIKFSNDGKSMLLTTTN---------------NNIYVLDAYGGEKRCG 173 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~-~-~--~~~~~~v~~~~~s~~~~~l~~~~~d---------------~~i~~~d~~~~~~~~~ 173 (271)
.|.+||.. ++. ... . . ......+.+++++++|+++++...+ +.|..||.. ++....
T Consensus 93 ~l~~~d~~-g~~---~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 93 GLLVVQTD-GTF---EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp EEEEEETT-SCE---EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred CEEEEeCC-CCE---EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 79999988 552 111 0 0 1112458899999999877766554 578888865 554333
Q ss_pred eecCCCCCceeeEEEC----CCCCEEEEe-cCCCcEEEEEcC-Cce-----eEEEecCCc-ceeEEEEEecCCcEEEEeC
Q 024185 174 FSLEPSPNTNTEATFT----PDGQYVVSG-SGDGTLHAWNIN-TRN-----EVACWNGNI-GVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 174 ~~~~~~~~~v~~~~~~----~~~~~l~~~-~~dg~i~iwd~~-~~~-----~~~~~~~~~-~~v~~~~~s~~~~~l~~~~ 241 (271)
... .. ....++++ |+++.++.+ ..++.|.+||.. +++ ....+..+. ..+..++++++|+++++..
T Consensus 168 ~~~-~~--~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 168 DTA-FQ--FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEE-ES--SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred ccC-CC--CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence 222 11 25678999 999765544 567899999986 444 223344443 5678999999999888753
Q ss_pred --CeEEEEcCCCCCCCc
Q 024185 242 --SVLSFWIPNPSSNST 256 (271)
Q Consensus 242 --~~v~iw~~~~~~~~~ 256 (271)
+.|.+||.++++...
T Consensus 245 ~~~~i~~~d~~~g~~~~ 261 (314)
T 1pjx_A 245 GSSHIEVFGPDGGQPKM 261 (314)
T ss_dssp TTTEEEEECTTCBSCSE
T ss_pred CCCEEEEEcCCCCcEeE
Confidence 789999998666543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=7.9e-11 Score=93.42 Aligned_cols=208 Identities=14% Similarity=0.074 Sum_probs=132.0
Q ss_pred eeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
+.+++. ..++.+..++...+.. +.+. ....+.++++++++++ +++ +.+ .|.+||.++++.......
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~-----~~~~-~~~~v~~i~~~~dg~l-----~v~-~~~-gl~~~d~~~g~~~~~~~~ 127 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRK-----TVHA-LPFMGSALAKISDSKQ-----LIA-SDD-GLFLRDTATGVLTLHAEL 127 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEE-----EEEE-CSSCEEEEEEEETTEE-----EEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred CEEEEEECCCCEEEEEECCCCcE-----EEEE-CCCcceEEEEeCCCeE-----EEE-ECC-CEEEEECCCCcEEEEeeC
Confidence 344443 3456666666544421 1122 2356888999999987 332 334 499999988775433321
Q ss_pred C------CcceEEEcCCCCEEEEEec------CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEE-ecC
Q 024185 91 R------GRPTVAFDQQGLVFAVAME------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTN 157 (271)
Q Consensus 91 ~------~~~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d 157 (271)
. ....++++|+|+++++... .+.|+.++ +++. ..+..+......++|+||++.++.+ +.+
T Consensus 128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-----~~~~~~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-----TKLFADISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-----EEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-----EEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence 1 2345899999996665432 24566666 3332 1121223456789999999877655 457
Q ss_pred CeEEEEECC--CC-eEE--EEee-cCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEe
Q 024185 158 NNIYVLDAY--GG-EKR--CGFS-LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA 231 (271)
Q Consensus 158 ~~i~~~d~~--~~-~~~--~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 231 (271)
+.|.+||+. ++ +.. ..+. ..........++++++|++.++...++.|..||. +++.+..+..+...+.+++|+
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEe
Confidence 899999986 55 321 1221 1111233677999999998777766788999998 677777777666679999998
Q ss_pred -cCCcEEEEe
Q 024185 232 -PRRAMFVAA 240 (271)
Q Consensus 232 -~~~~~l~~~ 240 (271)
|+++.|+.+
T Consensus 280 g~d~~~L~vt 289 (326)
T 2ghs_A 280 GPDASRLLVT 289 (326)
T ss_dssp STTSCEEEEE
T ss_pred cCCCCEEEEE
Confidence 887766444
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-13 Score=108.29 Aligned_cols=148 Identities=11% Similarity=0.024 Sum_probs=109.9
Q ss_pred CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCC---------CCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEE
Q 024185 91 RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYD---------KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 161 (271)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 161 (271)
..++.+++++...++++|+.+ .+.+|+++... ..+.... .+.. |+.++| |+++|+++ .++.|+
T Consensus 38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~---~lp~-V~~l~f--d~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK---EIPD-VIFVCF--HGDQVLVS-TRNALY 109 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE---ECTT-EEEEEE--ETTEEEEE-ESSEEE
T ss_pred ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe---eCCC-eeEEEE--CCCEEEEE-cCCcEE
Confidence 356779999999999999977 56669865322 1111122 2455 999999 89999998 889999
Q ss_pred EEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 162 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
+||+++.........+... +.++.+.+. .+++++.||.+.+||+.++.... +...|++++|||+|..+....
T Consensus 110 v~dv~sl~~~~~~~~~~~~--v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG~~vg~~d 181 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKP--VFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQLAVLLKD 181 (388)
T ss_dssp EEESSSTTCEEEEEECSSC--EEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSEEEEEETT
T ss_pred EEEchhhhccCccceeecc--eeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCceEEEEcC
Confidence 9999876655555555544 767766654 38888999999999999877654 446799999999994443334
Q ss_pred CeEEEEcCCCCCC
Q 024185 242 SVLSFWIPNPSSN 254 (271)
Q Consensus 242 ~~v~iw~~~~~~~ 254 (271)
|++++|+.+.++.
T Consensus 182 g~i~~~~~~~~~~ 194 (388)
T 1xip_A 182 RSFQSFAWRNGEM 194 (388)
T ss_dssp SCEEEEEEETTEE
T ss_pred CcEEEEcCCCccc
Confidence 9999999887764
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.7e-11 Score=95.33 Aligned_cols=194 Identities=12% Similarity=-0.011 Sum_probs=126.8
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCc
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP 126 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 126 (271)
......|+|++..+ +++...++.|..||.++++.........+.+++++++++++++. +..|.+||..+++.
T Consensus 50 ~~egp~~~~~~~~l----~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~-- 121 (326)
T 2ghs_A 50 LGEGPTFDPASGTA----WWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS--DDGLFLRDTATGVL-- 121 (326)
T ss_dssp BEEEEEEETTTTEE----EEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCE--
T ss_pred CCcCCeEeCCCCEE----EEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcE--
Confidence 34567899976543 44666788999999987764322223346678999999876654 34599999887763
Q ss_pred ceEEEec--CCccceEEEEEcCCCcEEEEEec------CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEe
Q 024185 127 FDTFLVG--GDTAEVCDIKFSNDGKSMLLTTT------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 198 (271)
Q Consensus 127 ~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 198 (271)
....... .....+.+++++|+|+++++... .+.|..++ +++...... ... ....++|+||++.++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-~~~--~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-DIS--IPNSICFSPDGTTGYFV 196 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-EES--SEEEEEECTTSCEEEEE
T ss_pred EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-CCc--ccCCeEEcCCCCEEEEE
Confidence 1111111 11246889999999986665432 25666666 555433222 211 25679999999877554
Q ss_pred -cCCCcEEEEEcC--Cc-e-----eEEEecCCcceeEEEEEecCCcEEEEe--CCeEEEEcCCCCCC
Q 024185 199 -SGDGTLHAWNIN--TR-N-----EVACWNGNIGVVACLKWAPRRAMFVAA--SSVLSFWIPNPSSN 254 (271)
Q Consensus 199 -~~dg~i~iwd~~--~~-~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~v~iw~~~~~~~ 254 (271)
+.++.|.+||+. ++ + ....+........+++++++|+++++. ++.|..||.. ++.
T Consensus 197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~ 262 (326)
T 2ghs_A 197 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNH 262 (326)
T ss_dssp ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCE
T ss_pred ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCE
Confidence 557899999986 55 3 223333344567889999999977776 3789999984 443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-11 Score=92.79 Aligned_cols=217 Identities=8% Similarity=0.056 Sum_probs=139.3
Q ss_pred ecceeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 9 PITQALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 9 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
|..+.|++. ..++.+..++. .+. .+.+..+...+..++++++|+. +++...++.|..|+.+ ++....
T Consensus 54 ~~g~~l~~~d~~~~~i~~~~~-~g~-----~~~~~~~~~~~~gl~~d~dG~l-----~v~~~~~~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 54 EAQRTLVWSDLVGRRVLGWRE-DGT-----VDVLLDATAFTNGNAVDAQQRL-----VHCEHGRRAITRSDAD-GQAHLL 121 (305)
T ss_dssp GGGTEEEEEETTTTEEEEEET-TSC-----EEEEEESCSCEEEEEECTTSCE-----EEEETTTTEEEEECTT-SCEEEE
T ss_pred CCCCEEEEEECCCCEEEEEeC-CCC-----EEEEeCCCCccceeeECCCCCE-----EEEECCCCEEEEECCC-CCEEEE
Confidence 333445554 44677777765 342 1234445667888999999986 4444556789999885 553322
Q ss_pred Eec------CCcceEEEcCCCCEEEE----Eec-------------CCeEEEEeCCCCCCCcceEEEecCCccceEEEEE
Q 024185 88 LRL------RGRPTVAFDQQGLVFAV----AME-------------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF 144 (271)
Q Consensus 88 ~~~------~~~~~~~~~~~~~~l~~----~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (271)
... .....++++++|+++++ |.. .+.|+.+|..+++. .... .......++|
T Consensus 122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~----~~~~--~~~~p~gl~~ 195 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL----QRMA--DLDHPNGLAF 195 (305)
T ss_dssp ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC----EEEE--EESSEEEEEE
T ss_pred EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE----EEEe--cCCCCcceEE
Confidence 211 12456999999997775 321 25688888876664 1111 3345678999
Q ss_pred cCCCcEEEEEecC------CeEEEEECCCCeEE--EEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE
Q 024185 145 SNDGKSMLLTTTN------NNIYVLDAYGGEKR--CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 216 (271)
Q Consensus 145 s~~~~~l~~~~~d------~~i~~~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 216 (271)
+||++.|+.+... +.|+.||+..+... ..+. .........++++++|++.+ ++.+ .|.+|+. +++.+.
T Consensus 196 spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~-~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~g~~~~ 271 (305)
T 3dr2_A 196 SPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA-SVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS-DGQLLG 271 (305)
T ss_dssp CTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE-CCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-TSCEEE
T ss_pred cCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE-ECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-CCCEEE
Confidence 9999988877665 78999998765421 1121 11112355689999999544 4444 4999998 577777
Q ss_pred EecCCcceeEEEEEecCCcEEEEeC-CeEEEEc
Q 024185 217 CWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWI 248 (271)
Q Consensus 217 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~ 248 (271)
.+..+. .+.+++|+|+++.|..++ +.+..++
T Consensus 272 ~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 272 HIPTPG-TASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp EEECSS-CCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred EEECCC-ceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 776554 588999999987666554 6555444
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-10 Score=88.00 Aligned_cols=221 Identities=9% Similarity=0.022 Sum_probs=142.6
Q ss_pred eeEEeeec-ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE-Ee
Q 024185 12 QALLFARQ-NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI-LR 89 (271)
Q Consensus 12 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~ 89 (271)
..+.++.. ++.+..++.. +... . ............+++.+++.. +++...++.|..+|.+ ++.... +.
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~~--~-~~~~~~~~~~~~i~~~~~g~l-----~v~~~~~~~i~~~~~~-g~~~~~~~~ 142 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGFT--E-YPLPQPDSGPYGITEGLNGDI-----WFTQLNGDRIGKLTAD-GTIYEYDLP 142 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEE--E-EECSSTTCCEEEEEECSTTCE-----EEEETTTTEEEEECTT-SCEEEEECS
T ss_pred CCEEEEecCCCeEEEECCC-CCeE--E-ecCCCCCCCCccceECCCCCE-----EEEccCCCeEEEECCC-CCEEEccCC
Confidence 34444443 4556666554 3211 1 112223356778999998886 4555557889999887 554322 22
Q ss_pred --cCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC
Q 024185 90 --LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 90 --~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 167 (271)
......+++.++++..++...++.|..+|. +++. .......+...+..+++.++|+..++....+.|..||. +
T Consensus 143 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~---~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 217 (300)
T 2qc5_A 143 NKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKL---EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-T 217 (300)
T ss_dssp STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE---EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred CCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcE---EEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-C
Confidence 123456899999996666656789999998 4442 23333344567889999999986666666778999998 5
Q ss_pred CeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE-EecCCcceeEEEEEecCCcEEEEeCCeEEE
Q 024185 168 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA-CWNGNIGVVACLKWAPRRAMFVAASSVLSF 246 (271)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~v~i 246 (271)
++.... ........+.+++++++|+..++...++.|..+|. +++... .+......+.+++++++|+++++..+.|..
T Consensus 218 g~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~i~~ 295 (300)
T 2qc5_A 218 GEISEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALKCKIGK 295 (300)
T ss_dssp CCEEEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECSSEEEE
T ss_pred CcEEEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEccCceEE
Confidence 554332 22222234788999999997777766789999998 444332 233344568899999999977766445555
Q ss_pred EcC
Q 024185 247 WIP 249 (271)
Q Consensus 247 w~~ 249 (271)
+|+
T Consensus 296 ~~p 298 (300)
T 2qc5_A 296 LNL 298 (300)
T ss_dssp EEE
T ss_pred eCC
Confidence 554
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-11 Score=99.23 Aligned_cols=216 Identities=8% Similarity=0.046 Sum_probs=142.1
Q ss_pred ecceeeEEEEeeccceeeEEEEEcc-------cccceEEeeEEecCCchhhhhhhhhhccC------ceEEEEEecCcce
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFA-------TSKGIRRGLFLSACLQLMIALCLVLLTTA------LEYGIFVLMLASF 84 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~ 84 (271)
..+..+..++....-..+...+..+ .....-..+..+|+| . ++++..+ |.+.+.|.++++.
T Consensus 103 l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i-----~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 103 LRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-I-----YISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp TTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-E-----EEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred CCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-E-----EEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 4467888888764434455555553 111234457788998 4 3344444 7899999999999
Q ss_pred eEEEecCC-----cceEEEcCCCCEEEEEe-------------------cCCeEEEEeCCCCCCCcceEEEecCCccceE
Q 024185 85 QGILRLRG-----RPTVAFDQQGLVFAVAM-------------------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 140 (271)
Q Consensus 85 ~~~~~~~~-----~~~~~~~~~~~~l~~~~-------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 140 (271)
+.++.... ...+.|+|+++.++++. .+.+|.+||+.+++. .....+........
T Consensus 177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~--~~tI~vg~~g~~P~ 254 (462)
T 2ece_A 177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR--IHSLTLGEENRMAL 254 (462)
T ss_dssp EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE--EEEEESCTTEEEEE
T ss_pred EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE--eeEEecCCCCCccc
Confidence 98886432 12388899999888874 368999999998654 34444432223455
Q ss_pred EEEE--cCCCcEEEEEec------CCeEEEEECCCCeE--EEEeecCCC----------------CCceeeEEECCCCCE
Q 024185 141 DIKF--SNDGKSMLLTTT------NNNIYVLDAYGGEK--RCGFSLEPS----------------PNTNTEATFTPDGQY 194 (271)
Q Consensus 141 ~~~~--s~~~~~l~~~~~------d~~i~~~d~~~~~~--~~~~~~~~~----------------~~~v~~~~~~~~~~~ 194 (271)
.+.| +|+++++++++. +++|.+|....++. .+.+..... ......+.+||||++
T Consensus 255 ~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrf 334 (462)
T 2ece_A 255 ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKF 334 (462)
T ss_dssp EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCE
T ss_pred eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCE
Confidence 6666 999999888774 56887776554432 111111100 123667999999999
Q ss_pred EEEecC-CCcEEEEEcCC---ceeEEEecCCc--------------ceeEEEEEecCCcEEEEeC
Q 024185 195 VVSGSG-DGTLHAWNINT---RNEVACWNGNI--------------GVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 195 l~~~~~-dg~i~iwd~~~---~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~ 241 (271)
|+++.. .+.|.+||+.. .+.+..+.... +.-..++++|||++|+++.
T Consensus 335 LYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 335 LYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 988776 68999999863 35555553221 1257899999999888776
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-11 Score=98.67 Aligned_cols=192 Identities=10% Similarity=0.006 Sum_probs=131.8
Q ss_pred eEEecCCchhhhhhhhhhc----cCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEe----------cCCeEEE
Q 024185 51 LFLSACLQLMIALCLVLLT----TALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAM----------EAGAIKL 116 (271)
Q Consensus 51 ~~~s~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~i~i 116 (271)
....|+++.+++ +-. .++.|.+.|..+++.+..++....+.++++|||++++++. .++.|.+
T Consensus 38 ~~~~pd~~~vyV----~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 38 EAPAPDARRVYV----NDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCCCCCTTEEEE----EECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred eccCCCCCEEEE----EcCcccCCCCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 445688877433 322 2689999999999999999866555699999999888775 3578999
Q ss_pred EeCCCCCCCcceEEEecC-C----ccceEEEEEcCCCcEEEEEec--CCeEEEEECCCCeEEEEeecCCCCCceeeEEEC
Q 024185 117 FDSRSYDKGPFDTFLVGG-D----TAEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 189 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~-~----~~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~ 189 (271)
||..+.+. .....+.. . ......++++|||+++++++. ++.|.++|+.+++.+.++.... + ...+.
T Consensus 114 iD~~t~~v--~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~-~~~~P 186 (386)
T 3sjl_D 114 FDPVTLLP--TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----C-YHIFP 186 (386)
T ss_dssp ECTTTCCE--EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----E-EEEEE
T ss_pred EECCCCeE--EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----c-ceeec
Confidence 99998775 33333322 0 124557899999999998874 6899999999999998886432 1 12232
Q ss_pred CCCCEEEEecCCCcEEEEEcCC-ceeEEEecCC----ccee-EEEEEe-cCCcEEEEeC-CeEEEEcCCCCC
Q 024185 190 PDGQYVVSGSGDGTLHAWNINT-RNEVACWNGN----IGVV-ACLKWA-PRRAMFVAAS-SVLSFWIPNPSS 253 (271)
Q Consensus 190 ~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v-~~~~~s-~~~~~l~~~~-~~v~iw~~~~~~ 253 (271)
...+.+++.+.||.+.+.++.+ ++.......+ ..++ ...+|. ++|++++.+. |.+.+.|+.+..
T Consensus 187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 187 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD 258 (386)
T ss_dssp EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred CCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCc
Confidence 3345666777788888888865 5543322111 1222 224664 6887655554 999999997765
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-11 Score=90.14 Aligned_cols=204 Identities=9% Similarity=0.033 Sum_probs=138.5
Q ss_pred EEEEcccccc-eEEeeEEecCCchhhhhhhhhhc--cCceEEEEEecCcceeEEEecCCc-ceEEEcCCCCEEEEE-ecC
Q 024185 37 IIEFFATSKG-IRRGLFLSACLQLMIALCLVLLT--TALEYGIFVLMLASFQGILRLRGR-PTVAFDQQGLVFAVA-MEA 111 (271)
Q Consensus 37 ~~~~~~~~~~-~v~~~~~s~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~d 111 (271)
.++.+..... ....+.+++++.. +++.+ .++.|+++|+.+++.+..+..... ....+..+++.|+.+ -.+
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~dg~L-----yvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~ 85 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAENDTL-----FESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLK 85 (266)
T ss_dssp EEEEEECCTTCCEEEEEECSTTEE-----EEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTC
T ss_pred EEEEEECCCCCCcccEEEeCCCeE-----EEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecC
Confidence 3444543332 3578999998754 33443 368999999999999988864432 222233345556555 457
Q ss_pred CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC---CceeeEEE
Q 024185 112 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---NTNTEATF 188 (271)
Q Consensus 112 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~ 188 (271)
+.+.++|..+.+. ...+... ... ...+++||+.++++..++.|.++|..+.+.+..+...... .....+.|
T Consensus 86 ~~v~viD~~t~~v--~~~i~~g-~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 86 NIGFIYDRRTLSN--IKNFTHQ-MKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp SEEEEEETTTTEE--EEEEECC-SSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred CEEEEEECCCCcE--EEEEECC-CCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence 8999999998775 3333332 111 2346678888888878899999999999888887644321 12566788
Q ss_pred CCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc-------------ceeEEEEEecCCcEEEEeC---CeEEEEcCCCC
Q 024185 189 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI-------------GVVACLKWAPRRAMFVAAS---SVLSFWIPNPS 252 (271)
Q Consensus 189 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~ 252 (271)
. +|+..+....++.|.+.|..+++.+..+.... ...+.++|+|+++.++.++ +++.+.++...
T Consensus 160 ~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 160 I-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 7 77655555567899999999999998885321 2458999999987555544 67877777654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-11 Score=95.98 Aligned_cols=196 Identities=11% Similarity=0.030 Sum_probs=128.9
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec--CCcceEEEcCCCCEEEEEecCCeEEEEeCC
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL--RGRPTVAFDQQGLVFAVAMEAGAIKLFDSR 120 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 120 (271)
..........|+|+++.+ +++...++.|..|+. +++. ..+.. .....++++++|+++++...++.|..|+..
T Consensus 42 ~~~~~~egp~~~~~g~~l----~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTL----VWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp CCCSSEEEEEEEGGGTEE----EEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred cCCcCccCCeEeCCCCEE----EEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 344455678999999843 457778899999988 4542 33333 335669999999966665556789999986
Q ss_pred CCCCCcceEEE--ecCC-ccceEEEEEcCCCcEEEE----Eec-------------CCeEEEEECCCCeEEEEeecCCCC
Q 024185 121 SYDKGPFDTFL--VGGD-TAEVCDIKFSNDGKSMLL----TTT-------------NNNIYVLDAYGGEKRCGFSLEPSP 180 (271)
Q Consensus 121 ~~~~~~~~~~~--~~~~-~~~v~~~~~s~~~~~l~~----~~~-------------d~~i~~~d~~~~~~~~~~~~~~~~ 180 (271)
++. .... ..+. ...+.+++++|+|+..++ |.. .+.|..+|..+++..... ..
T Consensus 116 -g~~---~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~-- 187 (305)
T 3dr2_A 116 -GQA---HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL-- 187 (305)
T ss_dssp -SCE---EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE--
T ss_pred -CCE---EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC--
Confidence 442 1111 1111 134678999999997775 321 256888887666654333 21
Q ss_pred CceeeEEECCCCCEEEEecCC------CcEEEEEcCCceeE--EEe-cCCcceeEEEEEecCCcEEEEeCCeEEEEcCCC
Q 024185 181 NTNTEATFTPDGQYVVSGSGD------GTLHAWNINTRNEV--ACW-NGNIGVVACLKWAPRRAMFVAASSVLSFWIPNP 251 (271)
Q Consensus 181 ~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~--~~~-~~~~~~v~~~~~s~~~~~l~~~~~~v~iw~~~~ 251 (271)
.....++|+||++.|+.+... +.|.+|++..+... ..+ ....+....++++++|++.++..+.|.+|+.+.
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~gv~~~~~~g 267 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTGVCVFDSDG 267 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSSEEEEECTTS
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCCcEEEECCCC
Confidence 226679999999988776654 68999998765411 111 112334567899999996666556799999854
Q ss_pred C
Q 024185 252 S 252 (271)
Q Consensus 252 ~ 252 (271)
.
T Consensus 268 ~ 268 (305)
T 3dr2_A 268 Q 268 (305)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.7e-12 Score=99.90 Aligned_cols=221 Identities=7% Similarity=-0.093 Sum_probs=139.8
Q ss_pred eeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhh---------ccCceEEEEEecCcceeEEEecC-
Q 024185 22 ILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLL---------TTALEYGIFVLMLASFQGILRLR- 91 (271)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~- 91 (271)
.+..++..++ ..+..+...... .+.++|+++.+++ +. ..++.|.+||..+++.+.++..+
T Consensus 47 ~vsvID~~t~----~v~~~i~vG~~P--~i~~spDg~~lyV----an~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~ 116 (368)
T 1mda_H 47 ENWVSCAGCG----VTLGHSLGAFLS--LAVAGHSGSDFAL----ASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD 116 (368)
T ss_dssp EEEEEETTTT----EEEEEEEECTTC--EEEECTTSSCEEE----EEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT
T ss_pred eEEEEECCCC----eEEEEEeCCCCC--ceEECCCCCEEEE----EcccccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence 6667776666 333334443444 6999999998433 22 25789999999999999998654
Q ss_pred --------CcceEEEcCCCCEEEEEec--CCeEEE--EeCCCCCCCcceEEEecC----------------CccceEEEE
Q 024185 92 --------GRPTVAFDQQGLVFAVAME--AGAIKL--FDSRSYDKGPFDTFLVGG----------------DTAEVCDIK 143 (271)
Q Consensus 92 --------~~~~~~~~~~~~~l~~~~~--d~~i~i--~d~~~~~~~~~~~~~~~~----------------~~~~v~~~~ 143 (271)
....++++|||++++++.. +..+.+ +|..+ . ......+ ..+.+..+.
T Consensus 117 ~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v---~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd 191 (368)
T 1mda_H 117 APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--D---QLTKSASCFHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp SCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--E---EEEECSSCCCCEEEETTEEECCCCTTSCEEEE
T ss_pred ccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--c---eEEECCCceEEccCCCeEEEEEcCCCCEEEEE
Confidence 3455999999999999864 457888 88855 1 0111100 000000000
Q ss_pred --------------------------EcCCCcEEEEEecCCeEEEEECCCCe--EEEEeecCC--------CCCceeeEE
Q 024185 144 --------------------------FSNDGKSMLLTTTNNNIYVLDAYGGE--KRCGFSLEP--------SPNTNTEAT 187 (271)
Q Consensus 144 --------------------------~s~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~--------~~~~v~~~~ 187 (271)
.++++..++..+. +.+.+.|+.+.+ .+..+.... .+.....+.
T Consensus 192 ~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~ 270 (368)
T 1mda_H 192 LAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA 270 (368)
T ss_dssp CCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred CccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeE
Confidence 1333444444444 677777775432 222222110 001122278
Q ss_pred ECCCCCEEEEecC---------CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCc-EEEEeC---CeEEEEcCCCCCC
Q 024185 188 FTPDGQYVVSGSG---------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS---SVLSFWIPNPSSN 254 (271)
Q Consensus 188 ~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~---~~v~iw~~~~~~~ 254 (271)
++||++.++.+.. ++.+.++|+.+++.+..+.... ...+++|+|||+ ++++.. ++|.++|+.+++.
T Consensus 271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred EcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 9999998886543 2356699999999999886543 578999999997 344432 7899999999988
Q ss_pred CcCCC
Q 024185 255 STDES 259 (271)
Q Consensus 255 ~~~~~ 259 (271)
.....
T Consensus 350 v~~I~ 354 (368)
T 1mda_H 350 QSSVE 354 (368)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 77665
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.7e-14 Score=112.62 Aligned_cols=217 Identities=11% Similarity=-0.042 Sum_probs=118.8
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
+.++++..++.+..++..+|... ..+.. +.+.+..+.+++.. +++++.||.++.||.++++.+..++.+
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~----W~~~~--~~~~s~p~~~~g~~-----~v~~s~dg~l~a~d~~tG~~~w~~~~~ 78 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIK----WTLKE--DPVLQVPTHVEEPA-----FLPDPNDGSLYTLGSKNNEGLTKLPFT 78 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEE----EEEEC--CCSCCCC-----CC-----EEECTTTCCEEEC-----CCSEECSCC
T ss_pred CEEEEEcCCCEEEEEECCCCCEE----EEecC--CCceecceEcCCCE-----EEEeCCCCEEEEEECCCCceeeeeecc
Confidence 45667777899999998877332 22333 33444445556655 556789999999999999876666443
Q ss_pred C---cc-eEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC
Q 024185 92 G---RP-TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 92 ~---~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 167 (271)
. .. ...+. ++..+++++.++.++.||.++++. ...+..+. ...++|++..+++++.|+.|+.||.++
T Consensus 79 ~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~----~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~t 149 (369)
T 2hz6_A 79 IPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEK----QQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKT 149 (369)
T ss_dssp HHHHHTTCSCC------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSS
T ss_pred CccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcE----EEEecCCC----cccccccCCEEEEEecCCEEEEEECCC
Confidence 1 11 11111 345678888899999999999886 44433332 235667888899999999999999999
Q ss_pred CeEEEEeecCCCCCceeeEEECCCC---CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEE----EEe
Q 024185 168 GEKRCGFSLEPSPNTNTEATFTPDG---QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMF----VAA 240 (271)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l----~~~ 240 (271)
++.+..+.... .....++++. ..+++++.+|.++.||.++++.+.........+....++++|... +.+
T Consensus 150 G~~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~ 225 (369)
T 2hz6_A 150 RELRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHINVA 225 (369)
T ss_dssp SSCCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEECCEEEE
T ss_pred CCEEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEeccceeec
Confidence 98776654322 1223344432 457778889999999999999988776433333344556676532 223
Q ss_pred CCeEEEEcCCCC
Q 024185 241 SSVLSFWIPNPS 252 (271)
Q Consensus 241 ~~~v~iw~~~~~ 252 (271)
++.++.+|..++
T Consensus 226 ~~~l~~ld~~tG 237 (369)
T 2hz6_A 226 VETLRYLTFMSG 237 (369)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccceeeeehhcC
Confidence 344555554443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-14 Score=116.42 Aligned_cols=178 Identities=14% Similarity=0.039 Sum_probs=100.7
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCcc-ceE-EE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA-EVC-DI 142 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~v~-~~ 142 (271)
+++++.||.++.||.++|+.+..+....+.+..+..++..+++++.||.|+.||.++++. ......+.. .+. ..
T Consensus 12 v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~----~w~~~~~~~~~~~~sp 87 (369)
T 2hz6_A 12 LFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG----LTKLPFTIPELVQASP 87 (369)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CC----SEECSCCHHHHHTTCS
T ss_pred EEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCce----eeeeeccCccccccCc
Confidence 567889999999999999998888774444444556777777778899999999988875 333322211 111 11
Q ss_pred EEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc
Q 024185 143 KFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI 222 (271)
Q Consensus 143 ~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 222 (271)
.+. ++..+++++.++.++.||.++|+.+..+..+.. ..++|++..+++++.++.|+.||.++++.+..+..+.
T Consensus 88 ~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~------~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 88 CRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA------DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred eEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc------ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 111 345678888899999999999998877764431 3456788899999999999999999998876654221
Q ss_pred ceeEEEEEecC----CcEEEEeC-CeEEEEcCCCCCCC
Q 024185 223 GVVACLKWAPR----RAMFVAAS-SVLSFWIPNPSSNS 255 (271)
Q Consensus 223 ~~v~~~~~s~~----~~~l~~~~-~~v~iw~~~~~~~~ 255 (271)
.....++++ +.+++.+. |.+..||.++++.+
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred --ccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence 233344443 44444443 88999999988764
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-10 Score=101.33 Aligned_cols=236 Identities=12% Similarity=0.021 Sum_probs=154.0
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccc-c----ceEEeeEEecCCchhhhhhhhhhc-----cCceEEEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATS-K----GIRRGLFLSACLQLMIALCLVLLT-----TALEYGIFVLML 81 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~v~~~~~s~~~~~~~~~~l~s~~-----~dg~i~iwd~~~ 81 (271)
..++++..++.+..++..+|... ..+... . ..+...-...++.. ++..+ .++.|+.+|.++
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~~~----W~~~~~~~~~~~~~~~~~p~v~~~~v-----~v~~~~~~~~~~g~v~a~D~~t 199 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGKEV----WHQNTFEGQKGSLTITGAPRVFKGKV-----IIGNGGAEYGVRGYITAYDAET 199 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCEE----EEEETTTTCCSSCBCCSCCEEETTEE-----EECCBCTTTCCBCEEEEEETTT
T ss_pred CEEEEEcCCCEEEEEECCCCCEE----eeecCCcCcCcCcccccCcEEECCEE-----EEEecccccCCCCEEEEEECCC
Confidence 45666677888999988877322 223222 1 11111111123333 22222 379999999999
Q ss_pred cceeEEEecCCc----------------------------------ceEEEcCCCCEEEEEecCC---------------
Q 024185 82 ASFQGILRLRGR----------------------------------PTVAFDQQGLVFAVAMEAG--------------- 112 (271)
Q Consensus 82 ~~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~~d~--------------- 112 (271)
|+.+..+..... ..++++|++..++.+..++
T Consensus 200 G~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~ 279 (677)
T 1kb0_A 200 GERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDN 279 (677)
T ss_dssp CCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCC
T ss_pred CcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCC
Confidence 998877753210 1378899999898887654
Q ss_pred ----eEEEEeCCCCCCCcceEEEecCCc-------cceEEEEEcCCC---cEEEEEecCCeEEEEECCCCeEEEEeecCC
Q 024185 113 ----AIKLFDSRSYDKGPFDTFLVGGDT-------AEVCDIKFSNDG---KSMLLTTTNNNIYVLDAYGGEKRCGFSLEP 178 (271)
Q Consensus 113 ----~i~i~d~~~~~~~~~~~~~~~~~~-------~~v~~~~~s~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 178 (271)
.|..+|.++++. .-.+....|. ....-+....+| +.++.++.+|.++++|.++|+.+..+....
T Consensus 280 ~~~~sv~AlD~~TG~~--~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~ 357 (677)
T 1kb0_A 280 LYLASIVALDPDTGKY--KWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVP 357 (677)
T ss_dssp TTTTEEEEECTTTCCE--EEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC
T ss_pred eeeEEEEEEECCCCCE--EEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccc
Confidence 599999999886 2122222231 122223344477 678899999999999999999887665321
Q ss_pred CC---------Cc------------------------eeeEEECCCCCEEEEecC-------------------------
Q 024185 179 SP---------NT------------------------NTEATFTPDGQYVVSGSG------------------------- 200 (271)
Q Consensus 179 ~~---------~~------------------------v~~~~~~~~~~~l~~~~~------------------------- 200 (271)
.+ .. -..++++|++.++++...
T Consensus 358 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 437 (677)
T 1kb0_A 358 VNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSG 437 (677)
T ss_dssp CSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGG
T ss_pred cCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccc
Confidence 10 00 014688999888876532
Q ss_pred ------------------CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 201 ------------------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 201 ------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
.|.|..||+.+++.+..++ +..++.+..++.++.+++.++ +.+++||.++++.+....
T Consensus 438 ~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 438 TGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp GTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 2789999999999988876 333445556677777777776 899999999999876554
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-10 Score=92.46 Aligned_cols=187 Identities=9% Similarity=0.038 Sum_probs=124.0
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhcc-----CceEEEEEecCcceeEEEecC--------CcceEEEcCCCCEEEEE-e
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTT-----ALEYGIFVLMLASFQGILRLR--------GRPTVAFDQQGLVFAVA-M 109 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~-~ 109 (271)
+-..+..++++++++. +++-.. ++.|.+||+++++.+..+..+ ....+++++++..++.+ .
T Consensus 65 ~~~~p~gv~~d~~g~L-----~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~ 139 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIV-----WMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDP 139 (343)
T ss_dssp CCSCEEEEEECSSSEE-----EEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEEC
T ss_pred ceeEeeEEEEcCCCcE-----EEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcC
Confidence 3457888999999886 222222 578999999999877777542 12558999876555544 3
Q ss_pred ---cCCeEEEEeCCCCCCCcceEEEecCC-----------------------------ccceEEEEEcCCCcEEEEEecC
Q 024185 110 ---EAGAIKLFDSRSYDKGPFDTFLVGGD-----------------------------TAEVCDIKFSNDGKSMLLTTTN 157 (271)
Q Consensus 110 ---~d~~i~i~d~~~~~~~~~~~~~~~~~-----------------------------~~~v~~~~~s~~~~~l~~~~~d 157 (271)
.++.|.+||..+++. ...+.+| ...+..++|+|||+.|+++..+
T Consensus 140 ~~~~~~~i~v~d~~~g~~----~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~ 215 (343)
T 2qe8_A 140 APDDKAALIRVDLQTGLA----ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH 215 (343)
T ss_dssp CSGGGCEEEEEETTTCCE----EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS
T ss_pred ccCCCCeEEEEECCCCCE----EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC
Confidence 578999999986653 1212111 0235789999999988888765
Q ss_pred C-eEEEEECC---CCe-----EEE--EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecC-Cccee
Q 024185 158 N-NIYVLDAY---GGE-----KRC--GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG-NIGVV 225 (271)
Q Consensus 158 ~-~i~~~d~~---~~~-----~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v 225 (271)
+ .+..++.. .+. ... ...++.. ....++++++|+++++...++.|.+||..+++....... +...+
T Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g--~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p 293 (343)
T 2qe8_A 216 STSMYRIKSADLSNLQLTDAELGSKIERYSEKP--ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWT 293 (343)
T ss_dssp CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC--SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCE
T ss_pred CCeEEEEEHHHhcCCCCChhhhhcceEecccCC--CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecC
Confidence 5 55555532 111 000 0111111 245699999999999988899999999856664333322 24467
Q ss_pred EEEEEecCCcEEEEeC
Q 024185 226 ACLKWAPRRAMFVAAS 241 (271)
Q Consensus 226 ~~~~~s~~~~~l~~~~ 241 (271)
.+++|.++++++++.+
T Consensus 294 ~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 294 DSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EEEEECTTSCEEEEEC
T ss_pred CeeEECCCCcEEEEeC
Confidence 8999999998888776
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.6e-10 Score=84.49 Aligned_cols=192 Identities=10% Similarity=0.079 Sum_probs=132.5
Q ss_pred EEEEEcccccce-EEeeEEecCCchhhhhhhhhhccCc--eEEEEEecCcceeEEEecCCcc-eEEEcCCCCEEEEE-ec
Q 024185 36 MIIEFFATSKGI-RRGLFLSACLQLMIALCLVLLTTAL--EYGIFVLMLASFQGILRLRGRP-TVAFDQQGLVFAVA-ME 110 (271)
Q Consensus 36 ~~~~~~~~~~~~-v~~~~~s~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~-~~ 110 (271)
..++.+.+...+ ...+.++ ++.. +.+.+.+| .|+.+|+++++.++.+...... ...+.++++.|+.. -.
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~L-----yestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~ 105 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGYF-----YESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK 105 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTEE-----EEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS
T ss_pred EEEEEecCCCCcccceEEEE-CCEE-----EEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee
Confidence 445556443333 4678888 5654 55667665 8999999999999888765432 23344456566655 45
Q ss_pred CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC---CceeeEE
Q 024185 111 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---NTNTEAT 187 (271)
Q Consensus 111 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~ 187 (271)
++.+.+||.++.+. ...+...+ ....+++|++.|+.+..++.|.++|..+.+.+.++...... ..++.+.
T Consensus 106 ~~~v~v~D~~t~~~--~~ti~~~~-----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 106 NGLGFVWNIRNLRQ--VRSFNYDG-----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp SSEEEEEETTTCCE--EEEEECSS-----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred CCEEEEEECccCcE--EEEEECCC-----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 78999999999876 44444433 22334467787877777889999999999988887654321 2245577
Q ss_pred ECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC------------cceeEEEEEecCCcEEEEeC
Q 024185 188 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN------------IGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 188 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~ 241 (271)
|. +|+..+..-.++.|.+.|.++++.+..+... ....+.++|+|+++.|...+
T Consensus 179 ~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 179 WV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 76 7776666666889999999999998887432 12458999999877666665
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.4e-10 Score=96.77 Aligned_cols=234 Identities=11% Similarity=0.069 Sum_probs=150.3
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccc--cceEEeeEEec---CCchhhhhhhhhhc-----cCceEEEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATS--KGIRRGLFLSA---CLQLMIALCLVLLT-----TALEYGIFVLML 81 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~---~~~~~~~~~l~s~~-----~dg~i~iwd~~~ 81 (271)
..++++..++.+..++..+|...-. +... ......+..+| ++.. ++..+ .+|.|+.||.++
T Consensus 122 g~v~v~~~dg~l~AlDa~TG~~~W~----~~~~~~~~~~~~~~~sP~v~~g~v-----~vg~~~~~~~~~g~v~a~D~~t 192 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTGQRAWS----VDTRADHKRSYTITGAPRVVNGKV-----VIGNGGAEFGVRGYVTAYDAET 192 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEE----EECCSCTTSCCBCCSCCEEETTEE-----EECCBCTTTCCBCEEEEEETTT
T ss_pred CEEEEEccCCEEEEEECCCCCEeee----ecCcCCCCCCccccCCcEEECCEE-----EEEeCCCccCCCCEEEEEECCC
Confidence 4566667788899999887743222 2211 11001111112 4443 22221 479999999999
Q ss_pred cceeEEEecC--------------------------------Cc-ceEEEcCCCCEEEEEecCCe---------------
Q 024185 82 ASFQGILRLR--------------------------------GR-PTVAFDQQGLVFAVAMEAGA--------------- 113 (271)
Q Consensus 82 ~~~~~~~~~~--------------------------------~~-~~~~~~~~~~~l~~~~~d~~--------------- 113 (271)
|+.+..+... .. ..++++|+...++.+..++.
T Consensus 193 G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~ 272 (689)
T 1yiq_A 193 GKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNL 272 (689)
T ss_dssp CCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCT
T ss_pred CcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCce
Confidence 9988776521 01 13788998899999887763
Q ss_pred ----EEEEeCCCCCCCcceEEEecC--Cc-------cceEEEEEcCCCc---EEEEEecCCeEEEEECCCCeEEEEeecC
Q 024185 114 ----IKLFDSRSYDKGPFDTFLVGG--DT-------AEVCDIKFSNDGK---SMLLTTTNNNIYVLDAYGGEKRCGFSLE 177 (271)
Q Consensus 114 ----i~i~d~~~~~~~~~~~~~~~~--~~-------~~v~~~~~s~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 177 (271)
|..+|.++++. ...+.. |. .+........+|+ .++.++.+|.++++|.++|+.+......
T Consensus 273 y~~~v~AlD~~TG~~----~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~ 348 (689)
T 1yiq_A 273 FLSSIVAVNADTGEY----VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIV 348 (689)
T ss_dssp TTTEEEEEETTTCCE----EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred eeeeEEEEEccCCce----eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccc
Confidence 99999999986 443322 21 1122222233565 7888999999999999999987543221
Q ss_pred CC-------------------------------------CCceeeEEECCCCCEEEEecC--------------------
Q 024185 178 PS-------------------------------------PNTNTEATFTPDGQYVVSGSG-------------------- 200 (271)
Q Consensus 178 ~~-------------------------------------~~~v~~~~~~~~~~~l~~~~~-------------------- 200 (271)
.. ...-..++++|+..++++...
T Consensus 349 ~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~ 428 (689)
T 1yiq_A 349 PQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKS 428 (689)
T ss_dssp CCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTT
T ss_pred ccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccc
Confidence 10 000123688898887776421
Q ss_pred -------------------------CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 201 -------------------------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 201 -------------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
+|.|..||+.+++.+..++.+. +...-.++..+.+++.++ +.++.||.++++
T Consensus 429 ~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 429 MYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp SCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 3779999999999988876543 233345666777888877 889999999998
Q ss_pred CCcCCC
Q 024185 254 NSTDES 259 (271)
Q Consensus 254 ~~~~~~ 259 (271)
.+-..+
T Consensus 508 ~lw~~~ 513 (689)
T 1yiq_A 508 KLWEQP 513 (689)
T ss_dssp EEEEEE
T ss_pred cceeee
Confidence 875443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.4e-10 Score=90.01 Aligned_cols=189 Identities=10% Similarity=0.085 Sum_probs=128.9
Q ss_pred cCCchhhhhhhhhhccCceEEEEEecCc----ceeEEEecC------C---cceEEEcCCCCEEEEEecC------CeEE
Q 024185 55 ACLQLMIALCLVLLTTALEYGIFVLMLA----SFQGILRLR------G---RPTVAFDQQGLVFAVAMEA------GAIK 115 (271)
Q Consensus 55 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~------~---~~~~~~~~~~~~l~~~~~d------~~i~ 115 (271)
++++++ ++++..+++|+++|+.+. +..++++.. + ...+...|+| .++++..+ |.+.
T Consensus 93 ~~r~~l----~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 93 IERRFL----IVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGIL 167 (462)
T ss_dssp CCSCEE----EEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEE
T ss_pred ccCCEE----EEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEE
Confidence 677775 458888999999999755 556666311 1 1226788999 66665444 7899
Q ss_pred EEeCCCCCCCcceEEEecCCc-cceEEEEEcCCCcEEEEEe-------------------cCCeEEEEECCCCeEEEEee
Q 024185 116 LFDSRSYDKGPFDTFLVGGDT-AEVCDIKFSNDGKSMLLTT-------------------TNNNIYVLDAYGGEKRCGFS 175 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~-------------------~d~~i~~~d~~~~~~~~~~~ 175 (271)
++|.++.+. .......... .--..+-|+|+++.+++.. ...+|.+||+.+++.+.++.
T Consensus 168 vlD~~T~~v--~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 168 MLDHYSFEP--LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EECTTTCCE--EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEECCCCeE--EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 999998885 2222222222 2234688999999888874 36899999999998888877
Q ss_pred cCCCCCceeeEEE--CCCCCEEEEecC------CCcEEEEEcCCcee--EEE--ecCC----------------cceeEE
Q 024185 176 LEPSPNTNTEATF--TPDGQYVVSGSG------DGTLHAWNINTRNE--VAC--WNGN----------------IGVVAC 227 (271)
Q Consensus 176 ~~~~~~~v~~~~~--~~~~~~l~~~~~------dg~i~iwd~~~~~~--~~~--~~~~----------------~~~v~~ 227 (271)
..........+.| +|++++++++++ +++|.+|....++. .+. +... ......
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 6422222444555 999999888774 56787776654432 111 1110 134678
Q ss_pred EEEecCCcEEEEeC---CeEEEEcCC
Q 024185 228 LKWAPRRAMFVAAS---SVLSFWIPN 250 (271)
Q Consensus 228 ~~~s~~~~~l~~~~---~~v~iw~~~ 250 (271)
+.+||||++|.++. +.|.+||+.
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECS
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEec
Confidence 99999999998886 789999985
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.4e-10 Score=94.67 Aligned_cols=179 Identities=12% Similarity=0.002 Sum_probs=124.2
Q ss_pred ccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEEecCC-----------------------------------
Q 024185 69 TTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVAMEAG----------------------------------- 112 (271)
Q Consensus 69 ~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~----------------------------------- 112 (271)
..++.+.+.|.++.+...++...+ ..-++++|+|+++++.+.+.
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~ 251 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 251 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred ccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence 457789999999999888887543 33499999999999887543
Q ss_pred ---eEEEEeCCC--CCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CCeEEEEECCCCe------------EEEEe
Q 024185 113 ---AIKLFDSRS--YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGE------------KRCGF 174 (271)
Q Consensus 113 ---~i~i~d~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~------------~~~~~ 174 (271)
.|.+.|..+ ++. ....... .....++.++|||+++++++. +.+|.++|+.+.+ .....
T Consensus 252 ~i~~V~VID~~~~~~~~-~~~~Ipv---g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v 327 (595)
T 1fwx_A 252 ELNGVKVVDGRKEASSL-FTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP 327 (595)
T ss_dssp EETTEEEEECSGGGCCS-SEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC
T ss_pred EECcEEEEeCcccCCce-eEEEEec---CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc
Confidence 366677765 221 0112221 235678899999999887765 7899999998653 23333
Q ss_pred ecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC----------ceeEEEecCCccee-----EEEEEecCCcEEEE
Q 024185 175 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT----------RNEVACWNGNIGVV-----ACLKWAPRRAMFVA 239 (271)
Q Consensus 175 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~ 239 (271)
.... ....++|+|+|...++...|+.|.+||+.+ .+.+.++..|..+- .++..+|||++|++
T Consensus 328 ~vG~---gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~ 404 (595)
T 1fwx_A 328 ELGL---GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC 404 (595)
T ss_dssp BCCS---CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred CCCC---CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEE
Confidence 3222 367799999994334555689999999977 56677776654321 23356899999999
Q ss_pred eC----CeE-----------EEEcCCCCCC
Q 024185 240 AS----SVL-----------SFWIPNPSSN 254 (271)
Q Consensus 240 ~~----~~v-----------~iw~~~~~~~ 254 (271)
+. ..+ .++|+.+++.
T Consensus 405 ~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 405 LSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp EESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred cCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 86 234 8899976654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.8e-10 Score=96.53 Aligned_cols=226 Identities=11% Similarity=0.042 Sum_probs=137.9
Q ss_pred ecceeEEeeec-----ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccC------------
Q 024185 9 PITQALLFARQ-----NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTA------------ 71 (271)
Q Consensus 9 ~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~d------------ 71 (271)
|..+.++++.+ ...+..++..++..... .+. ......++|+ |++. |+.++.+
T Consensus 138 pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~---~~~--~~k~~~~~Ws-Dg~~-----l~y~~~~~~~~~~~~~~~~ 206 (693)
T 3iuj_A 138 RDGRILAYSLSLAGSDWREIHLMDVESKQPLET---PLK--DVKFSGISWL-GNEG-----FFYSSYDKPDGSELSARTD 206 (693)
T ss_dssp TTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE---EEE--EEESCCCEEE-TTTE-----EEEEESSCCC-------CC
T ss_pred CCCCEEEEEEecCCCceEEEEEEECCCCCCCcc---ccC--CceeccEEEe-CCCE-----EEEEEecCcccccccccCC
Confidence 33455666542 13556666655532111 111 1113467899 9987 4444544
Q ss_pred -ceEEEEEecCcce--eEEEec---CC--cceEEEcCCCCEEEEEec----CCeEEEEeCCCCCCCcceEEEecCCccce
Q 024185 72 -LEYGIFVLMLASF--QGILRL---RG--RPTVAFDQQGLVFAVAME----AGAIKLFDSRSYDKGPFDTFLVGGDTAEV 139 (271)
Q Consensus 72 -g~i~iwd~~~~~~--~~~~~~---~~--~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~v 139 (271)
..|++|++.++.. ...+.. +. ...+.|+|||++|+.... .+.|+++|+.++... ...+..+....
T Consensus 207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~---~~~l~~~~~~~ 283 (693)
T 3iuj_A 207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP---LLTVQGDLDAD 283 (693)
T ss_dssp CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC---CEEEECSSSSC
T ss_pred CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc---eEEEeCCCCce
Confidence 3499999877653 233332 22 234889999998876543 248999999876421 22333455555
Q ss_pred EEEEEcCCCcEEEEEec----CCeEEEEECCCCeE--EEEeecCCCCCceeeEEECCCCCEEEEecCC-C--cEEEEEcC
Q 024185 140 CDIKFSNDGKSMLLTTT----NNNIYVLDAYGGEK--RCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-G--TLHAWNIN 210 (271)
Q Consensus 140 ~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~ 210 (271)
... |+++|..|+..+. .+.|..+|+.+++. ...+..+... +. .|++++++|+....+ + .|++||+.
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~--~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ--VL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS--CE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC--EE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 554 6676666655543 36899999987654 2345444443 43 889999988876654 3 68999987
Q ss_pred CceeEEEec-CCcceeEEEEEecCCcEEEEe--C----CeEEEEcCCCCCC
Q 024185 211 TRNEVACWN-GNIGVVACLKWAPRRAMFVAA--S----SVLSFWIPNPSSN 254 (271)
Q Consensus 211 ~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~--~----~~v~iw~~~~~~~ 254 (271)
.+. ...+. ...+.+..+.++|++..++.. + +++..||+.+++.
T Consensus 359 g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 359 GKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp SCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 544 44443 344567788888888755433 3 6799999987754
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-09 Score=86.34 Aligned_cols=170 Identities=10% Similarity=-0.010 Sum_probs=117.0
Q ss_pred eEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEe----------cCCeEEEEeCCCCCCCcceEEEec--CC---cc
Q 024185 73 EYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAM----------EAGAIKLFDSRSYDKGPFDTFLVG--GD---TA 137 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~--~~---~~ 137 (271)
.|.++|..+++.+..++....+.++++||+++++++. .++.|.+||..+.+. .....+. .+ ..
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~--~~~i~~~~~~~~~~g~ 125 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP--IADIELPDAPRFDVGP 125 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE--EEEEECCCccccccCC
Confidence 8899999999988888765555899999999999886 367899999987664 2232222 00 12
Q ss_pred ceEEEEEcCCCcEEEEEec--CCeEEEEECCCCeEEEE-eecCCCCCceeeEEECCCCC-EEEEecCCCcEEEEEcCCce
Q 024185 138 EVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCG-FSLEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTRN 213 (271)
Q Consensus 138 ~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 213 (271)
....++|+|||++|++++. ++.|.++| .+++.+.. +.... ++.+.|+++ .+++.+.||.+.++|. +++
T Consensus 126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~ 197 (373)
T 2mad_H 126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT------CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG 197 (373)
T ss_pred CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc------eEEEEeCCCceEEEEcCCCCEEEEEC-CCc
Confidence 3458899999999999874 57899999 99988777 54322 144556653 4556677999999999 877
Q ss_pred eEEEec-----CCcce-eEEEEEecCCcE-EEEeC-CeEEEEcCCCC
Q 024185 214 EVACWN-----GNIGV-VACLKWAPRRAM-FVAAS-SVLSFWIPNPS 252 (271)
Q Consensus 214 ~~~~~~-----~~~~~-v~~~~~s~~~~~-l~~~~-~~v~iw~~~~~ 252 (271)
...... ....+ .....+.+++.. ++... +.+.+.|+.+.
T Consensus 198 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 198 AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred EEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence 764321 11111 133456666543 33333 78888888654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.5e-10 Score=90.33 Aligned_cols=199 Identities=8% Similarity=0.018 Sum_probs=126.1
Q ss_pred ceEEeeEEecCCchhhhhhhhhhc--cCceEEEEEecCcceeEEEec---------CCcceEEEcCCCCEEEEEec----
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLT--TALEYGIFVLMLASFQGILRL---------RGRPTVAFDQQGLVFAVAME---- 110 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~---- 110 (271)
.....++++|+|+. +++.. .++.++||.+.+++ +..+.. ..+..++++++++++++-..
T Consensus 17 ~~p~~va~~~~g~~-----~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~ 90 (343)
T 2qe8_A 17 LAPGNITLTPDGRL-----FLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSK 90 (343)
T ss_dssp SCEEEEEECTTSCE-----EEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHT
T ss_pred CCcceEEECCCCCE-----EEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcC
Confidence 56677999999987 44532 23436677766554 332321 12455999999886555443
Q ss_pred -CCeEEEEeCCCCCCCcceEEEec----CCccceEEEEEcCCCcEE-EEEe---cCCeEEEEECCCCeEEEEeecCCC--
Q 024185 111 -AGAIKLFDSRSYDKGPFDTFLVG----GDTAEVCDIKFSNDGKSM-LLTT---TNNNIYVLDAYGGEKRCGFSLEPS-- 179 (271)
Q Consensus 111 -d~~i~i~d~~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l-~~~~---~d~~i~~~d~~~~~~~~~~~~~~~-- 179 (271)
++.|.+||+.+++. .....+. .+......++++|++..+ ++-. .++.|.+||+.+++..+.+..+..
T Consensus 91 ~~~~i~~~d~~tg~~--~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~ 168 (343)
T 2qe8_A 91 SVPKLVAWDTLNNQL--SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA 168 (343)
T ss_dssp SCCEEEEEETTTTEE--EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred CCCeEEEEECCCCeE--EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc
Confidence 57899999988764 2233332 122356899999865444 4444 578999999988876665533110
Q ss_pred -------------------------CCceeeEEECCCCCEEEEecCCC-cEEEEEcC---Cce-----e---EEEecCCc
Q 024185 180 -------------------------PNTNTEATFTPDGQYVVSGSGDG-TLHAWNIN---TRN-----E---VACWNGNI 222 (271)
Q Consensus 180 -------------------------~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~---~~~-----~---~~~~~~~~ 222 (271)
...+..++|+|||+.|+.+..++ .+..++.. .+. . +. ..++.
T Consensus 169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~ 247 (343)
T 2qe8_A 169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEK 247 (343)
T ss_dssp CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEEC
T ss_pred ccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccC
Confidence 01257799999999888877655 55555532 110 0 11 11233
Q ss_pred ceeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 223 GVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
+....++++++|+++++.. +.|.+||.++++
T Consensus 248 g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 248 PICDGISIDKDHNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred CCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence 3456799999999888776 789999985454
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-09 Score=80.90 Aligned_cols=191 Identities=9% Similarity=0.011 Sum_probs=129.6
Q ss_pred EEEEEcccccce-EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCc-ceEEEcCCCCEEEEE-ecCC
Q 024185 36 MIIEFFATSKGI-RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGR-PTVAFDQQGLVFAVA-MEAG 112 (271)
Q Consensus 36 ~~~~~~~~~~~~-v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~d~ 112 (271)
..++.+.+.... ...+.++. +.. +.+.+.+|.|+.+|+++++.++.+ .... ......++++.|+.. -.++
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~L-----y~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~ 116 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GHF-----FESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEG 116 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEE-----EEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSC
T ss_pred EEEEEEcCCCccccceEEEEC-CEE-----EEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCC
Confidence 344555443333 46788874 444 568888889999999999988887 4432 222233345444444 5678
Q ss_pred eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC---CceeeEEEC
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---NTNTEATFT 189 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~~ 189 (271)
.+.+||.++.+. +..+...++ -. .+++|++.|+.+..++.|.++|..+.+.+.++.....+ ..++.+.|.
T Consensus 117 ~v~V~D~~Tl~~--~~ti~~~~e---Gw--GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~ 189 (268)
T 3nok_A 117 LLFTWSGMPPQR--ERTTRYSGE---GW--GLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA 189 (268)
T ss_dssp EEEEEETTTTEE--EEEEECSSC---CC--CEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred EEEEEECCcCcE--EEEEeCCCc---ee--EEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe
Confidence 999999998875 334443322 12 33367888888877999999999999988887654432 234567776
Q ss_pred CCCCEEEEecCCCcEEEEEcCCceeEEEecCC-------------cceeEEEEEecCCcEEEEeC
Q 024185 190 PDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-------------IGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 190 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~ 241 (271)
+|+..+..-.++.|.+.|.++++.+..+... ....+.++|+|+++.|+..+
T Consensus 190 -dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 190 -NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp -TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred -CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 7776666656889999999999998877432 12468999999766554444
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-09 Score=85.19 Aligned_cols=216 Identities=12% Similarity=0.077 Sum_probs=142.0
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
...+.++..++.+..++.. +.. ...+......+..+...+++.. ..++.++.+..+|.+ ++....+..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~----~~~~~~~~~~~~~~~~~~~g~l------~vgt~~~~l~~~d~~-g~~~~~~~~ 174 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTE----KWRFKTKKAIYATPIVSEDGTI------YVGSNDNYLYAINPD-GTEKWRFKT 174 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCE----EEEEECSSCCCSCCEECTTSCE------EEECTTSEEEEECTT-SCEEEEEEC
T ss_pred CCEEEEEecCCEEEEEcCC-CCE----EEEEcCCCceeeeeEEcCCCEE------EEEcCCCEEEEECCC-CCEeEEEec
Confidence 4556666667778887765 421 1123334444555666667764 356778899999998 776666654
Q ss_pred C--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC
Q 024185 91 R--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 168 (271)
Q Consensus 91 ~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 168 (271)
. ....+...+++.. ..++ +.+..+| .+++. ..........+.++...++|. +..++.++.+..+| .++
T Consensus 175 ~~~~~~~~~~d~~g~l-~v~t--~~l~~~d-~~g~~----~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g 244 (330)
T 3hxj_A 175 NDAITSAASIGKDGTI-YFGS--DKVYAIN-PDGTE----KWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDG 244 (330)
T ss_dssp SSCCCSCCEECTTCCE-EEES--SSEEEEC-TTSCE----EEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTS
T ss_pred CCCceeeeEEcCCCEE-EEEe--CEEEEEC-CCCcE----EEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCC
Confidence 3 3445677777774 4444 7899999 55553 444444456688888888875 66677788899898 456
Q ss_pred eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEE
Q 024185 169 EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFW 247 (271)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw 247 (271)
+.+..+...... +..+...++++ +..++.+|.+..+|. +++.+..+......+.++...++|++.+.+. |.+++.
T Consensus 245 ~~~~~~~~~~~~--~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 245 TEKWRFKTGKRI--ESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYAL 320 (330)
T ss_dssp CEEEEEECSSCC--CSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEE
T ss_pred CEeEEeeCCCCc--cccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEE
Confidence 666665543332 34466666665 566777888999996 7777776665556677888888888777666 878887
Q ss_pred cCCCC
Q 024185 248 IPNPS 252 (271)
Q Consensus 248 ~~~~~ 252 (271)
..+..
T Consensus 321 ~~~~~ 325 (330)
T 3hxj_A 321 FNLEH 325 (330)
T ss_dssp EC---
T ss_pred ecccc
Confidence 65543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-07 Score=72.61 Aligned_cols=201 Identities=11% Similarity=0.007 Sum_probs=126.7
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec--CCcceEEEcCCCCEEEEE-ecCCeEEEEeCCCC
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL--RGRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSY 122 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~ 122 (271)
.....+++++++..+ +++-...+.|..++.+.+.....+.. .....+++++++..|+.+ ..++.|.+++....
T Consensus 36 ~~~~gi~~d~~~~~l----y~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVV----YWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEE----EEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEE----EEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence 456789999976653 34556678999999976654433332 234569999987666655 45679999998754
Q ss_pred CCCcceEEEecCCccceEEEEEcCCCcEEEEEec---CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEe-
Q 024185 123 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG- 198 (271)
Q Consensus 123 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 198 (271)
.. .............++++|++..|+.+.. .+.|..+++... ....+.. ........++++|++..|+.+
T Consensus 112 ~~----~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~-~~~~~P~gia~d~~~~~lyv~d 185 (267)
T 1npe_A 112 QR----RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQ-DNLGLPNGLTFDAFSSQLCWVD 185 (267)
T ss_dssp SC----EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEEC-TTCSCEEEEEEETTTTEEEEEE
T ss_pred CE----EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEE-CCCCCCcEEEEcCCCCEEEEEE
Confidence 42 2222222245789999997666665553 468888887533 2233321 111346789999987766555
Q ss_pred cCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCC
Q 024185 199 SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 199 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~ 258 (271)
...+.|..+|+........+... .....++.. ++.++++.. +.|..+|..+++.....
T Consensus 186 ~~~~~I~~~~~~g~~~~~~~~~~-~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 186 AGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp TTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEecCCCceEEEecCC-CCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence 44679999999755443333332 223566654 344444432 78999999888765544
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-08 Score=76.27 Aligned_cols=192 Identities=9% Similarity=0.041 Sum_probs=129.6
Q ss_pred EEEEEccccc-ceEEeeEEecCCchhhhhhhhhhccC--ceEEEEEecCcceeEEEecCCc-ceEEEcCCCCEEEEE-ec
Q 024185 36 MIIEFFATSK-GIRRGLFLSACLQLMIALCLVLLTTA--LEYGIFVLMLASFQGILRLRGR-PTVAFDQQGLVFAVA-ME 110 (271)
Q Consensus 36 ~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~ 110 (271)
..++.+.+.. .-...+.|++ +.. +.+.+.+ ..|+.+|+++++.++.+..... ......++++.|+.. -.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~L-----yestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~ 83 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHL-----YESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR 83 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEE-----EEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS
T ss_pred EEEEEcCCCCccccccEEEEC-CEE-----EEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee
Confidence 4445553333 3456788887 444 4466665 4899999999999988876543 223233345555544 56
Q ss_pred CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC---CceeeEE
Q 024185 111 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---NTNTEAT 187 (271)
Q Consensus 111 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~ 187 (271)
++.+.+||.++.+. ...+...++ - ..+.++++.|+.+..++.|.++|..+.+.+.++.....+ ..++.+.
T Consensus 84 ~~~v~v~D~~tl~~--~~ti~~~~~---G--wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 84 NHEGFVYDLATLTP--RARFRYPGE---G--WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp SSEEEEEETTTTEE--EEEEECSSC---C--CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred CCEEEEEECCcCcE--EEEEeCCCC---c--eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 88999999998775 344444322 1 233467777877777899999999999988887654322 2345566
Q ss_pred ECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC-------------cceeEEEEEecCCcEEEEeC
Q 024185 188 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-------------IGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 188 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~ 241 (271)
+. +|+..+..-.+..|.+.|.++++.+..+... ....+.++++|+++.|...+
T Consensus 157 ~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 157 WV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred Ee-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 65 6776666656789999999999998887421 12468999999877665555
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.21 E-value=8.9e-10 Score=89.77 Aligned_cols=163 Identities=16% Similarity=0.092 Sum_probs=106.2
Q ss_pred EeeEEecCCchhhhhhhhhhc-cCceEEEEEecCcceeEEEecCCc---------ceEEEcCCCCEEEEE----------
Q 024185 49 RGLFLSACLQLMIALCLVLLT-TALEYGIFVLMLASFQGILRLRGR---------PTVAFDQQGLVFAVA---------- 108 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~---------- 108 (271)
..+.++|+|+++++ +.. .++.|.+.|+.+++.+..+...+. ..++++++|++++..
T Consensus 180 ~~~~~spDGk~lyV----~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLF----YQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEE----EECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEE----EecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 45889999998432 322 368899999999988877765321 113444444443333
Q ss_pred ---------------------------ecCCeEEEEeCCCCCCCcceEEEecC--------CccceEEEEEcCCCcEEEE
Q 024185 109 ---------------------------MEAGAIKLFDSRSYDKGPFDTFLVGG--------DTAEVCDIKFSNDGKSMLL 153 (271)
Q Consensus 109 ---------------------------~~d~~i~i~d~~~~~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~ 153 (271)
+..+.+.+.|...........+.+.. .......++++|+++++++
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 33344444444332210000111000 0111223689999888877
Q ss_pred Eec----------CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC-EEEEec-CCCcEEEEEcCCceeEEEe
Q 024185 154 TTT----------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVSGS-GDGTLHAWNINTRNEVACW 218 (271)
Q Consensus 154 ~~~----------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~ 218 (271)
... ++.|.++|+.+.+.+.++..... ...+.|+|||+ ++++.. .++.|.++|+.+++.+.++
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~---P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE---IDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE---ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEECCCC---cCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 653 35799999999999998875543 66799999999 888887 4899999999999999987
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-09 Score=85.25 Aligned_cols=212 Identities=12% Similarity=0.099 Sum_probs=139.7
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
...+.++..++.+..++ ..+. ....+......+..+...+++.. ..++.+ +..+|. +++.+..+..
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g~----~~~~~~~~~~~~~~~~~~~~g~l------~v~t~~--l~~~d~-~g~~~~~~~~ 95 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDGS----VKWFFKSGEIIECRPSIGKDGTI------YFGSDK--VYAINP-DGTEKWRFDT 95 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTSC----EEESSCGGGEEEECCEETTTTEE------CCSSCE--EEEECC-CGGGGGGSCC
T ss_pred CCeEEEEcCCCEEEEEC-CCCc----EEEEEecCCCcccceEEecCCcE------EEecCc--EEEECC-CCcEEEEEEC
Confidence 34566666677888888 5552 22224444455667777777775 233434 888886 5654443332
Q ss_pred CC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC
Q 024185 91 RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 168 (271)
Q Consensus 91 ~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 168 (271)
.. .....+. +..+.+++.++.+..+|.. ++. ......+...+.++...+++. ++.++.++.+..+|.. +
T Consensus 96 ~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~----~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g 166 (330)
T 3hxj_A 96 KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE----KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-G 166 (330)
T ss_dssp -----CCEEEE--TTEEEEECTTSEEEEECTT-SCE----EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-S
T ss_pred CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE----EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-C
Confidence 22 2223333 5567888888999999988 553 333334445566777777776 6677888999999988 7
Q ss_pred eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEE
Q 024185 169 EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFW 247 (271)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw 247 (271)
+....+...... +.++...+++...+.. +.+..+| .+++.+.........+.++...++|.+.+... +.+..+
T Consensus 167 ~~~~~~~~~~~~--~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~ 240 (330)
T 3hxj_A 167 TEKWRFKTNDAI--TSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAI 240 (330)
T ss_dssp CEEEEEECSSCC--CSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEE
T ss_pred CEeEEEecCCCc--eeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEE
Confidence 777666544333 6667888888755544 7899999 78887777765556688888888888777665 778888
Q ss_pred cCCC
Q 024185 248 IPNP 251 (271)
Q Consensus 248 ~~~~ 251 (271)
|...
T Consensus 241 ~~~g 244 (330)
T 3hxj_A 241 NPDG 244 (330)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 7543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.15 E-value=9.9e-09 Score=89.35 Aligned_cols=161 Identities=12% Similarity=0.126 Sum_probs=110.8
Q ss_pred eEEEEEecCcceeEEEecC--C-----c---ce-EEEcCCCC---EEEEEecCCeEEEEeCCCCCCCcceEEEecC----
Q 024185 73 EYGIFVLMLASFQGILRLR--G-----R---PT-VAFDQQGL---VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG---- 134 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~~--~-----~---~~-~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---- 134 (271)
.|..+|.++|+.+..++.. . . .. .....+|+ .++.++.+|.++++|.++++. +....+..
T Consensus 276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~--l~~~~~~~~~w~ 353 (689)
T 1yiq_A 276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL--LSAKGIVPQSWT 353 (689)
T ss_dssp EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE--EEEEESSCCSSE
T ss_pred eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE--eccccccccccc
Confidence 4999999999998887642 1 1 11 22223564 788889999999999999885 11111100
Q ss_pred ----------------------Ccc-----------ceEEEEEcCCCcEEEEEec-------------------------
Q 024185 135 ----------------------DTA-----------EVCDIKFSNDGKSMLLTTT------------------------- 156 (271)
Q Consensus 135 ----------------------~~~-----------~v~~~~~s~~~~~l~~~~~------------------------- 156 (271)
... .-..++++|+..++++...
T Consensus 354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g 433 (689)
T 1yiq_A 354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG 433 (689)
T ss_dssp EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence 000 0123688998887776532
Q ss_pred --------------------CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE
Q 024185 157 --------------------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 216 (271)
Q Consensus 157 --------------------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 216 (271)
+|.|..||+.+++.+..+..+.. .....+...+..++.++.||.++.||.++|+.+.
T Consensus 434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw 510 (689)
T 1yiq_A 434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI---FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW 510 (689)
T ss_dssp SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC---ccCccceECCCEEEEECCCCcEEEEECCCCccce
Confidence 37899999999999888776543 2223556677899999999999999999999998
Q ss_pred EecCCcce-eEEEEEecCCcEEE
Q 024185 217 CWNGNIGV-VACLKWAPRRAMFV 238 (271)
Q Consensus 217 ~~~~~~~~-v~~~~~s~~~~~l~ 238 (271)
+++...+. ..-+.|..+|+..+
T Consensus 511 ~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 511 EQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEECSSCCCSCCEEEEETTEEEE
T ss_pred eeeCCCCcccCceEEEECCEEEE
Confidence 88654332 24567788888443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=8.6e-09 Score=89.55 Aligned_cols=161 Identities=14% Similarity=0.091 Sum_probs=112.5
Q ss_pred eEEEEEecCcceeEEEecC--C--------cce-EEEcCCC---CEEEEEecCCeEEEEeCCCCCCCcceEEEecC----
Q 024185 73 EYGIFVLMLASFQGILRLR--G--------RPT-VAFDQQG---LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG---- 134 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~~--~--------~~~-~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---- 134 (271)
.|..+|.++|+.+..++.. . .+. +....+| +.++.++.+|.++++|.++++. +....+..
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~--l~~~~~~~~~~~ 361 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF--ISAKNFVPVNWA 361 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE--EEEEESSCCSSE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE--eccccccccCcc
Confidence 5999999999988887642 1 112 3334477 6788899999999999999885 21111110
Q ss_pred -----Cccce------------------------EEEEEcCCCcEEEEEecC----------------------------
Q 024185 135 -----DTAEV------------------------CDIKFSNDGKSMLLTTTN---------------------------- 157 (271)
Q Consensus 135 -----~~~~v------------------------~~~~~s~~~~~l~~~~~d---------------------------- 157 (271)
...++ ..++++|++.++++...+
T Consensus 362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 441 (677)
T 1kb0_A 362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN 441 (677)
T ss_dssp EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence 00001 256889988888776432
Q ss_pred ---------------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc
Q 024185 158 ---------------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI 222 (271)
Q Consensus 158 ---------------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 222 (271)
+.|..||+.+++.+..+..... .....+.+++..++.++.||.+++||.++++.+..+....
T Consensus 442 ~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~---~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 442 TAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSP---WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp CCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cccccccccCCCCCccEEEEEeCCCCcEEeecCCCCC---CcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 7899999999999888764432 3334566778888999999999999999999999886433
Q ss_pred -ceeEEEEEecCCcEEE
Q 024185 223 -GVVACLKWAPRRAMFV 238 (271)
Q Consensus 223 -~~v~~~~~s~~~~~l~ 238 (271)
....-+.|.++|+.++
T Consensus 519 ~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 519 GVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp CCCSCCEEEEETTEEEE
T ss_pred CcccCCEEEEeCCEEEE
Confidence 2234466778887444
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-09 Score=88.81 Aligned_cols=188 Identities=12% Similarity=0.055 Sum_probs=132.3
Q ss_pred eeEEec-----CCchhhhhhhhhhccCceEEEEEecCcceeEEEec---CCcceEEE-c-CCCCEEEEEe----------
Q 024185 50 GLFLSA-----CLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL---RGRPTVAF-D-QQGLVFAVAM---------- 109 (271)
Q Consensus 50 ~~~~s~-----~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~-~-~~~~~l~~~~---------- 109 (271)
...+|. ||+++ ++....++.|.+.|+++.+..+.+.. .+...+++ + |+++++++++
T Consensus 89 h~~~s~t~g~~DG~~l----fVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg 164 (595)
T 1fwx_A 89 HVHMSFTEGKYDGRFL----FMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG 164 (595)
T ss_dssp CEEEEEETTEEEEEEE----EEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred ccccCCCCCCcCCCEE----EEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCC
Confidence 355555 77775 44667788899999999998885543 33445777 5 9999998885
Q ss_pred --------cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC-----------------------
Q 024185 110 --------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN----------------------- 158 (271)
Q Consensus 110 --------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----------------------- 158 (271)
.++.+.+.|.++.+. .......+ ....++++|+|+++++++.+.
T Consensus 165 ~~l~~~~~~~~~vtvID~~t~~v--~~qI~Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~ 239 (595)
T 1fwx_A 165 TNMEDVANYVNVFTAVDADKWEV--AWQVLVSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA 239 (595)
T ss_dssp SSTTCGGGEEEEEEEEETTTTEE--EEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH
T ss_pred cccccccccCceEEEEECCCCeE--EEEEEeCC---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecc
Confidence 245799999998764 22222322 345678999999999888542
Q ss_pred ---------------eEEEEECCC--CeE-EEEeecCCCCCceeeEEECCCCCEEEEecC-CCcEEEEEcCCce------
Q 024185 159 ---------------NIYVLDAYG--GEK-RCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINTRN------ 213 (271)
Q Consensus 159 ---------------~i~~~d~~~--~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~------ 213 (271)
.|.+.|.++ ++. +..+..... ..++.++|||+++++++. +.+|.++|+.+.+
T Consensus 240 ~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~---PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~ 316 (595)
T 1fwx_A 240 EIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANN---PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN 316 (595)
T ss_dssp HHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESS---CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC
T ss_pred ceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCC---ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccc
Confidence 477777776 444 455544333 455999999998887665 7899999998653
Q ss_pred ------eEEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCC
Q 024185 214 ------EVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNP 251 (271)
Q Consensus 214 ------~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~ 251 (271)
.....+. ......++|+|+| .+.+.. ++|.+||++.
T Consensus 317 l~~~~~v~~~v~v-G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 317 ADPRSAVVAEPEL-GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CCGGGGEEECCBC-CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred cCcccceEEEcCC-CCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 3344432 3346899999999 555543 8899999876
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.11 E-value=8.4e-08 Score=77.38 Aligned_cols=171 Identities=17% Similarity=0.081 Sum_probs=113.3
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCc------------ce-EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGR------------PT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL 131 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 131 (271)
++.+..++.+..+|.++++.+........ .. ... .+..+++++.++.+..+|.++++. ...
T Consensus 191 v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~----~w~ 264 (376)
T 3q7m_A 191 AVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQI----MWK 264 (376)
T ss_dssp EEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCE----EEE
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcE----Eee
Confidence 44667789999999999998777654311 01 111 246688888899999999998875 333
Q ss_pred ecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC
Q 024185 132 VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 132 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
... .....+.. ++..++.++.++.+..+|..+++.+......... ....+.. .+..++.++.+|.+..+|..+
T Consensus 265 ~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~--~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 265 REL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR-LLTSPVL--YNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp ECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS-CCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred ccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC-cccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence 321 23344433 3567888888999999999999987766522111 1222333 245788888999999999999
Q ss_pred ceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEc
Q 024185 212 RNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWI 248 (271)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~ 248 (271)
++.+.........+.......++++++... |.+..|+
T Consensus 338 G~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 338 GRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred CcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 999887765333333222223555555444 7888886
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=7e-07 Score=68.43 Aligned_cols=177 Identities=8% Similarity=-0.029 Sum_probs=113.5
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec--CCcceEEEcCCCCEEEEEec---CCeEEEEeCC
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL--RGRPTVAFDQQGLVFAVAME---AGAIKLFDSR 120 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~---d~~i~i~d~~ 120 (271)
.....+++++++..+ +++....+.|.+++.+.......... .....++++|++..|+.+.. .+.|..+++.
T Consensus 79 ~~p~~ia~d~~~~~l----yv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 79 GSPEGIALDHLGRTI----FWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp CCEEEEEEETTTTEE----EEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred CCccEEEEEecCCeE----EEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 456779999876543 33556678899999865433222222 23455999997776666654 3688888886
Q ss_pred CCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe-cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEe-
Q 024185 121 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG- 198 (271)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 198 (271)
.... .............++++|++..|+.+. ..+.|..+|.........+.... ....++.. +..++.+
T Consensus 155 g~~~----~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~---~P~gi~~d--~~~lyva~ 225 (267)
T 1npe_A 155 GTNR----RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY--GKNLYYTD 225 (267)
T ss_dssp SCCC----EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE--TTEEEEEE
T ss_pred CCCc----EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCC---CceEEEEe--CCEEEEEE
Confidence 5432 111222234578899999877666555 46899999987544333333212 24456554 4455544
Q ss_pred cCCCcEEEEEcCCceeEEEecCCc-ceeEEEEEecCCc
Q 024185 199 SGDGTLHAWNINTRNEVACWNGNI-GVVACLKWAPRRA 235 (271)
Q Consensus 199 ~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~ 235 (271)
...+.|..+|..+++.+..+.... ....++++.|++.
T Consensus 226 ~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 226 WKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 456899999999999988886433 2467888888864
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.4e-08 Score=79.69 Aligned_cols=223 Identities=8% Similarity=0.001 Sum_probs=134.9
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccc---------cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATS---------KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA 82 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 82 (271)
+.+.++..++.+..++..++...-. +... ...+.......++. ++.++.++.+..+|.+++
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------v~v~~~~g~l~a~d~~tG 123 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWS----VSLAEKDGWFSKEPALLSGGVTVSGGH------VYIGSEKAQVYALNTSDG 123 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEE----EECCC---CCSCCCCCEEEEEEEETTE------EEEEETTSEEEEEETTTC
T ss_pred CEEEEEcCCCeEEEEEccCCceeee----ecCccccccccccCcccccCceEeCCE------EEEEcCCCEEEEEECCCC
Confidence 4455566677888888776632211 2211 12222222223333 446778899999999999
Q ss_pred ceeEEEecCC-cc-eEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccce-----EEEEEcCCCcEEEEEe
Q 024185 83 SFQGILRLRG-RP-TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV-----CDIKFSNDGKSMLLTT 155 (271)
Q Consensus 83 ~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~ 155 (271)
+.+....... .. ..... +..+++++.++.+..+|.++++. ........... ...... +..+++++
T Consensus 124 ~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~ 195 (376)
T 3q7m_A 124 TVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAV----KWTVNLDMPSLSLRGESAPTTA--FGAAVVGG 195 (376)
T ss_dssp CEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCE----EEEEECCC-----CCCCCCEEE--TTEEEECC
T ss_pred CEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcE----EEEEeCCCCceeecCCCCcEEE--CCEEEEEc
Confidence 9887776543 11 12222 45788888899999999998875 33332211110 111222 34677888
Q ss_pred cCCeEEEEECCCCeEEEEeecCCCCCc-----eeeEEECC--CCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEE
Q 024185 156 TNNNIYVLDAYGGEKRCGFSLEPSPNT-----NTEATFTP--DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACL 228 (271)
Q Consensus 156 ~d~~i~~~d~~~~~~~~~~~~~~~~~~-----v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 228 (271)
.++.+..+|..+++.+........... +..+.-.| .+..++.++.++.+..+|.++++.+...... ....+
T Consensus 196 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~ 273 (376)
T 3q7m_A 196 DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVNDF 273 (376)
T ss_dssp TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEEE
T ss_pred CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCCc
Confidence 899999999999998877654321100 00000111 2456777888999999999999988776532 23444
Q ss_pred EEecCCcEEEEeC-CeEEEEcCCCCCCC
Q 024185 229 KWAPRRAMFVAAS-SVLSFWIPNPSSNS 255 (271)
Q Consensus 229 ~~s~~~~~l~~~~-~~v~iw~~~~~~~~ 255 (271)
... ++.+++... +.+..+|..+++..
T Consensus 274 ~~~-~~~l~~~~~~g~l~~~d~~tG~~~ 300 (376)
T 3q7m_A 274 IVD-GNRIYLVDQNDRVMALTIDGGVTL 300 (376)
T ss_dssp EEE-TTEEEEEETTCCEEEEETTTCCEE
T ss_pred eEE-CCEEEEEcCCCeEEEEECCCCcEE
Confidence 443 444444444 78999999988764
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=6.5e-08 Score=73.60 Aligned_cols=168 Identities=7% Similarity=0.006 Sum_probs=114.1
Q ss_pred cceeEEEecCCc---ceEEEcCCCCEEEEEec--CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe-
Q 024185 82 ASFQGILRLRGR---PTVAFDQQGLVFAVAME--AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT- 155 (271)
Q Consensus 82 ~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 155 (271)
.+.+.+++.... ..++|++++..+++.+. ++.|.++|+.+++. .....+..+. ....+++. ++.|+.+.
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v--~~~i~l~~~~-fgeGi~~~--g~~lyv~t~ 83 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV--ENIHKMDDSY-FGEGLTLL--NEKLYQVVW 83 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE--EEEEECCTTC-CEEEEEEE--TTEEEEEET
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE--EEEEecCCCc-ceEEEEEe--CCEEEEEEe
Confidence 345566654432 34999998644444333 57999999999885 3333343321 22344554 45565554
Q ss_pred cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc--c---eeEEEEE
Q 024185 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI--G---VVACLKW 230 (271)
Q Consensus 156 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~---~v~~~~~ 230 (271)
.++.+.++|..+.+.+.++... .+. ...+++||+.++.+..++.|.++|..+.+.+..+.-.. . ..+.+.|
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g-~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ-MKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC-SSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred cCCEEEEEECCCCcEEEEEECC-CCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence 5889999999999999988654 111 14466788877777778899999999998888775321 1 3678888
Q ss_pred ecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 231 APRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 231 s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
. +|++.+... +.|.+-|+.+++......
T Consensus 160 ~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~ 189 (266)
T 2iwa_A 160 I-NGEVWANIWQTDCIARISAKDGTLLGWIL 189 (266)
T ss_dssp E-TTEEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred E-CCEEEEecCCCCeEEEEECCCCcEEEEEE
Confidence 8 776665553 889999999998766554
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=6e-08 Score=84.19 Aligned_cols=234 Identities=12% Similarity=0.038 Sum_probs=145.8
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEccccc----ceEEeeEEecCCchhhhhhhhhhc-----cCceEEEEEecCc
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSK----GIRRGLFLSACLQLMIALCLVLLT-----TALEYGIFVLMLA 82 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~ 82 (271)
..++++..++.+..++..+|...-. +.... ..+...-.-.++.. ++..+ .+|.|+.+|.++|
T Consensus 118 ~~v~v~~~dg~l~alD~~tG~~~W~----~~~~~~~~~~~~~~~P~v~~~~v-----~vg~~~~~~~~~g~v~a~D~~tG 188 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKTGKAIWS----QQTTDPAKPYSITGAPRVVKGKV-----IIGNGGAEYGVRGFVSAYDADTG 188 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEE----EECSCTTSSCBCCSCCEEETTEE-----EECCBCTTTCCBCEEEEEETTTC
T ss_pred CEEEEEcCCCEEEEEECCCCCEeee----eccCCCCCcceecCCCEEECCEE-----EEeCCCCCcCCCCEEEEEECCCC
Confidence 4566667788888888877743222 22110 11111001113333 12221 3689999999999
Q ss_pred ceeEEEecC---C-----------------------------c-ceEEEcCCCCEEEEEecCC-----------------
Q 024185 83 SFQGILRLR---G-----------------------------R-PTVAFDQQGLVFAVAMEAG----------------- 112 (271)
Q Consensus 83 ~~~~~~~~~---~-----------------------------~-~~~~~~~~~~~l~~~~~d~----------------- 112 (271)
+.+..+... . . ..++++|+...++.++.++
T Consensus 189 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~ 268 (668)
T 1kv9_A 189 KLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLY 268 (668)
T ss_dssp CEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred cEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence 988877531 0 0 1268888888888887665
Q ss_pred --eEEEEeCCCCCCCcceEEEec--CCc-------cceEEEEEcCCCc---EEEEEecCCeEEEEECCCCeEEEEeecCC
Q 024185 113 --AIKLFDSRSYDKGPFDTFLVG--GDT-------AEVCDIKFSNDGK---SMLLTTTNNNIYVLDAYGGEKRCGFSLEP 178 (271)
Q Consensus 113 --~i~i~d~~~~~~~~~~~~~~~--~~~-------~~v~~~~~s~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 178 (271)
.|..+|.++++. ...+. .|. .+.....+..+|+ .++.++.+|.++++|.++|+.+.......
T Consensus 269 ~~~v~AlD~~tG~~----~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~ 344 (668)
T 1kv9_A 269 LSSILAIRPDTGKL----AWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGK 344 (668)
T ss_dssp TTEEEEECTTTCCE----EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC
T ss_pred eeeEEEEcCCCCce----eeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccc
Confidence 499999999986 33332 222 2222223334665 68888999999999999999875433221
Q ss_pred CC----------C------------------------ceeeEEECCCCCEEEEe--------------------------
Q 024185 179 SP----------N------------------------TNTEATFTPDGQYVVSG-------------------------- 198 (271)
Q Consensus 179 ~~----------~------------------------~v~~~~~~~~~~~l~~~-------------------------- 198 (271)
.+ . .-..++++|+...++..
T Consensus 345 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~ 424 (668)
T 1kv9_A 345 VTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAG 424 (668)
T ss_dssp CCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSC
T ss_pred cccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcc
Confidence 00 0 00126778876665531
Q ss_pred ----------cCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 199 ----------SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 199 ----------~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
..+|.|..||+.+++.+.+.+.+. +.....+...+.+++.++ +.++.||.++++.+-...
T Consensus 425 ~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 425 FADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp GGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 124789999999999988775332 233344455677777776 889999999998765543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=4.2e-09 Score=84.39 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=67.9
Q ss_pred EEEcCCCcEEEEEec-C--------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCE-EEEec-CCCcEEEEEcC
Q 024185 142 IKFSNDGKSMLLTTT-N--------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY-VVSGS-GDGTLHAWNIN 210 (271)
Q Consensus 142 ~~~s~~~~~l~~~~~-d--------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-~dg~i~iwd~~ 210 (271)
++++||++.++++.. . +.+.++|+.+.+.+.++..... ...+.|+|||++ +++.. .++.|.++|+.
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~---p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD---SDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE---ECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCC---cceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 689999998887643 2 3567999999999888876543 677999999984 45555 48999999999
Q ss_pred CceeEEEecCCcceeEEEEEec
Q 024185 211 TRNEVACWNGNIGVVACLKWAP 232 (271)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~s~ 232 (271)
+++.+.+++.... ...+++.+
T Consensus 346 t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 346 SDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp SCEEEEECCCCSC-CCEEECCC
T ss_pred CCcEEEEEECCCC-CCEEEeec
Confidence 9999999976544 35666654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.02 E-value=6.4e-08 Score=72.90 Aligned_cols=165 Identities=13% Similarity=0.110 Sum_probs=111.5
Q ss_pred eeEEEecCCc---ceEEEcCCCCEEEEEecCC--eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe-cC
Q 024185 84 FQGILRLRGR---PTVAFDQQGLVFAVAMEAG--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TN 157 (271)
Q Consensus 84 ~~~~~~~~~~---~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d 157 (271)
.+++++.... ..+.|+ ++.++.+.+.+| .|+.+|+++++. .....+.. ........++++.|+... .+
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv--~~~~~l~~---~~FgeGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT--LQQIELGK---RYFGEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE--EEEEECCT---TCCEEEEEEETTEEEEEESSS
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE--EEEEecCC---ccceeEEEEeCCEEEEEEeeC
Confidence 4556644332 238888 666666666665 899999999886 33333332 222222333455565554 58
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC--c---ceeEEEEEec
Q 024185 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN--I---GVVACLKWAP 232 (271)
Q Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~~~~s~ 232 (271)
+.+.+||..+.+.+.++...... ..+++|++.|+.+..++.|.++|..+.+.+..+.-. . ..++.+.|.
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~eG-----~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~- 180 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDGEG-----WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV- 180 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSSCC-----CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred CEEEEEECccCcEEEEEECCCCc-----eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence 89999999999999998865432 233467777777776788999999999988877542 2 234568887
Q ss_pred CCcEEEEeC--CeEEEEcCCCCCCCcCCCC
Q 024185 233 RRAMFVAAS--SVLSFWIPNPSSNSTDEST 260 (271)
Q Consensus 233 ~~~~l~~~~--~~v~iw~~~~~~~~~~~~~ 260 (271)
+|++.+..- +.|.+.|.++++.......
T Consensus 181 ~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 181 DGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 777665553 7899999999988665554
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.99 E-value=8.5e-08 Score=72.27 Aligned_cols=164 Identities=11% Similarity=0.008 Sum_probs=112.0
Q ss_pred ceeEEEecCCcc---eEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEE-ecCC
Q 024185 83 SFQGILRLRGRP---TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNN 158 (271)
Q Consensus 83 ~~~~~~~~~~~~---~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~ 158 (271)
+.+++++..... .+.|+ ++.++.+.+.+|.|+.+|+++++. .... +... ..-..+++ +++.|+.. -.++
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv--~~~~-l~~~-~FgeGit~--~g~~Ly~ltw~~~ 116 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQP--VWME-RLGN-IFAEGLAS--DGERLYQLTWTEG 116 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSC--SEEE-ECTT-CCEEEEEE--CSSCEEEEESSSC
T ss_pred EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcE--EeEE-CCCC-cceeEEEE--eCCEEEEEEccCC
Confidence 445556443322 37786 355666667788999999999986 3344 4432 11123444 34445444 4589
Q ss_pred eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecC--Ccc---eeEEEEEecC
Q 024185 159 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG--NIG---VVACLKWAPR 233 (271)
Q Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~---~v~~~~~s~~ 233 (271)
.+.+||..+.+.+.++...... ..+++|++.|+.+..++.|.++|..+.+.+.++.- +.. .++.+.|. +
T Consensus 117 ~v~V~D~~Tl~~~~ti~~~~eG-----wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d 190 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRYSGEG-----WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N 190 (268)
T ss_dssp EEEEEETTTTEEEEEEECSSCC-----CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEEEEECCcCcEEEEEeCCCce-----eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence 9999999999999998864432 22336788888777788999999999998887743 222 34678887 7
Q ss_pred CcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 234 RAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 234 ~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
|++.+..- +.|.+-|.++++......
T Consensus 191 G~lyanvw~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp TEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred CEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence 77665553 789999999998766554
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-06 Score=65.91 Aligned_cols=205 Identities=8% Similarity=0.039 Sum_probs=132.4
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC---CcceEEEcCCCCEEEEEecCCeEE
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR---GRPTVAFDQQGLVFAVAMEAGAIK 115 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~ 115 (271)
+.+.+-.+.+..++++|++..+ ++....++.|...|.. ++.++.+... ....+++.+++.++++.-.++.+.
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L----~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTL----FSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIY 94 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEE----EEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEE
T ss_pred eECCCcccCcceeEEeCCCCEE----EEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEE
Confidence 3566777789999999987653 4456778999999997 8888877543 344589988888766665678899
Q ss_pred EEeCCCCCC-CcceEEEec----CCccceEEEEEcCCCcEEEEEecCCeEEEEECC---CCeEEEEee-----cCCCCCc
Q 024185 116 LFDSRSYDK-GPFDTFLVG----GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY---GGEKRCGFS-----LEPSPNT 182 (271)
Q Consensus 116 i~d~~~~~~-~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~---~~~~~~~~~-----~~~~~~~ 182 (271)
++++..... .......+. ........++|+|+++.|+++.......+|... ..+.+..+. .......
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 998866542 011222211 234557899999998888877765444555443 111122221 1111123
Q ss_pred eeeEEECCCCC-EEEEecCCCcEEEEEcCCceeEEEecCCc---------ceeEEEEEecCCcEEEEeC-CeEEEEcC
Q 024185 183 NTEATFTPDGQ-YVVSGSGDGTLHAWNINTRNEVACWNGNI---------GVVACLKWAPRRAMFVAAS-SVLSFWIP 249 (271)
Q Consensus 183 v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~-~~v~iw~~ 249 (271)
..+++++|... +++....++.+..+|.. ++.+..+.-.. .....++|.|+|++.+++- +-++.|..
T Consensus 175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred ceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 67799999754 55556667889999965 55555442211 1458999999999777765 65666644
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.8e-07 Score=78.51 Aligned_cols=236 Identities=13% Similarity=0.033 Sum_probs=141.0
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccc--eEE-eeEEecCCchhhhhhhhhhc-----cCceEEEEEecCcc
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKG--IRR-GLFLSACLQLMIALCLVLLT-----TALEYGIFVLMLAS 83 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~-~~~~s~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~ 83 (271)
..++++..++.+..++..++...-.. ....+.. .+. .... .++.. ++... .++.|+.+|.++|+
T Consensus 116 ~~v~v~~~dg~l~alD~~tG~~~W~~--~~~~~~~~~~~~~~P~v-~~g~v-----~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 116 GQIVKKQANGHLLALDAKTGKINWEV--EVCDPKVGSTLTQAPFV-AKDTV-----LMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEE--ECCCGGGTCBCCSCCEE-ETTEE-----EEECBCGGGTCCCEEEEEETTTCC
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEe--cCCCCCccceeccCCEE-ECCEE-----EEEecCCccCCCCEEEEEECCCCc
Confidence 45566666788888888777332110 1111110 111 1111 13433 22222 27899999999999
Q ss_pred eeEEEecCCc----------------------------------------ceEEEcCCCCEEEEEecC------------
Q 024185 84 FQGILRLRGR----------------------------------------PTVAFDQQGLVFAVAMEA------------ 111 (271)
Q Consensus 84 ~~~~~~~~~~----------------------------------------~~~~~~~~~~~l~~~~~d------------ 111 (271)
.+..+..... ..+++.++...++.+..+
T Consensus 188 ~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd 267 (571)
T 2ad6_A 188 LKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGD 267 (571)
T ss_dssp EEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred EEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCC
Confidence 8877754311 125677777777776532
Q ss_pred ----CeEEEEeCCCCCCCcceEEEecCCc--------cceEEEEEcCCCc---EEEEEecCCeEEEEECCCCeEEEEeec
Q 024185 112 ----GAIKLFDSRSYDKGPFDTFLVGGDT--------AEVCDIKFSNDGK---SMLLTTTNNNIYVLDAYGGEKRCGFSL 176 (271)
Q Consensus 112 ----~~i~i~d~~~~~~~~~~~~~~~~~~--------~~v~~~~~s~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~ 176 (271)
+.|..+|.++++. .-.+....|. .++. +...++|+ .++.++.+|.++++|..+++.+..+..
T Consensus 268 ~~y~~~v~Ald~~tG~~--~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 268 NKWTMTIWGRDLDTGMA--KWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp CTTTTEEEEEETTTCCE--EEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred ceeEEEEEEEecCCCcE--EEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence 3699999999886 2122222221 1121 22334774 567788899999999999998876653
Q ss_pred CCCC-----------Cce--------------------------eeEEECCCCCEEEEec--------------------
Q 024185 177 EPSP-----------NTN--------------------------TEATFTPDGQYVVSGS-------------------- 199 (271)
Q Consensus 177 ~~~~-----------~~v--------------------------~~~~~~~~~~~l~~~~-------------------- 199 (271)
.... ..+ ..++++|+...++...
T Consensus 345 ~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 424 (571)
T 2ad6_A 345 DPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFF 424 (571)
T ss_dssp STTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcc
Confidence 3200 001 2357888877776543
Q ss_pred -----------------CCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 200 -----------------GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 200 -----------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
.+|.+..||+.+++.+.+++.. ..+.+......+..++.++ +.++.||.++++.+-..+
T Consensus 425 ~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 425 VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 3578999999999988877532 2222323333445555565 889999999998765443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.4e-08 Score=84.17 Aligned_cols=198 Identities=5% Similarity=-0.063 Sum_probs=110.5
Q ss_pred eEEeeEEe-cCCchhhhhhhhhhccCceEEEEEecCc-ceeE-EEecCCcceEEEcCCCCEEEEEecC-----CeEEEEe
Q 024185 47 IRRGLFLS-ACLQLMIALCLVLLTTALEYGIFVLMLA-SFQG-ILRLRGRPTVAFDQQGLVFAVAMEA-----GAIKLFD 118 (271)
Q Consensus 47 ~v~~~~~s-~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d 118 (271)
.+....+| |||+.+++..--.|+....|+++|++++ +.+. .+.. ....++|+|||+.|+....+ ..|+.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~-~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG-TNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE-ECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC-ceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 56778999 9999854411112233346999999988 6321 1211 12348999999988877654 2688888
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec---CCeEEEEECCCCe-EE--EEeecCCCCCceeeEEECCCC
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGE-KR--CGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~-~~--~~~~~~~~~~~v~~~~~~~~~ 192 (271)
+.+++......+.. ........+.|||||++|+..+. ...|+++|+.++. .. ..+..... ....++.|+.++
T Consensus 254 lgt~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~-~~~~s~~~~~g~ 331 (751)
T 2xe4_A 254 MGKLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK-GVRYDVQMHGTS 331 (751)
T ss_dssp TTSCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT-TCCEEEEEETTT
T ss_pred CCCCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC-CceEEEeeeeCC
Confidence 87654211112221 22234678899999999887653 4568899988752 12 33322211 223445544444
Q ss_pred CEEEEecCC----CcEEEEEcCCceeEEE-ecCCcc--eeEEEEEecCCcEEEEe-C--C--eEEEEcC
Q 024185 193 QYVVSGSGD----GTLHAWNINTRNEVAC-WNGNIG--VVACLKWAPRRAMFVAA-S--S--VLSFWIP 249 (271)
Q Consensus 193 ~~l~~~~~d----g~i~iwd~~~~~~~~~-~~~~~~--~v~~~~~s~~~~~l~~~-~--~--~v~iw~~ 249 (271)
.+++....+ ..|..+|+.++..... +-.+.. .+..+.+ ++..|+.. . + .+.++++
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEec
Confidence 444444433 3577777764222122 222322 3445544 45555444 2 4 4777775
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.2e-07 Score=70.74 Aligned_cols=192 Identities=8% Similarity=-0.021 Sum_probs=117.6
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec----------------------CCcceEEEcCCCCEE
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL----------------------RGRPTVAFDQQGLVF 105 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~l 105 (271)
...+++.+++.. +.++..++.|..||.++++.. .+.. .....+++.+++..|
T Consensus 21 p~~i~~d~~g~~-----l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l 94 (322)
T 2fp8_A 21 PNSFTFDSTNKG-----FYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL 94 (322)
T ss_dssp CCCEECCTTCSS-----EEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE
T ss_pred ceEEEEcCCCCE-----EEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcE
Confidence 345778888875 456677889999988765432 2221 123458898733446
Q ss_pred EEEecCCeEEEEeCCCCCCCcceEEEecC-CccceEEEEEcC-CCcEEEEEec-----------------CCeEEEEECC
Q 024185 106 AVAMEAGAIKLFDSRSYDKGPFDTFLVGG-DTAEVCDIKFSN-DGKSMLLTTT-----------------NNNIYVLDAY 166 (271)
Q Consensus 106 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~-----------------d~~i~~~d~~ 166 (271)
+++...+.+..+|..+++...+.. ...+ .......+++.+ +|+..++-.. ++.|..||..
T Consensus 95 ~v~d~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHATQLAT-SVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EEEETTTEEEEECTTCEECEEEES-EETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EEEECCCCEEEEeCCCCEEEEecc-cCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 666555668888877554311100 1111 113467899999 9976655432 3679999987
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEe-cCCCcEEEEEcCCce--eEEEecCCcceeEEEEEecCCcEEEEeC--
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG-SGDGTLHAWNINTRN--EVACWNGNIGVVACLKWAPRRAMFVAAS-- 241 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 241 (271)
+++.......... ...++++|++++|+.+ ...+.|..+++.... ....+....+ ...+++.++|++.++..
T Consensus 174 ~~~~~~~~~~~~~---p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~ 249 (322)
T 2fp8_A 174 TKETTLLLKELHV---PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEE 249 (322)
T ss_dssp TTEEEEEEEEESC---CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEE
T ss_pred CCEEEEeccCCcc---CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCc
Confidence 7765433222222 4558999999866655 556889999987421 1111111123 67899999998766653
Q ss_pred ----------CeEEEEcCC
Q 024185 242 ----------SVLSFWIPN 250 (271)
Q Consensus 242 ----------~~v~iw~~~ 250 (271)
+.|..+|..
T Consensus 250 ~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp TTSSTTSCEEEEEEEECTT
T ss_pred ccccccCCCccEEEEECCC
Confidence 347777764
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-06 Score=74.85 Aligned_cols=234 Identities=12% Similarity=0.008 Sum_probs=139.0
Q ss_pred EEeeecceeeEEEEeeccceeeEEEEEccccc--ceEE-eeEEecCCchhhhhhhhhhc-----cCceEEEEEecCccee
Q 024185 14 LLFARQNIILILLESLCGIYQCMIIEFFATSK--GIRR-GLFLSACLQLMIALCLVLLT-----TALEYGIFVLMLASFQ 85 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~-~~~~s~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~ 85 (271)
++++..++.+..++..+|...-.. ....+. ..+. ...+ .++.. ++.++ .+|.|+-+|.++|+.+
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~--~~~~~~~~~~~~ssP~v-~~g~V-----~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKV--ENSDIKVGSTLTIAPYV-VKDKV-----IIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEE--ECCCGGGTCBCCSCCEE-ETTEE-----EECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEee--cCCCCCccceeecCCEE-ECCEE-----EEEecccccCCCCeEEEEECCCCcEE
Confidence 666667888888888777332110 111110 0111 1111 13433 22222 4799999999999988
Q ss_pred EEEecCCc---------------------------------------c-eEEEcCCCCEEEEEecC--------------
Q 024185 86 GILRLRGR---------------------------------------P-TVAFDQQGLVFAVAMEA-------------- 111 (271)
Q Consensus 86 ~~~~~~~~---------------------------------------~-~~~~~~~~~~l~~~~~d-------------- 111 (271)
..+..... + .+++.++...++.+..+
T Consensus 196 W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~ 275 (599)
T 1w6s_A 196 WRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNK 275 (599)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCcc
Confidence 77754321 0 25667777888887655
Q ss_pred --CeEEEEeCCCCCCCcceEEEecCCc--------cceEEEEEc-CCC---cEEEEEecCCeEEEEECCCCeEEEEeecC
Q 024185 112 --GAIKLFDSRSYDKGPFDTFLVGGDT--------AEVCDIKFS-NDG---KSMLLTTTNNNIYVLDAYGGEKRCGFSLE 177 (271)
Q Consensus 112 --~~i~i~d~~~~~~~~~~~~~~~~~~--------~~v~~~~~s-~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 177 (271)
+.|..+|.++++. .-.+....|. .++. +... .+| +.++.++.+|.++++|.++|+.+......
T Consensus 276 y~~sv~Ald~~TG~~--~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~ 352 (599)
T 1w6s_A 276 WTMTIFGRDADTGEA--KFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLD 352 (599)
T ss_dssp TSSEEEEEETTTCCE--EEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred ccceEEEEeCCCCce--eeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccccc
Confidence 3899999999886 2222232231 1121 2222 567 56777889999999999999988765432
Q ss_pred CC----------C-Cc--------------------------eeeEEECCCCCEEEEe----------------------
Q 024185 178 PS----------P-NT--------------------------NTEATFTPDGQYVVSG---------------------- 198 (271)
Q Consensus 178 ~~----------~-~~--------------------------v~~~~~~~~~~~l~~~---------------------- 198 (271)
.. . .. -..++++|+..++++.
T Consensus 353 ~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~ 432 (599)
T 1w6s_A 353 DTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFV 432 (599)
T ss_dssp TTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred CCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCccee
Confidence 10 0 00 1235677776655442
Q ss_pred -----------c------CCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 199 -----------S------GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 199 -----------~------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+ ..|.+..||+.+++.+.+.+.. .+...-.....+.+++.++ +.++.||.++++.+-..+
T Consensus 433 g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 433 GATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp CEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 1 3478999999999988776421 1121111222455555565 889999999998765443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.88 E-value=8.3e-07 Score=66.28 Aligned_cols=152 Identities=13% Similarity=0.098 Sum_probs=103.3
Q ss_pred EEEcCCCCEEEEEecC--CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEE-EecCCeEEEEECCCCeEEE
Q 024185 96 VAFDQQGLVFAVAMEA--GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL-TTTNNNIYVLDAYGGEKRC 172 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~~d~~~~~~~~ 172 (271)
+.|++ +.++.+.+.+ +.|+.+|+++++. .....+..+.- -..++.. ++.|+. .-.++.+.+||..+.+.+.
T Consensus 26 L~~~~-~~LyestG~~g~S~v~~vD~~tgkv--~~~~~l~~~~f-geGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ 99 (243)
T 3mbr_X 26 LFYLR-GHLYESTGETGRSSVRKVDLETGRI--LQRAEVPPPYF-GAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRA 99 (243)
T ss_dssp EEEET-TEEEEEECCTTSCEEEEEETTTCCE--EEEEECCTTCC-EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred EEEEC-CEEEEECCCCCCceEEEEECCCCCE--EEEEeCCCCcc-eeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEE
Confidence 88876 5545555554 4899999999886 33444433211 1223333 444544 4458999999999999999
Q ss_pred EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC--c---ceeEEEEEecCCcEEEEeC--CeEE
Q 024185 173 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN--I---GVVACLKWAPRRAMFVAAS--SVLS 245 (271)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~~~~s~~~~~l~~~~--~~v~ 245 (271)
++...... ..++++++.|+.+..++.|.++|..+.+.+.++.-. . ..++.+.|. +|++.+..- +.|.
T Consensus 100 ti~~~~~G-----wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~ 173 (243)
T 3mbr_X 100 RFRYPGEG-----WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIA 173 (243)
T ss_dssp EEECSSCC-----CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEE
T ss_pred EEeCCCCc-----eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEE
Confidence 98865432 233456777777667889999999999988877532 1 235677776 677665552 7899
Q ss_pred EEcCCCCCCCcCCC
Q 024185 246 FWIPNPSSNSTDES 259 (271)
Q Consensus 246 iw~~~~~~~~~~~~ 259 (271)
+.|+++++......
T Consensus 174 vIDp~tG~V~~~id 187 (243)
T 3mbr_X 174 RIDPASGKVVAWID 187 (243)
T ss_dssp EECTTTCBEEEEEE
T ss_pred EEECCCCCEEEEEE
Confidence 99999998766554
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-06 Score=73.46 Aligned_cols=236 Identities=11% Similarity=0.064 Sum_probs=139.5
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEccccc---ceEEeeEEecC---Cchhhhhhhhhhc------cCceEEEEEe
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSK---GIRRGLFLSAC---LQLMIALCLVLLT------TALEYGIFVL 79 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~---~~~~~~~~l~s~~------~dg~i~iwd~ 79 (271)
..++++..++.+..++..+|...-.. ....+. .......+..+ ++.. ++.++ .++.|+-+|.
T Consensus 118 ~~v~~~t~dg~l~AlD~~TG~~~W~~--~~~~~~~~~~~~~sP~v~~~~~~G~~~----v~vg~~~~e~~~~g~v~alD~ 191 (582)
T 1flg_A 118 DKVFFGTLDASVVALNKNTGKVVWKK--KFADHGAGYTMTGAPTIVKDGKTGKVL----LIHGSSGDEFGVVGRLFARDP 191 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEE--ECSCGGGTCBCCSCCEEEECTTTCCEE----EEECCBCGGGCCBCEEEEECT
T ss_pred CEEEEEeCCCEEEEEECCCCCEEeee--cCCCCCcCcccccCCEEeCCCcCCcEE----EEEeccccccCCCCEEEEEEC
Confidence 45666677888888888877432111 111111 01111112222 2211 22332 3789999999
Q ss_pred cCcceeEEEecCC------------------------------------------c-ceEEEcCCCCEEEEEec------
Q 024185 80 MLASFQGILRLRG------------------------------------------R-PTVAFDQQGLVFAVAME------ 110 (271)
Q Consensus 80 ~~~~~~~~~~~~~------------------------------------------~-~~~~~~~~~~~l~~~~~------ 110 (271)
++|+.+...+... . ..++++|+...++.+..
T Consensus 192 ~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~ 271 (582)
T 1flg_A 192 DTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWN 271 (582)
T ss_dssp TTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSC
T ss_pred CCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCccc
Confidence 9998877654321 0 12567777777777763
Q ss_pred --------------C----CeEEEEeCCCCCCCcceEEEe--cCCc--------cceEEEEEc-CCCc---EEEEEecCC
Q 024185 111 --------------A----GAIKLFDSRSYDKGPFDTFLV--GGDT--------AEVCDIKFS-NDGK---SMLLTTTNN 158 (271)
Q Consensus 111 --------------d----~~i~i~d~~~~~~~~~~~~~~--~~~~--------~~v~~~~~s-~~~~---~l~~~~~d~ 158 (271)
| +.|..+|..+++. ...+ ..|. .++. +... .+|+ .++.++.+|
T Consensus 272 ~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~----~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G 346 (582)
T 1flg_A 272 TWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV----KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNG 346 (582)
T ss_dssp GGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE----EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTS
T ss_pred CcccccCCCcccccCCcccceEEEEeCCCCCE----EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCc
Confidence 2 5899999999986 3333 2232 1121 1222 4674 678889999
Q ss_pred eEEEEECCCCeEEEEeecCCCC-----------C--------------------------------ceeeEEECCCCCEE
Q 024185 159 NIYVLDAYGGEKRCGFSLEPSP-----------N--------------------------------TNTEATFTPDGQYV 195 (271)
Q Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~-----------~--------------------------------~v~~~~~~~~~~~l 195 (271)
.++++|.++|+.+..+...... . .-..++++|+...+
T Consensus 347 ~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~ 426 (582)
T 1flg_A 347 FFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLF 426 (582)
T ss_dssp EEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCE
T ss_pred eEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEE
Confidence 9999999999988765543200 0 00135667765555
Q ss_pred EEec---------------------------------CCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 196 VSGS---------------------------------GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 196 ~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
++.. .+|.|..||+.+++.+.+.+... ++..-.....+.+++.++
T Consensus 427 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~ 505 (582)
T 1flg_A 427 YVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTG 505 (582)
T ss_dssp EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECT
T ss_pred EEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECC
Confidence 4422 25789999999999987765332 222212222355666666
Q ss_pred -CeEEEEcCCCCCCCcCCC
Q 024185 242 -SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 242 -~~v~iw~~~~~~~~~~~~ 259 (271)
+.++.||.++++.+-..+
T Consensus 506 dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 506 DGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp TSEEEEEETTTCCEEEEEE
T ss_pred CCcEEEEECCCCCEEEEec
Confidence 889999999998765544
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.1e-06 Score=66.70 Aligned_cols=189 Identities=14% Similarity=0.089 Sum_probs=114.6
Q ss_pred eEEeeEEec-CCchhhhhhhhhhccCceEEEEEecCcceeEEEec-------CCcceEEEcC-CCCEEEEEec-------
Q 024185 47 IRRGLFLSA-CLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL-------RGRPTVAFDQ-QGLVFAVAME------- 110 (271)
Q Consensus 47 ~v~~~~~s~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~-~~~~l~~~~~------- 110 (271)
....+++.+ ++.. + .+...+.+..+|.+++.. ..+.. .....+++.+ +|+..++-..
T Consensus 81 ~p~gi~~~~~~g~l-----~-v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~ 153 (322)
T 2fp8_A 81 RTYDISYNLQNNQL-----Y-IVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRG 153 (322)
T ss_dssp CEEEEEEETTTTEE-----E-EEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTC
T ss_pred CCceEEEcCCCCcE-----E-EEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccc
Confidence 467788987 6665 2 233334478888765542 22211 1234589999 8876555432
Q ss_pred ----------CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEE-ecCCeEEEEECCCCe--EEEEeecC
Q 024185 111 ----------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGE--KRCGFSLE 177 (271)
Q Consensus 111 ----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~--~~~~~~~~ 177 (271)
++.|..+|..+++. . .+.........++++|+++.|+.+ ..++.|..|++.... ....+...
T Consensus 154 ~~~~~~~~~~~g~v~~~d~~~~~~----~-~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~ 228 (322)
T 2fp8_A 154 VQQIMDTSDKTGRLIKYDPSTKET----T-LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI 228 (322)
T ss_dssp HHHHHHHTCCCEEEEEEETTTTEE----E-EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC
T ss_pred cceehcccCCCceEEEEeCCCCEE----E-EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC
Confidence 36788898876552 1 111112345678999999877666 456899999987421 11222211
Q ss_pred CCCCceeeEEECCCCCEEEEecC----------CCcEEEEEcCCceeEEEecCCc----ceeEEEEEecCCcEEEEeC--
Q 024185 178 PSPNTNTEATFTPDGQYVVSGSG----------DGTLHAWNINTRNEVACWNGNI----GVVACLKWAPRRAMFVAAS-- 241 (271)
Q Consensus 178 ~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~-- 241 (271)
+. ...++++++|++.++... .+.|..+|. .++.+..+.... ..++++++ .+++++++..
T Consensus 229 --~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~ 303 (322)
T 2fp8_A 229 --PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFH 303 (322)
T ss_dssp --SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSC
T ss_pred --CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCC
Confidence 12 567899999997766544 467888886 477777664332 34666766 4666665543
Q ss_pred CeEEEEcCCCC
Q 024185 242 SVLSFWIPNPS 252 (271)
Q Consensus 242 ~~v~iw~~~~~ 252 (271)
+.|..+++...
T Consensus 304 ~~i~~~~~~~~ 314 (322)
T 2fp8_A 304 GSVGILVYDKK 314 (322)
T ss_dssp SEEEEEEC---
T ss_pred CceEEEecccc
Confidence 67999987643
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-05 Score=63.21 Aligned_cols=200 Identities=10% Similarity=-0.057 Sum_probs=123.0
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec--CCcceEEEcCCCCEEEEE-ecCCeEEEEeCCCC
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL--RGRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSY 122 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~ 122 (271)
.....++|.+.+..+ +++-...+.|+.++++.......+.. .....+++.+.+..|+.+ ...+.|.+.++...
T Consensus 116 ~~~~gl~~d~~~~~l----y~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~ 191 (386)
T 3v65_B 116 ENAIALDFHHRRELV----FWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 191 (386)
T ss_dssp SCEEEEEEETTTTEE----EEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC
T ss_pred CccEEEEEecCCCeE----EEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC
Confidence 346678999765553 34556678899999876654333332 233458999866656555 45678988888754
Q ss_pred CCCcceEEEecCCccceEEEEEcCCCcEEEEEec-C-CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEe-c
Q 024185 123 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N-NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG-S 199 (271)
Q Consensus 123 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d-~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 199 (271)
.. ...+.........+++.|.+..|+.+.. . +.|..+++.... ...+.. ........++++|++..|+.+ +
T Consensus 192 ~~----~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~-~~~~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 192 HR----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIAD-THLFWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp SC----EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEEC-SSCSCEEEEEEEGGGTEEEEEET
T ss_pred ce----EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEEEEE-CCCCCeeeEEEeCCCCEEEEEEC
Confidence 43 2233333456789999997666655543 4 789888876433 222221 112336789999877766655 4
Q ss_pred CCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCc
Q 024185 200 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNST 256 (271)
Q Consensus 200 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~ 256 (271)
..+.|..+|+........+........++++. ++.++++.. +.|..++..+++...
T Consensus 266 ~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~ 323 (386)
T 3v65_B 266 KHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQE 323 (386)
T ss_dssp TTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceE
Confidence 46789999986443333333333445778883 444444443 778888865655443
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-05 Score=62.15 Aligned_cols=180 Identities=8% Similarity=-0.022 Sum_probs=110.6
Q ss_pred cCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC
Q 024185 70 TALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 147 (271)
Q Consensus 70 ~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 147 (271)
....|+..|+++.+....+... ....++|+++++.|+.+ ..++.|+.+++............+.........+++.+.
T Consensus 8 ~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 8 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp CBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 3456888898877665555433 34559999877666655 456899999987621000012222222245678899875
Q ss_pred CcEEE-EEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-C-CcEEEEEcCCceeEEEe-cCCcc
Q 024185 148 GKSML-LTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-D-GTLHAWNINTRNEVACW-NGNIG 223 (271)
Q Consensus 148 ~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~-~~~~~ 223 (271)
+..|+ +-...+.|.++|+........+.... .....++++|.+.+|+.+.. . +.|...++. +.....+ ...-.
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~--~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~ 164 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENG--SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQ 164 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTT--CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCS
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEEEECCC--CCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCC
Confidence 55454 44567899999987543322232222 23678999997766665544 2 688888875 4433333 22334
Q ss_pred eeEEEEEecCCcEEEEeC---CeEEEEcCCCC
Q 024185 224 VVACLKWAPRRAMFVAAS---SVLSFWIPNPS 252 (271)
Q Consensus 224 ~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~ 252 (271)
....++++|++..|..+. +.|..+|++..
T Consensus 165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence 578999999877666664 67999998753
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.8e-05 Score=69.05 Aligned_cols=198 Identities=14% Similarity=0.059 Sum_probs=131.0
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe---------cCCcceEEEcCCCCEEEEEecCCeEE
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR---------LRGRPTVAFDQQGLVFAVAMEAGAIK 115 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~d~~i~ 115 (271)
...+.++...++|.. ..|+.+ -+.+||..+++...... ...+.++...++|. |..|+.++-|.
T Consensus 262 ~~~i~~i~~d~~g~l------Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~ 333 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRL------WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLN 333 (795)
T ss_dssp CSBEEEEEECTTSCE------EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEE
T ss_pred CCeEEEEEEcCCCCE------EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeE
Confidence 356888888888875 234444 58889987766443221 12355577777777 66677777899
Q ss_pred EEeCCCCCCCcceEEEec-----CCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecC------CCCCcee
Q 024185 116 LFDSRSYDKGPFDTFLVG-----GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE------PSPNTNT 184 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------~~~~~v~ 184 (271)
.|+..+... ...... -....|.++...++|. |..|+.++-|..||..+++........ -....|.
T Consensus 334 ~~~~~~~~~---~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 409 (795)
T 4a2l_A 334 YYHPIRNRF---KNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK 409 (795)
T ss_dssp EECGGGGSS---EEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE
T ss_pred EeCCCcccc---eEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE
Confidence 998765542 111110 0235689999888887 667888877999998776544322111 1124588
Q ss_pred eEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec----CCcceeEEEEEecCCcEEEEeCCeEEEEcCCCCCC
Q 024185 185 EATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN----GNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSN 254 (271)
Q Consensus 185 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~~v~iw~~~~~~~ 254 (271)
++..+++|+.|..|+.++-+..+|..+++...-.. .....|.++...++|++.+...+.+..||..+++.
T Consensus 410 ~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~ 483 (795)
T 4a2l_A 410 AVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSF 483 (795)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEE
T ss_pred EEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeE
Confidence 88888899855666766679999988776443221 12456899999888987776666688999877654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-05 Score=70.64 Aligned_cols=227 Identities=10% Similarity=0.026 Sum_probs=143.4
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEc----ccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFF----ATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
..+.+++.++.+..++...+... ..... ......|.++...++|.. ..|+.++-+..||..+++....
T Consensus 321 g~lWigt~~~Gl~~~~~~~~~~~--~~~~~~~~~~l~~~~V~~i~~d~~g~l------WiGt~~~Gl~~~~~~~~~~~~~ 392 (795)
T 4a2l_A 321 GGMWLGTYFGGLNYYHPIRNRFK--NIRNIPYKNSLSDNVVSCIVEDKDKNL------WIGTNDGGLNLYNPITQRFTSY 392 (795)
T ss_dssp SCEEEEESSSCEEEECGGGGSSE--EECCCTTSSSCSCSSEEEEEECTTSCE------EEEESSSCEEEECTTTCCEEEE
T ss_pred cCEEEEECCCCeEEeCCCcccce--EEcCCCCCCCCCCCeeEEEEECCCCCE------EEEECCCCeEEEcCCCCcEEEE
Confidence 45566665566666654433211 10000 112456888888888774 4567777799999877654332
Q ss_pred Ee----------cCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEec---CCccceEEEEEcCCCcEEEEE
Q 024185 88 LR----------LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG---GDTAEVCDIKFSNDGKSMLLT 154 (271)
Q Consensus 88 ~~----------~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~ 154 (271)
.. ...+.++...++++.|.+|+.++-+..||..+++. ...... .....|.++...++|.. ..|
T Consensus 393 ~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~---~~~~~~~~~l~~~~v~~i~~d~~g~l-wig 468 (795)
T 4a2l_A 393 TLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV---ENFNQRNSQLVNENVYAILPDGEGNL-WLG 468 (795)
T ss_dssp CCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE---EEECTTTSCCSCSCEEEEEECSSSCE-EEE
T ss_pred ecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE---EEeecCCCCcCCCeeEEEEECCCCCE-EEE
Confidence 21 22355677777887577788777899999887653 111110 12357899998888874 444
Q ss_pred ecCCeEEEEECCCCeEEEEeec----CCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec-------CCcc
Q 024185 155 TTNNNIYVLDAYGGEKRCGFSL----EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-------GNIG 223 (271)
Q Consensus 155 ~~d~~i~~~d~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~ 223 (271)
+.+ .+..||..+++....... ......|.++..+++|++.+... +-+..||..+++. .+. ....
T Consensus 469 t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~ 543 (795)
T 4a2l_A 469 TLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKL 543 (795)
T ss_dssp ESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGS
T ss_pred ecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCC
Confidence 554 588999887765432211 11124588899999998666554 4588899877765 232 1234
Q ss_pred eeEEEEEecCCcEEEEeCCeEEEEcCCCCCCC
Q 024185 224 VVACLKWAPRRAMFVAASSVLSFWIPNPSSNS 255 (271)
Q Consensus 224 ~v~~~~~s~~~~~l~~~~~~v~iw~~~~~~~~ 255 (271)
.|.++...++|++.++..+.+..||..+++..
T Consensus 544 ~i~~i~~d~~g~lWigT~~Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 544 FTNCIYEASNGIIWVGTREGFYCFNEKDKQIK 575 (795)
T ss_dssp CEEEEEECTTSCEEEEESSCEEEEETTTTEEE
T ss_pred eeEEEEECCCCCEEEEeCCCceeECCCCCcEE
Confidence 68899999999977766667888888766543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-06 Score=74.21 Aligned_cols=164 Identities=12% Similarity=0.161 Sum_probs=106.5
Q ss_pred eEEEEEecCcceeEEEecC--C-------cc-e-EEEcCCCC---EEEEEecCCeEEEEeCCCCCCCcceEEEecC----
Q 024185 73 EYGIFVLMLASFQGILRLR--G-------RP-T-VAFDQQGL---VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG---- 134 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~~--~-------~~-~-~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---- 134 (271)
.|..+|.++|+.+..++.. . .+ . ..+..+|+ .++.++.+|.++++|..+++. +....+..
T Consensus 271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~--l~~~~~~~~~w~ 348 (668)
T 1kv9_A 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL--ISAEKFGKVTWA 348 (668)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE--EEEEESSCCCSE
T ss_pred eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE--eccccccccccc
Confidence 4889999999998887642 1 11 1 22334665 688889999999999999885 11111100
Q ss_pred -----Cc-cc------------------------eEEEEEcCCCcEEEEEe-----------------------------
Q 024185 135 -----DT-AE------------------------VCDIKFSNDGKSMLLTT----------------------------- 155 (271)
Q Consensus 135 -----~~-~~------------------------v~~~~~s~~~~~l~~~~----------------------------- 155 (271)
.. .+ -..++++|+...++...
T Consensus 349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 428 (668)
T 1kv9_A 349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA 428 (668)
T ss_dssp EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence 00 00 11267788766655421
Q ss_pred -------cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCccee-EE
Q 024185 156 -------TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVV-AC 227 (271)
Q Consensus 156 -------~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~ 227 (271)
.+|.|..||+.+++.+.+...... .....+...+.+++.++.||.++.||.++++.+..++...... .-
T Consensus 429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~---~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p 505 (668)
T 1kv9_A 429 TDVPAAVVSGALLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP 505 (668)
T ss_dssp CCCCGGGCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred CCCCCCCccceEEEEeCCCCcEEEEccCCCC---CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCc
Confidence 237899999999999887765432 2223444567789999999999999999999998886543211 23
Q ss_pred EEEecCCc-EEEEeC
Q 024185 228 LKWAPRRA-MFVAAS 241 (271)
Q Consensus 228 ~~~s~~~~-~l~~~~ 241 (271)
+.+..+|+ +++.++
T Consensus 506 ~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 506 MTFELAGRQYVAIMA 520 (668)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred eEEEECCEEEEEEEe
Confidence 44456777 444443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.73 E-value=5.4e-06 Score=65.16 Aligned_cols=200 Identities=12% Similarity=0.117 Sum_probs=123.8
Q ss_pred eeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcC----CCCE--EEEE-ec---CCeEEEEeC
Q 024185 50 GLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQ----QGLV--FAVA-ME---AGAIKLFDS 119 (271)
Q Consensus 50 ~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~--l~~~-~~---d~~i~i~d~ 119 (271)
.+..+|.....-. ++.....+-+.+||+ +|+.++.+.....+-+.+-| .|+. ++.+ .. +++|.+|++
T Consensus 30 avw~~~~dp~~s~--ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i 106 (355)
T 3amr_A 30 AIWLDPKTPQNSK--LITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (355)
T ss_dssp EEECCSSCGGGCE--EEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred cEecCCCCCCccE--EEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence 4555664322111 445566778999999 89988888765444444444 3332 3333 33 578999976
Q ss_pred C--CCCCCcceEEE-----ecCCccceEEEEE--cCC-Cc-EEEEEecCCeEEEEECC-------CCeEEEEeecCCCCC
Q 024185 120 R--SYDKGPFDTFL-----VGGDTAEVCDIKF--SND-GK-SMLLTTTNNNIYVLDAY-------GGEKRCGFSLEPSPN 181 (271)
Q Consensus 120 ~--~~~~~~~~~~~-----~~~~~~~v~~~~~--s~~-~~-~l~~~~~d~~i~~~d~~-------~~~~~~~~~~~~~~~ 181 (271)
. +++. .... +......+..+++ +|. ++ ++++...+|.+..|++. +.+.++++....
T Consensus 107 Dp~~~~l---~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--- 180 (355)
T 3amr_A 107 DGKNGTL---QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS--- 180 (355)
T ss_dssp CTTTCCE---EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS---
T ss_pred CCCCCce---eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC---
Confidence 3 3331 1110 0011144566666 774 44 57778889999999982 346677776544
Q ss_pred ceeeEEECCCCCEEEEecCCCcEEEEEcC-----CceeEEEec-CC-cceeEEEEEe--cCCc-EEEEeC---CeEEEEc
Q 024185 182 TNTEATFTPDGQYVVSGSGDGTLHAWNIN-----TRNEVACWN-GN-IGVVACLKWA--PRRA-MFVAAS---SVLSFWI 248 (271)
Q Consensus 182 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~-~~-~~~v~~~~~s--~~~~-~l~~~~---~~v~iw~ 248 (271)
.+..+..++....|+.+-++.-|..++.+ +++.+..+. ++ ...+..|+.. ++++ +|++++ +.+.+||
T Consensus 181 q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 181 QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 37788999988899999998767777754 345555542 22 2368888884 4555 565555 6799999
Q ss_pred CC-CCCCCcCC
Q 024185 249 PN-PSSNSTDE 258 (271)
Q Consensus 249 ~~-~~~~~~~~ 258 (271)
.+ +.+.+..+
T Consensus 261 r~~~~~~vg~f 271 (355)
T 3amr_A 261 RQGKNKYVADF 271 (355)
T ss_dssp SSTTCCEEEEE
T ss_pred CCCCCcEEEEE
Confidence 96 44444333
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.72 E-value=5e-05 Score=60.53 Aligned_cols=199 Identities=10% Similarity=-0.054 Sum_probs=122.3
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec--CCcceEEEcCCCCEEEEE-ecCCeEEEEeCCCC
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL--RGRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSY 122 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~ 122 (271)
.....++|++.+..+ +++-...+.|+.++++.......+.. .....+++.+.+..|+.+ ...+.|.+.++...
T Consensus 73 ~~~~~l~~d~~~~~l----y~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 148 (349)
T 3v64_C 73 ENAIALDFHHRRELV----FWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 148 (349)
T ss_dssp SCEEEEEEETTTTEE----EEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CceEEEEEeccccEE----EEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence 346678999766553 33555678899899876654433332 234558999866655555 55678999998765
Q ss_pred CCCcceEEEecCCccceEEEEEcCCCcEEEEEe-cC-CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec-
Q 024185 123 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TN-NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS- 199 (271)
Q Consensus 123 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d-~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 199 (271)
.. .............+++.|.+..|+.+. .. +.|..+++.... ...+.. ..-.....++++|++..|+.+.
T Consensus 149 ~~----~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~-~~~~~PnGla~d~~~~~lY~aD~ 222 (349)
T 3v64_C 149 HR----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIAD-THLFWPNGLTIDYAGRRMYWVDA 222 (349)
T ss_dssp SC----EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCC-SSCSCEEEEEEETTTTEEEEEET
T ss_pred ce----EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEE-CCCCCcceEEEeCCCCEEEEEEC
Confidence 43 333333345678999999665555544 34 789999876432 233321 1123467899998777666554
Q ss_pred CCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 200 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 200 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
..+.|..+|+........+........++++. ++.++++-. +.|..++..+++..
T Consensus 223 ~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 223 KHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp TTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred CCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCcc
Confidence 46789999986543333333333445778873 444444433 67888875555543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.72 E-value=6.5e-06 Score=64.37 Aligned_cols=210 Identities=8% Similarity=-0.001 Sum_probs=119.2
Q ss_pred eeEEeee-cceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhc-cC-ceEEEEEecCcceeEEE
Q 024185 12 QALLFAR-QNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLT-TA-LEYGIFVLMLASFQGIL 88 (271)
Q Consensus 12 ~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~ 88 (271)
..++++. .++.+..++...+. ...+. ..+....+++.++++. +++.. .+ ..|..+|..+++.....
T Consensus 43 g~lyv~d~~~~~I~~~d~~g~~-----~~~~~-~~~~p~gia~~~dG~l-----~vad~~~~~~~v~~~d~~~g~~~~~~ 111 (306)
T 2p4o_A 43 GTIFVTNHEVGEIVSITPDGNQ-----QIHAT-VEGKVSGLAFTSNGDL-----VATGWNADSIPVVSLVKSDGTVETLL 111 (306)
T ss_dssp SCEEEEETTTTEEEEECTTCCE-----EEEEE-CSSEEEEEEECTTSCE-----EEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred CCEEEEeCCCCeEEEECCCCce-----EEEEe-CCCCceeEEEcCCCcE-----EEEeccCCcceEEEEcCCCCeEEEEE
Confidence 3444443 45666666543321 11122 2346778999999986 33332 22 24666777777654333
Q ss_pred ecCC---cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEE---------EecCCccceEEEEEcCCCcEEEEEe-
Q 024185 89 RLRG---RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF---------LVGGDTAEVCDIKFSNDGKSMLLTT- 155 (271)
Q Consensus 89 ~~~~---~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~- 155 (271)
.... ...++..+++..+++-..++.|+.+|..+++. ... ...........+ +|+++.|+.+.
T Consensus 112 ~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~---~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 112 TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG---SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE---EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred eCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE---eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 2221 12245555554444444588999999865421 011 000111234445 88887776654
Q ss_pred cCCeEEEEECCC-CeE--EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE--EecCCcceeEEEEE
Q 024185 156 TNNNIYVLDAYG-GEK--RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA--CWNGNIGVVACLKW 230 (271)
Q Consensus 156 ~d~~i~~~d~~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~ 230 (271)
..+.|..+|+.. ++. ...+.... ....++++++|++.++....+.|.++|.. ++... .+.......++++|
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~~~~---~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~ 262 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFVEQT---NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAF 262 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEESC---CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEE
T ss_pred CCCEEEEEEeCCCCCCCccEEEeccC---CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEE
Confidence 478999999864 321 11221111 24558999999987777778899999975 65532 33333345789999
Q ss_pred e---cCCcEEEEeC
Q 024185 231 A---PRRAMFVAAS 241 (271)
Q Consensus 231 s---~~~~~l~~~~ 241 (271)
. |+++.|+.++
T Consensus 263 ~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 263 GQTEGDCTAIYVVT 276 (306)
T ss_dssp CCSTTTTTEEEEEE
T ss_pred ecccCCCCEEEEEC
Confidence 8 8876665554
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.6e-06 Score=71.05 Aligned_cols=164 Identities=11% Similarity=0.027 Sum_probs=106.9
Q ss_pred ceEEEEEecCcceeEEEecC--C--------cce-EEEcCCCC---EEEEEecCCeEEEEeCCCCCCCcceEEEecCC--
Q 024185 72 LEYGIFVLMLASFQGILRLR--G--------RPT-VAFDQQGL---VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-- 135 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~--~--------~~~-~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-- 135 (271)
+.|..+|.++|+.+..++.. . .+. .....+|+ .++.++.+|.++++|.++++. +-...+...
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~--~w~~~~~~~~~ 349 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL--IVAEKVDPAVN 349 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE--EEEEESSTTCC
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCE--EeeecccCCcc
Confidence 36889999999988877642 1 122 22334674 567788899999999998875 212222110
Q ss_pred --------c-cce--------------------------EEEEEcCCCcEEEEEe-------------------------
Q 024185 136 --------T-AEV--------------------------CDIKFSNDGKSMLLTT------------------------- 155 (271)
Q Consensus 136 --------~-~~v--------------------------~~~~~s~~~~~l~~~~------------------------- 155 (271)
. .++ ..++++|+..++++.+
T Consensus 350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence 0 011 2457888877776654
Q ss_pred ------------cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcc
Q 024185 156 ------------TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG 223 (271)
Q Consensus 156 ------------~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 223 (271)
.++.+..||+.+++.+.++..... +....+...+..++.++.||.++.+|.++++.+.+++....
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~---~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 506 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA---AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG 506 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC---ccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCC
Confidence 247899999999998887764432 22222233456777899999999999999999988864332
Q ss_pred e-eEEEEEecCCcEEEEe
Q 024185 224 V-VACLKWAPRRAMFVAA 240 (271)
Q Consensus 224 ~-v~~~~~s~~~~~l~~~ 240 (271)
. -.-+.+..+|+.++..
T Consensus 507 ~~~~p~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 507 GIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp CCSCCEEEEETTEEEEEE
T ss_pred cEeeeEEEEECCEEEEEE
Confidence 1 1224456788755544
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-05 Score=62.70 Aligned_cols=176 Identities=7% Similarity=-0.010 Sum_probs=110.1
Q ss_pred cCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC
Q 024185 70 TALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 147 (271)
Q Consensus 70 ~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 147 (271)
....|+..+++.......+... ....++|++.++.|+.+ ...+.|+.+++..... .............+++.+.
T Consensus 51 ~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----~~~~~~~~~~p~glavd~~ 126 (349)
T 3v64_C 51 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----EEVVSTGLESPGGLAVDWV 126 (349)
T ss_dssp CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSSCSCCCEEEEETT
T ss_pred cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc----eEEEeCCCCCccEEEEecC
Confidence 3455777777655544444333 34559999877666655 4568899999887653 2222222345678899985
Q ss_pred CcEE-EEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec-CC-CcEEEEEcCCceeEEEe-cCCcc
Q 024185 148 GKSM-LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-GD-GTLHAWNINTRNEVACW-NGNIG 223 (271)
Q Consensus 148 ~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~iwd~~~~~~~~~~-~~~~~ 223 (271)
+..| ++-...+.|.+.++........+.... .....++++|.+..|+... .. +.|...++.. .....+ ...-.
T Consensus 127 ~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l--~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~ 203 (349)
T 3v64_C 127 HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL--EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIADTHLF 203 (349)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECTTC--SCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEESCCSSCS
T ss_pred CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCC--CCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEEEECCCC
Confidence 5445 454557899999986543222222221 2367899999766665544 34 7888888764 333333 22334
Q ss_pred eeEEEEEecCCcEEEEeC---CeEEEEcCCCC
Q 024185 224 VVACLKWAPRRAMFVAAS---SVLSFWIPNPS 252 (271)
Q Consensus 224 ~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~ 252 (271)
..+.++++|++..|..+. +.|..++++..
T Consensus 204 ~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 204 WPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 568999999777666654 67999998754
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.2e-05 Score=61.38 Aligned_cols=193 Identities=10% Similarity=0.001 Sum_probs=114.0
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEEecC--CeEEEEeCCCC
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVAMEA--GAIKLFDSRSY 122 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~ 122 (271)
.....++++++++. +++...++.|..||.+.. ....+.... ...+++.++++++++.... ..|..+|..++
T Consensus 32 ~~pegia~~~~g~l-----yv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g 105 (306)
T 2p4o_A 32 TFLENLASAPDGTI-----FVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG 105 (306)
T ss_dssp CCEEEEEECTTSCE-----EEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred CCcceEEECCCCCE-----EEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC
Confidence 34556899998886 455567888999988653 333333333 4459999999965554332 24777787766
Q ss_pred CCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE-EEEeec-------CCCCCceeeEEECCCCCE
Q 024185 123 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-RCGFSL-------EPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 123 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~-------~~~~~~v~~~~~~~~~~~ 194 (271)
+. ....... .......++..+++..+++-..++.|+.+|..+++. +..... .........+ +|++++
T Consensus 106 ~~--~~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 106 TV--ETLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp CE--EEEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred eE--EEEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 63 1112221 122234455556555444444588999999876532 211110 0111123344 788876
Q ss_pred EEEe-cCCCcEEEEEcCC-cee--EEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 195 VVSG-SGDGTLHAWNINT-RNE--VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 195 l~~~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
|+.+ ...+.|..+|+.. ++. ...+.. ......++++++|+++++.. +.|.+++..
T Consensus 181 lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 181 LYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred EEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 6655 4568899999864 321 112211 12356789999998766654 779999976
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.65 E-value=7.5e-05 Score=58.70 Aligned_cols=228 Identities=12% Similarity=-0.015 Sum_probs=132.5
Q ss_pred EEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee-EEEec--
Q 024185 14 LLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ-GILRL-- 90 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~-- 90 (271)
|+|+. ...+..++......... ..... ......+.|.+.+..+ +.+-...+.|..++.+.+... ..+..
T Consensus 7 ll~~~-~~~I~~i~l~~~~~~~~--~~~~~-~~~~~~ld~d~~~~~l----yw~D~~~~~I~r~~~~g~~~~~~~~~~~l 78 (318)
T 3sov_A 7 LLYAN-RRDLRLVDATNGKENAT--IVVGG-LEDAAAVDFVFSHGLI----YWSDVSEEAIKRTEFNKTESVQNVVVSGL 78 (318)
T ss_dssp EEEEC-EEEEEEEETTCTTSCCE--EEEEE-EEEEEEEEEEGGGTEE----EEEETTTTEEEEEETTSSSCCCEEEEECC
T ss_pred EEEEc-cCeEEEEECCCCceEEE--EEecC-CCccEEEEEEeCCCEE----EEEECCCCcEEEEEccCCCceEEEEcCCC
Confidence 44443 55666666544321111 11111 2345568888865543 345566788988988765422 12222
Q ss_pred CCcceEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe--cCCeEEEEECCC
Q 024185 91 RGRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYG 167 (271)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~ 167 (271)
.....+++.+.+..|+.+ ...+.|.++++..... .............+++.|.+..|+.+. ..+.|...++..
T Consensus 79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~----~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 154 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR----KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG 154 (318)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE----EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence 234558998766555554 5567999999876543 222323445678999999766666555 357898888753
Q ss_pred CeEEEEeecCCCCCceeeEEECCCCCEEEEe-cCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 168 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSG-SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
. ....+... .-.....++++|++..|+.+ +..+.|..+|+..........+......++++..+ .++.+-. +.|
T Consensus 155 ~-~~~~~~~~-~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V 231 (318)
T 3sov_A 155 S-SRFIIINS-EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSI 231 (318)
T ss_dssp C-SCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT-EEEEEETTTTEE
T ss_pred C-CeEEEEEC-CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC-EEEEEecCCCeE
Confidence 3 22333211 11336789999977766655 44678999998643332223323344567777533 3333432 779
Q ss_pred EEEcCCCCCCCc
Q 024185 245 SFWIPNPSSNST 256 (271)
Q Consensus 245 ~iw~~~~~~~~~ 256 (271)
..++..+++...
T Consensus 232 ~~~~~~~G~~~~ 243 (318)
T 3sov_A 232 LACNKYTGEGLR 243 (318)
T ss_dssp EEEETTTCCSCE
T ss_pred EEEECCCCCceE
Confidence 999987776543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.8e-05 Score=64.02 Aligned_cols=177 Identities=7% Similarity=-0.033 Sum_probs=110.4
Q ss_pred cCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC
Q 024185 70 TALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 147 (271)
Q Consensus 70 ~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 147 (271)
....|+..++............ ....++|++.++.|+.+ ..++.|+.+++..... ...+.........+++.+.
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----~~~~~~~~~~p~glavd~~ 169 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----EEVVSTGLESPGGLAVDWV 169 (386)
T ss_dssp CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE----EEEECSSCSCCCCEEEETT
T ss_pred cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc----EEEEeCCCCCccEEEEEeC
Confidence 4456777777665544444433 34459999876666655 4567899999886552 2222222334567888885
Q ss_pred CcEE-EEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-C-CcEEEEEcCCceeEEEecCCcce
Q 024185 148 GKSM-LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-D-GTLHAWNINTRNEVACWNGNIGV 224 (271)
Q Consensus 148 ~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~ 224 (271)
+..| ++-...+.|.+.++........+.... .....++++|.+.+|+.... . +.|..+++............-..
T Consensus 170 ~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l--~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~ 247 (386)
T 3v65_B 170 HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL--EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW 247 (386)
T ss_dssp TTEEEEEETTTTEEEECBTTSCSCEEEECSSC--SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSC
T ss_pred CCeEEEEcCCCCeEEEEeCCCCceEEeecCCC--CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCC
Confidence 5545 444557889999876443222222221 23678999997776665543 3 67888887643333333333345
Q ss_pred eEEEEEecCCcEEEEeC---CeEEEEcCCCC
Q 024185 225 VACLKWAPRRAMFVAAS---SVLSFWIPNPS 252 (271)
Q Consensus 225 v~~~~~s~~~~~l~~~~---~~v~iw~~~~~ 252 (271)
.+.++|+|++..|..+. +.|..++++..
T Consensus 248 PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 248 PNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred eeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 68999998776666654 67999998754
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.62 E-value=5.2e-05 Score=61.63 Aligned_cols=183 Identities=8% Similarity=-0.037 Sum_probs=113.3
Q ss_pred ccCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC
Q 024185 69 TTALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN 146 (271)
Q Consensus 69 ~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 146 (271)
+....|+..+++........... ....++|++.++.|+.+ ..++.|+.+++......................+++.+
T Consensus 89 ~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~ 168 (400)
T 3p5b_L 89 TNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 168 (400)
T ss_dssp EETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEET
T ss_pred eccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEe
Confidence 34466777777665544444433 34559999877766666 45678999998753210011222333345678899998
Q ss_pred C-CcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC--CCcEEEEEcCCceeEEEecCCcc
Q 024185 147 D-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG--DGTLHAWNINTRNEVACWNGNIG 223 (271)
Q Consensus 147 ~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~ 223 (271)
. ++++++-...+.|.+.++........+.... .....++++|.+.+|+.... .+.|...++............-.
T Consensus 169 ~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~--~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~ 246 (400)
T 3p5b_L 169 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG--SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 246 (400)
T ss_dssp TTTEEEEEETTTTEEEEECTTTCSEEEEEECSS--CCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCS
T ss_pred cCCceEEEECCCCeEEEEeCCCCceEEEEeCCC--CCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCC
Confidence 4 4444555567899999987554333333222 23778999997766665542 47899998864443333333335
Q ss_pred eeEEEEEecCCcEEEEeC---CeEEEEcCCCCC
Q 024185 224 VVACLKWAPRRAMFVAAS---SVLSFWIPNPSS 253 (271)
Q Consensus 224 ~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~ 253 (271)
....|+++|++..|..+. +.|..+|++...
T Consensus 247 ~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 247 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 279 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence 678999999877776665 679999987644
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.6e-06 Score=74.15 Aligned_cols=151 Identities=13% Similarity=0.098 Sum_probs=94.4
Q ss_pred ceEEEc-CCCCEEEEEec-CC----eEEEEeCCCC-CCCcceEEEecCCccceEEEEEcCCCcEEEEEecC-----CeEE
Q 024185 94 PTVAFD-QQGLVFAVAME-AG----AIKLFDSRSY-DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIY 161 (271)
Q Consensus 94 ~~~~~~-~~~~~l~~~~~-d~----~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~ 161 (271)
...+|| |||++|+.+.. +| .|+++|+.++ +. +.. .+ ......++|+|||+.|+....+ ..|+
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~-~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IAD-KV---SGTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCC-CE---EEECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCc-cc---cCceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 348999 99998887643 23 5999999987 53 111 11 1123568899999988887765 3688
Q ss_pred EEECCCCeE--EEEeecCCCCCceeeEEECCCCCEEEEecC---CCcEEEEEcCCce-eE--EEe-cCCcceeEEEEEec
Q 024185 162 VLDAYGGEK--RCGFSLEPSPNTNTEATFTPDGQYVVSGSG---DGTLHAWNINTRN-EV--ACW-NGNIGVVACLKWAP 232 (271)
Q Consensus 162 ~~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~--~~~-~~~~~~v~~~~~s~ 232 (271)
.+++.+++. ...+..... .....+.|+|||++|+..+. ...|+++|+.++. .. ..+ ........++.|+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNP-LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp EEETTSCGGGCEEEEECCCT-TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred EEECCCCchhcEEEEecCCC-ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence 889877642 222322222 23567899999999886553 3468889988752 22 333 33344455566554
Q ss_pred CCcEEEEeC-C-----eEEEEcCCC
Q 024185 233 RRAMFVAAS-S-----VLSFWIPNP 251 (271)
Q Consensus 233 ~~~~l~~~~-~-----~v~iw~~~~ 251 (271)
++.+++.+. + .|..+++.+
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 444444443 2 466777654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=9.2e-05 Score=58.13 Aligned_cols=226 Identities=10% Similarity=-0.031 Sum_probs=130.5
Q ss_pred EEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC----cceeEEEe
Q 024185 14 LLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML----ASFQGILR 89 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~ 89 (271)
|+|+. ...+..++....... .... .......+++++.+..+ +++-...+.|..++++. ......+.
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~----~~~~-~~~~p~g~~~d~~~~~l----y~~D~~~~~I~~~~~~g~~~~~~~~~~~~ 73 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYT----SLIP-NLRNVVALDTEVASNRI----YWSDLSQRMICSTQLDRAHGVSSYDTVIS 73 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCE----EEEC-SCSSEEEEEEETTTTEE----EEEETTTTEEEEEEC--------CEEEEC
T ss_pred EEEEC-CCeEEEEECCCcceE----ehhc-CCCceEEEEEEeCCCEE----EEEECCCCcEEEEECCCCCCCcccEEEEe
Confidence 34443 445666665444211 1122 23445678999876543 34556678999999875 22222232
Q ss_pred c--CCcceEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-C-CeEEEEE
Q 024185 90 L--RGRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N-NNIYVLD 164 (271)
Q Consensus 90 ~--~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d-~~i~~~d 164 (271)
. .....+++.+.+..|+.+ ..++.|.+++...... .............+++.|.+..|+.+.. . +.|..++
T Consensus 74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~----~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce----EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence 2 234568998766555555 5678999999875432 2222223356789999996666655544 3 6888888
Q ss_pred CCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec-CCCcEEEEEcCCceeEEEec--CCcceeEEEEEecCCcEEEEeC
Q 024185 165 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRNEVACWN--GNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
+. ++....+... .-.....++++|++..|+.+. ..+.|..+|+.......... .......++++. ++.++++..
T Consensus 150 ~d-G~~~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~ 226 (316)
T 1ijq_A 150 LN-GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDI 226 (316)
T ss_dssp TT-SCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEET
T ss_pred CC-CCCeEEEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEEC
Confidence 75 3333333211 123467899999877776554 46789999986432222222 122335677775 344444443
Q ss_pred --CeEEEEcCCCCCCCc
Q 024185 242 --SVLSFWIPNPSSNST 256 (271)
Q Consensus 242 --~~v~iw~~~~~~~~~ 256 (271)
+.|..++..+++...
T Consensus 227 ~~~~V~~~~~~~g~~~~ 243 (316)
T 1ijq_A 227 INEAIFSANRLTGSDVN 243 (316)
T ss_dssp TTTEEEEEETTTCCCCE
T ss_pred CCCeEEEEeCCCCcceE
Confidence 778888887665443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.58 E-value=7.3e-06 Score=67.32 Aligned_cols=149 Identities=15% Similarity=0.167 Sum_probs=96.5
Q ss_pred ceEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC-C----eEEEEECCC
Q 024185 94 PTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-N----NIYVLDAYG 167 (271)
Q Consensus 94 ~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~----~i~~~d~~~ 167 (271)
..++++| ++..|+++...+.|+.+|+..... ..+.........++|+++|++|+++... + .+..++. .
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-----~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-----STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEE-----EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEE-----EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-C
Confidence 4589998 466677776668899999887653 2222244568899999999977666541 1 3444443 2
Q ss_pred CeEE--EEeecCCCCCceeeEEECC-CCCEEEEecCCCcEEEEEcCCceeEEEec-CCcceeEEEEEecCCcEEEEeC--
Q 024185 168 GEKR--CGFSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGVVACLKWAPRRAMFVAAS-- 241 (271)
Q Consensus 168 ~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-- 241 (271)
+... ..+..... ...++++| +|.++++-..++.|..++...+....... +.......++|+|+|++|..+.
T Consensus 214 g~~~~~~~l~~~~~---p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 214 SGFKVITELTKGQN---CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp GTSCSEEEEEECSS---CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred CceeeeeeeccCCC---ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 3221 22222222 45688999 67766666678899999998766422221 1223467899999999655553
Q ss_pred -CeEEEEcCCC
Q 024185 242 -SVLSFWIPNP 251 (271)
Q Consensus 242 -~~v~iw~~~~ 251 (271)
+.|..++.+.
T Consensus 291 ~~~I~~~~~d~ 301 (430)
T 3tc9_A 291 QHYILRSDYDW 301 (430)
T ss_dssp TTEEEEEEEET
T ss_pred CCEEEEEeCCc
Confidence 7788887653
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.57 E-value=0.00015 Score=58.98 Aligned_cols=226 Identities=11% Similarity=-0.037 Sum_probs=129.5
Q ss_pred EeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc----ceeEEEec
Q 024185 15 LFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA----SFQGILRL 90 (271)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~ 90 (271)
++......+..++....... . +.........++|++.+..+ +++-...+.|+.++++.. .....+..
T Consensus 86 ll~~~~~~I~~i~l~~~~~~----~-~~~~~~~~~~l~~d~~~~~l----ywsD~~~~~I~~~~~~g~~~~~~~~~~~~~ 156 (400)
T 3p5b_L 86 LFFTNRHEVRKMTLDRSEYT----S-LIPNLRNVVALDTEVASNRI----YWSDLSQRMICSTQLDRAHGVSSYDTVISR 156 (400)
T ss_dssp EEEEETTEEEEECTTSCSCE----E-EECSCSCEEEEEEETTTTEE----EEEETTTTEEEEEEC------CCCEEEECS
T ss_pred eEEeccceeEEEccCCccee----E-eccccCcceEEeeeeccCce----EEEecCCCeEEEEEcccCCCCCcceEEEeC
Confidence 33333456666655433211 1 12234456679999866553 335556788888888652 22222221
Q ss_pred --CCcceEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec--CCeEEEEEC
Q 024185 91 --RGRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT--NNNIYVLDA 165 (271)
Q Consensus 91 --~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~ 165 (271)
.....+++.+.++.|+.+ ...+.|.+.++..... ...+.........+++.|.+.+|+.+.. .+.|...++
T Consensus 157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~----~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE----EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce----EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence 234458998855555555 5577899999876542 2223333455789999996666665542 478999887
Q ss_pred CCCeEEEEeecCCCCCceeeEEECCCCCEEEEec-CCCcEEEEEcCCceeEEEecC--CcceeEEEEEecCCcEEEEeC-
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRNEVACWNG--NIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~- 241 (271)
..... ..+... .-.....++++|++..|+.+. ..+.|..+|+........... .-....++++. .+.++.+..
T Consensus 233 dG~~~-~~~~~~-~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~ 309 (400)
T 3p5b_L 233 NGVDI-YSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDII 309 (400)
T ss_dssp TSCSC-EEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESS
T ss_pred CCCcc-EEEEEC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCC
Confidence 64332 333211 113477899999887777664 467899999864433332222 12334567763 333444433
Q ss_pred -CeEEEEcCCCCCCCc
Q 024185 242 -SVLSFWIPNPSSNST 256 (271)
Q Consensus 242 -~~v~iw~~~~~~~~~ 256 (271)
+.|..+|..+++...
T Consensus 310 ~~~V~~~~~~~G~~~~ 325 (400)
T 3p5b_L 310 NEAIFSANRLTGSDVN 325 (400)
T ss_dssp SCSEEEEESSSCCCCE
T ss_pred CCeEEEEEcCCCCceE
Confidence 668888876665543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.57 E-value=7e-05 Score=66.34 Aligned_cols=227 Identities=11% Similarity=-0.002 Sum_probs=136.7
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe--
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR-- 89 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-- 89 (271)
..+.++..++.+..++...+..... ..........|.++...+++.. ..|+.++-+..+|.++++......
T Consensus 374 g~lWigt~~~Gl~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~l------Wigt~~~Gl~~~~~~~~~~~~~~~~~ 446 (781)
T 3v9f_A 374 GKLWIGTDGGGINVFENGKRVAIYN-KENRELLSNSVLCSLKDSEGNL------WFGTYLGNISYYNTRLKKFQIIELEK 446 (781)
T ss_dssp SCEEEEEBSSCEEEEETTEEEEECC------CCCSBEEEEEECTTSCE------EEEETTEEEEEECSSSCEEEECCSTT
T ss_pred CCEEEEeCCCcEEEEECCCCeEEEc-cCCCCCCCcceEEEEECCCCCE------EEEeccCCEEEEcCCCCcEEEeccCC
Confidence 4566666556666666533311100 0000223456788887777774 345666778888887765433221
Q ss_pred --cCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecC----CccceEEEEEcCCCcEEEEEecCCeEEEE
Q 024185 90 --LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG----DTAEVCDIKFSNDGKSMLLTTTNNNIYVL 163 (271)
Q Consensus 90 --~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i~~~ 163 (271)
...+.++...++++ |..|+. +-+..||..+++. ....... ....|.++...++|. |..|+.++-+..|
T Consensus 447 ~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~---~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~ 520 (781)
T 3v9f_A 447 NELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKV---IHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIY 520 (781)
T ss_dssp TCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSC---CEEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEE
T ss_pred CCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeE---EecccCcccccccceeEEEEEcCCCC-EEEEEcCCCEEEE
Confidence 12355566676666 555555 5688999887654 1111111 135789999998887 5556654458889
Q ss_pred ECCCCeEEEEeecCC--CCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC----cceeEEEEEecCCcEE
Q 024185 164 DAYGGEKRCGFSLEP--SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN----IGVVACLKWAPRRAMF 237 (271)
Q Consensus 164 d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l 237 (271)
|..+++... +.... ....|.++..+++|++.+... +|.+..||..+++. ..+... ...|.++...++|++.
T Consensus 521 ~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW 597 (781)
T 3v9f_A 521 TPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIW 597 (781)
T ss_dssp CTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEE
T ss_pred eCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEE
Confidence 977665433 32211 124588888899998666544 66558898876654 333211 2357888889999988
Q ss_pred EEeCCeEEEEcCCCCCC
Q 024185 238 VAASSVLSFWIPNPSSN 254 (271)
Q Consensus 238 ~~~~~~v~iw~~~~~~~ 254 (271)
+++.+.+..|+.++++.
T Consensus 598 ~~t~~Gl~~~~~~~~~~ 614 (781)
T 3v9f_A 598 ASTNTGISCYITSKKCF 614 (781)
T ss_dssp EECSSCEEEEETTTTEE
T ss_pred EEcCCceEEEECCCCce
Confidence 87775577788766543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.55 E-value=9.4e-05 Score=65.50 Aligned_cols=230 Identities=10% Similarity=0.041 Sum_probs=136.8
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEE-----EcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIE-----FFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
..+.+++.++.+..++...+........ ........|.++...+++.. ..|+.++-+..||..++....
T Consensus 324 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l------Wigt~~~Gl~~~~~~~~~~~~ 397 (781)
T 3v9f_A 324 NNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL------WIGTDGGGINVFENGKRVAIY 397 (781)
T ss_dssp CCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE------EEEEBSSCEEEEETTEEEEEC
T ss_pred CCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE------EEEeCCCcEEEEECCCCeEEE
Confidence 4455666555666665443321111000 00112356888888877774 355666678889886654322
Q ss_pred EE-----ecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEe-cCCccceEEEEEcCCCcEEEEEecCCeE
Q 024185 87 IL-----RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV-GGDTAEVCDIKFSNDGKSMLLTTTNNNI 160 (271)
Q Consensus 87 ~~-----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i 160 (271)
.. ....+.++...++++ |.+|+.++-+..+|..+++. ..... ......|.++...++|. |..|+. +-+
T Consensus 398 ~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~---~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl 471 (781)
T 3v9f_A 398 NKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKF---QIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGV 471 (781)
T ss_dssp C-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEE---EECCSTTTCCCCEEEEEECTTSE-EEEEET-TEE
T ss_pred ccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcE---EEeccCCCCCCeEEEEEECCCCC-EEEEEC-Cce
Confidence 11 112345566666666 55577667799999876542 11111 11346789998888876 555555 568
Q ss_pred EEEECCCCeEEEEeecC---CCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecC----CcceeEEEEEecC
Q 024185 161 YVLDAYGGEKRCGFSLE---PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG----NIGVVACLKWAPR 233 (271)
Q Consensus 161 ~~~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~ 233 (271)
..||..+++........ .....+.++...++|++.+....+| +..+|..+++... +.. ....|.++...++
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~ 549 (781)
T 3v9f_A 472 FVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSK 549 (781)
T ss_dssp EEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTT
T ss_pred EEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCC
Confidence 99998776543332211 0124588899999998655443344 7788887665433 321 1346889999999
Q ss_pred CcEEEEeCCeE-EEEcCCCCCCC
Q 024185 234 RAMFVAASSVL-SFWIPNPSSNS 255 (271)
Q Consensus 234 ~~~l~~~~~~v-~iw~~~~~~~~ 255 (271)
|++.++..+-+ ..||..+++..
T Consensus 550 g~lWi~T~~Glv~~~d~~~~~~~ 572 (781)
T 3v9f_A 550 GQMWLATGEGLVCFPSARNFDYQ 572 (781)
T ss_dssp SCEEEEETTEEEEESCTTTCCCE
T ss_pred CCEEEEECCCceEEECCCCCcEE
Confidence 99777766555 88998876653
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.7e-05 Score=66.55 Aligned_cols=163 Identities=10% Similarity=-0.002 Sum_probs=103.6
Q ss_pred ceEEEEEecCcceeEEEecCC----------cce-EEEc-CCC---CEEEEEecCCeEEEEeCCCCCCCcceEEEecC--
Q 024185 72 LEYGIFVLMLASFQGILRLRG----------RPT-VAFD-QQG---LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG-- 134 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~~----------~~~-~~~~-~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-- 134 (271)
+.|.-+|.++|+.+..++... .+. +... .+| +.++.++.+|.++++|.++++. +-...+..
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~--lw~~~~~~~~ 355 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL--VSANKLDDTV 355 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE--EEEEESSTTC
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCE--eecccccCCc
Confidence 478999999999888776431 112 2232 567 4677788999999999999875 21111110
Q ss_pred ---------Cccc--------------------------eEEEEEcCCCcEEEEEe------------------------
Q 024185 135 ---------DTAE--------------------------VCDIKFSNDGKSMLLTT------------------------ 155 (271)
Q Consensus 135 ---------~~~~--------------------------v~~~~~s~~~~~l~~~~------------------------ 155 (271)
...+ -..++++|+..++++..
T Consensus 356 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 435 (599)
T 1w6s_A 356 NVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGAT 435 (599)
T ss_dssp CSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred ccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccc
Confidence 0001 12456777666555431
Q ss_pred ---------------cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecC
Q 024185 156 ---------------TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG 220 (271)
Q Consensus 156 ---------------~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 220 (271)
..|.+..||+.+++.+.+...... ...-.+...+..++.++.||.++.+|.++|+.+.+++.
T Consensus 436 ~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 436 LNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFA---VWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCC---ccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 347899999999998877653321 11111223566788899999999999999999988854
Q ss_pred Ccce-eEEEEEecCCcE-EEE
Q 024185 221 NIGV-VACLKWAPRRAM-FVA 239 (271)
Q Consensus 221 ~~~~-v~~~~~s~~~~~-l~~ 239 (271)
..+. ..-+.+..+|+. +++
T Consensus 513 ~~g~~~~P~~y~~~G~qyv~~ 533 (599)
T 1w6s_A 513 PSGAIGYPMTYTHKGTQYVAI 533 (599)
T ss_dssp SSCCCSCCEEEEETTEEEEEE
T ss_pred CCCcEeccEEEEeCCEEEEEE
Confidence 3321 123556678874 443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.8e-05 Score=67.55 Aligned_cols=164 Identities=13% Similarity=0.165 Sum_probs=105.5
Q ss_pred ceEEEEEecCcceeEEEec--CC--------cceE-EEc-CCCC---EEEEEecCCeEEEEeCCCCCCCcceEEEecCC-
Q 024185 72 LEYGIFVLMLASFQGILRL--RG--------RPTV-AFD-QQGL---VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD- 135 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~--~~--------~~~~-~~~-~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~- 135 (271)
+.|.-+|.++|+.+..++. |. .+.+ ... .+|+ .++.++.+|.++++|.++++. +-...+...
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~--lw~~~~~~~~ 368 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL--QNAFPFVDNI 368 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCE--EEEEESSSCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCE--ecccccccCc
Confidence 6899999999999888754 21 1222 222 4674 678889999999999998875 211111100
Q ss_pred ----------ccc--------------------------------eEEEEEcCCCcEEEEEe------------------
Q 024185 136 ----------TAE--------------------------------VCDIKFSNDGKSMLLTT------------------ 155 (271)
Q Consensus 136 ----------~~~--------------------------------v~~~~~s~~~~~l~~~~------------------ 155 (271)
..+ -..++++|+...+++..
T Consensus 369 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~ 448 (582)
T 1flg_A 369 TWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGS 448 (582)
T ss_dssp CSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTS
T ss_pred cccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCC
Confidence 000 01346677655555433
Q ss_pred ---------------cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecC
Q 024185 156 ---------------TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG 220 (271)
Q Consensus 156 ---------------~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 220 (271)
.+|.|..||+.+++.+.+...... ...-.....+..++.++.||.++.||.++|+.+.+++.
T Consensus 449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP---LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC---CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC---CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 257899999999998877664332 11111222456788899999999999999999998865
Q ss_pred Cccee-EEEEEecCCc-EEEEe
Q 024185 221 NIGVV-ACLKWAPRRA-MFVAA 240 (271)
Q Consensus 221 ~~~~v-~~~~~s~~~~-~l~~~ 240 (271)
..+.. .-+.|..+|+ |+++.
T Consensus 526 ~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 526 GSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp SSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCcccCceEEEECCEEEEEEE
Confidence 43322 2366778887 44443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.5e-05 Score=62.67 Aligned_cols=191 Identities=12% Similarity=0.045 Sum_probs=110.2
Q ss_pred EEeeEEecC---CchhhhhhhhhhccCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecCC-----eEEEEe
Q 024185 48 RRGLFLSAC---LQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEAG-----AIKLFD 118 (271)
Q Consensus 48 v~~~~~s~~---~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~-----~i~i~d 118 (271)
-..++++|+ +.. +++ ...+.|+.+|..+++........ ....++++++++ |+++...+ .+...+
T Consensus 141 P~gvavd~~s~~g~L-----yv~-D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDL-----YWV-GQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCEEEECTTTTTCEE-----EEE-CBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred CceEEEccccCCCEE-----EEE-eCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence 446788874 443 222 22288999998777655444322 355699999999 55554321 233344
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEE
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
....... ...+. .......++++| +|.++++-..++.|+.+|..+++....+........-..++|+|++++|+.
T Consensus 214 ~~~~~~~---~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYv 289 (433)
T 4hw6_A 214 RASGFTE---RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYI 289 (433)
T ss_dssp GGGTTCC---EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEE
T ss_pred CCCCeec---ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEE
Confidence 3322210 11111 223456788999 666555555678999999887765333322222222346999999995554
Q ss_pred e-cCCCcEEEEEcC--Ccee--EEEecCC---------------cceeEEEEE---------ecCCcEEEEeC--CeEEE
Q 024185 198 G-SGDGTLHAWNIN--TRNE--VACWNGN---------------IGVVACLKW---------APRRAMFVAAS--SVLSF 246 (271)
Q Consensus 198 ~-~~dg~i~iwd~~--~~~~--~~~~~~~---------------~~~v~~~~~---------s~~~~~l~~~~--~~v~i 246 (271)
+ ...+.|+.++.. ++.. ...+.+. -.....+++ .++|+++++-. +.|+.
T Consensus 290 ad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~ 369 (433)
T 4hw6_A 290 IYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRV 369 (433)
T ss_dssp EETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEE
T ss_pred EeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEE
Confidence 4 456789998865 2321 1122111 113567898 66777666554 67888
Q ss_pred EcC
Q 024185 247 WIP 249 (271)
Q Consensus 247 w~~ 249 (271)
++.
T Consensus 370 ~~~ 372 (433)
T 4hw6_A 370 LTP 372 (433)
T ss_dssp ECT
T ss_pred ECC
Confidence 885
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.45 E-value=7.8e-05 Score=61.21 Aligned_cols=153 Identities=8% Similarity=0.041 Sum_probs=92.2
Q ss_pred EEeeEEec-CCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEEecC-C----eEEEEeCC
Q 024185 48 RRGLFLSA-CLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVAMEA-G----AIKLFDSR 120 (271)
Q Consensus 48 v~~~~~s~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d-~----~i~i~d~~ 120 (271)
...++++| ++.. |..+...+.|+.+|++++.......... ...+++++++++|+++... + .+..++..
T Consensus 139 P~~lavdp~~~g~-----Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 139 AVWLSFDPKNHNH-----LYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCEEEEETTEEEE-----EEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCEEEECCCCCCe-----EEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 35578887 3443 2222333888889987766544443333 4459999999977776542 1 34444433
Q ss_pred CCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEe-
Q 024185 121 SYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG- 198 (271)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 198 (271)
+..... ..+. .......++++| ++..+++-..++.|..++...+.......... ......++|+|+|++|+.+
T Consensus 214 -g~~~~~--~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~-~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 214 -SGFKVI--TELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD-SGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp -GTSCSE--EEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS-SSCCEEEEECTTSSEEEEEE
T ss_pred -Cceeee--eeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC-CCcceeEEEcCCCCEEEEEE
Confidence 322111 1111 123456788999 66655555568899999988776433222221 1236679999999955544
Q ss_pred cCCCcEEEEEcC
Q 024185 199 SGDGTLHAWNIN 210 (271)
Q Consensus 199 ~~dg~i~iwd~~ 210 (271)
...+.|..++..
T Consensus 289 ~~~~~I~~~~~d 300 (430)
T 3tc9_A 289 VNQHYILRSDYD 300 (430)
T ss_dssp TTTTEEEEEEEE
T ss_pred CCCCEEEEEeCC
Confidence 557889998765
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00047 Score=60.83 Aligned_cols=199 Identities=10% Similarity=-0.054 Sum_probs=118.6
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc----ceeEEEe--cCCcceEEEcCCCCEEEEE-ecCCeEEEE
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA----SFQGILR--LRGRPTVAFDQQGLVFAVA-MEAGAIKLF 117 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~--~~~~~~~~~~~~~~~l~~~-~~d~~i~i~ 117 (271)
......+++.+....+ +++-...+.|+.+++... .....+. ......+++.+.++.|+.+ ...+.|.+.
T Consensus 423 ~~~~~gl~~d~~~~~l----Y~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 423 LRNVVALDTEVASNRI----YWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp CSSEEEEEEETTTTEE----EEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEeecccCCee----EEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 3445668888855543 345566788888888643 2222232 1234559999888666665 556799999
Q ss_pred eCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec--CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEE
Q 024185 118 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV 195 (271)
Q Consensus 118 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 195 (271)
++..... ...+.........|++.|.+.+|+.+.. .+.|...++..... ..+... .-.....+++++.+..|
T Consensus 499 ~ldG~~~----~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~~-~l~~P~GLavD~~~~~L 572 (791)
T 3m0c_C 499 DTKGVKR----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTE-NIQWPNGITLDLLSGRL 572 (791)
T ss_dssp ETTSSSE----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECS-SCSCEEEEEEETTTTEE
T ss_pred eCCCCeE----EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEEeC-CCCCceEEEEecCCCeE
Confidence 9876542 2222233456889999997666665543 37899999864433 333222 21347789999877777
Q ss_pred EEec-CCCcEEEEEcCCceeEEEecCC--cceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCCC
Q 024185 196 VSGS-GDGTLHAWNINTRNEVACWNGN--IGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNS 255 (271)
Q Consensus 196 ~~~~-~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~~ 255 (271)
+.+. ..+.|...++........+... -....+|++. +..|+.+. +.|...+..+++..
T Consensus 573 YwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 573 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred EEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcce
Confidence 7664 4578999998644433333321 1223466664 33444443 66777776666443
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.40 E-value=5.7e-05 Score=65.55 Aligned_cols=185 Identities=13% Similarity=0.038 Sum_probs=107.3
Q ss_pred eEEecCCchhhhhhhhhhc-cCceEEEEEecCcceeEEEecC--C-cceEEEcCCCCEEEEEe-cC-----CeEEEEeCC
Q 024185 51 LFLSACLQLMIALCLVLLT-TALEYGIFVLMLASFQGILRLR--G-RPTVAFDQQGLVFAVAM-EA-----GAIKLFDSR 120 (271)
Q Consensus 51 ~~~s~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~~~-~d-----~~i~i~d~~ 120 (271)
.++.++++. ++.|+ .+..+.+||..+++....-..+ . ...++..++++.++.|+ .+ ..+.+||..
T Consensus 248 ~~~~~~g~l-----yv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 248 ISMDGNGQI-----VVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp EEECTTSCE-----EEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ccCCCCCCE-----EEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 556677877 55666 4568999999877644332222 1 23366677999888887 34 468999987
Q ss_pred CCCCCcc--------eE-------------EEecCCcc---------------------------------------ceE
Q 024185 121 SYDKGPF--------DT-------------FLVGGDTA---------------------------------------EVC 140 (271)
Q Consensus 121 ~~~~~~~--------~~-------------~~~~~~~~---------------------------------------~v~ 140 (271)
+.+...+ .. +.+.+..+ .-.
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~ 402 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 402 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence 6542110 00 00000000 112
Q ss_pred EEEEcC-CCcEEEEEecCC-----------eEEEEECCCCeEEEEe--ecCCCCCceeeEEECCCCCEEEEecCC-----
Q 024185 141 DIKFSN-DGKSMLLTTTNN-----------NIYVLDAYGGEKRCGF--SLEPSPNTNTEATFTPDGQYVVSGSGD----- 201 (271)
Q Consensus 141 ~~~~s~-~~~~l~~~~~d~-----------~i~~~d~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 201 (271)
++.|.. +++.++.|+.++ .+.+||..+.+-.... ..... ..-.+....|+++.++.|+.+
T Consensus 403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~-R~~~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA-RTFHTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC-CBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCC-cccCCeEECCCCCEEEECCcccCcCc
Confidence 333333 677777777532 6788888776544332 11111 122345677899999999864
Q ss_pred ------CcEEEEEcCCceeEEE--ecCCcceeEEEEEecCCcEEEEeC
Q 024185 202 ------GTLHAWNINTRNEVAC--WNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 202 ------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
..+.+||..+++-... +...........+.|||++++.|+
T Consensus 482 ~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp CCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred CCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCC
Confidence 4689999987654321 111122223445678999999987
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00024 Score=55.77 Aligned_cols=179 Identities=10% Similarity=-0.013 Sum_probs=108.6
Q ss_pred ccCceEEEEEecCcc--eeEEEec-CCcceEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEE
Q 024185 69 TTALEYGIFVLMLAS--FQGILRL-RGRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF 144 (271)
Q Consensus 69 ~~dg~i~iwd~~~~~--~~~~~~~-~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (271)
+....|+..+++... ....+.. .....++|++.++.|+.+ ..++.|+.++....... ... +.........+++
T Consensus 10 ~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~--~~~-~~~~l~~p~glav 86 (318)
T 3sov_A 10 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--QNV-VVSGLLSPDGLAC 86 (318)
T ss_dssp ECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC--CEE-EEECCSCCCEEEE
T ss_pred EccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce--EEE-EcCCCCCccEEEE
Confidence 345678888887653 2222222 234458999866656555 55678999998765420 111 1112235667889
Q ss_pred cCCC-cEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec--CCCcEEEEEcCCceeEEEecCC
Q 024185 145 SNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS--GDGTLHAWNINTRNEVACWNGN 221 (271)
Q Consensus 145 s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~ 221 (271)
.+.+ +.+++-...+.|.++++.... ...+.. ........++++|.+.+|+.+. ..+.|...++............
T Consensus 87 d~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~-~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~ 164 (318)
T 3sov_A 87 DWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 164 (318)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC-SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred EcCCCeEEEEECCCCEEEEEECCCCc-EEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECC
Confidence 8754 444554567899999986443 233321 1113367899999766666554 3578888887533322222223
Q ss_pred cceeEEEEEecCCcEEEEeC---CeEEEEcCCCC
Q 024185 222 IGVVACLKWAPRRAMFVAAS---SVLSFWIPNPS 252 (271)
Q Consensus 222 ~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~ 252 (271)
-...+.++++|++..|..+. +.|..+|++..
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~ 198 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 198 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence 34568999999777666664 77999998753
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00055 Score=60.40 Aligned_cols=182 Identities=8% Similarity=-0.043 Sum_probs=109.5
Q ss_pred CceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC
Q 024185 71 ALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 148 (271)
...|+..++............ ....+++++.+..|+.+ ...+.|+.+++............+.........|++.+.+
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~ 482 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 482 (791)
T ss_dssp BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC
Confidence 345666666555444444333 34458998866656555 4567898888875321001122333334567789999877
Q ss_pred cEEEEE-ecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC--CCcEEEEEcCCceeEEEecCCccee
Q 024185 149 KSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG--DGTLHAWNINTRNEVACWNGNIGVV 225 (271)
Q Consensus 149 ~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v 225 (271)
..|+.+ ...+.|.+.++..... ..+.... ......++++|.+.+|+.+.. .+.|...++........+...-...
T Consensus 483 ~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~-l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P 560 (791)
T 3m0c_C 483 SNIYWTDSVLGTVSVADTKGVKR-KTLFREN-GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 560 (791)
T ss_dssp TEEEEEETTTTEEEEEETTSSSE-EEEEECT-TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred CcEEEEecCCCeEEEEeCCCCeE-EEEEeCC-CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCc
Confidence 555544 5578999999875443 3332211 123778999998666666543 3678888886444433344333567
Q ss_pred EEEEEecCCcEEEEeC---CeEEEEcCCCCCC
Q 024185 226 ACLKWAPRRAMFVAAS---SVLSFWIPNPSSN 254 (271)
Q Consensus 226 ~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~ 254 (271)
..|++++.+..|+.+. +.|...+++....
T Consensus 561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 561 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 592 (791)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred eEEEEecCCCeEEEEeCCCCcEEEEecCCCce
Confidence 8999998777666664 6688888866543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00012 Score=57.10 Aligned_cols=155 Identities=10% Similarity=0.185 Sum_probs=104.7
Q ss_pred cceEEEcCCCCEEEEEe-cCCeEEEEeCCCCCCCcceEEEecC----C--ccceEEEEE---cCCCcEEEEEec------
Q 024185 93 RPTVAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLVGG----D--TAEVCDIKF---SNDGKSMLLTTT------ 156 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~----~--~~~v~~~~~---s~~~~~l~~~~~------ 156 (271)
..+..|++....|+.++ .+++|..||...+.. ....+.+ . ...+..+.| .|+++++++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~---~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH---FNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCE---EEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE---EEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 34589988666666665 789999999975542 1222222 1 124578999 688777775432
Q ss_pred -------CCeEEEEECC---CCeEEEEeecC----C-------CCCceeeEEECCCCCEEEEecCC-CcEEEEEcCCcee
Q 024185 157 -------NNNIYVLDAY---GGEKRCGFSLE----P-------SPNTNTEATFTPDGQYVVSGSGD-GTLHAWNINTRNE 214 (271)
Q Consensus 157 -------d~~i~~~d~~---~~~~~~~~~~~----~-------~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~ 214 (271)
+..+..||+. +++.+...... . .......++..++|+..++++.. +.|...+... +.
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-KT 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-CC
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-CE
Confidence 6789999999 78776654421 0 11237789999999998888887 8877777653 33
Q ss_pred EEEe--cC----CcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 215 VACW--NG----NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 215 ~~~~--~~----~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
+..+ .. .....+.++++|+|+.|+... +.+..+|+..
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 3322 11 122357999999999888775 8899999873
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00016 Score=59.44 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=91.0
Q ss_pred ceEEEcCC--CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC----C-eEEEEECC
Q 024185 94 PTVAFDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN----N-NIYVLDAY 166 (271)
Q Consensus 94 ~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~-~i~~~d~~ 166 (271)
..++++|+ +..|+.+...+.|+.+|..+++. ..+.........++++++|+ |+.+... . .+...+..
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v-----~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV-----DIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTTTEE-----EEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCCCEE-----EEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence 34899985 45566665558899999977663 23333445689999999999 5555432 1 23333322
Q ss_pred CCeE-EEEeecCCCCCceeeEEECC-CCCEEEEecCCCcEEEEEcCCceeEEEe-c-CCcceeEEEEEecCCcEEEEeC-
Q 024185 167 GGEK-RCGFSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNEVACW-N-GNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 167 ~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~-~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
.+.. ...+... .....++++| +|.+.++-..++.|+.+|..++.....+ . +....-..++|+|+++.|..+.
T Consensus 216 ~~~~~~~~~~~~---~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 216 SGFTERLSLCNA---RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp GTTCCEEEEEEC---SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred CCeecccccccc---CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence 2111 0112111 1245588999 6776666666789999999877652322 1 1122234799999998655554
Q ss_pred --CeEEEEcCC
Q 024185 242 --SVLSFWIPN 250 (271)
Q Consensus 242 --~~v~iw~~~ 250 (271)
+.|+.++.+
T Consensus 293 ~~~~I~~~~~d 303 (433)
T 4hw6_A 293 GKHCIYRVDYN 303 (433)
T ss_dssp TTTEEEEEEBC
T ss_pred CCCEEEEEeCC
Confidence 678887765
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00075 Score=52.68 Aligned_cols=195 Identities=14% Similarity=0.133 Sum_probs=119.1
Q ss_pred EeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE-Eec-----CC---cceEEE---cCCCCEEEEEec------
Q 024185 49 RGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI-LRL-----RG---RPTVAF---DQQGLVFAVAME------ 110 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~-----~~---~~~~~~---~~~~~~l~~~~~------ 110 (271)
.+..|.+....+ +++.-..++|..||...+..... +.. .+ ...+.| .|+++++++...
T Consensus 16 E~~~wd~~~g~~----~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 16 EDTIYDRTRQVF----YQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp SCEEEETTTTEE----EEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCccCcCCCCEE----EEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 357787754442 34555789999999976644333 221 11 234899 688777775432
Q ss_pred -------CCeEEEEeCC---CCCCCcceEEEecCC-----------ccceEEEEEcCCCcEEEEEecC-CeEEEEECCCC
Q 024185 111 -------AGAIKLFDSR---SYDKGPFDTFLVGGD-----------TAEVCDIKFSNDGKSMLLTTTN-NNIYVLDAYGG 168 (271)
Q Consensus 111 -------d~~i~i~d~~---~~~~~~~~~~~~~~~-----------~~~v~~~~~s~~~~~l~~~~~d-~~i~~~d~~~~ 168 (271)
+..|..||+. +++. .....+... ......++..++|+..++++.. +.|...+.. +
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~--~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G 168 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKP--VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-G 168 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCC--SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-S
T ss_pred cccccCCCCEEEEEcCCcCCCCCE--EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-C
Confidence 5779999998 6665 223333211 1348899999999999988888 888888854 3
Q ss_pred eEEEEeecCC----CCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee--EEEec--CC---cceeEEE-EEecCCcE
Q 024185 169 EKRCGFSLEP----SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE--VACWN--GN---IGVVACL-KWAPRRAM 236 (271)
Q Consensus 169 ~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~--~~---~~~v~~~-~~s~~~~~ 236 (271)
+.+..+.... .....+.++++|+|+.|++....|.+..+|+.+... +. .. +. -.....+ .--.+|+.
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEE
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEE
Confidence 3333322111 112356799999999888877799999999885433 21 11 21 1112333 33347777
Q ss_pred EEEeC---CeEEEEcCCC
Q 024185 237 FVAAS---SVLSFWIPNP 251 (271)
Q Consensus 237 l~~~~---~~v~iw~~~~ 251 (271)
++.++ +.+.+.+.+.
T Consensus 248 llV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 248 VLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEETTEEEEEECSST
T ss_pred EEEEcCCCCEEEEECCCC
Confidence 44443 4455555444
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0012 Score=52.09 Aligned_cols=195 Identities=11% Similarity=0.104 Sum_probs=116.8
Q ss_pred EEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecC----Cchhhhhhhhhhcc--CceEEEEEec--Ccce
Q 024185 14 LLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSAC----LQLMIALCLVLLTT--ALEYGIFVLM--LASF 84 (271)
Q Consensus 14 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~~~~~~l~s~~~--dg~i~iwd~~--~~~~ 84 (271)
++++ ...+.+..++. .+ ..++.+.. +..+.+.+-|+ ++.. ...+++.-. +++|.+|++. ++.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G----~~l~~~~~--g~~nnVD~r~~~~l~g~~~-dla~as~R~~~~n~l~vf~iDp~~~~- 112 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DG----KMLHSYNT--GKLNNVDIRYDFPLNGKKV-DIAAASNRSEGKNTIEIYAIDGKNGT- 112 (355)
T ss_dssp EEEEEETTTEEEEEET-TS----CEEEEECC--SCEEEEEEEEEEEETTEEE-EEEEEEECSTTCCEEEEEEECTTTCC-
T ss_pred EEEEEcCCCCEEEEcC-CC----cEEEEccC--CCcccEEEecccccCCceE-eEEEEeCCCCCCCeEEEEEECCCCCc-
Confidence 3444 45677777777 55 34444432 45565655552 2221 001345555 6899999774 333
Q ss_pred eEEEec---------CCcceEEE--cCC-CC-EEEEEecCCeEEEEeCCC---CCCCcceEEEecCCccceEEEEEcCCC
Q 024185 85 QGILRL---------RGRPTVAF--DQQ-GL-VFAVAMEAGAIKLFDSRS---YDKGPFDTFLVGGDTAEVCDIKFSNDG 148 (271)
Q Consensus 85 ~~~~~~---------~~~~~~~~--~~~-~~-~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~ 148 (271)
+..+.. .....+++ +|. ++ ++++...+|.+..|++.. ++........+.- .+.+..+...+..
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~ 191 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEY 191 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTT
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCC
Confidence 444411 22344777 774 44 677788889999998843 2221111222222 2467888899988
Q ss_pred cEEEEEecCCeEEEEECC-----CCeEEEEeecCCCCCceeeEEE--CCCCC-EEEEec-CCCcEEEEEcC-CceeEEEe
Q 024185 149 KSMLLTTTNNNIYVLDAY-----GGEKRCGFSLEPSPNTNTEATF--TPDGQ-YVVSGS-GDGTLHAWNIN-TRNEVACW 218 (271)
Q Consensus 149 ~~l~~~~~d~~i~~~d~~-----~~~~~~~~~~~~~~~~v~~~~~--~~~~~-~l~~~~-~dg~i~iwd~~-~~~~~~~~ 218 (271)
..|+.+-++..|..++.+ +++.+..+....-...+..+++ .++++ +|++++ .+++..+||.. +.+.+..+
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 899999998888888865 3455554432211123677777 56666 666655 46799999996 66666666
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00072 Score=51.08 Aligned_cols=156 Identities=11% Similarity=0.119 Sum_probs=97.9
Q ss_pred cceEEEcCCCCEEEE-EecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE-
Q 024185 93 RPTVAFDQQGLVFAV-AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK- 170 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~- 170 (271)
...++++|+++.|++ ...++.|...|.. ++. .....+.+. .....+++.+++.++++.-.++.+.++++.....
T Consensus 29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v--~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL--IRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV 104 (255)
T ss_dssp EEEEEEETTTTEEEEEEETTEEEEEEETT-CCE--EEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred cceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE--EEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence 455999998765554 6677889999987 553 334444432 5678889999988666655678899998765432
Q ss_pred --EEEeec----CCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC---CceeEEEec-------CCcceeEEEEEecCC
Q 024185 171 --RCGFSL----EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN---TRNEVACWN-------GNIGVVACLKWAPRR 234 (271)
Q Consensus 171 --~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~-------~~~~~v~~~~~s~~~ 234 (271)
+..... .........++|+|.++.|.++.+.....+|.+. ....+..+. .+...+.+++++|..
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t 184 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK 184 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence 233221 1122346789999999888777765555555543 111122221 123356899999965
Q ss_pred c-EEEEeC--CeEEEEcCCCC
Q 024185 235 A-MFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 235 ~-~l~~~~--~~v~iw~~~~~ 252 (271)
. +++... ..+.++|....
T Consensus 185 g~lliLS~~s~~L~~~d~~g~ 205 (255)
T 3qqz_A 185 NTLLVLSHESRALQEVTLVGE 205 (255)
T ss_dssp TEEEEEETTTTEEEEECTTCC
T ss_pred CeEEEEECCCCeEEEEcCCCC
Confidence 4 444443 66888886654
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0027 Score=54.63 Aligned_cols=199 Identities=11% Similarity=-0.047 Sum_probs=116.1
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce-eEEEec--CCcceEEEcCCCCEEEEE-ecCCeEEEEeCC
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF-QGILRL--RGRPTVAFDQQGLVFAVA-MEAGAIKLFDSR 120 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~--~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~ 120 (271)
-+....+++++.+..+ +++-...+.|..++++.... ...+.. .....+++.+.++.|+.+ ..++.|.+.++.
T Consensus 39 ~~~~~~ld~~~~~~~l----y~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d 114 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLI----YWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD 114 (619)
T ss_dssp CSCEEEEEEETTTTEE----EEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEEEeCCCEE----EEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC
Confidence 3445668899866653 33545567888888865432 222322 234559999977666665 556899999997
Q ss_pred CCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec--CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEe
Q 024185 121 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 198 (271)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 198 (271)
.... .......-.....+++.|.+..|+.+.. .+.|...++.. .....+.... -.....++++++++.|+.+
T Consensus 115 G~~~----~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~~-~~~P~Glald~~~~~LY~a 188 (619)
T 3s94_A 115 GSLR----KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSE-IYWPNGLTLDYEEQKLYWA 188 (619)
T ss_dssp SCSC----EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEECSS-CSSEEEEEEETTTTEEEEE
T ss_pred CCCE----EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-CceEEEEeCC-CCCCcEEEEEccCCEEEEE
Confidence 6543 2222234456778999997555655543 46777777653 3233332111 2346789999987766655
Q ss_pred -cCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCCC
Q 024185 199 -SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNS 255 (271)
Q Consensus 199 -~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~~ 255 (271)
...+.|...|+..........+......++++..+ .|..+. +.|...|..+++..
T Consensus 189 D~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 189 DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp ETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCC
T ss_pred eCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCccc
Confidence 44678999998654333222212222356777655 455554 66888888777644
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-05 Score=70.10 Aligned_cols=177 Identities=8% Similarity=-0.019 Sum_probs=104.1
Q ss_pred cCceEEEEEecCcceeEEEec-CCcceEEEcCCCCEEEEE-ecCCeEEEEeCCC----CCCCcceEEEecCCccceEEEE
Q 024185 70 TALEYGIFVLMLASFQGILRL-RGRPTVAFDQQGLVFAVA-MEAGAIKLFDSRS----YDKGPFDTFLVGGDTAEVCDIK 143 (271)
Q Consensus 70 ~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~----~~~~~~~~~~~~~~~~~v~~~~ 143 (271)
..+.|+..++++.+....+.. .....++|++.+..|+.+ ...+.|+.+++.. ... ...+.........++
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~----~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY----DTVISRDIQAPDGLA 459 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCC----CCBCCSCC--CCCEE
T ss_pred CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcce----EEEEeCCCCCcceEE
Confidence 445778888876665444433 234558999887777766 4457899999875 221 111111122345678
Q ss_pred EcCCC-cEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC--CCcEEEEEcCCceeEEEecC
Q 024185 144 FSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG--DGTLHAWNINTRNEVACWNG 220 (271)
Q Consensus 144 ~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~ 220 (271)
+.+.+ +++++-...+.|.++++........+.... .....++++|.+.+|+.+.. .+.|..+++........+..
T Consensus 460 vD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~--~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~ 537 (699)
T 1n7d_A 460 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQG--SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 537 (699)
T ss_dssp CCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSS--CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCS
T ss_pred EEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCC--CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeC
Confidence 88644 444444457889999987554333232211 22566899997666665543 26788887753322222222
Q ss_pred CcceeEEEEEecCCcEEEEeC---CeEEEEcCCCC
Q 024185 221 NIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPS 252 (271)
Q Consensus 221 ~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~ 252 (271)
.-...+.|+|+|++..|..+. +.|..+++...
T Consensus 538 ~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 538 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 233457899999866555554 67999998754
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00027 Score=58.57 Aligned_cols=149 Identities=13% Similarity=0.130 Sum_probs=91.6
Q ss_pred eEEEcC-CCCEEEEEec-CCeEEEEeCCCCCCCcceEEEecC---CccceEEEEE-------cCCCcEEEEEecCC----
Q 024185 95 TVAFDQ-QGLVFAVAME-AGAIKLFDSRSYDKGPFDTFLVGG---DTAEVCDIKF-------SNDGKSMLLTTTNN---- 158 (271)
Q Consensus 95 ~~~~~~-~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~---~~~~v~~~~~-------s~~~~~l~~~~~d~---- 158 (271)
.++|+| ++..|+++.. .+.|++.|.+++.. ...... .......++| +++++.|+++...+
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v----~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRML----SSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEETTTTEE----EEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEECCCCEE----EEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 489998 4555555543 46788999887663 211211 1235889999 99999777776543
Q ss_pred ---eEEEEECCC-CeEE-----EEeecCCCCCceeeEEECCC-CCEEEEecCCCcEEEEEcC-------Ccee-------
Q 024185 159 ---NIYVLDAYG-GEKR-----CGFSLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAWNIN-------TRNE------- 214 (271)
Q Consensus 159 ---~i~~~d~~~-~~~~-----~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~-------~~~~------- 214 (271)
.+.+++... ++.. ..+....+ ...++++|+ +.++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~---p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQ---CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESC---CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred cCceEEEEecCCCCceeecccceeeccCCC---ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 366776433 2221 22222222 445889995 5555556667889999997 4543
Q ss_pred ----EEE-e-cCCcceeEEEEEecCCcEEEEeC---CeEEEEcCC
Q 024185 215 ----VAC-W-NGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPN 250 (271)
Q Consensus 215 ----~~~-~-~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~ 250 (271)
... + .+.......++|+|+|++|..+. ..|+.++..
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 112 1 12234467999999999655553 668886553
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0021 Score=53.32 Aligned_cols=158 Identities=11% Similarity=0.126 Sum_probs=92.0
Q ss_pred EEeeEEecC-CchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-----cceEEE-------cCCCCEEEEEecCC--
Q 024185 48 RRGLFLSAC-LQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-----RPTVAF-------DQQGLVFAVAMEAG-- 112 (271)
Q Consensus 48 v~~~~~s~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~-------~~~~~~l~~~~~d~-- 112 (271)
...++++|. ...+ +++....+.|++.|.+++.......... ...++| ++++++|+++...+
T Consensus 141 p~~la~dp~~~~~L----yv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 141 NGRLAFDPLNKDHL----YICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp EEEEEEETTEEEEE----EEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred CCEEEEccCCCCEE----EEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 446888883 4432 2333445678888888777654443321 345999 99999777776544
Q ss_pred -----eEEEEeCCC-CCCCc-ceEEEecCCccceEEEEEcCCCcEE-EEEecCCeEEEEECC-------CCeE-------
Q 024185 113 -----AIKLFDSRS-YDKGP-FDTFLVGGDTAEVCDIKFSNDGKSM-LLTTTNNNIYVLDAY-------GGEK------- 170 (271)
Q Consensus 113 -----~i~i~d~~~-~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~~~d~~-------~~~~------- 170 (271)
.|.+++... +.... .....+.. ......++.+|++..| ++-..++.|..+|+. +++.
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred cccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 366776443 22210 00011111 1234577889954444 455568889999987 5543
Q ss_pred ----EEEeecCCCCCceeeEEECCCCCEEEEe-cCCCcEEEEEcC
Q 024185 171 ----RCGFSLEPSPNTNTEATFTPDGQYVVSG-SGDGTLHAWNIN 210 (271)
Q Consensus 171 ----~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~ 210 (271)
...+...........++|+|+|++|+.+ +..+.|+.++..
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 1121111112235679999999965444 556788886653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.06 E-value=4e-05 Score=66.87 Aligned_cols=175 Identities=11% Similarity=-0.034 Sum_probs=100.4
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec--CCcceEEEcCCCCEEEEEec--CCeEEEEeCCCCC
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL--RGRPTVAFDQQGLVFAVAME--AGAIKLFDSRSYD 123 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~ 123 (271)
...+++.+.+..+ +++-...+.|.+++++.......+.. .....++++|.+.+|+.+.. .+.|..+++....
T Consensus 455 P~glavD~~~g~L----Y~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~ 530 (699)
T 1n7d_A 455 PDGLAVDWIHSNI----YWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 530 (699)
T ss_dssp CCCEECCCSSSBC----EECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC
T ss_pred cceEEEEeeCCcE----EEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC
Confidence 3456776544432 33555677898988865543333322 23455999997766666542 2678888776543
Q ss_pred CCcceEEEecCCccceEEEEEcCCCcEEEEE-ecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC
Q 024185 124 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 202 (271)
Q Consensus 124 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 202 (271)
. .......-.....|+|+|++..|+.+ +..+.|..+|+........+...........+++..+ .++++....+
T Consensus 531 ~----~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~ 605 (699)
T 1n7d_A 531 I----YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINE 605 (699)
T ss_dssp C----CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTT
T ss_pred e----eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCC
Confidence 2 11111222346679999976666555 4577899999864332222221111112334566544 3444555578
Q ss_pred cEEEEEcCCceeEEEecCCcceeEEEEEe
Q 024185 203 TLHAWNINTRNEVACWNGNIGVVACLKWA 231 (271)
Q Consensus 203 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 231 (271)
.|..+|..+++.+..+.........+++.
T Consensus 606 ~V~~~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 606 AIFSANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp CEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred eEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence 99999988888877764332234445443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0028 Score=49.87 Aligned_cols=189 Identities=10% Similarity=0.025 Sum_probs=104.6
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEec-CcceeEEEec---CCcceEEEcCCCCEEEEEecCCeEEEEeCCC
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM-LASFQGILRL---RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRS 121 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 121 (271)
+.+..+.+.+++.. ++.+ .+|.+ |-.. .++.-..... .....+++.+++.+++++. +|.++.-+-..
T Consensus 122 ~~~~~i~~~~~~~~-----~~~~-~~g~v--~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~g 192 (327)
T 2xbg_A 122 GSPRLIKALGNGSA-----EMIT-NVGAI--YRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPG 192 (327)
T ss_dssp SCEEEEEEEETTEE-----EEEE-TTCCE--EEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTT
T ss_pred CCeEEEEEECCCCE-----EEEe-CCccE--EEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCC
Confidence 34566776666664 3333 34543 3222 2433222221 1345588899888776664 45554432111
Q ss_pred CCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecC--CCCCceeeEEECCCCCEEEEec
Q 024185 122 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE--PSPNTNTEATFTPDGQYVVSGS 199 (271)
Q Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~ 199 (271)
++. ..... ......+..+.+.++++.+ .++.+|.+++.+...++.-..+... .....+..+.+.++++.++.+.
T Consensus 193 G~t--W~~~~-~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~ 268 (327)
T 2xbg_A 193 QTA--WEPHN-RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG 268 (327)
T ss_dssp CSS--CEEEE-CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred CCc--eeECC-CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC
Confidence 221 11222 2345678899999988754 5566788877643324332222211 1112377888998888777655
Q ss_pred CCCcEEEEEcCCceeEEEec---CCcceeEEEEEecCCcEEEEeC-CeEEEEcC
Q 024185 200 GDGTLHAWNINTRNEVACWN---GNIGVVACLKWAPRRAMFVAAS-SVLSFWIP 249 (271)
Q Consensus 200 ~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~ 249 (271)
+|.+ .+....++.-..+. .....+.++.|.++++.++.+. |.|.-++-
T Consensus 269 -~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 269 -AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp -TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred -CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 5666 34444455444443 1234678899987887777776 77766653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0055 Score=52.77 Aligned_cols=226 Identities=10% Similarity=-0.019 Sum_probs=135.7
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec--
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL-- 90 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-- 90 (271)
.|+|+ ....+..++....... ....+.+ -.....+++++.+..+ +++-..++.|+.++++.......+..
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~--~~~~~~~-~~~~~~l~~d~~~~~l----ywtD~~~~~I~r~~~~g~~~~~v~~~g~ 79 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNN--VAIPLTG-VKEASALDFDVTDNRI----YWTDISLKTISRAFMNGSALEHVVEFGL 79 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCE--EECCCCS-CSCEEEEEEETTTTEE----EEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred EEEEE-eCCcEEEEECCCCCcc--eEEEcCC-CCceEEEEEECCCCEE----EEEECCCCeEEEEECCCCCcEEEEeCCC
Confidence 34444 4667777766543221 1111222 2456679999876654 34666788899888865544333332
Q ss_pred CCcceEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe--cCCeEEEEECCC
Q 024185 91 RGRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYG 167 (271)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~ 167 (271)
.....+++.+.++.|+.+ ...+.|.+.++..... .......-.....+++.|....|+.+. ..+.|...++..
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~----~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG 155 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR----QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG 155 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC----EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE----EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC
Confidence 234558998877666655 4567899999876543 222223345678999999655555554 257888888764
Q ss_pred CeEEEEeecCCCCCceeeEEECCCCCEEEEec-CCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 168 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
... ..+... -.....++++++++.|+.+. ..+.|...|+..... ..+........++++.. +.++++-. +.|
T Consensus 156 ~~~-~~l~~~--~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I 230 (628)
T 4a0p_A 156 SER-TTLVPN--VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSI 230 (628)
T ss_dssp CSC-EEEECS--CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEE
T ss_pred Cce-EEEECC--CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEE
Confidence 433 332222 23477899999877776664 467899999865433 33322223345777765 34444432 778
Q ss_pred EEEcCCCCCCC
Q 024185 245 SFWIPNPSSNS 255 (271)
Q Consensus 245 ~iw~~~~~~~~ 255 (271)
...|..+++..
T Consensus 231 ~~~dk~tg~~~ 241 (628)
T 4a0p_A 231 ERANKTSGQNR 241 (628)
T ss_dssp EEEETTTCCSC
T ss_pred EEEECCCCCce
Confidence 88887766543
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0028 Score=49.07 Aligned_cols=181 Identities=12% Similarity=0.022 Sum_probs=95.0
Q ss_pred hhhhccC-----ceEEEEEecCcc---eeEEEecC--CcceEEEcCCCCEEEEEecC-----CeEEEEeCCCCCCCcceE
Q 024185 65 LVLLTTA-----LEYGIFVLMLAS---FQGILRLR--GRPTVAFDQQGLVFAVAMEA-----GAIKLFDSRSYDKGPFDT 129 (271)
Q Consensus 65 l~s~~~d-----g~i~iwd~~~~~---~~~~~~~~--~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~ 129 (271)
++.|+.+ ..+.+||..+++ ....-... .....+...+++.++.|+.+ ..+.+||..+.+. ...
T Consensus 66 ~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W--~~~ 143 (301)
T 2vpj_A 66 YVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQW--SML 143 (301)
T ss_dssp EEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE--EEE
T ss_pred EEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeE--EEC
Confidence 4455543 468889987766 33222111 11112222266777777543 3688999887664 112
Q ss_pred EEecCCccceEEEEEcCCCcEEEEEecC-----CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC---
Q 024185 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD--- 201 (271)
Q Consensus 130 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--- 201 (271)
..+.........+.+ +++.++.|+.+ ..+..||..+.+-...-...........+. -+++.++.|+.+
T Consensus 144 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~ 219 (301)
T 2vpj_A 144 GDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTA 219 (301)
T ss_dssp EECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSS
T ss_pred CCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCc
Confidence 222211112222222 67777777654 468999988876443311111111111122 256777777764
Q ss_pred --CcEEEEEcCCceeEEE--ecCCcceeEEEEEecCCcEEEEeC-------CeEEEEcCCCCC
Q 024185 202 --GTLHAWNINTRNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS 253 (271)
Q Consensus 202 --g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~ 253 (271)
..+.+||+.+.+-... +....... ++ ..-++++++.|+ ..+.+||+++.+
T Consensus 220 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 220 HLSSVEAYNIRTDSWTTVTSMTTPRCYV-GA-TVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSC-EE-EEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred ccceEEEEeCCCCcEEECCCCCCcccce-eE-EEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 4689999987654432 22111111 22 223677777775 347888887654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0061 Score=52.52 Aligned_cols=178 Identities=10% Similarity=0.017 Sum_probs=113.4
Q ss_pred ccCceEEEEEecCcceeEEEecC---CcceEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEE
Q 024185 69 TTALEYGIFVLMLASFQGILRLR---GRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF 144 (271)
Q Consensus 69 ~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (271)
+....|+..++++......+... ....++|++.+..|+.+ ..++.|+.+++..... ...+.........+++
T Consensus 12 s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~----~~v~~~g~~~P~GlAv 87 (628)
T 4a0p_A 12 SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL----EHVVEFGLDYPEGMAV 87 (628)
T ss_dssp EETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSSCSCCCEEEE
T ss_pred EeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc----EEEEeCCCCCcceEEE
Confidence 35567888888766544444322 34459999977766665 4568999999876543 2222222245678889
Q ss_pred cCCCcEEEEE-ecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec--CCCcEEEEEcCCceeEEEecCC
Q 024185 145 SNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS--GDGTLHAWNINTRNEVACWNGN 221 (271)
Q Consensus 145 s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~ 221 (271)
.+.+..|+.+ ...+.|.+.++..... ..+.. ..-.....++++|...+|+... ..+.|...++.......... .
T Consensus 88 D~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~-~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~ 164 (628)
T 4a0p_A 88 DWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-N 164 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSTTC-EEEEC-SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S
T ss_pred EeCCCEEEEEECCCCEEEEEecCCCcE-EEEEe-CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-C
Confidence 8765555444 4578899999865432 22221 1113367899999665666554 25678888876443333333 3
Q ss_pred cceeEEEEEecCCcEEEEeC---CeEEEEcCCCCC
Q 024185 222 IGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSS 253 (271)
Q Consensus 222 ~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~ 253 (271)
-.....+++++++..|..+. +.|...+++...
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~ 199 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN 199 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCc
Confidence 45578999999877776665 678999887643
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0013 Score=52.25 Aligned_cols=154 Identities=9% Similarity=0.086 Sum_probs=90.9
Q ss_pred cceEEEcCCCCEEEEE------------ecCCeEEEEeCCCCCCCcceEEEecC-----CccceEEEEEcC--CCc-EEE
Q 024185 93 RPTVAFDQQGLVFAVA------------MEAGAIKLFDSRSYDKGPFDTFLVGG-----DTAEVCDIKFSN--DGK-SML 152 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~------------~~d~~i~i~d~~~~~~~~~~~~~~~~-----~~~~v~~~~~s~--~~~-~l~ 152 (271)
...+...|+|..++++ ..+|.|.++|..+.... .....+.+ .......+.+.+ ++. +|+
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~-~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA-VSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCC-EEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc-eEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 3447778877554444 26899999999754321 12223333 223566777655 453 454
Q ss_pred EEe-c--CCeEEEEECCCC--eE--EEEeecCCCCCceeeEEECCCCCEEEEecC-----------------CCcEEEEE
Q 024185 153 LTT-T--NNNIYVLDAYGG--EK--RCGFSLEPSPNTNTEATFTPDGQYVVSGSG-----------------DGTLHAWN 208 (271)
Q Consensus 153 ~~~-~--d~~i~~~d~~~~--~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------dg~i~iwd 208 (271)
++. . +.++.+|++..+ .. +..+... .-...+.+.+.++|.+.++... .|.+.-+|
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~-~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK-LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCT-TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccC-CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 443 2 567888776543 22 2233322 2245788999999998776541 24555555
Q ss_pred cCCceeEEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCC
Q 024185 209 INTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNP 251 (271)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~ 251 (271)
. ++...... .-...+.++|+||++.|..+. +.|..|++..
T Consensus 210 ~--~~~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 210 P--NDVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp T--TCCEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred C--CeEEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 4 33222222 223458999999998877765 7799999863
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0018 Score=52.23 Aligned_cols=137 Identities=12% Similarity=0.194 Sum_probs=90.0
Q ss_pred ccCceEEEEEecCcceeEEEecC------CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCC--------cce--EEEe
Q 024185 69 TTALEYGIFVLMLASFQGILRLR------GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG--------PFD--TFLV 132 (271)
Q Consensus 69 ~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--------~~~--~~~~ 132 (271)
..++.||.-++..+...+.++.. .+..+..+|+|++||..+ +..|.+..+..+... +++ .+.+
T Consensus 38 a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l 116 (452)
T 3pbp_A 38 IQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI 116 (452)
T ss_dssp EETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred EECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEc
Confidence 44577777777644445555443 355599999999999987 568999888733211 112 2222
Q ss_pred cC----CccceEEEEEcCC---CcEEEEEecCCeEEEEECCCC--eEEEEee-------cCCCCCceeeEEECCCCCEEE
Q 024185 133 GG----DTAEVCDIKFSND---GKSMLLTTTNNNIYVLDAYGG--EKRCGFS-------LEPSPNTNTEATFTPDGQYVV 196 (271)
Q Consensus 133 ~~----~~~~v~~~~~s~~---~~~l~~~~~d~~i~~~d~~~~--~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~ 196 (271)
.. ...+|..+.|+|- +..|++-..|+.|++||+... ++. .++ .......+.+++|.+++-.|.
T Consensus 117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLY 195 (452)
T 3pbp_A 117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLY 195 (452)
T ss_dssp GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEE
T ss_pred CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEE
Confidence 21 2467999999994 568999999999999999752 122 222 111113488899999877565
Q ss_pred E--ecCCCcEEEE
Q 024185 197 S--GSGDGTLHAW 207 (271)
Q Consensus 197 ~--~~~dg~i~iw 207 (271)
. .+.+|.|+-.
T Consensus 196 vl~~t~~GDIYAl 208 (452)
T 3pbp_A 196 CLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEecCCCCCEEEE
Confidence 5 5578888754
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0034 Score=48.71 Aligned_cols=181 Identities=10% Similarity=0.059 Sum_probs=94.5
Q ss_pred hhhhccC----ceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecC------CeEEEEeCCCCCCCcceEEEe
Q 024185 65 LVLLTTA----LEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEA------GAIKLFDSRSYDKGPFDTFLV 132 (271)
Q Consensus 65 l~s~~~d----g~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~ 132 (271)
++.|+.+ ..+.+||..+++....-... .....+..-+++.++.|+.+ ..+.+||..+.+. .....+
T Consensus 59 yv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W--~~~~~~ 136 (306)
T 3ii7_A 59 YILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESW--HTKPSM 136 (306)
T ss_dssp EEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEE--EEECCC
T ss_pred EEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCce--EeCCCC
Confidence 4455544 66888898877643332222 11112222367777777654 4689999987653 111111
Q ss_pred cCCccceEEEEEcCCCcEEEEEec---------CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC--
Q 024185 133 GGDTAEVCDIKFSNDGKSMLLTTT---------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-- 201 (271)
Q Consensus 133 ~~~~~~v~~~~~s~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 201 (271)
.........+. -+++.++.|+. -..+.+||..+.+-...-... .+..-.++.. -+++.++.|+.+
T Consensus 137 p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~-~~~~i~v~GG~~~~ 212 (306)
T 3ii7_A 137 LTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI-EARKNHGLVF-VKDKIFAVGGQNGL 212 (306)
T ss_dssp SSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCS-SCCBSCEEEE-ETTEEEEECCEETT
T ss_pred cCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCcc-chhhcceEEE-ECCEEEEEeCCCCC
Confidence 11111112222 25676777654 345889999887643321111 1111111222 266777777654
Q ss_pred ---CcEEEEEcCCceeEE--EecCCcceeEEEEEecCCcEEEEeC-------CeEEEEcCCCCC
Q 024185 202 ---GTLHAWNINTRNEVA--CWNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS 253 (271)
Q Consensus 202 ---g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~ 253 (271)
..+.+||+.+.+-.. .+.........+.+ ++++++.|+ .++.+||+++.+
T Consensus 213 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 213 GGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 468999998765432 22211112222222 677777775 458899987754
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0051 Score=48.01 Aligned_cols=217 Identities=10% Similarity=0.045 Sum_probs=107.0
Q ss_pred ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhcc-----------CceEEEEEecCcceeEEE
Q 024185 20 NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTT-----------ALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~ 88 (271)
+..+..++...+.+.. ..+.....+........++.. ++.|+. ...+..||..+++-...-
T Consensus 12 G~~~~~yd~~~~~W~~---~~~~~p~~r~~~~~~~~~~~i-----yv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 12 EEGAVAYDPAANECYC---ASLSSQVPKNHVSLVTKENQV-----FVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp TTEEEEEETTTTEEEE---EECCCCSCSSEEEEECTTCCE-----EEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred CCceEEECCCCCeEec---CCCCCCCCccceEEEEECCEE-----EEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 3567778877775542 222222222333333345554 445552 123677888776643221
Q ss_pred ecCCc---ceEEEcCCCCEEEEEecC--------CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-
Q 024185 89 RLRGR---PTVAFDQQGLVFAVAMEA--------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT- 156 (271)
Q Consensus 89 ~~~~~---~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 156 (271)
..... ..++. -+++.++.|+.+ ..+.+||..+.+... ...+.........+ ..+++.++.|+.
T Consensus 84 ~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~--~~~~p~~r~~~~~~--~~~~~iyv~GG~~ 158 (315)
T 4asc_A 84 PLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE--SDPLPYVVYGHTVL--SHMDLVYVIGGKG 158 (315)
T ss_dssp CBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE--CCCCSSCCBSCEEE--EETTEEEEECCBC
T ss_pred CCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE--CCCCCCcccceeEE--EECCEEEEEeCCC
Confidence 11111 11222 256666666632 368999998765311 11111111111222 235677777775
Q ss_pred -----CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC-----cEEEEEcCCceeEEEe--cCCcce
Q 024185 157 -----NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG-----TLHAWNINTRNEVACW--NGNIGV 224 (271)
Q Consensus 157 -----d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~--~~~~~~ 224 (271)
-..+.+||..+.+-...-.... +..-.+++ .-+++.++.|+.++ .+.+||+.+.+-...- ......
T Consensus 159 ~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 236 (315)
T 4asc_A 159 SDRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSS 236 (315)
T ss_dssp TTSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBS
T ss_pred CCCcccceEEEEeCCCCeEEECCCCCC-chhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccc
Confidence 2468999988775433211111 11111122 22667777777654 5889999876543322 111111
Q ss_pred eEEEEEecCCcEEEEeC----------------CeEEEEcCCCCC
Q 024185 225 VACLKWAPRRAMFVAAS----------------SVLSFWIPNPSS 253 (271)
Q Consensus 225 v~~~~~s~~~~~l~~~~----------------~~v~iw~~~~~~ 253 (271)
. ++. .-++++++.|+ .++.+||+++.+
T Consensus 237 ~-~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 237 L-SLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp C-EEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred e-eEE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 1 222 22566666664 137788887753
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0019 Score=56.00 Aligned_cols=120 Identities=9% Similarity=0.065 Sum_probs=79.5
Q ss_pred eEEEcC-CCCEEEEEecCC-----------eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CCeEE
Q 024185 95 TVAFDQ-QGLVFAVAMEAG-----------AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIY 161 (271)
Q Consensus 95 ~~~~~~-~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~ 161 (271)
..++.+ +++.++.|+.+. .+.+||..+++........ ..+.....+.++.++++.+++|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-TKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-CSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC-CCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 367777 888888886542 5889999988753333222 122333445778899999999884 56899
Q ss_pred EEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec-CC-----CcEEEEEcCCceeEE
Q 024185 162 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-GD-----GTLHAWNINTRNEVA 216 (271)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~ 216 (271)
+||..+++-...-.... +..-.+++..++++.++.|+ .+ ..+.+||..+++-..
T Consensus 269 ~yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328 (656)
T ss_dssp EEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred EecCcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee
Confidence 99998776443221111 12233466678999999998 34 469999998766433
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.85 E-value=0.018 Score=53.24 Aligned_cols=229 Identities=10% Similarity=0.048 Sum_probs=120.2
Q ss_pred eeEEeeecceeeEEEEee--ccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce-eEEE
Q 024185 12 QALLFARQNIILILLESL--CGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF-QGIL 88 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~ 88 (271)
..|++++.+|.+..+... ++.....+...+. ..++.-..+...+.. . ++..+ +.-..++--+ ++. ...+
T Consensus 618 ~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG--~~pv~L~~~~~~~~~-~---V~a~s-~rp~liy~~~-~~l~~s~l 689 (1158)
T 3ei3_A 618 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLG--TQPTVLRTFRSLSTT-N---VFACS-DRPTVIYSSN-HKLVFSNV 689 (1158)
T ss_dssp EEEEEEETTSEEEEEEECTTTCCEEEEEEEECC--SSCCEEEEEESSSCE-E---EEEES-SSCEEEEESS-SSEEEEEB
T ss_pred cEEEEEeCCCeEEEEEEcCCCCccccceeEEcC--CCceEEEEEeeCCce-e---EEEEC-CCCEEEEEcC-CceEEecc
Confidence 457777888888766532 2322222222232 234443333333332 1 22223 3333333322 222 1112
Q ss_pred ecCCcc-eEEEcCCC--CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC--------
Q 024185 89 RLRGRP-TVAFDQQG--LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-------- 157 (271)
Q Consensus 89 ~~~~~~-~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------- 157 (271)
....+. ...|+... +-++..+ ++.++|..+.+.+. .....+.- ...+..++++|+.+.++.+..+
T Consensus 690 ~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~--~~~~~ipL-~~Tprri~y~~~~~~~~v~~~~~~~~~~~~ 765 (1158)
T 3ei3_A 690 NLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQK--LHIRTVPL-YESPRKICYQEVSQCFGVLSSRIEVQDTSG 765 (1158)
T ss_dssp SSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSS--EEEEEEEC-SSEEEEEEEEGGGTEEEEEEEEEEEECSSS
T ss_pred ChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCC--eeEEEEeC-CCCceEEEEcCCCCEEEEEEEecccccccc
Confidence 222332 35665432 3355444 45699988865443 22222221 2567888888877665543311
Q ss_pred -----------------------------------------CeEEEEECCCCeEEEEeecCCCCCceeeEE---ECCC-C
Q 024185 158 -----------------------------------------NNIYVLDAYGGEKRCGFSLEPSPNTNTEAT---FTPD-G 192 (271)
Q Consensus 158 -----------------------------------------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~---~~~~-~ 192 (271)
+.+++.|-.+.+.+..+...... .+.+++ |..+ .
T Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE-~~~sv~~v~~~~~~~ 844 (1158)
T 3ei3_A 766 GTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNE-YALSLVSCKLGKDPN 844 (1158)
T ss_dssp SEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTE-EEEEEEEECCTTCCC
T ss_pred ccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCc-ceEEEEEEEEccCCC
Confidence 24677777777776666554443 233333 3322 4
Q ss_pred CEEEEec----------CCCcEEEEEcCCceeEEEe-cCCcceeEEEEEecCCcEEEEeCCeEEEEcCCCCCC
Q 024185 193 QYVVSGS----------GDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSN 254 (271)
Q Consensus 193 ~~l~~~~----------~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~v~iw~~~~~~~ 254 (271)
.+++.|+ ..|.|++|++..++..... ...+++|++++-- +|+++++.+.++++|++...+.
T Consensus 845 ~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~ig~~l~vy~l~~~~~ 916 (1158)
T 3ei3_A 845 TYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASINSTVRLYEWTTEKE 916 (1158)
T ss_dssp CEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEETTEEEEEEECTTSC
T ss_pred EEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEcCCEEEEEECCCCce
Confidence 6888775 3478999999754332211 2235678887743 5777777779999999986653
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0038 Score=48.53 Aligned_cols=173 Identities=8% Similarity=0.059 Sum_probs=89.6
Q ss_pred ceEEEEEecCcceeEEEecC--Cc-ceEEEcCCCCEEEEEecC-----CeEEEEeCCCCCCCcceEEEecCCccceEEEE
Q 024185 72 LEYGIFVLMLASFQGILRLR--GR-PTVAFDQQGLVFAVAMEA-----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK 143 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 143 (271)
..+.+||..+.+....-... .. .+++. -+++.++.|+.+ ..+.+||..+.+.... ..+.........+.
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--~~~p~~r~~~~~~~ 166 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLV--APMLTRRIGVGVAV 166 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEEC--CCCSSCCBSCEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeEC--CCCCccccceEEEE
Confidence 35778888776533222111 11 11222 266766766533 4688999887653111 11111111222222
Q ss_pred EcCCCcEEEEEecC-----CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC-----CcEEEEEcCCce
Q 024185 144 FSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-----GTLHAWNINTRN 213 (271)
Q Consensus 144 ~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 213 (271)
+ +++.++.|+.+ ..+..||..+.+-...-...........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 167 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 167 L--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp E--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred E--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 2 56777777654 4689999887754332111111111112222 67777777764 469999998765
Q ss_pred eEEE--ecCCcceeEEEEEecCCcEEEEeC-------CeEEEEcCCCCC
Q 024185 214 EVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS 253 (271)
Q Consensus 214 ~~~~--~~~~~~~v~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~ 253 (271)
-... ++..... .++.. -++++++.|+ .++.+||+++.+
T Consensus 243 W~~~~~~p~~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 243 WTFVAPMKHRRSA-LGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp EEECCCCSSCCBS-CEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred EEECCCCCCCccc-eEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 4332 2211111 12222 2677777765 458899987754
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.01 Score=47.91 Aligned_cols=147 Identities=12% Similarity=0.218 Sum_probs=96.1
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecC--CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe-----
Q 024185 97 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG--DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE----- 169 (271)
Q Consensus 97 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~----- 169 (271)
....+|..++.+- ++.||.-++..... ++...+.. ....+..+..||+|++||..+. ..|.+..+..+.
T Consensus 27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~--Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSL--YHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEETTTTEEEEEE-TTEEEEEETTTCSS--CEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCC
T ss_pred EEEcCCCEEEEEE-CCEEEEEECCCCCc--ceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcc
Confidence 3445666666665 57888888774432 55555543 2336888999999999988764 489999887321
Q ss_pred -------EEEEeecCC----CCCceeeEEECCC---CCEEEEecCCCcEEEEEcCCc--eeEEEe---------cCCcce
Q 024185 170 -------KRCGFSLEP----SPNTNTEATFTPD---GQYVVSGSGDGTLHAWNINTR--NEVACW---------NGNIGV 224 (271)
Q Consensus 170 -------~~~~~~~~~----~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~--~~~~~~---------~~~~~~ 224 (271)
..+.+.... ....|..+.|+|- +..|++-..|+.|++||+... ++. .+ ......
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~e 181 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVND 181 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccce
Confidence 122333321 1245999999996 457888999999999999752 112 22 122256
Q ss_pred eEEEEEecCCcEEEE--eC--CeEEEEc
Q 024185 225 VACLKWAPRRAMFVA--AS--SVLSFWI 248 (271)
Q Consensus 225 v~~~~~s~~~~~l~~--~~--~~v~iw~ 248 (271)
|.+++|.+++-.|.. .+ |+|+-..
T Consensus 182 v~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 182 ITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred EEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 889999998764444 33 7766544
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.005 Score=48.73 Aligned_cols=144 Identities=15% Similarity=0.172 Sum_probs=83.6
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEe----cCCccceEEEEEcCC---CcEEEEE---ecCCeEE
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV----GGDTAEVCDIKFSND---GKSMLLT---TTNNNIY 161 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~---~~~l~~~---~~d~~i~ 161 (271)
..+.++|.|||+.+++--..|.|++++..+++.. ....+ .........++++|+ +..|+.. ..++.|.
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~--~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT--ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe--eecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 3466999999996666555899999987655431 11111 123456889999995 3344433 2355666
Q ss_pred EEECCCC----------eEEE-EeecCCCCCceeeEEECCCCCEEEEecC-------------CCcEEEEEcCCc-----
Q 024185 162 VLDAYGG----------EKRC-GFSLEPSPNTNTEATFTPDGQYVVSGSG-------------DGTLHAWNINTR----- 212 (271)
Q Consensus 162 ~~d~~~~----------~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~----- 212 (271)
-|.+..+ +.+. .+.. .....-..+.|.|||.+.++.+. .|.|.-.+....
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 6765541 1111 1221 11122456999999987777542 355555555321
Q ss_pred ----eeEEEecCCcceeEEEEEecCCcEEEEe
Q 024185 213 ----NEVACWNGNIGVVACLKWAPRRAMFVAA 240 (271)
Q Consensus 213 ----~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 240 (271)
..+.. .+|.. ...++|+|+|.++++-
T Consensus 190 Pf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d 219 (347)
T 3das_A 190 PFPGSPVYS-YGHRN-VQGLAWDDKQRLFASE 219 (347)
T ss_dssp SSTTCCEEE-BCCSB-CCEEEECTTCCEEEEE
T ss_pred CCCCCeEEe-eCCCC-cceEEECCCCCEEEEe
Confidence 11222 25544 4689999998876654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.013 Score=46.60 Aligned_cols=175 Identities=11% Similarity=0.064 Sum_probs=99.2
Q ss_pred cCceEEEEEecCcc-eeEEE--ecC-------CcceEEEcC--CCC-EEEEE-ec--CCeEEEEeCCCCCCCcceEEEec
Q 024185 70 TALEYGIFVLMLAS-FQGIL--RLR-------GRPTVAFDQ--QGL-VFAVA-ME--AGAIKLFDSRSYDKGPFDTFLVG 133 (271)
Q Consensus 70 ~dg~i~iwd~~~~~-~~~~~--~~~-------~~~~~~~~~--~~~-~l~~~-~~--d~~i~i~d~~~~~~~~~~~~~~~ 133 (271)
.+|.|.++|.++.. ....+ .+. ...-+.+.+ ++. +|+++ .. +.++.+|++............+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 68999999987421 12222 221 112255544 453 45555 22 46788887765432112222333
Q ss_pred CC-ccceEEEEEcCCCcEEEEEe-----------------cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEE
Q 024185 134 GD-TAEVCDIKFSNDGKSMLLTT-----------------TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV 195 (271)
Q Consensus 134 ~~-~~~v~~~~~s~~~~~l~~~~-----------------~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 195 (271)
+. -....++.+.++|.+.++.. ..|.+.-+|. ++.......- ...+.++|+||++.+
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l---~~pNGia~spDg~~l 235 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGF---DFANGINISPDGKYV 235 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEE---SSEEEEEECTTSSEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCC---cccCcceECCCCCEE
Confidence 22 24578999999998766653 1245555654 3322222221 126679999999887
Q ss_pred EEec-CCCcEEEEEcCC-cee--EEEecCCcceeEEEEEec-CCcEEEEeC---CeEEEEcCC
Q 024185 196 VSGS-GDGTLHAWNINT-RNE--VACWNGNIGVVACLKWAP-RRAMFVAAS---SVLSFWIPN 250 (271)
Q Consensus 196 ~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~---~~v~iw~~~ 250 (271)
+.+. ..+.|..|++.. ++. ...+. ..+..-.+++.+ +|++.+++. +.|..|+.+
T Consensus 236 Yvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 236 YIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 7664 468899999863 322 22332 245568899999 599887664 344444543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.011 Score=45.71 Aligned_cols=181 Identities=12% Similarity=0.096 Sum_probs=93.4
Q ss_pred hhhhccC-----ceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecCC-----eEEEEeCCCCCCCcceEEEe
Q 024185 65 LVLLTTA-----LEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEAG-----AIKLFDSRSYDKGPFDTFLV 132 (271)
Q Consensus 65 l~s~~~d-----g~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~ 132 (271)
++.|+.+ ..+.+||..+.+....-... .....+..-+++.++.|+.++ .+.+||..+.+. .....+
T Consensus 65 yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W--~~~~~~ 142 (302)
T 2xn4_A 65 FAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEW--FHVAPM 142 (302)
T ss_dssp EEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEE--EEECCC
T ss_pred EEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeE--eecCCC
Confidence 4455543 35778888776543322211 111112223667777776553 588899887653 111111
Q ss_pred cCCccceEEEEEcCCCcEEEEEecC-------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC----
Q 024185 133 GGDTAEVCDIKFSNDGKSMLLTTTN-------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD---- 201 (271)
Q Consensus 133 ~~~~~~v~~~~~s~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 201 (271)
.........+. -+++.++.|+.+ ..+..||..+.+-...-......... ++.. -++++++.|+.+
T Consensus 143 p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~ 218 (302)
T 2xn4_A 143 NTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLV 218 (302)
T ss_dssp SSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSB
T ss_pred CCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc-cEEE-ECCEEEEECCCCCCcc
Confidence 11111112222 256777776542 45889999877644321111111111 1222 267777787764
Q ss_pred -CcEEEEEcCCceeEEE--ecCCcceeEEEEEecCCcEEEEeC-------CeEEEEcCCCCC
Q 024185 202 -GTLHAWNINTRNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS 253 (271)
Q Consensus 202 -g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~ 253 (271)
..+.+||+.+.+-... +...... .++. .-++++++.|+ .++.+||+++.+
T Consensus 219 ~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 219 RKSVEVYDPTTNAWRQVADMNMCRRN-AGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred cceEEEEeCCCCCEeeCCCCCCcccc-CeEE-EECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 3699999987654332 2111111 1122 23677777775 348999998764
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.012 Score=48.62 Aligned_cols=105 Identities=11% Similarity=0.118 Sum_probs=60.2
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecC------CccceEEEEEcCC---CcEEEEEec------
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG------DTAEVCDIKFSND---GKSMLLTTT------ 156 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------~~~~v~~~~~s~~---~~~l~~~~~------ 156 (271)
....++|.|+|+++++-...+.|++++..+++. .....+.. .......++|+|+ +..|+.+..
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~--~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSV--KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCE--EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE--eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345699999999666654445798888655443 11122211 2456789999995 445544432
Q ss_pred -------CCeEEEEECCCC--e-----EEE-EeecCCCCCceeeEEECCCCCEEEEec
Q 024185 157 -------NNNIYVLDAYGG--E-----KRC-GFSLEPSPNTNTEATFTPDGQYVVSGS 199 (271)
Q Consensus 157 -------d~~i~~~d~~~~--~-----~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~ 199 (271)
...|.-++...+ + .+. .+.. ........+.|.|||++.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEEC
Confidence 235666665322 1 111 1221 1112367899999999777654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0055 Score=48.83 Aligned_cols=143 Identities=15% Similarity=0.174 Sum_probs=80.6
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEE-ecCCccceEEEEEcCC---CcEEEEEec----C----CeE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL-VGGDTAEVCDIKFSND---GKSMLLTTT----N----NNI 160 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~---~~~l~~~~~----d----~~i 160 (271)
...++|.|+|+ |+++..+|.|+++|. +++ ..+.... ..........++++|+ +..|+++.. + ..|
T Consensus 31 P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 31 PWSIAPLGGGR-YLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp EEEEEEEETTE-EEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 45699999998 555566799999973 332 1111111 1112356889999997 445554433 3 578
Q ss_pred EEEECCCC--e-----EE-EEeecCCCCCceeeEEECCCCCEEEEecC-------------CCcEEEEEcCCc-------
Q 024185 161 YVLDAYGG--E-----KR-CGFSLEPSPNTNTEATFTPDGQYVVSGSG-------------DGTLHAWNINTR------- 212 (271)
Q Consensus 161 ~~~d~~~~--~-----~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~------- 212 (271)
..|+.... . .+ ..+.... ......+.|.|||.+.++.+. .|.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~-~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAY-IHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCS-SCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCC-CcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 88887654 1 11 1122111 112456999999987776442 245665555321
Q ss_pred --eeEEEecCCcceeEEEEEec-CCcEEEEeC
Q 024185 213 --NEVACWNGNIGVVACLKWAP-RRAMFVAAS 241 (271)
Q Consensus 213 --~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 241 (271)
..+.. .++.. ...++|+| +|+++++-.
T Consensus 187 ~~~~i~a-~G~rn-p~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 187 PNSPIWS-YGHRN-PQGIDWHRASGVMVATEH 216 (354)
T ss_dssp TTCCEEE-ECCSC-CCEEEECTTTCCEEEEEC
T ss_pred CCCcEEE-EccCC-cceEEEeCCCCCEEEEec
Confidence 11222 23433 46899999 677666543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0041 Score=49.50 Aligned_cols=144 Identities=19% Similarity=0.268 Sum_probs=80.7
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEE-EecCCccceEEEEEcCC---CcEEEEEec-C-----CeEE
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF-LVGGDTAEVCDIKFSND---GKSMLLTTT-N-----NNIY 161 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~---~~~l~~~~~-d-----~~i~ 161 (271)
....++|.|+|+ ++++..+|.|++++ +++...+... ...........++++|+ +..|+++.. . +.|.
T Consensus 32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 345699999998 45556679999998 3332111111 01112356889999998 555555443 2 6788
Q ss_pred EEECCCCeE-----EE-Eeec-CCCCCceeeEEECCCCCEEEEecC-------------CCcEEEEEcCC----------
Q 024185 162 VLDAYGGEK-----RC-GFSL-EPSPNTNTEATFTPDGQYVVSGSG-------------DGTLHAWNINT---------- 211 (271)
Q Consensus 162 ~~d~~~~~~-----~~-~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~---------- 211 (271)
.++...++. +. .+.. .........++|.|||.+.++.+. .|.|.-++...
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 888764421 11 1221 011112457999999986666432 14566666542
Q ss_pred ----ceeEEEecCCcceeEEEEEec-CCcEEEEe
Q 024185 212 ----RNEVACWNGNIGVVACLKWAP-RRAMFVAA 240 (271)
Q Consensus 212 ----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~ 240 (271)
...+.. .++.. ...++|+| +++++++-
T Consensus 189 ~~~~~~~i~a-~G~rn-p~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 189 RRGARPEVYS-LGHRN-PQGLAWHPKTGELFSSE 220 (352)
T ss_dssp CTTSCTTEEE-ECCSE-ECCCEECTTTCCEEEEE
T ss_pred CCCCCccEEE-EcCCC-cccEEEECCCCCEEEEE
Confidence 011111 23433 57899999 66655544
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.011 Score=45.90 Aligned_cols=175 Identities=9% Similarity=0.008 Sum_probs=91.7
Q ss_pred CceEEEEEecCcceeEEE--ecCCcceEEEcCCCCEEEEEecC----CeEEEEeCCCCCCCcceEEEecCCccceEEEEE
Q 024185 71 ALEYGIFVLMLASFQGIL--RLRGRPTVAFDQQGLVFAVAMEA----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF 144 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (271)
...+..||..+++-...- ........+..-+++.++.|+.+ ..+.+||..+.+. .....+.........+.+
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~ 100 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSW--YSKLGPPTPRDSLAACAA 100 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEE--EEEECCSSCCBSCEEEEE
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeE--EECCCCCccccceeEEEE
Confidence 356778888776643221 11111112222366677777654 5788999987664 111112211112222222
Q ss_pred cCCCcEEEEEecC------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC---------CCcEEEEEc
Q 024185 145 SNDGKSMLLTTTN------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG---------DGTLHAWNI 209 (271)
Q Consensus 145 s~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~ 209 (271)
+++.++.|+.+ ..+.+||..+.+-...-...... .-.+++. -+++.++.|+. -..+.+||+
T Consensus 101 --~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 176 (306)
T 3ii7_A 101 --EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR-CSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDP 176 (306)
T ss_dssp --TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC-BSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEET
T ss_pred --CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc-ceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCC
Confidence 67777777754 46899999887643321111111 1111222 36677777764 345889999
Q ss_pred CCceeEEE--ecCCcceeEEEEEecCCcEEEEeC-------CeEEEEcCCCCC
Q 024185 210 NTRNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS 253 (271)
Q Consensus 210 ~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~ 253 (271)
.+.+-... +...... .++. .-++++++.|+ ..+.+||+.+.+
T Consensus 177 ~~~~W~~~~~~p~~r~~-~~~~-~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 177 ATETWTELCPMIEARKN-HGLV-FVKDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp TTTEEEEECCCSSCCBS-CEEE-EETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CCCeEEECCCccchhhc-ceEE-EECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 87654332 2111111 1222 22677777765 358899988754
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.019 Score=44.26 Aligned_cols=174 Identities=6% Similarity=-0.003 Sum_probs=91.8
Q ss_pred ceEEEEEecCcceeEEE--ecCCcceEEEcCCCCEEEEEecC-----CeEEEEeCCCCC---CCcceEEEecCCccceEE
Q 024185 72 LEYGIFVLMLASFQGIL--RLRGRPTVAFDQQGLVFAVAMEA-----GAIKLFDSRSYD---KGPFDTFLVGGDTAEVCD 141 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~ 141 (271)
..+..||..+++....- ........+...+++.++.|+.+ ..+.+||..+.+ . .....+.........
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W--~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW--YSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC--EEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee--EECCCCCCCccceeE
Confidence 46778888776533221 11111122223356777777654 468999998876 4 111112111122222
Q ss_pred EEEcCCCcEEEEEecC-----CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC-----CcEEEEEcCC
Q 024185 142 IKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-----GTLHAWNINT 211 (271)
Q Consensus 142 ~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 211 (271)
+.+ +++.++.|+.+ ..+.+||..+.+-...-......... +++. .+++.++.|+.+ ..+.+||+.+
T Consensus 109 ~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 109 TTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA-GLVV-ASGVIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp EEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred EEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc-eEEE-ECCEEEEECCCCCCcccceEEEEeCCC
Confidence 222 56777777643 46899998877643322211111111 1222 367777777754 4689999887
Q ss_pred ceeEEE--ecCCcceeEEEEEecCCcEEEEeC-------CeEEEEcCCCCC
Q 024185 212 RNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS 253 (271)
Q Consensus 212 ~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~ 253 (271)
.+-... +....... ++. .-++++++.|+ .++.+||+.+.+
T Consensus 185 ~~W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 185 GHWTNVTPMATKRSGA-GVA-LLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp TEEEEECCCSSCCBSC-EEE-EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CcEEeCCCCCcccccc-eEE-EECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 654332 21111111 222 23667777775 358899988764
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.021 Score=44.52 Aligned_cols=171 Identities=9% Similarity=0.130 Sum_probs=84.6
Q ss_pred EEEEEecCcceeEEEecCC---cceEEEcCCCCEEEEEecC-------CeEEEEeCCCCCCCcceEEEecCCccceEEEE
Q 024185 74 YGIFVLMLASFQGILRLRG---RPTVAFDQQGLVFAVAMEA-------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK 143 (271)
Q Consensus 74 i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 143 (271)
+..||..+.+-...-.... ..+++. -+++.++.|+.+ ..+.+||..+.+.. ....+......-. ++
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~-~~ 155 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS--EVKNLPIKVYGHN-VI 155 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE--EECCCSSCEESCE-EE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEe--ECCCCCCcccccE-EE
Confidence 6678887765432211111 112222 266777777653 35888998876531 1111111111111 22
Q ss_pred EcCCCcEEEEEec------CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC-----CcEEEEEcCCc
Q 024185 144 FSNDGKSMLLTTT------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-----GTLHAWNINTR 212 (271)
Q Consensus 144 ~s~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 212 (271)
. .+++.++.|+. -..+.+||..+.+-...-... .+..-.+++. -+++.++.|+.+ ..+.+||+.+.
T Consensus 156 ~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 156 S-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK-TPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp E-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred E-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCC-CCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 2 46677777764 245999999887643321111 1111112222 256777777653 35778998776
Q ss_pred eeEE--EecCCcceeEEEEEecCCcEEEEeC----------------CeEEEEcCCCCC
Q 024185 213 NEVA--CWNGNIGVVACLKWAPRRAMFVAAS----------------SVLSFWIPNPSS 253 (271)
Q Consensus 213 ~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~----------------~~v~iw~~~~~~ 253 (271)
+-.. .++...... ++. .-++++++.|+ .++.+||+++.+
T Consensus 233 ~W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 233 KWEVMTEFPQERSSI-SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp CEEECCCCSSCCBSC-EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred eEEECCCCCCcccce-EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 5332 222111111 222 23567666664 236778877643
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.028 Score=45.62 Aligned_cols=225 Identities=8% Similarity=0.028 Sum_probs=136.5
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC-cceeEEEecC
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML-ASFQGILRLR 91 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~ 91 (271)
+++.-..+..+..++.... ..+..+.-.+..+.--.++++.-. +++ +..|+-|+++. ..+++.+..|
T Consensus 78 ~iiALrag~~lQiFnle~K----~klks~~~~e~VvfWkWis~~~l~-----lVT---~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 78 KVIALKAGKTLQIFNIEMK----SKMKAHTMTDDVTFWKWISLNTVA-----LVT---DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp SCEEEEETTEEEEEETTTT----EEEEEEECSSCCCEEEEEETTEEE-----EEC---SSEEEEEESSSSCCCEEEEECC
T ss_pred cEEEEecCCeEEEEchHHh----hhhcceecCCCceEEEecCCCeEE-----EEc---CCeeEEecccCCCCchhheecc
Confidence 3333334566666666555 444445545555554555554332 222 45699999974 4577777666
Q ss_pred C----cce--EEEcCCCCEEEEEe-------cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC---CcEEEEEe
Q 024185 92 G----RPT--VAFDQQGLVFAVAM-------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---GKSMLLTT 155 (271)
Q Consensus 92 ~----~~~--~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~ 155 (271)
. ... ...++++++++..+ -.|.+.+|..+.+. ...++||.+....+....+ .+.+..+.
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-----sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~ 220 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-----SQPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-----EEEECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-----cchheeeeeeeEEEecCCCCCCceEEEEEE
Confidence 3 122 55578888876542 23678999998765 5667888877766655432 23445554
Q ss_pred cC---CeEEEEECCCC---e-----EEEE--eecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc
Q 024185 156 TN---NNIYVLDAYGG---E-----KRCG--FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI 222 (271)
Q Consensus 156 ~d---~~i~~~d~~~~---~-----~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 222 (271)
.. +.+++.++... . .... +..........++..++.-..++.-+.-|.+++||+.++.++..-+-..
T Consensus 221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~ 300 (494)
T 1bpo_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG 300 (494)
T ss_dssp CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccC
Confidence 43 78999998532 1 1111 1111112345567888888888889999999999999999998766556
Q ss_pred ceeEEEEEecC-CcEEEEeC-CeEEEEcCCCCCC
Q 024185 223 GVVACLKWAPR-RAMFVAAS-SVLSFWIPNPSSN 254 (271)
Q Consensus 223 ~~v~~~~~s~~-~~~l~~~~-~~v~iw~~~~~~~ 254 (271)
..|...+-+.. +-++...- |.|.--.++...+
T Consensus 301 ~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 301 ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp SCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred CceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence 66655555544 33444433 6665555555443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.025 Score=44.96 Aligned_cols=218 Identities=14% Similarity=0.121 Sum_probs=108.3
Q ss_pred eeEEeeecceeeEEEEeeccceeeEE-EEEcccccceEEeeEEecC---CchhhhhhhhhhccC-----ceEEEEEecCc
Q 024185 12 QALLFARQNIILILLESLCGIYQCMI-IEFFATSKGIRRGLFLSAC---LQLMIALCLVLLTTA-----LEYGIFVLMLA 82 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~---~~~~~~~~l~s~~~d-----g~i~iwd~~~~ 82 (271)
..++++...+.+..++ .+...... +..+.........++++|+ +..+ .++-... +.|..++...+
T Consensus 42 G~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~l----Yv~~~~~~~~~~~~v~r~~~~~~ 115 (352)
T 2ism_A 42 GGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYV----YAYRTVAEGGLRNQVVRLRHLGE 115 (352)
T ss_dssp SCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEE----EEEEEECTTSSEEEEEEEEECSS
T ss_pred CeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEE----EEEEecCCCCCccEEEEEEeCCC
Confidence 3466665567777776 33211110 0011222345677999998 4432 2232322 67778887643
Q ss_pred c-----ee-EEEe-----cCCcceEEEcCCCCEEEEEec-------------CCeEEEEeCCCCCC--C--------cce
Q 024185 83 S-----FQ-GILR-----LRGRPTVAFDQQGLVFAVAME-------------AGAIKLFDSRSYDK--G--------PFD 128 (271)
Q Consensus 83 ~-----~~-~~~~-----~~~~~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~~~--~--------~~~ 128 (271)
. .+ ..+. .|....++|.|||.+.++.+. .|.|..++....-. . ...
T Consensus 116 ~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~ 195 (352)
T 2ism_A 116 RGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPE 195 (352)
T ss_dssp CEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTT
T ss_pred CcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCcc
Confidence 2 11 1133 123455999999975554332 25666666653100 0 011
Q ss_pred EEEecCCccceEEEEEcC-CCcEEEEEecCCeE------EEEECCCCe------------------EEEEeecCCCCCce
Q 024185 129 TFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNI------YVLDAYGGE------------------KRCGFSLEPSPNTN 183 (271)
Q Consensus 129 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i------~~~d~~~~~------------------~~~~~~~~~~~~~v 183 (271)
.+. .++. ....++|+| ++.++++-.....+ .+.-+..+. +...+..+ ...
T Consensus 196 i~a-~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~---~ap 270 (352)
T 2ism_A 196 VYS-LGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG---FPP 270 (352)
T ss_dssp EEE-ECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC---CCE
T ss_pred EEE-EcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC---CCC
Confidence 222 2332 356788999 56644443222221 122222221 11111111 124
Q ss_pred eeEEECCCCCEEEEecCCCcEEEEEcCCcee------EEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 184 TEATFTPDGQYVVSGSGDGTLHAWNINTRNE------VACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 184 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
..++| .+|+.+++....+.|...++..... ...+......+..+++.|||.++++..
T Consensus 271 ~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 271 GNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred cceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 45666 4676666666667788887764321 122212235688999999998777664
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.012 Score=46.90 Aligned_cols=147 Identities=12% Similarity=0.156 Sum_probs=80.0
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEE--EecCCccceEEEEEcCC---CcEEEEEe-c-------CC
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF--LVGGDTAEVCDIKFSND---GKSMLLTT-T-------NN 158 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~---~~~l~~~~-~-------d~ 158 (271)
....++|.|+|++++++...|.|++++.......++... ...........++++|+ +..|+... . ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 445699999998455566689999998543211111100 01112346789999996 44454442 2 23
Q ss_pred eEEEEECCCC--e--EEEE-eecCC----CCCceeeEEECCCCCEEEEecC-------------CCcEEEEEcCCc----
Q 024185 159 NIYVLDAYGG--E--KRCG-FSLEP----SPNTNTEATFTPDGQYVVSGSG-------------DGTLHAWNINTR---- 212 (271)
Q Consensus 159 ~i~~~d~~~~--~--~~~~-~~~~~----~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~---- 212 (271)
.|..|++..+ + .... +.... .......+.|.|||.+.++.+. .|.|.-++....
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~ 178 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDD 178 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTT
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCC
Confidence 5666766533 1 1111 11111 1112456999999976665433 246777776422
Q ss_pred ----------eeEEEecCCcceeEEEEEec-CCcEEEEe
Q 024185 213 ----------NEVACWNGNIGVVACLKWAP-RRAMFVAA 240 (271)
Q Consensus 213 ----------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~ 240 (271)
..+.. .++.. ...++|+| +|+++++-
T Consensus 179 npf~~~~~~~~~i~a-~G~rn-p~gl~~d~~~g~l~~~d 215 (353)
T 2g8s_A 179 NPFIKESGVRAEIWS-YGIRN-PQGMAMNPWSNALWLNE 215 (353)
T ss_dssp CTTTTSTTSCTTEEE-ECCSE-EEEEEEETTTTEEEEEE
T ss_pred CCCcCCCCCCccEEE-EcCcC-ccceEEECCCCCEEEEe
Confidence 11222 24443 57999999 66655543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.022 Score=41.75 Aligned_cols=145 Identities=11% Similarity=0.043 Sum_probs=82.6
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCC-cceE-EEec--CCccceEEEEEcCCCcEEEEEecCCeEEEEECCC
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG-PFDT-FLVG--GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~-~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 167 (271)
....++|+|+|.+.++ .+|.++-.+..+.+.. .... ..+. +- ....++.|.|+|.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw-~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGW-NQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCG-GGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccc-ccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 4567999999986555 6888887776553320 0000 1111 11 12578999999987776 569998887543
Q ss_pred CeEEE-----EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCce------eEEEe-cCCcceeEEEEEecCCc
Q 024185 168 GEKRC-----GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN------EVACW-NGNIGVVACLKWAPRRA 235 (271)
Q Consensus 168 ~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~-~~~~~~v~~~~~s~~~~ 235 (271)
...-. .......-..+..+.++|+|.+.+.. |+.++-....++. ....+ ...-..-.-+.|.|++.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 21110 11111111237889999999877766 7765443332211 01111 12222344577999998
Q ss_pred EEEEeCCe
Q 024185 236 MFVAASSV 243 (271)
Q Consensus 236 ~l~~~~~~ 243 (271)
+.+..++.
T Consensus 195 l~~v~~g~ 202 (236)
T 1tl2_A 195 LFGVQGGK 202 (236)
T ss_dssp EEEEETTE
T ss_pred EEEEeCCe
Confidence 87777553
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.033 Score=43.20 Aligned_cols=159 Identities=9% Similarity=0.012 Sum_probs=92.8
Q ss_pred CceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEe--c--CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC
Q 024185 71 ALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAM--E--AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN 146 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 146 (271)
...|+..+++.++... +... ....+++++++|+... . +..|+..++..... . .+..+.. .+++|
T Consensus 87 ~~~Iy~i~~dg~~~~~-l~~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~----~-~lt~~~~----~~~~~ 154 (302)
T 3s25_A 87 RNSLCRIKRNGHGSTV-LDPD--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK----K-KIKNHYL----FTCNT 154 (302)
T ss_dssp SEEEEEEETTSCCCEE-EECS--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC----E-EEESSCC----CCSEE
T ss_pred CCeEEEEeCCCCcceE-eecC--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe----E-EEeCCCc----eEeeE
Confidence 3567777777665333 3222 2347788999888876 2 34566666654442 2 2222322 45678
Q ss_pred CCcEEEEEec-CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC--CcEEEEEcCCceeEEEecCCcc
Q 024185 147 DGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD--GTLHAWNINTRNEVACWNGNIG 223 (271)
Q Consensus 147 ~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~ 223 (271)
+++.|+-.+. ...|...++..+.....+. .. .. ..++|++.+|+....+ ..|..-++.... ...+...
T Consensus 155 ~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~--~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~~-- 225 (302)
T 3s25_A 155 SDRYFYYNNPKNGQLYRYDTASQSEALFYD---CN--CY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTEA-- 225 (302)
T ss_dssp ETTEEEEECTTTCCEEEEETTTTEEEEEEC---SC--EE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSCS--
T ss_pred ECCEEEEEeCCCceEEEEECCCCCEEEEeC---CC--cc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeCC--
Confidence 8888887765 6788888987766443332 11 22 2356999998876543 356666665444 3334322
Q ss_pred eeEEEEEecCCcEEEEeC----CeEEEEcCCCC
Q 024185 224 VVACLKWAPRRAMFVAAS----SVLSFWIPNPS 252 (271)
Q Consensus 224 ~v~~~~~s~~~~~l~~~~----~~v~iw~~~~~ 252 (271)
.+ ..|+|++.+|..++ +.|..-+++..
T Consensus 226 ~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 226 NI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp CE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred Cc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 22 34788888777652 44666666554
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.046 Score=43.27 Aligned_cols=142 Identities=6% Similarity=-0.041 Sum_probs=67.3
Q ss_pred CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec------CCeEEEEEC--CCCeEEEEeecCCCC-Cc
Q 024185 112 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT------NNNIYVLDA--YGGEKRCGFSLEPSP-NT 182 (271)
Q Consensus 112 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~~~d~--~~~~~~~~~~~~~~~-~~ 182 (271)
..+.+||..+.+. .....+......-.+++.. +++.++.|+. ...+..||+ .+.+-.. +.....+ ..
T Consensus 168 ~~v~~yd~~~~~W--~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~-~~~~~~~~~~ 243 (357)
T 2uvk_A 168 KFLLSFDPSTQQW--SYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK-LAPVSSPDGV 243 (357)
T ss_dssp CEEEEEETTTTEE--EEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEE-CCCSSTTTCC
T ss_pred ccEEEEeCCCCcE--EECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEe-cCCCCCCccc
Confidence 5799999988764 1122222111110222222 5666677653 345777887 4443222 1111111 11
Q ss_pred eeeEEECCCCCEEEEecCC----------------------CcEEEEEcCCcee--EEEecCCcceeEEEEEecCCcEEE
Q 024185 183 NTEATFTPDGQYVVSGSGD----------------------GTLHAWNINTRNE--VACWNGNIGVVACLKWAPRRAMFV 238 (271)
Q Consensus 183 v~~~~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~ 238 (271)
....+...+++.++.|+.+ ..+.+||+.+.+- +..+......-. +...++++++
T Consensus 244 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v 321 (357)
T 2uvk_A 244 AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGV--SLPWNNSLLI 321 (357)
T ss_dssp BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSE--EEEETTEEEE
T ss_pred ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccce--eEEeCCEEEE
Confidence 1111233466777777642 2578899876543 333432222212 2334677777
Q ss_pred EeC--------CeEEEEcCCCCCCCcCCC
Q 024185 239 AAS--------SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 239 ~~~--------~~v~iw~~~~~~~~~~~~ 259 (271)
.|+ .++.++++++++......
T Consensus 322 ~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 322 IGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp EEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred EeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 775 236677888877655443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.05 Score=42.68 Aligned_cols=190 Identities=11% Similarity=0.042 Sum_probs=100.4
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec-----CCcceEEEcCCCCEEEEEecCCeEEEEeC
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL-----RGRPTVAFDQQGLVFAVAMEAGAIKLFDS 119 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 119 (271)
...+..+.+.+ +.. ++ ++..+.|.. ..+.++.-..... .....+.+.++++.++++ .+|.|+. ..
T Consensus 79 ~~~~~~i~~~~-~~~-----~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~ 148 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEG-----WI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TK 148 (327)
T ss_dssp CCEEEEEEEET-TEE-----EE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ES
T ss_pred CccEEEEEecC-CeE-----EE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-Ec
Confidence 44677788876 333 22 345564432 2233433222221 123346666666655554 4565432 12
Q ss_pred CCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEEC--CCCeEEEEeecCCCCCceeeEEECCCCCEEEE
Q 024185 120 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA--YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
..++. . ..........+..+.+.|++.+++.+...+..+-.|- .+.+.+. . .....+..+.++++++.++.
T Consensus 149 DgG~t--W-~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~---~-~~~~~~~~~~~~~~g~~~~~ 221 (327)
T 2xbg_A 149 DSGKN--W-QALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN---R-TTSRRLHNMGFTPDGRLWMI 221 (327)
T ss_dssp STTSS--E-EEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE---C-CSSSCEEEEEECTTSCEEEE
T ss_pred CCCCC--C-EEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC---C-CCCCccceeEECCCCCEEEE
Confidence 22332 1 1122344567889999999887766654433333442 2233321 1 11234788899999876654
Q ss_pred ecCCCcEEEEEcCCceeEEEecC----CcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCC
Q 024185 198 GSGDGTLHAWNINTRNEVACWNG----NIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSS 253 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~ 253 (271)
+.+|.++..+...++.-..+.. +...+.++.+.+++.+++++. +.+ .+..+.++
T Consensus 222 -~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~ 280 (327)
T 2xbg_A 222 -VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQ 280 (327)
T ss_dssp -ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTS
T ss_pred -eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCc
Confidence 4567777764332443332221 223578899999888888876 655 44444443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.056 Score=41.67 Aligned_cols=173 Identities=10% Similarity=0.089 Sum_probs=88.8
Q ss_pred ceEEEEEecCcceeEEE--ecCCc-ceEEEcCCCCEEEEEecC-----CeEEEEeCCCCCCCcceEEEecCCccceEEEE
Q 024185 72 LEYGIFVLMLASFQGIL--RLRGR-PTVAFDQQGLVFAVAMEA-----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK 143 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~--~~~~~-~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 143 (271)
..+..||+.+.+....- +.... ..++. -+++.++.|+.+ ..+..||..+.+.. ....+...........
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~--~~~~~p~~r~~~~~~~ 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWT--SVANMRDRRSTLGAAV 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEE--EECCCSSCCBSCEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCcee--eCCCCCccccceEEEE
Confidence 34777888776533221 11111 12222 266677777644 35889998876531 1111111111122222
Q ss_pred EcCCCcEEEEEecC-----CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC-------CcEEEEEcCC
Q 024185 144 FSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-------GTLHAWNINT 211 (271)
Q Consensus 144 ~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~ 211 (271)
-+++.++.|+.+ ..+.+||..+.+-...-.... +..-.+++. -+++.++.|+.+ ..+.+||+.+
T Consensus 107 --~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~ 182 (302)
T 2xn4_A 107 --LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT-RRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATT 182 (302)
T ss_dssp --ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTT
T ss_pred --ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC-cccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCC
Confidence 256777777755 358889988776433211111 111111222 366777777643 3588999987
Q ss_pred ceeEEE--ecCCcceeEEEEEecCCcEEEEeC-------CeEEEEcCCCCC
Q 024185 212 RNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS 253 (271)
Q Consensus 212 ~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~ 253 (271)
.+-... +....... ++. .-++++++.|+ +.+.+||+++.+
T Consensus 183 ~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 183 NEWTYIAEMSTRRSGA-GVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp TEEEEECCCSSCCBSC-EEE-EETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred CcEEECCCCccccccc-cEE-EECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 654332 22111111 222 22677777775 358899987754
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.037 Score=42.89 Aligned_cols=173 Identities=9% Similarity=0.030 Sum_probs=89.0
Q ss_pred ceEEEEEecCcceeEEE--ecCCc-ceEEEcCCCCEEEEEec----C-----CeEEEEeCCCCCCCcceEEEecCCccce
Q 024185 72 LEYGIFVLMLASFQGIL--RLRGR-PTVAFDQQGLVFAVAME----A-----GAIKLFDSRSYDKGPFDTFLVGGDTAEV 139 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~--~~~~~-~~~~~~~~~~~l~~~~~----d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v 139 (271)
..+.+||..+++....- +.... ..++. .+++.++.|+. + ..+.+||..+.+.... ..+.......
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~--~~~p~~r~~~ 115 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPC--APMSVPRNRI 115 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEEC--CCCSSCCBTC
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeEC--CCCCcCcccc
Confidence 45788888776643321 11111 11222 26666666664 2 4688999887653111 1111111122
Q ss_pred EEEEEcCCCcEEEEEecC-----CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC-----CcEEEEEc
Q 024185 140 CDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-----GTLHAWNI 209 (271)
Q Consensus 140 ~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~ 209 (271)
..+.+ +++.++.|+.+ ..+.+||..+.+-...-...........+.+ +++.++.|+.+ ..+.+||+
T Consensus 116 ~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 191 (308)
T 1zgk_A 116 GVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYP 191 (308)
T ss_dssp EEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEET
T ss_pred EEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeC
Confidence 22222 56777776643 4688999887764332111111111112222 66777777754 46899998
Q ss_pred CCceeEEE--ecCCcceeEEEEEecCCcEEEEeC-------CeEEEEcCCCCC
Q 024185 210 NTRNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS 253 (271)
Q Consensus 210 ~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~ 253 (271)
.+.+-... +.........+. . ++++++.|+ .++.+||+.+.+
T Consensus 192 ~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 192 ERNEWRMITAMNTIRSGAGVCV-L-HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp TTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCeEeeCCCCCCccccceEEE-E-CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 87654322 211111112222 2 677777775 358999987764
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00045 Score=54.41 Aligned_cols=109 Identities=10% Similarity=0.097 Sum_probs=70.2
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCC-cceEEEc----CCCCEEEEE--ecCCeEEEEeCCCCCCCcceEEEecC---
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFD----QQGLVFAVA--MEAGAIKLFDSRSYDKGPFDTFLVGG--- 134 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~----~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~--- 134 (271)
++.++.||.|.-.|.++|+.+..++... .+.+... +.+..++.+ +.||.++.++..++.. ...+.-
T Consensus 13 V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~----~~~~~~~~l 88 (339)
T 2be1_A 13 LIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ----KLPLSIRQL 88 (339)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE----EEEEEHHHH
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE----Eeeeccccc
Confidence 5578899999999999999988887651 1223221 112234444 5799999999887653 222211
Q ss_pred -CccceEE---EEE-c----CCCcEEEEEecCCeEEEEECCCCeEEEEeecC
Q 024185 135 -DTAEVCD---IKF-S----NDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 177 (271)
Q Consensus 135 -~~~~v~~---~~~-s----~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 177 (271)
...++.. ... . ..+..+++++.+|++...|+++|+.+..+...
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 0111211 001 0 14567899999999999999999999988654
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.12 Score=44.38 Aligned_cols=194 Identities=9% Similarity=-0.055 Sum_probs=113.3
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec--CCcceEEEcCCCCEEEEE-ecCCeEEEEeCCCCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL--RGRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYD 123 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~ 123 (271)
....+++.+.+..+ +++-...+.|+.++++.......+.. .....+++.+.++.|+.+ +..+.|.+.++....
T Consensus 350 ~~~~ld~d~~~~~l----y~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~ 425 (619)
T 3s94_A 350 HAIAIDYDPVEGYI----YWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM 425 (619)
T ss_dssp SEEEEEEETTTTEE----EEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred ccEEEEEEcCCCeE----EEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence 45568888855543 33545677888888865443333332 234568998766656555 456789999987654
Q ss_pred CCcceEEEecCCccceEEEEEcCCCcEEEEEe--cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec-C
Q 024185 124 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-G 200 (271)
Q Consensus 124 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~ 200 (271)
. .......-.....+++.|....|+.+. ..+.|...++... ....+.. ..-.....+++++++..|+.+. .
T Consensus 426 ~----~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~-~~~~l~~-~~l~~P~GlalD~~~~~LY~aD~~ 499 (619)
T 3s94_A 426 R----KILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS-DRVVLVN-TSLGWPNGLALDYDEGKIYWGDAK 499 (619)
T ss_dssp C----EEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEEC-SSCSCEEEEEEETTTTEEEEEETT
T ss_pred E----EEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC-ccEEEEe-CCCCCCeeeEEcccCCEEEEEECC
Confidence 3 222333446688999999644454443 2467777776533 2233322 1123477899999777777664 4
Q ss_pred CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCCC
Q 024185 201 DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPS 252 (271)
Q Consensus 201 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~ 252 (271)
.+.|...++........+........+++...+ .|..+. +.|...|..++
T Consensus 500 ~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 500 TDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp TTEEEEEESSSCCCEEEEECCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSC
T ss_pred CCEEEEEecCCCceEEEeccCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCC
Confidence 578999988543322222222222345665533 455444 55666666655
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.058 Score=41.89 Aligned_cols=174 Identities=7% Similarity=-0.083 Sum_probs=89.8
Q ss_pred ceEEEEEecCcceeE-EEecC--CcceEEEcCCCCEEEEEec-----C------CeEEEEeCCCCCCCcceEEEecCCcc
Q 024185 72 LEYGIFVLMLASFQG-ILRLR--GRPTVAFDQQGLVFAVAME-----A------GAIKLFDSRSYDKGPFDTFLVGGDTA 137 (271)
Q Consensus 72 g~i~iwd~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~-----d------~~i~i~d~~~~~~~~~~~~~~~~~~~ 137 (271)
..+..||..+++-.. .++.. .........+++.++.|+. . ..+..||..+.+.. ....+.....
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~--~~~~~p~~r~ 90 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL--GMPPLPSPRC 90 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE--ECCCBSSCEE
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE--ECCCCCcchh
Confidence 568889998877433 11111 1122334457777777773 1 13788898876531 1111111111
Q ss_pred ceEEEEEcCCCcEEEEEecC--------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-C-----Cc
Q 024185 138 EVCDIKFSNDGKSMLLTTTN--------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-D-----GT 203 (271)
Q Consensus 138 ~v~~~~~s~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~ 203 (271)
....+.+ +++.++.|+.+ ..+.+||..+.+-...-...... .-.+++ ..+++.++.|+. + ..
T Consensus 91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~-~~~~~iyv~GG~~~~~~~~~~ 166 (315)
T 4asc_A 91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV-YGHTVL-SHMDLVYVIGGKGSDRKCLNK 166 (315)
T ss_dssp SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC-BSCEEE-EETTEEEEECCBCTTSCBCCC
T ss_pred ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc-cceeEE-EECCEEEEEeCCCCCCcccce
Confidence 1112222 56777777632 45899999877543221111111 111122 246677777776 2 46
Q ss_pred EEEEEcCCceeEEE--ecCCcceeEEEEEecCCcEEEEeC-------CeEEEEcCCCCC
Q 024185 204 LHAWNINTRNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS 253 (271)
Q Consensus 204 i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~ 253 (271)
+.+||+.+.+-... +....... ++. .-++++++.|+ ..+.+||+.+.+
T Consensus 167 ~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 167 MCVYDPKKFEWKELAPMQTARSLF-GAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEEEeCCCCeEEECCCCCCchhce-EEE-EECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 89999887654332 22111111 222 22677777765 258889987764
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.061 Score=39.42 Aligned_cols=141 Identities=11% Similarity=0.029 Sum_probs=81.4
Q ss_pred CCEEEEEecCCeEEEEeCCCCCCCcc--eEEEecC-CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE------EE
Q 024185 102 GLVFAVAMEAGAIKLFDSRSYDKGPF--DTFLVGG-DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK------RC 172 (271)
Q Consensus 102 ~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~------~~ 172 (271)
+..|+...+| +++.=.+........ ...++.. .-..+.+++|+|+|.+.++ .+|.++-.+..+.+. -.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 4456666666 665555544442111 1222221 1246789999999986666 778877777644211 11
Q ss_pred EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeE-------EEecCCcceeEEEEEecCCcEEEEeCCeEE
Q 024185 173 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV-------ACWNGNIGVVACLKWAPRRAMFVAASSVLS 245 (271)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~~v~ 245 (271)
.+ +...-.....+.|.|+|.+.++ .||.|+-++..+...- ..-..--..+..+.+.|+|.+.+..++.++
T Consensus 81 ~I-G~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~dg~ly 157 (236)
T 1tl2_A 81 KI-GNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHGQQFY 157 (236)
T ss_dssp EE-ECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEETTEEE
T ss_pred Ee-cccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEeCCcEE
Confidence 11 1111112467899999987777 5698988876442211 111111235789999999998888777654
Q ss_pred EEc
Q 024185 246 FWI 248 (271)
Q Consensus 246 iw~ 248 (271)
-+.
T Consensus 158 r~~ 160 (236)
T 1tl2_A 158 KAL 160 (236)
T ss_dssp EEC
T ss_pred ecC
Confidence 333
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.099 Score=40.62 Aligned_cols=171 Identities=9% Similarity=-0.016 Sum_probs=88.3
Q ss_pred EEEEEecCcceeEEEecC----CcceEEEcCCCCEEEEEec----CC-------eEEEEeCCCCCCCcceEEEecCCccc
Q 024185 74 YGIFVLMLASFQGILRLR----GRPTVAFDQQGLVFAVAME----AG-------AIKLFDSRSYDKGPFDTFLVGGDTAE 138 (271)
Q Consensus 74 i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~----d~-------~i~i~d~~~~~~~~~~~~~~~~~~~~ 138 (271)
+..||..+++... .... .........++..++.|+. ++ .+..||..+.+... ...+......
T Consensus 26 ~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~--~~~~p~~r~~ 102 (318)
T 2woz_A 26 AVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG--LPPLPSARCL 102 (318)
T ss_dssp EEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEE--CSCBSSCBCS
T ss_pred eEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE--CCCCCccccc
Confidence 7788888776543 2211 1122334456777777773 11 27788887765311 1111111111
Q ss_pred eEEEEEcCCCcEEEEEecC-------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC------CCcEE
Q 024185 139 VCDIKFSNDGKSMLLTTTN-------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG------DGTLH 205 (271)
Q Consensus 139 v~~~~~s~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~ 205 (271)
.....+ +++.++.|+.+ ..+.+||..+.+-...-...... .-.+++. .+++.++.|+. -..+.
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 178 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV-YGHNVIS-HNGMIYCLGGKTDDKKCTNRVF 178 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCE-ESCEEEE-ETTEEEEECCEESSSCBCCCEE
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcc-cccEEEE-ECCEEEEEcCCCCCCCccceEE
Confidence 122222 56777777753 35888998877643321111111 0111222 46777777764 23699
Q ss_pred EEEcCCceeEEE--ecCCcceeEEEEEecCCcEEEEeC-------CeEEEEcCCCCC
Q 024185 206 AWNINTRNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS 253 (271)
Q Consensus 206 iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~ 253 (271)
+||+.+.+-... +...... .++.. -++++++.|+ ..+.+||+++.+
T Consensus 179 ~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 179 IYNPKKGDWKDLAPMKTPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EEcCCCCEEEECCCCCCCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 999987654332 2211111 12222 3667777764 347889988765
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.88 E-value=0.21 Score=46.29 Aligned_cols=171 Identities=11% Similarity=0.026 Sum_probs=103.0
Q ss_pred ceEEEEEecCcceeEEEecCC---cce---EEEcCC-CCEEEEEe----------cCCeEEEEeCCCCCCCcceEEEecC
Q 024185 72 LEYGIFVLMLASFQGILRLRG---RPT---VAFDQQ-GLVFAVAM----------EAGAIKLFDSRSYDKGPFDTFLVGG 134 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~~---~~~---~~~~~~-~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~ 134 (271)
+.+++.|..+.+.+..++... +.+ +.|..+ ..++++|. ..|.|++|++..++.+.+....
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~--- 883 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE--- 883 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE---
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE---
Confidence 568888988888777665443 233 334333 46888885 3478999998755432222222
Q ss_pred CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEE--cCCc
Q 024185 135 DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN--INTR 212 (271)
Q Consensus 135 ~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd--~~~~ 212 (271)
.++++++++-- +|+ |++|- ..++++|++...+.++ ......+ .+..+.....+++++.|..-..+.++. ...+
T Consensus 884 v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~~~L~-~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~ 958 (1158)
T 3ei3_A 884 VKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTEKELR-TECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG 958 (1158)
T ss_dssp ESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTTSCEE-EEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTT
T ss_pred cCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCCceEE-EEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCC
Confidence 35778887744 354 44433 4789999998765444 2111111 133334444578899998877777654 4344
Q ss_pred eeEEEe-cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 213 NEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 213 ~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
+....- ..+..+++++.+-.++. ++.++ |++.+...+.
T Consensus 959 ~L~~~a~D~~~~~vta~~~ld~~t-~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 959 NFEEIARDFNPNWMSAVEILDDDN-FLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEEECCSCBCEEEEEEEETTE-EEEEETTSEEEEEEECT
T ss_pred eEEEEEeecccccEEEEEEEccCc-EEEEcCCCcEEEEecCC
Confidence 433322 33456788999876664 44454 8888887765
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.065 Score=44.18 Aligned_cols=104 Identities=11% Similarity=0.026 Sum_probs=56.8
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE--EEec--------CCcceEEEcCC---CCEEEEEec---
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG--ILRL--------RGRPTVAFDQQ---GLVFAVAME--- 110 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~--------~~~~~~~~~~~---~~~l~~~~~--- 110 (271)
.-..+++.|+|+. +++-...+.|++++..+++... .+.. .+...++|+|+ +..|+++..
T Consensus 28 ~P~~~a~~pdG~l-----~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~ 102 (454)
T 1cru_A 28 KPHALLWGPDNQI-----WLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN 102 (454)
T ss_dssp SEEEEEECTTSCE-----EEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred CceEEEEcCCCcE-----EEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence 4457999999986 3333333468888765554322 2211 12235999996 555555532
Q ss_pred ----------CCeEEEEeCCCCCCC---cceEEE-ec-CCccceEEEEEcCCCcEEEEEe
Q 024185 111 ----------AGAIKLFDSRSYDKG---PFDTFL-VG-GDTAEVCDIKFSNDGKSMLLTT 155 (271)
Q Consensus 111 ----------d~~i~i~d~~~~~~~---~~~~~~-~~-~~~~~v~~~~~s~~~~~l~~~~ 155 (271)
...|..++....... ....+. +. ........|+|.|||++.++.+
T Consensus 103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 235666665432110 001111 21 1123468899999998777654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.11 Score=40.17 Aligned_cols=160 Identities=10% Similarity=0.019 Sum_probs=93.0
Q ss_pred CceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecC--------------CeEEEEeCCCCCCCcceEEEecCCc
Q 024185 71 ALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEA--------------GAIKLFDSRSYDKGPFDTFLVGGDT 136 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~~~~~~~~~~~~~~ 136 (271)
++.|+..+.+... ...+... .+--+++++++|+.+... ..|+..++...+. .. +..
T Consensus 36 ~~~ly~~~~dg~~-~~~l~~~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~----~~-l~~-- 105 (302)
T 3s25_A 36 NGRLYAMNIDGSN-IHKLSND--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS----TV-LDP-- 105 (302)
T ss_dssp TTEEEEEETTSCS-CEEEEEE--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC----EE-EEC--
T ss_pred CceEEEEcCCCCC-CEEccCC--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc----eE-eec--
Confidence 4556656654333 3333322 234567899988887643 3677777776653 22 221
Q ss_pred cceEEEEEcCCCcEEEEEe----cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CCcEEEEEcCC
Q 024185 137 AEVCDIKFSNDGKSMLLTT----TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINT 211 (271)
Q Consensus 137 ~~v~~~~~s~~~~~l~~~~----~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 211 (271)
.. ...|++++++|+... .+..|...++.... ...+..+. + ..++|+++.|+..+. ...|...++..
T Consensus 106 ~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~----~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 106 DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHY----L--FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSC----C--CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCC----c--eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 11 236788899888776 24456666665333 34443332 2 345788888886665 56888888876
Q ss_pred ceeEEEecCCcceeEEEEEecCCcEEEEeC----CeEEEEcCCCCC
Q 024185 212 RNEVACWNGNIGVVACLKWAPRRAMFVAAS----SVLSFWIPNPSS 253 (271)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~~v~iw~~~~~~ 253 (271)
+.....+.+. .. ..++|++.+|+-.. ..|..-+++...
T Consensus 177 ~~~~~l~~~~---~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 177 QSEALFYDCN---CY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp TEEEEEECSC---EE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred CCEEEEeCCC---cc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 6544333321 22 34668888877664 245555665544
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0019 Score=50.92 Aligned_cols=190 Identities=11% Similarity=-0.011 Sum_probs=99.9
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEccccc-ceEEeeEE--ec-CCchhhhhhhhhh-ccCceEEEEEecCccee
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFATSK-GIRRGLFL--SA-CLQLMIALCLVLL-TTALEYGIFVLMLASFQ 85 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--s~-~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~ 85 (271)
.+.++++..+|.++.++..+|... -.++... .......- .+ ++.. ++.. ..||.+..++.++|...
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~----W~~~~~~~~p~~~~~~~~~~~~~~~-----~vv~p~~dG~l~a~~~~~G~~~ 80 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHII----WSIEPENFQPLIEIQEPSRLETYET-----LIIEPFGDGNIYYFNAHQGLQK 80 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEE----EEECGGGSCCSEECCCSCTTTSSEE-----EEECCSTTTEEEEEETTTEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEE----EEecCCccCCcEEecCCccccCCcE-----EEEEECCCCEEEEEECCCCcEE
Confidence 457788899999999998888322 2233320 11111100 01 2222 2222 68999999999888655
Q ss_pred EEEecCC---cceEEEc-----------CCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc--cc-----eEEEEE
Q 024185 86 GILRLRG---RPTVAFD-----------QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT--AE-----VCDIKF 144 (271)
Q Consensus 86 ~~~~~~~---~~~~~~~-----------~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~~-----v~~~~~ 144 (271)
..+.... ..-+... ..+..+++|+.+|.+...|+.+++. ...+.... +. ..|...
T Consensus 81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~----~W~~~~~~~~~~~~~~~e~~~~~ 156 (339)
T 2be1_A 81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI----ISAFGPGSKNGYFGSQSVDCSPE 156 (339)
T ss_dssp EEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE----EEEESTTCBCC------------
T ss_pred eeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE----EEEEecCCCcccccccccccccc
Confidence 5444321 1112211 1456789999999999999999986 44443211 10 111211
Q ss_pred c-----CCCcEEEEEecCCeEEEEECCCCeEEEEeec-----CCCCCce-eeEEECCCCCEEEEecCCCcEEEEEcCCce
Q 024185 145 S-----NDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-----EPSPNTN-TEATFTPDGQYVVSGSGDGTLHAWNINTRN 213 (271)
Q Consensus 145 s-----~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 213 (271)
. ..+..++.+..+..+.+.+ ++|+ +..+.. ......+ ..-..+.|+.+ +.++.||.|.-+|..+|+
T Consensus 157 ~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~ 233 (339)
T 2be1_A 157 EKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRI 233 (339)
T ss_dssp --------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCC
T ss_pred cccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCc
Confidence 1 1234677777777777766 4453 222211 0000000 00011234555 446778888888887777
Q ss_pred eEE
Q 024185 214 EVA 216 (271)
Q Consensus 214 ~~~ 216 (271)
.+.
T Consensus 234 ~~W 236 (339)
T 2be1_A 234 ARW 236 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.061 Score=50.24 Aligned_cols=180 Identities=7% Similarity=0.008 Sum_probs=102.2
Q ss_pred CceEEEEEecC-cceeEEEecCC------cceEEEcCCCCEEEEEe-------cCCeEEEEeCCCCCCCcceEEEecCCc
Q 024185 71 ALEYGIFVLML-ASFQGILRLRG------RPTVAFDQQGLVFAVAM-------EAGAIKLFDSRSYDKGPFDTFLVGGDT 136 (271)
Q Consensus 71 dg~i~iwd~~~-~~~~~~~~~~~------~~~~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~~~ 136 (271)
+..|+-|+++. ..+++.+..|. +-....+++.++++..+ -.|.+.+|..+.+. ...+.||.
T Consensus 124 ~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-----sQ~iegha 198 (1630)
T 1xi4_A 124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-----SQPIEGHA 198 (1630)
T ss_pred CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-----chhhhHhH
Confidence 44699999964 34555554442 22245577788776442 34788999987655 34456776
Q ss_pred cceEEEEEcC---CCcEEEEEec---CCeEEEEECCCC---eEE------EE-eecCCCCCceeeEEECCCCCEEEEecC
Q 024185 137 AEVCDIKFSN---DGKSMLLTTT---NNNIYVLDAYGG---EKR------CG-FSLEPSPNTNTEATFTPDGQYVVSGSG 200 (271)
Q Consensus 137 ~~v~~~~~s~---~~~~l~~~~~---d~~i~~~d~~~~---~~~------~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~ 200 (271)
+....+.... ..+.+..+.. .+.+++-++... ... .. +..........++..++.-..+..-+.
T Consensus 199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk 278 (1630)
T 1xi4_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (1630)
T ss_pred hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec
Confidence 6665554432 1233333332 368888888542 111 00 111111123445677777778888888
Q ss_pred CCcEEEEEcCCceeEEEecCCcceeEEEEEec-CCcEEEEeC-CeEEEEcCCCCCCC
Q 024185 201 DGTLHAWNINTRNEVACWNGNIGVVACLKWAP-RRAMFVAAS-SVLSFWIPNPSSNS 255 (271)
Q Consensus 201 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~-~~v~iw~~~~~~~~ 255 (271)
-|.++++|+.++.++..-+-...+|...+-+. .+-.+...- |.|.--.++...+.
T Consensus 279 ~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 279 YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred CceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 99999999999998875544444454444333 233443333 65555555544443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.39 Score=42.31 Aligned_cols=193 Identities=12% Similarity=0.015 Sum_probs=112.3
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe--cCCcceEEEcCCCCEEEEEecCCeEEEEeCCCC
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR--LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSY 122 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 122 (271)
...|.++....++.. ..++.+| +..||..+.+...... ...+.++.. .++ .|..++.+ .+..||..+.
T Consensus 62 ~~~i~~i~~d~~g~l------WigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~ 131 (758)
T 3ott_A 62 NTRIYCGVIIDNTYL------YMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSR 131 (758)
T ss_dssp SSCEEEEEEETTTEE------EEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTC
T ss_pred CceEEEEEEcCCCcE------EEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCC
Confidence 345777777777764 3445555 7789987764322111 112333433 344 46666655 6888998765
Q ss_pred CCCcceEEEe---cCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCC----CCCceeeEEECCCCCEE
Q 024185 123 DKGPFDTFLV---GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP----SPNTNTEATFTPDGQYV 195 (271)
Q Consensus 123 ~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l 195 (271)
+. ..... .-....|.++...++|... .++.+ -+..+|..+++... +.... ....|.++...+++..|
T Consensus 132 ~~---~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~l 205 (758)
T 3ott_A 132 KL---TSFDTRRNGLPNNTIYSIIRTKDNQIY-VGTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCV 205 (758)
T ss_dssp CE---EEECHHHHCCSCSCEEEEEECTTCCEE-EEETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEE
T ss_pred eE---EEeccCCCCcCCCeEEEEEEcCCCCEE-EEeCC-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEE
Confidence 52 11100 0113468888888777744 45554 57888877765432 22111 11237778777776644
Q ss_pred EEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeCCeEEEEcCCCCCC
Q 024185 196 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSN 254 (271)
Q Consensus 196 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~v~iw~~~~~~~ 254 (271)
-.|+. +-+..+|..+++...........|.++...++|.+.+...+-+.+++..+++.
T Consensus 206 Wigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~ 263 (758)
T 3ott_A 206 WIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPL 263 (758)
T ss_dssp EEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEETTEEEEECCTTSCC
T ss_pred EEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeCCceeEEecCCCcE
Confidence 44554 35888898776543221112345888888888887766566688888877654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.23 Score=39.46 Aligned_cols=216 Identities=13% Similarity=0.121 Sum_probs=112.8
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEE---cccccceEEeeEEecC---Cchhhhhhhhhhc---cC----ceEEEEE
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEF---FATSKGIRRGLFLSAC---LQLMIALCLVLLT---TA----LEYGIFV 78 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~---~~~~~~~~l~s~~---~d----g~i~iwd 78 (271)
..++++...+.+..++ ..+. ..+.. +.........++++|+ +..+ .++-+ .+ ..|..|+
T Consensus 40 G~l~V~e~~g~I~~~d-~~G~---~~~~~~~v~~~g~~g~~gia~~pdf~~~g~l----yv~~~~~~~~~~~~~~v~r~~ 111 (354)
T 3a9g_A 40 GRYLVTERPGRLVLIS-PSGK---KLVASFDVANVGEAGLLGLALHPEFPKKSWV----YLYASYFAEGGHIRNRVIRGR 111 (354)
T ss_dssp TEEEEEETTTEEEEEC-SSCE---EEEEECCCCCSTTCSEEEEEECTTTTTSCEE----EEEEEEECGGGCEEEEEEEEE
T ss_pred CeEEEEeCCCEEEEEe-CCCc---eEeeccceeecCCCceeeEEeCCCCCcCCEE----EEEEeccCCCCCcceEEEEEE
Confidence 4566666667777775 2332 11111 1222345678999997 3332 22222 13 5677777
Q ss_pred ecCc--c---e--e-EEEe---cCCcceEEEcCCCCEEEEEec-------------CCeEEEEeCCCCCC--Cc---ceE
Q 024185 79 LMLA--S---F--Q-GILR---LRGRPTVAFDQQGLVFAVAME-------------AGAIKLFDSRSYDK--GP---FDT 129 (271)
Q Consensus 79 ~~~~--~---~--~-~~~~---~~~~~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~~~--~~---~~~ 129 (271)
.... . . + ..+. .|....++|.|||.+.++.+. .|.|..++....-. .+ ...
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i 191 (354)
T 3a9g_A 112 LDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPI 191 (354)
T ss_dssp ECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCE
T ss_pred ECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcE
Confidence 7544 1 1 1 1122 234455999999986555332 24566666543200 00 012
Q ss_pred EEecCCccceEEEEEcC-CCcEEEEEecCC---eEEEEECCCCe------------------EEEEeecCCCCCceeeEE
Q 024185 130 FLVGGDTAEVCDIKFSN-DGKSMLLTTTNN---NIYVLDAYGGE------------------KRCGFSLEPSPNTNTEAT 187 (271)
Q Consensus 130 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~---~i~~~d~~~~~------------------~~~~~~~~~~~~~v~~~~ 187 (271)
+. .++. ....++|+| +++++++-.... .|.+.. .+. ++..+. ........+.
T Consensus 192 ~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~~~ap~G~~ 265 (354)
T 3a9g_A 192 WS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG--SETWAPSGAS 265 (354)
T ss_dssp EE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT--TCCCCEEEEE
T ss_pred EE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC--CCCcCCcceE
Confidence 22 2333 345789999 566444332211 233322 121 111110 1112366677
Q ss_pred EC-------CCCCEEEEecCCCcEEEEEcCCc-eeE--EEe-cCCcceeEEEEEecCCcEEEEeC
Q 024185 188 FT-------PDGQYVVSGSGDGTLHAWNINTR-NEV--ACW-NGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 188 ~~-------~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~-~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
|. .+|+++++....+.|...++... +.. ..+ .+....+..+++.|||.+.++..
T Consensus 266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 73 46777777666788988888753 322 233 22245688999999998777653
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.45 Score=41.58 Aligned_cols=179 Identities=9% Similarity=0.025 Sum_probs=95.5
Q ss_pred ceEEEEEecCcceeEEE-e-----cCC---cceEEEcC-CCCEEEEEecC------CeEEEEeCCCCCCCcceEEEecCC
Q 024185 72 LEYGIFVLMLASFQGIL-R-----LRG---RPTVAFDQ-QGLVFAVAMEA------GAIKLFDSRSYDKGPFDTFLVGGD 135 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~-~-----~~~---~~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~ 135 (271)
..+.+||..+++....- . ... ..+++..+ +++.++.|+.+ ..+.+||..+.+... ...+...
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~--~~~~p~~ 489 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSM--IKSLSHT 489 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEE--CCCCSBC
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEE--CCCCCCC
Confidence 46788898877644332 2 111 12233333 77777777643 358889988765311 1111111
Q ss_pred ccceEEEEEcCCCcEEEEEecCC--eEEEEECCCCeEEEEee---cCCCCCceeeEEECCC-CCEEEEecC--C-----C
Q 024185 136 TAEVCDIKFSNDGKSMLLTTTNN--NIYVLDAYGGEKRCGFS---LEPSPNTNTEATFTPD-GQYVVSGSG--D-----G 202 (271)
Q Consensus 136 ~~~v~~~~~s~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----g 202 (271)
.. -.+.+...+++.++.|+.++ .+.+||..+.+-...-. ..........+.+..+ ++.++.|+. + +
T Consensus 490 R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~ 568 (695)
T 2zwa_A 490 RF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSD 568 (695)
T ss_dssp CB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCC
T ss_pred cc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeC
Confidence 11 12233324788888887654 69999998876433211 1111111223555555 677777776 2 3
Q ss_pred cEEEEEcCCce------e--EEEecCCcceeEEEEEecCCcEEEEeC----------CeEEEEcCCCCC
Q 024185 203 TLHAWNINTRN------E--VACWNGNIGVVACLKWAPRRAMFVAAS----------SVLSFWIPNPSS 253 (271)
Q Consensus 203 ~i~iwd~~~~~------~--~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~~v~iw~~~~~~ 253 (271)
.+.+||+.+.+ - +.........-.++....++++++.|+ ..+.+||+.+.+
T Consensus 569 ~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 569 KAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp EEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred cEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 58899998776 1 111111111112333344477777765 238899988764
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.2 Score=43.77 Aligned_cols=168 Identities=7% Similarity=0.001 Sum_probs=85.3
Q ss_pred eEEEEEecCcceeEEE--ecCCc-ceEEEcCCCCEEEEEecCC--eEEEEeCCCCCCCcceEE-EecCCccceEEEEEcC
Q 024185 73 EYGIFVLMLASFQGIL--RLRGR-PTVAFDQQGLVFAVAMEAG--AIKLFDSRSYDKGPFDTF-LVGGDTAEVCDIKFSN 146 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~--~~~~~-~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~s~ 146 (271)
.+.+||..+.+....- ..... .+.+...+++.++.|+.++ .+.+||..+.+....... ..........++.+..
T Consensus 469 dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~ 548 (695)
T 2zwa_A 469 DNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDP 548 (695)
T ss_dssp CCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEET
T ss_pred cEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeC
Confidence 5778888776533221 11111 2233334788888887654 799999987653111000 0111112223355565
Q ss_pred C-CcEEEEEec--C-----CeEEEEECCCCeE-----EEEeecC-CCCCceeeEEECCCCCEEEEecC--------CCcE
Q 024185 147 D-GKSMLLTTT--N-----NNIYVLDAYGGEK-----RCGFSLE-PSPNTNTEATFTPDGQYVVSGSG--------DGTL 204 (271)
Q Consensus 147 ~-~~~l~~~~~--d-----~~i~~~d~~~~~~-----~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--------dg~i 204 (271)
+ ++.++.|+. + ..+..||+.+.+. -..+... ..+..-.++....+++.++.|+. ...+
T Consensus 549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v 628 (695)
T 2zwa_A 549 VSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSI 628 (695)
T ss_dssp TTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSE
T ss_pred CCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeE
Confidence 5 677777765 2 4689999987761 1112111 11111112333334777777774 3469
Q ss_pred EEEEcCCceeEEEecCCcce---------eEEEEEecCCcEEEEeC
Q 024185 205 HAWNINTRNEVACWNGNIGV---------VACLKWAPRRAMFVAAS 241 (271)
Q Consensus 205 ~iwd~~~~~~~~~~~~~~~~---------v~~~~~s~~~~~l~~~~ 241 (271)
.+||+.+.+-. ........ -.+....+++++++.|+
T Consensus 629 ~~yd~~t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GG 673 (695)
T 2zwa_A 629 ISLDPLSETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673 (695)
T ss_dssp EEEETTTTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECC
T ss_pred EEEECCCCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeC
Confidence 99999877654 22111100 02334445667777776
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.18 Score=39.89 Aligned_cols=134 Identities=7% Similarity=0.009 Sum_probs=67.1
Q ss_pred cCceEEEEEecC--cceeE--EEe-cCCc-ceEEEcCCCCEEEEEec-C---------CeEEEEeCCCCCCCcceEEEec
Q 024185 70 TALEYGIFVLML--ASFQG--ILR-LRGR-PTVAFDQQGLVFAVAME-A---------GAIKLFDSRSYDKGPFDTFLVG 133 (271)
Q Consensus 70 ~dg~i~iwd~~~--~~~~~--~~~-~~~~-~~~~~~~~~~~l~~~~~-d---------~~i~i~d~~~~~~~~~~~~~~~ 133 (271)
....+..+|..+ .+... .+. .... .+++. -+++.++.|+. + ..+.+||..+.+..... .+.
T Consensus 29 ~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~ 105 (357)
T 2uvk_A 29 AGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLM--SHA 105 (357)
T ss_dssp GTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECS--CCC
T ss_pred CCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECC--CCC
Confidence 345688888864 32221 112 1111 11222 25666666665 2 46899999876531111 111
Q ss_pred -CCccceEEEEEcCCCcEEEEEecC---------------------------------------CeEEEEECCCCeEEEE
Q 024185 134 -GDTAEVCDIKFSNDGKSMLLTTTN---------------------------------------NNIYVLDAYGGEKRCG 173 (271)
Q Consensus 134 -~~~~~v~~~~~s~~~~~l~~~~~d---------------------------------------~~i~~~d~~~~~~~~~ 173 (271)
.......++. .+++.++.|+.+ ..+.+||..+.+-...
T Consensus 106 p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 183 (357)
T 2uvk_A 106 PMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYA 183 (357)
T ss_dssp SSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEE
T ss_pred CcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEEC
Confidence 1111122222 567778888754 5799999988764433
Q ss_pred eecCCCCCceeeEEECCCCCEEEEecC------CCcEEEEEc
Q 024185 174 FSLEPSPNTNTEATFTPDGQYVVSGSG------DGTLHAWNI 209 (271)
Q Consensus 174 ~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~ 209 (271)
-........-.+++. -++++++.|+. ...+..||+
T Consensus 184 ~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 184 GESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp EECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred CCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEe
Confidence 221111111022222 25667777764 235777876
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.067 Score=44.84 Aligned_cols=102 Identities=15% Similarity=0.050 Sum_probs=67.5
Q ss_pred cceEEEEEcCCCcEEEEEec-CCeEEEEECCC------CeE-------EEEeecCCCCCceeeEEECCCCCEEEEecCCC
Q 024185 137 AEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYG------GEK-------RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 202 (271)
Q Consensus 137 ~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~------~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 202 (271)
.....+..+|||++++.++. +.++.++|.+. ++. ....... ......+|+++|+-..+-..|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G---lGPlHt~Fd~~G~aYTtlfidS 399 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG---LGPLHTTFDGRGNAYTTLFIDS 399 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC---SCEEEEEECSSSEEEEEETTTT
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC---CcccEEEECCCCceEeeeeecc
Confidence 34567889999999988876 88999999873 111 1122211 2366789999995555666799
Q ss_pred cEEEEEcCCc----------eeEEEecCCcceeEEE-----EEecCCcEEEEeC
Q 024185 203 TLHAWNINTR----------NEVACWNGNIGVVACL-----KWAPRRAMFVAAS 241 (271)
Q Consensus 203 ~i~iwd~~~~----------~~~~~~~~~~~~v~~~-----~~s~~~~~l~~~~ 241 (271)
.|.-|++... ..+..+.-|-.+-... .-.|||++|++..
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 9999998753 4566666554432211 1256788888774
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.43 Score=40.17 Aligned_cols=101 Identities=12% Similarity=0.110 Sum_probs=65.2
Q ss_pred EEEcCCCCEEEEEec-CCeEEEEeCCCC------CC-CcceEE--EecCCccceEEEEEcCCCcEEEEEecCCeEEEEEC
Q 024185 96 VAFDQQGLVFAVAME-AGAIKLFDSRSY------DK-GPFDTF--LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~-d~~i~i~d~~~~------~~-~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 165 (271)
+..+|||+++++++. +.++.++|.+.. +. .+.... ... -.-.....+|.++|.-..+.--|..|.-|++
T Consensus 328 v~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni 406 (638)
T 3sbq_A 328 CNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNM 406 (638)
T ss_dssp EEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred eeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEEec
Confidence 889999999888754 678999998741 11 111111 111 1234677899999954445556999999998
Q ss_pred CCC----------eEEEEeecCCCCCceeeEEE------CCCCCEEEEecC
Q 024185 166 YGG----------EKRCGFSLEPSPNTNTEATF------TPDGQYVVSGSG 200 (271)
Q Consensus 166 ~~~----------~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~ 200 (271)
... ..+.++..|..+ -.+.- .|||++|++...
T Consensus 407 ~~a~~~~~g~~~~~v~~k~dv~Yqp---GH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 407 EEAVRAYKGEKVNYIKQKLDVHYQP---GHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp HHHHHHHTTCCCCCEEEEEECSSCE---EEEEETTTTSTTCCSCEEEEEES
T ss_pred cHHHHHhcCccCCeeeeccccccCC---cccccCCCccCCCCccEEEEecc
Confidence 642 455666666553 22322 588999998743
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.42 Score=44.96 Aligned_cols=197 Identities=8% Similarity=0.066 Sum_probs=110.3
Q ss_pred eEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceE
Q 024185 51 LFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT 129 (271)
Q Consensus 51 ~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 129 (271)
...+|..+.++. -...++.|||+++...++.+...+ +..-.|-.+ +.|+..+ +..|+-|++.... .|...
T Consensus 71 AIMnP~~~iiAL------rag~~lQiFnl~~k~klks~~~~e~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s-~P~k~ 141 (1630)
T 1xi4_A 71 AIMNPASKVIAL------KAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGES-QPVKM 141 (1630)
T ss_pred hccCCCcceEEE------ecCCeEEEeehHHhhhhcccccCCCceEEEecCC-CeeEEEc-CCeEEEeccCCCC-ccHHH
Confidence 445777765322 236889999999988877776654 333556433 3455555 4689999997533 33333
Q ss_pred EEecC--CccceEEEEEcCCCcEEEEEe-------cCCeEEEEECCCCeEEEEeecCCCCCceeeEEEC---CCCCEEEE
Q 024185 130 FLVGG--DTAEVCDIKFSNDGKSMLLTT-------TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT---PDGQYVVS 197 (271)
Q Consensus 130 ~~~~~--~~~~v~~~~~s~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~ 197 (271)
+...+ ....|..-.-+++.++++..+ -.|.+.+|..+.+. .+.+.+|... ...+... +..+.+..
T Consensus 142 fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~--F~~~~~~~~~~~~~l~~f 218 (1630)
T 1xi4_A 142 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAAS--FAQFKMEGNAEESTLFCF 218 (1630)
T ss_pred HhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhh--hheeccCCCCCCceEEEE
Confidence 32111 035677778889999887544 25889999876442 2334444332 1111111 11222222
Q ss_pred ecC---CCcEEEEEcCCc---eeEE------E-ecC--CcceeEEEEEecCCcEEEEe--CCeEEEEcCCCCCCCcCCC
Q 024185 198 GSG---DGTLHAWNINTR---NEVA------C-WNG--NIGVVACLKWAPRRAMFVAA--SSVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 198 ~~~---dg~i~iwd~~~~---~~~~------~-~~~--~~~~v~~~~~s~~~~~l~~~--~~~v~iw~~~~~~~~~~~~ 259 (271)
+.. .+.++|-++... .... . ++. -..-..++..++....+..- .|-+.+||++++.++-...
T Consensus 219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 211 368888887542 1111 1 111 11223466677755444333 3999999999998765443
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=94.88 E-value=1.3 Score=36.59 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=61.5
Q ss_pred CcceEEEcCCCC-EEEEEecCCeEEEEeCCCCC-CCcceEEE--ec-----CCccceEEEEEcCC----CcEEEEEec--
Q 024185 92 GRPTVAFDQQGL-VFAVAMEAGAIKLFDSRSYD-KGPFDTFL--VG-----GDTAEVCDIKFSND----GKSMLLTTT-- 156 (271)
Q Consensus 92 ~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~--~~-----~~~~~v~~~~~s~~----~~~l~~~~~-- 156 (271)
....++|.||+. .++++...|.|++++..... ..++.... +. ........|+++|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 446699999996 56677788999999754321 11111110 11 11456889999996 443333222
Q ss_pred C----------CeEEEEECCC----------CeEEEEeecCCCCCceeeEEECCCCCEEEEecC
Q 024185 157 N----------NNIYVLDAYG----------GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 200 (271)
Q Consensus 157 d----------~~i~~~d~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 200 (271)
+ ..|.-|.+.. .+.+..+........-..+.|.|||.+.++.+.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1444465532 123333332222233677999999987776554
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=94.79 E-value=1.2 Score=35.26 Aligned_cols=67 Identities=9% Similarity=0.059 Sum_probs=43.0
Q ss_pred eeeEEECC-------CCCEEEEecCCCcEEEEEcCCceeEEE--e-cCCcceeEEEEEecCCcEEEEeC-CeEEEEcC
Q 024185 183 NTEATFTP-------DGQYVVSGSGDGTLHAWNINTRNEVAC--W-NGNIGVVACLKWAPRRAMFVAAS-SVLSFWIP 249 (271)
Q Consensus 183 v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~--~-~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~ 249 (271)
...+.|.+ +|+++++....+.|...++..++.... + ......+..+++.|||.++++.. ..=+||.+
T Consensus 273 p~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~ri 350 (353)
T 2g8s_A 273 VSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKV 350 (353)
T ss_dssp EEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEEEE
T ss_pred cceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEEEE
Confidence 45566653 466777666678888888876554332 2 22234689999999999777644 33455543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=93.80 E-value=2.1 Score=35.35 Aligned_cols=103 Identities=12% Similarity=0.184 Sum_probs=59.8
Q ss_pred cceEEEEEcCCCc-EEEEEecCCeEEEEECCCCe---EEEEeec--CC-----CCCceeeEEECCC----CCEEEEecC-
Q 024185 137 AEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGE---KRCGFSL--EP-----SPNTNTEATFTPD----GQYVVSGSG- 200 (271)
Q Consensus 137 ~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~---~~~~~~~--~~-----~~~~v~~~~~~~~----~~~l~~~~~- 200 (271)
.....|+|.|||. .++++...|.|++++..... .+..+.. .. .......++|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567899999996 56777889999999753221 1121110 10 1234788999997 443333221
Q ss_pred -C----------CcEEEEEcCC----------ceeEEEec----CCcceeEEEEEecCCcEEEEeC
Q 024185 201 -D----------GTLHAWNINT----------RNEVACWN----GNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 201 -d----------g~i~iwd~~~----------~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
+ ..|.-|.+.. .+.+..+. .|. -..|.|.|||.+.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILG 157 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEEC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeC
Confidence 1 1344465532 12333332 343 47899999998766654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=93.79 E-value=2.3 Score=34.74 Aligned_cols=163 Identities=10% Similarity=0.067 Sum_probs=99.2
Q ss_pred ceEEeeEEecCCchhhhhhhh--hhccCceEEEEEecCcceeEEEecCCcceEEEcCCC-----CEEEEEecC---CeEE
Q 024185 46 GIRRGLFLSACLQLMIALCLV--LLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQG-----LVFAVAMEA---GAIK 115 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~d---~~i~ 115 (271)
..+..-..+++.++++..-+. .+.-.|.+.+|..+.+. -+.+++|......+-.+| ..++.+... +.++
T Consensus 151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLh 229 (494)
T 1bpo_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH 229 (494)
T ss_dssp CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEE
T ss_pred ceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEE
Confidence 355556678888874331110 12235788899886544 567778866555554443 245555432 7899
Q ss_pred EEeCCCC--CCCcceEEEec------CCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEE
Q 024185 116 LFDSRSY--DKGPFDTFLVG------GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 187 (271)
Q Consensus 116 i~d~~~~--~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~ 187 (271)
+-++... ...++...... ...+-.-++..|+....++.-+.-|.+++||+.++.++..-.....+ |...+
T Consensus 230 i~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~--iF~t~ 307 (494)
T 1bpo_A 230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET--IFVTA 307 (494)
T ss_dssp EEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEE
T ss_pred EEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCc--eEEec
Confidence 9998543 11122221111 12344567888888888889999999999999999998876655554 44344
Q ss_pred ECCCCCEEEEecCCCcEEEEEcCC
Q 024185 188 FTPDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 188 ~~~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
.+....-++.....|.|.--.+..
T Consensus 308 ~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 308 PHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp EETTTTEEEEEETTCEEEEEEECT
T ss_pred ccCCCCcEEEEccCceEEEEEEcc
Confidence 444444455555666665555544
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=93.48 E-value=3.7 Score=36.10 Aligned_cols=212 Identities=8% Similarity=0.016 Sum_probs=113.8
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe--
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR-- 89 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-- 89 (271)
..|.+++.+| +..++........ ........+.++.. .++.. ..++.+ -+..+|.++++.. .+.
T Consensus 74 g~lWigT~~G-l~~yd~~~~~f~~----~~~~~~~~i~~i~~-~~g~l------Wigt~~-Gl~~~~~~~~~~~-~~~~~ 139 (758)
T 3ott_A 74 TYLYMGTDNG-ILVYNYRADRYEQ----PETDFPTDVRTMAL-QGDTL------WLGALN-GLYTYQLQSRKLT-SFDTR 139 (758)
T ss_dssp TEEEEEETTE-EEEEETTTTEECC----CSCCCCSCEEEEEE-ETTEE------EEEETT-EEEEEETTTCCEE-EECHH
T ss_pred CcEEEEeCCC-eEEEeCCCCEEEC----cccCCCceEEEEEe-cCCcE------EEEcCC-cceeEeCCCCeEE-EeccC
Confidence 4556666443 5566654442111 01111234555543 35543 234444 5778888765543 231
Q ss_pred -----cCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecC----CccceEEEEEcCCCcEEEEEecCCeE
Q 024185 90 -----LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG----DTAEVCDIKFSNDGKSMLLTTTNNNI 160 (271)
Q Consensus 90 -----~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i 160 (271)
...+.++....++... .++.+ -+..++..+.+. ....... ....|.++...+++..|..|+. +-+
T Consensus 140 ~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~---~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl 213 (758)
T 3ott_A 140 RNGLPNNTIYSIIRTKDNQIY-VGTYN-GLCRYIPSNGKF---EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYL 213 (758)
T ss_dssp HHCCSCSCEEEEEECTTCCEE-EEETT-EEEEEETTTTEE---EEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEE
T ss_pred CCCcCCCeEEEEEEcCCCCEE-EEeCC-CHhhCccCCCce---EEecCCCccccccceeEEEEEECCCCEEEEEEC-CCC
Confidence 1224446666666644 45544 577888766542 1111111 1234888888877776666664 468
Q ss_pred EEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec-------CCcceeEEEEEecC
Q 024185 161 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-------GNIGVVACLKWAPR 233 (271)
Q Consensus 161 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~ 233 (271)
..+|..+++......... ..|.++...++|.+.+.. .+ -+.+++..+++...... -....|.++....+
T Consensus 214 ~~~~~~~~~~~~~~~l~~--~~i~~i~~d~~g~lWigT-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~ 289 (758)
T 3ott_A 214 FQYFPSTGQIKQTEAFHN--NSIKSLALDGNGDLLAGT-DN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE 289 (758)
T ss_dssp EEEETTTTEEEEEEEEEE--EEEEEEEECTTCCEEEEE-TT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT
T ss_pred eEEcCCCCeEEeccCCCC--CeEEEEEEcCCCCEEEEe-CC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC
Confidence 889987765432211111 237788888888765543 44 47888877654432211 01235888888888
Q ss_pred CcEEEEeCCeEEEE
Q 024185 234 RAMFVAASSVLSFW 247 (271)
Q Consensus 234 ~~~l~~~~~~v~iw 247 (271)
|.+.+...+-+.++
T Consensus 290 g~lWiGT~~Gl~~~ 303 (758)
T 3ott_A 290 HNIWLGTDYGISLS 303 (758)
T ss_dssp CCEEEEESSSEEEE
T ss_pred CCEEEEeCCccccc
Confidence 87666554224443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=91.75 E-value=4 Score=32.20 Aligned_cols=220 Identities=13% Similarity=0.143 Sum_probs=110.7
Q ss_pred eeEEeeec-ceeeEEEEeeccceeeEEEEE----cccccceEEeeEEecC----CchhhhhhhhhhccCceEEEEEecCc
Q 024185 12 QALLFARQ-NIILILLESLCGIYQCMIIEF----FATSKGIRRGLFLSAC----LQLMIALCLVLLTTALEYGIFVLMLA 82 (271)
Q Consensus 12 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~----~~~~~~~~l~s~~~dg~i~iwd~~~~ 82 (271)
..++++.. .+.+..++...+... .+.. +....+....++++|+ +.. ++ ..+...++.|.-|....+
T Consensus 43 G~llVter~~G~I~~v~~~~g~~~--~v~~~~~v~~~g~~GllGia~~Pdf~~~g~l-Yv--~yt~~~~~~v~R~~~~~~ 117 (347)
T 3das_A 43 GDLLVSSRDEATITRVDAKTGRKT--ELGEVPGVSPSGEGGLLGIALSPDYASDHMV-YA--YFTSASDNRIVRMLYDEK 117 (347)
T ss_dssp SCEEEEETTTCEEEEECTTTCCEE--EEEECTTCCCBTTBSEEEEEECTTHHHHCEE-EE--EEECSSSEEEEEEEBCTT
T ss_pred CcEEEEEecCCEEEEEECCCCcEe--eecccCceeecCCCCceeeEeccccccCCEE-EE--EEecCCCCEEEEEEeCCC
Confidence 45666665 788888765444222 1111 2233455678999985 333 11 112234555666665441
Q ss_pred --------ceeE---EEe---cCCcceEEEcCCCCEEEEEec-------------CCeEEEEeCCCCC--CCcc---eEE
Q 024185 83 --------SFQG---ILR---LRGRPTVAFDQQGLVFAVAME-------------AGAIKLFDSRSYD--KGPF---DTF 130 (271)
Q Consensus 83 --------~~~~---~~~---~~~~~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~~--~~~~---~~~ 130 (271)
.... .+. .|....+.|.|||.+.++.+. .|.|.-.+....- -.|+ ..+
T Consensus 118 ~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~ 197 (347)
T 3das_A 118 KPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVY 197 (347)
T ss_dssp SCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEE
T ss_pred CcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEE
Confidence 1111 122 244455999999986666432 3555555554320 0001 122
Q ss_pred EecCCccceEEEEEcCCCcEEEEEe-cCCeEEEEECCCCeE------------------EEEeecCCCCCceeeEEECCC
Q 024185 131 LVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEK------------------RCGFSLEPSPNTNTEATFTPD 191 (271)
Q Consensus 131 ~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~------------------~~~~~~~~~~~~v~~~~~~~~ 191 (271)
. .+|. ....++|+|+|.+.++=. .++.=.|--+..+.. +..+..+ ......++|. +
T Consensus 198 a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~--~~ap~G~~~~-~ 272 (347)
T 3das_A 198 S-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD--EASPSGIAYA-E 272 (347)
T ss_dssp E-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT--TCCEEEEEEE-T
T ss_pred e-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC--CCCCcceEEE-c
Confidence 2 2453 355789999877544432 232222222222211 1111100 0123445554 3
Q ss_pred CCEEEEecCCCcEEEEEcCCcee----EEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 192 GQYVVSGSGDGTLHAWNINTRNE----VACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 192 ~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
|..+...-..+.|....+..... ...+.+..+.+..++..|||.++++.+
T Consensus 273 g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 273 GSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 55555555556677667654432 223444456789999999998877765
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=91.73 E-value=7.2 Score=35.47 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=33.9
Q ss_pred ceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeec
Q 024185 138 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL 176 (271)
Q Consensus 138 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 176 (271)
.+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 467778888889999999999999999999999887543
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=88.10 E-value=8.8 Score=30.68 Aligned_cols=169 Identities=10% Similarity=0.084 Sum_probs=96.8
Q ss_pred ceEEEEEecCc--ceeEEEecCC--------cceEEEc---CC----CCEEEEEe-cCCeEEEEeCCCCCCC--------
Q 024185 72 LEYGIFVLMLA--SFQGILRLRG--------RPTVAFD---QQ----GLVFAVAM-EAGAIKLFDSRSYDKG-------- 125 (271)
Q Consensus 72 g~i~iwd~~~~--~~~~~~~~~~--------~~~~~~~---~~----~~~l~~~~-~d~~i~i~d~~~~~~~-------- 125 (271)
-+|.+||+.++ +.++.+.... ...+.+. |+ +.+.+.+. ..+.|.++|+.+++..
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 36889999999 8888886531 2225555 32 34555553 3568999999886630
Q ss_pred --cceEEEecCC----ccceEEEEEcCC----CcEEEEEecCCeEEEEEC-----CCC---eEEEEeecCCCCCceeeEE
Q 024185 126 --PFDTFLVGGD----TAEVCDIKFSND----GKSMLLTTTNNNIYVLDA-----YGG---EKRCGFSLEPSPNTNTEAT 187 (271)
Q Consensus 126 --~~~~~~~~~~----~~~v~~~~~s~~----~~~l~~~~~d~~i~~~d~-----~~~---~~~~~~~~~~~~~~v~~~~ 187 (271)
....+...+. ...+..++.+|+ ++.|+.....+ -++|.+ ++. ..++.+........-..++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA 281 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence 0011111221 146888999997 77777765543 233332 222 1122222111112244467
Q ss_pred EC-CCCCEEEEecCCCcEEEEEcCC-c---eeEEEe--cCCcceeEEEEEecCCcEEEEeC
Q 024185 188 FT-PDGQYVVSGSGDGTLHAWNINT-R---NEVACW--NGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 188 ~~-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
++ .+|..+++--..+.|..|+..+ . +....+ ...-..+..+.+.++|.+.+.++
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 75 6787777777788999999875 1 122222 11223567888888887666665
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=87.73 E-value=16 Score=33.26 Aligned_cols=38 Identities=24% Similarity=0.116 Sum_probs=33.0
Q ss_pred CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEe
Q 024185 181 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 218 (271)
Q Consensus 181 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 218 (271)
..+.++...++..++++-+.|+++++|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 34667777888899999999999999999999998865
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=87.61 E-value=7.7 Score=29.43 Aligned_cols=155 Identities=12% Similarity=0.068 Sum_probs=89.9
Q ss_pred EEEEEeeecceeEEeeecceeeEEEEeecc--ceeeEEEEEcccccceEEeeEEec-CCchhhhhhhhhhccCceEEEEE
Q 024185 2 VLIVFALPITQALLFARQNIILILLESLCG--IYQCMIIEFFATSKGIRRGLFLSA-CLQLMIALCLVLLTTALEYGIFV 78 (271)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~~~~l~s~~~dg~i~iwd 78 (271)
++.++....++.+++.++.|.++.+....- ..... + +.. ...+..+.... +... ++..+.+|.++-..
T Consensus 26 ~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l--l~~-~e~i~~v~~~~~~~~~-----~v~~T~~G~iKr~~ 96 (276)
T 3no0_A 26 VVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L--KSR-EEKIVGAFIREKFGNR-----LLLATKKGYVKKIP 96 (276)
T ss_dssp EEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C--SST-TCCEEEEEEGGGSCSE-----EEEEETTSEEEEEE
T ss_pred EEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c--CCC-CCEEEEEECCcCCCCE-----EEEEeCCCEEEEEE
Confidence 455677778889999999999998775431 00011 1 333 33444443321 3444 66789999999988
Q ss_pred ecCcc------eeEEEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCC-----CcceEEEecCCccceEEEEEcC
Q 024185 79 LMLAS------FQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK-----GPFDTFLVGGDTAEVCDIKFSN 146 (271)
Q Consensus 79 ~~~~~------~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~ 146 (271)
+..-. ....+... .+-.+........++..+.+|.++.++...-.. .-.....+.. ...|..+...+
T Consensus 97 l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~ 175 (276)
T 3no0_A 97 LAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWN 175 (276)
T ss_dssp GGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEES
T ss_pred HHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeC
Confidence 75432 11112221 222233444556788888899988887532110 1111223332 24566655555
Q ss_pred CCcEEEEEecCCeEEEEECC
Q 024185 147 DGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 147 ~~~~l~~~~~d~~i~~~d~~ 166 (271)
++..++..+..|.++...+.
T Consensus 176 ~~~~ll~~T~~G~~kr~~~~ 195 (276)
T 3no0_A 176 GEPYLLVITAKGRVKKISHE 195 (276)
T ss_dssp SCSEEEEEETTSCEEEEEGG
T ss_pred CCCEEEEEeCCCcEEEeEHH
Confidence 66788888999998888764
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=84.92 E-value=5 Score=34.24 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=41.3
Q ss_pred eeeEEECCCCCEEEEecCC------------CcEEEEEcCCceeEEEecCC-cceeEEEEEecCCcEEEEe
Q 024185 183 NTEATFTPDGQYVVSGSGD------------GTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAA 240 (271)
Q Consensus 183 v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~ 240 (271)
.-.++|+|.|++++.-..+ ..+.+.+..+++...-+.++ ...++.++|+||++.|...
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3558999999966654322 24666677777776655544 4679999999999987766
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.54 E-value=7.2 Score=36.27 Aligned_cols=37 Identities=22% Similarity=0.085 Sum_probs=31.6
Q ss_pred ceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEe
Q 024185 182 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 218 (271)
Q Consensus 182 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 218 (271)
.+.+++..++..++++-+.|+++++|++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3455666788899999999999999999999998875
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=83.45 E-value=8.2 Score=32.73 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=42.5
Q ss_pred ceeeEEECCCCCEEEEecC------------CCcEEEEEcCCceeEEEecCC-cceeEEEEEecCCcEEEEeC
Q 024185 182 TNTEATFTPDGQYVVSGSG------------DGTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 182 ~v~~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~ 241 (271)
....+.|+++|.+.+.... ...+..++..+++....+.+. ...++.++|+||++.|..+-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3556899999987773321 125777777778776655543 35689999999999887763
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=83.14 E-value=23 Score=31.01 Aligned_cols=196 Identities=8% Similarity=-0.002 Sum_probs=103.5
Q ss_pred eEEeeE-EecCCchhhhhhhhh-hccCceEEEEEecCcceeE-EEe-cCCc--------ceEEEcCCCCEEEEEe-----
Q 024185 47 IRRGLF-LSACLQLMIALCLVL-LTTALEYGIFVLMLASFQG-ILR-LRGR--------PTVAFDQQGLVFAVAM----- 109 (271)
Q Consensus 47 ~v~~~~-~s~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~-~~~-~~~~--------~~~~~~~~~~~l~~~~----- 109 (271)
....+. ++|+++++++. +-- |+.-..++++|+++++.+. .+. .... ..++|..+.. ++.+.
T Consensus 130 ~~~g~~~~~~~~~~~~~~-ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~-~~~~~~~~~~ 207 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLIS-MSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDT-IIFNLVLHKN 207 (711)
T ss_dssp EEEEEEECSSSTTEEEEE-EEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTE-EEECCCCSTT
T ss_pred EEeceeecCCCCCEEEEE-eCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCE-EEEEeCCCCC
Confidence 344555 78888875442 222 3344579999999988653 222 1111 3358874344 44432
Q ss_pred ------cCCeEEEEeCCCCCCCcceEEEecCCccc-eEEEEEcCCCcE-----EEEEec---CCeEEEEECCC--CeEEE
Q 024185 110 ------EAGAIKLFDSRSYDKGPFDTFLVGGDTAE-VCDIKFSNDGKS-----MLLTTT---NNNIYVLDAYG--GEKRC 172 (271)
Q Consensus 110 ------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~-----l~~~~~---d~~i~~~d~~~--~~~~~ 172 (271)
....|+.|.+-+....- ...+.+.... -.....++++++ +++.+. ...+.+.|... ++ ..
T Consensus 208 ~~~~~~~~~~v~~~~~Gt~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~ 284 (711)
T 4hvt_A 208 EITSSLYPNSLYIWKRGESIEKA--KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQ 284 (711)
T ss_dssp CBCTTSSBCEEEEEETTSCGGGC--EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EE
T ss_pred CcCcCCCCCEEEEEECCCChHHC--eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ce
Confidence 12468888887654311 2223332222 234555667663 444332 24566767553 43 23
Q ss_pred EeecCCCCCceeeEEECCCCCEEEEec----------CCCcEEEEEcCCce-------eEEE-e-cCCcceeEEEEEecC
Q 024185 173 GFSLEPSPNTNTEATFTPDGQYVVSGS----------GDGTLHAWNINTRN-------EVAC-W-NGNIGVVACLKWAPR 233 (271)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~-------~~~~-~-~~~~~~v~~~~~s~~ 233 (271)
.+...... .+..++++.+++... ..+.|...|+.++. .... + ......+..+.|..+
T Consensus 285 ~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (711)
T 4hvt_A 285 KINMPSDA----TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD 360 (711)
T ss_dssp ECCSCTTC----EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS
T ss_pred EeecCCcc----eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC
Confidence 33222221 123445666555331 35789999987642 2222 3 233456788888876
Q ss_pred CcEEEEeC----CeEEEEcCCCC
Q 024185 234 RAMFVAAS----SVLSFWIPNPS 252 (271)
Q Consensus 234 ~~~l~~~~----~~v~iw~~~~~ 252 (271)
.++++.. ..+.++++.++
T Consensus 361 -~l~~~~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 361 -RVFLATYDNVVAKVVTFTLENE 382 (711)
T ss_dssp -CEEEEEEETTEEEEEEECEETT
T ss_pred -EEEEEEEECCEEEEEEEECCCC
Confidence 4444443 45888888665
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.44 E-value=4.4 Score=37.65 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=32.5
Q ss_pred ceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeec
Q 024185 138 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL 176 (271)
Q Consensus 138 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 176 (271)
.+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 345566777888999999999999999999999887553
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=82.16 E-value=9 Score=32.69 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=41.6
Q ss_pred eEEEEEcCCCcEEEEEecC------------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEe
Q 024185 139 VCDIKFSNDGKSMLLTTTN------------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 198 (271)
Q Consensus 139 v~~~~~s~~~~~l~~~~~d------------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 198 (271)
.-.|+|+|.|.+++.-..+ ..+.+.+..+++..+.+.... ..-++.++|+||++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~-gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI-GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT-TCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC-CccCcCeeECCCCCEEEEE
Confidence 4678999999866554322 346667777787766665543 3568999999999988765
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=81.51 E-value=15 Score=27.79 Aligned_cols=168 Identities=8% Similarity=-0.017 Sum_probs=79.5
Q ss_pred CceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc
Q 024185 71 ALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK 149 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 149 (271)
||.++.|-......+.. +.. ......++......+.-. +|.|+.|=......-.... .....|..++...+..
T Consensus 80 ~G~v~~wG~n~~Gqlg~-P~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~----~~~~~i~~i~~G~~~~ 153 (282)
T 3qhy_B 80 DGEVIAWGGNEDGQTTV-PAEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA----EAQSGVTALDGGVYTA 153 (282)
T ss_dssp TTEEEEEECCTTSTTCC-CGGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG----GGGSSEEEEEECSSEE
T ss_pred CCEEEEeeCCCCCCCCC-CcccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc----cCCCCeEEEEcccCEE
Confidence 88888886543211110 000 112333333333444445 8889998765432211111 1234577776554433
Q ss_pred EEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEE
Q 024185 150 SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLK 229 (271)
Q Consensus 150 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 229 (271)
++ -. ||.++.|-......+.. .... ...+..++-..+. .++. .||.++.|-......+-.-......|..++
T Consensus 154 -~~-l~-~G~v~~wG~n~~gqlg~-p~~~-~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~ 225 (282)
T 3qhy_B 154 -LA-VK-NGGVIAWGDNYFGQTTV-PAEA-QSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIA 225 (282)
T ss_dssp -EE-EE-TTEEEEEECCTTSTTSC-CGGG-GSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEE
T ss_pred -EE-EE-CCEEEEecCCCCCCCCC-ceec-CCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEE
Confidence 22 23 78999997543211110 0000 1225555544332 2233 588888886543211110001123466666
Q ss_pred EecCCcEEEEeCCeEEEEcCCCCC
Q 024185 230 WAPRRAMFVAASSVLSFWIPNPSS 253 (271)
Q Consensus 230 ~s~~~~~l~~~~~~v~iw~~~~~~ 253 (271)
-..+....++ +|.+..|=.....
T Consensus 226 ~G~~h~~al~-~g~v~~wG~n~~g 248 (282)
T 3qhy_B 226 SGEWYSLALK-NGKVIAWGSSRTA 248 (282)
T ss_dssp ECSSCEEEEE-TTEEEEESTTCCC
T ss_pred cCCCEEEEEE-CCEEEEecCCCCc
Confidence 5555556666 7888888665543
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=80.93 E-value=19 Score=28.56 Aligned_cols=108 Identities=9% Similarity=0.032 Sum_probs=52.9
Q ss_pred ceEEEEEcC-C-CcEEEEEecCCeEEEEECCCCeEEEEeec---C--------------CCCCceeeEEECCC-CCEEEE
Q 024185 138 EVCDIKFSN-D-GKSMLLTTTNNNIYVLDAYGGEKRCGFSL---E--------------PSPNTNTEATFTPD-GQYVVS 197 (271)
Q Consensus 138 ~v~~~~~s~-~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~--------------~~~~~v~~~~~~~~-~~~l~~ 197 (271)
.|.++++.| + ...+.++...+.|...+ ..++.-..+.. + .....+.++.++|. ...+..
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 577889987 2 45677766666666554 22322122211 0 11124678889883 344444
Q ss_pred ecCCCcEEEEEcCCceeEEEecC-----C--------cceeEEEEEecC-CcEEEEeC-CeEEEE
Q 024185 198 GSGDGTLHAWNINTRNEVACWNG-----N--------IGVVACLKWAPR-RAMFVAAS-SVLSFW 247 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~~~-----~--------~~~v~~~~~s~~-~~~l~~~~-~~v~iw 247 (271)
+..++.|...+ ..++.-..+.. + ...+.++.++|+ ...|..+. +.|...
T Consensus 195 g~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s 258 (394)
T 3b7f_A 195 GMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRM 258 (394)
T ss_dssp EEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEE
T ss_pred EECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEe
Confidence 54444343332 22332222211 0 124788999886 23444443 444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 271 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.001 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.002 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.001 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-07 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.004 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.003 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 3e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.002 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 2e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.003 | |
| d1k32a2 | 281 | b.68.7.1 (A:39-319) Tricorn protease N-terminal do | 0.004 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.1 bits (175), Expect = 3e-15
Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 6/152 (3%)
Query: 98 FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN 157
+F + KL+D R TF G +++ I F +G + + +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVRE--GMCRQTFT--GHESDINAICFFPNGNAFATGSDD 247
Query: 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC 217
+ D ++ +S + T +F+ G+ +++G D + W+ +
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307
Query: 218 WNGNIGVVACLKWAPRRAMFVAASS--VLSFW 247
G+ V+CL S L W
Sbjct: 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.8 bits (156), Expect = 1e-12
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 4/114 (3%)
Query: 95 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 154
+ F G FA + +LFD R+ + + + + FS G+ +L
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH--DNIICGITSVSFSKSGRLLLAG 288
Query: 155 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
+ N V DA ++ L N + T DG V +GS D L WN
Sbjct: 289 YDDFNCNVWDALKADRAG--VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.8 bits (99), Expect = 2e-05
Identities = 16/67 (23%), Positives = 23/67 (34%)
Query: 188 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 247
+ D + +VS S DG L W+ T N+V V +AP
Sbjct: 63 WGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 248 IPNPSSN 254
I N +
Sbjct: 123 IYNLKTR 129
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.4 bits (160), Expect = 3e-13
Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 21/171 (12%)
Query: 98 FDQQGLVFAVAMEAGAIKLFDSRS---YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 154
G A A++++DS + ++ + G V + F+ DG+S++
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272
Query: 155 TTNNNIYVLDAYGGEKR----------CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL 204
+ + ++ + + + C + + T + +Y++SGS D +
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332
Query: 205 HAWNINTRNEVACWNGNIGVVACLKWA------PRRAMFVAASS--VLSFW 247
W+ + N + G+ V + A P +F S W
Sbjct: 333 LFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.0 bits (128), Expect = 5e-09
Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 12/127 (9%)
Query: 95 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG--------DTAEVCDIKFSN 146
+V F + G ++KL++ ++ + G V + +
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318
Query: 147 DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT----NTEATFTPDGQYVVSGSGDG 202
+ + +L + + + D G + ++ P+ +GSGD
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC 378
Query: 203 TLHAWNI 209
W
Sbjct: 379 KARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.9 bits (86), Expect = 0.001
Identities = 10/65 (15%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSF 246
F+ DG+Y+ +G + T + ++ + VA + + + + + + S
Sbjct: 69 KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 127
Query: 247 -WIPN 250
+ P+
Sbjct: 128 CFSPD 132
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.7 bits (83), Expect = 0.002
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 17/132 (12%)
Query: 136 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT-------- 187
T+ VC +KFSNDG+ L T N V G S + + N + E
Sbjct: 62 TSVVCCVKFSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120
Query: 188 --------FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA 239
F+PDG+++ +G+ D + W+I R V G+ + L + P V+
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180
Query: 240 ASSVLSFWIPNP 251
S + I +
Sbjct: 181 GSGDRTVRIWDL 192
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.9 bits (159), Expect = 4e-13
Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 20/169 (11%)
Query: 97 AFDQQGLVFAVAMEAGAIKLFDSRSY----------------DKGPFDTFLVGGDTAEVC 140
+Q G + A ++++ + P ++ +
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 209
Query: 141 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 200
K G +L + + I + D G C +L N F G++++S +
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTG--MCLMTLVGHDNWVRGVLFHSGGKFILSCAD 267
Query: 201 DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS--VLSFW 247
D TL W+ + + N + V L + V S + W
Sbjct: 268 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.6 bits (114), Expect = 2e-07
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 188 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMF 237
F P +VS S D T+ W+ T + G+ V + + +
Sbjct: 25 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.3 bits (95), Expect = 6e-05
Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 6/148 (4%)
Query: 95 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 154
V F V A E IK++D + D + G T V DI F + GK +
Sbjct: 22 RVIFHPVFSVMVSASEDATIKVWDYETGDF----ERTLKGHTDSVQDISFDHSGKLL--A 75
Query: 155 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 214
+ + ++ + C ++ + + + P+G ++VS S D T+ W + T
Sbjct: 76 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 135
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAASS 242
V + G+ V ++ + + S+
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSN 163
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.5 bits (93), Expect = 1e-04
Identities = 20/97 (20%), Positives = 32/97 (32%)
Query: 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW 230
C + DG + S S D T+ W + T+ A + VV C+ W
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 193
Query: 231 APRRAMFVAASSVLSFWIPNPSSNSTDESTDPQATVK 267
AP + + + S + S T+K
Sbjct: 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.8 bits (135), Expect = 6e-10
Identities = 11/81 (13%), Positives = 28/81 (34%)
Query: 139 VCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 198
+ ++ D + + N+ +++ + G + L+ T + PD +V+
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 199 SGDGTLHAWNINTRNEVACWN 219
D + W + R
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLV 90
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.4 bits (108), Expect = 1e-06
Identities = 14/142 (9%), Positives = 38/142 (26%), Gaps = 2/142 (1%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
A+++ A+ + +++ +V + ++ D ++
Sbjct: 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL--KEHNGQVTGVDWAPDSNRIVTCG 70
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 215
T+ N YV G + + + P+ + GSG + N+
Sbjct: 71 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW 130
Query: 216 ACWNGNIGVVACLKWAPRRAMF 237
+ +
Sbjct: 131 WVCKHIKKPIRSTVLSLDWHPN 152
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.2 bits (123), Expect = 2e-08
Identities = 10/65 (15%), Positives = 25/65 (38%)
Query: 188 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 247
+ YV++G+ D + ++ + + +G+ G V LK+A + ++
Sbjct: 19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 78
Query: 248 IPNPS 252
Sbjct: 79 WDIKK 83
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 5e-05
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 186 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAASS 242
TF +VSGS + + +N+ + V + + + + + + A
Sbjct: 288 TTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEK 343
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (121), Expect = 4e-08
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 140 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 199
+KF+ GK + T +N + G ++ + D +Y+V+GS
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS---IFQSKESSSVLSCDISVDDKYIVTGS 325
Query: 200 GDGTLHAWNI 209
GD + +
Sbjct: 326 GDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 6e-07
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS--VL 244
F G++ VS D L+AW + + V + V S
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISVDDKYIVTGSGDKKA 330
Query: 245 SFW 247
+ +
Sbjct: 331 TVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 8e-06
Identities = 26/158 (16%), Positives = 44/158 (27%), Gaps = 8/158 (5%)
Query: 83 SFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI 142
FQG + + + G + V A+ + + +T VC +
Sbjct: 2 YFQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHAR-QINTL---NHGEVVCAV 57
Query: 143 KFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT---FTPDGQYVVSGS 199
SN + + T + V D + S N + PDG ++ G
Sbjct: 58 TISNPTR-HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116
Query: 200 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMF 237
TL W++ AC A
Sbjct: 117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK 154
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 7e-05
Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 6/71 (8%)
Query: 186 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC-----WNGNIGVVACLKWAPRRAMFVAA 240
T + ++V +G G + W+I+ + + K P +
Sbjct: 57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115
Query: 241 SSVLSFWIPNP 251
+ I +
Sbjct: 116 GEASTLSIWDL 126
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 1e-07
Identities = 13/50 (26%), Positives = 19/50 (38%)
Query: 188 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMF 237
G +VSGS D TL W+ T + G+ G V + +
Sbjct: 23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS 72
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 2e-05
Identities = 24/174 (13%), Positives = 65/174 (37%), Gaps = 14/174 (8%)
Query: 76 IFVLMLASFQGILRLRGRPTVAFDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG 133
+ V + + L+G + Q G+ +I+++D + + T
Sbjct: 159 VKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT---- 214
Query: 134 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193
G + ++ ++ ++ ++ + + D G+ P+ + + +
Sbjct: 215 GHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQ-GPNKHQSAVTCLQFNKN 271
Query: 194 YVVSGSGDGTLHAWNINTRNEVACWN-----GNIGVVACLKWAPRRAMFVAASS 242
+V++ S DGT+ W++ T + G+ GVV ++ + + + S
Sbjct: 272 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR 325
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 5e-05
Identities = 12/124 (9%), Positives = 35/124 (28%), Gaps = 10/124 (8%)
Query: 94 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL 153
T + + + +K++D ++ + + + ++
Sbjct: 219 LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG---PNKHQSAVTCLQFNKNFVIT 275
Query: 154 TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT---FTPDGQYVVSGSGDGT----LHA 206
++ + + + D GE S + + GS +GT L
Sbjct: 276 SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV 335
Query: 207 WNIN 210
+ +
Sbjct: 336 LDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 6e-05
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 179 SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFV 238
+TN + DG +VVSGS D ++ W++ T N + G+ + + ++ +
Sbjct: 174 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSG 233
Query: 239 AASSVLSFW 247
A S + W
Sbjct: 234 NADSTVKIW 242
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 1e-07
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 188 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW 230
D Q +VSG D T+ W+ NT G+ G V CL++
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 0.001
Identities = 19/113 (16%), Positives = 32/113 (28%), Gaps = 11/113 (9%)
Query: 101 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI 160
+ + I+L+D L + E D K ++ + I
Sbjct: 187 RDRLVVSGSSDNTIRLWDIECG------ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKI 240
Query: 161 YVLDAYGGEKRCGFSLEPSPNTNTEAT-----FTPDGQYVVSGSGDGTLHAWN 208
V D + T E + D +VS S D T+ W+
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 49.6 bits (117), Expect = 2e-07
Identities = 27/163 (16%), Positives = 49/163 (30%), Gaps = 10/163 (6%)
Query: 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSML 152
+ D L +AG I L D S K G V + S G+ +L
Sbjct: 23 KQLNDLDLPNLFSVTLRDAGQIALVDGDS--KKIVKVIDTGY---AVHISRMSASGRYLL 77
Query: 153 LTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT---FTPDGQYVVSGSGDGTLHAWNI 209
+ + I ++D + E ++ + + + +Y ++G+ A
Sbjct: 78 VIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD 137
Query: 210 NTRNEVACW--NGNIGVVACLKWAPRRAMFVAASSVLSFWIPN 250
E + V R + AS +I N
Sbjct: 138 GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 180
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 49.4 bits (117), Expect = 2e-07
Identities = 22/167 (13%), Positives = 48/167 (28%), Gaps = 10/167 (5%)
Query: 89 RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148
+ +D + L +AG I L D +Y+ G V + S G
Sbjct: 19 DRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYE--IKTVLDTGYA---VHISRLSASG 73
Query: 149 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA---TFTPDGQYV-VSGSGDGTL 204
+ + + + + ++D + E ++ + + +Y
Sbjct: 74 RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQY 133
Query: 205 HAWNINTRNEVACWNGNIGVVACLKWAP-RRAMFVAASSVLSFWIPN 250
+ T + ++ P R + AS +I N
Sbjct: 134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 180
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 2e-07
Identities = 7/63 (11%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 188 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG---VVACLKWAPRRAMFVAASSVL 244
P ++ S DG+L + + + + ++ + C + + + +V
Sbjct: 19 IIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ 78
Query: 245 SFW 247
Sbjct: 79 GEI 81
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 2e-05
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 3/81 (3%)
Query: 133 GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG 192
V I+FS K + ++ I + +K F N ++
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF---AKFNEDSVVKIACSD 304
Query: 193 QYVVSGSGDGTLHAWNINTRN 213
+ + D T +
Sbjct: 305 NILCLATSDDTFKTNAAIDQT 325
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 3e-05
Identities = 16/144 (11%), Positives = 39/144 (27%), Gaps = 14/144 (9%)
Query: 112 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK- 170
++ F + G + + ++ + + V
Sbjct: 170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229
Query: 171 ------------RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 218
R F+P +++ + DG + WN+ TR ++ +
Sbjct: 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
Query: 219 NGNIGVVACLKWAPRRAMFVAASS 242
+ +K A + A+S
Sbjct: 290 AK-FNEDSVVKIACSDNILCLATS 312
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 48.3 bits (113), Expect = 3e-07
Identities = 7/88 (7%), Positives = 20/88 (22%), Gaps = 6/88 (6%)
Query: 134 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193
+ D + + N T+ + D +
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK------VTEVKNNLTDLRLSADRK 327
Query: 194 YVVSGSGDGTLHAWNINTRNEVACWNGN 221
V+ DG ++ + + + +
Sbjct: 328 TVMVRKDDGKIYTFPLEKPEDERTVETD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 45.6 bits (106), Expect = 2e-06
Identities = 13/87 (14%), Positives = 21/87 (24%), Gaps = 8/87 (9%)
Query: 144 FS-NDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 202
FS DG ++ + ++ D G P P D +
Sbjct: 10 FSPLDGD-LIAFVSRGQAFIQDVSGTYVL----KVPEPLRIRYVRRGGDTKVAFIHGTRE 64
Query: 203 --TLHAWNINTRNEVACWNGNIGVVAC 227
L ++ T V A
Sbjct: 65 GDFLGIYDYRTGKAEKFEENLGNVFAM 91
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.2 bits (97), Expect = 4e-05
Identities = 19/153 (12%), Positives = 34/153 (22%), Gaps = 12/153 (7%)
Query: 98 FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT---FLVGGDTAEVCDIKFSNDGK----- 149
FD D + F++ K
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245
Query: 150 SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 209
L ++ G+ R LE S + Y G L +++
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305
Query: 210 NTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 242
TR +V N+ + + R +
Sbjct: 306 KTR-KVTEVKNNLTDLR---LSADRKTVMVRKD 334
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.4 bits (113), Expect = 3e-07
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 172 CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV-VACLKW 230
+ T++PDG + S S D T+ WN+ T + L
Sbjct: 230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 289
Query: 231 APRRAMFVAASS--VLSFW 247
+ V+ S+ ++F
Sbjct: 290 IWTKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.7 bits (101), Expect = 1e-05
Identities = 6/55 (10%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
TP G + +G +++ + + + + + K +P +
Sbjct: 24 GNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.6 bits (98), Expect = 2e-05
Identities = 14/103 (13%), Positives = 25/103 (24%), Gaps = 5/103 (4%)
Query: 137 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 196
+ + G + ++Y + ++ T A +P G Y
Sbjct: 18 GTAVVLGNTPAGD-KIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTV--AKTSPSGYYCA 74
Query: 197 SGSGDGTL--HAWNINTRNEVACWNGNIGVVACLKWAPRRAMF 237
SG G + T G V + W
Sbjct: 75 SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 117
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.9 bits (91), Expect = 2e-04
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 140 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 199
+ +S DG + + + I + + + + + + + Q +VS S
Sbjct: 242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV-GTRIEDQQLGIIWTKQALVSIS 300
Query: 200 GDGTLHAWNI 209
+G ++ N
Sbjct: 301 ANGFINFVNP 310
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.1 bits (112), Expect = 4e-07
Identities = 11/69 (15%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAASSVLS 245
+ + DG+ + S +G +++W+I+T + + + ++ +K + +F +
Sbjct: 19 SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHL 78
Query: 246 FWIPNPSSN 254
+P S
Sbjct: 79 KVVPAGGSG 87
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.8 bits (101), Expect = 8e-06
Identities = 7/54 (12%), Positives = 18/54 (33%)
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 209
+N++ V + ++ + + +VS D + WN+
Sbjct: 244 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 35.7 bits (80), Expect = 0.004
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 188 FTPDGQYVVSGSGDGTLHAWNINTRNEVACW---NGNIGVVACLKWAPRRAMFVAASS-- 242
++PD + +GS D ++ WN+N ++ + V + W V+A
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDS 290
Query: 243 VLSFW 247
+ FW
Sbjct: 291 NIKFW 295
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.1 bits (110), Expect = 9e-07
Identities = 7/67 (10%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV-VSGSGDGTLHAWNINTRNEVA 216
+ + V+D ++ + T P G+ + + +L ++ T +
Sbjct: 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG 70
Query: 217 CWNGNIG 223
+ +
Sbjct: 71 RIDLSTP 77
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.6 bits (101), Expect = 1e-05
Identities = 15/121 (12%), Positives = 25/121 (20%), Gaps = 8/121 (6%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
+ + D + G V +
Sbjct: 203 YTARKDIDPADPTAYRTGLLTMDLET---GEMAMREVRIMDVFYFSTAVNPAKT--RAFG 257
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 215
N + D L S + + DG V G G L A++ T +
Sbjct: 258 AYNVLESFDLEKNASIKRVPLPHSYYS---VNVSTDGSTVWLGGALGDLAAYDAETLEKK 314
Query: 216 A 216
Sbjct: 315 G 315
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 45.5 bits (106), Expect = 3e-06
Identities = 18/121 (14%), Positives = 31/121 (25%), Gaps = 7/121 (5%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
F A A D ++ G T T S + +
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKT---GKTHTQEFADLTELYFTGLRSPKDPN-QIYG 269
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 215
N + D + +L+ + F G + G L +N +T +V
Sbjct: 270 VLNRLAKYDLKQRKLIKAANLDHTYYC---VAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326
Query: 216 A 216
Sbjct: 327 K 327
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.3 bits (103), Expect = 8e-06
Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 8/135 (5%)
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV-VSGSGDG 202
+ M++T NN++V+D + P A PD + V + G
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMAPDNRTAYVLNNHYG 62
Query: 203 TLHAWNINTRNEVAC------WNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNST 256
++ +++T + +P A + +
Sbjct: 63 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122
Query: 257 DESTDPQATVKSDQV 271
A +
Sbjct: 123 RLEVFSTADGLEAKP 137
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 38.2 bits (87), Expect = 7e-04
Identities = 12/130 (9%), Positives = 33/130 (25%), Gaps = 9/130 (6%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
A V + + D S + + ++ + D ++ +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDT--VYKSCVMPDKF-GPGTAMMAPDNRTAYVLN 58
Query: 156 TNNN-IYVLDAYGGEKR----CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210
+ IY +D + + +PDG+ V + +
Sbjct: 59 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118
Query: 211 -TRNEVACWN 219
+ ++
Sbjct: 119 VKPPRLEVFS 128
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.9 bits (99), Expect = 2e-05
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 5/88 (5%)
Query: 131 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 190
V A + T + + VLDA GE+ F + +
Sbjct: 253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEI---DSINVSQ 309
Query: 191 DGQY--VVSGSGDGTLHAWNINTRNEVA 216
D + +GD TL+ + + E+
Sbjct: 310 DEKPLLYALSTGDKTLYIHDAESGEELR 337
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 36.3 bits (82), Expect = 0.003
Identities = 16/139 (11%), Positives = 34/139 (24%), Gaps = 19/139 (13%)
Query: 144 FSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV--- 195
+ D + + + +V+D G PN DG ++
Sbjct: 9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN----PVVADDGSFIAHA 64
Query: 196 -------VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWI 248
G + ++ T A + P L F+
Sbjct: 65 STVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 124
Query: 249 PNPSSNSTDESTDPQATVK 267
+P+ + +A +
Sbjct: 125 FSPAPAVGVVDLEGKAFKR 143
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.6 bits (98), Expect = 2e-05
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 188 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA---PRRAMFVAASS-- 242
D Q + D T+ W++ T V W + + + ++ S
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318
Query: 243 VLSFW 247
L+F+
Sbjct: 319 TLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 4e-05
Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 12/108 (11%)
Query: 137 AEVCDIKFSNDGKSMLLTTTNNN-IYVLDAYGGEKRCGFSLE-PSPNTNTEATFTP--DG 192
+ + ++ + + LD + + T F+P
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 193 QYVVSGSGDGTLHAWNINTRNEV--------ACWNGNIGVVACLKWAP 232
QY+ SG G + W E + + G ++ + W
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF 125
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 5e-05
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 140 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVSG 198
D + + I V D + ++L+ N + G ++S
Sbjct: 255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314
Query: 199 SGDGTLHAWNI 209
S DGTL+ + +
Sbjct: 315 SLDGTLNFYEL 325
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 42.2 bits (97), Expect = 3e-05
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 157 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV-VSGSGDGTLHAWNINTRNEV 215
++NI V+D + + +P A +PDG V V+ + + + T N +
Sbjct: 11 SDNISVIDVTSNKVTATIPVGSNP---MGAVISPDGTKVYVANAHSNDVSIIDTATNNVI 67
Query: 216 ACWNGNIGVVACLKWAPRRAMF 237
A + ++
Sbjct: 68 ATVPAGSSPQGVAVSPDGKQVY 89
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 40.6 bits (93), Expect = 1e-04
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 187 TFTPDGQYV-VSGSGDGTLHAWNINTRNEVA 216
TPDG+ V V+ S T+ + T A
Sbjct: 250 AVTPDGKKVYVALSFCNTVSVIDTATNTITA 280
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 2e-04
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 180 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAPRRAMFV 238
P + V +GS D + +++ + + N + V L W V
Sbjct: 215 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLV 273
Query: 239 AASS--VLSFW 247
++ + + W
Sbjct: 274 SSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.5 bits (82), Expect = 0.002
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Query: 140 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 199
+ + + + + NI++ K +L + + +VS
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMK-IIKALNAHKDGVNNLLWETPS-TLVSSG 276
Query: 200 GDGTLHAWNI 209
D + WN+
Sbjct: 277 ADACIKRWNV 286
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 2e-04
Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 157 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV-VSGSGDGTLHAWNINTRNEV 215
+ I+V + + P +PD +Y+ V + + A+ I +
Sbjct: 13 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA 72
Query: 216 ACWNGNIGVVA 226
+ +
Sbjct: 73 LTFAAESALPG 83
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.5 bits (90), Expect = 3e-04
Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 5/119 (4%)
Query: 157 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 216
I L + + +F G+ + S DG L W++ T+ +
Sbjct: 266 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT 325
Query: 217 CWNGNIGVVAC----LKWAPRRAMFVAASSV-LSFWIPNPSSNSTDESTDPQATVKSDQ 270
N + + L + F S + + V D+
Sbjct: 326 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR 384
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.4 bits (88), Expect = 6e-04
Identities = 9/75 (12%), Positives = 19/75 (25%), Gaps = 5/75 (6%)
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY--VVSGSGD 201
S N + A G+ S + DG + +G
Sbjct: 280 ILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDA---IIAAQDGASDNYANSAGT 336
Query: 202 GTLHAWNINTRNEVA 216
L ++ + + +
Sbjct: 337 EVLDIYDAASDQDQS 351
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 36.1 bits (82), Expect = 0.003
Identities = 10/157 (6%), Positives = 29/157 (18%), Gaps = 10/157 (6%)
Query: 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM 151
+ A + A + G + + + G
Sbjct: 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA--------AQANYPGM-- 224
Query: 152 LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211
L+ ++I D +++ + + F G +V+ +
Sbjct: 225 LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284
Query: 212 RNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWI 248
+ +
Sbjct: 285 HSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIA 321
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 35.5 bits (80), Expect = 0.004
Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 4/117 (3%)
Query: 155 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINTRN 213
++++ D G R + + A F PDG+ + +L+ ++ N
Sbjct: 18 VCCDDLWEHDLKSGSTR---KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYN 74
Query: 214 EVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDESTDPQATVKSDQ 270
I + R VA I + + S V++D
Sbjct: 75 GENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDG 131
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 271 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.92 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.91 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.91 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.88 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.86 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.83 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.83 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.82 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.81 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.81 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.8 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.77 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.74 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.72 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.62 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.62 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.58 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.51 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.46 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.45 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.4 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.33 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.3 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.3 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.25 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.21 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.19 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.17 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.12 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.11 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.09 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.09 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.03 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.03 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.99 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.99 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.94 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.87 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.85 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.79 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.41 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.38 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.26 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.08 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.9 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.79 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.72 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.72 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.62 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.54 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.47 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.44 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.42 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.36 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.33 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.3 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.25 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 97.08 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.93 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 96.89 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.87 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.64 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.6 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.53 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.45 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.25 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 95.61 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.3 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.97 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.65 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 94.51 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.47 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 91.12 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 88.97 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.7e-38 Score=246.80 Aligned_cols=234 Identities=12% Similarity=0.135 Sum_probs=196.3
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee--E
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ--G 86 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~ 86 (271)
|..+.++++ .+..+..++.... ...+.|.+|.+.|.+++|+|+|++ |++|+.||+|++||+.+++.. .
T Consensus 27 ~~g~~l~~~-~~~~v~i~~~~~~----~~~~~~~~H~~~v~~~~~sp~g~~-----latg~~dg~i~iwd~~~~~~~~~~ 96 (311)
T d1nr0a1 27 PAGDKIQYC-NGTSVYTVPVGSL----TDTEIYTEHSHQTTVAKTSPSGYY-----CASGDVHGNVRIWDTTQTTHILKT 96 (311)
T ss_dssp TTSSEEEEE-ETTEEEEEETTCS----SCCEEECCCSSCEEEEEECTTSSE-----EEEEETTSEEEEEESSSTTCCEEE
T ss_pred CCCCEEEEE-eCCEEEEEECCCC----ceeEEEcCCCCCEEEEEEeCCCCe-----EeccccCceEeeeeeecccccccc
Confidence 444555555 3555666666554 333447899999999999999998 899999999999999887643 4
Q ss_pred EEecCC--cceEEEcCCCCEEEEEecC--CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcE-EEEEecCCeEE
Q 024185 87 ILRLRG--RPTVAFDQQGLVFAVAMEA--GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS-MLLTTTNNNIY 161 (271)
Q Consensus 87 ~~~~~~--~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~ 161 (271)
.+..|. +.+++|+|++++|++++.+ ..+++|+.++++. ...+.+|...|.+++|+|++++ +++|+.|+.|+
T Consensus 97 ~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~----~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~ 172 (311)
T d1nr0a1 97 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS----NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 172 (311)
T ss_dssp EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB----CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred ccccccCccccccccccccccccccccccccccccccccccc----cccccccccccccccccccceeeecccccccccc
Confidence 456554 6679999999999998754 5699999998775 5567789999999999999885 77899999999
Q ss_pred EEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec-------CCcceeEEEEEecCC
Q 024185 162 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-------GNIGVVACLKWAPRR 234 (271)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~ 234 (271)
+||+++++....+..|... |.++.|+|+++++++++.|+.+++||+.+++....+. +|...|++++|+|++
T Consensus 173 i~d~~~~~~~~~~~~~~~~--i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~ 250 (311)
T d1nr0a1 173 IFEGPPFKFKSTFGEHTKF--VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 250 (311)
T ss_dssp EEETTTBEEEEEECCCSSC--EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred ccccccccccccccccccc--ccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence 9999999999888887766 9999999999999999999999999999988877663 578899999999999
Q ss_pred cEEEEeC--CeEEEEcCCCCCCCcCC
Q 024185 235 AMFVAAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 235 ~~l~~~~--~~v~iw~~~~~~~~~~~ 258 (271)
++|++|+ +.|++||++++++..+.
T Consensus 251 ~~l~tgs~Dg~v~iwd~~t~~~~~~l 276 (311)
T d1nr0a1 251 TKIASASADKTIKIWNVATLKVEKTI 276 (311)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 9999997 88999999998876544
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.3e-36 Score=240.54 Aligned_cols=207 Identities=14% Similarity=0.175 Sum_probs=181.4
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeE
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAI 114 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i 114 (271)
..+.+++|.+.|.+++|+|++++ |++|+.||+|++||+.+++.+..+..|. +.+++|+|+++++++++.|+.+
T Consensus 47 ~~~tL~GH~~~I~~l~~s~~~~~-----l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i 121 (340)
T d1tbga_ 47 TRRTLRGHLAKIYAMHWGTDSRL-----LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSE-----EEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred eeEEECCCCCCEEEEEECCCCCE-----EEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeeccccee
Confidence 44668999999999999999998 8999999999999999999999998775 5669999999999999999999
Q ss_pred EEEeCCCCCCCcc-------------------------------------------------------------------
Q 024185 115 KLFDSRSYDKGPF------------------------------------------------------------------- 127 (271)
Q Consensus 115 ~i~d~~~~~~~~~------------------------------------------------------------------- 127 (271)
.+|+.........
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (340)
T d1tbga_ 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence 8888654221000
Q ss_pred ----------------eEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCC
Q 024185 128 ----------------DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 191 (271)
Q Consensus 128 ----------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 191 (271)
....+.+|...|.+++|+|++++|++++.|+.+++||++..+....+........+.+++|+|+
T Consensus 202 ~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 281 (340)
T d1tbga_ 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281 (340)
T ss_dssp EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSS
T ss_pred eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCC
Confidence 1123345668899999999999999999999999999999988887765555566999999999
Q ss_pred CCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEc
Q 024185 192 GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 248 (271)
Q Consensus 192 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~ 248 (271)
+++|++|+.||.|++||+.+++.+..+.+|.++|++++|+|++++|++|+ |.|++||
T Consensus 282 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999987 8899997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.1e-35 Score=237.62 Aligned_cols=234 Identities=12% Similarity=0.048 Sum_probs=192.0
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++++..++.+.+|+...+. ......+++|.+.|.+++|+|++++ |++++.|++|++||++++.....+
T Consensus 17 ~dg~~la~~~~~~~i~iw~~~~~~--~~~~~~l~gH~~~V~~l~fsp~~~~-----l~s~s~D~~i~vWd~~~~~~~~~~ 89 (371)
T d1k8kc_ 17 KDRTQIAICPNNHEVHIYEKSGNK--WVQVHELKEHNGQVTGVDWAPDSNR-----IVTCGTDRNAYVWTLKGRTWKPTL 89 (371)
T ss_dssp TTSSEEEEECSSSEEEEEEEETTE--EEEEEEEECCSSCEEEEEEETTTTE-----EEEEETTSCEEEEEEETTEEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEECCCCC--EEEEEEecCCCCCEEEEEECCCCCE-----EEEEECCCeEEEEeeccccccccc
Confidence 444566677778899999876652 2345668899999999999999998 889999999999999877654444
Q ss_pred --ecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 89 --RLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 89 --~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
..+ .+.+++|+|+++.|++++.|+.+++|+................|...|.+++|+|++++|++++.|+.+++||
T Consensus 90 ~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~ 169 (371)
T d1k8kc_ 90 VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 169 (371)
T ss_dssp ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEe
Confidence 344 3677999999999999999999999998876642233444667889999999999999999999999999999
Q ss_pred CCCC------------------eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeE
Q 024185 165 AYGG------------------EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVA 226 (271)
Q Consensus 165 ~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 226 (271)
.... +.......+. ..+.+++|+|+++++++++.|+.|++||+.+++.+..+..|..+|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 247 (371)
T d1k8kc_ 170 AYIKEVEERPAPTPWGSKMPFGELMFESSSSC--GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL 247 (371)
T ss_dssp CCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS--SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEE
T ss_pred eccCccccccccccccccccceeeeeeccCcc--CcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccce
Confidence 8643 2233333343 4599999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcEEEEeC-CeEEEEcCCC
Q 024185 227 CLKWAPRRAMFVAAS-SVLSFWIPNP 251 (271)
Q Consensus 227 ~~~~s~~~~~l~~~~-~~v~iw~~~~ 251 (271)
+++|+|++++|++|+ +.+++|....
T Consensus 248 s~~fs~d~~~la~g~d~~~~~~~~~~ 273 (371)
T d1k8kc_ 248 AVTFITESSLVAAGHDCFPVLFTYDS 273 (371)
T ss_dssp EEEEEETTEEEEEETTSSCEEEEEET
T ss_pred eeeecCCCCEEEEEcCCceEEEEeeC
Confidence 999999999999987 6666665543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.1e-34 Score=227.83 Aligned_cols=232 Identities=15% Similarity=0.161 Sum_probs=188.9
Q ss_pred eecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhcc--CceEEEEEecCccee
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTT--ALEYGIFVLMLASFQ 85 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~ 85 (271)
.|..+.++.+..++.+.+|+...+... ....+..|.+.+.+++|+|+++. +++++. +..+++|++++++..
T Consensus 67 sp~g~~latg~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~d~~~-----l~~~~~~~~~~~~v~~~~~~~~~ 139 (311)
T d1nr0a1 67 SPSGYYCASGDVHGNVRIWDTTQTTHI--LKTTIPVFSGPVKDISWDSESKR-----IAAVGEGRERFGHVFLFDTGTSN 139 (311)
T ss_dssp CTTSSEEEEEETTSEEEEEESSSTTCC--EEEEEECSSSCEEEEEECTTSCE-----EEEEECCSSCSEEEEETTTCCBC
T ss_pred eCCCCeEeccccCceEeeeeeeccccc--cccccccccCccccccccccccc-----ccccccccccccccccccccccc
Confidence 355566667788999999988765322 22446788999999999999998 555554 567999999999988
Q ss_pred EEEecCC--cceEEEcCCCCE-EEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEE
Q 024185 86 GILRLRG--RPTVAFDQQGLV-FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 162 (271)
Q Consensus 86 ~~~~~~~--~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 162 (271)
..+.+|. +.+++|+|++++ |++|+.|+.|++||+++.+. .....+|...|.++.|+|+++++++++.|+.+++
T Consensus 140 ~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~----~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~ 215 (311)
T d1nr0a1 140 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF----KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL 215 (311)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccccccccccccccccccceeeeccccccccccccccccccc----ccccccccccccccccCccccccccccccccccc
Confidence 8888774 567999999985 78899999999999998775 6677889999999999999999999999999999
Q ss_pred EECCCCeEEEEeecCC-----CCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcc-eeEEEEEecCCcE
Q 024185 163 LDAYGGEKRCGFSLEP-----SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG-VVACLKWAPRRAM 236 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~ 236 (271)
||+++++....+.... +...|.+++|+|++++|++|+.||.|++||++++++++++..|.. ....+.+.+++..
T Consensus 216 ~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~ 295 (311)
T d1nr0a1 216 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 295 (311)
T ss_dssp EETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred cccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCE
Confidence 9999998877765321 124599999999999999999999999999999999999876643 2233445555666
Q ss_pred EEEeC--CeEEEEcCC
Q 024185 237 FVAAS--SVLSFWIPN 250 (271)
Q Consensus 237 l~~~~--~~v~iw~~~ 250 (271)
|++++ |.|++||++
T Consensus 296 l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 296 LVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEETTCCEEEEETT
T ss_pred EEEEECCCEEEEEeCC
Confidence 77776 999999975
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.2e-34 Score=224.79 Aligned_cols=230 Identities=12% Similarity=0.160 Sum_probs=195.0
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhh-------------------------
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIAL------------------------- 63 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~------------------------- 63 (271)
|..+.|+.+..|+.+.+|+...+. .+..+.+|.+.|.++.++|++..++..
T Consensus 27 p~~~~l~s~s~Dg~i~iWd~~~~~----~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (317)
T d1vyhc1 27 PVFSVMVSASEDATIKVWDYETGD----FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH 102 (317)
T ss_dssp SSSSEEEEEESSSCEEEEETTTCC----CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSS
T ss_pred CCCCEEEEEeCCCeEEEEECCCCC----EEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccc
Confidence 444556666678999999876652 233356666666666666665543221
Q ss_pred ------------hhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceE
Q 024185 64 ------------CLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT 129 (271)
Q Consensus 64 ------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 129 (271)
.+++++.|+.+++||+++++....+..+. ..+++|+|++++|++++.|+.|++|+..+.+. .
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~----~ 178 (317)
T d1vyhc1 103 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC----K 178 (317)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----E
T ss_pred cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeecccee----e
Confidence 17788999999999999999998888775 55699999999999999999999999998875 6
Q ss_pred EEecCCccceEEEEEcCCC--------------------cEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEEC
Q 024185 130 FLVGGDTAEVCDIKFSNDG--------------------KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 189 (271)
Q Consensus 130 ~~~~~~~~~v~~~~~s~~~--------------------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~ 189 (271)
..+.+|...+.+++|+|++ ..+++++.|+.|++||+++++++..+..|... +.+++|+
T Consensus 179 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~--v~~~~~~ 256 (317)
T d1vyhc1 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW--VRGVLFH 256 (317)
T ss_dssp EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSC--EEEEEEC
T ss_pred EEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCC--EEEEEEC
Confidence 6778899999999998864 36889999999999999999999999888766 9999999
Q ss_pred CCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEc
Q 024185 190 PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 248 (271)
Q Consensus 190 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~ 248 (271)
|++++|++|+.||.|++||+++++++..+.+|...|++++|+|++++|++|+ |+|++||
T Consensus 257 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 257 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 9999999999999999999999999999999999999999999999999997 8899997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-33 Score=224.44 Aligned_cols=226 Identities=14% Similarity=0.113 Sum_probs=192.1
Q ss_pred eecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
.|..+.++.+..++.+..++..... +.....+..|...+..+.++|++.. +++++.|+.+++|++++++....
T Consensus 106 s~dg~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~-----l~s~~~d~~i~~~~~~~~~~~~~ 178 (337)
T d1gxra_ 106 LPDGCTLIVGGEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPDSKV-----CFSCCSDGNIAVWDLHNQTLVRQ 178 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC----EEEEEEECSSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEE
T ss_pred cCCCCEEEEeecccccccccccccc--ccccccccccccccccccccccccc-----ccccccccccccccccccccccc
Confidence 3455667777788999998865432 2344557788999999999999998 88999999999999999998888
Q ss_pred EecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEEC
Q 024185 88 LRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 88 ~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 165 (271)
...|. +.+++|+++++.+++++.|+.+++||+++++. .. ...|...|.+++|+|+++++++++.|+.+++||+
T Consensus 179 ~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~----~~-~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~ 253 (337)
T d1gxra_ 179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ----LQ-QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----EE-EEECSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cccccccccccccccccccccccccccccccccccccee----ec-ccccccceEEEEEcccccccceeccccccccccc
Confidence 87664 66799999999999999999999999988763 22 2347789999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--Ce
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SV 243 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~ 243 (271)
++++... ...|... |.+++|+|++++|++++.||.|++||+.+++.+..+. |...|.+++|+|++++|++++ +.
T Consensus 254 ~~~~~~~-~~~~~~~--i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~ 329 (337)
T d1gxra_ 254 NKPDKYQ-LHLHESC--VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp TSSCEEE-ECCCSSC--EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSC
T ss_pred ccccccc-ccccccc--cceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCe
Confidence 9887654 3345544 9999999999999999999999999999999988875 778899999999999999987 88
Q ss_pred EEEEcC
Q 024185 244 LSFWIP 249 (271)
Q Consensus 244 v~iw~~ 249 (271)
|+|||+
T Consensus 330 I~vWdl 335 (337)
T d1gxra_ 330 ATVYEV 335 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-33 Score=222.45 Aligned_cols=233 Identities=15% Similarity=0.121 Sum_probs=195.0
Q ss_pred eeEEeeecceeeEEEEeeccce-eeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc--ceeEEE
Q 024185 12 QALLFARQNIILILLESLCGIY-QCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA--SFQGIL 88 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~ 88 (271)
.+++++.+++.+.+|+...+.. ..........|.+.|.+++|+|++++ |++++.||.|++||+... +....+
T Consensus 63 g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~-----l~s~~~dg~i~iwd~~~~~~~~~~~~ 137 (337)
T d1gxra_ 63 TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT-----LIVGGEASTLSIWDLAAPTPRIKAEL 137 (337)
T ss_dssp SSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE-----EEEEESSSEEEEEECCCC--EEEEEE
T ss_pred CCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCE-----EEEeeccccccccccccccccccccc
Confidence 4455555688888888654422 22333446688999999999999998 889999999999998754 445556
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
..+. +..++|+|++.++++++.++.+++|++.+++. .....+|...+.+++|+++++.+++++.|+.+++||++
T Consensus 138 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~----~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~ 213 (337)
T d1gxra_ 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL----VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccccc
Confidence 6664 45689999999999999999999999998775 56677899999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
+++.+..+. +.. .+.+++|+|+++++++++.|+.+++||+++++... ...|...|++++|+|++++|++++ +.|
T Consensus 214 ~~~~~~~~~-~~~--~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i 289 (337)
T d1gxra_ 214 EGRQLQQHD-FTS--QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLL 289 (337)
T ss_dssp TTEEEEEEE-CSS--CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cceeecccc-ccc--ceEEEEEcccccccceecccccccccccccccccc-ccccccccceEEECCCCCEEEEEeCCCeE
Confidence 999887765 333 39999999999999999999999999999887754 557899999999999999999987 889
Q ss_pred EEEcCCCCCCCcC
Q 024185 245 SFWIPNPSSNSTD 257 (271)
Q Consensus 245 ~iw~~~~~~~~~~ 257 (271)
++||..+++....
T Consensus 290 ~iwd~~~~~~~~~ 302 (337)
T d1gxra_ 290 NAWRTPYGASIFQ 302 (337)
T ss_dssp EEEETTTCCEEEE
T ss_pred EEEECCCCCEEEE
Confidence 9999998876543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.9e-34 Score=228.03 Aligned_cols=207 Identities=8% Similarity=-0.025 Sum_probs=172.2
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc--eeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCC
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS--FQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSR 120 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 120 (271)
.++|.+++|+|++++ +++++.||.|++||.++++ .+..+++|. +.+++|+|++++|++++.|+.|++||+.
T Consensus 7 ~~pIt~~~~s~dg~~-----la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~ 81 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQ-----IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 81 (371)
T ss_dssp SSCCCEEEECTTSSE-----EEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred CCCeEEEEECCCCCE-----EEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence 367999999999998 8899999999999998775 566677774 6779999999999999999999999998
Q ss_pred CCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEe--ecCCCCCceeeEEECCCCCEEEEe
Q 024185 121 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF--SLEPSPNTNTEATFTPDGQYVVSG 198 (271)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~ 198 (271)
++.. .....+.+|...|.+++|+|+++.|++++.|+.+++|++......... ........|.+++|+|++++|++|
T Consensus 82 ~~~~--~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~ 159 (371)
T d1k8kc_ 82 GRTW--KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159 (371)
T ss_dssp TTEE--EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred cccc--ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecc
Confidence 7654 335566788999999999999999999999999999998665432221 122222459999999999999999
Q ss_pred cCCCcEEEEEcCC------------------ceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCC
Q 024185 199 SGDGTLHAWNINT------------------RNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 199 ~~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~ 258 (271)
+.|+.+++||... ++.+....+|...|.+++|+|++++|++++ +.|++||+.+++.....
T Consensus 160 s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~ 239 (371)
T d1k8kc_ 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 239 (371)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeee
Confidence 9999999999754 235566778999999999999999999987 88999999887765443
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.8e-33 Score=215.65 Aligned_cols=209 Identities=12% Similarity=0.171 Sum_probs=181.5
Q ss_pred EcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cc-----------------------
Q 024185 40 FFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RP----------------------- 94 (271)
Q Consensus 40 ~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~----------------------- 94 (271)
.+++|.+.|.+++|+|++++ |++|+.||+|++||+++++.+..+.+|. +.
T Consensus 12 ~L~GH~~~I~~l~~sp~~~~-----l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 86 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFSV-----MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 86 (317)
T ss_dssp EEECCSSCEEEEEECSSSSE-----EEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred EEcCCCCCeEEEEEcCCCCE-----EEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccc
Confidence 47899999999999999998 8999999999999999887776665432 12
Q ss_pred -------------------eEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe
Q 024185 95 -------------------TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155 (271)
Q Consensus 95 -------------------~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 155 (271)
++.++|+++.+++++.|+.+++||+++++. ...+.+|...+.+++|+|++++|++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (317)
T d1vyhc1 87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC----VKTFTGHREWVRMVRPNQDGTLIASCS 162 (317)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred cccccccccccccccccceeeeccCCCceEEeeccCcceeEeeccccee----eeEEccCCCcceeeecccCCCEEEEEe
Confidence 255666777788888899999999988775 666778999999999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCC--------------------CEEEEecCCCcEEEEEcCCceeE
Q 024185 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG--------------------QYVVSGSGDGTLHAWNINTRNEV 215 (271)
Q Consensus 156 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~~l~~~~~dg~i~iwd~~~~~~~ 215 (271)
.|+.+++|+.++++....+..+... +.++.|+|++ .++++++.|+.|++||+++++++
T Consensus 163 ~d~~v~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 240 (317)
T d1vyhc1 163 NDQTVRVWVVATKECKAELREHRHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240 (317)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSC--EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred CCCeEEEEeeccceeeEEEecCCCC--ceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE
Confidence 9999999999999998888877665 7888887753 47889999999999999999999
Q ss_pred EEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 216 ACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 216 ~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
..+.+|...|.+++|+|++++|++++ |.|++||++++++.....
T Consensus 241 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 286 (317)
T d1vyhc1 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286 (317)
T ss_dssp EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred EEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc
Confidence 99999999999999999999999987 889999999988776543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6e-32 Score=217.83 Aligned_cols=231 Identities=16% Similarity=0.180 Sum_probs=185.2
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++.+..++.+..++...+ .....+.+|...+.++.+++++.. +++++.++.+++||.++.......
T Consensus 131 ~~~~~l~s~~~dg~v~i~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~-----~~~~~~~~~i~~~d~~~~~~~~~~ 201 (388)
T d1erja_ 131 PDGKFLATGAEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFPSGDK-----LVSGSGDRTVRIWDLRTGQCSLTL 201 (388)
T ss_dssp TTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSE-----EEEEETTSEEEEEETTTTEEEEEE
T ss_pred CCCCcceeccccccccccccccc----cccccccccccccccccccccccc-----ccccccceeeeeeecccccccccc
Confidence 44456666778899999988776 455568889999999999999988 789999999999999998877777
Q ss_pred ecCCc-ceEEEc-CCCCEEEEEecCCeEEEEeCCCCCCCcc---eEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEE
Q 024185 89 RLRGR-PTVAFD-QQGLVFAVAMEAGAIKLFDSRSYDKGPF---DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 163 (271)
Q Consensus 89 ~~~~~-~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~ 163 (271)
..+.. ..+.+. +++++|++++.|+.|++||..++..... ......+|.+.|.+++|+|++++|++++.|+.|++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iw 281 (388)
T d1erja_ 202 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281 (388)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEE
Confidence 66543 335554 4789999999999999999988764100 111234688999999999999999999999999999
Q ss_pred ECCCCeEE------------EEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEE-
Q 024185 164 DAYGGEKR------------CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW- 230 (271)
Q Consensus 164 d~~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~- 230 (271)
|+++++.. .....|.. .+.+++|+|++++|++|+.||.|++||+++++++..+++|.+.|.++++
T Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~ 359 (388)
T d1erja_ 282 NLQNANNKSDSKTPNSGTCEVTYIGHKD--FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 359 (388)
T ss_dssp EC---------------CEEEEEECCSS--CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred eccCCccccccccccccceeeecccccc--eEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEe
Confidence 99765432 22333443 4999999999999999999999999999999999999999999999874
Q ss_pred -----ecCCcEEEEeC--CeEEEEcCC
Q 024185 231 -----APRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 231 -----s~~~~~l~~~~--~~v~iw~~~ 250 (271)
+|++++|++|+ |.|++|+++
T Consensus 360 ~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 360 NGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp SSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred cCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 67899999997 899999974
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.3e-32 Score=210.95 Aligned_cols=212 Identities=14% Similarity=0.172 Sum_probs=169.5
Q ss_pred EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe-cC--CcceEEEcCCCCEEEEEecCC
Q 024185 36 MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR-LR--GRPTVAFDQQGLVFAVAMEAG 112 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~d~ 112 (271)
...+.+.+|.+.|.+++|+|++++ |++|+.||+|++||+++++..+.+. .| .+.+++|+|++++ ++++.|+
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~-----l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~ 76 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKT-----LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDD 76 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTT
T ss_pred ccceEcCCCCCCcEEEEECCCCCE-----EEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-eccccee
Confidence 345678999999999999999998 8999999999999999999888774 44 3677999999975 5566799
Q ss_pred eEEEEeCCCCCCCcce-----------EEEec-------------------------CCccceEEEEEcCCCcEEEEEec
Q 024185 113 AIKLFDSRSYDKGPFD-----------TFLVG-------------------------GDTAEVCDIKFSNDGKSMLLTTT 156 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~-----------~~~~~-------------------------~~~~~v~~~~~s~~~~~l~~~~~ 156 (271)
.+++|+.......... ...+. .....+.+++|+|+++++++++.
T Consensus 77 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 156 (299)
T d1nr0a2 77 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ 156 (299)
T ss_dssp EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred eEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999997643220000 00000 01235778899999999999999
Q ss_pred CCeEEEEECCCCeEEEE-eecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE---EecCCcceeEEEEEec
Q 024185 157 NNNIYVLDAYGGEKRCG-FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA---CWNGNIGVVACLKWAP 232 (271)
Q Consensus 157 d~~i~~~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~s~ 232 (271)
|+.+++||+++++.... ...|.. .|.+++|+|+++++++++.|+.|++||+.++.... .+.+|...|++++|+|
T Consensus 157 dg~i~~~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 234 (299)
T d1nr0a2 157 DSKVHVYKLSGASVSEVKTIVHPA--EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 234 (299)
T ss_dssp TSEEEEEEEETTEEEEEEEEECSS--CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred cccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999988876543 334444 49999999999999999999999999998776543 4567889999999999
Q ss_pred CCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 233 RRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 233 ~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
++++|++++ +.|++||++++...
T Consensus 235 ~~~~l~sgs~dg~i~iwd~~~~~~~ 259 (299)
T d1nr0a2 235 DNVRLATGSLDNSVIVWNMNKPSDH 259 (299)
T ss_dssp TSSEEEEEETTSCEEEEETTCTTSC
T ss_pred cccceEEEcCCCEEEEEECCCCCcc
Confidence 999999997 88999999886543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.4e-32 Score=214.29 Aligned_cols=239 Identities=11% Similarity=0.102 Sum_probs=181.8
Q ss_pred ecceeEEeeeccee-eEEEEeeccceeeEEEEEcccccceEEeeEEecC--CchhhhhhhhhhccCceEEEEEecCccee
Q 024185 9 PITQALLFARQNII-LILLESLCGIYQCMIIEFFATSKGIRRGLFLSAC--LQLMIALCLVLLTTALEYGIFVLMLASFQ 85 (271)
Q Consensus 9 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 85 (271)
|..+.++++..+.. +..++...... ........++...+.+++|+|+ +.+ +++|+.||+|++||+..++..
T Consensus 27 ~~~~~la~~~~~~~~i~~~~~~~~~~-~~~~~~~gh~~~~v~~v~fsP~~~g~~-----lasgs~Dg~i~iWd~~~~~~~ 100 (325)
T d1pgua1 27 PTTNAIAYPCGKSAFVRCLDDGDSKV-PPVVQFTGHGSSVVTTVKFSPIKGSQY-----LCSGDESGKVIVWGWTFDKES 100 (325)
T ss_dssp TTTTEEEEEETTEEEEEECCSSCCSS-CSEEEECTTTTSCEEEEEECSSTTCCE-----EEEEETTSEEEEEEEEEEGGG
T ss_pred CCCCEEEEEeCCCEEEEEEeCCCCCc-cceEEEeCCCCCCEEEEEEeeCCCCCE-----EEEEeCCCCEEEeeecCCcce
Confidence 44456666654433 23333322211 1233334444678999999984 456 789999999999999765432
Q ss_pred EE--------EecC--CcceEEEcCCCCEEEEEec--CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcE-EE
Q 024185 86 GI--------LRLR--GRPTVAFDQQGLVFAVAME--AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS-ML 152 (271)
Q Consensus 86 ~~--------~~~~--~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~ 152 (271)
.. +..+ .+.+++|+++++++++++. ++.+.+|+.++++. ...+.+|...|.+++|+|++.+ ++
T Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~~ 176 (325)
T d1pgua1 101 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS----LGEVSGHSQRINACHLKQSRPMRSM 176 (325)
T ss_dssp TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE----EEECCSCSSCEEEEEECSSSSCEEE
T ss_pred eeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc----ceeeeecccccccccccccccceEE
Confidence 22 2233 3567999999999888754 66899999988775 6677889999999999998875 67
Q ss_pred EEecCCeEEEEECCCCeEEEEeecC-CCCCceeeEEECCC-CCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEE
Q 024185 153 LTTTNNNIYVLDAYGGEKRCGFSLE-PSPNTNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW 230 (271)
Q Consensus 153 ~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 230 (271)
+++.|+.+++||.+..+....+..+ .....|.+++|+|+ ++++++++.||.|++||+++++.+..+.+|..++.++.|
T Consensus 177 ~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~ 256 (325)
T d1pgua1 177 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 256 (325)
T ss_dssp EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEE
T ss_pred EeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccccccccee
Confidence 7899999999999988876665443 33356999999997 689999999999999999999999999999888776666
Q ss_pred e---cCCcEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 231 A---PRRAMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 231 s---~~~~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
+ |+|++|++++ +.|+|||++++++...
T Consensus 257 s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~ 288 (325)
T d1pgua1 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQK 288 (325)
T ss_dssp EEEESSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred eeeccCCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 6 6889999987 8899999998876543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-31 Score=214.18 Aligned_cols=202 Identities=17% Similarity=0.261 Sum_probs=168.2
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC--------------------CcceEEEcCCC
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR--------------------GRPTVAFDQQG 102 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------------~~~~~~~~~~~ 102 (271)
.|++.|.+++|+|+|++ |++|+ |+.|++||+.+++.+..+..+ .+.+++|+|++
T Consensus 60 ~H~~~V~~l~fs~dg~~-----lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~ 133 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEY-----LATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 133 (388)
T ss_dssp ECSSCCCEEEECTTSSE-----EEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred CCCCcEEEEEECCCCCE-----EEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCC
Confidence 58999999999999998 77776 899999999998887766432 15669999999
Q ss_pred CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCc
Q 024185 103 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT 182 (271)
Q Consensus 103 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 182 (271)
++|++|+.||.|++||...++. .....+|...|.++++++++..+++++.++.+++||.++.........+..
T Consensus 134 ~~l~s~~~dg~v~i~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--- 206 (388)
T d1erja_ 134 KFLATGAEDRLIRIWDIENRKI----VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG--- 206 (388)
T ss_dssp SEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC---
T ss_pred Ccceeccccccccccccccccc----ccccccccccccccccccccccccccccceeeeeeeccccccccccccccc---
Confidence 9999999999999999988775 666788999999999999999999999999999999999888777665544
Q ss_pred eeeEEE-CCCCCEEEEecCCCcEEEEEcCCceeEEEe-------cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 183 NTEATF-TPDGQYVVSGSGDGTLHAWNINTRNEVACW-------NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 183 v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
..++.+ .++++++++++.||.|++||.+++.....+ .+|...|.+++|+|++++|++++ +.+++||+.++
T Consensus 207 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~ 286 (388)
T d1erja_ 207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 286 (388)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCC
Confidence 344445 558899999999999999999998877665 45788999999999999999987 88999999877
Q ss_pred CCCcC
Q 024185 253 SNSTD 257 (271)
Q Consensus 253 ~~~~~ 257 (271)
.....
T Consensus 287 ~~~~~ 291 (388)
T d1erja_ 287 NNKSD 291 (388)
T ss_dssp -----
T ss_pred ccccc
Confidence 65443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.98 E-value=3.1e-30 Score=200.86 Aligned_cols=226 Identities=15% Similarity=0.194 Sum_probs=170.6
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEc-ccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce---
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFF-ATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF--- 84 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--- 84 (271)
|..+.++.+..++.+..|+...+ ...+.+ ..|...|.+++|+|++.+ ++++.|+.+++|+......
T Consensus 22 ~dg~~l~s~s~Dg~v~vWd~~~~----~~~~~~~~~h~~~v~~v~~~~~g~~------~~~~~d~~v~~~~~~~~~~~~~ 91 (299)
T d1nr0a2 22 ADGKTLFSADAEGHINSWDISTG----ISNRVFPDVHATMITGIKTTSKGDL------FTVSWDDHLKVVPAGGSGVDSS 91 (299)
T ss_dssp TTSSEEEEEETTSCEEEEETTTC----CEEECSSCSCSSCEEEEEECTTSCE------EEEETTTEEEEECSSSSSSCTT
T ss_pred CCCCEEEEEcCCCeEEEEECCCC----cEEEEEcCCCCCcEEEEEeecccee------ecccceeeEEEeccCCcccccc
Confidence 44455666677899999987766 223334 578899999999999874 4678899999998643110
Q ss_pred ------------------------------eEE---------EecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCC
Q 024185 85 ------------------------------QGI---------LRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG 125 (271)
Q Consensus 85 ------------------------------~~~---------~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 125 (271)
+.. ...+...+++|+|+++++++++.||.|++||+++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~- 170 (299)
T d1nr0a2 92 KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV- 170 (299)
T ss_dssp SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 000 0112355689999999999999999999999987653
Q ss_pred cceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEE---eecCCCCCceeeEEECCCCCEEEEecCCC
Q 024185 126 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG---FSLEPSPNTNTEATFTPDGQYVVSGSGDG 202 (271)
Q Consensus 126 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 202 (271)
.......|...|.+++|+|++++|++++.|+.|++||+.++..... +..|.. .|.+++|+|+++++++|+.||
T Consensus 171 --~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~~~~~l~sgs~dg 246 (299)
T d1nr0a2 171 --SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA--KVACVSWSPDNVRLATGSLDN 246 (299)
T ss_dssp --EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS--CEEEEEECTTSSEEEEEETTS
T ss_pred --ccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccceEEEcCCC
Confidence 2333456889999999999999999999999999999988765443 333444 499999999999999999999
Q ss_pred cEEEEEcCCceeE--EEecCC-cceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 203 TLHAWNINTRNEV--ACWNGN-IGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 203 ~i~iwd~~~~~~~--~~~~~~-~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
.|++||++++... .....| ...+.++.| +++++|++++ +.|++||+.
T Consensus 247 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 247 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp CEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred EEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 9999999876543 333333 445666655 5567788876 889999984
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.1e-28 Score=194.53 Aligned_cols=230 Identities=13% Similarity=0.089 Sum_probs=175.3
Q ss_pred eEEeeecceeeEEEEeecccee----eEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 13 ALLFARQNIILILLESLCGIYQ----CMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
.++-+..++.+.+|+...+... ......+..+.+.+.++.|+++++.++. ++++.++.+++|+.++++.+..+
T Consensus 79 ~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~ 155 (325)
T d1pgua1 79 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV---VGEGRDNFGVFISWDSGNSLGEV 155 (325)
T ss_dssp EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE---EECCSSCSEEEEETTTCCEEEEC
T ss_pred EEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccce---eeccccceEEEEeecccccceee
Confidence 3344567899999887654321 1222346678899999999999998322 23356788999999999999999
Q ss_pred ecCC--cceEEEcCCCCE-EEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEE
Q 024185 89 RLRG--RPTVAFDQQGLV-FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d 164 (271)
.+|. +.+++|+|++.+ +++++.|+.+++||....+. ........+|...|.+++|+|+ ++++++++.|+.|++||
T Consensus 156 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd 234 (325)
T d1pgua1 156 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 234 (325)
T ss_dssp CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred eecccccccccccccccceEEEeeccccccccccccccc-ceecccccCCCCccEEeeeccccceeccccccccceeeee
Confidence 8775 566999999875 67889999999999887653 0111223467788999999996 68899999999999999
Q ss_pred CCCCeEEEEeecCCCCCceeeEEEC---CCCCEEEEecCCCcEEEEEcCCceeEEEecCCcce--eEEEE--EecCCcEE
Q 024185 165 AYGGEKRCGFSLEPSPNTNTEATFT---PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV--VACLK--WAPRRAMF 237 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~--~s~~~~~l 237 (271)
+++++.+..+..|... +..+.|+ |+|++|++++.|+.|++||+++++++..+..|... +..++ |.+++ +|
T Consensus 235 ~~~~~~~~~l~~~~~~--v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l 311 (325)
T d1pgua1 235 GKSGEFLKYIEDDQEP--VQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RI 311 (325)
T ss_dssp TTTCCEEEECCBTTBC--CCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT-EE
T ss_pred eccccccccccccccc--cccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCC-EE
Confidence 9999999999877765 4444444 78999999999999999999999999887665543 33444 44444 56
Q ss_pred EEeC--CeEEEEcC
Q 024185 238 VAAS--SVLSFWIP 249 (271)
Q Consensus 238 ~~~~--~~v~iw~~ 249 (271)
++++ |.|++||+
T Consensus 312 ~s~s~dg~i~vwdl 325 (325)
T d1pgua1 312 ISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEETTSCEEEEET
T ss_pred EEEECCCEEEEEEC
Confidence 7776 88999996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.6e-27 Score=188.46 Aligned_cols=231 Identities=9% Similarity=0.135 Sum_probs=179.3
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
.+.|+.+..++.+..|+...+ ..+..+.+|++.|.+++|+|++ . +++++.|+.|++|+....+.......
T Consensus 23 ~~~l~tgs~Dg~i~vWd~~~~----~~~~~l~~H~~~V~~l~~s~~~-~-----l~s~s~D~~i~iw~~~~~~~~~~~~~ 92 (355)
T d1nexb2 23 DNYVITGADDKMIRVYDSINK----KFLLQLSGHDGGVWALKYAHGG-I-----LVSGSTDRTVRVWDIKKGCCTHVFEG 92 (355)
T ss_dssp TTEEEEEETTTEEEEEETTTT----EEEEEEECCSSCEEEEEEETTT-E-----EEEEETTCCEEEEETTTTEEEEEECC
T ss_pred CCEEEEEeCCCeEEEEECCCC----cEEEEEECCCCCEEEEEEcCCC-E-----EEEEeccccccccccccccccccccc
Confidence 345555677899999998777 5566789999999999999965 4 77999999999999988877666544
Q ss_pred CC----cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCC-----------------------------------------
Q 024185 91 RG----RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG----------------------------------------- 125 (271)
Q Consensus 91 ~~----~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----------------------------------------- 125 (271)
.. .....++++++++++++.|+.|++||+.+....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (355)
T d1nexb2 93 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN 172 (355)
T ss_dssp CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETT
T ss_pred ccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccc
Confidence 32 223666788888888888888888887653210
Q ss_pred ------------------cceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEE
Q 024185 126 ------------------PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 187 (271)
Q Consensus 126 ------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~ 187 (271)
........++...+.++.|+|+++++++++.|+.|++||+++++.+..+..|... |.+++
T Consensus 173 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~--v~~~~ 250 (355)
T d1nexb2 173 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL--VGLLR 250 (355)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSC--CCEEE
T ss_pred eeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccc--ccccc
Confidence 0001123345567788999999999999999999999999999999999888766 88888
Q ss_pred ECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEE-EEecCCcEEEEeC-CeEEEEcCCCCCCCcC
Q 024185 188 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACL-KWAPRRAMFVAAS-SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 188 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~-~~v~iw~~~~~~~~~~ 257 (271)
+++ +++++++.||.|++||++++...... |...+.++ .++++++++++++ +.|++||+++++++..
T Consensus 251 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~ 318 (355)
T d1nexb2 251 LSD--KFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 318 (355)
T ss_dssp ECS--SEEEEECTTSEEEEEETTTCCEEEEE--ECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCS
T ss_pred ccc--ceeeeeecccccccccccccceeccc--ccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEE
Confidence 864 68999999999999999887765443 44445554 5678888888887 9999999999887643
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.1e-29 Score=202.83 Aligned_cols=226 Identities=15% Similarity=0.178 Sum_probs=162.9
Q ss_pred ecceeeEEEEeeccceeeE-E---EEE--cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc--------
Q 024185 18 RQNIILILLESLCGIYQCM-I---IEF--FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-------- 83 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~-~---~~~--~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------- 83 (271)
..++.+..++......... . ... ...+......+.+.++........+++++.||.+++|++....
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 4477777776554321111 0 111 1223445666777776543222227789999999999985321
Q ss_pred -------eeEEEec---C--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceE----EEecCCccceEEEEEcCC
Q 024185 84 -------FQGILRL---R--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT----FLVGGDTAEVCDIKFSND 147 (271)
Q Consensus 84 -------~~~~~~~---~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~ 147 (271)
....... + .+.+++|+|++ +|++|+.|+.|++||+.+++. ... ..+.+|..+|.+++|+||
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~--~~~~~~~~~l~~h~~~V~~l~~spd 242 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP--LYNFESQHSMINNSNSIRSVKFSPQ 242 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE--EEEEECCC---CCCCCEEEEEECSS
T ss_pred eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccc--ccccccccccccccceEEEcccccc
Confidence 0011111 1 25679999998 889999999999999988764 221 234578999999999999
Q ss_pred CcEEEEEecCC---eEEEEECCCCeEEEEee-------------cCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC
Q 024185 148 GKSMLLTTTNN---NIYVLDAYGGEKRCGFS-------------LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 148 ~~~l~~~~~d~---~i~~~d~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
|++|++|+.|+ .|++||+++++.+..+. +|.. .|++++|+||+++|++++.|++|++||+++
T Consensus 243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~--~V~~l~fspd~~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS--WVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS--CEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccC--ceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence 99999999886 49999999998887764 3444 499999999999999999999999999999
Q ss_pred ceeEEEecCCcceeE----EEEEecCCcEEEEeC-CeEEEEc
Q 024185 212 RNEVACWNGNIGVVA----CLKWAPRRAMFVAAS-SVLSFWI 248 (271)
Q Consensus 212 ~~~~~~~~~~~~~v~----~~~~s~~~~~l~~~~-~~v~iw~ 248 (271)
++++.++.+|...|. .++|+|++..+++++ ..++.|.
T Consensus 321 g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (393)
T d1sq9a_ 321 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK 362 (393)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC
T ss_pred CCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECc
Confidence 999999999998775 588999999887665 4454443
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.3e-28 Score=194.08 Aligned_cols=192 Identities=18% Similarity=0.169 Sum_probs=161.1
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhh-------------------------
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIAL------------------------- 63 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~------------------------- 63 (271)
|..+.|+.+..++.+..|+...+ ..+..+..|...|.+++|+|++.+++..
T Consensus 65 ~~~~~l~sgs~Dg~v~iWd~~~~----~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 140 (340)
T d1tbga_ 65 TDSRLLVSASQDGKLIIWDSYTT----NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 140 (340)
T ss_dssp TTSSEEEEEETTTEEEEEETTTT----EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEEC
T ss_pred CCCCEEEEEECCCceeeeecccc----eeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecc
Confidence 44556666777999999998777 4556688899999999999998764321
Q ss_pred ---------------------------------------------------------hhhhhccCceEEEEEecCcceeE
Q 024185 64 ---------------------------------------------------------CLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 64 ---------------------------------------------------------~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
.+++++.|+.+++||+++++.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~ 220 (340)
T d1tbga_ 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220 (340)
T ss_dssp CCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEE
Confidence 04566777788888888888777
Q ss_pred EEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 87 ILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 87 ~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
.+.+|. +.+++|+|++++|++++.||.|++||+...+. ........+...+.+++|+|++++|++|+.||.|++||
T Consensus 221 ~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd 298 (340)
T d1tbga_ 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEE
T ss_pred EEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccc--ccccccccccCceEEEEECCCCCEEEEEECCCEEEEEE
Confidence 777764 56799999999999999999999999987664 33444556778899999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEE
Q 024185 165 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 208 (271)
+.+++.+..+.+|... |.+++|+|++++|++|+.||.|++||
T Consensus 299 ~~~~~~~~~~~~H~~~--V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 299 ALKADRAGVLAGHDNR--VSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTTCCEEEEECCCSSC--EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCcEEEEEcCCCCC--EEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9999999999988876 99999999999999999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.2e-28 Score=197.79 Aligned_cols=193 Identities=9% Similarity=0.121 Sum_probs=147.9
Q ss_pred hhhhccCceEEEEEecCcceeEEE------------ecCCcceEEEcCC-----CCEEEEEecCCeEEEEeCCCCCC---
Q 024185 65 LVLLTTALEYGIFVLMLASFQGIL------------RLRGRPTVAFDQQ-----GLVFAVAMEAGAIKLFDSRSYDK--- 124 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~------------~~~~~~~~~~~~~-----~~~l~~~~~d~~i~i~d~~~~~~--- 124 (271)
+++++.||.+++|++........+ ..+....++|.++ +.++++++.||.+++|++.....
T Consensus 82 ~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~ 161 (393)
T d1sq9a_ 82 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 161 (393)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccc
Confidence 668999999999998654322111 1123445777665 46889999999999999753221
Q ss_pred ------Ccce-----EEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecC----CCCCceeeEEEC
Q 024185 125 ------GPFD-----TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE----PSPNTNTEATFT 189 (271)
Q Consensus 125 ------~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~----~~~~~v~~~~~~ 189 (271)
.... ......+...+.+++|+|++ +|++|+.|++|++||+++++++..+... .+...|.+++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 240 (393)
T d1sq9a_ 162 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240 (393)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred eeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccc
Confidence 0000 11122344568899999997 7899999999999999999887765432 122459999999
Q ss_pred CCCCEEEEecCCCc---EEEEEcCCceeEEEec-------------CCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 190 PDGQYVVSGSGDGT---LHAWNINTRNEVACWN-------------GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 190 ~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
|||++|++|+.|++ |++||+++++.+..+. +|...|++++|+||+++|++++ ++|++||+++
T Consensus 241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence 99999999998874 9999999998888763 7999999999999999999998 8999999999
Q ss_pred CCCCcCC
Q 024185 252 SSNSTDE 258 (271)
Q Consensus 252 ~~~~~~~ 258 (271)
++++...
T Consensus 321 g~~~~~l 327 (393)
T d1sq9a_ 321 KERITTL 327 (393)
T ss_dssp TEEEEEE
T ss_pred CCEEEEE
Confidence 8766543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.4e-28 Score=189.05 Aligned_cols=214 Identities=15% Similarity=0.170 Sum_probs=164.5
Q ss_pred EEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc----------
Q 024185 14 LLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS---------- 83 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------- 83 (271)
|+-+..++.+..|+...+ ...|...|.++.+++++. +++++.|+++++|+..+.+
T Consensus 24 l~sgs~Dg~v~~Wd~~~~---------~~~h~~~V~~~~~~~~~~------~~s~s~D~~v~~w~~~~~~~~~~~~~~~~ 88 (287)
T d1pgua2 24 LISGSYDGRIMEWSSSSM---------HQDHSNLIVSLDNSKAQE------YSSISWDDTLKVNGITKHEFGSQPKVASA 88 (287)
T ss_dssp TEEEETTSCEEETTTTEE---------ECCCCSCEEEEECCSTTC------CEEEETTTEEEETTEEEEECSSCEEEEEE
T ss_pred EEEEeCCCeEEEEECCCC---------CCCCCCCEEEEEecCCCe------EEEEeeccccccccccccccccceeeeee
Confidence 666677899999876544 467888999999887654 5688999999999765321
Q ss_pred ------------------------eeEEEecCCcceEEEcCCCCEEEEEecCC-eEEEEeCCCCCCCcceEEE-ecCCcc
Q 024185 84 ------------------------FQGILRLRGRPTVAFDQQGLVFAVAMEAG-AIKLFDSRSYDKGPFDTFL-VGGDTA 137 (271)
Q Consensus 84 ------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~-~~~~~~ 137 (271)
.+..+.. ...+.+++++++.+++++.++ .+++|++...+. ... ...|..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~----~~~~~~~~~~ 163 (287)
T d1pgua2 89 NNDGFTAVLTNDDDLLILQSFTGDIIKSVRL-NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV----SFDLKTPLRA 163 (287)
T ss_dssp CSSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE----EEECSSCCSS
T ss_pred ccCCceEEEeecccceeeeccceeeeeeccc-cceeeeeeccCcceeeeccccceeeeeeccccce----eeeeeeccCC
Confidence 1111111 123466778888888887765 799999876543 222 235778
Q ss_pred ceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEE-eecCCCCCceeeEEECCC----------CCEEEEecCCCcEEE
Q 024185 138 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG-FSLEPSPNTNTEATFTPD----------GQYVVSGSGDGTLHA 206 (271)
Q Consensus 138 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~----------~~~l~~~~~dg~i~i 206 (271)
.+++++|+|++++|++++.||.|++||+.+++.... +..|... |.+++|+|+ +.++++|+.|+.|++
T Consensus 164 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~--v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~i 241 (287)
T d1pgua2 164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSK--INAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 241 (287)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSC--EEEEEECCCC------CCSCCEEEEEETTSCEEE
T ss_pred ceeEEEeccCccccccccccccccceeecccccccccccccccc--cceeeecccccccccccCCCCeeEeecCCCeEEE
Confidence 899999999999999999999999999999887553 4555554 999999875 468999999999999
Q ss_pred EEcCC-ceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcC
Q 024185 207 WNINT-RNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIP 249 (271)
Q Consensus 207 wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~ 249 (271)
||+++ .+.+..+.+|...|++++|+|++.++.++. +.|++|++
T Consensus 242 w~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 242 YSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp EESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred EECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence 99977 566777889999999999999986444444 89999985
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.1e-27 Score=183.85 Aligned_cols=179 Identities=13% Similarity=0.170 Sum_probs=154.0
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF 144 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (271)
++.++.|+.+++||....+.+..+.+|......+++++.++++++.||.|++||++..+. ...+.+|...+.++++
T Consensus 150 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~----~~~~~~~~~~v~~~~~ 225 (342)
T d2ovrb2 150 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC----IHTLTGHQSLTSGMEL 225 (342)
T ss_dssp EEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE----EEEECCCCSCEEEEEE
T ss_pred eeeecCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeeccccee----eeEecccccceeEEec
Confidence 678899999999999999999999999888888888999999999999999999998875 6677889999998887
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCC-CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec----
Q 024185 145 SNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS-PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN---- 219 (271)
Q Consensus 145 s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---- 219 (271)
++ ++|++++.|+.|++||+...+....+..+.. ...+.++.+ +++++++|+.||.|++||+++++.++.+.
T Consensus 226 ~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~ 301 (342)
T d2ovrb2 226 KD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 301 (342)
T ss_dssp ET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTT
T ss_pred CC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccC
Confidence 65 6899999999999999999888777765443 234555555 56799999999999999999999988773
Q ss_pred -CCcceeEEEEEecCCcEEEEeC--Ce----EEEEcCCC
Q 024185 220 -GNIGVVACLKWAPRRAMFVAAS--SV----LSFWIPNP 251 (271)
Q Consensus 220 -~~~~~v~~~~~s~~~~~l~~~~--~~----v~iw~~~~ 251 (271)
+|.+.|++++|+|++.++++|+ |+ |++||++.
T Consensus 302 ~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 302 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 5777899999999999999997 53 99999864
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2e-27 Score=187.92 Aligned_cols=203 Identities=12% Similarity=0.099 Sum_probs=155.2
Q ss_pred EEcccccceE-EeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEE
Q 024185 39 EFFATSKGIR-RGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIK 115 (271)
Q Consensus 39 ~~~~~~~~~v-~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~ 115 (271)
..+++|...| .|+ ++++++ |++|+.||+|++||+++++.+.++.+|. +.+++|+|+ ++|++++.|+.|+
T Consensus 6 ~tL~GH~~~vitc~--~~~~~~-----l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~ 77 (355)
T d1nexb2 6 TTLRGHMTSVITCL--QFEDNY-----VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVR 77 (355)
T ss_dssp EEEECCSSSCEEEE--EEETTE-----EEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEE
T ss_pred EEECCcCCCcEEEE--EECCCE-----EEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccc
Confidence 3478898775 544 556777 8899999999999999999999999885 667999985 5799999999999
Q ss_pred EEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC---------------------------
Q 024185 116 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--------------------------- 168 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--------------------------- 168 (271)
+|+....+. ........+........+++++.++++++.|+.|++||+++.
T Consensus 78 iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (355)
T d1nexb2 78 VWDIKKGCC--THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 155 (355)
T ss_dssp EEETTTTEE--EEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEE
T ss_pred ccccccccc--ccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceee
Confidence 999987654 222222223333445556667777777777777777776542
Q ss_pred ------------------------------------eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc
Q 024185 169 ------------------------------------EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR 212 (271)
Q Consensus 169 ------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 212 (271)
+.+.....+. ..+.++.++|+++++++++.|+.|++||++++
T Consensus 156 ~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 233 (355)
T d1nexb2 156 VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMDTTIRIWDLENG 233 (355)
T ss_dssp EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTC
T ss_pred eeeeccccccccccccceeeeecccceeeeeecccccceeeeeccc--cccccccccccceeeecccccceEEeeecccc
Confidence 2222222222 23677889999999999999999999999999
Q ss_pred eeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 213 NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
..+..+.+|...|.+++|+ +++|++++ |.|++||+++....
T Consensus 234 ~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~ 276 (355)
T d1nexb2 234 ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK 276 (355)
T ss_dssp CEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE
T ss_pred ccccccccccccccccccc--cceeeeeeccccccccccccccee
Confidence 9999999999999999886 46888887 88999999876543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=1.2e-26 Score=184.37 Aligned_cols=181 Identities=13% Similarity=0.032 Sum_probs=138.7
Q ss_pred cceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhcc-C-ceEEEEEecCcceeEE
Q 024185 10 ITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTT-A-LEYGIFVLMLASFQGI 87 (271)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~-d-g~i~iwd~~~~~~~~~ 87 (271)
..+.+.+ .+++.+..++...+ ...+ + .|...+.+++|+|+|+. |++++. + ..+++||.++++..+.
T Consensus 14 dG~~~a~-~~~g~v~v~d~~~~----~~~~-~-~~~~~v~~~~~spDg~~-----l~~~~~~~g~~v~v~d~~~~~~~~~ 81 (360)
T d1k32a3 14 DGDLIAF-VSRGQAFIQDVSGT----YVLK-V-PEPLRIRYVRRGGDTKV-----AFIHGTREGDFLGIYDYRTGKAEKF 81 (360)
T ss_dssp GGGCEEE-EETTEEEEECTTSS----BEEE-C-SCCSCEEEEEECSSSEE-----EEEEEETTEEEEEEEETTTCCEEEC
T ss_pred CCCEEEE-EECCeEEEEECCCC----cEEE-c-cCCCCEEEEEECCCCCE-----EEEEEcCCCCEEEEEECCCCcEEEe
Confidence 3444444 45778888877655 2223 3 57889999999999998 544443 3 4799999988876544
Q ss_pred EecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec----------
Q 024185 88 LRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---------- 156 (271)
Q Consensus 88 ~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------- 156 (271)
.... .+..++|+|++++|++++.++.+++|+..+++. ...+..|...+.+++|+|||++|+.+..
T Consensus 82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~ 157 (360)
T d1k32a3 82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP----TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYV 157 (360)
T ss_dssp CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCC
T ss_pred eCCCceEEeeeecccccccceeccccccccccccccce----eeeeecccccccchhhccceeeeeeeccccccceeecc
Confidence 3332 356799999999999999999999999998875 5566778889999999999999986542
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEc
Q 024185 157 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 209 (271)
Q Consensus 157 d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 209 (271)
++.+++||+.+++...... +.. .+..+.|+|||++|++++.++.+.+||.
T Consensus 158 ~~~~~v~d~~~~~~~~~~~-~~~--~~~~~~~spdg~~l~~~s~~~~~~~~d~ 207 (360)
T d1k32a3 158 MQAIHVYDMEGRKIFAATT-ENS--HDYAPAFDADSKNLYYLSYRSLDPSPDR 207 (360)
T ss_dssp EEEEEEEETTTTEEEECSC-SSS--BEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred ccceeeeccccCceeeecc-ccc--ccccccccCCCCEEEEEeCCCceEcccc
Confidence 4569999999887655433 333 3777899999999999998888888874
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.2e-26 Score=182.17 Aligned_cols=213 Identities=11% Similarity=0.078 Sum_probs=153.0
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE---ecC--CcceEEEcCCC-CEEEEEec
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL---RLR--GRPTVAFDQQG-LVFAVAME 110 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~--~~~~~~~~~~~-~~l~~~~~ 110 (271)
.++..++|++.|.+++|+|++++ |++++.||+|++||++++.....+ ..| .+.+++|+|++ .+|++|+.
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~~-----L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~ 77 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKSL-----LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTE-----EEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET
T ss_pred eEEcCCCCCCCEEEEEEeCCCCE-----EEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccc
Confidence 45678899999999999999998 899999999999999876543322 234 46779999865 58999999
Q ss_pred CCeEEEEeCCCCCCCcceEEEec-CCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEE----EEeecCCCCCceee
Q 024185 111 AGAIKLFDSRSYDKGPFDTFLVG-GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR----CGFSLEPSPNTNTE 185 (271)
Q Consensus 111 d~~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~----~~~~~~~~~~~v~~ 185 (271)
||.|++|+...... ..... .+........+.+++..+++++.++.+++||++++... .....+........
T Consensus 78 d~~v~~w~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (342)
T d1yfqa_ 78 QGEILKVDLIGSPS----FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKI 153 (342)
T ss_dssp TSCEEEECSSSSSS----EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCE
T ss_pred ccceeeeecccccc----cccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeee
Confidence 99999999988765 33332 33344455667778889999999999999998643322 22222222222344
Q ss_pred EEECCCCCEEEEecCCCcEEEEEcCCceeEE-------------------------------------------------
Q 024185 186 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVA------------------------------------------------- 216 (271)
Q Consensus 186 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------------------------------------------- 216 (271)
..+.++++.+++++.|+.|++||++..+...
T Consensus 154 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~ 233 (342)
T d1yfqa_ 154 FTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp EEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred eeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecc
Confidence 5666677777777777777777764322100
Q ss_pred ---E---------ecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCC
Q 024185 217 ---C---------WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 217 ---~---------~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~ 258 (271)
. ..+|...+++++|+|++++|++|+ |.|++||+++++.+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~ 289 (342)
T d1yfqa_ 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred ccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEe
Confidence 0 013445688999999999999998 88999999998766544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=9e-25 Score=171.68 Aligned_cols=225 Identities=14% Similarity=0.202 Sum_probs=170.1
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
.+.|+-+..++.+.+|+...+ ..++.+.+|.+.|.++.++|+ . +++++.|+.+++|+............
T Consensus 27 g~~l~sgs~Dg~i~vWd~~~~----~~~~~~~~h~~~V~~v~~~~~--~-----l~s~s~D~~~~~~~~~~~~~~~~~~~ 95 (342)
T d2ovrb2 27 GNRIVSGSDDNTLKVWSAVTG----KCLRTLVGHTGGVWSSQMRDN--I-----IISGSTDRTLKVWNAETGECIHTLYG 95 (342)
T ss_dssp TTEEEEEETTSCEEEEETTTC----CEEEECCCCSSCEEEEEEETT--E-----EEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCEEEEEeCCCeEEEEECCCC----CEEEEEeCCCCCEEEEEeCCC--c-----cccceecccccccccccccceecccc
Confidence 345555677899999998777 455678999999999999975 4 77999999999999865543322211
Q ss_pred CC----------------------------------------cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEE
Q 024185 91 RG----------------------------------------RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF 130 (271)
Q Consensus 91 ~~----------------------------------------~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 130 (271)
+. .......+....++.++.|+.+++||....+. ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~----~~ 171 (342)
T d2ovrb2 96 HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC----LH 171 (342)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEE----EE
T ss_pred cceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccccee----eE
Confidence 11 11122334455678888899999999887664 56
Q ss_pred EecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC
Q 024185 131 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210 (271)
Q Consensus 131 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 210 (271)
.+.+|...+..+ ++++.++++++.||.|++||++.++.+..+..|... +.+++++ ++++++++.||.|++||+.
T Consensus 172 ~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~--v~~~~~~--~~~l~s~s~d~~i~iwd~~ 245 (342)
T d2ovrb2 172 TLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL--TSGMELK--DNILVSGNADSTVKIWDIK 245 (342)
T ss_dssp EECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSC--EEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred EEcCcccccccc--cCCCCEEEEEeCCCeEEEeecccceeeeEecccccc--eeEEecC--CCEEEEEcCCCEEEEEecc
Confidence 677777666655 456789999999999999999999999988877765 7666654 5699999999999999999
Q ss_pred CceeEEEecC---CcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCC
Q 024185 211 TRNEVACWNG---NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 211 ~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~ 258 (271)
..+....+.. |...+.++.+ +++++++++ |.|++||+++++.....
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~ 296 (342)
T d2ovrb2 246 TGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNL 296 (342)
T ss_dssp TCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred cccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEE
Confidence 9888887755 4455555555 567888887 89999999998876543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=7.6e-26 Score=179.72 Aligned_cols=189 Identities=11% Similarity=-0.010 Sum_probs=156.3
Q ss_pred eEEec-CCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCC--eEEEEeCCCCCCCcc
Q 024185 51 LFLSA-CLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAG--AIKLFDSRSYDKGPF 127 (271)
Q Consensus 51 ~~~s~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~ 127 (271)
-.||| ||++ ++++ .+|.|++||.++++.++..+...+.+++|+|||++|++++.+. .|++||.++++
T Consensus 8 ~~fSP~dG~~-----~a~~-~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~---- 77 (360)
T d1k32a3 8 EDFSPLDGDL-----IAFV-SRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK---- 77 (360)
T ss_dssp EEEEECGGGC-----EEEE-ETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC----
T ss_pred ccccCCCCCE-----EEEE-ECCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc----
Confidence 46899 8997 4444 4689999999988877665555677899999999998876553 79999999876
Q ss_pred eEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec--------
Q 024185 128 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-------- 199 (271)
Q Consensus 128 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------- 199 (271)
...+..|...+.+++|+|||++|++++.++.+++|++.+++....+..+... +.+++|+|||++|+.+.
T Consensus 78 -~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~spdg~~la~~~~~~~~~~~ 154 (360)
T d1k32a3 78 -AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM--ITDFTISDNSRFIAYGFPLKHGETD 154 (360)
T ss_dssp -EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC--CCCEEECTTSCEEEEEEEECSSTTC
T ss_pred -EEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeeccccc--ccchhhccceeeeeeecccccccee
Confidence 4566789999999999999999999999999999999999988888777655 78899999999998543
Q ss_pred --CCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 200 --GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 200 --~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
.++.+++||+.+++..... .+...+..++|+|||++|++++ +.+++|+.....
T Consensus 155 ~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~ 211 (360)
T d1k32a3 155 GYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 211 (360)
T ss_dssp SCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred eccccceeeeccccCceeeec-ccccccccccccCCCCEEEEEeCCCceEcccccccc
Confidence 3457999999988765544 4667788999999999999887 778999876543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=5.7e-24 Score=163.48 Aligned_cols=223 Identities=13% Similarity=0.136 Sum_probs=180.7
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
.+.|+.+..|+.+.+|+...+ ..+..+.+|.+.|.++.+ ++++ |++|+.|+.+++|++..+........
T Consensus 25 ~~~l~sgs~Dg~i~vWd~~~~----~~~~~l~~H~~~V~~v~~--~~~~-----l~s~s~D~~i~~~~~~~~~~~~~~~~ 93 (293)
T d1p22a2 25 DQKIVSGLRDNTIKIWDKNTL----ECKRILTGHTGSVLCLQY--DERV-----IITGSSDSTVRVWDVNTGEMLNTLIH 93 (293)
T ss_dssp SSEEEEEESSSCEEEEESSSC----CEEEEECCCSSCEEEEEC--CSSE-----EEEEETTSCEEEEESSSCCEEEEECC
T ss_pred CCEEEEEeCCCeEEEEECCCC----cEEEEEecCCCCEeeeec--ccce-----eecccccccccccccccccccccccc
Confidence 345555677899999988766 455668899999988766 5666 88999999999999999888777776
Q ss_pred CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 91 RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
.......+.+....++++..++.+.+|+...... ......+..|...+.++.+.+ ..+++++.|+.+++||+++++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~ 170 (293)
T d1p22a2 94 HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEF 170 (293)
T ss_dssp CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC-CEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCE
T ss_pred cccccccccccccceeecccccceeEeecccccc-ccccccccccccccccceecc--cccccccCCCceeeecCCCCcE
Confidence 6666677777788899999999999999887653 233445677888888887775 4678899999999999999999
Q ss_pred EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEc
Q 024185 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 248 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~ 248 (271)
+..+..+... +..+.+ ++.++++++.||.|++||+++.+.+....+|...+.. +++++.+|++++ |.|++||
T Consensus 171 ~~~~~~~~~~--v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd 244 (293)
T d1p22a2 171 VRTLNGHKRG--IACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWD 244 (293)
T ss_dssp EEEEECCSSC--EEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEE
T ss_pred EEEEcccccc--cccccC--CCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEE
Confidence 9988877655 655555 5678999999999999999999999999988887765 566788999887 8899999
Q ss_pred CCCCC
Q 024185 249 PNPSS 253 (271)
Q Consensus 249 ~~~~~ 253 (271)
+.+..
T Consensus 245 ~~~~~ 249 (293)
T d1p22a2 245 LVAAL 249 (293)
T ss_dssp HHHHT
T ss_pred CCCCc
Confidence 86644
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=6e-25 Score=172.40 Aligned_cols=237 Identities=13% Similarity=0.077 Sum_probs=169.7
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.|+.+..|+.+.+|+...+....... ...+|.+.|.+++|+|++... +++|+.||.|++|+...+......
T Consensus 21 p~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~-~~~~h~~~V~~v~f~~~~~~~----l~sg~~d~~v~~w~~~~~~~~~~~ 95 (342)
T d1yfqa_ 21 PSKSLLLITSWDGSLTVYKFDIQAKNVDLL-QSLRYKHPLLCCNFIDNTDLQ----IYVGTVQGEILKVDLIGSPSFQAL 95 (342)
T ss_dssp GGGTEEEEEETTSEEEEEEEETTTTEEEEE-EEEECSSCEEEEEEEESSSEE----EEEEETTSCEEEECSSSSSSEEEC
T ss_pred CCCCEEEEEECCCeEEEEEccCCCcceEEE-EecCCCCCEEEEEEeCCCCCE----EEEcccccceeeeecccccccccc
Confidence 666677777789999999886654333322 234689999999999876532 779999999999999888776666
Q ss_pred ecCC---cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCC--ccceEEEEEcCCCcEEEEEecCCeEEEE
Q 024185 89 RLRG---RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD--TAEVCDIKFSNDGKSMLLTTTNNNIYVL 163 (271)
Q Consensus 89 ~~~~---~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~~~ 163 (271)
..+. .....+.++...+++++.++.+++||++..............+ ........+.+++..+++++.|+.+++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 175 (342)
T d1yfqa_ 96 TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF 175 (342)
T ss_dssp BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEE
T ss_pred cccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEE
Confidence 5443 2335667788899999999999999987655422222222222 2334556677788888888889999999
Q ss_pred ECCCCeEEEE-----------------------------------eec------------------------CCCCCcee
Q 024185 164 DAYGGEKRCG-----------------------------------FSL------------------------EPSPNTNT 184 (271)
Q Consensus 164 d~~~~~~~~~-----------------------------------~~~------------------------~~~~~~v~ 184 (271)
|++..+.... ... ......+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 255 (342)
T d1yfqa_ 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN 255 (342)
T ss_dssp ESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEE
T ss_pred ecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccce
Confidence 8764321000 000 00012467
Q ss_pred eEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 185 EATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 185 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
+++|+|++++|++|+.||.|++||+++++.+..+..+. .+..++|+|+++++++++ +.+++|....
T Consensus 256 ~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~ 323 (342)
T d1yfqa_ 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTFKTNAAID 323 (342)
T ss_dssp EEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred eEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEEEcCCcEEEeeeeC
Confidence 89999999999999999999999999999999886433 355688899999998876 6677886543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=3.7e-25 Score=170.87 Aligned_cols=202 Identities=9% Similarity=0.083 Sum_probs=145.3
Q ss_pred EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecCCe
Q 024185 36 MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEAGA 113 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~ 113 (271)
..++.+++|.+.|.+++|+| |++|+.||+|++||+.++. ..| .+.++++++++ .+++++.|++
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~---------l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~-~~~s~s~D~~ 68 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP---------LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ-EYSSISWDDT 68 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT---------TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTT-CCEEEETTTE
T ss_pred ceeEEECCCCCceEEEEECc---------EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCC-eEEEEeeccc
Confidence 45677999999999999986 5699999999999987643 233 34556766544 4677777888
Q ss_pred EEEEeCCCCCCCc--ce-----------------EEEecCCc--------cceEEEEEcCCCcEEEEEecCC-eEEEEEC
Q 024185 114 IKLFDSRSYDKGP--FD-----------------TFLVGGDT--------AEVCDIKFSNDGKSMLLTTTNN-NIYVLDA 165 (271)
Q Consensus 114 i~i~d~~~~~~~~--~~-----------------~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~d~-~i~~~d~ 165 (271)
+++|+....+... .. ........ ......+++|++..+++++.++ .+++|++
T Consensus 69 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~ 148 (287)
T d1pgua2 69 LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL 148 (287)
T ss_dssp EEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEET
T ss_pred cccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeec
Confidence 8888764322100 00 00000000 1112345677788888888765 6999999
Q ss_pred CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE-EecCCcceeEEEEEecC----------C
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA-CWNGNIGVVACLKWAPR----------R 234 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~----------~ 234 (271)
...+....+... ....+.+++|+|++++|++|+.||.|++||+.+++... .+.+|...|.+++|+|+ +
T Consensus 149 ~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~ 227 (287)
T d1pgua2 149 SDLEVSFDLKTP-LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 227 (287)
T ss_dssp TEEEEEEECSSC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSC
T ss_pred cccceeeeeeec-cCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCC
Confidence 876655554432 22349999999999999999999999999999988765 46789999999999875 4
Q ss_pred cEEEEeC--CeEEEEcCCCCC
Q 024185 235 AMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 235 ~~l~~~~--~~v~iw~~~~~~ 253 (271)
.++++|+ +.|++||+++..
T Consensus 228 ~~l~sgs~D~~i~iw~~~~~~ 248 (287)
T d1pgua2 228 DLVATGSLDTNIFIYSVKRPM 248 (287)
T ss_dssp CEEEEEETTSCEEEEESSCTT
T ss_pred CeeEeecCCCeEEEEECCCCC
Confidence 6889887 889999997643
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=8.1e-24 Score=172.57 Aligned_cols=230 Identities=8% Similarity=0.017 Sum_probs=161.2
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE--ecCC---
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL--RLRG--- 92 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~--- 92 (271)
..++.+.+++..++ ..+..+..+. .+..++|||||++ +++++.|+++++||+.+++..... +...
T Consensus 39 ~~dg~v~vwD~~t~----~~~~~l~~g~-~~~~vafSPDGk~-----l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~ 108 (426)
T d1hzua2 39 RDAGQIALVDGDSK----KIVKVIDTGY-AVHISRMSASGRY-----LLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR 108 (426)
T ss_dssp TTTTEEEEEETTTC----SEEEEEECCS-SEEEEEECTTSCE-----EEEEETTSEEEEEETTSSSCEEEEEEECCSEEE
T ss_pred cCCCEEEEEECCCC----cEEEEEeCCC-CeeEEEECCCCCE-----EEEEeCCCCEEEEEccCCceeEEEEEeCCCCCc
Confidence 45899999998887 4445566664 4788999999999 778899999999999988754433 3221
Q ss_pred --cceEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcc------------------eE----------------------
Q 024185 93 --RPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPF------------------DT---------------------- 129 (271)
Q Consensus 93 --~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~------------------~~---------------------- 129 (271)
+..++|+|||++++++ ..++.+.+||..+++.... ..
T Consensus 109 ~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~ 188 (426)
T d1hzua2 109 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL 188 (426)
T ss_dssp EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred ceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 2236678899987655 5789999999887543000 00
Q ss_pred -----------EEecCCccceEEEEEcCCCcEEEEEec-CCeEEEEECCCCeEEEE------------------------
Q 024185 130 -----------FLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCG------------------------ 173 (271)
Q Consensus 130 -----------~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~------------------------ 173 (271)
....++...+..++|+|++++++++.. +..+.+++..+++.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (426)
T d1hzua2 189 LVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVW 268 (426)
T ss_dssp EEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEE
T ss_pred EEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceE
Confidence 000012234567899999988877654 55677777665544332
Q ss_pred ------------------------------eecCCCCCceeeEEECCCCCEEEE-------ecCCCcEEEEEcCCceeEE
Q 024185 174 ------------------------------FSLEPSPNTNTEATFTPDGQYVVS-------GSGDGTLHAWNINTRNEVA 216 (271)
Q Consensus 174 ------------------------------~~~~~~~~~v~~~~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~ 216 (271)
+.+|.. .+..++|+||++++++ ++.+++|++||+++++...
T Consensus 269 ~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~--~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~ 346 (426)
T d1hzua2 269 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY 346 (426)
T ss_dssp EEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSS--CCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred EeccCCCceEEEeeccccccccccceEeEEEecCCC--ceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCe
Confidence 222222 3777999999999995 4557899999999988766
Q ss_pred Ee---------cCCcceeEEEEEecCCcEEE-Ee----C--CeEEEEcCCCCCCCcCCC
Q 024185 217 CW---------NGNIGVVACLKWAPRRAMFV-AA----S--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 217 ~~---------~~~~~~v~~~~~s~~~~~l~-~~----~--~~v~iw~~~~~~~~~~~~ 259 (271)
++ ..|...|.+++|||||++++ ++ + +.|+|||.++.+......
T Consensus 347 ~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~ 405 (426)
T d1hzua2 347 QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 405 (426)
T ss_dssp EEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC
T ss_pred EEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC
Confidence 54 23455689999999999664 32 1 669999999988655443
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5.7e-23 Score=157.79 Aligned_cols=203 Identities=16% Similarity=0.158 Sum_probs=157.7
Q ss_pred EEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEE
Q 024185 38 IEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLF 117 (271)
Q Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 117 (271)
++....|...|.|+ ++++++ |++|+.||+|++||++++++++++.+|...+.++++++++|++|+.|+.|++|
T Consensus 8 i~~~~~~~~~V~c~--~~d~~~-----l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 8 IHCRSETSKGVYCL--QYDDQK-----IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80 (293)
T ss_dssp EECCCSSCCCEEEE--ECCSSE-----EEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEE
T ss_pred EeccCCCCCCEEEE--EEcCCE-----EEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeeccccccccccc
Confidence 34466777788875 567888 89999999999999999999999999987776777789999999999999999
Q ss_pred eCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEE---EeecCCCCCceeeEEECCCCCE
Q 024185 118 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC---GFSLEPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 118 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~ 194 (271)
++..+.. ......+.. ....+.+....++++..++.+.+||..+..... .+..+. ..+....+. ...
T Consensus 81 ~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~--~~~ 150 (293)
T d1p22a2 81 DVNTGEM----LNTLIHHCE--AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR--AAVNVVDFD--DKY 150 (293)
T ss_dssp ESSSCCE----EEEECCCCS--CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS--SCEEEEEEE--TTE
T ss_pred ccccccc----ccccccccc--ccccccccccceeecccccceeEeeccccccccccccccccc--cccccceec--ccc
Confidence 9998774 333333322 333455666789999999999999998765332 233333 336555554 457
Q ss_pred EEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 195 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+++++.|+.+++||+++++.+..+.++...+..+.++ +.++++++ +.|++||+++.+......
T Consensus 151 ~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 215 (293)
T d1p22a2 151 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE 215 (293)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred cccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeec
Confidence 8899999999999999999999999998888887775 55777776 889999999887665443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.91 E-value=1.4e-21 Score=151.21 Aligned_cols=228 Identities=14% Similarity=0.090 Sum_probs=169.6
Q ss_pred eecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cce
Q 024185 17 ARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPT 95 (271)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~ 95 (271)
...++.+..++..++ ..++.+... .....++++|+|+++ +++++.++.|++||+.+++.+..+..+. ...
T Consensus 8 ~~~~~~v~v~D~~t~----~~~~~i~~g-~~p~~va~spdG~~l----~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~ 78 (301)
T d1l0qa2 8 NSESDNISVIDVTSN----KVTATIPVG-SNPMGAVISPDGTKV----YVANAHSNDVSIIDTATNNVIATVPAGSSPQG 78 (301)
T ss_dssp ETTTTEEEEEETTTT----EEEEEEECS-SSEEEEEECTTSSEE----EEEEGGGTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred ECCCCEEEEEECCCC----eEEEEEECC-CCceEEEEeCCCCEE----EEEECCCCEEEEEECCCCceeeeeeccccccc
Confidence 346788999998777 444445544 345679999999984 3577889999999999999999988765 455
Q ss_pred EEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEE-ecCCeEEEEECCCCeEEEE
Q 024185 96 VAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCG 173 (271)
Q Consensus 96 ~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~ 173 (271)
++++++++.++++ ..++.+.+|+..+++. ...+. +.....++.|+|+++.++.+ ..++.+.+|+..+++....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (301)
T d1l0qa2 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTV----AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT 153 (301)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccccccccccccccceeeeccccccee----eeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeee
Confidence 9999999866654 5667899999988764 33333 34567889999999887654 4578899999887765554
Q ss_pred eecCCC---------------------------------------CCceeeEEECCCCCEEEEec---CCCcEEEEEcCC
Q 024185 174 FSLEPS---------------------------------------PNTNTEATFTPDGQYVVSGS---GDGTLHAWNINT 211 (271)
Q Consensus 174 ~~~~~~---------------------------------------~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~ 211 (271)
+..+.. ......++++++++.++.++ .++.|++||+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t 233 (301)
T d1l0qa2 154 VSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233 (301)
T ss_dssp EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred cccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCC
Confidence 432211 01245577888888776554 346899999999
Q ss_pred ceeEEEecCCcceeEEEEEecCCcEE-EEeC--CeEEEEcCCCCCCCcCCC
Q 024185 212 RNEVACWNGNIGVVACLKWAPRRAMF-VAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
++.+..+..+ ..+.+++|+|||++| ++++ +.|++||++++++.....
T Consensus 234 ~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 234 NKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 9999888754 457999999999976 4554 789999999988765543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=4.3e-22 Score=156.30 Aligned_cols=229 Identities=8% Similarity=0.065 Sum_probs=171.6
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcc--cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFA--TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
.++.+..++.+..++...+ ..+..+. .+...+..++++|||+++ +++++.++.|.+||+++++.+..+..
T Consensus 3 ~~vt~~~d~~v~v~D~~s~----~~~~~i~~~~~~~~~~~i~~spDg~~l----~v~~~~~~~v~v~D~~t~~~~~~~~~ 74 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKM----AVDKVITIADAGPTPMVPMVAPGGRIA----YATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEEETTTEEEEEETTTT----EEEEEEECTTCTTCCCCEEECTTSSEE----EEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcCCCEEEEEECCCC----eEEEEEECCCCCCCccEEEECCCCCEE----EEEECCCCeEEEEECCCCcEEEEEec
Confidence 4556677899999998877 3333343 334567789999999984 34778899999999999999888765
Q ss_pred CC-------cceEEEcCCCCEEEEEe------------cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEE
Q 024185 91 RG-------RPTVAFDQQGLVFAVAM------------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM 151 (271)
Q Consensus 91 ~~-------~~~~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 151 (271)
+. ...++|+|++++++++. .+..+.+||..+++. ...+. +...+..++|+|||+++
T Consensus 75 ~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~-~~~~~~~~~~s~dg~~l 149 (337)
T d1pbyb_ 75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR----RKAFE-APRQITMLAWARDGSKL 149 (337)
T ss_dssp CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE----EEEEE-CCSSCCCEEECTTSSCE
T ss_pred CCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE----EEecc-ccCCceEEEEcCCCCEE
Confidence 42 34599999999998875 356788999988764 33333 34568889999999999
Q ss_pred EEEecCCeEEEEECCCCeEEEEeecCCC----------------------------------------------------
Q 024185 152 LLTTTNNNIYVLDAYGGEKRCGFSLEPS---------------------------------------------------- 179 (271)
Q Consensus 152 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~---------------------------------------------------- 179 (271)
++++.+ +.+||..+++....+..+..
T Consensus 150 ~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (337)
T d1pbyb_ 150 YGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE 227 (337)
T ss_dssp EEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred EEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcC
Confidence 988754 67788877765544322110
Q ss_pred ------------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEE
Q 024185 180 ------------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLS 245 (271)
Q Consensus 180 ------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~ 245 (271)
......+.++|++.+++.+ ++.+++||+.+++.+..+. +...+.+++|+|||++|++++ ++|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~ 304 (337)
T d1pbyb_ 228 TGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLA 304 (337)
T ss_dssp TCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEE
T ss_pred CCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 0123345667777777655 4789999999999999886 456789999999999999887 8899
Q ss_pred EEcCCCCCCCcCCC
Q 024185 246 FWIPNPSSNSTDES 259 (271)
Q Consensus 246 iw~~~~~~~~~~~~ 259 (271)
+||.++.+...+..
T Consensus 305 v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 305 AYDAETLEKKGQVD 318 (337)
T ss_dssp EEETTTCCEEEEEE
T ss_pred EEECCCCcEEEEEE
Confidence 99999988766554
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=2.4e-22 Score=163.92 Aligned_cols=193 Identities=9% Similarity=-0.066 Sum_probs=149.9
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEE-ecCCccceEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL-VGGDTAEVCDI 142 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~ 142 (271)
+++.+.||+|.+||.++++.+..++.+. +..++|+|||+++++++.|+.+++||+.+++........ ..+|.+.+.+.
T Consensus 35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~ 114 (432)
T d1qksa2 35 SVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSK 114 (432)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEec
Confidence 4688999999999999999999998764 566999999999999999999999999887652222222 23455666777
Q ss_pred EEcCCCcEE-EEEecCCeEEEEECCCCeEEEEeecCCCC---------CceeeEEECCCCCEEE-EecCCCcEEEEEcCC
Q 024185 143 KFSNDGKSM-LLTTTNNNIYVLDAYGGEKRCGFSLEPSP---------NTNTEATFTPDGQYVV-SGSGDGTLHAWNINT 211 (271)
Q Consensus 143 ~~s~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~ 211 (271)
.|+|||++| ++++.++.+++||..+++.+..+..+... .....+.++|+|+.++ +...++.|.+||..+
T Consensus 115 ~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~ 194 (432)
T d1qksa2 115 MEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 194 (432)
T ss_dssp STTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC
T ss_pred ccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccC
Confidence 889999986 56777999999999999988876643221 2355678999998764 566689999999988
Q ss_pred ceeEEEec-CCcceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCCCcC
Q 024185 212 RNEVACWN-GNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 212 ~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~~~~ 257 (271)
++...... .+...+..++|+|||+++++++ +.+.++|..+++....
T Consensus 195 ~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~ 244 (432)
T d1qksa2 195 LNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI 244 (432)
T ss_dssp SSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred CCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEE
Confidence 77554332 2445678999999999888776 6799999988765443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.88 E-value=9.9e-22 Score=160.07 Aligned_cols=192 Identities=9% Similarity=0.028 Sum_probs=140.9
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEE-EecCCccceEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF-LVGGDTAEVCDI 142 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~ 142 (271)
+++.+.||+|++||+.+++.+.+++.+. +..++|+|||+++++++.|+++++||+.+++....... ...+|.+.+.++
T Consensus 35 ~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~ 114 (426)
T d1hzua2 35 SVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK 114 (426)
T ss_dssp EEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEee
Confidence 4678899999999999999999998764 55599999999999999999999999998875111111 123456667788
Q ss_pred EEcCCCcEEEEE-ecCCeEEEEECCCCeEEEEeecCCC------------------------------------------
Q 024185 143 KFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPS------------------------------------------ 179 (271)
Q Consensus 143 ~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~------------------------------------------ 179 (271)
+|+|||++++++ ..++.+++||..+++....+..+..
T Consensus 115 ~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~ 194 (426)
T d1hzua2 115 FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 194 (426)
T ss_dssp STTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSS
T ss_pred eecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecc
Confidence 889999987655 4689999999887765443321100
Q ss_pred -----------CCceeeEEECCCCCEEEEecC-CCcEEEEEcCCce----------------------------------
Q 024185 180 -----------PNTNTEATFTPDGQYVVSGSG-DGTLHAWNINTRN---------------------------------- 213 (271)
Q Consensus 180 -----------~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~---------------------------------- 213 (271)
...+..+.|+|++++++++.. +..+.+++..+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (426)
T d1hzua2 195 IDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG 274 (426)
T ss_dssp SSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTT
T ss_pred ccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCC
Confidence 012446788999988776643 3455566554433
Q ss_pred --------------------eEEEecCCcceeEEEEEecCCcEEEEe-------C--CeEEEEcCCCCCCCc
Q 024185 214 --------------------EVACWNGNIGVVACLKWAPRRAMFVAA-------S--SVLSFWIPNPSSNST 256 (271)
Q Consensus 214 --------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~-------~--~~v~iw~~~~~~~~~ 256 (271)
....+.+|...+..++|+||+++|++. + ++|++||+++++...
T Consensus 275 d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~ 346 (426)
T d1hzua2 275 DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY 346 (426)
T ss_dssp TCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred CceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCe
Confidence 334455677778999999999999952 2 789999999887653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.86 E-value=3.9e-20 Score=145.48 Aligned_cols=234 Identities=11% Similarity=0.073 Sum_probs=158.3
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEcc-cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFA-TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
.+.++.+..++.+..++...+ ..++.+. ++......++++|||+++ ++++..++.|++||+.+++.+..+.
T Consensus 8 ~~~l~~~~~~~~v~v~D~~t~----~~~~t~~~~~~~~p~~l~~spDG~~l----~v~~~~~~~v~~~d~~t~~~~~~~~ 79 (346)
T d1jmxb_ 8 HEYMIVTNYPNNLHVVDVASD----TVYKSCVMPDKFGPGTAMMAPDNRTA----YVLNNHYGDIYGIDLDTCKNTFHAN 79 (346)
T ss_dssp CEEEEEEETTTEEEEEETTTT----EEEEEEECSSCCSSCEEEECTTSSEE----EEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CcEEEEEcCCCEEEEEECCCC----CEEEEEEcCCCCCcceEEECCCCCEE----EEEECCCCcEEEEeCccCeeeeeec
Confidence 355666777899999999877 4445454 344556789999999984 3577889999999999999888775
Q ss_pred cCC--------cceEEEcCCCCEEEEEe------------cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc
Q 024185 90 LRG--------RPTVAFDQQGLVFAVAM------------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK 149 (271)
Q Consensus 90 ~~~--------~~~~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 149 (271)
... ...++|+|||+++++++ .++.+.+|+..+++. ............+..+.++++++
T Consensus 80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T d1jmxb_ 80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE--AKPVRTFPMPRQVYLMRAADDGS 157 (346)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG--BCCSEEEECCSSCCCEEECTTSC
T ss_pred ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee--eeEEEeeeccCceEEEEecCCCE
Confidence 432 34599999999988775 367788998876553 11111111122344444555554
Q ss_pred EEEEEecCCeEEEEECCCCeEEEEeecCC---------------------------------------------------
Q 024185 150 SMLLTTTNNNIYVLDAYGGEKRCGFSLEP--------------------------------------------------- 178 (271)
Q Consensus 150 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--------------------------------------------------- 178 (271)
.++++ +.+.+|++.+++.+..+..+.
T Consensus 158 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (346)
T d1jmxb_ 158 LYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS 234 (346)
T ss_dssp EEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred EEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEE
Confidence 33321 234445544443333221110
Q ss_pred ---------------CCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--
Q 024185 179 ---------------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-- 241 (271)
Q Consensus 179 ---------------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 241 (271)
....+..+.++|++.+++.... +.+.+||..+++.+..+. +...+.+++|+|||++|++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d 312 (346)
T d1jmxb_ 235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTF 312 (346)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBS
T ss_pred EECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCC
Confidence 0112555677777777766554 579999999999988876 445689999999999999987
Q ss_pred CeEEEEcCCCCCCCcCCC
Q 024185 242 SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 242 ~~v~iw~~~~~~~~~~~~ 259 (271)
+.|++||.++++.+....
T Consensus 313 ~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 313 NDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp SEEEEEETTTTEEEEEEE
T ss_pred CcEEEEECccCCEEEEEE
Confidence 889999999988776554
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.83 E-value=6.6e-19 Score=137.84 Aligned_cols=185 Identities=12% Similarity=0.047 Sum_probs=142.2
Q ss_pred hhhhccCceEEEEEecCcceeEEEecC----CcceEEEcCCCCEEE-EEecCCeEEEEeCCCCCCCcceEEEecCCc---
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLR----GRPTVAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDTFLVGGDT--- 136 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--- 136 (271)
+++++.|++|++||+++++.+..+..+ .+..++|+|||++++ +++.++.|.+||+.+++. ...+..+.
T Consensus 4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~----~~~~~~~~~~~ 79 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET----LGRIDLSTPEE 79 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE----EEEEECCBTTE
T ss_pred EEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE----EEEEecCCCcc
Confidence 678999999999999999999988653 345699999999875 556789999999999875 33333332
Q ss_pred --cceEEEEEcCCCcEEEEEec------------CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC
Q 024185 137 --AEVCDIKFSNDGKSMLLTTT------------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 202 (271)
Q Consensus 137 --~~v~~~~~s~~~~~l~~~~~------------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 202 (271)
..+..++|+|++++++++.. +..+.+||..+++....+..... +..++|+|||+++++++.+
T Consensus 80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~- 155 (337)
T d1pbyb_ 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ---ITMLAWARDGSKLYGLGRD- 155 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS---CCCEEECTTSSCEEEESSS-
T ss_pred cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCC---ceEEEEcCCCCEEEEEcCC-
Confidence 33557899999999987763 57899999999998888775543 6679999999999988754
Q ss_pred cEEEEEcCCceeEEEec---------------------------------------------------------------
Q 024185 203 TLHAWNINTRNEVACWN--------------------------------------------------------------- 219 (271)
Q Consensus 203 ~i~iwd~~~~~~~~~~~--------------------------------------------------------------- 219 (271)
+.+||..+++....+.
T Consensus 156 -~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (337)
T d1pbyb_ 156 -LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR 234 (337)
T ss_dssp -EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred -cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEE
Confidence 6778877665443321
Q ss_pred ---CCcceeEEEEEecCCcEEEEeCCeEEEEcCCCCCCCcCC
Q 024185 220 ---GNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 220 ---~~~~~v~~~~~s~~~~~l~~~~~~v~iw~~~~~~~~~~~ 258 (271)
.+...+..+.++|++.+++.+++.+++||+.+++.....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 276 (337)
T d1pbyb_ 235 EVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV 276 (337)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEE
T ss_pred EecCCCcceEEEEecccceEEEEccccEEEEECCCCcEEEEE
Confidence 122334566778888888888899999999998766544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.83 E-value=3.5e-18 Score=131.73 Aligned_cols=182 Identities=13% Similarity=0.133 Sum_probs=146.1
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEE-EEecCCeEEEEeCCCCCCCcceEEEecCCccceEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI 142 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 142 (271)
+++++.|++|.+||+++++.+++++... ...++|+|||++|+ +++.++.|++||+.+++. ...+..+. .+..+
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~----~~~~~~~~-~~~~~ 79 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV----IATVPAGS-SPQGV 79 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE----EEEEECSS-SEEEE
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce----eeeeeccc-ccccc
Confidence 4577889999999999999999998654 45599999999875 556789999999998775 44555553 57889
Q ss_pred EEcCCCcEEEEE-ecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEE-ecCCCcEEEEEcCCceeEEEecC
Q 024185 143 KFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS-GSGDGTLHAWNINTRNEVACWNG 220 (271)
Q Consensus 143 ~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~ 220 (271)
+|+++++.++++ ..++.+.+|+..+++....+..+.. ...+.++|+++.++. +..++.+.+|+..+++.+..+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (301)
T d1l0qa2 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS---PLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156 (301)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS---EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccccccccccccccccceeeecccccceeeeecccccc---ceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc
Confidence 999999876655 4578999999999998888775544 677999999998764 55578899999999999988875
Q ss_pred CcceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCCC
Q 024185 221 NIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNS 255 (271)
Q Consensus 221 ~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~~ 255 (271)
+. .+..+.++|++..+++++ +.+.+|+....+..
T Consensus 157 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (301)
T d1l0qa2 157 GR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI 193 (301)
T ss_dssp CS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CC-CceEEEeeccccceeeecccccccccccccceeee
Confidence 54 468899999999887775 56888887766543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=4.1e-18 Score=138.61 Aligned_cols=220 Identities=11% Similarity=0.065 Sum_probs=152.1
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee--EEEecCC---
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ--GILRLRG--- 92 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~--- 92 (271)
..++.+.+++...+ ..++.+..+. .+..++|||||++ +++++.|+.+++||+.+++.. ..++...
T Consensus 39 ~d~g~v~v~D~~t~----~v~~~~~~g~-~~~~v~fSpDG~~-----l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~ 108 (432)
T d1qksa2 39 RDAGQIALIDGSTY----EIKTVLDTGY-AVHISRLSASGRY-----LFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 108 (432)
T ss_dssp TTTTEEEEEETTTC----CEEEEEECSS-CEEEEEECTTSCE-----EEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred cCCCEEEEEECCCC----cEEEEEeCCC-CeeEEEECCCCCE-----EEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC
Confidence 45789999998887 4445566654 5888999999999 778899999999999887643 3333221
Q ss_pred --cceEEEcCCCCEE-EEEecCCeEEEEeCCCCCCCcceEEEecC-----------CccceEEEEEcCCCcEEEE-EecC
Q 024185 93 --RPTVAFDQQGLVF-AVAMEAGAIKLFDSRSYDKGPFDTFLVGG-----------DTAEVCDIKFSNDGKSMLL-TTTN 157 (271)
Q Consensus 93 --~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~-~~~d 157 (271)
+...+|+|||++| ++++.++.+++||..+++. ...+.. +......+.++|+|..++. ...+
T Consensus 109 ~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~ 184 (432)
T d1qksa2 109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP----KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 184 (432)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE----EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc----eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC
Confidence 1224567899986 5677899999999998875 222222 3345677899999987654 5568
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CCcEEEEEcCCceeEEEecC-----CcceeEEEEEe
Q 024185 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINTRNEVACWNG-----NIGVVACLKWA 231 (271)
Q Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s 231 (271)
+.+.+||..+.+.......+.. .....+.|+|||+++++++. ++.+.++|..+++....+.. |........+.
T Consensus 185 ~~i~~~d~~~~~~~~~~~i~~g-~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 263 (432)
T d1qksa2 185 GKILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP 263 (432)
T ss_dssp TEEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEET
T ss_pred CeEEEEEccCCCcceEEEEccc-CccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecC
Confidence 9999999988775554332322 23778999999998877765 56899999998887766532 22223334444
Q ss_pred cCCcEEEEeC---CeEEEEcCCCC
Q 024185 232 PRRAMFVAAS---SVLSFWIPNPS 252 (271)
Q Consensus 232 ~~~~~l~~~~---~~v~iw~~~~~ 252 (271)
+.+...++.. +.+.+|+....
T Consensus 264 ~~g~~~~~~~lg~~~v~~~~~~~~ 287 (432)
T d1qksa2 264 TFGPVWATSHMGDDSVALIGTDPE 287 (432)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTT
T ss_pred CCCceecccccCCceEEecccccc
Confidence 4444444443 45777765543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.81 E-value=5e-18 Score=135.15 Aligned_cols=215 Identities=10% Similarity=0.032 Sum_probs=147.3
Q ss_pred ccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEe----------cC
Q 024185 42 ATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAM----------EA 111 (271)
Q Consensus 42 ~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d 111 (271)
..+.+.+...+++|+++.+++..-...+.++.+.+||.++++.+..+..+....++|+|||++|++++ .+
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~ 96 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRT 96 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccc
Confidence 45677888899999999853311112344567999999999999999888777899999999999875 35
Q ss_pred CeEEEEeCCCCCCCcceEEEe-----------------------------c----------------CCccceEEEEEcC
Q 024185 112 GAIKLFDSRSYDKGPFDTFLV-----------------------------G----------------GDTAEVCDIKFSN 146 (271)
Q Consensus 112 ~~i~i~d~~~~~~~~~~~~~~-----------------------------~----------------~~~~~v~~~~~s~ 146 (271)
+.|.+||..+++. ...... . .+.....++.++|
T Consensus 97 ~~v~v~D~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 174 (373)
T d2madh_ 97 DYVEVFDPVTFLP--IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHP 174 (373)
T ss_pred eEEEEEECCCCcE--EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEec
Confidence 7899999988664 100000 0 0112244667888
Q ss_pred CCcEE-EEEecCCeEEEEECCCCeEEEEeecCCC----------------------------------------------
Q 024185 147 DGKSM-LLTTTNNNIYVLDAYGGEKRCGFSLEPS---------------------------------------------- 179 (271)
Q Consensus 147 ~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~---------------------------------------------- 179 (271)
+++.+ ++.+.|+.+.+||...++..........
T Consensus 175 ~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 254 (373)
T d2madh_ 175 GAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA 254 (373)
T ss_pred CCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeecc
Confidence 87765 5677899999999876544332211000
Q ss_pred -----------CCceeeEEECCCCCEEE----------EecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcE--
Q 024185 180 -----------PNTNTEATFTPDGQYVV----------SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAM-- 236 (271)
Q Consensus 180 -----------~~~v~~~~~~~~~~~l~----------~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-- 236 (271)
+.....++++|++..++ ....++.+.+||..+++.+..+. +...+.+++|+|||+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l 333 (373)
T d2madh_ 255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDL 333 (373)
T ss_pred ccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEE
Confidence 00112245555655443 34456678999999999988876 5566899999999984
Q ss_pred EEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 237 FVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 237 l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+++++ +.|++||+.+++......
T Consensus 334 ~vt~~~d~~v~v~D~~tg~~~~~~~ 358 (373)
T d2madh_ 334 YALSAGTEVLHIYDAGAGDQDQSTV 358 (373)
T ss_pred EEEeCCCCeEEEEECCCCCEEEEEC
Confidence 34555 789999999999876654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=7.7e-18 Score=131.70 Aligned_cols=235 Identities=10% Similarity=0.074 Sum_probs=151.5
Q ss_pred eeEEeee-cceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE--
Q 024185 12 QALLFAR-QNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL-- 88 (271)
Q Consensus 12 ~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-- 88 (271)
+.++++. .++.+..++..... ....++.+ .+.+.+..++|+|||+++ ++++..|+.|++|++........+
T Consensus 4 ~~v~v~~~~~~~I~v~~~~~~~-~l~~~~~~-~~~~~v~~la~spDG~~L----~v~~~~d~~i~~~~i~~~~~~~~~~~ 77 (333)
T d1ri6a_ 4 QTVYIASPESQQIHVWNLNHEG-ALTLTQVV-DVPGQVQPMVVSPDKRYL----YVGVRPEFRVLAYRIAPDDGALTFAA 77 (333)
T ss_dssp EEEEEEEGGGTEEEEEEECTTS-CEEEEEEE-ECSSCCCCEEECTTSSEE----EEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred eEEEEECCCCCcEEEEEEcCCC-CeEEEEEE-cCCCCEeEEEEeCCCCEE----EEEECCCCeEEEEEEeCCCCcEEEee
Confidence 4454554 57777787764321 11223333 456778899999999984 246677999999999866533332
Q ss_pred --ec-CCcceEEEcCCCCEEEEEec-CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CCeEEEE
Q 024185 89 --RL-RGRPTVAFDQQGLVFAVAME-AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVL 163 (271)
Q Consensus 89 --~~-~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~ 163 (271)
.. .....++|+|||++|++++. ++.+.+|+...... ........+...+.++.++|++++++.++. +..+.+|
T Consensus 78 ~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~ 155 (333)
T d1ri6a_ 78 ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP--VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLF 155 (333)
T ss_dssp EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE--EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred ecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccc--eecccccCCCccceEEEeeecceeeeccccccceeeEE
Confidence 22 23455999999999998875 66899998876543 223344456677888899999988877764 5567887
Q ss_pred ECCCCeEEEE----------------eec-----------------------------------------CCCCCceeeE
Q 024185 164 DAYGGEKRCG----------------FSL-----------------------------------------EPSPNTNTEA 186 (271)
Q Consensus 164 d~~~~~~~~~----------------~~~-----------------------------------------~~~~~~v~~~ 186 (271)
+......... +.. .........+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (333)
T d1ri6a_ 156 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 235 (333)
T ss_dssp EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred EeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeE
Confidence 7654211000 000 0000123456
Q ss_pred EECCCCCEEEEe-cCCCcEEEEEcCCceeEEEe---cCCcceeEEEEEecCCcEEEEeC---CeEEEEcC--CCCCC
Q 024185 187 TFTPDGQYVVSG-SGDGTLHAWNINTRNEVACW---NGNIGVVACLKWAPRRAMFVAAS---SVLSFWIP--NPSSN 254 (271)
Q Consensus 187 ~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~--~~~~~ 254 (271)
++++++++++.. ..++.+.+|++......... ......+.+++|+|||++|++++ +.|++|++ +++++
T Consensus 236 ~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 236 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred EEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence 788888876654 44678899988765433322 22344577899999999887765 77999954 55544
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=1.5e-17 Score=131.39 Aligned_cols=231 Identities=8% Similarity=0.031 Sum_probs=154.0
Q ss_pred ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhh-----hhhhccCceEEEEEecCcceeEEEecCC--
Q 024185 20 NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALC-----LVLLTTALEYGIFVLMLASFQGILRLRG-- 92 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~-----l~s~~~dg~i~iwd~~~~~~~~~~~~~~-- 92 (271)
...+..++...+ ..+..+..+. ...++|||||+.+++.. ...+..|+.|++||..+++.+..+..+.
T Consensus 27 ~~~v~v~D~~tg----~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~ 100 (355)
T d2bbkh_ 27 VTQQFVIDGEAG----RVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 100 (355)
T ss_dssp SEEEEEEETTTT----EEEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred cCeEEEEECCCC----cEEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcc
Confidence 346778887766 3333343333 33689999999843310 1124568999999999999888775432
Q ss_pred -------cceEEEcCCCCEEEEEe--cCCeEEEEeCCCCCCCcceEEEecC-----------------------------
Q 024185 93 -------RPTVAFDQQGLVFAVAM--EAGAIKLFDSRSYDKGPFDTFLVGG----------------------------- 134 (271)
Q Consensus 93 -------~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~----------------------------- 134 (271)
...++|+|++++++++. .+..+.+|+..+++. ........
T Consensus 101 ~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~ 178 (355)
T d2bbkh_ 101 RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF--KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE 178 (355)
T ss_dssp CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE--EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSS
T ss_pred eeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE--eeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCC
Confidence 23489999999888774 456889999887653 11111000
Q ss_pred --------------CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEE--eecCC--------CCCceeeEEECC
Q 024185 135 --------------DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG--FSLEP--------SPNTNTEATFTP 190 (271)
Q Consensus 135 --------------~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~--------~~~~v~~~~~~~ 190 (271)
+...+....+++++..++.++.++.+++|++..++.... ...+. .+.....++++|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 258 (355)
T d2bbkh_ 179 GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 258 (355)
T ss_dssp SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred CeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC
Confidence 011123345566666778888899999999887654221 11111 011234488999
Q ss_pred CCCEEEEecCC----------CcEEEEEcCCceeEEEecCCcceeEEEEEecCCc--EEEEeC--CeEEEEcCCCCCCCc
Q 024185 191 DGQYVVSGSGD----------GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA--MFVAAS--SVLSFWIPNPSSNST 256 (271)
Q Consensus 191 ~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~--~~v~iw~~~~~~~~~ 256 (271)
+++.++....+ +.|.+||..+++.+..+. +...+.+++|+|||+ ++++++ +.|++||.++++.+.
T Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~ 337 (355)
T d2bbkh_ 259 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 337 (355)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEE
Confidence 99988765433 369999999999988886 345689999999997 345554 889999999998776
Q ss_pred CCC
Q 024185 257 DES 259 (271)
Q Consensus 257 ~~~ 259 (271)
...
T Consensus 338 ~i~ 340 (355)
T d2bbkh_ 338 SVN 340 (355)
T ss_dssp EEC
T ss_pred EEe
Confidence 543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.77 E-value=8.8e-18 Score=131.81 Aligned_cols=201 Identities=12% Similarity=0.026 Sum_probs=133.6
Q ss_pred eEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC---CcceEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCc
Q 024185 51 LFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR---GRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGP 126 (271)
Q Consensus 51 ~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~ 126 (271)
+++++++++ +++++.+++|.+||+++++.+.+++.+ ....++|+|||++++++ ..++.|++||+.+++.
T Consensus 2 ~a~~~~~~~-----l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~-- 74 (346)
T d1jmxb_ 2 PALKAGHEY-----MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-- 74 (346)
T ss_dssp CCCCTTCEE-----EEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE--
T ss_pred ccCCCCCcE-----EEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee--
Confidence 578999999 899999999999999999999888643 34569999999987555 5789999999998765
Q ss_pred ceEEEecCC----ccceEEEEEcCCCcEEEEEe------------cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECC
Q 024185 127 FDTFLVGGD----TAEVCDIKFSNDGKSMLLTT------------TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 190 (271)
Q Consensus 127 ~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 190 (271)
......... ...+..++|+|||+++++++ .++.+.+||..+++....+..+..+..+..+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (346)
T d1jmxb_ 75 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD 154 (346)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred eeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC
Confidence 222222111 12356789999999988765 36789999988766544433322222233345555
Q ss_pred CCCEEEEec----------------------------------------------------------------CCCcEEE
Q 024185 191 DGQYVVSGS----------------------------------------------------------------GDGTLHA 206 (271)
Q Consensus 191 ~~~~l~~~~----------------------------------------------------------------~dg~i~i 206 (271)
+++.+++++ .++.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (346)
T d1jmxb_ 155 DGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS 234 (346)
T ss_dssp TSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred CCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEE
Confidence 554433321 1112333
Q ss_pred EEcCCceeEEE-ecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCCcCC
Q 024185 207 WNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 207 wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~~~~ 258 (271)
||..++..... ...|...+..+.+++++.+++... +.+.+||..+++.....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~ 288 (346)
T d1jmxb_ 235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAA 288 (346)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEE
T ss_pred EECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEE
Confidence 44443333222 233445566778888877777766 88999999888765543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=6.4e-16 Score=120.58 Aligned_cols=186 Identities=8% Similarity=0.056 Sum_probs=131.5
Q ss_pred hhhhccCceEEEEEecCcce---eEEEecC-CcceEEEcCCCCEEEEEe-cCCeEEEEeCCCCCCCcceEEEecCCccce
Q 024185 65 LVLLTTALEYGIFVLMLASF---QGILRLR-GRPTVAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLVGGDTAEV 139 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~---~~~~~~~-~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v 139 (271)
+++++.|++|++|++++... ++.+... .+..++|+|||++|++++ .|+.|++|++............ ..+...+
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~-~~~~~~p 85 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE-SALPGSL 85 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE-EECSSCC
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee-cccCCCc
Confidence 46888999999999976543 3334433 356799999999986665 5899999999876541111111 2234557
Q ss_pred EEEEEcCCCcEEEEEec-CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CCcEEEEEcCCceeEEE
Q 024185 140 CDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINTRNEVAC 217 (271)
Q Consensus 140 ~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~ 217 (271)
..++|+|||++|++++. ++.+.+|+..................+.++.++|++++++.++. +..+.+|+.........
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence 78999999999998875 77899999887766555444344445788999999999887775 46799999876543321
Q ss_pred ------ecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCC
Q 024185 218 ------WNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNP 251 (271)
Q Consensus 218 ------~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~ 251 (271)
..........++|++++.+++... +...+|+...
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~ 208 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD 208 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecc
Confidence 122334567899999998877664 6677777644
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.72 E-value=3.3e-16 Score=124.57 Aligned_cols=211 Identities=9% Similarity=-0.057 Sum_probs=140.5
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEe----------cCCeEE
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAM----------EAGAIK 115 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~i~ 115 (271)
+.....+..++++..........+.+..+.+||..+++.+.++..+..+.++|+|||+.|++++ .++.|.
T Consensus 20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~ 99 (368)
T d1mdah_ 20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVE 99 (368)
T ss_dssp CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEE
T ss_pred CCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEE
Confidence 3444455667766422200123334456777799999999999888777899999999888764 367799
Q ss_pred EEeCCCCCCCcceEEEecCC-----ccceEEEEEcCCCcEEEEEe-cCCeEEEEECCCCeEEEEeecCCCC---------
Q 024185 116 LFDSRSYDKGPFDTFLVGGD-----TAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLEPSP--------- 180 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~--------- 180 (271)
+||..+.+. ........+ ......++|+|||+++++++ .++.+.+||+.+++....+..+...
T Consensus 100 v~D~~t~~~--~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (368)
T d1mdah_ 100 VFDPVTFLP--IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAAT 177 (368)
T ss_dssp EECTTTCCE--EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTE
T ss_pred EEECCCCcE--eeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCce
Confidence 999998875 222222211 11234689999999998876 4789999999887765544321100
Q ss_pred --------------------------------------------------------------------------------
Q 024185 181 -------------------------------------------------------------------------------- 180 (271)
Q Consensus 181 -------------------------------------------------------------------------------- 180 (271)
T Consensus 178 ~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 257 (368)
T d1mdah_ 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRK 257 (368)
T ss_dssp EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHH
T ss_pred EEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceee
Confidence
Q ss_pred ------CceeeEEECCCCCEEEEecCC---------CcEEEEEcCCceeEEEecCCcceeEEEEEecCCc-EE-EEeC--
Q 024185 181 ------NTNTEATFTPDGQYVVSGSGD---------GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MF-VAAS-- 241 (271)
Q Consensus 181 ------~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l-~~~~-- 241 (271)
.....++++|++..++....+ ..|.+||..+++.+..+. +...+.+++|+|||+ ++ +++.
T Consensus 258 ~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~ 336 (368)
T d1mdah_ 258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGT 336 (368)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTT
T ss_pred eeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCC
Confidence 001123455555554433211 248889999998888776 446788999999997 33 4444
Q ss_pred CeEEEEcCCCCCCCcCCC
Q 024185 242 SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 242 ~~v~iw~~~~~~~~~~~~ 259 (271)
+.|++||..+++.+...+
T Consensus 337 ~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 337 EVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp TEEEEEESSSCEEEEECC
T ss_pred CeEEEEECCCCCEEEEEE
Confidence 789999999998876665
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.62 E-value=2.8e-14 Score=113.21 Aligned_cols=198 Identities=9% Similarity=-0.037 Sum_probs=132.5
Q ss_pred eeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhh-----hhhhhccCceEEEEEecCcceeEEEecCC---
Q 024185 21 IILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIAL-----CLVLLTTALEYGIFVLMLASFQGILRLRG--- 92 (271)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~-----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--- 92 (271)
..+..++...+ ..+.....+... .++++|+|+.+++. .+++|+.|+.|.+||..+++.+..+..+.
T Consensus 46 ~~~~~~d~~~~----~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~ 119 (368)
T d1mdah_ 46 TENWVSCAGCG----VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEEETTTT----EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred ceEEEEeCCCC----cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccce
Confidence 45666676655 333334443333 48899999875432 13456779999999999999888876432
Q ss_pred ------cceEEEcCCCCEEEEEe-cCCeEEEEeCCCCCCCcceEEEecC-------------------------------
Q 024185 93 ------RPTVAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLVGG------------------------------- 134 (271)
Q Consensus 93 ------~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~------------------------------- 134 (271)
...++|+|||++++++. .++.+.+||+.+++. ........
T Consensus 120 ~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~ 197 (368)
T d1mdah_ 120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred ecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcE--eEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCce
Confidence 23499999999998875 568999999876542 00000000
Q ss_pred ------------Cc----------------------------------------------------cceEEEEEcCCCcE
Q 024185 135 ------------DT----------------------------------------------------AEVCDIKFSNDGKS 150 (271)
Q Consensus 135 ------------~~----------------------------------------------------~~v~~~~~s~~~~~ 150 (271)
+. .....++++|++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~ 277 (368)
T d1mdah_ 198 AAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred eeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCE
Confidence 00 11223566777666
Q ss_pred EEEEecC---------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCE--EEEecCCCcEEEEEcCCceeEEEec
Q 024185 151 MLLTTTN---------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY--VVSGSGDGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 151 l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~ 219 (271)
++....+ ..+++||..+++.+..+.... .+..++|+|||+. ++++..++.|++||..+++.+.+++
T Consensus 278 ~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred EEEEecCCCceeecCCceEEEEECCCCcEeEEecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence 6554322 358899999999888776443 2778999999973 4566778999999999999999987
Q ss_pred CCcceeEEEEE
Q 024185 220 GNIGVVACLKW 230 (271)
Q Consensus 220 ~~~~~v~~~~~ 230 (271)
.... -+.|++
T Consensus 355 ~g~~-P~~l~~ 364 (368)
T d1mdah_ 355 LDKG-PESLSV 364 (368)
T ss_dssp CCSC-CCEEEC
T ss_pred CCCC-CCEEEE
Confidence 5443 355554
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.62 E-value=2.2e-14 Score=112.79 Aligned_cols=197 Identities=11% Similarity=0.035 Sum_probs=133.9
Q ss_pred eEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEe----------cCCeEEEEeCC
Q 024185 51 LFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAM----------EAGAIKLFDSR 120 (271)
Q Consensus 51 ~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~i~i~d~~ 120 (271)
.+.+|+++.+++.....+..++.+.+||..+++.+.++..+..+.++|+|||++|++++ .++.|.+||..
T Consensus 7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~ 86 (355)
T d2bbkh_ 7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 86 (355)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC
Confidence 45688988753322233456788999999999999999888878899999999887653 46899999999
Q ss_pred CCCCCcceEEEec-CC----ccceEEEEEcCCCcEEEEEe--cCCeEEEEECCCCeEEEEeecCCCC-----CceeeEEE
Q 024185 121 SYDKGPFDTFLVG-GD----TAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSP-----NTNTEATF 188 (271)
Q Consensus 121 ~~~~~~~~~~~~~-~~----~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~-----~~v~~~~~ 188 (271)
+++. ....... .+ ......++|+|+++++++++ .+..+.+||..+++.+..+...... .....+.+
T Consensus 87 t~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (355)
T d2bbkh_ 87 TLLP--TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH 164 (355)
T ss_dssp TCCE--EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred CCCE--EEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEE
Confidence 8875 2222211 11 12235689999999988775 4678999999999988877644321 11223566
Q ss_pred CCCCCEEEEecC-CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 189 TPDGQYVVSGSG-DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 189 ~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
++|++.++.... ++.+.+++...... .+...+....+++++..++.++ +.+++|++..++.
T Consensus 165 ~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 228 (355)
T d2bbkh_ 165 CRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA 228 (355)
T ss_dssp ETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC
T ss_pred cCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE
Confidence 667666554433 34455555443221 2333455667788777777765 8899999988765
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.58 E-value=1.5e-12 Score=103.02 Aligned_cols=178 Identities=10% Similarity=0.020 Sum_probs=126.1
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--------cceEEEcCCCCEEEEEecCCeEEEE
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--------RPTVAFDQQGLVFAVAMEAGAIKLF 117 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~d~~i~i~ 117 (271)
....++.++|+++.. +++.+.|+.+.+|+..+++......... .....+++++.+ +..+.++.+.+|
T Consensus 165 ~~~~~~~~s~~g~~~----~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~ 239 (373)
T d2madh_ 165 SSPTCYHIHPGAPST----FYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQA 239 (373)
T ss_pred ccceeEEEecCCCcE----EEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEE
Confidence 345568899999874 4588999999999998887766554321 122555665554 455568899999
Q ss_pred eCCCCCCCcceEEEecCC----------ccceEEEEEcCCCcEEE----------EEecCCeEEEEECCCCeEEEEeecC
Q 024185 118 DSRSYDKGPFDTFLVGGD----------TAEVCDIKFSNDGKSML----------LTTTNNNIYVLDAYGGEKRCGFSLE 177 (271)
Q Consensus 118 d~~~~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~----------~~~~d~~i~~~d~~~~~~~~~~~~~ 177 (271)
+...... ........+ ......++++|++..++ ....++.+.+||..+++.+..+...
T Consensus 240 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~ 317 (373)
T d2madh_ 240 DISAAGA--TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG 317 (373)
T ss_pred EcCCCeE--EEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCC
Confidence 9887653 111111111 12334556677666544 3445678999999999988877643
Q ss_pred CCCCceeeEEECCCCCE--EEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecC
Q 024185 178 PSPNTNTEATFTPDGQY--VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR 233 (271)
Q Consensus 178 ~~~~~v~~~~~~~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 233 (271)
. .+..++|+|||+. +++++.|+.|++||+.+++.+..+..+....+.+++.++
T Consensus 318 ~---~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 318 H---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred C---CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 3 2788999999984 467888999999999999999999888777788887654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.51 E-value=6.3e-13 Score=106.09 Aligned_cols=181 Identities=8% Similarity=-0.037 Sum_probs=129.1
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCC-----------------------------cceE---EEcCCCCEEEEE-ecC
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRG-----------------------------RPTV---AFDQQGLVFAVA-MEA 111 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------~~~~---~~~~~~~~l~~~-~~d 111 (271)
++|++.+|.|++|++.+++.++.+..-. .+.+ ..+|||++|++. ..+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 6799999999999999998887763210 0222 236899998776 467
Q ss_pred CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEE--EEEecCC-----------------eEEEEECCCCeEEE
Q 024185 112 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM--LLTTTNN-----------------NIYVLDAYGGEKRC 172 (271)
Q Consensus 112 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l--~~~~~d~-----------------~i~~~d~~~~~~~~ 172 (271)
++|.++|+.+.+. .....+ .+......++|+|+|+.+ +..+.+. .+..+|..+.+...
T Consensus 94 ~rVavIDl~t~k~--~~ii~i-P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~ 170 (441)
T d1qnia2 94 TRVARIRLDIMKT--DKITHI-PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW 170 (441)
T ss_dssp TEEEEEETTTTEE--EEEEEC-TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred CEEEEEECCCCcE--eeEEec-CCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence 8999999999875 222232 345779999999999954 3333321 23558888888777
Q ss_pred EeecCCCCCceeeEEECCCCCEEEEecCC-----------------------------------------CcEEEEEcCC
Q 024185 173 GFSLEPSPNTNTEATFTPDGQYVVSGSGD-----------------------------------------GTLHAWNINT 211 (271)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------------------------------------g~i~iwd~~~ 211 (271)
++..... ...+.++|||+++++.+.+ +.+.+++...
T Consensus 171 qI~v~~~---p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~ 247 (441)
T d1qnia2 171 QVIVDGN---LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE 247 (441)
T ss_dssp EEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS
T ss_pred EEecCCC---ccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC
Confidence 7765544 5669999999998877543 3445555555
Q ss_pred ceeEEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCCC
Q 024185 212 RNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPS 252 (271)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~ 252 (271)
.+.+..++.... ...+.++|||+++++++ +++.+||+++.
T Consensus 248 ~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~ 290 (441)
T d1qnia2 248 SEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKL 290 (441)
T ss_dssp CSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred CceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence 566667766554 47899999999987775 88999998763
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.46 E-value=3.1e-13 Score=110.64 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=105.2
Q ss_pred eEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcc-eEEEecCCccceEEEEEcCCCcEEEEEec---------CCeEEEEE
Q 024185 95 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF-DTFLVGGDTAEVCDIKFSNDGKSMLLTTT---------NNNIYVLD 164 (271)
Q Consensus 95 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------d~~i~~~d 164 (271)
.+.|.+++++++. .++.+.+||+.+++...+ ....+..|...|.++.|||||++|+.++. ++.+.+||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 4789999987753 478899999999885110 00123445578999999999999998754 56789999
Q ss_pred CCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC------------------cceeE
Q 024185 165 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN------------------IGVVA 226 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~ 226 (271)
+.+++. ..+..+... +..+.|||||+++|... ++.+++|+..+++..+....+ .+...
T Consensus 99 ~~~~~~-~~l~~~~~~--~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~ 174 (470)
T d2bgra1 99 LNKRQL-ITEERIPNN--TQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (470)
T ss_dssp TTTTEE-CCSSCCCTT--EEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred CCCCcc-cccccCCcc--ccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence 998875 345545444 88899999999999864 668999999988876643221 12345
Q ss_pred EEEEecCCcEEEEeC
Q 024185 227 CLKWAPRRAMFVAAS 241 (271)
Q Consensus 227 ~~~~s~~~~~l~~~~ 241 (271)
.+.|||||+.|+...
T Consensus 175 ~~~wSPDGk~ia~~~ 189 (470)
T d2bgra1 175 ALWWSPNGTFLAYAQ 189 (470)
T ss_dssp CEEECTTSSEEEEEE
T ss_pred ccEECCCCCccceeE
Confidence 688999999999885
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.45 E-value=5.5e-13 Score=109.12 Aligned_cols=139 Identities=11% Similarity=0.054 Sum_probs=105.7
Q ss_pred eeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-------CcceEEEcCCCCEEEEEec---------CCe
Q 024185 50 GLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-------GRPTVAFDQQGLVFAVAME---------AGA 113 (271)
Q Consensus 50 ~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~---------d~~ 113 (271)
.+.|.+++++ + -..|+.+.+||..+++....+..+ .+..+.|||||++|+.++. ++.
T Consensus 21 ~~~W~~d~~~-----~--~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~ 93 (470)
T d2bgra1 21 SLRWISDHEY-----L--YKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (470)
T ss_dssp CCEECSSSEE-----E--EESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred CCEeCCCCEE-----E--EEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCce
Confidence 3678888886 2 245788999999999987766544 3567999999999998753 467
Q ss_pred EEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCC--------------
Q 024185 114 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS-------------- 179 (271)
Q Consensus 114 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-------------- 179 (271)
+.+||+.+++ ...+..+...+..+.|||||+.+|.. .++.+++|+..+++..+.......
T Consensus 94 ~~l~d~~~~~-----~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~ 167 (470)
T d2bgra1 94 YDIYDLNKRQ-----LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (470)
T ss_dssp EEEEETTTTE-----ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEEEECCCCc-----ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeee
Confidence 8999999876 44566788899999999999999985 467899999998876554322111
Q ss_pred --CCceeeEEECCCCCEEEEecCC
Q 024185 180 --PNTNTEATFTPDGQYVVSGSGD 201 (271)
Q Consensus 180 --~~~v~~~~~~~~~~~l~~~~~d 201 (271)
......+.|||||++|+....|
T Consensus 168 ~~~~~~~~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 168 EVFSAYSALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEE
T ss_pred eecCCccccEECCCCCccceeEec
Confidence 0124557899999999987554
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=4.2e-10 Score=84.58 Aligned_cols=203 Identities=16% Similarity=0.172 Sum_probs=123.0
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEec-CCeEEEEeCCC
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAME-AGAIKLFDSRS 121 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~ 121 (271)
....+...+|||||+.+++ .........+.+.+...+......... ......|+|+|+.++.... ++...++....
T Consensus 37 ~~~~~~sP~wSPDGk~IAf--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~ 114 (269)
T d2hqsa1 37 SPQPLMSPAWSPDGSKLAY--VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 114 (269)
T ss_dssp ESSCEEEEEECTTSSEEEE--EECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred CCCceeeeEECCCCCEEEE--EEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence 3455677899999999655 222333345666677666654444433 3455899999998887653 33333332222
Q ss_pred CCCCcceEEEecCCccceEEEEEcCCCcEEEEEe-cCC--eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEe
Q 024185 122 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 198 (271)
Q Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 198 (271)
... ................++++++.++..+ .++ .+...++..+..... .... .......|+|+++.++..
T Consensus 115 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~-~~~~--~~~~~~~~spdg~~~~~~ 188 (269)
T d2hqsa1 115 ASG---QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI-TWEG--SQNQDADVSSDGKFMVMV 188 (269)
T ss_dssp TTC---CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC-CCSS--SEEEEEEECTTSSEEEEE
T ss_pred ccc---cceeeeeccccccccccccccccceecccccCCceEeeeecccccceee-eccc--ccccccccccccceeEEE
Confidence 221 1333333445556667888877665554 344 566677666543332 2222 336678999999998876
Q ss_pred cCC-Cc--EEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-----CeEEEEcCCCCCCCc
Q 024185 199 SGD-GT--LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNST 256 (271)
Q Consensus 199 ~~d-g~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~v~iw~~~~~~~~~ 256 (271)
+.+ +. +.+.|...+.. ....+........|||||+.|+..+ ..+.+++++++....
T Consensus 189 ~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~ 252 (269)
T d2hqsa1 189 SSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR 252 (269)
T ss_dssp EECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred eecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence 654 34 44445544433 3333455567889999999887654 458999998876433
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.33 E-value=1.8e-10 Score=91.72 Aligned_cols=192 Identities=11% Similarity=0.006 Sum_probs=127.6
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec---CCcceEEEcCCCC--EEEEEecCC---------
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL---RGRPTVAFDQQGL--VFAVAMEAG--------- 112 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~--~l~~~~~d~--------- 112 (271)
.......+|||+++ +++...+.+|.++|+++++..+.+.. .+...++|+|+++ +++..+.+.
T Consensus 73 ~~s~t~gtpDGr~l----fV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 73 HISMTDGRYDGKYL----FINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp EEEEETTEEEEEEE----EEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred CcceecccCCCCEE----EEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence 44555568999985 45777899999999999998887753 3455699999998 444444332
Q ss_pred --------eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC---------------------------
Q 024185 113 --------AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN--------------------------- 157 (271)
Q Consensus 113 --------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------------------- 157 (271)
.+..+|..+.+. ..++.. .+....+.++|||+++++++.+
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v----~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~ 223 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDV----AWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIA 223 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSE----EEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHH
T ss_pred cccccccceEEeecCcccee----eEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceE
Confidence 234577777654 222221 2457889999999999887643
Q ss_pred --------------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEE-ecCCCcEEEEEcCCcee--------
Q 024185 158 --------------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS-GSGDGTLHAWNINTRNE-------- 214 (271)
Q Consensus 158 --------------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-------- 214 (271)
+.+.+++....+.+..+..... ...+.++|||+++++ +..++++.+||+.+.+.
T Consensus 224 ~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~ 300 (441)
T d1qnia2 224 AAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN---PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIEL 300 (441)
T ss_dssp HHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS---CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCG
T ss_pred EEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC---ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCc
Confidence 2344444444455555555444 455899999998764 56689999999865221
Q ss_pred ---EEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 215 ---VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 215 ---~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
+.......-.....+|+++|+.+.+.. ..|..|++.
T Consensus 301 ~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 301 RDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp GGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred ceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence 111111111234568999998877776 789999974
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.30 E-value=1.2e-09 Score=81.97 Aligned_cols=192 Identities=12% Similarity=0.044 Sum_probs=125.3
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec-CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL-RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG 125 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 125 (271)
....+++++++.. +++....+.+++++..+...+..... .....+++.++++++++-..+..+..++......
T Consensus 58 ~p~gvav~~~g~i-----~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~- 131 (260)
T d1rwia_ 58 QPQGLAVDGAGTV-----YVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ- 131 (260)
T ss_dssp SCCCEEECTTCCE-----EEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC-
T ss_pred CceEEEEcCCCCE-----EEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeecccccccccccccccee-
Confidence 3456888888876 55666666666665544444333332 2345699999999777766677788888766543
Q ss_pred cceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEE
Q 024185 126 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLH 205 (271)
Q Consensus 126 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 205 (271)
.............++++|+++.+++...++.|..+|....... .+... .......++++++|+++++....+.|.
T Consensus 132 ---~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~~-~~~~p~gi~~d~~g~l~vsd~~~~~i~ 206 (260)
T d1rwia_ 132 ---TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVV 206 (260)
T ss_dssp ---EECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCS-SCCSEEEEEECTTCCEEEEETTTTEEE
T ss_pred ---eeeeecccCCcceeeecCCCCEeeeccccccccccccccceee-eeecc-ccCCCccceeeeeeeeeeeecCCCEEE
Confidence 2221122345678999999998887788889999997654432 22211 113367899999999888888888888
Q ss_pred EEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcC
Q 024185 206 AWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 206 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
.++.............-....+|+++++|+++++-. +.|+.++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 207 KLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp EECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred EEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 887654432222122224568999999998777755 55555443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.30 E-value=1.2e-09 Score=85.99 Aligned_cols=160 Identities=11% Similarity=0.049 Sum_probs=103.0
Q ss_pred cceEEEcCCCCEEEEEec-CCeEEEEeCCCCCC-CcceEEEecCCccceEEEEEcCCCcEEEEEec-CCeEEEEECCCCe
Q 024185 93 RPTVAFDQQGLVFAVAME-AGAIKLFDSRSYDK-GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGE 169 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~ 169 (271)
...+.|+|||++++++.. ...|.+|+...... ...............+.++|+|+++++++..+ +++|.+|+...++
T Consensus 147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~ 226 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence 346999999998888854 35788887654332 11111222223457889999999998877665 8899999987654
Q ss_pred EEE--E---eecC------------CCCCceeeEEECCCCCEEEEecC------CCcEEEEEcCCceeEEE------ecC
Q 024185 170 KRC--G---FSLE------------PSPNTNTEATFTPDGQYVVSGSG------DGTLHAWNINTRNEVAC------WNG 220 (271)
Q Consensus 170 ~~~--~---~~~~------------~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~------~~~ 220 (271)
... . ...- ........+.++|||++++++.. .+.|..|++.....+.. ...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 306 (365)
T d1jofa_ 227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT 306 (365)
T ss_dssp CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS
T ss_pred ceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEc
Confidence 221 1 1100 00112456899999999987743 22477777764322221 122
Q ss_pred CcceeEEEEEec-CCcEEEEeC---CeEEEEcCCCC
Q 024185 221 NIGVVACLKWAP-RRAMFVAAS---SVLSFWIPNPS 252 (271)
Q Consensus 221 ~~~~v~~~~~s~-~~~~l~~~~---~~v~iw~~~~~ 252 (271)
......+++++| +|++|+.+. ++|.+|+.+..
T Consensus 307 ~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 307 SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 334457899998 799888875 78999987654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.25 E-value=5.8e-08 Score=73.23 Aligned_cols=182 Identities=9% Similarity=0.095 Sum_probs=129.1
Q ss_pred hhccCceEEEEEecCcceeEEEecC---CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEE
Q 024185 67 LLTTALEYGIFVLMLASFQGILRLR---GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK 143 (271)
Q Consensus 67 s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 143 (271)
..+.++.|..++. .++....+... ....+++.++++.+++....+.+.+++..... ........+......++
T Consensus 88 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~---~~~~g~~~~~~~~~~i~ 163 (279)
T d1q7fa_ 88 ERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV---LHKFGCSKHLEFPNGVV 163 (279)
T ss_dssp ECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE---EEEEECTTTCSSEEEEE
T ss_pred ccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCce---eecccccccccccceee
Confidence 3345556666665 45655565433 23458999999988887777888888865422 23333445667788999
Q ss_pred EcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CCcEEEEEcCCceeEEEecC--
Q 024185 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINTRNEVACWNG-- 220 (271)
Q Consensus 144 ~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-- 220 (271)
+.++++.+++....+.|++||. +++.+.++...........++++|+|+.+++-.. ++.|.+++ .+|+.+..+..
T Consensus 164 ~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~ 241 (279)
T d1q7fa_ 164 VNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKV 241 (279)
T ss_dssp ECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESS
T ss_pred eccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCC
Confidence 9999998888888999999995 5676776643333344778999999997776544 45699998 46887776632
Q ss_pred CcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCC
Q 024185 221 NIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSN 254 (271)
Q Consensus 221 ~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~ 254 (271)
.......+++.|||.++++.. +.|++|......+
T Consensus 242 ~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 242 KHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp CCSCEEEEEEETTTEEEEEETTTEEEEEECSCCCC
T ss_pred CCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeeecC
Confidence 233568999999998777665 7799999877643
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=5.3e-10 Score=90.87 Aligned_cols=197 Identities=12% Similarity=0.074 Sum_probs=127.4
Q ss_pred eEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-----CcceEEEcCCCCEEEEEec---------CCeEEE
Q 024185 51 LFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-----GRPTVAFDQQGLVFAVAME---------AGAIKL 116 (271)
Q Consensus 51 ~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~---------d~~i~i 116 (271)
..|.+++.++ .-..+|.+.+||+.+++....+... .+....||||+++++.... .+.+.+
T Consensus 22 ~~W~~~~~~~------~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i 95 (465)
T d1xfda1 22 AKWISDTEFI------YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (465)
T ss_dssp CCBSSSSCBC------CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred CEEeCCCcEE------EEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEE
Confidence 4577887752 3367889999999988765545433 2445789999999887643 468899
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC----------------
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---------------- 180 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---------------- 180 (271)
+|+.++... ...........+....|||||+.+|... ++.|.+.+..+++..+........
T Consensus 96 ~d~~~~~~~--~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~ 172 (465)
T d1xfda1 96 SKIPHGDPQ--SLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL 172 (465)
T ss_dssp EESSSCCCE--ECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred EEccCCcee--eccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhc
Confidence 999988751 1111223344566789999999998876 668999998777655443221110
Q ss_pred CceeeEEECCCCCEEEEecCC-C---------------------------------cEEEEEcCCceeEEEe------cC
Q 024185 181 NTNTEATFTPDGQYVVSGSGD-G---------------------------------TLHAWNINTRNEVACW------NG 220 (271)
Q Consensus 181 ~~v~~~~~~~~~~~l~~~~~d-g---------------------------------~i~iwd~~~~~~~~~~------~~ 220 (271)
..-..+-|||||++|+....| . .+.++|+.++...... ..
T Consensus 173 ~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~ 252 (465)
T d1xfda1 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM 252 (465)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred cccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcc
Confidence 112357799999999875321 2 2445555444332211 11
Q ss_pred CcceeEEEEEecCCcEEEEeC------CeEEEEcCCCCCCCc
Q 024185 221 NIGVVACLKWAPRRAMFVAAS------SVLSFWIPNPSSNST 256 (271)
Q Consensus 221 ~~~~v~~~~~s~~~~~l~~~~------~~v~iw~~~~~~~~~ 256 (271)
...-+..+.|+|++++++... ..+.++|..+++...
T Consensus 253 ~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~ 294 (465)
T d1xfda1 253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK 294 (465)
T ss_dssp SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred ccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEE
Confidence 222467889999998776653 348889998886543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.19 E-value=2.7e-08 Score=78.16 Aligned_cols=200 Identities=7% Similarity=0.025 Sum_probs=117.5
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-eeEEE--ec-CCcceEEEcCCCCEEEEEe---cCCeEEEE
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-FQGIL--RL-RGRPTVAFDQQGLVFAVAM---EAGAIKLF 117 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~--~~-~~~~~~~~~~~~~~l~~~~---~d~~i~i~ 117 (271)
....+.++++|+++.+++ . ..+.+..|.+.... ..... .. .....++++++++.++... ..+.+..+
T Consensus 39 ~~~~s~la~s~d~~~ly~-----~-~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~ 112 (365)
T d1jofa_ 39 DEPISWMTFDHERKNIYG-----A-AMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYAN 112 (365)
T ss_dssp TCCCSEEEECTTSSEEEE-----E-EBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred CCCCCEEEEcCCCCEEEE-----E-eCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEe
Confidence 344556999999998433 2 34567777765432 22221 22 2233488899998544332 23555555
Q ss_pred eCCCCCCCcceEEE--------------ecCCccceEEEEEcCCCcEEEEEec-CCeEEEEECCC-CeEE--EEeecCCC
Q 024185 118 DSRSYDKGPFDTFL--------------VGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYG-GEKR--CGFSLEPS 179 (271)
Q Consensus 118 d~~~~~~~~~~~~~--------------~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~-~~~~--~~~~~~~~ 179 (271)
....... ...... .......+.++.|+|||+++++++. ...|.+|+... ++.. ........
T Consensus 113 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~ 191 (365)
T d1jofa_ 113 PFYKFAG-YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP 191 (365)
T ss_dssp EESSSCC-EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred EccCCCC-cceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC
Confidence 4322110 000000 1112234789999999999888865 45788887653 3322 22222222
Q ss_pred CCceeeEEECCCCCEEEEecC-CCcEEEEEcCCceeE--EE---ec--------------CCcceeEEEEEecCCcEEEE
Q 024185 180 PNTNTEATFTPDGQYVVSGSG-DGTLHAWNINTRNEV--AC---WN--------------GNIGVVACLKWAPRRAMFVA 239 (271)
Q Consensus 180 ~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~--~~---~~--------------~~~~~v~~~~~s~~~~~l~~ 239 (271)
......+.|+|+++++++..+ ++.|.+|++..++.. .. .. .+......+.++|||++|++
T Consensus 192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv 271 (365)
T d1jofa_ 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE
Confidence 245788999999998876655 789999998765432 11 11 11234567899999999887
Q ss_pred eC--------CeEEEEcCCC
Q 024185 240 AS--------SVLSFWIPNP 251 (271)
Q Consensus 240 ~~--------~~v~iw~~~~ 251 (271)
+. ..|..|++..
T Consensus 272 snr~~~~~~~~~i~~~~~~~ 291 (365)
T d1jofa_ 272 SSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp EEEESSTTSCCEEEEEEECT
T ss_pred EcccCCCccceEEEEEEecC
Confidence 73 2376676654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.17 E-value=5.6e-09 Score=79.93 Aligned_cols=198 Identities=12% Similarity=0.001 Sum_probs=130.1
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe-cCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR-LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG 125 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 125 (271)
-+..++++|+|+. +++...+++|..|+... +...... ......++|++||+++++...++.+..++.......
T Consensus 29 ~~e~iAv~pdG~l-----~vt~~~~~~I~~i~p~g-~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~ 102 (302)
T d2p4oa1 29 FLENLASAPDGTI-----FVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 102 (302)
T ss_dssp CEEEEEECTTSCE-----EEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CcCCEEECCCCCE-----EEEeCCCCEEEEEeCCC-CEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc
Confidence 3567999999997 67888899888888653 3222222 234566999999998888888888888887654431
Q ss_pred cceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecC--------CCCCceeeEEECCCCCEEEE
Q 024185 126 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE--------PSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 126 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~ 197 (271)
. ..............+++.++++++++.+.++.+..+|...+......... ........+.++. +.++++
T Consensus 103 ~-~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~ 180 (302)
T d2p4oa1 103 V-ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVS 180 (302)
T ss_dssp E-EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEE
T ss_pred e-eeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Cceeee
Confidence 1 12222234456889999999998888888999999998877543322211 1112344455543 234455
Q ss_pred ecCCCcEEEEEcCCceeEEE--ecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 198 GSGDGTLHAWNINTRNEVAC--WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
.+..+.|..++......... ..........++++++|+++++.. +.|..++...+
T Consensus 181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~ 239 (302)
T d2p4oa1 181 NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS 239 (302)
T ss_dssp ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred cCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence 56678888888765432211 111223356799999999777764 77888887654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.12 E-value=1.4e-08 Score=75.95 Aligned_cols=194 Identities=9% Similarity=0.070 Sum_probs=122.7
Q ss_pred EeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE-EecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCc
Q 024185 49 RGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI-LRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP 126 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 126 (271)
..+++.++|... ++..+..+.+..++..+...... .... ....++++++++.+++...++.+++++..+...
T Consensus 17 ~~vavd~dG~i~----v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~-- 90 (260)
T d1rwia_ 17 SGVAVDSAGNVY----VTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT-- 90 (260)
T ss_dssp EEEEECTTCCEE----EEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE--
T ss_pred CEEEEcCCCCEE----EEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecccee--
Confidence 468899998862 23455667777766544332211 2222 234599999998776666666666655444331
Q ss_pred ceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEE
Q 024185 127 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA 206 (271)
Q Consensus 127 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 206 (271)
.... ........+++.++++.+++-..+..+..++...... ..+.. ........++++|+++.+++...++.|..
T Consensus 91 --~~~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~-~~~~~-~~~~~p~~i~~~~~g~~~v~~~~~~~i~~ 165 (260)
T d1rwia_ 91 --VLPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVK 165 (260)
T ss_dssp --ECCC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC-EECCC-CSCCSCCEEEECTTCCEEEEEGGGTEEEE
T ss_pred --eeee-eeeeecccccccccceeEeecccccccccccccccee-eeeee-cccCCcceeeecCCCCEeeeccccccccc
Confidence 2222 2235678999999998777766677788887654332 22211 11123567999999998888888889999
Q ss_pred EEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 207 WNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 207 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
+|...................+++.++|+++++.. +.|..++.....
T Consensus 166 ~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~ 214 (260)
T d1rwia_ 166 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 214 (260)
T ss_dssp ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC
T ss_pred cccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe
Confidence 99875544333233445568999999999888776 668878766543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=4.9e-08 Score=72.91 Aligned_cols=178 Identities=17% Similarity=0.174 Sum_probs=109.3
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec--CcceeEEEecCC-cceEEEcCCCCEEEEE-ecCC--eE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM--LASFQGILRLRG-RPTVAFDQQGLVFAVA-MEAG--AI 114 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~d~--~i 114 (271)
+..+.+......++|+|+.++. ....++...++... ............ .....++++++.++.. ..++ .+
T Consensus 78 ~~~~~~~~~~~~~spdg~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 153 (269)
T d2hqsa1 78 VASFPRHNGAPAFSPDGSKLAF----ALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV 153 (269)
T ss_dssp EECCSSCEEEEEECTTSSEEEE----EECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred EeeeecccccceecCCCCeeeE----eeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceE
Confidence 3445566777899999998533 22333333333332 222222222222 2336777877755554 3444 56
Q ss_pred EEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC---eEEEEECCCCeEEEEeecCCCCCceeeEEECCC
Q 024185 115 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN---NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 191 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 191 (271)
...+...... ..+..+........|+|+++.++..+.++ .+.+.|...+.. ..+. ... ......|+||
T Consensus 154 ~~~~~~~~~~-----~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~-~~~--~~~~p~~SPD 224 (269)
T d2hqsa1 154 YKVNINGGAP-----QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLS-STF--LDETPSLAPN 224 (269)
T ss_dssp EEEETTSSCC-----EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECC-CSS--SCEEEEECTT
T ss_pred eeeecccccc-----eeeecccccccccccccccceeEEEeecCCceeeeEeecccccc-eEee-cCc--cccceEECCC
Confidence 6667666553 33344566778889999999998876643 455566555543 2222 222 2567899999
Q ss_pred CCEEEEecC---CCcEEEEEcCCceeEEEecCCcceeEEEEEec
Q 024185 192 GQYVVSGSG---DGTLHAWNINTRNEVACWNGNIGVVACLKWAP 232 (271)
Q Consensus 192 ~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 232 (271)
|++|+..+. ...|+++++..+.. ..+....+.+...+|||
T Consensus 225 G~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 225 GTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSP 267 (269)
T ss_dssp SSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence 999886554 34789999976554 55655677788999998
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.09 E-value=5.6e-08 Score=74.62 Aligned_cols=193 Identities=15% Similarity=0.123 Sum_probs=119.6
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec---C---CcceEEEcCCCCEEEEEec----------
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL---R---GRPTVAFDQQGLVFAVAME---------- 110 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~---~~~~~~~~~~~~~l~~~~~---------- 110 (271)
.-..+++.+++.. ++.+...+.+...+.+.+........ . ..+.+++.++|++.++-..
T Consensus 72 ~P~Gl~~~~dg~~-----l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~ 146 (314)
T d1pjxa_ 72 IPAGCQCDRDANQ-----LFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp CEEEEEECSSSSE-----EEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred cceeEEEeCCCCE-----EEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccc
Confidence 3456899999876 34445556678888765442211111 1 2345899999987665421
Q ss_pred -----CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc----EEE-EEecCCeEEEEECCCCeEEEE---eec-
Q 024185 111 -----AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK----SML-LTTTNNNIYVLDAYGGEKRCG---FSL- 176 (271)
Q Consensus 111 -----d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~----~l~-~~~~d~~i~~~d~~~~~~~~~---~~~- 176 (271)
.|.|+.++... +. ..+.........++|+|+++ .|+ +-+..+.|..||+.....+.. +..
T Consensus 147 ~~~~~~G~v~~~~~dg-~~-----~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~ 220 (314)
T d1pjxa_ 147 SMQEKFGSIYCFTTDG-QM-----IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI 220 (314)
T ss_dssp TTSSSCEEEEEECTTS-CE-----EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred eeccCCceEEEEeecC-ce-----eEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEc
Confidence 23455555432 21 11112223456789998764 444 446688999998754322211 111
Q ss_pred CC-CCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcE-EEEeC--CeEEEEcCC
Q 024185 177 EP-SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAM-FVAAS--SVLSFWIPN 250 (271)
Q Consensus 177 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~--~~v~iw~~~ 250 (271)
.. .....-.+++.++|++.++....+.|.+||.+.++.+..+..+....++++|.||++. +++.+ +.|.-.++.
T Consensus 221 ~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 221 PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred cccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 11 1123456899999998888777889999999888877777666667899999999874 45544 666666653
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.09 E-value=8.5e-08 Score=72.30 Aligned_cols=193 Identities=10% Similarity=0.094 Sum_probs=134.0
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC----C----cceEEEcCCC-CEEEEE-ecCCeEEEE
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR----G----RPTVAFDQQG-LVFAVA-MEAGAIKLF 117 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~----~~~~~~~~~~-~~l~~~-~~d~~i~i~ 117 (271)
-..++++++++. +++-.....|++||.+ ++.+..+... . ...+++.++. ..+++. +.++.|..+
T Consensus 25 P~gvavd~dg~i-----~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~ 98 (279)
T d1q7fa_ 25 PSGVAVNAQNDI-----IVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 98 (279)
T ss_dssp EEEEEECTTCCE-----EEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred ccEEEEcCCCCE-----EEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccc
Confidence 467999999987 5566677889999974 6666666321 1 1225655554 444433 445677777
Q ss_pred eCCCCCCCcceEEEe-cCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEE
Q 024185 118 DSRSYDKGPFDTFLV-GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 196 (271)
Q Consensus 118 d~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 196 (271)
+..... ...+ .........+++.++|..+++....+.+.+++ .+++.+..+...........+++.++++.++
T Consensus 99 ~~~g~~-----~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~-~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v 172 (279)
T d1q7fa_ 99 NQYGQF-----VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFD-QNGNVLHKFGCSKHLEFPNGVVVNDKQEIFI 172 (279)
T ss_dssp CTTSCE-----EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEEC-TTSCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred cccccc-----eeecCCCcccccceeccccCCcEEEEeeccceeeEec-cCCceeecccccccccccceeeeccceeEEe
Confidence 764322 2222 23345678899999999888877788899998 4567777765544445577899999999888
Q ss_pred EecCCCcEEEEEcCCceeEEEec--CCcceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCC
Q 024185 197 SGSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSN 254 (271)
Q Consensus 197 ~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~ 254 (271)
+....+.|++||. +++.+.++. +......++++.|+|+++++-+ ..|.+|+.+ ++.
T Consensus 173 ~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~ 233 (279)
T d1q7fa_ 173 SDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQL 233 (279)
T ss_dssp EEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCE
T ss_pred eeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCE
Confidence 8888899999996 567777763 3344578999999999877754 359999854 443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.03 E-value=4.8e-07 Score=69.47 Aligned_cols=209 Identities=12% Similarity=0.053 Sum_probs=121.2
Q ss_pred cceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhcc--CceEEEEEecCcceeEEEecC----C
Q 024185 19 QNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTT--ALEYGIFVLMLASFQGILRLR----G 92 (271)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~----~ 92 (271)
.++.+..++...+ .....+.........++++++|+.+++ ..+.. .+.+...+..++......... .
T Consensus 59 ~~g~I~ri~p~g~----~~~~~~~~~~~~p~gla~~~dG~l~va---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 131 (319)
T d2dg1a1 59 FEGNIFKINPETK----EIKRPFVSHKANPAAIKIHKDGRLFVC---YLGDFKSTGGIFAATENGDNLQDIIEDLSTAYC 131 (319)
T ss_dssp TTCEEEEECTTTC----CEEEEEECSSSSEEEEEECTTSCEEEE---ECTTSSSCCEEEEECTTSCSCEEEECSSSSCCC
T ss_pred CCCEEEEEECCCC----eEEEEEeCCCCCeeEEEECCCCCEEEE---ecCCCccceeEEEEcCCCceeeeeccCCCcccC
Confidence 3455555544333 122223334445677899999986322 01122 233444444444433333221 2
Q ss_pred cceEEEcCCCCEEEEEec------CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEE-ecCCeEEEEEC
Q 024185 93 RPTVAFDQQGLVFAVAME------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDA 165 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~ 165 (271)
.+.+++.++|++.++... .+.+..++...... ..+...-.....++|+||++.|+.+ +..+.|+.||+
T Consensus 132 ~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~-----~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~ 206 (319)
T d2dg1a1 132 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-----TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIAL 206 (319)
T ss_dssp EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-----EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred CcceeEEeccceeecccccccccCcceeEEEeccccee-----EEEeeccceeeeeeeccccceEEEecccCCceEEEEE
Confidence 344899999986555422 23466666554332 1111222345779999999877555 55789999997
Q ss_pred CCC-eEEE----E-eecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec------CCcceeEEEEEecC
Q 024185 166 YGG-EKRC----G-FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN------GNIGVVACLKWAPR 233 (271)
Q Consensus 166 ~~~-~~~~----~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~s~~ 233 (271)
... .... . ..........-.++++++|++.++....+.|.++|. +++.+..+. ++...+++++|.|+
T Consensus 207 ~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~ 285 (319)
T d2dg1a1 207 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 285 (319)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCC
Confidence 642 1111 1 111111122456999999998888888899999995 788887774 23345789999998
Q ss_pred CcEEEEe
Q 024185 234 RAMFVAA 240 (271)
Q Consensus 234 ~~~l~~~ 240 (271)
+..+++.
T Consensus 286 ~~~~~~t 292 (319)
T d2dg1a1 286 TNQLIIC 292 (319)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 7765544
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.03 E-value=5e-08 Score=73.21 Aligned_cols=194 Identities=10% Similarity=0.015 Sum_probs=109.9
Q ss_pred eEEecC--CchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEEec-C-----CeEEEEeCCC
Q 024185 51 LFLSAC--LQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVAME-A-----GAIKLFDSRS 121 (271)
Q Consensus 51 ~~~s~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-d-----~~i~i~d~~~ 121 (271)
...||+ |+.+++ ..+|.|.+.|+.+++..+.....+ ....+|||||++||.... + ..|.+++..+
T Consensus 4 ~~~sPdi~G~~v~f------~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~ 77 (281)
T d1k32a2 4 LLLNPDIHGDRIIF------VCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN 77 (281)
T ss_dssp CCEEEEEETTEEEE------EETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred cccCCCCCCCEEEE------EeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC
Confidence 456888 887433 245668888998888765544443 344899999999987642 2 2477778777
Q ss_pred CCCCcceEEEec-------CCccceEEEEEcCCCcEEEEEec------CCeEEEEECCCCeEEEEeec------------
Q 024185 122 YDKGPFDTFLVG-------GDTAEVCDIKFSNDGKSMLLTTT------NNNIYVLDAYGGEKRCGFSL------------ 176 (271)
Q Consensus 122 ~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~------------ 176 (271)
++. ..+. ..........|+|||+.++.... ...+...+...+........
T Consensus 78 g~~-----~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (281)
T d1k32a2 78 GEI-----KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRR 152 (281)
T ss_dssp TEE-----EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEE
T ss_pred Cce-----EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCe
Confidence 653 2221 12234567889999998887533 12244444432221110000
Q ss_pred ------CC-----------------------------CCCceeeEEECCCCCEEEEecC--CCcEEEEEcCCceeEEEec
Q 024185 177 ------EP-----------------------------SPNTNTEATFTPDGQYVVSGSG--DGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 177 ------~~-----------------------------~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~ 219 (271)
.. .........++++. .+..... ...|.++|+.+++..+ +.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~-lt 230 (281)
T d1k32a2 153 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRK-HT 230 (281)
T ss_dssp EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEE-CC
T ss_pred EEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCceEE-ee
Confidence 00 00011222333332 1222222 2357788887665443 33
Q ss_pred CCcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCCcCC
Q 024185 220 GNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 220 ~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~~~~ 258 (271)
.+.. .....|+|||+.|+... +.+.++|+++++.....
T Consensus 231 ~~~~-~~~~~~SpDG~~I~f~~~~~l~~~d~~~g~~~~i~ 269 (281)
T d1k32a2 231 SFTD-YYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIE 269 (281)
T ss_dssp CCCS-SCEEEEEESSSCEEEEETTEEEEECTTTCCEEECC
T ss_pred cCCC-cccccCcCCCCEEEEEeCCEEEEEECCCCCEEEec
Confidence 2222 23346899999877655 89999999998765443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.99 E-value=8.5e-08 Score=73.18 Aligned_cols=209 Identities=11% Similarity=0.007 Sum_probs=128.8
Q ss_pred eEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce-eEEE-e
Q 024185 13 ALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF-QGIL-R 89 (271)
Q Consensus 13 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~-~ 89 (271)
.|+++ ..++.+..++.... .+.+....+...+++++++|+. +++...++.+..++...... ...+ .
T Consensus 40 ~l~vt~~~~~~I~~i~p~g~------~~~~~~~~~~~~gla~~~dG~l-----~v~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (302)
T d2p4oa1 40 TIFVTNHEVGEIVSITPDGN------QQIHATVEGKVSGLAFTSNGDL-----VATGWNADSIPVVSLVKSDGTVETLLT 108 (302)
T ss_dssp CEEEEETTTTEEEEECTTCC------EEEEEECSSEEEEEEECTTSCE-----EEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred CEEEEeCCCCEEEEEeCCCC------EEEEEcCCCCcceEEEcCCCCe-----EEEecCCceEEEEEecccccceeeccc
Confidence 44444 23555666553322 1223445577889999999997 66777778888887754321 2222 2
Q ss_pred c---CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEec---------CCccceEEEEEcCCCcEEEEEecC
Q 024185 90 L---RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG---------GDTAEVCDIKFSNDGKSMLLTTTN 157 (271)
Q Consensus 90 ~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~~~~~d 157 (271)
. ...+.+++.++++++++.+.++.+..+|...+.. ...... ........+.+.. +..+++.+..
T Consensus 109 ~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~ 184 (302)
T d2p4oa1 109 LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG---SIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEK 184 (302)
T ss_dssp CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE---EEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTT
T ss_pred cCCccccceeEEccCCCEEeeccccccceeeeccCCcc---eeEecCCccceeeccCcccccccccccC-CceeeecCCC
Confidence 1 1245589999999888888888998888876542 111111 1112345566654 3445555678
Q ss_pred CeEEEEECCCCeEEEE---eecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE--EecCCcceeEEEEE--
Q 024185 158 NNIYVLDAYGGEKRCG---FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA--CWNGNIGVVACLKW-- 230 (271)
Q Consensus 158 ~~i~~~d~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~-- 230 (271)
+.|+.++......... +.... ....++++++|++.++...++.|..++.. ++... .....-...++++|
T Consensus 185 ~~i~~~~~~~~~~~~~~~~~~~~~---~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~ 260 (302)
T d2p4oa1 185 MLLLRIPVDSTDKPGEPEIFVEQT---NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQ 260 (302)
T ss_dssp TEEEEEEBCTTSCBCCCEEEEESC---CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECC
T ss_pred CeEEeccccccccccccccccCCC---CCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcC
Confidence 8999888765432221 11122 24569999999988888888999999875 44322 23323345789999
Q ss_pred -ecCCcEEEEe
Q 024185 231 -APRRAMFVAA 240 (271)
Q Consensus 231 -s~~~~~l~~~ 240 (271)
++|++.|..+
T Consensus 261 ~~~D~~~Lyvt 271 (302)
T d2p4oa1 261 TEGDCTAIYVV 271 (302)
T ss_dssp STTTTTEEEEE
T ss_pred CCCCCCEEEEE
Confidence 6677766544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=6.9e-09 Score=84.21 Aligned_cols=219 Identities=10% Similarity=-0.000 Sum_probs=125.7
Q ss_pred EEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhh----hhhhccCceEEEEEecCcceeEEEe
Q 024185 14 LLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALC----LVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~----l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
+++...++.+.+++...+.... .+..-....-.+....+|||+++++... +.--+..+.+.++|+.++.......
T Consensus 30 ~~~~~~~g~i~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~ 108 (465)
T d1xfda1 30 FIYREQKGTVRLWNVETNTSTV-LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP 108 (465)
T ss_dssp BCCCCSSSCEEEBCGGGCCCEE-EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC
T ss_pred EEEEeCCCcEEEEECCCCCEEE-EEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccC
Confidence 4444556777777776663321 1111111223455577999999742200 0001346788999999887654432
Q ss_pred cC----CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccc-----------------eEEEEEcCCC
Q 024185 90 LR----GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE-----------------VCDIKFSNDG 148 (271)
Q Consensus 90 ~~----~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-----------------v~~~~~s~~~ 148 (271)
.. ......|||||+.+|... ++.|++.+..++.. . .....+..+. -..+-|||||
T Consensus 109 ~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~--~-~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDg 184 (465)
T d1xfda1 109 PEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQA--I-RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG 184 (465)
T ss_dssp TTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCC--E-EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS
T ss_pred ccCCccccceeeeccCCceEEEEe-cceEEEEecCCCce--E-EEecccCcceeeccccchhhhhhhccccceEEECCCC
Confidence 22 233489999999998876 67899988876653 1 2222222221 2467799999
Q ss_pred cEEEEEecC-C---------------------------------eEEEEECCCCeEEEEeecC----CCCCceeeEEECC
Q 024185 149 KSMLLTTTN-N---------------------------------NIYVLDAYGGEKRCGFSLE----PSPNTNTEATFTP 190 (271)
Q Consensus 149 ~~l~~~~~d-~---------------------------------~i~~~d~~~~~~~~~~~~~----~~~~~v~~~~~~~ 190 (271)
++||....| . .+.++|+.++......... .....+..+.|+|
T Consensus 185 k~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~ 264 (465)
T d1xfda1 185 TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT 264 (465)
T ss_dssp SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS
T ss_pred CeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcC
Confidence 999987532 2 2444444433221111100 0112356789999
Q ss_pred CCCEEEEecC-C---CcEEEEEcCCceeEEEecC-Cccee----EEEEEecCCcEE
Q 024185 191 DGQYVVSGSG-D---GTLHAWNINTRNEVACWNG-NIGVV----ACLKWAPRRAMF 237 (271)
Q Consensus 191 ~~~~l~~~~~-d---g~i~iwd~~~~~~~~~~~~-~~~~v----~~~~~s~~~~~l 237 (271)
++++++.... + ..+.++|..+++....+.. ..++| ....|+|||+.+
T Consensus 265 d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~ 320 (465)
T d1xfda1 265 STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF 320 (465)
T ss_dssp SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence 9986665432 2 3688999999887655432 22222 346789999843
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.94 E-value=1.9e-06 Score=66.04 Aligned_cols=200 Identities=10% Similarity=0.021 Sum_probs=122.1
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEec----CCeEEEEeCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAME----AGAIKLFDSR 120 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~ 120 (271)
....++|.++|+. .++-...+.|..|+.++++....+... ....+++++||+++++... .+.+...+..
T Consensus 41 ~lEG~~~D~~G~L-----y~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~ 115 (319)
T d2dg1a1 41 QLEGLNFDRQGQL-----FLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN 115 (319)
T ss_dssp CEEEEEECTTSCE-----EEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred CcEeCEECCCCCE-----EEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCC
Confidence 3457899999986 445667888988988777655544332 3455999999987776543 2345566665
Q ss_pred CCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec------CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCE
Q 024185 121 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 194 (271)
.... ...............+++.++|++.++... .+.+..++...+. +..+...-. ....++|+||++.
T Consensus 116 ~~~~--~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~--~pnGia~s~dg~~ 190 (319)
T d2dg1a1 116 GDNL--QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNIS--VANGIALSTDEKV 190 (319)
T ss_dssp SCSC--EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEES--SEEEEEECTTSSE
T ss_pred Ccee--eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccc--eeeeeeeccccce
Confidence 5543 111111112345778999999986555322 2346656544333 232221111 2567999999986
Q ss_pred EEE-ecCCCcEEEEEcCCc-eeEEE-------ecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 195 VVS-GSGDGTLHAWNINTR-NEVAC-------WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 195 l~~-~~~dg~i~iwd~~~~-~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
|+. -+..+.|..||+... ..... ..........+++.++|++.++.. +.|.+||.+ ++.+.+
T Consensus 191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~-G~~l~~ 263 (319)
T d2dg1a1 191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQ 263 (319)
T ss_dssp EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEE
T ss_pred EEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC-CcEEEE
Confidence 654 456789999998632 21111 111122356899999999766653 889999974 554443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.87 E-value=5.5e-06 Score=62.61 Aligned_cols=208 Identities=13% Similarity=0.071 Sum_probs=129.5
Q ss_pred eeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
+.|.+. ..++.+..++...+.. +.+. ....+.++++.+++.+ ++ ++.+ .+..+|.++++.......
T Consensus 30 ~~l~wvDi~~~~I~r~d~~~g~~-----~~~~-~~~~~~~i~~~~dg~l-----~v-a~~~-gl~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 30 GTAWWFNILERELHELHLASGRK-----TVHA-LPFMGSALAKISDSKQ-----LI-ASDD-GLFLRDTATGVLTLHAEL 96 (295)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEE-----EEEE-CSSCEEEEEEEETTEE-----EE-EETT-EEEEEETTTCCEEEEECS
T ss_pred CEEEEEECCCCEEEEEECCCCeE-----EEEE-CCCCcEEEEEecCCCE-----EE-EEeC-ccEEeecccceeeEEeee
Confidence 344444 3456666766655521 1222 2345677888899886 32 3444 488899998875543322
Q ss_pred C------CcceEEEcCCCCEEEEEecC----CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEE-ecCCe
Q 024185 91 R------GRPTVAFDQQGLVFAVAMEA----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNN 159 (271)
Q Consensus 91 ~------~~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~ 159 (271)
. ..+.+.+.|+|++.++...+ +.-.+|....++. .. +.........++|+++++.++.+ +..+.
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~----~~-~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~ 171 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV----TK-LFADISIPNSICFSPDGTTGYFVDTKVNR 171 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE----EE-EEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcE----EE-EeeccCCcceeeecCCCceEEEeecccce
Confidence 1 13448899999866655322 2445566555542 11 11122345789999999876555 55788
Q ss_pred EEEEECCCC------eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEe-c
Q 024185 160 IYVLDAYGG------EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA-P 232 (271)
Q Consensus 160 i~~~d~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~ 232 (271)
|..|++... +................++++.+|++.++.-..+.|..||. +++.+..+.-....+++++|- |
T Consensus 172 I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~ 250 (295)
T d2ghsa1 172 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGP 250 (295)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEEST
T ss_pred eeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCC
Confidence 999987421 11111222222344677999999998887777789999995 688888887655678999996 5
Q ss_pred CCcEEE
Q 024185 233 RRAMFV 238 (271)
Q Consensus 233 ~~~~l~ 238 (271)
|.+.|.
T Consensus 251 d~~~Ly 256 (295)
T d2ghsa1 251 DASRLL 256 (295)
T ss_dssp TSCEEE
T ss_pred CCCEEE
Confidence 655443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.85 E-value=7.9e-07 Score=68.04 Aligned_cols=205 Identities=13% Similarity=0.069 Sum_probs=121.8
Q ss_pred EeeEEecCCchhhhhhh--hhhccCceEEEEEecCcceeEEEec--C---C-cceEEEcCCCCEEEEEecCCeEEEEeCC
Q 024185 49 RGLFLSACLQLMIALCL--VLLTTALEYGIFVLMLASFQGILRL--R---G-RPTVAFDQQGLVFAVAMEAGAIKLFDSR 120 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l--~s~~~dg~i~iwd~~~~~~~~~~~~--~---~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 120 (271)
...++.++|+..++... .....+|+|..||.+++........ . . ...++|.++++.++++...+.+..++..
T Consensus 21 EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~ 100 (314)
T d1pjxa_ 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD 100 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT
T ss_pred eEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCC
Confidence 34678899886322000 0112257788899887765433221 1 1 2349999999988888877788888876
Q ss_pred CCCCCcceEEEecCC-ccceEEEEEcCCCcEEEEEec---------------CCeEEEEECCCCeEEEEeecCCCCCcee
Q 024185 121 SYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTTT---------------NNNIYVLDAYGGEKRCGFSLEPSPNTNT 184 (271)
Q Consensus 121 ~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~---------------d~~i~~~d~~~~~~~~~~~~~~~~~~v~ 184 (271)
...... ......+. -.....+++.++|++.++-.. .|.+..++. .++.......-. ...
T Consensus 101 g~~~~~-~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~~~---~pN 175 (314)
T d1pjxa_ 101 GTFEEI-AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTAFQ---FPN 175 (314)
T ss_dssp SCEEEC-CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEEES---SEE
T ss_pred CcEEEE-EeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCCcc---eee
Confidence 543200 00001111 113578999999987666421 245555553 344333222211 145
Q ss_pred eEEECCCCC-----EEEEecCCCcEEEEEcCCceeEE------EecC-CcceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 185 EATFTPDGQ-----YVVSGSGDGTLHAWNINTRNEVA------CWNG-NIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 185 ~~~~~~~~~-----~l~~~~~dg~i~iwd~~~~~~~~------~~~~-~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
.++|+|+++ +.++-+..+.|..||+.....+. .+.+ +......+++.++|++.++.. +.|.+||.+
T Consensus 176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~ 255 (314)
T d1pjxa_ 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence 688988764 44455667889999876432222 2222 223456899999999776653 889999998
Q ss_pred CCCCCcCC
Q 024185 251 PSSNSTDE 258 (271)
Q Consensus 251 ~~~~~~~~ 258 (271)
+++.....
T Consensus 256 ~g~~~~~i 263 (314)
T d1pjxa_ 256 GGQPKMRI 263 (314)
T ss_dssp CBSCSEEE
T ss_pred CCEEEEEE
Confidence 87765543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.79 E-value=3e-06 Score=64.10 Aligned_cols=181 Identities=10% Similarity=-0.012 Sum_probs=116.6
Q ss_pred ccCceEEEEEecCcceeEEEec-CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecC--CccceEEEEEc
Q 024185 69 TTALEYGIFVLMLASFQGILRL-RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG--DTAEVCDIKFS 145 (271)
Q Consensus 69 ~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~v~~~~~s 145 (271)
-..+.|.-||.++++.. .+.. ..+.++++.++|+++++ +. ..+..+|..+++.. ....... ....+..+.+.
T Consensus 37 i~~~~I~r~d~~~g~~~-~~~~~~~~~~i~~~~dg~l~va-~~-~gl~~~d~~tg~~~--~l~~~~~~~~~~~~nd~~vd 111 (295)
T d2ghsa1 37 ILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIA-SD-DGLFLRDTATGVLT--LHAELESDLPGNRSNDGRMH 111 (295)
T ss_dssp GGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCEE--EEECSSTTCTTEEEEEEEEC
T ss_pred CCCCEEEEEECCCCeEE-EEECCCCcEEEEEecCCCEEEE-Ee-CccEEeecccceee--EEeeeecCCCcccceeeEEC
Confidence 35678888998887643 3433 34566888888876665 44 46889999988741 1111111 12357889999
Q ss_pred CCCcEEEEEec----CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEE-EecCCCcEEEEEcCC------cee
Q 024185 146 NDGKSMLLTTT----NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGTLHAWNINT------RNE 214 (271)
Q Consensus 146 ~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~------~~~ 214 (271)
|+|++.++... .+.-.+|.+..++.......... ...++|+++++.++ +-+..+.|..+++.. ++.
T Consensus 112 ~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~---~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~ 188 (295)
T d2ghsa1 112 PSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISI---PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKA 188 (295)
T ss_dssp TTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESS---EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCC
T ss_pred CCCCEEEEeccccccccceeEeeecCCcEEEEeeccCC---cceeeecCCCceEEEeecccceeeEeeecccccccccce
Confidence 99986665432 23456677667765554433222 56699999998665 445578899988742 111
Q ss_pred --EEEecCCcceeEEEEEecCCcEEEEe--CCeEEEEcCCCCCCCcCC
Q 024185 215 --VACWNGNIGVVACLKWAPRRAMFVAA--SSVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 215 --~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~v~iw~~~~~~~~~~~ 258 (271)
.....+..+....+++..+|++.++. ++.|..||.+ ++.....
T Consensus 189 ~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i 235 (295)
T d2ghsa1 189 EVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARY 235 (295)
T ss_dssp EEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEE
T ss_pred EEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcEeeEe
Confidence 22233445567889999999977764 3889999965 4444443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.41 E-value=3.1e-06 Score=63.05 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=75.8
Q ss_pred EEEcCC--CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-C-----CeEEEEECCC
Q 024185 96 VAFDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N-----NNIYVLDAYG 167 (271)
Q Consensus 96 ~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d-----~~i~~~d~~~ 167 (271)
+.++|| |+.++..+ +|.|.+.|+.+++ ...+..+.+.....+|||||+.|+.... + ..|.+++..+
T Consensus 4 ~~~sPdi~G~~v~f~~-~~dl~~~d~~~g~-----~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~ 77 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVC-CDDLWEHDLKSGS-----TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN 77 (281)
T ss_dssp CCEEEEEETTEEEEEE-TTEEEEEETTTCC-----EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred cccCCCCCCCEEEEEe-CCcEEEEECCCCC-----EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC
Confidence 346788 99888775 5789999999877 3445566778899999999999987643 2 2488888887
Q ss_pred CeEEEEeecCC----CCCceeeEEECCCCCEEEEecCC------CcEEEEEcCCcee
Q 024185 168 GEKRCGFSLEP----SPNTNTEATFTPDGQYVVSGSGD------GTLHAWNINTRNE 214 (271)
Q Consensus 168 ~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~ 214 (271)
++..+...... .........|+|||+.++..... ..+...+...+..
T Consensus 78 g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (281)
T d1k32a2 78 GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF 134 (281)
T ss_dssp TEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred CceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee
Confidence 77654321110 00124568899999998875332 2355556554443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.38 E-value=4.3e-05 Score=59.41 Aligned_cols=180 Identities=8% Similarity=-0.011 Sum_probs=117.8
Q ss_pred hhhhccCceEEEEEecCcceeEEEecC-----------------------------------------C--cceEEEcC-
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLR-----------------------------------------G--RPTVAFDQ- 100 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------------------------------~--~~~~~~~~- 100 (271)
|.||+..|.++++-+.+++.++.+..- . .+.+++..
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG 95 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 95 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence 678899999999988887766654110 0 12244543
Q ss_pred --CCCEEEEEe-cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC--CCcEEEEEecC------------------
Q 024185 101 --QGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLTTTN------------------ 157 (271)
Q Consensus 101 --~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d------------------ 157 (271)
||+++++.. .+++|.+.|+++.+. .+...+. ....+..+...+ +-.+++..+.+
T Consensus 96 tyDGrylFVNDkan~RVAvIdl~~fkt--~kIi~iP-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~ 172 (459)
T d1fwxa2 96 KYDGRFLFMNDKANTRVARVRCDVMKC--DAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV 172 (459)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEE--EEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred ccceeEEEEEcCCCceEEEEECcceee--eEEEecC-CCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence 788888775 578999999998774 2233332 334567666654 44566666552
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC---------------cEEEE---------------
Q 024185 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG---------------TLHAW--------------- 207 (271)
Q Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~iw--------------- 207 (271)
+.+...|..+.+....+..... ...+.++|+|+++++.+.+. .+.++
T Consensus 173 ~~~t~ID~~tm~V~~QV~V~g~---ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ 249 (459)
T d1fwxa2 173 NVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 249 (459)
T ss_dssp EEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred eEEEEEecCCceEEEEeeeCCC---hhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcE
Confidence 3367889999888877765554 45699999999999876431 13333
Q ss_pred --------EcCCc---eeEEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCC
Q 024185 208 --------NINTR---NEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNP 251 (271)
Q Consensus 208 --------d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~ 251 (271)
|.+.. ..+..++..+ ....+..+|||+++++++ .++.++|++.
T Consensus 250 eingV~VVD~~~~~~~~v~~yIPVpK-sPHGV~vSPDGKyi~VaGKLs~tVSViD~~K 306 (459)
T d1fwxa2 250 ELNGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR 306 (459)
T ss_dssp EETTEEEEECSGG--CSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred EeCCceeecccccCCcceeEEEecCC-CCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence 33321 1222222222 246789999999999997 7799999865
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.26 E-value=0.00039 Score=57.21 Aligned_cols=242 Identities=12% Similarity=0.040 Sum_probs=133.4
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEccccc-ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSK-GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
.+++++..++.++.++..++...... .....+. ..+..--.-.++..++.....-...+|.|+-+|+++|+.+..+..
T Consensus 116 ~~i~~~~~~g~l~alda~tG~~~w~~-~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 194 (571)
T d2ad6a1 116 GQIVKKQANGHLLALDAKTGKINWEV-EVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEE-ECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CeEEEEeCCCcEEeeehhhhhhhccc-cccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence 46777778899999998888543221 1111111 111111111122221110000112478899999999998876642
Q ss_pred C---------------------------------------Ccc-eEEEcCCCCEEEEEec----------------CCeE
Q 024185 91 R---------------------------------------GRP-TVAFDQQGLVFAVAME----------------AGAI 114 (271)
Q Consensus 91 ~---------------------------------------~~~-~~~~~~~~~~l~~~~~----------------d~~i 114 (271)
. .++ ..++.++...++.+.. ...+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv 274 (571)
T d2ad6a1 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI 274 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence 2 111 1567777777666643 2467
Q ss_pred EEEeCCCCCCCcceEEEecC--Cc-------cceEEEEEcCCCc---EEEEEecCCeEEEEECCCCeEEEEeecCCCC--
Q 024185 115 KLFDSRSYDKGPFDTFLVGG--DT-------AEVCDIKFSNDGK---SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-- 180 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~--~~-------~~v~~~~~s~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-- 180 (271)
...|.++++. ...++. |. ..........+++ .++.++.+|.+.++|..+|+.+.........
T Consensus 275 vAld~~TG~~----~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~ 350 (571)
T d2ad6a1 275 WGRDLDTGMA----KWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp EEEETTTCCE----EEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred eeeeccchhh----eecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccc
Confidence 8889998886 333332 11 1111122233443 4567788999999999999877543221100
Q ss_pred -----------------------------------CceeeEEECCCCCEEEEecC-------------------------
Q 024185 181 -----------------------------------NTNTEATFTPDGQYVVSGSG------------------------- 200 (271)
Q Consensus 181 -----------------------------------~~v~~~~~~~~~~~l~~~~~------------------------- 200 (271)
..-...+++|+...++....
T Consensus 351 ~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (571)
T d2ad6a1 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccccccee
Confidence 00012567777666554221
Q ss_pred ------------CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 201 ------------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 201 ------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
.|.|.-+|+.+++.+.+.......... ..+-.+.++++++ +.++.+|.++++.+=+.+
T Consensus 431 ~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g-~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~ 502 (571)
T d2ad6a1 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGG-TLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSB-CEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcc-eeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 146888888888887765422111111 1222355666676 889999999998764443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.08 E-value=0.00071 Score=55.49 Aligned_cols=241 Identities=12% Similarity=0.019 Sum_probs=134.4
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEccccc--c--eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSK--G--IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
..+++...++.++.++..++...-. +.... . .....-.-.++..++..........|.|+-+|.++|+.+..
T Consensus 118 ~~v~~~~~~g~l~Alda~tG~~~w~----~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~ 193 (560)
T d1kv9a2 118 DKVYVGTLDGRLIALDAKTGKAIWS----QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (560)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEE----EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CeEEEEeCCCEEEEEECCCCcEEec----cCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEee
Confidence 4577777788899998888743222 22111 1 01100011122221110011234468899999999998887
Q ss_pred EecC--------------------------------Ccce-EEEcCCCCEEEEEec-------------------CCeEE
Q 024185 88 LRLR--------------------------------GRPT-VAFDQQGLVFAVAME-------------------AGAIK 115 (271)
Q Consensus 88 ~~~~--------------------------------~~~~-~~~~~~~~~l~~~~~-------------------d~~i~ 115 (271)
+..- .++. +++.+...+++.+.. ...|.
T Consensus 194 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~siv 273 (560)
T d1kv9a2 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (560)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred eeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeE
Confidence 7421 1222 677787777665432 23577
Q ss_pred EEeCCCCCCCcceEEEecCCc-------cceEEEEEcCCC---cEEEEEecCCeEEEEECCCCeEEEEeecCCCC-----
Q 024185 116 LFDSRSYDKGPFDTFLVGGDT-------AEVCDIKFSNDG---KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP----- 180 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~~~~~-------~~v~~~~~s~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----- 180 (271)
..|.++++. .-.++...|. ....-.....++ +.++.+..+|.+.++|..+++.+.........
T Consensus 274 Ald~~tG~~--~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~ 351 (560)
T d1kv9a2 274 AIRPDTGKL--AWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKV 351 (560)
T ss_dssp EECTTTCCE--EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEE
T ss_pred EecCCccce--eEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccccc
Confidence 788888875 1122222221 111112222233 35667788999999999999887554321100
Q ss_pred -----------------------------CceeeEEECCCCCEEEEecC-------------------------------
Q 024185 181 -----------------------------NTNTEATFTPDGQYVVSGSG------------------------------- 200 (271)
Q Consensus 181 -----------------------------~~v~~~~~~~~~~~l~~~~~------------------------------- 200 (271)
..-...+++|+...++....
T Consensus 352 d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (560)
T d1kv9a2 352 DLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDV 431 (560)
T ss_dssp CTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCC
T ss_pred ChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCC
Confidence 00113566777766654321
Q ss_pred -----CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 201 -----DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 201 -----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
.|.+.-+|+.+++.+.+.+.. .+..+-..+-.+.+++.++ |.++.+|.++++.+=+.+
T Consensus 432 p~~~~~G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~ 496 (560)
T d1kv9a2 432 PAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (560)
T ss_dssp CGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCcccccceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence 256888999999988776422 1222212233456666776 889999999998764443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.90 E-value=0.0021 Score=49.87 Aligned_cols=184 Identities=11% Similarity=0.053 Sum_probs=113.0
Q ss_pred cCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC---cceEEEcC--CCCEEEEEecC------------------
Q 024185 55 ACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG---RPTVAFDQ--QGLVFAVAMEA------------------ 111 (271)
Q Consensus 55 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~--~~~~l~~~~~d------------------ 111 (271)
+||+++ ++.-..+.+|-+.|+++.+..+.+.... ...+...+ +..+++..+..
T Consensus 97 yDGryl----FVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~ 172 (459)
T d1fwxa2 97 YDGRFL----FMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV 172 (459)
T ss_dssp EEEEEE----EEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred cceeEE----EEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence 377875 4577788999999999998877665432 23355544 45577776652
Q ss_pred CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC----------------------------------
Q 024185 112 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---------------------------------- 157 (271)
Q Consensus 112 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------------------------------- 157 (271)
+.+.+.|..+.+. .....+. +....+.++|+|+++++.+.+
T Consensus 173 ~~~t~ID~~tm~V--~~QV~V~---g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 173 NVFTAVDADKWEV--AWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp EEEEEEETTTTEE--EEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred eEEEEEecCCceE--EEEeeeC---CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 2366788887664 1222222 346678999999999987643
Q ss_pred ----CeEEEEECCCC---eEEEEeecCCCCCceeeEEECCCCCEEEEecC-CCcEEEEEcCCce-----------eEEEe
Q 024185 158 ----NNIYVLDAYGG---EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINTRN-----------EVACW 218 (271)
Q Consensus 158 ----~~i~~~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~-----------~~~~~ 218 (271)
+.+.+-|.++. ..++.+..... ...+..+|||+++++++. +.++.++|++.-. .+..-
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIPVpKs---PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e 324 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIPIANN---PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 324 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEEEESS---CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC
T ss_pred cEEeCCceeecccccCCcceeEEEecCCC---CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee
Confidence 12233333321 12222332333 345899999999987765 8899999986311 11111
Q ss_pred cCCcceeEEEEEecCCcEEEEe--CCeEEEEcCC
Q 024185 219 NGNIGVVACLKWAPRRAMFVAA--SSVLSFWIPN 250 (271)
Q Consensus 219 ~~~~~~v~~~~~s~~~~~l~~~--~~~v~iw~~~ 250 (271)
....-.-...+|+..|+...+- +..|.-|++.
T Consensus 325 ~elglgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 325 PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred cccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence 1122334567888888644443 3889999984
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.79 E-value=0.0048 Score=48.58 Aligned_cols=108 Identities=11% Similarity=-0.047 Sum_probs=66.4
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE-EecCCcceEEEcCCCCEEEEEecC--------------
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI-LRLRGRPTVAFDQQGLVFAVAMEA-------------- 111 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d-------------- 111 (271)
.+....+||++++++...=..|+....++++|+++++.+.. +.......++|.+|++.|+....+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~ 205 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence 34456789999986542112344456899999999986642 333233558999999987765432
Q ss_pred --CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEE
Q 024185 112 --GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 154 (271)
Q Consensus 112 --~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 154 (271)
..|..+.+.+........+........+..+..++++++++..
T Consensus 206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence 2577788776543222222211222346677788899887654
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.72 E-value=0.0082 Score=49.36 Aligned_cols=240 Identities=12% Similarity=-0.035 Sum_probs=132.2
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEccc---ccc-eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFAT---SKG-IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
.++++..++.++.++..++..... +.. +.. .+..--.--++..++...-.-....|.|+-+|.++|+.+..+
T Consensus 123 ~v~~~t~dg~l~Alda~tG~~~w~----~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~ 198 (596)
T d1w6sa_ 123 LILKTQLDGNVAALNAETGETVWK----VENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (596)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEE----EECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EEEEEeCCCCeEeeccccCceecc----ccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEe
Confidence 366677789999999888843322 221 111 111111111222211100111234689999999999998776
Q ss_pred ecC---------------------------------------Ccc-eEEEcCCCCEEEEEec----------------CC
Q 024185 89 RLR---------------------------------------GRP-TVAFDQQGLVFAVAME----------------AG 112 (271)
Q Consensus 89 ~~~---------------------------------------~~~-~~~~~~~~~~l~~~~~----------------d~ 112 (271)
... .+. .+++.+....++.+.. ..
T Consensus 199 ~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~ 278 (596)
T d1w6sa_ 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM 278 (596)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred eccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccc
Confidence 421 011 2566777777766633 23
Q ss_pred eEEEEeCCCCCCCcceEEEecCCc-------cceEEEEE-cCCC---cEEEEEecCCeEEEEECCCCeEEEEeecCCCC-
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDT-------AEVCDIKF-SNDG---KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP- 180 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~-------~~v~~~~~-s~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~- 180 (271)
.+...|+++++. .-.++...|. ....-+.. ..+| +.++....+|.+.++|..+|+.+.........
T Consensus 279 sivAlD~~TG~~--~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~ 356 (596)
T d1w6sa_ 279 TIFGRDADTGEA--KFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN 356 (596)
T ss_dssp EEEEEETTTCCE--EEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred cccccccccccc--cccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccccccc
Confidence 577889999886 1122222222 11111221 2344 35777888999999999999887543321100
Q ss_pred ------------------------------------CceeeEEECCCCCEEEEecC------------------------
Q 024185 181 ------------------------------------NTNTEATFTPDGQYVVSGSG------------------------ 200 (271)
Q Consensus 181 ------------------------------------~~v~~~~~~~~~~~l~~~~~------------------------ 200 (271)
..-...+++|+..+++....
T Consensus 357 ~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~ 436 (596)
T d1w6sa_ 357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATL 436 (596)
T ss_dssp SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccccc
Confidence 00012456666555443211
Q ss_pred ---------------CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 201 ---------------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 201 ---------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
.|.|.-||+.+++.+-.... ..+..+-..+-.|.+++.++ |.++.+|.++++.+=+.+
T Consensus 437 ~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~ 511 (596)
T d1w6sa_ 437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (596)
T ss_dssp EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccCcccCcccCCCcceEEEEeCCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence 15688888888888766532 12222222233566777776 889999999998774443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.72 E-value=0.0039 Score=45.60 Aligned_cols=200 Identities=11% Similarity=0.015 Sum_probs=123.1
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec--CCcceEEEcCCCCEEEEE-ecCCeEEEEeCC
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL--RGRPTVAFDQQGLVFAVA-MEAGAIKLFDSR 120 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~ 120 (271)
+...+..+++.+..+.+ +.+-..++.|+..+++.+.....+.. .....+++..-++.|+.+ ...+.|.+.++.
T Consensus 34 ~~~~~~~ld~D~~~~~i----ywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d 109 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVV----YWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD 109 (263)
T ss_dssp EEEEEEEEEEETTTTEE----EEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCcEEEEEEEeCCCEE----EEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecC
Confidence 34456678888777764 33556678888888876655444433 244568998777777655 456799999987
Q ss_pred CCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec---CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEE
Q 024185 121 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
.... .............++..|...+++.... .+.|.--++..... ..+... .-.....+++++.++.|+.
T Consensus 110 g~~~----~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~i~~~-~~~~P~glaiD~~~~~lYw 183 (263)
T d1npea_ 110 GTQR----RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQD-NLGLPNGLTFDAFSSQLCW 183 (263)
T ss_dssp SCSC----EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECT-TCSCEEEEEEETTTTEEEE
T ss_pred CceE----EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-eeeeee-cccccceEEEeecCcEEEE
Confidence 6553 2223333466889999997666665432 23455556543332 222222 2123678999988887766
Q ss_pred e-cCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEe-C-CeEEEEcCCCCCCC
Q 024185 198 G-SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA-S-SVLSFWIPNPSSNS 255 (271)
Q Consensus 198 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~-~~v~iw~~~~~~~~ 255 (271)
+ ...+.|...|+........+.+... ..++++. ++.+..+- . +.|...|..+++..
T Consensus 184 ~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~ 242 (263)
T d1npea_ 184 VDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM 242 (263)
T ss_dssp EETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred EeCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEE-CCEEEEEECCCCEEEEEECCCCccc
Confidence 5 4567899999865544444444333 3577776 34333442 2 77888888776643
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=0.0058 Score=44.74 Aligned_cols=181 Identities=9% Similarity=-0.034 Sum_probs=109.7
Q ss_pred CceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEe-cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC
Q 024185 71 ALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 148 (271)
...|+-.++++.+....+... .+..++|++.++.++... ..+.|.-.++...................+..+++.+-+
T Consensus 9 ~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~ 88 (266)
T d1ijqa1 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (266)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence 345888888776544444333 344588998888777764 456677666654221111122233333557788988766
Q ss_pred cEEEEE-ecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec--CCCcEEEEEcCCceeEEEecCCccee
Q 024185 149 KSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS--GDGTLHAWNINTRNEVACWNGNIGVV 225 (271)
Q Consensus 149 ~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v 225 (271)
..|+.+ ...++|.+.++........+..... ....++++|...+++... ..+.|.-.++............-...
T Consensus 89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~--~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p 166 (266)
T d1ijqa1 89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 166 (266)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTC--CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred ceEEEEecCCCEEEeEecCCceEEEEEcCCCC--CcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccccccee
Confidence 656555 4567899999876654444433333 377899999766666543 34567777775443333333333556
Q ss_pred EEEEEecCCcEEEEeC---CeEEEEcCCCCC
Q 024185 226 ACLKWAPRRAMFVAAS---SVLSFWIPNPSS 253 (271)
Q Consensus 226 ~~~~~s~~~~~l~~~~---~~v~iw~~~~~~ 253 (271)
.++++.+.++.|..+. +.|...++.+..
T Consensus 167 ~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~ 197 (266)
T d1ijqa1 167 NGITLDLLSGRLYWVDSKLHSISSIDVNGGN 197 (266)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred eEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence 8999999877666664 678888887654
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.54 E-value=0.0078 Score=44.28 Aligned_cols=205 Identities=8% Similarity=0.038 Sum_probs=122.6
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC-cceeEEEec
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML-ASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~ 90 (271)
++++.-.++..+..++.... ..++.+.-.+..+.--..+++--. +++ +..|+-|+++. ..+.+.+..
T Consensus 74 ~~IiALrag~~LQiFnletK----~klks~~~~e~VvfWkWis~~~L~-----lVT---~taVYHW~~~g~s~P~k~fdR 141 (327)
T d1utca2 74 SKVIALKAGKTLQIFNIEMK----SKMKAHTMTDDVTFWKWISLNTVA-----LVT---DNAVYHWSMEGESQPVKMFDR 141 (327)
T ss_dssp SSEEEEEETTEEEEEETTTT----EEEEEEECSSCCCEEEESSSSEEE-----EEC---SSEEEEEESSSSCCCEEEEEC
T ss_pred CcEEEEecCCeEEEEehhHh----hhhceEEcCCCcEEEEecCCCEEE-----EEc---CCceEEEcccCCCCchhhhhh
Confidence 34444444556666666555 444445555555443344443222 333 44699999954 346777766
Q ss_pred CC----cce--EEEcCCCCEEEEEe---c----CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC---cEEEEE
Q 024185 91 RG----RPT--VAFDQQGLVFAVAM---E----AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG---KSMLLT 154 (271)
Q Consensus 91 ~~----~~~--~~~~~~~~~l~~~~---~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~ 154 (271)
|. ... ...++++++++..+ . .|.+.+|..+... ...++||.+....+...-+. +.++.+
T Consensus 142 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-----sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa 216 (327)
T d1utca2 142 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-----SQPIEGHAASFAQFKMEGNAEESTLFCFA 216 (327)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-----EEEECCSEEEEEEECCTTCSSCEEEEEEE
T ss_pred cccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-----CccccceeeeeEEEEcCCCCCCceEEEEE
Confidence 63 122 55678888776542 2 3678899988755 56678888777666554322 334444
Q ss_pred ec---CCeEEEEECCCCe---E-----EEEe--ecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC
Q 024185 155 TT---NNNIYVLDAYGGE---K-----RCGF--SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN 221 (271)
Q Consensus 155 ~~---d~~i~~~d~~~~~---~-----~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 221 (271)
.. .+++++.++.... . ...+ ..........++..++.-..++.-+.-|.+++||+.++.++..-+-.
T Consensus 217 ~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs 296 (327)
T d1utca2 217 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 296 (327)
T ss_dssp EEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred ECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecC
Confidence 32 3678888885421 1 1111 11111234556788888788888999999999999999998876555
Q ss_pred cceeEEEEEecC
Q 024185 222 IGVVACLKWAPR 233 (271)
Q Consensus 222 ~~~v~~~~~s~~ 233 (271)
...|...+-+.+
T Consensus 297 ~~~iF~~a~~~~ 308 (327)
T d1utca2 297 GETIFVTAPHEA 308 (327)
T ss_dssp SSCEEEEEEETT
T ss_pred CCceEEeccCCC
Confidence 556654444443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.47 E-value=0.013 Score=47.77 Aligned_cols=163 Identities=11% Similarity=0.130 Sum_probs=100.0
Q ss_pred ceEEEEEecCcceeEEEec--CCcc--------e-EEEcCCC---CEEEEEecCCeEEEEeCCCCCCCcceEEEecC---
Q 024185 72 LEYGIFVLMLASFQGILRL--RGRP--------T-VAFDQQG---LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG--- 134 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~--~~~~--------~-~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--- 134 (271)
..|.-.|+++++....++. |... . ..+..++ ..++.+..+|.++++|..+++. +.......
T Consensus 270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~--i~~~~~~~~~~ 347 (560)
T d1kv9a2 270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL--ISAEKFGKVTW 347 (560)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE--EEEEESSCCCS
T ss_pred eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcc--ccccccccccc
Confidence 4566678889988776653 2211 1 2333344 3566778899999999998875 11111100
Q ss_pred -----------------------------Ccc--ceEEEEEcCCCcEEEEEec---------------------------
Q 024185 135 -----------------------------DTA--EVCDIKFSNDGKSMLLTTT--------------------------- 156 (271)
Q Consensus 135 -----------------------------~~~--~v~~~~~s~~~~~l~~~~~--------------------------- 156 (271)
-.+ .-...+++|+...++....
T Consensus 348 ~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (560)
T d1kv9a2 348 AEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFAD 427 (560)
T ss_dssp EEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGG
T ss_pred ccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccc
Confidence 000 0113466777666665432
Q ss_pred ---------CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcce-eE
Q 024185 157 ---------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV-VA 226 (271)
Q Consensus 157 ---------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~ 226 (271)
.|.+.-+|+.+++.+.++..... ...-.++..+.+++.|+.||.++.+|.++|+.+.+++-.... -.
T Consensus 428 ~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~---~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~ 504 (560)
T d1kv9a2 428 ATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAA 504 (560)
T ss_dssp CCCCCGGGCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred ccCCCCcccccceEEEeCCCCeEeeeccCCCC---CCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCcccc
Confidence 25688899999998887664432 212223345668888999999999999999999887543221 11
Q ss_pred EEEEecCCc-EEEE
Q 024185 227 CLKWAPRRA-MFVA 239 (271)
Q Consensus 227 ~~~~s~~~~-~l~~ 239 (271)
-+.+..+|+ |++.
T Consensus 505 P~ty~~dGkqyv~v 518 (560)
T d1kv9a2 505 PMTFELAGRQYVAI 518 (560)
T ss_dssp CEEEEETTEEEEEE
T ss_pred CEEEEECCEEEEEE
Confidence 255667886 4443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.44 E-value=0.02 Score=46.71 Aligned_cols=244 Identities=13% Similarity=0.027 Sum_probs=130.9
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEE--eeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRR--GLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
+.++++..++.+..++..++...-. .....+....+. ..-.-.++..++..........|.|+-+|.++|+.+..+.
T Consensus 129 ~~v~~~t~~g~l~alda~tG~~~W~-~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 207 (573)
T d1kb0a2 129 GKVYVGAWDGRLIALDAATGKEVWH-QNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (573)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEE-EETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CcEEEEecccceeeeccccccceec-ccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeee
Confidence 4566777788888888877743211 011111111111 1011112222111001123446889999999999887763
Q ss_pred cC---------------------------------Ccc-eEEEcCCCCEEEEEec-------------------CCeEEE
Q 024185 90 LR---------------------------------GRP-TVAFDQQGLVFAVAME-------------------AGAIKL 116 (271)
Q Consensus 90 ~~---------------------------------~~~-~~~~~~~~~~l~~~~~-------------------d~~i~i 116 (271)
.. .++ ..++.++...++.+.. ...|..
T Consensus 208 t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvA 287 (573)
T d1kb0a2 208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA 287 (573)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred eccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEE
Confidence 21 011 2566676666655421 124667
Q ss_pred EeCCCCCCCcceEEEecCCc-------cceEEEEEcCCC---cEEEEEecCCeEEEEECCCCeEEEEeecCCCC------
Q 024185 117 FDSRSYDKGPFDTFLVGGDT-------AEVCDIKFSNDG---KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP------ 180 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~-------~~v~~~~~s~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~------ 180 (271)
.|.++++. .-.++...|. .+........++ ..++.++.+|.+..+|..+++.+.........
T Consensus 288 ld~~tG~~--~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~ 365 (573)
T d1kb0a2 288 LDPDTGKY--KWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD 365 (573)
T ss_dssp ECTTTCCE--EEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred ecccchhe--eecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccc
Confidence 77777775 1111111111 112222222333 35667788999999999999887654321100
Q ss_pred ---------------------------CceeeEEECCCCCEEEEecCC--------------------------------
Q 024185 181 ---------------------------NTNTEATFTPDGQYVVSGSGD-------------------------------- 201 (271)
Q Consensus 181 ---------------------------~~v~~~~~~~~~~~l~~~~~d-------------------------------- 201 (271)
..-...+++|+...++....+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 445 (573)
T d1kb0a2 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF 445 (573)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred cccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccc
Confidence 001124677776655542111
Q ss_pred -----------CcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 202 -----------GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 202 -----------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
|.+.-||+.+++.+-+.+... +..+=..+-.+.++++++ +.++.+|.++++.+=+.+
T Consensus 446 ~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~ 515 (573)
T d1kb0a2 446 FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (573)
T ss_dssp ECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cccCCCCCCCcccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence 357888999998887764322 111112233566777776 889999999998875443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.42 E-value=0.0051 Score=50.39 Aligned_cols=168 Identities=13% Similarity=0.104 Sum_probs=95.8
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCC-------------------------------------cceEEEcCCCCEEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRG-------------------------------------RPTVAFDQQGLVFAV 107 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~l~~ 107 (271)
++.++.+|.+.++|.++|+.+...+... -...+++|+...++.
T Consensus 330 v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv 409 (573)
T d1kb0a2 330 ILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYL 409 (573)
T ss_dssp EEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEE
T ss_pred eeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEe
Confidence 6678899999999999998765442210 012567787777777
Q ss_pred EecCCeEEEEeCCCCCCCcceEEEecCCcc-ceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeE
Q 024185 108 AMEAGAIKLFDSRSYDKGPFDTFLVGGDTA-EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA 186 (271)
Q Consensus 108 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~ 186 (271)
...+....+......+... ........+ ......+. .+. -.....-|.+.-||+.+++.+.+....... ..-
T Consensus 410 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~-~~~-p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~---~gg 482 (573)
T d1kb0a2 410 PAQNVPVNLMDDKKWEFNQ--AGPGKPQSGTGWNTAKFF-NAE-PPKSKPFGRLLAWDPVAQKAAWSVEHVSPW---NGG 482 (573)
T ss_dssp EEEECCCEEEECTTCCTTC--CCTTSTTGGGTCCCCEEE-CSS-CCCSCCEEEEEEEETTTTEEEEEEEESSSC---CCC
T ss_pred eccccceeeeccccccccc--CCCCcccccccccccccc-ccC-CCCCCCcccEEEeCCCCCceEeeecCCCCC---CCc
Confidence 7666655555544332100 000000000 00000000 000 000011257889999999998877654321 112
Q ss_pred EECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCccee-EEEEEecCCc-EEEE
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVV-ACLKWAPRRA-MFVA 239 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~-~l~~ 239 (271)
..+..+..++.|+.||.++.+|.++|+.+.+++...+.. .-+.|..||+ |++.
T Consensus 483 ~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v 537 (573)
T d1kb0a2 483 TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (573)
T ss_dssp EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred eEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence 234467788899999999999999999998875432211 1255666887 4433
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.36 E-value=0.02 Score=46.74 Aligned_cols=163 Identities=10% Similarity=-0.004 Sum_probs=98.5
Q ss_pred ceEEEEEecCcceeEEEecC--Ccc---------eEEEcCCCC---EEEEEecCCeEEEEeCCCCCCCcceEEEecC---
Q 024185 72 LEYGIFVLMLASFQGILRLR--GRP---------TVAFDQQGL---VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG--- 134 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~--~~~---------~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--- 134 (271)
..+.-.|.++|+.+..++.. ... ...+..+++ .++.++.+|.++++|.++++. +.......
T Consensus 272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~--i~~~~~~~~~~ 349 (571)
T d2ad6a1 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL--IVAEKVDPAVN 349 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE--EEEEESSTTCC
T ss_pred cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcE--eeeeccCCccc
Confidence 45777899999988777642 111 123333453 456778899999999998874 11111100
Q ss_pred --------------------------------Cccc--eEEEEEcCCCcEEEEEecC-----------------------
Q 024185 135 --------------------------------DTAE--VCDIKFSNDGKSMLLTTTN----------------------- 157 (271)
Q Consensus 135 --------------------------------~~~~--v~~~~~s~~~~~l~~~~~d----------------------- 157 (271)
..+. -...+++|+...++....+
T Consensus 350 ~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (571)
T d2ad6a1 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccce
Confidence 0000 0124677776666554322
Q ss_pred --------------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcc
Q 024185 158 --------------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG 223 (271)
Q Consensus 158 --------------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 223 (271)
|.|.-+|+.+++.+.+....... .+-.++..+.+++.|+.||.++.+|.++|+.+.+++-...
T Consensus 430 ~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~---~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~ 506 (571)
T d2ad6a1 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAA---WGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG 506 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCC---CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eeccccCCcccCCcccEEEeccCCCceeeEcCCCCCC---CcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCC
Confidence 46888888888887766533221 1111223456788899999999999999999988753321
Q ss_pred -eeEEEEEecCCc-EEEE
Q 024185 224 -VVACLKWAPRRA-MFVA 239 (271)
Q Consensus 224 -~v~~~~~s~~~~-~l~~ 239 (271)
.-.-+.|..||+ |+++
T Consensus 507 ~~a~P~ty~~dGkqYi~v 524 (571)
T d2ad6a1 507 GIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp CCSCCEEEEETTEEEEEE
T ss_pred ceecceEEEECCEEEEEE
Confidence 112356677887 4543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.33 E-value=0.007 Score=49.68 Aligned_cols=80 Identities=15% Similarity=0.298 Sum_probs=56.0
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcce-eEEEEEecCCc
Q 024185 157 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV-VACLKWAPRRA 235 (271)
Q Consensus 157 d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~ 235 (271)
.|.+.-+|+.+++.+.+...... +..-..+..+..++.|+.||.++.+|.++|+.+.+++-.... -.-+.|..+|+
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p---~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~ 541 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLP---LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC---CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCeEEEEcCCCCcEEeecCCCCC---CccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence 36789999999998887765432 222223456678888999999999999999999888543221 12266778886
Q ss_pred -EEEE
Q 024185 236 -MFVA 239 (271)
Q Consensus 236 -~l~~ 239 (271)
|++.
T Consensus 542 qYv~i 546 (582)
T d1flga_ 542 QYLGV 546 (582)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 4443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.30 E-value=0.015 Score=42.28 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=98.0
Q ss_pred cceEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEE-ecCCeEEEEECCCCeE
Q 024185 93 RPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEK 170 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~ 170 (271)
+..++|.+..+.++.+ ..++.|+..++..... ...+......+..+++..-+..|+.+ ...+.|.+.++.....
T Consensus 38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~----~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~ 113 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP----TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCC----EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc----EEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence 4458898888877776 4557898888876654 33333333568899998755556544 4578999999875543
Q ss_pred EEEeecCCCCCceeeEEECCCCCEEEEecCC---CcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC---CeE
Q 024185 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVL 244 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v 244 (271)
...+... ......++++|...+++..... ..|.--++............-....++++.+.++.|..++ +.|
T Consensus 114 ~~l~~~~--l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I 191 (263)
T d1npea_ 114 RVLFDTG--LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA 191 (263)
T ss_dssp EEEECSS--CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEeccc--ccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEE
Confidence 2222222 2347889999988777755332 2355556644333333333334568999998877665553 678
Q ss_pred EEEcCCCCC
Q 024185 245 SFWIPNPSS 253 (271)
Q Consensus 245 ~iw~~~~~~ 253 (271)
...+++...
T Consensus 192 ~~~~~~g~~ 200 (263)
T d1npea_ 192 ECLNPAQPG 200 (263)
T ss_dssp EEEETTEEE
T ss_pred EEEECCCCC
Confidence 888886643
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.018 Score=41.97 Aligned_cols=199 Identities=11% Similarity=-0.087 Sum_probs=115.7
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc---eeEEEec---CCcceEEEcCCCCEEEEE-ecCCeEEEE
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS---FQGILRL---RGRPTVAFDQQGLVFAVA-MEAGAIKLF 117 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~---~~~~~~~~~~~~~~l~~~-~~d~~i~i~ 117 (271)
...+..+.+.+..+.++. +-..++.|+-.+++... ....+.. .....+++.+.++.|+.+ ...+.|.+.
T Consensus 29 ~~~~~~id~d~~~~~lYw----~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~ 104 (266)
T d1ijqa1 29 LRNVVALDTEVASNRIYW----SDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 104 (266)
T ss_dssp CSSEEEEEEETTTTEEEE----EETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEEEEeCCCEEEE----EECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeE
Confidence 344556888887766422 44455666666654321 1122211 234558998877767766 455789999
Q ss_pred eCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe--cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEE
Q 024185 118 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV 195 (271)
Q Consensus 118 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 195 (271)
++..... ...+.........++..|...+++... ..+.|.-.++..... ..+.... -.....+++++.++.|
T Consensus 105 ~~~g~~~----~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~-~~l~~~~-~~~p~gl~iD~~~~~l 178 (266)
T d1ijqa1 105 DTKGVKR----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTEN-IQWPNGITLDLLSGRL 178 (266)
T ss_dssp ETTSSSE----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSS-CSCEEEEEEETTTTEE
T ss_pred ecCCceE----EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce-ecccccc-cceeeEEEeeccccEE
Confidence 9886553 333334456688999999655555443 345677777754433 3332221 1336789999988877
Q ss_pred EEe-cCCCcEEEEEcCCceeEEEecC--CcceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCCC
Q 024185 196 VSG-SGDGTLHAWNINTRNEVACWNG--NIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNS 255 (271)
Q Consensus 196 ~~~-~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~~ 255 (271)
+.+ ...+.|...++........... ......++++. +..|..++ +.|.-.+..++...
T Consensus 179 Yw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~ 242 (266)
T d1ijqa1 179 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV 242 (266)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred EEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcce
Confidence 766 4467899999865443333222 22234567776 33444443 67777777666543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.08 E-value=0.034 Score=42.07 Aligned_cols=158 Identities=9% Similarity=0.065 Sum_probs=89.2
Q ss_pred ceEEEcCCCCEEEEEec------------CCeEEEEeCCCCCCCcceEEEecCCc----cceEEEEE--cCCCcE-EEEE
Q 024185 94 PTVAFDQQGLVFAVAME------------AGAIKLFDSRSYDKGPFDTFLVGGDT----AEVCDIKF--SNDGKS-MLLT 154 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~------------d~~i~i~d~~~~~~~~~~~~~~~~~~----~~v~~~~~--s~~~~~-l~~~ 154 (271)
..++..|+|..+++++. .|.+.++|+.+.+..........+.. -....+.. .++|+. |++.
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv 117 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 117 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence 34777788776665532 48999999987654222221111110 12233333 456653 4444
Q ss_pred e---cCCeEEEEECCCC--eEEE--EeecCCCCCceeeEEECCCCCEEEEec--C-------------CCcEEEEEcCCc
Q 024185 155 T---TNNNIYVLDAYGG--EKRC--GFSLEPSPNTNTEATFTPDGQYVVSGS--G-------------DGTLHAWNINTR 212 (271)
Q Consensus 155 ~---~d~~i~~~d~~~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~--~-------------dg~i~iwd~~~~ 212 (271)
. ...+|.+|++... +... ++. +........+....++.++++-. . -+.-.+|....+
T Consensus 118 nH~~~~~~ieif~~~~~~~~l~~~~~v~-~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~ 196 (340)
T d1v04a_ 118 NHPGSSSTVEVFKFQEEEKSLLHLKTIR-HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 196 (340)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEEC-CTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred eccCCCceeEEEEEeCCCCeEEEEeecC-CccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence 3 3567888887533 2222 222 22224477888888998888721 1 123344444444
Q ss_pred eeEEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCCCC
Q 024185 213 NEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSS 253 (271)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~ 253 (271)
+...... .-...+.++++||+++|+.+. +.|+.|++....
T Consensus 197 ~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 197 DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp CEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred ceEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 4332233 234468999999999887775 789999987543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.93 E-value=0.051 Score=41.44 Aligned_cols=117 Identities=9% Similarity=0.016 Sum_probs=77.2
Q ss_pred EEEcCCCCEEEEEecCC-----------eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC-CeEEEE
Q 024185 96 VAFDQQGLVFAVAMEAG-----------AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-NNIYVL 163 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~i~~~ 163 (271)
.....+|+.++.|+.+. .+.+||..+++........ ..+.......++.++|+.++.|+.+ ..+.+|
T Consensus 25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~y 103 (387)
T d1k3ia3 25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-TKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY 103 (387)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-CSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCC-CCcccceeEEEEecCCcEEEeecCCCcceeEe
Confidence 44556888888877421 3779999988753332222 2233334566788999988888664 579999
Q ss_pred ECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC------CcEEEEEcCCcee
Q 024185 164 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD------GTLHAWNINTRNE 214 (271)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~ 214 (271)
|..+.+-... ........-...+..+||+.++.|+.+ ..+.+||..+.+-
T Consensus 104 d~~~~~w~~~-~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 104 DSSSDSWIPG-PDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp EGGGTEEEEC-CCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred cCccCccccc-ccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence 9988765432 222222233457778899999988753 3689999987654
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.89 E-value=0.056 Score=41.36 Aligned_cols=179 Identities=12% Similarity=0.024 Sum_probs=98.2
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC-----------cceeEEEecCCcceEEEcCCCCEEEEEecCCe
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML-----------ASFQGILRLRGRPTVAFDQQGLVFAVAMEAGA 113 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 113 (271)
....+-+++++...+ ++.|+.++ +++..++. ...........+..++|+.+ .+++.. ++.
T Consensus 36 ~~~~~LLAVsn~~GL-----l~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~~-~~~ 106 (381)
T d1xipa_ 36 FASLQNLDISNSKSL-----FVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVST-RNA 106 (381)
T ss_dssp SSCCBCEEEETTTTE-----EEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEEE-SSE
T ss_pred ccccceEEEeCCCCE-----EEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEEe-CCC
Confidence 345667888887776 55666665 55665421 11222223334556888754 455544 567
Q ss_pred EEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeec---CCCCCceeeEEECC
Q 024185 114 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL---EPSPNTNTEATFTP 190 (271)
Q Consensus 114 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~~~v~~~~~~~ 190 (271)
+..++...-.. ......-..++..+.++|. .++....++.+.++++.+++......+ -.-.....+++|++
T Consensus 107 l~~~~~~~l~~----~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~ 180 (381)
T d1xipa_ 107 LYSLDLEELSE----FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKD 180 (381)
T ss_dssp EEEEESSSTTC----EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETT
T ss_pred EEEEEeecccc----ccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeC
Confidence 88888776443 2222223456888888875 466777789999999988764332110 00012377788888
Q ss_pred CCCEEEEecCCCcEEEE-EcCCceeEEEecCCcceeEEEEEecCCcEEEE
Q 024185 191 DGQYVVSGSGDGTLHAW-NINTRNEVACWNGNIGVVACLKWAPRRAMFVA 239 (271)
Q Consensus 191 ~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 239 (271)
.|+.++++..++ ..+- ++.....+..-......|.++.|-.+..++++
T Consensus 181 kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 181 RSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 229 (381)
T ss_dssp SCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEE
Confidence 888777764321 1110 11111100000112345778888766555543
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.87 E-value=0.054 Score=40.98 Aligned_cols=180 Identities=12% Similarity=0.132 Sum_probs=105.3
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcceEE------EcCCCCEEEEEec--C--CeEEEEeCCCCCCCcceEEEecC
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPTVA------FDQQGLVFAVAME--A--GAIKLFDSRSYDKGPFDTFLVGG 134 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~ 134 (271)
++.....+-+++||+ .|+.++.+.....+-+. +.....-+++++. + .+|.+|.+..... ....+..
T Consensus 43 I~gTdK~~Gl~vYdL-~G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~---~l~~~~~ 118 (353)
T d1h6la_ 43 LITTNKKSGLAVYSL-EGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG---TLQSITD 118 (353)
T ss_dssp EEEEETTSCCEEEET-TCCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT---EEEECSC
T ss_pred EEEEcCcCCEEEEcC-CCcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc---ccccccc
Confidence 334456666999999 58888887765544332 2222333555542 1 3677787653221 0111111
Q ss_pred -------CccceEEEEE--cCC-Cc-EEEEEecCCeEEEEECC---CC----eEEEEeecCCCCCceeeEEECCCCCEEE
Q 024185 135 -------DTAEVCDIKF--SND-GK-SMLLTTTNNNIYVLDAY---GG----EKRCGFSLEPSPNTNTEATFTPDGQYVV 196 (271)
Q Consensus 135 -------~~~~v~~~~~--s~~-~~-~l~~~~~d~~i~~~d~~---~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 196 (271)
....+..+++ +|. |. ++++...+|.+..|.+. .+ +.++.+.... .+..+.+++....|+
T Consensus 119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~---q~EGCVvDde~~~Ly 195 (353)
T d1h6la_ 119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNS---QTEGMAADDEYGSLY 195 (353)
T ss_dssp SSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSS---CEEEEEEETTTTEEE
T ss_pred cccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCC---ccceEEEeCCCCcEE
Confidence 1123555665 664 54 45566678999888763 23 3445555433 488899999988999
Q ss_pred EecCCCcEEEEEcCC-----ceeEEEecC--CcceeEEEEEec--CCc-EEEEeC---CeEEEEcCCC
Q 024185 197 SGSGDGTLHAWNINT-----RNEVACWNG--NIGVVACLKWAP--RRA-MFVAAS---SVLSFWIPNP 251 (271)
Q Consensus 197 ~~~~dg~i~iwd~~~-----~~~~~~~~~--~~~~v~~~~~s~--~~~-~l~~~~---~~v~iw~~~~ 251 (271)
.+-++.-++.++... +..+....+ ..+.+..++.-. ++. +|++++ ++..+||..+
T Consensus 196 isEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~ 263 (353)
T d1h6la_ 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG 263 (353)
T ss_dssp EEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence 998877666666531 223333322 345677887654 333 666654 7799999876
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.64 E-value=0.071 Score=39.11 Aligned_cols=171 Identities=14% Similarity=0.140 Sum_probs=107.1
Q ss_pred ceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEE
Q 024185 72 LEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM 151 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 151 (271)
..+.+.|+.++.....-+. ..-+.-++|..+.||.-+ ..++.++|+++.++ +....+ ..+|.--.|-.+. .|
T Consensus 45 ~~VvIidl~n~~~~~Rrpi-~AdsAIMhP~~~IiALra-g~~LQiFnletK~k--lks~~~---~e~VvfWkWis~~-~L 116 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRPI-SADSAIMNPASKVIALKA-GKTLQIFNIEMKSK--MKAHTM---TDDVTFWKWISLN-TV 116 (327)
T ss_dssp EEEEEEETTSTTSCEEEEC-CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEE--EEEEEC---SSCCCEEEESSSS-EE
T ss_pred ceEEEEECCCCCcceeccc-chhhhhcCCCCcEEEEec-CCeEEEEehhHhhh--hceEEc---CCCcEEEEecCCC-EE
Confidence 4566666655443222111 233456789999888776 56899999998775 333333 2467777887664 45
Q ss_pred EEEecCCeEEEEECCCC-eEEEEeecCCC--CCceeeEEECCCCCEEEEec---C----CCcEEEEEcCCceeEEEecCC
Q 024185 152 LLTTTNNNIYVLDAYGG-EKRCGFSLEPS--PNTNTEATFTPDGQYVVSGS---G----DGTLHAWNINTRNEVACWNGN 221 (271)
Q Consensus 152 ~~~~~d~~i~~~d~~~~-~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~---~----dg~i~iwd~~~~~~~~~~~~~ 221 (271)
+..+ +..|+-|+++.. ++.+.+..+.. ...|..-..+++.+|++..+ . .|.+.+|..+ .+.-+.+++|
T Consensus 117 ~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e-r~~sQ~ieGh 194 (327)
T d1utca2 117 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGH 194 (327)
T ss_dssp EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-TTEEEEECCS
T ss_pred EEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec-cCcCccccce
Confidence 5554 447999999542 44555544432 25687788899999987543 2 3678899875 4555778888
Q ss_pred cceeEEEEEecCC---cEEEEeC-----CeEEEEcCCCC
Q 024185 222 IGVVACLKWAPRR---AMFVAAS-----SVLSFWIPNPS 252 (271)
Q Consensus 222 ~~~v~~~~~s~~~---~~l~~~~-----~~v~iw~~~~~ 252 (271)
.+.-..+....+. .+++.+. +++++-++...
T Consensus 195 aa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~ 233 (327)
T d1utca2 195 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 233 (327)
T ss_dssp EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCC
T ss_pred eeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCC
Confidence 7655555443221 2444442 57888888653
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.60 E-value=0.021 Score=43.76 Aligned_cols=114 Identities=10% Similarity=0.060 Sum_probs=72.9
Q ss_pred eEEEEEcCCCcEEEEEecC-----C------eEEEEECCCCeEEEE--eecCCCCCceeeEEECCCCCEEEEecCC-CcE
Q 024185 139 VCDIKFSNDGKSMLLTTTN-----N------NIYVLDAYGGEKRCG--FSLEPSPNTNTEATFTPDGQYVVSGSGD-GTL 204 (271)
Q Consensus 139 v~~~~~s~~~~~l~~~~~d-----~------~i~~~d~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i 204 (271)
+.......+|+.++.|+.+ + .+.+||..+++-... ...... ......++.++|++++.|+.+ ..+
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~-~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD-MFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC-CSSCEEEECTTSCEEEECSSSTTCE
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcc-cceeEEEEecCCcEEEeecCCCcce
Confidence 3344455678888887742 1 377899988754322 221111 224456788999999998765 589
Q ss_pred EEEEcCCceeEEEecCC-cceeEEEEEecCCcEEEEeC--------CeEEEEcCCCCC
Q 024185 205 HAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAAS--------SVLSFWIPNPSS 253 (271)
Q Consensus 205 ~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~--------~~v~iw~~~~~~ 253 (271)
.+||..+..-...-... ...-...+..+||++++.++ .++.+||+.+.+
T Consensus 101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 99999876654321111 11224567788999988885 358999988764
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.53 E-value=0.017 Score=45.31 Aligned_cols=97 Identities=20% Similarity=0.306 Sum_probs=63.4
Q ss_pred EEEcCCCCEEEEEe-cCC----eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC-------------
Q 024185 96 VAFDQQGLVFAVAM-EAG----AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN------------- 157 (271)
Q Consensus 96 ~~~~~~~~~l~~~~-~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------- 157 (271)
.+++||+++++.+- .+| .++++|+.+++. ....+. ......++|++|++.|+....+
T Consensus 130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~---~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE---LPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE---EEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred eEecCCCCEEEEEeccccCchheeEEeccCccee---cccccc--cccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence 67899999988763 333 799999999874 112221 1223568999999988765432
Q ss_pred ---CeEEEEECCCCeE--EEEeecCCCCCceeeEEECCCCCEEEE
Q 024185 158 ---NNIYVLDAYGGEK--RCGFSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 158 ---~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
..+..+.+.+... ...+........+..+..++++++++.
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i 249 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL 249 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence 2588888776533 233333333345667788999998864
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.45 E-value=0.17 Score=41.28 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=51.6
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcc-eeEEEEEecCCc-
Q 024185 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG-VVACLKWAPRRA- 235 (271)
Q Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~- 235 (271)
|.+.-||+.+++.+.+...... ...-.++..|.+++.|+.||.++.+|.++|+.+.+++...+ .-.-+.|..||+
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~~---~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQ 529 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERFA---VWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred ceEEEEeCCCCceecccCCCCC---CccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEE
Confidence 5688888888888766543322 12222334567888899999999999999999988753321 112245566886
Q ss_pred EEE
Q 024185 236 MFV 238 (271)
Q Consensus 236 ~l~ 238 (271)
|++
T Consensus 530 Yva 532 (596)
T d1w6sa_ 530 YVA 532 (596)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.25 E-value=0.15 Score=38.43 Aligned_cols=164 Identities=12% Similarity=0.063 Sum_probs=90.3
Q ss_pred CceEEEEEecCccee-EEE--ecCC-------cceEEE--cCCCC-EEEEEe---cCCeEEEEeCCCCCCCcceEEEecC
Q 024185 71 ALEYGIFVLMLASFQ-GIL--RLRG-------RPTVAF--DQQGL-VFAVAM---EAGAIKLFDSRSYDKGPFDTFLVGG 134 (271)
Q Consensus 71 dg~i~iwd~~~~~~~-~~~--~~~~-------~~~~~~--~~~~~-~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~ 134 (271)
.|.+.++|+++.+.. ..+ .+.. ..-+.+ .++++ +|++.. ...+|.++++............+..
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~ 146 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 146 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence 489999998765422 122 1111 111333 45665 455543 3567888888655432222222222
Q ss_pred -CccceEEEEEcCCCcEEEEEec-----------------CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEE
Q 024185 135 -DTAEVCDIKFSNDGKSMLLTTT-----------------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 196 (271)
Q Consensus 135 -~~~~v~~~~~s~~~~~l~~~~~-----------------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 196 (271)
......++++..++.++++-.. -+.+.-|| .++.......- .....++++||+++++
T Consensus 147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~--~~~~~~~~~~l---~~pNGI~~s~d~~~ly 221 (340)
T d1v04a_ 147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS--PNDVRVVAEGF---DFANGINISPDGKYVY 221 (340)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC--SSCEEEEEEEE---SSEEEEEECTTSSEEE
T ss_pred ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc--CCceEEEcCCC---CccceeEECCCCCEEE
Confidence 2245788999999987777321 13344444 33332222222 2367799999998776
Q ss_pred Ee-cCCCcEEEEEcCCceeEE---EecCCcceeEEEEEec-CCcEEEEe
Q 024185 197 SG-SGDGTLHAWNINTRNEVA---CWNGNIGVVACLKWAP-RRAMFVAA 240 (271)
Q Consensus 197 ~~-~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~s~-~~~~l~~~ 240 (271)
.+ +..+.|+.|++.....+. ... -.+..-.+.+.+ +|.+.+.+
T Consensus 222 Va~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 222 IAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEE
Confidence 65 446789999987543322 222 234456788876 45555554
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.61 E-value=0.36 Score=37.74 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=37.2
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEe------cCCccceEEEEEcCC
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV------GGDTAEVCDIKFSND 147 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~ 147 (271)
..+.++|.||++.+++--..|.|++++..+++... ...+ ..-......++++|+
T Consensus 28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~--i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEee--cccCCccccccCCCCceeeEEeCCC
Confidence 45679999999977766557999999887766411 1111 112356789999995
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.30 E-value=0.56 Score=37.98 Aligned_cols=57 Identities=9% Similarity=0.004 Sum_probs=39.4
Q ss_pred CcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 202 GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 202 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
|.+.-+|+.+++.+-+.+.+. ++.+-..+-.+.++++++ +.++.+|.++++.+=+.+
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~ 524 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence 568888999998888775332 222222344566777776 899999999999874443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.97 E-value=0.49 Score=35.57 Aligned_cols=148 Identities=9% Similarity=0.159 Sum_probs=83.4
Q ss_pred ceEEEcC---CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEc------CCCcEEEEEec-C---CeE
Q 024185 94 PTVAFDQ---QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS------NDGKSMLLTTT-N---NNI 160 (271)
Q Consensus 94 ~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s------~~~~~l~~~~~-d---~~i 160 (271)
+++-++| +..+++....++-|++||++..+ ...+. .+.+..+..- ....-+++++. + .+|
T Consensus 29 PAIW~n~~~p~~SlI~gTdK~~Gl~vYdL~G~~-----l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l 101 (353)
T d1h6la_ 29 PAIWLDPKNPQNSKLITTNKKSGLAVYSLEGKM-----LHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTI 101 (353)
T ss_dssp EEEECCSSCGGGCEEEEEETTSCCEEEETTCCE-----EEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEE
T ss_pred ceEEcCCCCcCccEEEEEcCcCCEEEEcCCCcE-----EEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeE
Confidence 3344454 34566666777779999996433 22222 2455555433 22223555553 2 367
Q ss_pred EEEECC-CCeEEEEeecCCCC-----CceeeEEE--CCC-CC-EEEEecCCCcEEEEEcC---Cc----eeEEEecCCcc
Q 024185 161 YVLDAY-GGEKRCGFSLEPSP-----NTNTEATF--TPD-GQ-YVVSGSGDGTLHAWNIN---TR----NEVACWNGNIG 223 (271)
Q Consensus 161 ~~~d~~-~~~~~~~~~~~~~~-----~~v~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~ 223 (271)
.+|.+. ....+..+.....+ ..+..+|+ +|. |. +++....+|.+..|.+. .+ +.++.+.. ..
T Consensus 102 ~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~ 180 (353)
T d1h6la_ 102 EIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NS 180 (353)
T ss_dssp EEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SS
T ss_pred EEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CC
Confidence 788764 22233333322111 12555666 665 44 45666778998888763 22 33445543 34
Q ss_pred eeEEEEEecCCcEEEEeCCeEEEEcC
Q 024185 224 VVACLKWAPRRAMFVAASSVLSFWIP 249 (271)
Q Consensus 224 ~v~~~~~s~~~~~l~~~~~~v~iw~~ 249 (271)
.+.++.+.++...|..+-..+.+|.+
T Consensus 181 q~EGCVvDde~~~LyisEE~~Giw~~ 206 (353)
T d1h6la_ 181 QTEGMAADDEYGSLYIAEEDEAIWKF 206 (353)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred ccceEEEeCCCCcEEEecCccceEEE
Confidence 68899999988888888744556644
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.65 E-value=0.72 Score=35.96 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=39.3
Q ss_pred CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeec------CCCCCceeeEEECCC
Q 024185 135 DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL------EPSPNTNTEATFTPD 191 (271)
Q Consensus 135 ~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~------~~~~~~v~~~~~~~~ 191 (271)
.-....+|+|.|||+.+++--..|.|++++..+++....... .........++++|+
T Consensus 25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 345678999999998776654579999999877754332221 112245778999996
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.51 E-value=0.52 Score=33.76 Aligned_cols=104 Identities=8% Similarity=0.020 Sum_probs=53.2
Q ss_pred CCcEEEEEec-----CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC-----CcEEEEEcCCceeEE
Q 024185 147 DGKSMLLTTT-----NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-----GTLHAWNINTRNEVA 216 (271)
Q Consensus 147 ~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 216 (271)
++..++.|+. ...+..||..+.+.... ..........+... .+++.++.|+.+ .....+|..+.+...
T Consensus 148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~ 225 (288)
T d1zgka1 148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI-TAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTF 225 (288)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred eecceEecCcccccccceEEEeeccccccccc-cccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeec
Confidence 3455555554 24578888877654322 11111111112222 245566666544 357788877655433
Q ss_pred EecCCccee-EEEEEecCCcEEEEeC-------CeEEEEcCCCCC
Q 024185 217 CWNGNIGVV-ACLKWAPRRAMFVAAS-------SVLSFWIPNPSS 253 (271)
Q Consensus 217 ~~~~~~~~v-~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~ 253 (271)
.-....... .+++ ..++++++.|+ ..+.+||+++.+
T Consensus 226 ~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 226 VAPMKHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp CCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ccCccCcccceEEE-EECCEEEEEecCCCCeecceEEEEECCCCE
Confidence 221111111 1222 33678777775 448899998754
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.47 E-value=1.1 Score=33.91 Aligned_cols=139 Identities=12% Similarity=0.004 Sum_probs=86.0
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCC---------CCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEE
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRS---------YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 162 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 162 (271)
....+++++...++++|+.++ +.+..+.. ..........+ ..|..++|+.| .++.. .++.+..
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d--~l~v~-~~~~l~~ 109 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGD--QVLVS-TRNALYS 109 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETT--EEEEE-ESSEEEE
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCC--EEEEE-eCCCEEE
Confidence 345599999888888888664 66665321 11111112222 35888999865 34444 4567888
Q ss_pred EECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecC-----CcceeEEEEEecCCcEE
Q 024185 163 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG-----NIGVVACLKWAPRRAMF 237 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l 237 (271)
++...-........... .+..+.++|. .++....+|.+.++++..++......+ -.+.+.+++|++.|..+
T Consensus 110 ~~~~~l~~~~~~~~~~~--~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~ 185 (381)
T d1xipa_ 110 LDLEELSEFRTVTSFEK--PVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQS 185 (381)
T ss_dssp EESSSTTCEEEEEECSS--CEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEE
T ss_pred EEeeccccccccccccc--cccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEE
Confidence 88765433333322222 3777777775 466667788999999988765432211 12457889999988888
Q ss_pred EEeCC
Q 024185 238 VAASS 242 (271)
Q Consensus 238 ~~~~~ 242 (271)
+++.|
T Consensus 186 v~~~g 190 (381)
T d1xipa_ 186 FAWRN 190 (381)
T ss_dssp EEEET
T ss_pred EEeCC
Confidence 87763
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.12 E-value=1.6 Score=30.16 Aligned_cols=32 Identities=6% Similarity=-0.056 Sum_probs=20.9
Q ss_pred cceEEEcCC-CCEEEEEecCCeEEEEeCCCCCC
Q 024185 93 RPTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYDK 124 (271)
Q Consensus 93 ~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~ 124 (271)
+..++..-+ .+..++|+......+|-++.++.
T Consensus 104 vRI~S~~yddk~vvF~Gased~~~LYviegGkl 136 (313)
T d2hu7a1 104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGL 136 (313)
T ss_dssp BEEEEEEECSSCEEEEEECSSCEEEEEEETTEE
T ss_pred EEEEEeeecCceEEEecccCCceEEEEEeCCce
Confidence 344444334 45667777777888888887774
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.97 E-value=2.7 Score=29.67 Aligned_cols=175 Identities=9% Similarity=0.027 Sum_probs=77.1
Q ss_pred ceEEEEEecCcceeEE--EecCCcceEEEcCCCCEEEEEec---------CCeEEEEeCCCCCCCcceEEEecCCccceE
Q 024185 72 LEYGIFVLMLASFQGI--LRLRGRPTVAFDQQGLVFAVAME---------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 140 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 140 (271)
..+.+||+++++-... ++.......+..-+++.++.|+. -..+.+||..+.+.... -.+......-.
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~--~~~p~~r~~~~ 96 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPC--APMSVPRNRIG 96 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEEC--CCCSSCCBTCE
T ss_pred ceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhccccccccccc--ccccceeccee
Confidence 3577899988764332 22211111222225566666542 13677888876553111 01111111111
Q ss_pred EEEEcCCCcEEEEEecCC-----eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC-----CcEEEEEcC
Q 024185 141 DIKFSNDGKSMLLTTTNN-----NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-----GTLHAWNIN 210 (271)
Q Consensus 141 ~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~ 210 (271)
+.. .+++.++.++.++ ....+|..+......-. ......-...... +++.++.|+.+ ..+..||..
T Consensus 97 ~~~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~ 172 (288)
T d1zgka1 97 VGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP-MLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPE 172 (288)
T ss_dssp EEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCC-CSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred ccc--cceeeEEecceecccccceeeeeccccCccccccc-cccccccceeeee-eecceEecCcccccccceEEEeecc
Confidence 222 2566666554432 35556766654322211 1111111112222 34555566543 357888887
Q ss_pred CceeEEEecCC-cceeEEEEEecCCcEEEEeC-------CeEEEEcCCCCC
Q 024185 211 TRNEVACWNGN-IGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS 253 (271)
Q Consensus 211 ~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~ 253 (271)
+.+....-... ...-.+... .++++++.++ .....+|..+.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~ 222 (288)
T d1zgka1 173 RNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETET 222 (288)
T ss_dssp TTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeeccee
Confidence 65543321111 111112222 2455555553 346777766544
|